Citrus Sinensis ID: 018283

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MLSILIENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHccccccEEEEEEcccccccccccEEEEEEEcccccccccEEcccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHEEEEcccccEEEEEcccccccccccEEEEEEEcccccccHHHHHHHHccccEEEEEEEHHHHHcEcccccccEHHHHHHHHHHHHHccHHHcccEEEEEEEcHHHHHHHHHHccHHHcHccccccccccccccHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MLSILIENMgllcsknrrynaadseenAQTAEIERRIEQETKAEKHIQKLLLlgagesgksTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSeiggrldyprLTKELAEDIEtlwadpaiqddvLYARVRTTGVVeiqfspvgehkksgevYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVlkqpcfektsfMLFLNKFDIFEKKVlkvplnvcewfkdyqpvstgkQEIENAYEFVKKKFEELYFqstapdrvDRVFKIYRttaldpklvKKTFKLVDETLRRRHLFEAGLL
Flexible Loop (DISEMBL)
MLSILIENMGLLCSKNRrynaadseenaqTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEigeklseiggrldypRLTKELAEDIEtlwadpaiqdDVLYARVRTTGVVeiqfspvgehkksgevyRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYfqstapdrvdrVFKIyrttaldpklvkktfklvdetlrrrhlfeagll
Low Complexity Region (SEG)
MLSILIENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL
Disordered region (IsUnstruct)
****LIENMGLLC*********************************IQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGS***************************EIGGRLDYPRLTKELAEDIETLWADPAIQDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLF*****
Disordered Region (DISOPRED)
****LIENMGLL**************************************LLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYF******RVD*VFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL
Disordered Region (DISEMBL)
MLSILIENMGLLCSKNRRYN***********EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL
Disordered Region (DISPRO)
MLS*LI*NMGLLC*****************AEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSILIENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
P49082	384	Guanine nucleotide-bindin	N/A	no	0.977	0.911	0.828	0.0
Q40224	384	Guanine nucleotide-bindin	N/A	no	0.977	0.911	0.807	1e-180
P93163	385	Guanine nucleotide-bindin	yes	no	0.977	0.909	0.807	1e-179
P93564	384	Guanine nucleotide-bindin	N/A	no	0.977	0.911	0.802	1e-178
P18064	383	Guanine nucleotide-bindin	yes	no	0.974	0.911	0.799	1e-177
O04278	384	Guanine nucleotide-bindin	N/A	no	0.977	0.911	0.802	1e-177
O04279	384	Guanine nucleotide-bindin	N/A	no	0.977	0.911	0.791	1e-176
P26981	384	Guanine nucleotide-bindin	N/A	no	0.977	0.911	0.794	1e-176
P49084	385	Guanine nucleotide-bindin	no	no	0.977	0.909	0.771	1e-168
Q0DJ33	380	Guanine nucleotide-bindin	yes	no	0.952	0.897	0.722	1e-155

>sp|P49082|GPA1_LOTJA Guanine nucleotide-binding protein alpha-1 subunit OS=Lotus japonicus GN=GPA1 PE=2 SV=1

 Score =  635 bits (1638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/384 (82%), Positives = 333/384 (86%), Gaps = 34/384 (8%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGLLCSKNRRYN AD+EEN QTAEIERRIE ETKAEKHIQKLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGLLCSKNRRYNDADTEENTQTAEIERRIELETKAEKHIQKLLLLGAGESGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAELKSY  VIHANVYQTIK+L+DG+KELAQN+ D  K+V+S ENKEIGEKL
Sbjct: 61  LLFQTGFDEAELKSYQPVIHANVYQTIKLLHDGAKELAQNDVDFSKYVISDENKEIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQ------------------------------ 158
           SEIGGRLDYP LTKELA +IE LW D AIQ                              
Sbjct: 121 SEIGGRLDYPCLTKELALEIENLWKDAAIQETYARGNELQVPDCTHYFMENLHRLSDANY 180

Query: 159 ----DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 214
               DDVLYARVRTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV
Sbjct: 181 VPTKDDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 240

Query: 215 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKV 274
           IFCAAISEYDQTLFEDE KNRMMETKELF+WVLKQPCFEKTSFMLFLNKFDIFEKK+LKV
Sbjct: 241 IFCAAISEYDQTLFEDENKNRMMETKELFEWVLKQPCFEKTSFMLFLNKFDIFEKKILKV 300

Query: 275 PLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334
           PLNVCEWFKDYQPVSTGKQEIE+AYEFVKKKFEE YFQ+TAPDRVDRVFKIYRTTALD K
Sbjct: 301 PLNVCEWFKDYQPVSTGKQEIEHAYEFVKKKFEESYFQNTAPDRVDRVFKIYRTTALDQK 360

Query: 335 LVKKTFKLVDETLRRRHLFEAGLL 358
           +VKKTFKLVDETLRRR+LFEAGLL
Sbjct: 361 VVKKTFKLVDETLRRRNLFEAGLL 384

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.
Lotus japonicus (taxid: 34305)

>sp|Q40224|GPA1_LUPLU Guanine nucleotide-binding protein alpha-1 subunit OS=Lupinus luteus GN=GPA1 PE=2 SV=1

 Score =  630 bits (1624), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 310/384 (80%), Positives = 335/384 (87%), Gaps = 34/384 (8%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGLLCS+NRRYN AD+EENAQ AEIERRIE ETKAEKHIQKLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGLLCSRNRRYNDADAEENAQAAEIERRIELETKAEKHIQKLLLLGAGESGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAELKSY+ VIHANV+QTIK+L+DGSKELAQN+ DS K+V+S ENK+IGEKL
Sbjct: 61  LLFQTGFDEAELKSYLPVIHANVFQTIKLLHDGSKELAQNDVDSSKYVISDENKDIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQD----------------------------- 159
           SEIG +LDYP LT ELA++IETLW D AIQ+                             
Sbjct: 121 SEIGSKLDYPYLTTELAKEIETLWEDAAIQETYARGNELQVPGCAHYFMENLQRLSDANY 180

Query: 160 -----DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 214
                DVLYARVRTTGVVEIQFSPVGE+K+SGEVYRLFDVGGQRNERRKWIHLFEGVSAV
Sbjct: 181 VPTKEDVLYARVRTTGVVEIQFSPVGENKRSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 240

Query: 215 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKV 274
           IFCAAISEYDQTLFEDE KNRM ETKELF+W+LKQPCFEKTSFMLFLNKFDIFEKK+LKV
Sbjct: 241 IFCAAISEYDQTLFEDENKNRMTETKELFEWILKQPCFEKTSFMLFLNKFDIFEKKILKV 300

Query: 275 PLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334
           PLNVCEWFKDYQPVSTGKQEIE+AYEFVKKKFEELYFQSTAP+RVDRVFK+YRTTALD K
Sbjct: 301 PLNVCEWFKDYQPVSTGKQEIEHAYEFVKKKFEELYFQSTAPERVDRVFKVYRTTALDQK 360

Query: 335 LVKKTFKLVDETLRRRHLFEAGLL 358
           L+KKTFKLVDE+LRRR+LFEAGLL
Sbjct: 361 LIKKTFKLVDESLRRRNLFEAGLL 384

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Lupinus luteus (taxid: 3873)

>sp|P93163|GPA2_SOYBN Guanine nucleotide-binding protein alpha-2 subunit OS=Glycine max GN=GPA2 PE=2 SV=1

 Score =  627 bits (1616), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 311/385 (80%), Positives = 334/385 (86%), Gaps = 35/385 (9%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIE-QETKAEKHIQKLLLLGAGESGKSTIFKQI 67
           MGLLCS+NRRYN AD+EENAQTAEIERRIE +  +AEKHIQKLLLLGAGESGKSTIFKQI
Sbjct: 1   MGLLCSRNRRYNDADAEENAQTAEIERRIEVRNERAEKHIQKLLLLGAGESGKSTIFKQI 60

Query: 68  KLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEK 127
           KLLFQTGFDEAELKSY+ VIHANVYQTIK+L+DGSKE AQN+ DS K+V+S+ENKEIGEK
Sbjct: 61  KLLFQTGFDEAELKSYLPVIHANVYQTIKLLHDGSKEFAQNDVDSSKYVISNENKEIGEK 120

Query: 128 LSEIGGRLDYPRLTKELAEDIETLWADPAIQD---------------------------- 159
           L EIGGRLDYP L+KELA++IE LW DPAIQ+                            
Sbjct: 121 LLEIGGRLDYPYLSKELAQEIENLWKDPAIQETYARGSELQIPDCTDYFMENLQRLSDAN 180

Query: 160 ------DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSA 213
                 DVLYARVRTTGVVEIQFSPVGE+KKS EVYRLFDVGGQRNERRKWIHLFEGVSA
Sbjct: 181 YVPTKEDVLYARVRTTGVVEIQFSPVGENKKSDEVYRLFDVGGQRNERRKWIHLFEGVSA 240

Query: 214 VIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLK 273
           VIFCAAISEYDQTLFEDE +NRMMETKELF+W+LKQPCFEKTSFMLFLNKFDIFEKK+LK
Sbjct: 241 VIFCAAISEYDQTLFEDENRNRMMETKELFEWILKQPCFEKTSFMLFLNKFDIFEKKILK 300

Query: 274 VPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 333
           VPLNVCEWFKDYQPVSTGKQEIE+AYEFVKKKFEE YFQSTAPDRVDRVFKIYRTTALD 
Sbjct: 301 VPLNVCEWFKDYQPVSTGKQEIEHAYEFVKKKFEESYFQSTAPDRVDRVFKIYRTTALDQ 360

Query: 334 KLVKKTFKLVDETLRRRHLFEAGLL 358
           K+VKKTFKLVDETLRRR+L EAGLL
Sbjct: 361 KVVKKTFKLVDETLRRRNLLEAGLL 385

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Glycine max (taxid: 3847)

>sp|P93564|GPA1_SOLTU Guanine nucleotide-binding protein alpha-1 subunit OS=Solanum tuberosum GN=GPA1 PE=2 SV=1

 Score =  625 bits (1613), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 308/384 (80%), Positives = 334/384 (86%), Gaps = 34/384 (8%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MG LCS+N+ Y+ AD EEN QTAEIERRIEQETKA+KHIQKLLLLGAG+SGKSTIFKQIK
Sbjct: 1   MGSLCSRNKHYSQADDEENTQTAEIERRIEQETKADKHIQKLLLLGAGDSGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAELK+YI VIHANVYQTIK+L+DGSKELAQNE ++ K+++S+ENKEIGEKL
Sbjct: 61  LLFQTGFDEAELKNYIPVIHANVYQTIKILHDGSKELAQNELEASKYLLSAENKEIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQ------------------------------ 158
           SEIGGRLDYPRLTK+L +DIE LW DPAIQ                              
Sbjct: 121 SEIGGRLDYPRLTKDLVQDIEALWKDPAIQETLLRGNELQVPDCAHYFMENLERFSDIHY 180

Query: 159 ----DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 214
               +DVL+AR+RTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGV+AV
Sbjct: 181 IPTKEDVLFARIRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAV 240

Query: 215 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKV 274
           IFCAAISEYDQTLFEDE+KNRMMETKELF+WVLKQPCFEKTSFMLFLNKFDIFE+KVLKV
Sbjct: 241 IFCAAISEYDQTLFEDERKNRMMETKELFEWVLKQPCFEKTSFMLFLNKFDIFEQKVLKV 300

Query: 275 PLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334
           PLN CEWFKDYQ VSTGKQEIE+AYEFVKKKFEE YFQ TAPDRVDRVFKIYRTTALD K
Sbjct: 301 PLNTCEWFKDYQSVSTGKQEIEHAYEFVKKKFEESYFQCTAPDRVDRVFKIYRTTALDQK 360

Query: 335 LVKKTFKLVDETLRRRHLFEAGLL 358
           LVKKTFKLVDETLRRR+LFEAGLL
Sbjct: 361 LVKKTFKLVDETLRRRNLFEAGLL 384

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Solanum tuberosum (taxid: 4113)

>sp|P18064|GPA1_ARATH Guanine nucleotide-binding protein alpha-1 subunit OS=Arabidopsis thaliana GN=GPA1 PE=1 SV=1

 Score =  621 bits (1601), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 307/384 (79%), Positives = 333/384 (86%), Gaps = 35/384 (9%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGLLCS++R ++  D++EN Q AEIERRIEQE KAEKHI+KLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGLLCSRSR-HHTEDTDENTQAAEIERRIEQEAKAEKHIRKLLLLGAGESGKSTIFKQIK 59

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDE ELKSY+ VIHANVYQTIK+L+DG+KE AQNETDS K+++SSE+  IGEKL
Sbjct: 60  LLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETDSAKYMLSSESIAIGEKL 119

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQD----------------------------- 159
           SEIGGRLDYPRLTK++AE IETLW DPAIQ+                             
Sbjct: 120 SEIGGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINY 179

Query: 160 -----DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 214
                DVLYARVRTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGV+AV
Sbjct: 180 IPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAV 239

Query: 215 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKV 274
           IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVL V
Sbjct: 240 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDV 299

Query: 275 PLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334
           PLNVCEWF+DYQPVS+GKQEIE+AYEFVKKKFEELY+Q+TAPDRVDRVFKIYRTTALD K
Sbjct: 300 PLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQK 359

Query: 335 LVKKTFKLVDETLRRRHLFEAGLL 358
           LVKKTFKLVDETLRRR+L EAGLL
Sbjct: 360 LVKKTFKLVDETLRRRNLLEAGLL 383

Exhibits a fast rate of basal nucleotide exchange. Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. Together with GCR1, may regulate the cell cycle via a signaling cascade that uses phosphatidylinositol-specific phospholipase C (PI-PLC) as an effector and inositol 1,4,5-trisphosphate(IP(3)) as a second messenger. Promotes abscisic acid (ABA) responses in guard cells. But, together with GCR1 and GB1, acts as a negative regulator of ABA during seed germination and early seedling development. Involved in the blue light (BL) signaling. Together with GCR1 and ADT3, required for BL-mediated synthesis of phenylpyruvate and subsequently of phenylalanine (Phe), in etiolated seedlings.

Arabidopsis thaliana (taxid: 3702)

>sp|O04278|GPA1_PEA Guanine nucleotide-binding protein alpha-1 subunit OS=Pisum sativum GN=GPA1 PE=2 SV=1

 Score =  620 bits (1598), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 308/384 (80%), Positives = 331/384 (86%), Gaps = 34/384 (8%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGLLCSK+ RYN A +EENAQTAEIERRIE ETKAEKHI+KLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGLLCSKSNRYNDAKAEENAQTAEIERRIELETKAEKHIRKLLLLGAGESGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAELKSY+ V+HANVYQTIK+L+DGSKE AQN+ D  K+V+S+ENK+IGEKL
Sbjct: 61  LLFQTGFDEAELKSYLPVVHANVYQTIKLLHDGSKEFAQNDVDFSKYVISTENKDIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQD----------------------------- 159
           SEIGGRLDYPRLTKELA++IE++W D AIQ+                             
Sbjct: 121 SEIGGRLDYPRLTKELAQEIESIWKDAAIQETYARGNELQVPDCTHYFMENLQRLSDANY 180

Query: 160 -----DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 214
                DVL ARVRTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV
Sbjct: 181 VPTKEDVLLARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 240

Query: 215 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKV 274
           IFC AISEYDQTLFEDE KNRMMETKELF+WVLKQ CFEKTSFMLFLNKFDIFEKK+L V
Sbjct: 241 IFCVAISEYDQTLFEDENKNRMMETKELFEWVLKQQCFEKTSFMLFLNKFDIFEKKILDV 300

Query: 275 PLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334
           PLNVCEWFKDYQPVSTGKQEIE+AYEFVKKKFEE YFQSTAPD VDRVFKIYRTTALD K
Sbjct: 301 PLNVCEWFKDYQPVSTGKQEIEHAYEFVKKKFEESYFQSTAPDSVDRVFKIYRTTALDQK 360

Query: 335 LVKKTFKLVDETLRRRHLFEAGLL 358
           +VKKTFKLVDETLRRR+LFEAGLL
Sbjct: 361 VVKKTFKLVDETLRRRNLFEAGLL 384

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Pisum sativum (taxid: 3888)

>sp|O04279|GPA2_PEA Guanine nucleotide-binding protein alpha-2 subunit OS=Pisum sativum GN=GPA2 PE=2 SV=1

 Score =  619 bits (1595), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 304/384 (79%), Positives = 332/384 (86%), Gaps = 34/384 (8%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGL+CS+NRRY  +D EENAQ AEIERRIE ETKAEKHIQKLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGLVCSRNRRYRDSDPEENAQAAEIERRIESETKAEKHIQKLLLLGAGESGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAEL+SY  VI ANVYQTIKVL+DG+KELAQN+ +S K+V+S E+K+IGEKL
Sbjct: 61  LLFQTGFDEAELRSYTPVIFANVYQTIKVLHDGAKELAQNDLNSAKYVISDESKDIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQD----------------------------- 159
           SEIG RLDYP LTK+LA++IETLW D AIQ+                             
Sbjct: 121 SEIGSRLDYPHLTKDLAKEIETLWEDAAIQETYARGNELQVPDCTKYFMENLQRLSDANY 180

Query: 160 -----DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 214
                DVLYARVRTTGVVEIQFSPVGE+K+SGEVYRLFDVGGQRNERRKWIHLFEGV+AV
Sbjct: 181 VPTKGDVLYARVRTTGVVEIQFSPVGENKRSGEVYRLFDVGGQRNERRKWIHLFEGVTAV 240

Query: 215 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKV 274
           IFCAAISEYDQTLFEDE KNR+METKELF+W+LKQPCFEKTSFMLFLNKFDIFEKK+L V
Sbjct: 241 IFCAAISEYDQTLFEDESKNRLMETKELFEWILKQPCFEKTSFMLFLNKFDIFEKKILNV 300

Query: 275 PLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334
           PLNVCEWFKDYQPVS+GKQEIE+AYEFVKKKFEELYFQS+APDRVDRVFKIYRTTALD K
Sbjct: 301 PLNVCEWFKDYQPVSSGKQEIEHAYEFVKKKFEELYFQSSAPDRVDRVFKIYRTTALDQK 360

Query: 335 LVKKTFKLVDETLRRRHLFEAGLL 358
           +VKKTFKLVDETLRRR+LFEAGLL
Sbjct: 361 VVKKTFKLVDETLRRRNLFEAGLL 384

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Pisum sativum (taxid: 3888)

>sp|P26981|GPA1_SOLLC Guanine nucleotide-binding protein alpha-1 subunit OS=Solanum lycopersicum GN=GPA1 PE=2 SV=1

 Score =  618 bits (1593), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 305/384 (79%), Positives = 330/384 (85%), Gaps = 34/384 (8%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MG LCS+N+ Y+ AD EEN QTAEIERRIEQETKAEKHIQKLLLLGAG+SGKSTIFKQIK
Sbjct: 1   MGSLCSRNKHYSQADDEENTQTAEIERRIEQETKAEKHIQKLLLLGAGDSGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDE ELK+YI VIHANVYQT K+L+DGSKELAQNE ++ K+++S+ENKEIGEKL
Sbjct: 61  LLFQTGFDEEELKNYIPVIHANVYQTTKILHDGSKELAQNELEASKYLLSAENKEIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQ------------------------------ 158
           SEIGGRLDYP LTK+L +DIE LW DPAIQ                              
Sbjct: 121 SEIGGRLDYPHLTKDLVQDIEALWKDPAIQETLLRGNELQVPDCAHYFMENLERFSDVHY 180

Query: 159 ----DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 214
               +DVL+AR+RTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGV+AV
Sbjct: 181 IPTKEDVLFARIRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAV 240

Query: 215 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKV 274
           IFCAAISEYDQTLFEDE+KNRMMETKELF+WVLKQPCFEKTSFMLFLNKFDIFE+KV KV
Sbjct: 241 IFCAAISEYDQTLFEDERKNRMMETKELFEWVLKQPCFEKTSFMLFLNKFDIFEQKVPKV 300

Query: 275 PLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334
           PLN CEWFKDYQ VSTGKQEIE+AYEFVKKKFEE YFQ TAPDRVDRVFKIYRTTALD K
Sbjct: 301 PLNACEWFKDYQSVSTGKQEIEHAYEFVKKKFEESYFQCTAPDRVDRVFKIYRTTALDQK 360

Query: 335 LVKKTFKLVDETLRRRHLFEAGLL 358
           LVKKTFKLVDETLRRR+LFEAGLL
Sbjct: 361 LVKKTFKLVDETLRRRNLFEAGLL 384

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Solanum lycopersicum (taxid: 4081)

>sp|P49084|GPA1_SOYBN Guanine nucleotide-binding protein alpha-1 subunit OS=Glycine max GN=GPA1 PE=2 SV=1

 Score =  592 bits (1525), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 297/385 (77%), Positives = 326/385 (84%), Gaps = 35/385 (9%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGL+CS++RR+  A +EENAQ AEIERRIE ETKAEKHIQKLLLLGAGESG+STIFKQIK
Sbjct: 1   MGLVCSRSRRFREAHAEENAQDAEIERRIELETKAEKHIQKLLLLGAGESGRSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGF+EAELKSYI V+HANVYQTIKVL DGSKELAQN+ DS K+V+S+EN++IG+KL
Sbjct: 61  LLFQTGFNEAELKSYIPVVHANVYQTIKVLQDGSKELAQNDFDSSKYVISNENQDIGQKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQD----------------------------- 159
           SEIGG L YPRLTKELA++IET+W D AIQ+                             
Sbjct: 121 SEIGGTLVYPRLTKELAQEIETMWEDAAIQETYARGNELQVPDCAHYFMENLERLSDANY 180

Query: 160 -----DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 214
                D LYARVRTTGVVEIQFSPVGE+K+SGEVYRLFDVGGQRNERRKWIHLFEGV+AV
Sbjct: 181 VPTKEDFLYARVRTTGVVEIQFSPVGENKRSGEVYRLFDVGGQRNERRKWIHLFEGVTAV 240

Query: 215 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKV 274
           IFC+AISEYDQTL+EDE KNRMMETKELF+WVL+QPCFEKTSFMLFLNKFDIFEKKVL V
Sbjct: 241 IFCSAISEYDQTLYEDENKNRMMETKELFEWVLRQPCFEKTSFMLFLNKFDIFEKKVLNV 300

Query: 275 PLNVCEWFK-DYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 333
           PLNVCEWFK DYQPVST KQEIE+AYEFVKKKFEELYFQSTAPD VDRVFKIY+ TA D 
Sbjct: 301 PLNVCEWFKHDYQPVSTEKQEIEHAYEFVKKKFEELYFQSTAPDCVDRVFKIYQATAPDQ 360

Query: 334 KLVKKTFKLVDETLRRRHLFEAGLL 358
           KLVKKTFKL DETLRRR+  EAGLL
Sbjct: 361 KLVKKTFKLGDETLRRRNPLEAGLL 385

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Glycine max (taxid: 3847)

>sp|Q0DJ33|GPA1_ORYSJ Guanine nucleotide-binding protein alpha-1 subunit OS=Oryza sativa subsp. japonica GN=GPA1 PE=1 SV=2

 Score =  548 bits (1413), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 271/375 (72%), Positives = 312/375 (83%), Gaps = 34/375 (9%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MG  CS++   + A++ +NA++A+I+RRI QETKAE+HI KLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGSSCSRSHSLSEAETTKNAKSADIDRRILQETKAEQHIHKLLLLGAGESGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAEL+SY SVIHANVYQTIK+LY+G+KEL+Q E+DS K+V+S +N+EIGEKL
Sbjct: 61  LLFQTGFDEAELRSYTSVIHANVYQTIKILYEGAKELSQVESDSSKYVISPDNQEIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQD----------------------------- 159
           S+I GRLDYP L KEL  D++ LW DPAIQ+                             
Sbjct: 121 SDIDGRLDYPLLNKELVLDVKRLWQDPAIQETYLRGSILQLPDCAQYFMENLDRLAEAGY 180

Query: 160 -----DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 214
                DVLYARVRT GVV+IQFSPVGE+K+ GEVYRL+DVGGQRNERRKWIHLFEGV+AV
Sbjct: 181 VPTKEDVLYARVRTNGVVQIQFSPVGENKRGGEVYRLYDVGGQRNERRKWIHLFEGVNAV 240

Query: 215 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKV 274
           IFCAAISEYDQ LFEDE KNRMMETKELFDWVLKQ CFEKTSF+LFLNKFDIFEKK+ KV
Sbjct: 241 IFCAAISEYDQMLFEDETKNRMMETKELFDWVLKQRCFEKTSFILFLNKFDIFEKKIQKV 300

Query: 275 PLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334
           PL+VCEWFKDYQP++ GKQE+E+AYEFVKKKFEELYFQS+ PDRVDRVFKIYRTTALD K
Sbjct: 301 PLSVCEWFKDYQPIAPGKQEVEHAYEFVKKKFEELYFQSSKPDRVDRVFKIYRTTALDQK 360

Query: 335 LVKKTFKLVDETLRR 349
           LVKKTFKL+DE++RR
Sbjct: 361 LVKKTFKLIDESMRR 375

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
255550203	392	GTP-binding protein (p) alpha subunit, g	1.0	0.913	0.821	0.0
359476282	392	PREDICTED: guanine nucleotide-binding pr	1.0	0.913	0.816	0.0
157674593	384	hetrotrimeric G protein alpha subunit [P	0.977	0.911	0.825	0.0
114050525	384	G protein alpha subunit [Phaseolus lunat	0.977	0.911	0.825	0.0
356552380	384	PREDICTED: guanine nucleotide-binding pr	0.977	0.911	0.820	1e-180
449447183	392	PREDICTED: guanine nucleotide-binding pr	1.0	0.913	0.811	1e-180
194321202	392	G protein alpha subunit [Gossypium hirsu	1.0	0.913	0.808	1e-180
224088711	384	predicted protein [Populus trichocarpa]	0.977	0.911	0.817	1e-180
296081727	384	unnamed protein product [Vitis vinifera]	0.977	0.911	0.817	1e-180
18032048	392	G protein alpha subunit 3 [Solanum tuber	1.0	0.913	0.795	1e-180

>gi|255550203|ref|XP_002516152.1| GTP-binding protein (p) alpha subunit, gpa1, putative [Ricinus communis] gi|223544638|gb|EEF46154.1| GTP-binding protein (p) alpha subunit, gpa1, putative [Ricinus communis]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/392 (82%), Positives = 344/392 (87%), Gaps = 34/392 (8%)

Query: 1   MLSILIENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGK 60
           MLS ++ NMG LCSK RRYN AD+EENAQ AEIERRIEQETKAEKHIQKLLLLGAG+SGK
Sbjct: 1   MLSSVVHNMGSLCSKQRRYNEADAEENAQAAEIERRIEQETKAEKHIQKLLLLGAGDSGK 60

Query: 61  STIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSE 120
           STIFKQIKLLFQ+GFDE+ELKSYI VIHAN+YQTIK+L+DGSKELAQNE DS K+V+SSE
Sbjct: 61  STIFKQIKLLFQSGFDESELKSYIPVIHANIYQTIKILHDGSKELAQNEADSSKYVISSE 120

Query: 121 NKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQD--------------------- 159
           NK+IGEKLSEIGGRLDYP LTKELA++IETLW D AIQ+                     
Sbjct: 121 NKDIGEKLSEIGGRLDYPCLTKELAKEIETLWKDDAIQETYGRGNELQVPDCAHYFMENL 180

Query: 160 -------------DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 206
                        DVLYARVRTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIH
Sbjct: 181 QRLSDANYVPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIH 240

Query: 207 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 266
           LFEGV+AVIFCAAISEYDQTLFEDE KNRMMETKELF+WVLKQPCFEKTSFMLFLNKFDI
Sbjct: 241 LFEGVTAVIFCAAISEYDQTLFEDENKNRMMETKELFEWVLKQPCFEKTSFMLFLNKFDI 300

Query: 267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 326
           FEKK+LKVPLNVCEWFKDYQPVSTGKQEIE+AYEFVKKKFEELYFQST+PDRVDRVFKIY
Sbjct: 301 FEKKILKVPLNVCEWFKDYQPVSTGKQEIEHAYEFVKKKFEELYFQSTSPDRVDRVFKIY 360

Query: 327 RTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
           RTTALD KLVKKTFKLVDETLRRR+LFEAGLL
Sbjct: 361 RTTALDQKLVKKTFKLVDETLRRRNLFEAGLL 392

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476282|ref|XP_002281862.2| PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Vitis vinifera]

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/392 (81%), Positives = 343/392 (87%), Gaps = 34/392 (8%)

Query: 1   MLSILIENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGK 60
           MLSI+IE MG +CS+++ Y+ AD+EENAQ AEIERRIEQETKAEKHIQKLLLLGAGESGK
Sbjct: 1   MLSIVIERMGSICSRHKHYHEADAEENAQAAEIERRIEQETKAEKHIQKLLLLGAGESGK 60

Query: 61  STIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSE 120
           STIFKQIKLLFQTGFDEAELKSYISV+HANVYQTIKVLYDGS+ELAQN TDS K+ +S E
Sbjct: 61  STIFKQIKLLFQTGFDEAELKSYISVVHANVYQTIKVLYDGSRELAQNTTDSSKYALSIE 120

Query: 121 NKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQD--------------------- 159
           NK+IGEKLSEIGGRLDYPRLT+ELA +IETLW D AIQ+                     
Sbjct: 121 NKDIGEKLSEIGGRLDYPRLTRELANEIETLWKDAAIQETYSRGNELQVPDCAHYFMDNL 180

Query: 160 -------------DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 206
                        DVLYAR+RTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIH
Sbjct: 181 ERLSDANYVPTKEDVLYARIRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIH 240

Query: 207 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 266
           LFEGV+AVIFCAAISEYDQTLFEDE KNRMMETKELF+WVLKQPCF+KTSFMLFLNKFDI
Sbjct: 241 LFEGVTAVIFCAAISEYDQTLFEDENKNRMMETKELFEWVLKQPCFQKTSFMLFLNKFDI 300

Query: 267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 326
           FEKKV+KVPLNVCEWFKDYQPVSTGKQEIE+AYEFVKKKFEELYFQSTAPD VDRVFKIY
Sbjct: 301 FEKKVIKVPLNVCEWFKDYQPVSTGKQEIEHAYEFVKKKFEELYFQSTAPDCVDRVFKIY 360

Query: 327 RTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
           RTTALD KLVKKTFKLVDETLRRR+LFEAGLL
Sbjct: 361 RTTALDQKLVKKTFKLVDETLRRRNLFEAGLL 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157674593|gb|ABV60388.1| hetrotrimeric G protein alpha subunit [Phaseolus vulgaris]

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/384 (82%), Positives = 336/384 (87%), Gaps = 34/384 (8%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGLLCS+NRRYN AD+EENAQTAEIERRIE ETKAEKHIQKLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGLLCSRNRRYNDADAEENAQTAEIERRIELETKAEKHIQKLLLLGAGESGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAELKSY+ VIHANVYQTIK+L+DGSKE AQN+ D  K+V+S+ NKEIGEKL
Sbjct: 61  LLFQTGFDEAELKSYLPVIHANVYQTIKLLHDGSKEFAQNDADFSKYVISNVNKEIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQD----------------------------- 159
           SEIGGRLDYP LTKELA++IE LW DPAIQ+                             
Sbjct: 121 SEIGGRLDYPHLTKELAQEIENLWKDPAIQETYARGSELQIPDCTDYFMDNLQRLSDANY 180

Query: 160 -----DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 214
                DVLYARVRTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV
Sbjct: 181 VPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 240

Query: 215 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKV 274
           IFCAAISEYDQTLFEDE +NRMMETKELF+WVLKQPCFEKTSFMLFLNKFDIFEKK+LKV
Sbjct: 241 IFCAAISEYDQTLFEDENRNRMMETKELFEWVLKQPCFEKTSFMLFLNKFDIFEKKILKV 300

Query: 275 PLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334
           PLNVCEWFKDYQPVSTGKQEIE+AYEFVKKKFEE YFQSTAPDRVDRVFKIYRTTALD K
Sbjct: 301 PLNVCEWFKDYQPVSTGKQEIEHAYEFVKKKFEESYFQSTAPDRVDRVFKIYRTTALDQK 360

Query: 335 LVKKTFKLVDETLRRRHLFEAGLL 358
           +VKKTFKLVDETLRRR+LFEAGLL
Sbjct: 361 VVKKTFKLVDETLRRRNLFEAGLL 384

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|114050525|dbj|BAF30964.1| G protein alpha subunit [Phaseolus lunatus] gi|114050529|dbj|BAF30966.1| G protein alpha subunit [Phaseolus lunatus]

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/384 (82%), Positives = 335/384 (87%), Gaps = 34/384 (8%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGLLCS+NRRYN AD+EENAQTAEIERRIE ETKAEKHIQKLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGLLCSRNRRYNDADAEENAQTAEIERRIELETKAEKHIQKLLLLGAGESGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAELKSY+ VIHANVYQTIK+L+DGSKE AQN+ D  K+V+S  NKEIGEKL
Sbjct: 61  LLFQTGFDEAELKSYLPVIHANVYQTIKLLHDGSKEFAQNDADFSKYVISDVNKEIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQD----------------------------- 159
           SEIGGRLDYP LTKELA++IE LW DPAIQ+                             
Sbjct: 121 SEIGGRLDYPHLTKELAQEIENLWKDPAIQETYARGSELQIPDCTDYFMENLQRLSDANY 180

Query: 160 -----DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 214
                DVLYARVRTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV
Sbjct: 181 VPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 240

Query: 215 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKV 274
           IFCAAISEYDQTLFEDE +NRMMETKELF+WVLKQPCFEKTSFMLFLNKFDIFEKK+LKV
Sbjct: 241 IFCAAISEYDQTLFEDENRNRMMETKELFEWVLKQPCFEKTSFMLFLNKFDIFEKKILKV 300

Query: 275 PLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334
           PLNVCEWFKDYQPVSTGKQEIE+AYEFVKKKFEE YFQSTAPDRVDRVFKIYRTTALD K
Sbjct: 301 PLNVCEWFKDYQPVSTGKQEIEHAYEFVKKKFEESYFQSTAPDRVDRVFKIYRTTALDQK 360

Query: 335 LVKKTFKLVDETLRRRHLFEAGLL 358
           +VKKTFKLVDETLRRR+LFEAGLL
Sbjct: 361 VVKKTFKLVDETLRRRNLFEAGLL 384

Source: Phaseolus lunatus

Species: Phaseolus lunatus

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552380|ref|XP_003544546.1| PREDICTED: guanine nucleotide-binding protein alpha-2 subunit-like [Glycine max]

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 315/384 (82%), Positives = 336/384 (87%), Gaps = 34/384 (8%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGLLCS+NRRYN AD+EE+AQTAEIERRIE ETKAEKHIQKLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGLLCSRNRRYNDADAEESAQTAEIERRIELETKAEKHIQKLLLLGAGESGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAELKSY+ VIHANVYQTIK+L+DGSKE AQN+ DS K+V+S+ENKEIGEKL
Sbjct: 61  LLFQTGFDEAELKSYLPVIHANVYQTIKLLHDGSKEFAQNDVDSSKYVISNENKEIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQD----------------------------- 159
           SEIGGRLDYP LTKELA++IE LW DPAIQ+                             
Sbjct: 121 SEIGGRLDYPYLTKELAQEIENLWKDPAIQETYARGSELQIPDCTDYFMENLQRLSDTNY 180

Query: 160 -----DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 214
                DVLYARVRT+GVVEIQFSPVGE KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV
Sbjct: 181 VPTKEDVLYARVRTSGVVEIQFSPVGESKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 240

Query: 215 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKV 274
           IFCAAISEYDQTLFEDE +NRM ETKELF+W+LKQPCFEKTSFMLFLNKFDIFEKK+LKV
Sbjct: 241 IFCAAISEYDQTLFEDENRNRMTETKELFEWILKQPCFEKTSFMLFLNKFDIFEKKILKV 300

Query: 275 PLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334
           PLNVCEWFKDYQPVSTGKQEIE+AYEFVKKKFEE YFQSTAPDRVDRVFKIYRTTALD K
Sbjct: 301 PLNVCEWFKDYQPVSTGKQEIEHAYEFVKKKFEESYFQSTAPDRVDRVFKIYRTTALDQK 360

Query: 335 LVKKTFKLVDETLRRRHLFEAGLL 358
           +VKKTFKLVDETLRRR+LFEAGLL
Sbjct: 361 VVKKTFKLVDETLRRRNLFEAGLL 384

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447183|ref|XP_004141348.1| PREDICTED: guanine nucleotide-binding protein alpha-1 subunit-like [Cucumis sativus] gi|449486722|ref|XP_004157381.1| PREDICTED: guanine nucleotide-binding protein alpha-1 subunit-like [Cucumis sativus]

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 318/392 (81%), Positives = 339/392 (86%), Gaps = 34/392 (8%)

Query: 1   MLSILIENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGK 60
           MLS L  NMGLLCS+NR YN  D+EE  Q AEIERRIEQET+AEKHIQKLLLLGAGESGK
Sbjct: 1   MLSHLSRNMGLLCSRNRHYNEQDAEEKTQAAEIERRIEQETEAEKHIQKLLLLGAGESGK 60

Query: 61  STIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSE 120
           STIFKQIKLLFQTGFDEAELKSYI VIHANVYQTIKVL+DGSKELAQN+ +  K+V+SSE
Sbjct: 61  STIFKQIKLLFQTGFDEAELKSYIPVIHANVYQTIKVLHDGSKELAQNDKEFTKYVLSSE 120

Query: 121 NKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQD--------------------- 159
           NK+IGEKLS+IGGRLDYPRLT+E A+DIETLW D AIQ+                     
Sbjct: 121 NKDIGEKLSDIGGRLDYPRLTRERAQDIETLWKDAAIQETYSRGNELQVPDCTQYFMENL 180

Query: 160 -------------DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 206
                        DVLYARVRTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIH
Sbjct: 181 QRLSDANYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIH 240

Query: 207 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 266
           LFEGV+AVIFCAAISEYDQTLFEDEQKNRMMETKELF+WVLKQ CFEKTSFMLFLNKFDI
Sbjct: 241 LFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFEWVLKQECFEKTSFMLFLNKFDI 300

Query: 267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 326
           FEKKVLKVPL+VCEWF DYQPVSTGKQEIE+AYEFVKKKFEELYF+STAPDRVDRVFK+Y
Sbjct: 301 FEKKVLKVPLSVCEWFNDYQPVSTGKQEIEHAYEFVKKKFEELYFKSTAPDRVDRVFKVY 360

Query: 327 RTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
           RTTALD KLVKKTFKLVDETLRRR+LFEAGLL
Sbjct: 361 RTTALDQKLVKKTFKLVDETLRRRNLFEAGLL 392

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194321202|gb|ACF48819.1| G protein alpha subunit [Gossypium hirsutum]

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 317/392 (80%), Positives = 336/392 (85%), Gaps = 34/392 (8%)

Query: 1   MLSILIENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGK 60
           ML  ++ENMGLLCSKN RY  AD+EENAQ AEI+RRIEQE KAEKHIQKLLLLGAGESGK
Sbjct: 1   MLITVLENMGLLCSKNHRYTEADAEENAQAAEIDRRIEQERKAEKHIQKLLLLGAGESGK 60

Query: 61  STIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSE 120
           STIFKQIKLLFQTGFDE ELKSYISVIHAN+YQTIK+LYDGSKE AQN+ DS K+V+SSE
Sbjct: 61  STIFKQIKLLFQTGFDEDELKSYISVIHANIYQTIKILYDGSKEFAQNDADSSKYVLSSE 120

Query: 121 NKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQD--------------------- 159
            K IGEKLSEIG RLDYPRL +ELA++IETLW D AIQ+                     
Sbjct: 121 IKVIGEKLSEIGSRLDYPRLNRELAQEIETLWKDSAIQETYARGNELQVPDCTHYFMENL 180

Query: 160 -------------DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 206
                        DVLYARVRT GVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIH
Sbjct: 181 QRLSDANYIPTKEDVLYARVRTAGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIH 240

Query: 207 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 266
           LFEGV+AVIFCAAISEYDQTLFEDEQKNRM+ETKELFDWVLKQPCFEKTSFMLFLNKFDI
Sbjct: 241 LFEGVTAVIFCAAISEYDQTLFEDEQKNRMVETKELFDWVLKQPCFEKTSFMLFLNKFDI 300

Query: 267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 326
           FE KVLKVPLNVCEWFKDYQPVSTGKQEIE+AYEFVKKKFEELYFQSTAPDRVDR  KIY
Sbjct: 301 FENKVLKVPLNVCEWFKDYQPVSTGKQEIEHAYEFVKKKFEELYFQSTAPDRVDRASKIY 360

Query: 327 RTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
           RTTALD KLVKKTFKLVDE+LRRR+LFEAGLL
Sbjct: 361 RTTALDQKLVKKTFKLVDESLRRRNLFEAGLL 392

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088711|ref|XP_002308517.1| predicted protein [Populus trichocarpa] gi|222854493|gb|EEE92040.1| predicted protein [Populus trichocarpa]

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 314/384 (81%), Positives = 337/384 (87%), Gaps = 34/384 (8%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MG LCSK RR N AD+EENAQ AEIERRIEQETKAEKHIQKLLLLGAG+SGKSTIFKQIK
Sbjct: 1   MGSLCSKQRRCNEADAEENAQAAEIERRIEQETKAEKHIQKLLLLGAGDSGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQ+GFDEAELKSYI VIHANVYQTIK+L+DGSKELAQNETDS+K+V+S+ENK+IG+KL
Sbjct: 61  LLFQSGFDEAELKSYIPVIHANVYQTIKILHDGSKELAQNETDSLKYVISNENKDIGKKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQD----------------------------- 159
           SEIGGRLD+PRLTKELA++IETLW D A+Q+                             
Sbjct: 121 SEIGGRLDHPRLTKELAQEIETLWRDAAVQETYACGHKLQVPDCTPYFMDNLQRLSDSNY 180

Query: 160 -----DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 214
                DVLYARVRTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGV+AV
Sbjct: 181 IPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAV 240

Query: 215 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKV 274
           IFCAAISEYDQTLFEDE KNRM+ETKELF+WVLKQPCFEKTSFMLFLNKFDIFEKKVLK 
Sbjct: 241 IFCAAISEYDQTLFEDENKNRMIETKELFEWVLKQPCFEKTSFMLFLNKFDIFEKKVLKA 300

Query: 275 PLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334
           PLN CEWFKDYQP+STGKQEIE+AYEFVKKKFEELYFQST PDRVDRVFKIYRTTALD K
Sbjct: 301 PLNACEWFKDYQPISTGKQEIEHAYEFVKKKFEELYFQSTTPDRVDRVFKIYRTTALDQK 360

Query: 335 LVKKTFKLVDETLRRRHLFEAGLL 358
           LVKKTFKLVDETLRRR+LFEAGLL
Sbjct: 361 LVKKTFKLVDETLRRRNLFEAGLL 384

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081727|emb|CBI20732.3| unnamed protein product [Vitis vinifera]

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 314/384 (81%), Positives = 336/384 (87%), Gaps = 34/384 (8%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MG +CS+++ Y+ AD+EENAQ AEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGSICSRHKHYHEADAEENAQAAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAELKSYISV+HANVYQTIKVLYDGS+ELAQN TDS K+ +S ENK+IGEKL
Sbjct: 61  LLFQTGFDEAELKSYISVVHANVYQTIKVLYDGSRELAQNTTDSSKYALSIENKDIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQD----------------------------- 159
           SEIGGRLDYPRLT+ELA +IETLW D AIQ+                             
Sbjct: 121 SEIGGRLDYPRLTRELANEIETLWKDAAIQETYSRGNELQVPDCAHYFMDNLERLSDANY 180

Query: 160 -----DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 214
                DVLYAR+RTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGV+AV
Sbjct: 181 VPTKEDVLYARIRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAV 240

Query: 215 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKV 274
           IFCAAISEYDQTLFEDE KNRMMETKELF+WVLKQPCF+KTSFMLFLNKFDIFEKKV+KV
Sbjct: 241 IFCAAISEYDQTLFEDENKNRMMETKELFEWVLKQPCFQKTSFMLFLNKFDIFEKKVIKV 300

Query: 275 PLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334
           PLNVCEWFKDYQPVSTGKQEIE+AYEFVKKKFEELYFQSTAPD VDRVFKIYRTTALD K
Sbjct: 301 PLNVCEWFKDYQPVSTGKQEIEHAYEFVKKKFEELYFQSTAPDCVDRVFKIYRTTALDQK 360

Query: 335 LVKKTFKLVDETLRRRHLFEAGLL 358
           LVKKTFKLVDETLRRR+LFEAGLL
Sbjct: 361 LVKKTFKLVDETLRRRNLFEAGLL 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18032048|gb|AAL51157.1| G protein alpha subunit 3 [Solanum tuberosum]

 Score =  635 bits (1638), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 312/392 (79%), Positives = 341/392 (86%), Gaps = 34/392 (8%)

Query: 1   MLSILIENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGK 60
           MLS+++ENMG LCS+N+ Y+ AD EEN QTAEIERRIEQETKA+KHIQKLLLLGAG+SGK
Sbjct: 1   MLSVVLENMGSLCSRNKHYSQADDEENTQTAEIERRIEQETKADKHIQKLLLLGAGDSGK 60

Query: 61  STIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSE 120
           STIFKQIKLLFQTGFDEAELK+YI VIHANVYQTIK+L+DGSKELAQNE ++ K+++S+E
Sbjct: 61  STIFKQIKLLFQTGFDEAELKNYIPVIHANVYQTIKILHDGSKELAQNELEASKYLLSAE 120

Query: 121 NKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------------------- 158
           NKEIGEKLSEIGGRLDYPRLTK+L +DIE LW DPAIQ                      
Sbjct: 121 NKEIGEKLSEIGGRLDYPRLTKDLVQDIEALWKDPAIQETLLRGNELQVPDCAHYFMENL 180

Query: 159 ------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 206
                       +DVL+AR+RTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIH
Sbjct: 181 ERFSDIHYIPTKEDVLFARIRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIH 240

Query: 207 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 266
           LFEGV+AVIFCAAISEYDQTLFEDE+KNRMMETKELF+WVLKQPCFEKTSFMLFLNKFDI
Sbjct: 241 LFEGVTAVIFCAAISEYDQTLFEDERKNRMMETKELFEWVLKQPCFEKTSFMLFLNKFDI 300

Query: 267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 326
           FE+KVLKVPLN CEWFKDYQ VSTGKQEIE+AYEFVKKKFEE YFQ TAPD VDRVFKIY
Sbjct: 301 FEQKVLKVPLNTCEWFKDYQSVSTGKQEIEHAYEFVKKKFEESYFQCTAPDCVDRVFKIY 360

Query: 327 RTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
           RTTALD KLVKKTFKLVDETLRRR+LFEAGLL
Sbjct: 361 RTTALDQKLVKKTFKLVDETLRRRNLFEAGLL 392

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:2005529	383	GP ALPHA 1 "AT2G26300" [Arabid	0.634	0.592	0.860	4e-164
UNIPROTKB|Q0DJ33	380	GPA1 "Guanine nucleotide-bindi	0.608	0.573	0.772	2.3e-146
UNIPROTKB|P0C7Q4	354	GNAT3 "Guanine nucleotide-bind	0.511	0.516	0.425	3.3e-57
MGI|MGI:3588268	354	Gnat3 "guanine nucleotide bind	0.541	0.548	0.413	2.3e-56
UNIPROTKB|A8MTJ3	354	GNAT3 "Guanine nucleotide-bind	0.541	0.548	0.413	7.8e-56
UNIPROTKB|E2R3I0	355	GNAT3 "Uncharacterized protein	0.544	0.549	0.399	3.3e-55
RGD|727817	354	Gnat3 "guanine nucleotide bind	0.541	0.548	0.413	4.2e-55
DICTYBASE|DDB_G0283349	356	gpaA "G protein alpha subunit	0.511	0.514	0.398	4.8e-54
ZFIN|ZDB-GENE-011128-10	354	gnat2 "guanine nucleotide bind	0.511	0.516	0.405	3.3e-53
UNIPROTKB|A0EJE8	353	A0EJE8 "G(Alpha)i" [Anopheles	0.511	0.518	0.42	1.4e-52

TAIR|locus:2005529 GP ALPHA 1 "AT2G26300" [Arabidopsis thaliana (taxid:3702)]

 Score = 1008 (359.9 bits), Expect = 4.0e-164, Sum P(2) = 4.0e-164
 Identities = 197/229 (86%), Positives = 210/229 (91%)

Query:   132 GGRLDYPRLTKELAEDIETLWADPAI--QDDVLYARVRTTGVVEIQFSPVGEHKKSGEVY 189
             G  L  P  TK L E+++ L     I  ++DVLYARVRTTGVVEIQFSPVGE+KKSGEVY
Sbjct:   155 GNELQVPDCTKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVY 214

Query:   190 RLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ 249
             RLFDVGGQRNERRKWIHLFEGV+AVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ
Sbjct:   215 RLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ 274

Query:   250 PCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEEL 309
             PCFEKTSFMLFLNKFDIFEKKVL VPLNVCEWF+DYQPVS+GKQEIE+AYEFVKKKFEEL
Sbjct:   275 PCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEEL 334

Query:   310 YFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
             Y+Q+TAPDRVDRVFKIYRTTALD KLVKKTFKLVDETLRRR+L EAGLL
Sbjct:   335 YYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLLEAGLL 383

GO:0001664 "G-protein coupled receptor binding" evidence=IBA

GO:0004871 "signal transducer activity" evidence=IEA;ISS;IBA

GO:0005525 "GTP binding" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IBA

GO:0019001 "guanyl nucleotide binding" evidence=IEA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IBA

GO:0005834 "heterotrimeric G-protein complex" evidence=IDA;TAS;IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP;TAS

GO:0016247 "channel regulator activity" evidence=IMP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IMP

GO:0009845 "seed germination" evidence=IEP;IMP

GO:0001789 "G-protein coupled receptor signaling pathway, coupled to S1P second messenger" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0008219 "cell death" evidence=RCA;IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP;TAS

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0006571 "tyrosine biosynthetic process" evidence=IMP

GO:0009094 "L-phenylalanine biosynthetic process" evidence=IMP

GO:0010244 "response to low fluence blue light stimulus by blue low-fluence system" evidence=IMP

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IEP

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0009749 "response to glucose stimulus" evidence=IGI;RCA

GO:0005095 "GTPase inhibitor activity" evidence=IDA

GO:0051020 "GTPase binding" evidence=IPI

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

UNIPROTKB|Q0DJ33 GPA1 "Guanine nucleotide-binding protein alpha-1 subunit" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 898 (321.2 bits), Expect = 2.3e-146, Sum P(2) = 2.3e-146
 Identities = 170/220 (77%), Positives = 193/220 (87%)

Query:   132 GGRLDYPRLTKELAEDIETLWADPAI--QDDVLYARVRTTGVVEIQFSPVGEHKKSGEVY 189
             G  L  P   +   E+++ L     +  ++DVLYARVRT GVV+IQFSPVGE+K+ GEVY
Sbjct:   156 GSILQLPDCAQYFMENLDRLAEAGYVPTKEDVLYARVRTNGVVQIQFSPVGENKRGGEVY 215

Query:   190 RLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ 249
             RL+DVGGQRNERRKWIHLFEGV+AVIFCAAISEYDQ LFEDE KNRMMETKELFDWVLKQ
Sbjct:   216 RLYDVGGQRNERRKWIHLFEGVNAVIFCAAISEYDQMLFEDETKNRMMETKELFDWVLKQ 275

Query:   250 PCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEEL 309
              CFEKTSF+LFLNKFDIFEKK+ KVPL+VCEWFKDYQP++ GKQE+E+AYEFVKKKFEEL
Sbjct:   276 RCFEKTSFILFLNKFDIFEKKIQKVPLSVCEWFKDYQPIAPGKQEVEHAYEFVKKKFEEL 335

Query:   310 YFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRR 349
             YFQS+ PDRVDRVFKIYRTTALD KLVKKTFKL+DE++RR
Sbjct:   336 YFQSSKPDRVDRVFKIYRTTALDQKLVKKTFKLIDESMRR 375

GO:0001664 "G-protein coupled receptor binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005095 "GTPase inhibitor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=ISS

GO:0016247 "channel regulator activity" evidence=ISS

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=ISS

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=ISS

UNIPROTKB|P0C7Q4 GNAT3 "Guanine nucleotide-binding protein G(t) subunit alpha-3" [Bos taurus (taxid:9913)]

 Score = 386 (140.9 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
 Identities = 85/200 (42%), Positives = 124/200 (62%)

Query:   158 QDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFC 217
             + DVL++RV+TTG++E QFS    H      +R+FDVGGQR+ER+KWIH FEGV+ +IFC
Sbjct:   171 EQDVLHSRVKTTGIIETQFSFKDLH------FRMFDVGGQRSERKKWIHCFEGVTCIIFC 224

Query:   218 AAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLN 277
             AA+S YD  L EDE+ NRM E+  LF+ +     F  TS +LFLNK D+F++KV KV L+
Sbjct:   225 AALSAYDMVLVEDEEVNRMHESLHLFNSICNHKYFATTSIVLFLNKKDLFQEKVTKVHLS 284

Query:   278 VCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK 337
             +C  F +Y    TG    E+A  ++K +F +L  +     + D+    + T A D + VK
Sbjct:   285 IC--FPEY----TGPNTFEDAGNYIKNQFLDLNLK-----KEDKEIYSHMTCATDTQNVK 333

Query:   338 KTFKLVDETLRRRHLFEAGL 357
               F  V + + + +L + GL
Sbjct:   334 FVFDAVTDIIIKENLKDCGL 353

GO:0050917 "sensory perception of umami taste" evidence=ISS

GO:0050916 "sensory perception of sweet taste" evidence=ISS

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=ISS

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=ISS

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=ISS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0004871 "signal transducer activity" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0001917 "photoreceptor inner segment" evidence=ISS

GO:0001750 "photoreceptor outer segment" evidence=ISS

GO:0001664 "G-protein coupled receptor binding" evidence=ISS

GO:0001580 "detection of chemical stimulus involved in sensory perception of bitter taste" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

MGI|MGI:3588268 Gnat3 "guanine nucleotide binding protein, alpha transducing 3" [Mus musculus (taxid:10090)]

 Score = 384 (140.2 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
 Identities = 88/213 (41%), Positives = 130/213 (61%)

Query:   147 DIETLWADPAI--QDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKW 204
             D++ L A   +  + DVL++RV+TTG++E QFS     K     +R+FDVGGQR+ER+KW
Sbjct:   158 DLDRLTAPGYVPNEQDVLHSRVKTTGIIETQFS----FKDLN--FRMFDVGGQRSERKKW 211

Query:   205 IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264
             IH FEGV+ +IFCAA+S YD  L EDE+ NRM E+  LF+ +     F  TS +LFLNK 
Sbjct:   212 IHCFEGVTCIIFCAALSAYDMVLVEDEEVNRMHESLHLFNSICNHKYFATTSIVLFLNKK 271

Query:   265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFK 324
             D+F++KV KV L++C  F +Y    TG    E+A  ++K +F +L  +     + D+   
Sbjct:   272 DLFQEKVAKVHLSIC--FPEY----TGPNTFEDAGNYIKNQFLDLNLK-----KEDKEIY 320

Query:   325 IYRTTALDPKLVKKTFKLVDETLRRRHLFEAGL 357
              + T A D + VK  F  V + + + +L + GL
Sbjct:   321 SHMTCATDTQNVKFVFDAVTDIIIKENLKDCGL 353

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001580 "detection of chemical stimulus involved in sensory perception of bitter taste" evidence=IBA

GO:0001664 "G-protein coupled receptor binding" evidence=IBA

GO:0001669 "acrosomal vesicle" evidence=ISO

GO:0001750 "photoreceptor outer segment" evidence=IBA

GO:0001917 "photoreceptor inner segment" evidence=IBA

GO:0003924 "GTPase activity" evidence=ISO;IDA

GO:0004871 "signal transducer activity" evidence=IBA

GO:0005525 "GTP binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005834 "heterotrimeric G-protein complex" evidence=IPI

GO:0005930 "axoneme" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IDA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IBA

GO:0016056 "rhodopsin mediated signaling pathway" evidence=IBA

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0019001 "guanyl nucleotide binding" evidence=IEA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IBA

GO:0043234 "protein complex" evidence=ISO

GO:0044444 "cytoplasmic part" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050909 "sensory perception of taste" evidence=IMP;IDA

GO:0050913 "sensory perception of bitter taste" evidence=IMP

GO:0050916 "sensory perception of sweet taste" evidence=IMP

GO:0050917 "sensory perception of umami taste" evidence=IMP

UNIPROTKB|A8MTJ3 GNAT3 "Guanine nucleotide-binding protein G(t) subunit alpha-3" [Homo sapiens (taxid:9606)]

 Score = 390 (142.3 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
 Identities = 88/213 (41%), Positives = 130/213 (61%)

Query:   147 DIETLWADPAI--QDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKW 204
             D++ + A   +  + DVL++RV+TTG++E QFS    H      +R+FDVGGQR+ER+KW
Sbjct:   158 DLDRITASGYVPNEQDVLHSRVKTTGIIETQFSFKDLH------FRMFDVGGQRSERKKW 211

Query:   205 IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264
             IH FEGV+ +IFCAA+S YD  L EDE+ NRM E+  LF+ +     F  TS +LFLNK 
Sbjct:   212 IHCFEGVTCIIFCAALSAYDMVLVEDEEVNRMHESLHLFNSICNHKYFSTTSIVLFLNKK 271

Query:   265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFK 324
             DIF++KV KV L++C  F +Y    TG    E+A  ++K +F +L  +     + D+   
Sbjct:   272 DIFQEKVTKVHLSIC--FPEY----TGPNTFEDAGNYIKNQFLDLNLK-----KEDKEIY 320

Query:   325 IYRTTALDPKLVKKTFKLVDETLRRRHLFEAGL 357
              + T A D + VK  F  V + + + +L + GL
Sbjct:   321 SHMTCATDTQNVKFVFDAVTDIIIKENLKDCGL 353

GO:0046872 "metal ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0035094 "response to nicotine" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0001580 "detection of chemical stimulus involved in sensory perception of bitter taste" evidence=IBA

GO:0001664 "G-protein coupled receptor binding" evidence=IBA

GO:0001750 "photoreceptor outer segment" evidence=IBA

GO:0001917 "photoreceptor inner segment" evidence=IBA

GO:0003924 "GTPase activity" evidence=IBA

GO:0004871 "signal transducer activity" evidence=IBA

GO:0005834 "heterotrimeric G-protein complex" evidence=IBA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IBA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IBA

GO:0050916 "sensory perception of sweet taste" evidence=IBA

GO:0050917 "sensory perception of umami taste" evidence=IBA

GO:0043234 "protein complex" evidence=IDA

GO:0005886 "plasma membrane" evidence=TAS

UNIPROTKB|E2R3I0 GNAT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 380 (138.8 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
 Identities = 85/213 (39%), Positives = 130/213 (61%)

Query:   147 DIETLWADPAI--QDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKW 204
             D++ + A   +  + DVL++RV+TTG++E QFS    H      +R+FDVGGQR+ER+KW
Sbjct:   158 DVDRITAPGYVPNEQDVLHSRVKTTGIIETQFSFKDLH------FRMFDVGGQRSERKKW 211

Query:   205 IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264
             IH FEGV+ +IFCAA+S YD  L ED++ NRM E+  LF+ +     F  TS +LFLNK 
Sbjct:   212 IHCFEGVTCIIFCAALSAYDMVLVEDKEVNRMHESLHLFNSICNHKYFATTSIVLFLNKK 271

Query:   265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFK 324
             D+F++KV KV L++C  F +Y   + G    E+A  ++K +F +L  +     + D+   
Sbjct:   272 DLFQEKVTKVHLSIC--FPEY---TEGPNTFEDAGNYIKNQFLDLNLK-----KEDKEIY 321

Query:   325 IYRTTALDPKLVKKTFKLVDETLRRRHLFEAGL 357
              + T A D + VK  F  V + + + +L + GL
Sbjct:   322 SHMTCATDTQNVKFVFDAVTDIIIKENLKDCGL 354

GO:0050917 "sensory perception of umami taste" evidence=IEA

GO:0050916 "sensory perception of sweet taste" evidence=IEA

GO:0050913 "sensory perception of bitter taste" evidence=IEA

GO:0005834 "heterotrimeric G-protein complex" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IEA

RGD|727817 Gnat3 "guanine nucleotide binding protein, alpha transducing 3" [Rattus norvegicus (taxid:10116)]

 Score = 384 (140.2 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
 Identities = 88/213 (41%), Positives = 130/213 (61%)

Query:   147 DIETLWADPAI--QDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKW 204
             D++ L A   +  + DVL++RV+TTG++E QFS     K     +R+FDVGGQR+ER+KW
Sbjct:   158 DLDRLTAPGYVPNEQDVLHSRVKTTGIIETQFS----FKDLN--FRMFDVGGQRSERKKW 211

Query:   205 IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 264
             IH FEGV+ +IFCAA+S YD  L EDE+ NRM E+  LF+ +     F  TS +LFLNK 
Sbjct:   212 IHCFEGVTCIIFCAALSAYDMVLVEDEEVNRMHESLHLFNSICNHKYFATTSIVLFLNKK 271

Query:   265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFK 324
             D+F++KV KV L++C  F +Y    TG    E+A  ++K +F +L  +     + D+   
Sbjct:   272 DLFQEKVTKVHLSIC--FPEY----TGPNTFEDAGNYIKNQFLDLNLK-----KEDKEIY 320

Query:   325 IYRTTALDPKLVKKTFKLVDETLRRRHLFEAGL 357
              + T A D + VK  F  V + + + +L + GL
Sbjct:   321 SHMTCATDTQNVKFVFDAVTDIIIKENLKDCGL 353

GO:0001580 "detection of chemical stimulus involved in sensory perception of bitter taste" evidence=IBA

GO:0001664 "G-protein coupled receptor binding" evidence=IBA

GO:0001669 "acrosomal vesicle" evidence=IDA

GO:0001750 "photoreceptor outer segment" evidence=IBA

GO:0001917 "photoreceptor inner segment" evidence=IBA

GO:0003924 "GTPase activity" evidence=IEA;ISO;IDA

GO:0004871 "signal transducer activity" evidence=IEA;IBA

GO:0005525 "GTP binding" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISO;IBA

GO:0005930 "axoneme" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IEA;IBA

GO:0007601 "visual perception" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA;IBA

GO:0035094 "response to nicotine" evidence=IEP

GO:0043234 "protein complex" evidence=ISO

GO:0044444 "cytoplasmic part" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0050909 "sensory perception of taste" evidence=ISO

GO:0050913 "sensory perception of bitter taste" evidence=ISO

GO:0050916 "sensory perception of sweet taste" evidence=ISO;IBA

GO:0050917 "sensory perception of umami taste" evidence=ISO;IBA

DICTYBASE|DDB_G0283349 gpaA "G protein alpha subunit Galpha1" [Dictyostelium discoideum (taxid:44689)]

 Score = 346 (126.9 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
 Identities = 80/201 (39%), Positives = 119/201 (59%)

Query:   158 QDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFC 217
             ++DVL +R +TTG++E  F    E + S   +R+ DVGGQR+ER+KW+H F+ V+AVIFC
Sbjct:   173 ENDVLRSRTKTTGIIETVF----EIQNS--TFRMVDVGGQRSERKKWMHCFQEVTAVIFC 226

Query:   218 AAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLN 277
              A+SEYD  L+ED+  NRM E+ +LF  +     F  T+ +LFLNK DIF +K+ K P+ 
Sbjct:   227 VALSEYDLKLYEDDTTNRMQESLKLFKEICNTKWFANTAMILFLNKRDIFSEKITKTPIT 286

Query:   278 VCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK 337
             VC  FK+Y     G Q  E   EF+K++F     Q+  P +   ++  + T A D   + 
Sbjct:   287 VC--FKEYD----GPQTYEGCSEFIKQQFIN---QNENPKK--SIYP-HLTCATDTNNIL 334

Query:   338 KTFKLVDETLRRRHLFEAGLL 358
               F  V + +    L EAG++
Sbjct:   335 VVFNAVKDIVLNLTLGEAGMI 355

GO:0043327 "chemotaxis to cAMP" evidence=IMP

GO:0030154 "cell differentiation" evidence=IMP

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS;IBA

GO:0006184 "GTP catabolic process" evidence=IEA;IDA

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;IMP

GO:0007165 "signal transduction" evidence=IEA;IMP

GO:0004871 "signal transducer activity" evidence=IEA;IMP

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA;IBA

GO:0019001 "guanyl nucleotide binding" evidence=IEA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IBA

GO:0001664 "G-protein coupled receptor binding" evidence=IBA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-011128-10 gnat2 "guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2" [Danio rerio (taxid:7955)]

 Score = 368 (134.6 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
 Identities = 81/200 (40%), Positives = 121/200 (60%)

Query:   158 QDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFC 217
             + DVL +RV+TTG++E QF     H      +R+FDVGGQR+ER+KWIH FEGV+ +IFC
Sbjct:   171 EQDVLRSRVKTTGIIEEQFGCKELH------FRMFDVGGQRSERKKWIHCFEGVTCIIFC 224

Query:   218 AAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLN 277
              A+S YD  L ED++ NRM E+  LF+ +     F  TS +LFLNK D+F++K+ KV L+
Sbjct:   225 GALSAYDMVLVEDDEVNRMHESLHLFNSICNHRFFATTSIVLFLNKKDLFQEKIKKVHLS 284

Query:   278 VCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK 337
             +C  F DY     G    E+A  ++K +F++L  +      V  ++  + T A D K V+
Sbjct:   285 IC--FPDYD----GPNTYEDASNYIKTQFQDLNMKKG----VKEIYS-HMTCATDTKNVE 333

Query:   338 KTFKLVDETLRRRHLFEAGL 357
               F  V + + + +L + GL
Sbjct:   334 IVFNAVTDIIIKENLKDCGL 353

GO:0019001 "guanyl nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA;IBA

GO:0004871 "signal transducer activity" evidence=IEA;IBA

GO:0006184 "GTP catabolic process" evidence=IEA;IBA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA;IBA

GO:0007165 "signal transduction" evidence=IEA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IEA;IBA

GO:0005525 "GTP binding" evidence=IEA

GO:0005834 "heterotrimeric G-protein complex" evidence=IBA

GO:0001750 "photoreceptor outer segment" evidence=IBA

GO:0001917 "photoreceptor inner segment" evidence=IBA

GO:0001664 "G-protein coupled receptor binding" evidence=IBA

GO:0001580 "detection of chemical stimulus involved in sensory perception of bitter taste" evidence=IBA

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|A0EJE8 A0EJE8 "G(Alpha)i" [Anopheles gambiae (taxid:7165)]

 Score = 385 (140.6 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
 Identities = 84/200 (42%), Positives = 124/200 (62%)

Query:   158 QDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFC 217
             Q DVL  RV+TTG+VE  FS    H      +++FDVGGQR+ER+KWIH FEGV+A+IFC
Sbjct:   170 QQDVLRTRVKTTGIVETHFSFKSIH------FKMFDVGGQRSERKKWIHCFEGVTAIIFC 223

Query:   218 AAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLN 277
              A+S YD  L EDE+ NRM+E+ +LFD +     F +TS +LFLNK D+FE+K+++ PL 
Sbjct:   224 VALSGYDLVLAEDEEMNRMIESMKLFDSICNSKWFVETSIILFLNKKDLFEEKIVRSPLT 283

Query:   278 VCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK 337
             +C  F +Y    TG    E A  +++ KFE L   +   D+ + ++  + T A D   ++
Sbjct:   284 IC--FPEY----TGSNTYEEASSYIRMKFENL---NRRKDQKE-IYT-HLTCATDTSNIQ 332

Query:   338 KTFKLVDETLRRRHLFEAGL 357
               F  V + + + +L + GL
Sbjct:   333 FVFDAVSDVIIKNNLKDCGL 352

GO:0001664 "G-protein coupled receptor binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=ISS

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=ISS

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A8MTJ3	GNAT3_HUMAN	No assigned EC number	0.3565	0.8770	0.8870	yes	no
P20353	GNAI_DROME	No assigned EC number	0.3458	0.8743	0.8816	yes	no
P49082	GPA1_LOTJA	No assigned EC number	0.8281	0.9776	0.9114	N/A	no
P49084	GPA1_SOYBN	No assigned EC number	0.7714	0.9776	0.9090	no	no
Q40224	GPA1_LUPLU	No assigned EC number	0.8072	0.9776	0.9114	N/A	no
Q18434	GPA17_CAEEL	No assigned EC number	0.3624	0.8547	0.8595	yes	no
P26981	GPA1_SOLLC	No assigned EC number	0.7942	0.9776	0.9114	N/A	no
P93564	GPA1_SOLTU	No assigned EC number	0.8020	0.9776	0.9114	N/A	no
O04278	GPA1_PEA	No assigned EC number	0.8020	0.9776	0.9114	N/A	no
O04279	GPA2_PEA	No assigned EC number	0.7916	0.9776	0.9114	N/A	no
P16894	GPA1_DICDI	No assigned EC number	0.3643	0.8882	0.8932	yes	no
P29348	GNAT3_RAT	No assigned EC number	0.3458	0.8770	0.8870	yes	no
Q0DJ33	GPA1_ORYSJ	No assigned EC number	0.7226	0.9525	0.8973	yes	no
P18064	GPA1_ARATH	No assigned EC number	0.7994	0.9748	0.9112	yes	no
P93163	GPA2_SOYBN	No assigned EC number	0.8077	0.9776	0.9090	yes	no
P0C7Q4	GNAT3_BOVIN	No assigned EC number	0.3619	0.8770	0.8870	yes	no
Q3V3I2	GNAT3_MOUSE	No assigned EC number	0.3512	0.8770	0.8870	yes	no
A2Y3B5	GPA1_ORYSI	No assigned EC number	0.7226	0.9525	0.8973	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
cd00066	315	cd00066, G-alpha, Alpha subunit of G proteins (gua	1e-115
smart00275	342	smart00275, G_alpha, G protein alpha subunit	1e-112
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	1e-102
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	3e-07
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	5e-05
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	0.002
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	0.002
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	0.003
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	0.003

>gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding)

 Score =  336 bits (864), Expect = e-115
 Identities = 128/341 (37%), Positives = 181/341 (53%), Gaps = 62/341 (18%)

Query: 48  QKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQ 107
            KLLLLGAGESGKSTI KQ+K+L   GF + E + +  VI++N+ Q++K L    + L  
Sbjct: 1   VKLLLLGAGESGKSTILKQMKILHGNGFSDEERREFRPVIYSNILQSMKALLRAMETLNI 60

Query: 108 NETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ--------- 158
              D        EN++  +K+  +  R +   L  ELAE I+ LW DP IQ         
Sbjct: 61  PYGDP-------ENEKDAKKILSLAPRAEEGPLPPELAEAIKRLWKDPGIQACYDRRNEY 113

Query: 159 -------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFD 193
                                     D+L +RV+TTG++E  FS +   K     +R+FD
Sbjct: 114 QLNDSAKYFLDNLDRISDPDYIPTEQDILRSRVKTTGIIETDFS-IKNLK-----FRMFD 167

Query: 194 VGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 253
           VGGQR+ER+KWIH FE V+A+IF  A+SEYDQ L EDE  NRM E+ +LFD +     F 
Sbjct: 168 VGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLVEDESVNRMQESLKLFDSICNSRWFA 227

Query: 254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQS 313
            TS +LFLNK D+FE+K+ K PL     F DY        + E A +++KKKF +L    
Sbjct: 228 NTSIILFLNKKDLFEEKIKKSPLTDY--FPDYTGPP---NDYEEAAKYIKKKFLDLN--- 279

Query: 314 TAPDRVDRVFKIY--RTTALDPKLVKKTFKLVDETLRRRHL 352
             P++     +IY   T A D + ++  F  V + + + +L
Sbjct: 280 RNPNK-----EIYPHFTCATDTENIRFVFDAVKDIILQNNL 315

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315

>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit

 Score =  329 bits (845), Expect = e-112
 Identities = 129/361 (35%), Positives = 190/361 (52%), Gaps = 60/361 (16%)

Query: 32  EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANV 91
           EIE+++E+E K +K   KLLLLGAGESGKSTI KQ+++L   GF + E + Y  +I++N+
Sbjct: 6   EIEKQLEEERKKKKREVKLLLLGAGESGKSTILKQMRILHGDGFSQEERREYRPLIYSNI 65

Query: 92  YQTIKVLYDGSKELAQN--ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIE 149
            +++K L D  +EL     + +S+  +     +      +E         L KE+A+ I+
Sbjct: 66  LESMKALVDAMEELNIPFEDPESILDIRIITEQFNKTDETENV-------LPKEIAKAIK 118

Query: 150 TLWADPAIQ----------------------------------DDVLYARVRTTGVVEIQ 175
            LW D  IQ                                   D+L +RV TTG+ E  
Sbjct: 119 ALWKDEGIQECYRRRNEFQLNDSASYFLDNIDRIGDPDYVPTEQDILRSRVPTTGIQETA 178

Query: 176 FSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNR 235
           F            +R+FDVGGQR+ER+KWIH F+ V+A+IFC A+SEYDQ L EDE  NR
Sbjct: 179 FI------VKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNR 232

Query: 236 MMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEI 295
           M E+  LF+ +     F  TS +LFLNK D+FE+K+ KVPL     F DY+    G  + 
Sbjct: 233 MQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDY--FPDYK----GPNDY 286

Query: 296 ENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEA 355
           E A +F+K+KF  L       +   +    + T A D + ++  F  V + + +R+L +A
Sbjct: 287 EAAAKFIKQKFLRLN-----RNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNLKDA 341

Query: 356 G 356
           G
Sbjct: 342 G 342

Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score =  304 bits (782), Expect = e-102
 Identities = 131/349 (37%), Positives = 194/349 (55%), Gaps = 58/349 (16%)

Query: 47  IQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELA 106
             KLLLLGAGESGKSTI KQ+K+L   GF + E + Y +VI++N+ +++K L +  + L 
Sbjct: 2   EIKLLLLGAGESGKSTILKQMKILHGGGFSDEEREQYRAVIYSNIIRSLKTLLEALENLE 61

Query: 107 QNETDSMKFVVSSENKEIGEKLSEIGGRLDY---PRLTKELAEDIETLWADPAIQ----- 158
              ++S       EN+EI +KL  I   L      R ++ELAEDI+ LW DP IQ     
Sbjct: 62  IESSNS-----KPENEEIAKKLKSILDSLLDVDETRFSEELAEDIKELWNDPGIQEVYNR 116

Query: 159 -----------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVY 189
                                         D+L ARV+TTG++E +F      K     +
Sbjct: 117 SNEFQLSDSAKYFLDNLDRIASPDYVPTDQDILRARVKTTGIIETKFD-FKGLK-----F 170

Query: 190 RLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ 249
           RLFDVGGQR+ER+KWIH FE V+A+IF  ++SEYDQ L+ED+  NR+ E+  LF+ +   
Sbjct: 171 RLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDDSTNRLEESLNLFEEICNS 230

Query: 250 PCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEEL 309
           P F+ T  +LFLNK D+FE+K+ K PL+    F +Y+       + E+A ++++ KF EL
Sbjct: 231 PWFKNTPIILFLNKKDLFEEKLKKGPLSDY--FPEYEG---DPNDYESASKYIRNKFLEL 285

Query: 310 YFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
                  +  +R    + T A D + V+  F+ V + + + +L E+GLL
Sbjct: 286 N-----KNNSERKIYTHFTNATDTENVRFVFEAVKDIILQNNLKESGLL 329

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 191 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250
           ++DVGGQ   R  W H +E    +IF   +   D        + R+ E K     +L + 
Sbjct: 47  VWDVGGQDKIRPLWKHYYENTDGLIFV--VDSSD--------RERIEEAKNELHKLLNEE 96

Query: 251 CFEKTSFMLFLNKFD 265
             +    ++  NK D
Sbjct: 97  ELKGAPLLILANKQD 111

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 191 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250
           ++DVGGQ + R  W + F    AVIF   +   D        ++R+ E KE    +L + 
Sbjct: 62  VWDVGGQESLRPLWRNYFPNTDAVIFV--VDSAD--------RDRIEEAKEELHALLNEE 111

Query: 251 CFEKTSFMLFLNKFDI 266
                  ++  NK D+
Sbjct: 112 ELADAPLLILANKQDL 127

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 10/78 (12%)

Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
           + ++DVGGQ   R  W H F+    +IF    ++ D+ +   ++ +RM+   EL D VL 
Sbjct: 63  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL- 121

Query: 249 QPCFEKTSFMLFLNKFDI 266
                    ++F NK D+
Sbjct: 122 ---------LVFANKQDL 130

Length = 181

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
           + ++DVGGQ   R  W H F+    +IF    ++ ++     E+  RM+   EL D VL 
Sbjct: 46  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVL- 104

Query: 249 QPCFEKTSFMLFLNKFDI 266
                    ++F NK D+
Sbjct: 105 ---------LVFANKQDL 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 191 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250
           ++DVGGQ   R  W    E    +++    S+            R+ E+++    +LK  
Sbjct: 48  VWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEA----------RLDESQKELKHILKNE 97

Query: 251 CFEKTSFMLFLNKFDI 266
             +    +L  NK D+
Sbjct: 98  HIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKEL 242
           KK    +  FD+ GQ   R  W H ++ +  +IF    S+          + RM+  K+ 
Sbjct: 41  KKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD----------RLRMVVAKDE 90

Query: 243 FDWVLKQP--CFEKTSFMLFLNKFDI 266
            + +L  P     +   + + NK D+
Sbjct: 91  LELLLNHPDIKHRRIPILFYANKMDL 116

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
KOG0082	354	consensus G-protein alpha subunit (small G protein	100.0
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	100.0
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	100.0
KOG0099	379	consensus G protein subunit Galphas, small G prote	100.0
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	100.0
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	100.0
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.96
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.94
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.94
PLN00223	181	ADP-ribosylation factor; Provisional	99.94
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.94
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.93
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.93
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.93
KOG0394	210	consensus Ras-related GTPase [General function pre	99.93
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.93
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.93
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.93
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.93
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.92
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.92
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.92
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.92
PTZ00133	182	ADP-ribosylation factor; Provisional	99.92
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.92
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.91
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.91
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.91
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.91
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.91
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.91
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.9
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.9
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.9
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.9
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.9
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.9
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.9
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.89
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.89
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.89
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.89
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.89
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.89
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.89
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.89
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.89
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.89
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.89
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.88
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.88
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.88
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.88
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.88
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.88
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.88
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.88
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.88
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.88
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.88
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.88
PTZ00369	189	Ras-like protein; Provisional	99.88
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.88
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.88
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.88
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.88
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.88
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.88
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.87
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.87
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.87
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.87
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.87
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.87
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.87
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.87
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.87
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.87
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.86
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.86
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.86
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.86
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.86
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.86
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.86
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.86
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.86
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.86
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.86
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.86
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.85
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.85
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.85
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.85
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.85
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.85
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.85
PLN03108	210	Rab family protein; Provisional	99.85
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.85
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.85
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.85
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.84
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.84
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.84
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.84
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.84
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.84
PLN03110	216	Rab GTPase; Provisional	99.84
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.84
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.84
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.83
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.83
PLN03118	211	Rab family protein; Provisional	99.83
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.83
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.83
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.83
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.83
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.83
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.83
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.83
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.82
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.82
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.82
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.82
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.82
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.81
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.8
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.79
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.79
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.79
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.78
KOG0395	196	consensus Ras-related GTPase [General function pre	99.78
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.78
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.78
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.78
PLN00023	334	GTP-binding protein; Provisional	99.77
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.76
PTZ00099	176	rab6; Provisional	99.75
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.74
COG1100	219	GTPase SAR1 and related small G proteins [General	99.72
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.71
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.69
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.67
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.66
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.65
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.65
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.63
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.63
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.63
PRK04213	201	GTP-binding protein; Provisional	99.62
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.62
cd00881	189	GTP_translation_factor GTP translation factor fami	99.61
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.6
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.59
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.59
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.57
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.57
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.54
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.53
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.52
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.52
PRK03003	472	GTP-binding protein Der; Reviewed	99.5
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.5
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.5
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.5
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.49
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.49
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.49
PRK12299	335	obgE GTPase CgtA; Reviewed	99.49
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.49
PRK15494	339	era GTPase Era; Provisional	99.49
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.48
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.48
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.47
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.46
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.46
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.45
PRK03003	472	GTP-binding protein Der; Reviewed	99.45
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.44
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.44
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.43
PRK12296	500	obgE GTPase CgtA; Reviewed	99.43
KOG0090	238	consensus Signal recognition particle receptor, be	99.43
CHL00189	742	infB translation initiation factor 2; Provisional	99.43
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.43
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.42
PRK05433	600	GTP-binding protein LepA; Provisional	99.42
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.42
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.4
PRK05306	787	infB translation initiation factor IF-2; Validated	99.4
COG2229	187	Predicted GTPase [General function prediction only	99.4
KOG1673	205	consensus Ras GTPases [General function prediction	99.39
PRK10218	607	GTP-binding protein; Provisional	99.37
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.37
PRK00093	435	GTP-binding protein Der; Reviewed	99.36
PRK12297	424	obgE GTPase CgtA; Reviewed	99.36
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.36
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.36
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.35
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.35
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.35
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.34
PRK11058	426	GTPase HflX; Provisional	99.34
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.33
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.33
PRK00093	435	GTP-binding protein Der; Reviewed	99.33
PRK12317	425	elongation factor 1-alpha; Reviewed	99.32
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.31
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.3
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.3
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.3
PRK00089	292	era GTPase Era; Reviewed	99.29
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.29
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.28
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.28
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.26
PRK12298	390	obgE GTPase CgtA; Reviewed	99.26
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.24
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.21
PRK04004	586	translation initiation factor IF-2; Validated	99.21
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.2
PRK13351	687	elongation factor G; Reviewed	99.2
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.18
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.17
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.15
PRK12736	394	elongation factor Tu; Reviewed	99.15
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.14
COG0486	454	ThdF Predicted GTPase [General function prediction	99.12
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.11
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.1
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.08
PRK13768	253	GTPase; Provisional	99.06
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.06
PLN03126	478	Elongation factor Tu; Provisional	99.05
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.05
PRK12735	396	elongation factor Tu; Reviewed	99.03
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.01
PLN00043	447	elongation factor 1-alpha; Provisional	99.01
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.99
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.96
CHL00071	409	tufA elongation factor Tu	98.95
PTZ00141	446	elongation factor 1- alpha; Provisional	98.95
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	98.95
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.93
PRK09866	741	hypothetical protein; Provisional	98.92
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.9
PRK12740	668	elongation factor G; Reviewed	98.9
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.9
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.88
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.88
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.85
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.83
PRK00049	396	elongation factor Tu; Reviewed	98.82
COG1160	444	Predicted GTPases [General function prediction onl	98.82
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.81
COG1160	444	Predicted GTPases [General function prediction onl	98.8
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.8
PLN03127	447	Elongation factor Tu; Provisional	98.78
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	98.77
COG1159	298	Era GTPase [General function prediction only]	98.76
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.72
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.71
PRK12739	691	elongation factor G; Reviewed	98.66
KOG0462	650	consensus Elongation factor-type GTP-binding prote	98.66
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.61
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.61
COG1084	346	Predicted GTPase [General function prediction only	98.58
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.5
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.48
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	98.48
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.47
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.46
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.46
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.45
PTZ00416	836	elongation factor 2; Provisional	98.41
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	98.41
PRK00007	693	elongation factor G; Reviewed	98.41
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.37
COG0536	369	Obg Predicted GTPase [General function prediction	98.36
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.36
COG0218	200	Predicted GTPase [General function prediction only	98.34
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.31
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	98.3
PRK07560	731	elongation factor EF-2; Reviewed	98.25
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.25
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.25
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.23
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.22
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.19
KOG1145	683	consensus Mitochondrial translation initiation fac	98.19
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.17
COG3596	296	Predicted GTPase [General function prediction only	98.16
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.15
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.13
PRK14845	1049	translation initiation factor IF-2; Provisional	98.13
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.13
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	98.09
COG2262	411	HflX GTPases [General function prediction only]	98.07
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.01
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.97
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	97.96
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	97.93
PRK09602	396	translation-associated GTPase; Reviewed	97.85
KOG3887	347	consensus Predicted small GTPase involved in nucle	97.84
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.81
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.74
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.74
KOG0461	522	consensus Selenocysteine-specific elongation facto	97.73
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	97.72
COG1163	365	DRG Predicted GTPase [General function prediction	97.72
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.71
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	97.71
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	97.68
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.55
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.44
PRK12289	352	GTPase RsgA; Reviewed	97.37
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	97.36
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	97.32
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.28
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	97.25
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.21
PRK00098	298	GTPase RsgA; Reviewed	97.21
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.2
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.09
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.09
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.0
PRK13796	365	GTPase YqeH; Provisional	97.0
PRK12288	347	GTPase RsgA; Reviewed	96.97
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	96.97
PTZ00258	390	GTP-binding protein; Provisional	96.97
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	96.87
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	96.82
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	96.82
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.75
PRK09601	364	GTP-binding protein YchF; Reviewed	96.72
COG0050	394	TufB GTPases - translation elongation factors [Tra	96.71
KOG1143	591	consensus Predicted translation elongation factor	96.7
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	96.61
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	96.59
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	96.49
PRK08118	167	topology modulation protein; Reviewed	96.46
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.45
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	96.41
PRK07261	171	topology modulation protein; Provisional	96.39
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.38
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.34
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	96.33
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	96.31
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.21
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.05
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.04
PRK10416	318	signal recognition particle-docking protein FtsY;	96.0
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	95.99
PRK06217	183	hypothetical protein; Validated	95.98
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	95.95
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.95
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	95.92
COG5019	373	CDC3 Septin family protein [Cell division and chro	95.91
PF13555	62	AAA_29: P-loop containing region of AAA domain	95.9
cd03115	173	SRP The signal recognition particle (SRP) mediates	95.75
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	95.73
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	95.61
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	95.61
COG1162	301	Predicted GTPases [General function prediction onl	95.59
KOG0464	753	consensus Elongation factor G [Translation, riboso	95.56
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	95.53
KOG0054	1381	consensus Multidrug resistance-associated protein/	95.52
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.42
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	95.41
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	95.39
COG0012	372	Predicted GTPase, probable translation factor [Tra	95.38
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	95.35
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	95.34
PRK03839	180	putative kinase; Provisional	95.3
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.26
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.22
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	95.21
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	95.21
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.16
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	95.16
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	95.13
PRK01889	356	GTPase RsgA; Reviewed	95.1
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.05
PLN03232	1495	ABC transporter C family member; Provisional	95.05
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	95.04
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	95.04
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	95.03
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	95.01
COG4639	168	Predicted kinase [General function prediction only	94.98
PF00005	137	ABC_tran: ABC transporter This structure is on hol	94.96
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	94.95
PRK14530	215	adenylate kinase; Provisional	94.94
PTZ00088	229	adenylate kinase 1; Provisional	94.94
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	94.94
PRK13949	169	shikimate kinase; Provisional	94.91
PRK14532	188	adenylate kinase; Provisional	94.9
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	94.84
PRK00771	437	signal recognition particle protein Srp54; Provisi	94.82
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	94.82
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	94.81
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	94.77
COG4525	259	TauB ABC-type taurine transport system, ATPase com	94.75
PRK14974	336	cell division protein FtsY; Provisional	94.74
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	94.72
COG3638	258	ABC-type phosphate/phosphonate transport system, A	94.71
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	94.69
PF00004	132	AAA: ATPase family associated with various cellula	94.69
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	94.67
PRK02496	184	adk adenylate kinase; Provisional	94.67
PRK09563	287	rbgA GTPase YlqF; Reviewed	94.67
PLN03130	1622	ABC transporter C family member; Provisional	94.66
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	94.64
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	94.63
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	94.61
TIGR00235	207	udk uridine kinase. Model contains a number of lon	94.61
PRK14531	183	adenylate kinase; Provisional	94.6
COG3523	1188	IcmF Type VI protein secretion system component Va	94.6
PRK00300	205	gmk guanylate kinase; Provisional	94.59
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	94.58
PRK08233	182	hypothetical protein; Provisional	94.56
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	94.55
smart00382	148	AAA ATPases associated with a variety of cellular	94.53
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	94.52
PRK00279	215	adk adenylate kinase; Reviewed	94.43
PRK14738	206	gmk guanylate kinase; Provisional	94.42
PRK05480	209	uridine/cytidine kinase; Provisional	94.42
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	94.41
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	94.33
COG4598	256	HisP ABC-type histidine transport system, ATPase c	94.26
PRK10867	433	signal recognition particle protein; Provisional	94.26
PF13173	128	AAA_14: AAA domain	94.26
PRK13695	174	putative NTPase; Provisional	94.25
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	94.22
KOG0410	410	consensus Predicted GTP binding protein [General f	94.18
PRK14737	186	gmk guanylate kinase; Provisional	94.18
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	94.17
PRK00625	173	shikimate kinase; Provisional	94.16
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	94.14
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	94.14
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	94.14
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	94.12
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	94.11
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	94.1
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	94.1
KOG0460	449	consensus Mitochondrial translation elongation fac	94.09
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	94.05
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	94.04
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	94.02
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	94.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	93.98
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	93.98
PRK06762	166	hypothetical protein; Provisional	93.98
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	93.97
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	93.97
PRK05057	172	aroK shikimate kinase I; Reviewed	93.97
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	93.95
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	93.93
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	93.92
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	93.91
PRK14529	223	adenylate kinase; Provisional	93.91
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	93.9
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	93.89
PRK14528	186	adenylate kinase; Provisional	93.89
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	93.88
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	93.87
PRK00131	175	aroK shikimate kinase; Reviewed	93.86
KOG2486	320	consensus Predicted GTPase [General function predi	93.85
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	93.85
cd03269	210	ABC_putative_ATPase This subfamily is involved in	93.82
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	93.8
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	93.79
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	93.79
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	93.78
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	93.78
TIGR00959	428	ffh signal recognition particle protein. This mode	93.77
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	93.76
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	93.75
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	93.75
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	93.75
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	93.75
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	93.75
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	93.75
PLN02674	244	adenylate kinase	93.74
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	93.74
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	93.74
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	93.72
PRK14526	211	adenylate kinase; Provisional	93.71
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	93.71
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	93.69
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	93.69
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	93.69
PRK13947	171	shikimate kinase; Provisional	93.68
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	93.68
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	93.67
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	93.65
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	93.65
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	93.64
PF05729	166	NACHT: NACHT domain	93.63
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	93.62
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	93.62

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=100.00  E-value=9.5e-73  Score=529.75  Aligned_cols=319  Identities=46%  Similarity=0.744  Sum_probs=292.8

Q ss_pred             hcccccCCCCCChhcHHHHHhcHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018283            9 MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIH   88 (358)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I~   88 (358)
                      |||+||      .+.+++.++|++||++|+.++++.++.+|+||||+|+|||||++|||+++|.+||+.+|+..||+.||
T Consensus         1 MG~~~s------~e~~~~~~~~~~I~~~l~~~~~~~~~~iKlLLLGageSGKSTI~KQmkilh~~gfs~ee~~~~r~~I~   74 (354)
T KOG0082|consen    1 MGCICS------AEEKEQVKRSKEIDKQLKKEKKKEKKIIKLLLLGAGESGKSTIVKQMKILHGDGFSEEELLEYRPVIY   74 (354)
T ss_pred             CCcccC------chhhhcchhhhhhhHHHHHHHHhhhhheeeeeecCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            899887      23566777999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhccccccccccccCcchHHHHHHHhhccCCCC-CccCcHHHHHHHHHhhcCCCCC---------
Q 018283           89 ANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLD-YPRLTKELAEDIETLWADPAIQ---------  158 (358)
Q Consensus        89 ~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~lw~d~~i~---------  158 (358)
                      .|+++++..|++|+..++++..       +|..+..+..+........ .+.++++++++|.+||+||+||         
T Consensus        75 ~N~~~~~~~ll~a~~~~~i~~~-------~~~~~~d~~~~~~~~~~~~~~~~~~~e~~~~i~~lW~d~~Iq~~~~r~~e~  147 (354)
T KOG0082|consen   75 SNIIQSLKALLRAMETLGINLD-------DPERENDAQKLTLLADAAEELGVFSPELAEAIKELWKDPGIQACYERRREF  147 (354)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCC-------ChhhhhHHHHHHHhhhcccccccCCHHHHHHHHHHHcCHHHHHHHHcCCcC
Confidence            9999999999999998888754       5666666666654433333 3789999999999999999999         


Q ss_pred             -------------------------cceeeeeeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcE
Q 018283          159 -------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSA  213 (358)
Q Consensus       159 -------------------------~Dil~~~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~  213 (358)
                                               +|||++|.||+||.++.|      ..++..+.++|+|||+++|++|.|||.++++
T Consensus       148 ~l~Dsa~Yfl~~l~rI~~~~Y~PT~~DIL~~R~~T~GI~e~~F------~~k~~~f~~~DvGGQRseRrKWihcFe~v~a  221 (354)
T KOG0082|consen  148 QLNDSAKYFLENLDRISSPDYVPTEQDILRSRVPTTGIVEVEF------TIKGLKFRMFDVGGQRSERKKWIHCFEDVTA  221 (354)
T ss_pred             CCCccHHHHHHhHHHhcCCCCCCCHHHHHhhccCcCCeeEEEE------EeCCCceEEEeCCCcHHHhhhHHHhhcCCCE
Confidence                                     999999999999999999      8888999999999999999999999999999


Q ss_pred             EEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcc
Q 018283          214 VIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQ  293 (358)
Q Consensus       214 iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~  293 (358)
                      ||||+++|+|||++.|+...|||.+++.+|+++++++|+.+++|+||+||.|||+||+...|+.  .|||+|    .|.+
T Consensus       222 viF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~--~~Fpdy----~G~~  295 (354)
T KOG0082|consen  222 VIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKVPLT--DCFPDY----KGVN  295 (354)
T ss_pred             EEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccCchh--hhCcCC----CCCC
Confidence            9999999999999999999999999999999999999999999999999999999999777765  569999    5667


Q ss_pred             cHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHHhhhhhcCCC
Q 018283          294 EIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL  358 (358)
Q Consensus       294 ~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~~~~~l~  358 (358)
                      +.++|.+||..+|.+++++      ..+.+|+|+|||+|+.||+.||++|.+.|+..|++.+||+
T Consensus       296 ~~~~a~~yI~~kF~~l~~~------~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk~~gl~  354 (354)
T KOG0082|consen  296 TYEEAAKYIRKKFEELNKN------KDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLKDAGLI  354 (354)
T ss_pred             ChHHHHHHHHHHHHHHhcc------cCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8999999999999999753      2378999999999999999999999999999999999985

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-72  Score=489.77  Aligned_cols=321  Identities=36%  Similarity=0.603  Sum_probs=299.1

Q ss_pred             HhhcccccCCCCCChhcHHHHHhcHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018283            7 ENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISV   86 (358)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~   86 (358)
                      +.|+|||-     +.+++++++.+.+|+|+|.++++..++++|+||||+|+|||||++|||+++|+.|||++++..|++.
T Consensus         4 ~~~~~ccl-----see~ke~~ri~~eierql~rdkk~arrelkllllgtgesgkstfikqmriihg~gyseedrkgf~~l   78 (359)
T KOG0085|consen    4 LTWMCCCL-----SEEEKEAARINQEIERQLRRDKKDARRELKLLLLGTGESGKSTFIKQMRIIHGAGYSEEDRKGFTKL   78 (359)
T ss_pred             hhhhHhhC-----cHhHHHHHHHHHHHHHHHHHHhHhhhhhheeeeecCCCcchhhHHHHHHhhhcCCCChhhhccchHH
Confidence            56788784     5678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhccccccccccccCcchHHHHHHHhhccCCCCCccCcHHHHHHHHHhhcCCCCC--------
Q 018283           87 IHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ--------  158 (358)
Q Consensus        87 I~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~i~--------  158 (358)
                      ||.|++.+|++++.||+.|.+++.       .++++..+..+.+.+... ...|...++.+|++||.|||||        
T Consensus        79 vyqnif~amqaMIrAMetL~I~y~-------~e~nk~~A~~vrevd~ek-Vttfe~~yv~aik~LW~D~GIqeCYdRRRE  150 (359)
T KOG0085|consen   79 VYQNIFTAMQAMIRAMETLKIPYK-------REENKAHASLVREVDVEK-VTTFEKRYVSAIKWLWRDPGIQECYDRRRE  150 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccc-------cccchhhhhHhhhcchHH-hhhhhHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            999999999999999999999864       788999998888876654 4678899999999999999999        


Q ss_pred             --------------------------cceeeeeeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCc
Q 018283          159 --------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVS  212 (358)
Q Consensus       159 --------------------------~Dil~~~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~  212 (358)
                                                ||+|++|+||+||.+++|      +..++.|++.|+|||++.|++|.|||+++.
T Consensus       151 yqLsDSakYylsdldria~~~ylPTqQDvLRvRvPTTGi~eypf------dl~~iifrmvDvGGqrserrKWIHCFEnvt  224 (359)
T KOG0085|consen  151 YQLSDSAKYYLSDLDRIATPGYLPTQQDVLRVRVPTTGIIEYPF------DLQKIIFRMVDVGGQRSERRKWIHCFENVT  224 (359)
T ss_pred             hhcchhhhHHhhhhhhhcCcccCcchhhhheeecCcccceecCc------chhhheeeeeecCCchhhhhHHHHHHHHHH
Confidence                                      999999999999999999      999999999999999999999999999999


Q ss_pred             EEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCc
Q 018283          213 AVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGK  292 (358)
Q Consensus       213 ~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~  292 (358)
                      +++|.+++|+|||++.++.+.|+++++..+|..++.-||+.+.++++++||.||+++|+..+++-++  ||.|    .||
T Consensus       225 si~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEekI~ySHl~~Y--FPe~----~GP  298 (359)
T KOG0085|consen  225 SIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILYSHLADY--FPEF----DGP  298 (359)
T ss_pred             HHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhhhhhhHHHHHHh--Cccc----CCC
Confidence            9999999999999999999999999999999999999999999999999999999999987766544  6666    787


Q ss_pred             -ccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHHhhhhhcCCC
Q 018283          293 -QEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL  358 (358)
Q Consensus       293 -~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~~~~~l~  358 (358)
                       .+...|.+||.+.|.+++     |+ .++.++.|+|||+|++||+.||.+|.++|++.+|++++|+
T Consensus       299 ~qDa~AAreFILkm~~d~n-----Pd-~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~LkE~NLv  359 (359)
T KOG0085|consen  299 KQDAQAAREFILKMYVDMN-----PD-SDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV  359 (359)
T ss_pred             cccHHHHHHHHHHHHHhhC-----CC-ccceeeeeeeecccchhHHHHHHHHHHHHHHhhhHhhccC
Confidence             789999999999999984     32 4678999999999999999999999999999999999885

>smart00275 G_alpha G protein alpha subunit

Probab=100.00  E-value=3.3e-62  Score=467.74  Aligned_cols=305  Identities=42%  Similarity=0.650  Sum_probs=276.3

Q ss_pred             HhcHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 018283           28 AQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQ  107 (358)
Q Consensus        28 ~~s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I~~n~~~~~~~l~~~~~~l~~  107 (358)
                      ++|++||++|++++++.++.+|+||||+|+||||||+|||+++|.+||+++|+..|++.|+.|++++|+.|+++++.+++
T Consensus         2 ~~~~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmril~~~gfs~~E~~~~~~~I~~Nii~~~~~ll~a~~~~~i   81 (342)
T smart00275        2 RRNKEIEKQLEEERKKKKREVKLLLLGAGESGKSTILKQMRILHGDGFSQEERREYRPLIYSNILESMKALVDAMEELNI   81 (342)
T ss_pred             cchHHHHHHHHHhHHHhhcchheeeeecCCCcchhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             ccccccccccCcchHHHHHHHhhccC--CCCCccCcHHHHHHHHHhhcCCCCC---------------------------
Q 018283          108 NETDSMKFVVSSENKEIGEKLSEIGG--RLDYPRLTKELAEDIETLWADPAIQ---------------------------  158 (358)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~lw~d~~i~---------------------------  158 (358)
                      +..       ++++...+..+.+...  ......+++++++.|..||+||+||                           
T Consensus        82 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~~~~~~~~l~ds~~yf~~~~~ri~~  154 (342)
T smart00275       82 PFE-------DPESILDIRIITEQFNKTDETENVLPKEIAKAIKALWKDEGIQECYRRRNEFQLNDSASYFLDNIDRIGD  154 (342)
T ss_pred             CCC-------ChhhHHHHHHHhccccccccccccCCHHHHHHHHHHHCCHHHHHHHHhccccccccchhHHHHHHHHHhC
Confidence            643       3444455555655431  1112458999999999999999999                           


Q ss_pred             -------cceeeeeeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEcccccccccccc
Q 018283          159 -------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDE  231 (358)
Q Consensus       159 -------~Dil~~~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~  231 (358)
                             +|++++|.||+|+.+..|      ..+++.+.+||+|||+.+|++|.+||.++++||||+|+|+||++++|+.
T Consensus       155 ~~y~Pt~~Dil~~r~~T~Gi~~~~f------~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~  228 (342)
T smart00275      155 PDYVPTEQDILRSRVPTTGIQETAF------IVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDE  228 (342)
T ss_pred             CCCCCCHHHhhheeCCccceEEEEE------EECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccC
Confidence                   999999999999999999      8888999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhh
Q 018283          232 QKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYF  311 (358)
Q Consensus       232 ~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~  311 (358)
                      ..+++.+++.+|+.+++++++.++|++|++||.|++.+|+...|++.+  ||+|    +|+.+++++.+||.++|.++.+
T Consensus       229 ~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~--fp~y----~g~~~~~~~~~yi~~~F~~~~~  302 (342)
T smart00275      229 STNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDY--FPDY----KGPNDYEAAAKFIKQKFLRLNR  302 (342)
T ss_pred             cchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhcc--CCCC----CCCCCHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999888765  9999    5657899999999999999853


Q ss_pred             hcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHHhhhhhcC
Q 018283          312 QSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAG  356 (358)
Q Consensus       312 ~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~~~~~  356 (358)
                      .     ..+|.+|.|+|||+|+++++.+|+.|.+.|++.+++..|
T Consensus       303 ~-----~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l~~~~  342 (342)
T smart00275      303 N-----SSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNLKDAG  342 (342)
T ss_pred             C-----CCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            2     124789999999999999999999999999999998875

Subunit of G proteins that contains the guanine nucleotide binding site

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-62  Score=430.62  Aligned_cols=335  Identities=31%  Similarity=0.516  Sum_probs=298.6

Q ss_pred             hcccccCC-CCCChhcHHHHHhcHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018283            9 MGLLCSKN-RRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVI   87 (358)
Q Consensus         9 ~~~~~~~~-~~~~~~~~~~~~~s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I   87 (358)
                      ||||.+.. .......+++.++|+.|+++|..++..++...|+||||+|+||||||+||||+||-+||+++|+..-.+-|
T Consensus         1 m~~~~~k~~~~~~~~~~~q~~~s~~i~~ql~~~k~~~~aThrlLLLGagESGKsTIvKQMRILHvnGF~~~EkreKI~dI   80 (379)
T KOG0099|consen    1 MGCLGSKKTEDQRAEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNDEEKREKIQDI   80 (379)
T ss_pred             CCcccCCChhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHhheeccccccchhhhhhhheeeecCCChHHHHHhhHHH
Confidence            78866442 22445567799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhccccccccccccCcchHHHHHHHhhccCCCCCccCcHHHHHHHHHhhcCCCCC---------
Q 018283           88 HANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------  158 (358)
Q Consensus        88 ~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~i~---------  158 (358)
                      +.|+.++|..|+.+|..+.++..     +.+|+++-.++.|.++.+.. ...+++|+.+.++.||+|.||+         
T Consensus        81 ~~Ni~eai~~iv~aM~~l~p~v~-----l~~~~~~~~~dYIls~~~~~-~~~~~~Ef~dHv~~lW~D~Gv~acyeRSnEy  154 (379)
T KOG0099|consen   81 KNNIKEAILTIVGAMSNLVPPVE-----LANPENQFRVDYILSVMNSP-DFDYPPEFYDHVKTLWEDEGVRACYERSNEY  154 (379)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcc-----cCCcccchhHHHHHhcCCCC-cccCCHHHHHHHHHHhhhhhHHHHHhccCcc
Confidence            99999999999999999986542     56899999999999988865 4578999999999999999998         


Q ss_pred             -------------------------cceeeeeeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcE
Q 018283          159 -------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSA  213 (358)
Q Consensus       159 -------------------------~Dil~~~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~  213 (358)
                                               +|||++|.-|+||.++.|      ....++|+++|+|||+.+|++|..+|.++.+
T Consensus       155 qLiDcAqYFLd~~~~i~~~~Y~Ps~qDiLrcRvlTsGIfet~F------qVdkv~FhMfDVGGQRDeRrKWIQcFndvtA  228 (379)
T KOG0099|consen  155 QLIDCAQYFLDKIDVIKQADYVPSDQDILRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQCFNDVTA  228 (379)
T ss_pred             chhhHHHHHHHhhheecccCCCCcHHHHHHhhhhccceeeEEE------eccccceeeeccCCchhhhhhHHHHhcCccE
Confidence                                     999999999999999999      9999999999999999999999999999999


Q ss_pred             EEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCccccccccccc---C--
Q 018283          214 VIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQP---V--  288 (358)
Q Consensus       214 iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~---~--  288 (358)
                      ||||++.|.|++++.|+++.|++.+++.+|+++.++.|+..+.+|||+||+|+..+|+....-+..++||+|..   +  
T Consensus       229 iifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~d  308 (379)
T KOG0099|consen  229 IIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPED  308 (379)
T ss_pred             EEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccc
Confidence            99999999999999999999999999999999999999999999999999999999987644333344776532   1  


Q ss_pred             ---CCCc-ccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHHhhhhhcCCC
Q 018283          289 ---STGK-QEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL  358 (358)
Q Consensus       289 ---~~g~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~~~~~l~  358 (358)
                         ..|. ..+..|.-||...|+.+.   ++....++.+|+|+|||+|++||+.||..+.+.|++.|++++||+
T Consensus       309 a~~es~~d~~v~raK~fird~FlRiS---ta~~Dg~h~CYpHFTcAvDTenIrrVFnDcrdiIqr~hlrqyeLl  379 (379)
T KOG0099|consen  309 ATPESGEDPRVTRAKYFIRDEFLRIS---TASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL  379 (379)
T ss_pred             cCCCCCCChhhHHHHHhhhhhHhhhc---cccCCCceecccceeEeechHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               1122 457788889999999875   344556788999999999999999999999999999999999996

>cd00066 G-alpha G protein alpha subunit

Probab=100.00  E-value=3.1e-59  Score=443.96  Aligned_cols=282  Identities=46%  Similarity=0.716  Sum_probs=261.1

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcchHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEK  127 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  127 (358)
                      +|+||||+|+||||||+|||+++|++||+++|+..|+++|+.|++++|+.|+++++.++++.       .+|++...+..
T Consensus         1 ~klLlLG~geSGKSTi~KQmril~~~gfs~~Er~~~~~~I~~Ni~~~~~~ll~a~~~~~i~~-------~~~~~~~~~~~   73 (317)
T cd00066           1 VKLLLLGAGESGKSTILKQMKILHGDGFSEEELREYRPVIYSNILQSMKALLEAMERLNIPF-------GDPENEKDAKK   73 (317)
T ss_pred             CeEEEecCCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-------CChhhHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999763       35677777777


Q ss_pred             HhhccCCCCCccCcHHHHHHHHHhhcCCCCC----------------------------------cceeeeeeccCceee
Q 018283          128 LSEIGGRLDYPRLTKELAEDIETLWADPAIQ----------------------------------DDVLYARVRTTGVVE  173 (358)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~i~~lw~d~~i~----------------------------------~Dil~~~~~T~gi~e  173 (358)
                      +...........+++++++.|.+||+||+||                                  +|+|++|.||+|+.+
T Consensus        74 i~~~~~~~~~~~~~~~~~~~i~~lW~d~~iq~~~~~r~e~~l~d~~~yf~~~~~ri~~~~y~Pt~~Dil~~r~~T~Gi~~  153 (317)
T cd00066          74 ILSFAPELEEGELPPELAEAIKELWKDPGIQACYDRRNEFQLNDSAKYFLDNLDRISDPDYIPTEQDILRARVKTTGIVE  153 (317)
T ss_pred             HHhccccccccCCCHHHHHHHHHHhCCHHHHHHHHhccccccccchHHHHHhHHHHhCCCCCCChhHheeeecccCCeeE
Confidence            7776655445679999999999999999999                                  999999999999999


Q ss_pred             EeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283          174 IQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE  253 (358)
Q Consensus       174 ~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~  253 (358)
                      ..|      ..+++.+.+||+|||+.+|++|.+||.++++||||+|+|+||+.++++...+++.+++..|+++++++++.
T Consensus       154 ~~f------~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~  227 (317)
T cd00066         154 TKF------TIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA  227 (317)
T ss_pred             EEE------EecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence            999      88899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCC-cccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283          254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTG-KQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD  332 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g-~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d  332 (358)
                      ++|++|++||.|++++|+...|++.|  ||+|    +| +.+++++.+||..+|.++.+.      ..|.+++|+|||+|
T Consensus       228 ~~pill~~NK~D~f~~ki~~~~l~~~--fp~y----~g~~~~~~~~~~~i~~~F~~~~~~------~~~~~~~~~t~a~D  295 (317)
T cd00066         228 NTSIILFLNKKDLFEEKIKKSPLTDY--FPDY----TGPPNDYEEAAKFIRKKFLDLNRN------PNKEIYPHFTCATD  295 (317)
T ss_pred             CCCEEEEccChHHHHHhhcCCCcccc--CCCC----CCCCCCHHHHHHHHHHHHHHhhcC------CCCeEEEEeccccc
Confidence            99999999999999999999999877  9999    56 578999999999999998632      24789999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhh
Q 018283          333 PKLVKKTFKLVDETLRRRHLFE  354 (358)
Q Consensus       333 ~~ni~~vf~~i~~~i~~~~~~~  354 (358)
                      +++|+.+|+.|.+.|+..++++
T Consensus       296 t~~i~~vf~~v~~~i~~~~l~~  317 (317)
T cd00066         296 TENIRFVFDAVKDIILQNNLKD  317 (317)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999998763

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=100.00  E-value=1.9e-58  Score=451.41  Aligned_cols=311  Identities=43%  Similarity=0.736  Sum_probs=269.7

Q ss_pred             hhcHHHHHhcHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018283           21 AADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYD  100 (358)
Q Consensus        21 ~~~~~~~~~s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I~~n~~~~~~~l~~  100 (358)
                      ++++++.+++++|+++++.+++..++.+||||||+|+||||||+|||+++|+++|+++|+..|++.|+.|++++|+.|++
T Consensus        32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~kiLLLG~geSGKSTi~KQ~ril~~~~~~~~E~~~~~~~I~~Nii~~~~~i~~  111 (389)
T PF00503_consen   32 EEEKEQKKRSDDIDRQLEKDKKRSKREIKILLLGSGESGKSTILKQMRILYGPGFSEEERESYRPIIYSNIIQSMKQILE  111 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEESTTSSHHHHHHHHHHHHST---HHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhHHHHHHHHHHHHhhhccceEEEECCCCcchhhHHHHHHHHhCCCCchhhhhcceeeEecCchhhHHHHHH
Confidence            34566888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccccccccccccCcchHHHHHHHhhccCCCCCc---------cCcHHHHHHHHHhhcCCCCC-------------
Q 018283          101 GSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYP---------RLTKELAEDIETLWADPAIQ-------------  158 (358)
Q Consensus       101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~lw~d~~i~-------------  158 (358)
                      ++..++++.........++++....+.+.......+..         .+++++++.|..||+||+||             
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~~~~~~~l~d  191 (389)
T PF00503_consen  112 ALEELGIPFSFSESSQLNEENQEIAEKLKEILDPLDSSEFSLASDDNKFPEELAEDIRSLWKDPGVQECYERRNEFQLPD  191 (389)
T ss_dssp             HHHHTTCH-SSS-TT--STTHHHHHHHHHHHHCTTSTTCTC-----HCHHHHHHHHHHHHHHSHHHHHHHGGGGGST--T
T ss_pred             HHHHcCCCccccccccCCHHHHHHHHHHHhhhccccccccccccccccCCHHHHHHHHHHHCChhHHHHHHhhhcccccc
Confidence            99999987543222333577777777777765554332         47899999999999999999             


Q ss_pred             ---------------------cceeeeeeccCceeeEeeccCCCCcc-cceEEEEEecCCCchhhhhHhhhhcCCcEEEE
Q 018283          159 ---------------------DDVLYARVRTTGVVEIQFSPVGEHKK-SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIF  216 (358)
Q Consensus       159 ---------------------~Dil~~~~~T~gi~e~~~~~~~~~~~-~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIf  216 (358)
                                           +|||++|.+|+||.++.|      .. ++..+.++|+|||+.+|++|.+||.++++|||
T Consensus       192 ~~~YFl~~l~RI~~~~Y~PT~~DIl~~r~~T~Gi~e~~f------~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif  265 (389)
T PF00503_consen  192 NAKYFLDNLDRIAQPDYIPTDEDILRCRVKTTGITEIDF------NFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIF  265 (389)
T ss_dssp             THHHHHTTHHHHHSTTB---HHHHHHS----SSEEEEEE------EE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEE
T ss_pred             cHHHHhhhhhhhcCCCccCCCCCeeeecCCCCCeeEEEE------EeecccccceecCCCCchhhhhHHHHhccccEEEE
Confidence                                 899999999999999999      87 99999999999999999999999999999999


Q ss_pred             EEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCC-CcccccccccccCCCCc--c
Q 018283          217 CAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVP-LNVCEWFKDYQPVSTGK--Q  293 (358)
Q Consensus       217 v~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~-l~~~~~f~~y~~~~~g~--~  293 (358)
                      |+|+|+||++++|+...|++.+++.+|+++++++++.++|++||+||.|++++|+...+ +..+  ||+|    +|+  .
T Consensus       266 ~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~--fp~y----~g~~~~  339 (389)
T PF00503_consen  266 VVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKY--FPDY----TGDRPN  339 (389)
T ss_dssp             EEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGT--STTG----GSH-TS
T ss_pred             eecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHccCCCchHhh--CCCC----CCCccc
Confidence            99999999999999999999999999999999999999999999999999999999988 6655  8888    575  6


Q ss_pred             cHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHH
Q 018283          294 EIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       294 ~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                      +++.+.+||.++|.+..+....    .+.+++|+|||+|+++|+.+|+.|.+.|
T Consensus       340 ~~~~~~~~i~~~f~~~~~~~~~----~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  340 DVDSAIKFIKNKFLRLNRNNSP----SRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             SHHHHHHHHHHHHHCTHSTTTT----CS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCCC----CcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            8999999999999998753321    1789999999999999999999999876

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4e-29  Score=213.86  Aligned_cols=136  Identities=23%  Similarity=0.272  Sum_probs=105.7

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      ..|.|+....-+..-  +++.++++||||+||++||....+||++|++||||+|+          ++..+|.....|+.+
T Consensus        39 ~sTIGVDf~~rt~e~--~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDi----------T~~~SF~~v~~Wi~E  106 (205)
T KOG0084|consen   39 ISTIGVDFKIRTVEL--DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDI----------TKQESFNNVKRWIQE  106 (205)
T ss_pred             cceeeeEEEEEEeee--cceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEc----------ccHHHhhhHHHHHHH
Confidence            456676542221111  78899999999999999999999999999999999999          567788888888888


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEE-
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFK-  324 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~-  324 (358)
                      +-.. ...++|.+|||||+|+.+.+.                     ...++|..|     ..           ...+. 
T Consensus       107 i~~~-~~~~v~~lLVGNK~Dl~~~~~---------------------v~~~~a~~f-----a~-----------~~~~~~  148 (205)
T KOG0084|consen  107 IDRY-ASENVPKLLVGNKCDLTEKRV---------------------VSTEEAQEF-----AD-----------ELGIPI  148 (205)
T ss_pred             hhhh-ccCCCCeEEEeeccccHhhee---------------------cCHHHHHHH-----HH-----------hcCCcc
Confidence            7553 456789999999999988765                     234556444     21           12344 


Q ss_pred             EEEeeccChhhHHHHHHHHHHHHHHhh
Q 018283          325 IYRTTALDPKLVKKTFKLVDETLRRRH  351 (358)
Q Consensus       325 ~~~tSA~d~~ni~~vf~~i~~~i~~~~  351 (358)
                      +++||||++.||+++|..+...++...
T Consensus       149 f~ETSAK~~~NVe~~F~~la~~lk~~~  175 (205)
T KOG0084|consen  149 FLETSAKDSTNVEDAFLTLAKELKQRK  175 (205)
T ss_pred             eeecccCCccCHHHHHHHHHHHHHHhc
Confidence            889999999999999999999987653

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=6.4e-27  Score=199.63  Aligned_cols=121  Identities=19%  Similarity=0.278  Sum_probs=101.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....++|.|||||||++|+.+-+.|||+|+++|.|||+          ++..+|..+..|++++-.. ..+++-|.|+||
T Consensus        50 ~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDi----------t~~~SF~~aK~WvkeL~~~-~~~~~vialvGN  118 (200)
T KOG0092|consen   50 DDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDI----------TDEESFEKAKNWVKELQRQ-ASPNIVIALVGN  118 (200)
T ss_pred             CCcEEEEEEEEcCCcccccccccceecCCcEEEEEEec----------ccHHHHHHHHHHHHHHHhh-CCCCeEEEEecc
Confidence            44579999999999999999999999999999999999          6789999999999998554 347888999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+||.+.|.                     ...++|..|-.                .....+++||||++.||.++|..
T Consensus       119 K~DL~~~R~---------------------V~~~ea~~yAe----------------~~gll~~ETSAKTg~Nv~~if~~  161 (200)
T KOG0092|consen  119 KADLLERRE---------------------VEFEEAQAYAE----------------SQGLLFFETSAKTGENVNEIFQA  161 (200)
T ss_pred             hhhhhhccc---------------------ccHHHHHHHHH----------------hcCCEEEEEecccccCHHHHHHH
Confidence            999987543                     44566766622                23478899999999999999999


Q ss_pred             HHHHHHHhh
Q 018283          343 VDETLRRRH  351 (358)
Q Consensus       343 i~~~i~~~~  351 (358)
                      |.+.+....
T Consensus       162 Ia~~lp~~~  170 (200)
T KOG0092|consen  162 IAEKLPCSD  170 (200)
T ss_pred             HHHhccCcc
Confidence            999987543

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.94  E-value=1e-25  Score=196.74  Aligned_cols=134  Identities=22%  Similarity=0.377  Sum_probs=109.6

Q ss_pred             eeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH
Q 018283          165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD  244 (358)
Q Consensus       165 ~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~  244 (358)
                      ..||.|+....+      ...++.+.+||+||+..+|+.|.+||++++++|||+|.          ++.+++.++.+.+.
T Consensus        42 ~~pT~g~~~~~i------~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDs----------sd~~~l~e~~~~L~  105 (175)
T PF00025_consen   42 TIPTIGFNIEEI------KYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDS----------SDPERLQEAKEELK  105 (175)
T ss_dssp             EEEESSEEEEEE------EETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEET----------TGGGGHHHHHHHHH
T ss_pred             cCccccccccee------eeCcEEEEEEeccccccccccceeeccccceeEEEEec----------ccceeecccccchh
Confidence            369999998888      77889999999999999999999999999999999997          45678999999999


Q ss_pred             HHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEE
Q 018283          245 WVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFK  324 (358)
Q Consensus       245 ~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~  324 (358)
                      .+++++...++|+++++||+|+.+.                       ...++....+.-.  .+     .   .++.+.
T Consensus       106 ~ll~~~~~~~~piLIl~NK~D~~~~-----------------------~~~~~i~~~l~l~--~l-----~---~~~~~~  152 (175)
T PF00025_consen  106 ELLNDPELKDIPILILANKQDLPDA-----------------------MSEEEIKEYLGLE--KL-----K---NKRPWS  152 (175)
T ss_dssp             HHHTSGGGTTSEEEEEEESTTSTTS-----------------------STHHHHHHHTTGG--GT-----T---SSSCEE
T ss_pred             hhcchhhcccceEEEEeccccccCc-----------------------chhhHHHhhhhhh--hc-----c---cCCceE
Confidence            9999888889999999999998643                       1112222211100  00     0   256789


Q ss_pred             EEEeeccChhhHHHHHHHHHHHH
Q 018283          325 IYRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       325 ~~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                      ++.+||++|+|+.++|+|+.+.|
T Consensus       153 v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  153 VFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             EEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             EEeeeccCCcCHHHHHHHHHhcC
Confidence            99999999999999999999876

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.94  E-value=7.9e-26  Score=198.54  Aligned_cols=135  Identities=19%  Similarity=0.336  Sum_probs=104.0

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|+....+      +...+.+++||++||+.++.+|.+||++++++|||+|++          +..++.++..++..
T Consensus        46 ~pt~g~~~~~~------~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s----------~~~s~~~~~~~l~~  109 (181)
T PLN00223         46 IPTIGFNVETV------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHR  109 (181)
T ss_pred             cCCcceeEEEE------EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCC----------cHHHHHHHHHHHHH
Confidence            36777766556      667899999999999999999999999999999999984          45678888888888


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +++....+++|++|++||+|+.++.                       ..++..+.+     .+      +....+.+++
T Consensus       110 ~l~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~~~~~l-----~l------~~~~~~~~~~  155 (181)
T PLN00223        110 MLNEDELRDAVLLVFANKQDLPNAM-----------------------NAAEITDKL-----GL------HSLRQRHWYI  155 (181)
T ss_pred             HhcCHhhCCCCEEEEEECCCCCCCC-----------------------CHHHHHHHh-----Cc------cccCCCceEE
Confidence            8877666789999999999985431                       112211111     11      0002356777


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHHh
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRRR  350 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~~  350 (358)
                      +.|||++|+||.++|+++.+.+.++
T Consensus       156 ~~~Sa~~g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        156 QSTCATSGEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             EeccCCCCCCHHHHHHHHHHHHhhc
Confidence            7899999999999999999988764

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.1e-26  Score=198.84  Aligned_cols=120  Identities=14%  Similarity=0.215  Sum_probs=98.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ++..+.+++|||+||++||.+...||++|.++++|||+          ++..+++....|++.+-.+ ...++|++||||
T Consensus        57 ~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDi----------tne~Sfeni~~W~~~I~e~-a~~~v~~~LvGN  125 (207)
T KOG0078|consen   57 DGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDI----------TNEKSFENIRNWIKNIDEH-ASDDVVKILVGN  125 (207)
T ss_pred             CCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEc----------cchHHHHHHHHHHHHHHhh-CCCCCcEEEeec
Confidence            77889999999999999999999999999999999999          5667888888877777554 345899999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..+|.                     ...+++.++..                +..+.+++|||+++.||.++|..
T Consensus       126 K~D~~~~R~---------------------V~~e~ge~lA~----------------e~G~~F~EtSAk~~~NI~eaF~~  168 (207)
T KOG0078|consen  126 KCDLEEKRQ---------------------VSKERGEALAR----------------EYGIKFFETSAKTNFNIEEAFLS  168 (207)
T ss_pred             ccccccccc---------------------ccHHHHHHHHH----------------HhCCeEEEccccCCCCHHHHHHH
Confidence            999987553                     22344443311                23488999999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +++.|+++
T Consensus       169 La~~i~~k  176 (207)
T KOG0078|consen  169 LARDILQK  176 (207)
T ss_pred             HHHHHHhh
Confidence            99999864

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.2e-26  Score=195.83  Aligned_cols=125  Identities=22%  Similarity=0.417  Sum_probs=113.0

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|++...+      ..++++|++||+|||+++|+.|.+||++++++|||+|.          +++.|+.++.+.+..
T Consensus        46 vPTiGfnVE~v------~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS----------~Dr~Ri~eak~eL~~  109 (181)
T KOG0070|consen   46 VPTIGFNVETV------EYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDS----------SDRERIEEAKEELHR  109 (181)
T ss_pred             CCccccceeEE------EEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeC----------CcHHHHHHHHHHHHH
Confidence            69999998888      88899999999999999999999999999999999995          789999999999999


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhh--------hhccCCCcccccccccccCCCCcccHHHHHHHHHHHHH
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEK--------KVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFE  307 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~e--------ki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~  307 (358)
                      +++++.+.++|+++++||+|+..+        ++.-..+..++|+.+-+++.+| +++.++.+|+.+...
T Consensus       110 ~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G-~GL~egl~wl~~~~~  178 (181)
T KOG0070|consen  110 MLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISG-EGLYEGLDWLSNNLK  178 (181)
T ss_pred             HHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccc-ccHHHHHHHHHHHHh
Confidence            999998899999999999998754        3334567778999999999999 999999999887653

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.93  E-value=2e-25  Score=185.26  Aligned_cols=136  Identities=22%  Similarity=0.355  Sum_probs=110.1

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|+.....      ..+.+++++||+|||...|+.|.+||.+++++|||||.          .+..+|+++...+.+
T Consensus        45 ~pt~gf~Iktl------~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDs----------sD~~r~~e~~~~L~~  108 (185)
T KOG0073|consen   45 SPTLGFQIKTL------EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDS----------SDRMRMQECKQELTE  108 (185)
T ss_pred             CCccceeeEEE------EecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEEC----------chHHHHHHHHHHHHH
Confidence            58888877777      77899999999999999999999999999999999997          578999999999999


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      ++.......+|++|++||+|+..+ +..                   ..+..+.+.     .++.        +.+.+..
T Consensus       109 lL~eerlaG~~~Lvlank~dl~~~-l~~-------------------~~i~~~~~L-----~~l~--------ks~~~~l  155 (185)
T KOG0073|consen  109 LLVEERLAGAPLLVLANKQDLPGA-LSL-------------------EEISKALDL-----EELA--------KSHHWRL  155 (185)
T ss_pred             HHhhhhhcCCceEEEEecCcCccc-cCH-------------------HHHHHhhCH-----HHhc--------cccCceE
Confidence            998888889999999999999633 100                   112222110     1111        2456788


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHHh
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRRR  350 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~~  350 (358)
                      .-+||.+|+++.+.|+|+.+.+..+
T Consensus       156 ~~cs~~tge~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  156 VKCSAVTGEDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             EEEeccccccHHHHHHHHHHHHHHH
Confidence            8899999999999999999999874

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=8.5e-26  Score=182.68  Aligned_cols=123  Identities=16%  Similarity=0.374  Sum_probs=110.8

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||+|++...+      ..+++.|++||+|||.+.|++|.|||.+..++|||+|.          .+.++++++.+.+.+
T Consensus        46 ipTvGFnvetV------tykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Ds----------a~~dr~eeAr~ELh~  109 (180)
T KOG0071|consen   46 IPTVGFNVETV------TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDS----------ADRDRIEEARNELHR  109 (180)
T ss_pred             ccccceeEEEE------EeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEec----------cchhhHHHHHHHHHH
Confidence            58999998888      88999999999999999999999999999999999996          567999999999999


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhh--------hccCCCcccccccccccCCCCcccHHHHHHHHHHH
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKK--------VLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKK  305 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~ek--------i~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~  305 (358)
                      +++++...++|+++++||+|+..++        +.-.+++...|.-+.+++.+| +++.++..|+.+.
T Consensus       110 ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~g-dgL~eglswlsnn  176 (180)
T KOG0071|consen  110 IINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSG-DGLKEGLSWLSNN  176 (180)
T ss_pred             HhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccc-hhHHHHHHHHHhh
Confidence            9999999999999999999998763        222468889999999888888 8999999998764

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.93  E-value=1.3e-25  Score=189.79  Aligned_cols=133  Identities=14%  Similarity=0.204  Sum_probs=100.5

Q ss_pred             eeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283          172 VEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  251 (358)
Q Consensus       172 ~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~  251 (358)
                      +++.+      +.+.++++|||||||++|+++--.+|+++|++++|+|+..       ..+.+.+..|.+.|-.-.+-..
T Consensus        49 Kev~V------d~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~-------~~Sfe~L~~Wr~EFl~qa~~~~  115 (210)
T KOG0394|consen   49 KEVQV------DDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNN-------PKSFENLENWRKEFLIQASPQD  115 (210)
T ss_pred             eEEEE------cCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCC-------hhhhccHHHHHHHHHHhcCCCC
Confidence            45666      7888999999999999999999999999999999999831       2334555555555543322222


Q ss_pred             CCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeecc
Q 018283          252 FEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL  331 (358)
Q Consensus       252 ~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~  331 (358)
                      ...-|+||+|||.|+...+-..                   ..-..|..|...               ++.+.+|+||||
T Consensus       116 Pe~FPFVilGNKiD~~~~~~r~-------------------VS~~~Aq~WC~s---------------~gnipyfEtSAK  161 (210)
T KOG0394|consen  116 PETFPFVILGNKIDVDGGKSRQ-------------------VSEKKAQTWCKS---------------KGNIPYFETSAK  161 (210)
T ss_pred             CCcccEEEEcccccCCCCccce-------------------eeHHHHHHHHHh---------------cCCceeEEeccc
Confidence            2356999999999996532111                   445778888553               346889999999


Q ss_pred             ChhhHHHHHHHHHHHHHHhh
Q 018283          332 DPKLVKKTFKLVDETLRRRH  351 (358)
Q Consensus       332 d~~ni~~vf~~i~~~i~~~~  351 (358)
                      +..||.++|+.+....+...
T Consensus       162 ~~~NV~~AFe~ia~~aL~~E  181 (210)
T KOG0394|consen  162 EATNVDEAFEEIARRALANE  181 (210)
T ss_pred             ccccHHHHHHHHHHHHHhcc
Confidence            99999999999999988754

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.1e-25  Score=181.87  Aligned_cols=120  Identities=15%  Similarity=0.170  Sum_probs=100.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      .++.++++||||+||++||+....||+++.+.++|+|+          ++++++++.-.|+..+.. ...+++.|+|++|
T Consensus        54 GgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~----------TsrdsfnaLtnWL~DaR~-lAs~nIvviL~Gn  122 (214)
T KOG0086|consen   54 GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDI----------TSRDSFNALTNWLTDART-LASPNIVVILCGN  122 (214)
T ss_pred             cCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEec----------cchhhHHHHHHHHHHHHh-hCCCcEEEEEeCC
Confidence            67889999999999999999999999999999999998          577777777777766633 3456889999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.||..++-                     ....+|..|.                .++.+-+++|||++|+||++.|-.
T Consensus       123 KkDL~~~R~---------------------VtflEAs~Fa----------------qEnel~flETSa~TGeNVEEaFl~  165 (214)
T KOG0086|consen  123 KKDLDPERE---------------------VTFLEASRFA----------------QENELMFLETSALTGENVEEAFLK  165 (214)
T ss_pred             hhhcChhhh---------------------hhHHHHHhhh----------------cccceeeeeecccccccHHHHHHH
Confidence            999977653                     3456666662                245678899999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      ++.+|+.+
T Consensus       166 c~~tIl~k  173 (214)
T KOG0086|consen  166 CARTILNK  173 (214)
T ss_pred             HHHHHHHH
Confidence            99999865

>cd04120 Rab12 Rab12 subfamily

Probab=99.93  E-value=3.5e-25  Score=197.62  Aligned_cols=121  Identities=13%  Similarity=0.194  Sum_probs=91.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+++|||+||++++.+|..||++++++|+|||+          ++..++.+...|+..+ +.....++|++||+|
T Consensus        45 ~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDv----------td~~Sf~~l~~w~~~i-~~~~~~~~piilVgN  113 (202)
T cd04120          45 RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDI----------TKKETFDDLPKWMKMI-DKYASEDAELLLVGN  113 (202)
T ss_pred             CCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHH-HHhCCCCCcEEEEEE
Confidence            55679999999999999999999999999999999998          4667777777766654 333345799999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+||.+++.                     ....++.+|..+               ...+.+++|||++|+||.++|.+
T Consensus       114 K~DL~~~~~---------------------v~~~~~~~~a~~---------------~~~~~~~etSAktg~gV~e~F~~  157 (202)
T cd04120         114 KLDCETDRE---------------------ISRQQGEKFAQQ---------------ITGMRFCEASAKDNFNVDEIFLK  157 (202)
T ss_pred             Ccccccccc---------------------cCHHHHHHHHHh---------------cCCCEEEEecCCCCCCHHHHHHH
Confidence            999964321                     112333333110               01256789999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+.+.
T Consensus       158 l~~~~~~~  165 (202)
T cd04120         158 LVDDILKK  165 (202)
T ss_pred             HHHHHHHh
Confidence            99988653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=6.8e-25  Score=187.29  Aligned_cols=136  Identities=19%  Similarity=0.188  Sum_probs=106.6

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .+|+|+.....+..-  ....++|++|||+|||+||.+.+.|+++++++|.|+|+          ++.++|+...+|++.
T Consensus        52 qATIGiDFlskt~~l--~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDi----------t~~~Sfe~t~kWi~d  119 (221)
T KOG0094|consen   52 QATIGIDFLSKTMYL--EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDI----------TDRNSFENTSKWIED  119 (221)
T ss_pred             cceeeeEEEEEEEEE--cCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEec----------cccchHHHHHHHHHH
Confidence            578888764332211  56789999999999999999999999999999999999          688999999999999


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +.+.....++-|+|||||.||.+++-.                     ..+++-.    +-.            +....+
T Consensus       120 v~~e~gs~~viI~LVGnKtDL~dkrqv---------------------s~eEg~~----kAk------------el~a~f  162 (221)
T KOG0094|consen  120 VRRERGSDDVIIFLVGNKTDLSDKRQV---------------------SIEEGER----KAK------------ELNAEF  162 (221)
T ss_pred             HHhccCCCceEEEEEcccccccchhhh---------------------hHHHHHH----HHH------------HhCcEE
Confidence            988777667899999999999876431                     1122221    001            123567


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHHh
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRRR  350 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~~  350 (358)
                      .+|||+.|.||+.+|..|...+...
T Consensus       163 ~etsak~g~NVk~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  163 IETSAKAGENVKQLFRRIAAALPGM  187 (221)
T ss_pred             EEecccCCCCHHHHHHHHHHhccCc
Confidence            8899999999999999988776543

>cd04121 Rab40 Rab40 subfamily

Probab=99.93  E-value=6.3e-25  Score=194.05  Aligned_cols=119  Identities=13%  Similarity=0.143  Sum_probs=96.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+++|||+||+.++.+|..||++++++|+|+|+          ++..++.+...|+..+...  .+++|++||||
T Consensus        51 ~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~----------t~~~Sf~~~~~w~~~i~~~--~~~~piilVGN  118 (189)
T cd04121          51 DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDI----------TNRWSFDGIDRWIKEIDEH--APGVPKILVGN  118 (189)
T ss_pred             CCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence            55678999999999999999999999999999999998          5678888888888887543  35799999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.||...+.                     ...+++..|..                ...+.+++|||+++.||+++|++
T Consensus       119 K~DL~~~~~---------------------v~~~~~~~~a~----------------~~~~~~~e~SAk~g~~V~~~F~~  161 (189)
T cd04121         119 RLHLAFKRQ---------------------VATEQAQAYAE----------------RNGMTFFEVSPLCNFNITESFTE  161 (189)
T ss_pred             CccchhccC---------------------CCHHHHHHHHH----------------HcCCEEEEecCCCCCCHHHHHHH
Confidence            999964321                     22445555532                12367899999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +++.++..
T Consensus       162 l~~~i~~~  169 (189)
T cd04121         162 LARIVLMR  169 (189)
T ss_pred             HHHHHHHh
Confidence            99988753

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.92  E-value=1.7e-25  Score=184.95  Aligned_cols=117  Identities=16%  Similarity=0.202  Sum_probs=94.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHH---HHHHHHHHHcCCCCCCCcEEE
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME---TKELFDWVLKQPCFEKTSFML  259 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~---~~~~~~~i~~~~~~~~~~iil  259 (358)
                      +++.+++.||||+||++||.+.+.||+++.++|.|+|++          .++.|..   |+..++....+   +++-.+|
T Consensus        56 dg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT----------~Rdtf~kLd~W~~Eld~Ystn---~diikml  122 (209)
T KOG0080|consen   56 DGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVT----------SRDTFVKLDIWLKELDLYSTN---PDIIKML  122 (209)
T ss_pred             cCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEcc----------chhhHHhHHHHHHHHHhhcCC---ccHhHhh
Confidence            888999999999999999999999999999999999994          4555444   44444444443   4678899


Q ss_pred             EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283          260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT  339 (358)
Q Consensus       260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v  339 (358)
                      |+||.|-..+|.                     .+.+++++|-+                ++.+-++++||++.+||+.+
T Consensus       123 VgNKiDkes~R~---------------------V~reEG~kfAr----------------~h~~LFiE~SAkt~~~V~~~  165 (209)
T KOG0080|consen  123 VGNKIDKESERV---------------------VDREEGLKFAR----------------KHRCLFIECSAKTRENVQCC  165 (209)
T ss_pred             hcccccchhccc---------------------ccHHHHHHHHH----------------hhCcEEEEcchhhhccHHHH
Confidence            999999755543                     55688888722                34578899999999999999


Q ss_pred             HHHHHHHHHH
Q 018283          340 FKLVDETLRR  349 (358)
Q Consensus       340 f~~i~~~i~~  349 (358)
                      |++++..|++
T Consensus       166 FeelveKIi~  175 (209)
T KOG0080|consen  166 FEELVEKIIE  175 (209)
T ss_pred             HHHHHHHHhc
Confidence            9999999985

>cd04149 Arf6 Arf6 subfamily

Probab=99.92  E-value=8e-25  Score=189.76  Aligned_cols=129  Identities=18%  Similarity=0.311  Sum_probs=97.3

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  246 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i  246 (358)
                      ||+|+....+      ....+.+++|||+|+++++..|..||++++++|||+|++          +..++.++..++..+
T Consensus        39 ~t~g~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t----------~~~s~~~~~~~~~~~  102 (168)
T cd04149          39 PTVGFNVETV------TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSA----------DRDRIDEARQELHRI  102 (168)
T ss_pred             CCcccceEEE------EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCC----------chhhHHHHHHHHHHH
Confidence            5666554444      456789999999999999999999999999999999984          456788888999888


Q ss_pred             HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283          247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY  326 (358)
Q Consensus       247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~  326 (358)
                      ++.....++|++|++||+|+.+.                       ...+++.+++...  .      .   ..+.+.++
T Consensus       103 ~~~~~~~~~piilv~NK~Dl~~~-----------------------~~~~~i~~~~~~~--~------~---~~~~~~~~  148 (168)
T cd04149         103 INDREMRDALLLVFANKQDLPDA-----------------------MKPHEIQEKLGLT--R------I---RDRNWYVQ  148 (168)
T ss_pred             hcCHhhcCCcEEEEEECcCCccC-----------------------CCHHHHHHHcCCC--c------c---CCCcEEEE
Confidence            87655668999999999998532                       1122333321100  0      0   12446788


Q ss_pred             EeeccChhhHHHHHHHHHH
Q 018283          327 RTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       327 ~tSA~d~~ni~~vf~~i~~  345 (358)
                      +|||++++||.++|+++.+
T Consensus       149 ~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         149 PSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             EeeCCCCCChHHHHHHHhc
Confidence            9999999999999999865

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=6.6e-25  Score=185.92  Aligned_cols=129  Identities=16%  Similarity=0.218  Sum_probs=106.5

Q ss_pred             CceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHc
Q 018283          169 TGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK  248 (358)
Q Consensus       169 ~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~  248 (358)
                      .|...+.+      +.+.++++||||+||++||+....||+++.++|+|+|+          +.+++|...-.|+..+.+
T Consensus        43 fg~r~~~i------d~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydi----------t~r~sF~hL~~wL~D~rq  106 (216)
T KOG0098|consen   43 FGARMVTI------DGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDI----------TRRESFNHLTSWLEDARQ  106 (216)
T ss_pred             eceeEEEE------cCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEc----------cchhhHHHHHHHHHHHHH
Confidence            34556777      89999999999999999999999999999999999999          567788887888888866


Q ss_pred             CCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEe
Q 018283          249 QPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRT  328 (358)
Q Consensus       249 ~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~t  328 (358)
                      +. .+|..|+|++||+||...|.                     .+-+|+-.|-+                .+.+-+.+|
T Consensus       107 ~~-~~NmvImLiGNKsDL~~rR~---------------------Vs~EEGeaFA~----------------ehgLifmET  148 (216)
T KOG0098|consen  107 HS-NENMVIMLIGNKSDLEARRE---------------------VSKEEGEAFAR----------------EHGLIFMET  148 (216)
T ss_pred             hc-CCCcEEEEEcchhhhhcccc---------------------ccHHHHHHHHH----------------HcCceeehh
Confidence            53 46899999999999976542                     44566666633                234667799


Q ss_pred             eccChhhHHHHHHHHHHHHHHhh
Q 018283          329 TALDPKLVKKTFKLVDETLRRRH  351 (358)
Q Consensus       329 SA~d~~ni~~vf~~i~~~i~~~~  351 (358)
                      ||++++||+++|......|+++.
T Consensus       149 Sakt~~~VEEaF~nta~~Iy~~~  171 (216)
T KOG0098|consen  149 SAKTAENVEEAFINTAKEIYRKI  171 (216)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999998754

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.92  E-value=1.4e-24  Score=189.36  Aligned_cols=132  Identities=21%  Similarity=0.338  Sum_probs=99.0

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  246 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i  246 (358)
                      ||+|+....+      ....+.+.+||++|++.++.+|..||++++++|||+|++          +..++.++.+++..+
T Consensus        43 ~t~~~~~~~~------~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t----------~~~s~~~~~~~l~~~  106 (175)
T smart00177       43 PTIGFNVETV------TYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSN----------DRDRIDEAREELHRM  106 (175)
T ss_pred             CccccceEEE------EECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECC----------CHHHHHHHHHHHHHH
Confidence            5666554444      456789999999999999999999999999999999984          556788899999998


Q ss_pred             HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283          247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY  326 (358)
Q Consensus       247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~  326 (358)
                      ++.....++|++|++||+|+.+..                       ..++....    +. +   ...   ..+.++++
T Consensus       107 ~~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~i~~~----~~-~---~~~---~~~~~~~~  152 (175)
T smart00177      107 LNEDELRDAVILVFANKQDLPDAM-----------------------KAAEITEK----LG-L---HSI---RDRNWYIQ  152 (175)
T ss_pred             hhCHhhcCCcEEEEEeCcCcccCC-----------------------CHHHHHHH----hC-c---ccc---CCCcEEEE
Confidence            876555679999999999985421                       01111111    00 0   001   24567778


Q ss_pred             EeeccChhhHHHHHHHHHHHHH
Q 018283          327 RTTALDPKLVKKTFKLVDETLR  348 (358)
Q Consensus       327 ~tSA~d~~ni~~vf~~i~~~i~  348 (358)
                      .|||++|+||.++|+++.+.+.
T Consensus       153 ~~Sa~~g~gv~e~~~~l~~~~~  174 (175)
T smart00177      153 PTCATSGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             EeeCCCCCCHHHHHHHHHHHhc
Confidence            8999999999999999987753

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.92  E-value=2.1e-24  Score=189.66  Aligned_cols=134  Identities=17%  Similarity=0.316  Sum_probs=99.8

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  246 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i  246 (358)
                      ||.|.....+      +...+.+++||++|+++++..|..||++++++|||+|++          +.+++.++..++..+
T Consensus        47 ~T~~~~~~~~------~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t----------~~~s~~~~~~~l~~~  110 (182)
T PTZ00133         47 PTIGFNVETV------EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSN----------DRERIGDAREELERM  110 (182)
T ss_pred             CccccceEEE------EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCC----------CHHHHHHHHHHHHHH
Confidence            5556554444      556789999999999999999999999999999999984          566788888888888


Q ss_pred             HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283          247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY  326 (358)
Q Consensus       247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~  326 (358)
                      +......++|++|++||.|+.+..                       ..++....+...        ..   ..+.++++
T Consensus       111 ~~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~i~~~l~~~--------~~---~~~~~~~~  156 (182)
T PTZ00133        111 LSEDELRDAVLLVFANKQDLPNAM-----------------------STTEVTEKLGLH--------SV---RQRNWYIQ  156 (182)
T ss_pred             HhCHhhcCCCEEEEEeCCCCCCCC-----------------------CHHHHHHHhCCC--------cc---cCCcEEEE
Confidence            776556678999999999985421                       111111111000        00   13456777


Q ss_pred             EeeccChhhHHHHHHHHHHHHHHh
Q 018283          327 RTTALDPKLVKKTFKLVDETLRRR  350 (358)
Q Consensus       327 ~tSA~d~~ni~~vf~~i~~~i~~~  350 (358)
                      .|||++++|++++|+++.+.+.++
T Consensus       157 ~~Sa~tg~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        157 GCCATTAQGLYEGLDWLSANIKKS  180 (182)
T ss_pred             eeeCCCCCCHHHHHHHHHHHHHHh
Confidence            899999999999999999887653

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.92  E-value=3e-24  Score=184.33  Aligned_cols=129  Identities=21%  Similarity=0.343  Sum_probs=95.9

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  246 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i  246 (358)
                      ||.|.....+      ....+.+.+||++||++++..|..||++++++|||+|++          +..++.++.+++..+
T Consensus        30 pt~g~~~~~~------~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~----------~~~s~~~~~~~~~~~   93 (159)
T cd04150          30 PTIGFNVETV------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRERIGEAREELQRM   93 (159)
T ss_pred             CCCCcceEEE------EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCC----------CHHHHHHHHHHHHHH
Confidence            5666554444      556789999999999999999999999999999999984          566788888889888


Q ss_pred             HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283          247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY  326 (358)
Q Consensus       247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~  326 (358)
                      +..+...++|++|++||+|+....                       ..++...    ++ .+   +..   ..+.+.++
T Consensus        94 ~~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~i~~----~~-~~---~~~---~~~~~~~~  139 (159)
T cd04150          94 LNEDELRDAVLLVFANKQDLPNAM-----------------------SAAEVTD----KL-GL---HSL---RNRNWYIQ  139 (159)
T ss_pred             HhcHHhcCCCEEEEEECCCCCCCC-----------------------CHHHHHH----Hh-Cc---ccc---CCCCEEEE
Confidence            776556678999999999985320                       0111111    11 00   000   13456778


Q ss_pred             EeeccChhhHHHHHHHHHH
Q 018283          327 RTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       327 ~tSA~d~~ni~~vf~~i~~  345 (358)
                      .+||++|+||+++|+++.+
T Consensus       140 ~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         140 ATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             EeeCCCCCCHHHHHHHHhc
Confidence            8999999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04158 ARD1 ARD1 subfamily

Probab=99.91  E-value=1e-23  Score=182.69  Aligned_cols=136  Identities=20%  Similarity=0.328  Sum_probs=102.9

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|.....+      +...+.+.+||++|++.++..|..||++++++|||+|++          +.+++.++..++..
T Consensus        28 ~~T~~~~~~~~------~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s----------~~~s~~~~~~~~~~   91 (169)
T cd04158          28 IPTIGFNVETV------EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS----------HRDRVSEAHSELAK   91 (169)
T ss_pred             CCcCceeEEEE------EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC----------cHHHHHHHHHHHHH
Confidence            46666665555      567899999999999999999999999999999999984          56788888899999


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +.+.....+.|++|++||+|+.++                       .+.+++.+++.  +...     .   ..+.+.+
T Consensus        92 ~~~~~~~~~~piilv~NK~Dl~~~-----------------------~~~~~~~~~~~--~~~~-----~---~~~~~~~  138 (169)
T cd04158          92 LLTEKELRDALLLIFANKQDVAGA-----------------------LSVEEMTELLS--LHKL-----C---CGRSWYI  138 (169)
T ss_pred             HhcChhhCCCCEEEEEeCcCcccC-----------------------CCHHHHHHHhC--Cccc-----c---CCCcEEE
Confidence            887655567899999999998532                       12233333320  1000     0   1234677


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHHh
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRRR  350 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~~  350 (358)
                      ++|||+++.||+++|+++.+.+...
T Consensus       139 ~~~Sa~~g~gv~~~f~~l~~~~~~~  163 (169)
T cd04158         139 QGCDARSGMGLYEGLDWLSRQLVAA  163 (169)
T ss_pred             EeCcCCCCCCHHHHHHHHHHHHhhc
Confidence            8899999999999999998877643

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.91  E-value=1.4e-24  Score=177.05  Aligned_cols=122  Identities=18%  Similarity=0.245  Sum_probs=105.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ++..++++|||++||++||.+...||++.+++|.|+|+          ++.++|.....|++++-++.  +..|-+||||
T Consensus        53 ~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDV----------Tn~ESF~Nv~rWLeei~~nc--dsv~~vLVGN  120 (198)
T KOG0079|consen   53 NGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDV----------TNGESFNNVKRWLEEIRNNC--DSVPKVLVGN  120 (198)
T ss_pred             CCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEEC----------cchhhhHhHHHHHHHHHhcC--ccccceeccc
Confidence            78899999999999999999999999999999999998          67899999999999997763  3689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+.+.|.                     .+.++|..|-..                -.+.+|+|||++.+|++..|..
T Consensus       121 K~d~~~Rrv---------------------V~t~dAr~~A~~----------------mgie~FETSaKe~~NvE~mF~c  163 (198)
T KOG0079|consen  121 KNDDPERRV---------------------VDTEDARAFALQ----------------MGIELFETSAKENENVEAMFHC  163 (198)
T ss_pred             CCCCcccee---------------------eehHHHHHHHHh----------------cCchheehhhhhcccchHHHHH
Confidence            999987765                     345667776322                3477899999999999999999


Q ss_pred             HHHHHHHhhhh
Q 018283          343 VDETLRRRHLF  353 (358)
Q Consensus       343 i~~~i~~~~~~  353 (358)
                      |.+..++..+.
T Consensus       164 it~qvl~~k~r  174 (198)
T KOG0079|consen  164 ITKQVLQAKLR  174 (198)
T ss_pred             HHHHHHHHHHh
Confidence            99999877654

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.91  E-value=8.6e-24  Score=183.97  Aligned_cols=121  Identities=15%  Similarity=0.248  Sum_probs=92.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+++||++|++.++.+|..||++++++|+|+|+          ++..++.....|+..+.......++|++||+|
T Consensus        46 ~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~----------~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgN  115 (172)
T cd04141          46 DNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSV----------TDRHSFQEASEFKKLITRVRLTEDIPLVLVGN  115 (172)
T ss_pred             CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEEC----------CchhHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            55678899999999999999999999999999999998          45667777666555543322235789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+.+.                     ...+++.++..                +..+.+++|||+++.||+++|++
T Consensus       116 K~Dl~~~~~---------------------v~~~~~~~~a~----------------~~~~~~~e~Sa~~~~~v~~~f~~  158 (172)
T cd04141         116 KVDLESQRQ---------------------VTTEEGRNLAR----------------EFNCPFFETSAALRHYIDDAFHG  158 (172)
T ss_pred             ChhhhhcCc---------------------cCHHHHHHHHH----------------HhCCEEEEEecCCCCCHHHHHHH
Confidence            999865321                     12334443311                12367889999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+.+.
T Consensus       159 l~~~~~~~  166 (172)
T cd04141         159 LVREIRRK  166 (172)
T ss_pred             HHHHHHHh
Confidence            99988764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=4.3e-24  Score=184.75  Aligned_cols=138  Identities=17%  Similarity=0.151  Sum_probs=107.7

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .+|.|+.....++..  +.+.++.+||||+||++||.....||+++.++++|+|+          +....++....|+++
T Consensus        44 ksTIGvef~t~t~~v--d~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDI----------Tr~~Tfenv~rWL~E  111 (222)
T KOG0087|consen   44 KSTIGVEFATRTVNV--DGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI----------TRRQTFENVERWLKE  111 (222)
T ss_pred             ccceeEEEEeeceee--cCcEEEEeeecccchhhhccccchhhcccceeEEEEec----------hhHHHHHHHHHHHHH
Confidence            356777654433222  78899999999999999999999999999999999999          567778888888888


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +..+ ..++++|+|+|||+||-.-|.                     ...+++..|-                ....+++
T Consensus       112 LRdh-ad~nivimLvGNK~DL~~lra---------------------V~te~~k~~A----------------e~~~l~f  153 (222)
T KOG0087|consen  112 LRDH-ADSNIVIMLVGNKSDLNHLRA---------------------VPTEDGKAFA----------------EKEGLFF  153 (222)
T ss_pred             HHhc-CCCCeEEEEeecchhhhhccc---------------------cchhhhHhHH----------------HhcCceE
Confidence            8665 446899999999999965332                     2234444431                1234789


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHHhhhh
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRRRHLF  353 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~~~~~  353 (358)
                      ++|||++..|++.+|..+...|.+..-+
T Consensus       154 ~EtSAl~~tNVe~aF~~~l~~I~~~vs~  181 (222)
T KOG0087|consen  154 LETSALDATNVEKAFERVLTEIYKIVSK  181 (222)
T ss_pred             EEecccccccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999876544

>cd01875 RhoG RhoG subfamily

Probab=99.91  E-value=1.9e-23  Score=184.95  Aligned_cols=132  Identities=15%  Similarity=0.149  Sum_probs=92.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+++|||+||++++.+|..||++++++|+|||+          ++..++++... |...+...  .+++|++||+
T Consensus        47 ~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydi----------t~~~Sf~~~~~~w~~~i~~~--~~~~piilvg  114 (191)
T cd01875          47 DGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSI----------ASPSSYENVRHKWHPEVCHH--CPNVPILLVG  114 (191)
T ss_pred             CCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEE
Confidence            56678999999999999999999999999999999998          45677777754 55555432  3579999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||.||.+.+-....+.      +.   .......+++.+|.. +              ...+.+++|||++++||+++|.
T Consensus       115 NK~DL~~~~~~~~~~~------~~---~~~~v~~~~~~~~a~-~--------------~~~~~~~e~SAk~g~~v~e~f~  170 (191)
T cd01875         115 TKKDLRNDADTLKKLK------EQ---GQAPITPQQGGALAK-Q--------------IHAVKYLECSALNQDGVKEVFA  170 (191)
T ss_pred             eChhhhcChhhHHHHh------hc---cCCCCCHHHHHHHHH-H--------------cCCcEEEEeCCCCCCCHHHHHH
Confidence            9999965421000000      00   000123344444411 0              1125688999999999999999


Q ss_pred             HHHHHHHHh
Q 018283          342 LVDETLRRR  350 (358)
Q Consensus       342 ~i~~~i~~~  350 (358)
                      ++++.++..
T Consensus       171 ~l~~~~~~~  179 (191)
T cd01875         171 EAVRAVLNP  179 (191)
T ss_pred             HHHHHHhcc
Confidence            999988764

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.91  E-value=7.4e-24  Score=186.16  Aligned_cols=130  Identities=15%  Similarity=0.119  Sum_probs=91.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+|||+||+.++.++..||++++++|+|+|+          ++..++.+. ..|+..+...  .+++|++|||
T Consensus        49 ~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDi----------t~~~Sf~~~~~~w~~~i~~~--~~~~piilVg  116 (182)
T cd04172          49 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDI----------SRPETLDSVLKKWKGEIQEF--CPNTKMLLVG  116 (182)
T ss_pred             CCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHH--CCCCCEEEEe
Confidence            56778999999999999999999999999999999998          456777776 4565555443  2478999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCce-EEEEEeeccChhh-HHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRV-FKIYRTTALDPKL-VKKT  339 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~-~~~~~tSA~d~~n-i~~v  339 (358)
                      ||+||.+..-....+..     ..    ..+...+++.++-.                ... +.+++|||++++| |+++
T Consensus       117 NK~DL~~~~~~~~~~~~-----~~----~~~v~~~~~~~~a~----------------~~~~~~~~E~SAk~~~n~v~~~  171 (182)
T cd04172         117 CKSDLRTDLTTLVELSN-----HR----QTPVSYDQGANMAK----------------QIGAATYIECSALQSENSVRDI  171 (182)
T ss_pred             EChhhhcChhhHHHHHh-----cC----CCCCCHHHHHHHHH----------------HcCCCEEEECCcCCCCCCHHHH
Confidence            99998542110000000     00    01134455665521                122 3688999999999 9999


Q ss_pred             HHHHHHHHHH
Q 018283          340 FKLVDETLRR  349 (358)
Q Consensus       340 f~~i~~~i~~  349 (358)
                      |..+...+++
T Consensus       172 F~~~~~~~~~  181 (182)
T cd04172         172 FHVATLACVN  181 (182)
T ss_pred             HHHHHHHHhc
Confidence            9999886654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04133 Rop_like Rop subfamily

Probab=99.90  E-value=2.7e-23  Score=181.62  Aligned_cols=127  Identities=13%  Similarity=0.109  Sum_probs=93.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+|||+|++.++.++..||++++++|+|+|+          ++.++++.. ..|+..+.+..  +++|++|||
T Consensus        45 ~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~----------~~~~Sf~~~~~~w~~~i~~~~--~~~piilvg  112 (176)
T cd04133          45 DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL----------ISRASYENVLKKWVPELRHYA--PNVPIVLVG  112 (176)
T ss_pred             CCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEc----------CCHHHHHHHHHHHHHHHHHhC--CCCCEEEEE
Confidence            55679999999999999999999999999999999998          567788776 35777665432  479999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE-EEEEeeccChhhHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKLVKKTF  340 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~d~~ni~~vf  340 (358)
                      ||+||.+++...  ..      +.  . .-....+++.+|...                ..+ .+++|||+++.||+++|
T Consensus       113 nK~Dl~~~~~~~--~~------~~--~-~~~v~~~~~~~~a~~----------------~~~~~~~E~SAk~~~nV~~~F  165 (176)
T cd04133         113 TKLDLRDDKQYL--AD------HP--G-ASPITTAQGEELRKQ----------------IGAAAYIECSSKTQQNVKAVF  165 (176)
T ss_pred             eChhhccChhhh--hh------cc--C-CCCCCHHHHHHHHHH----------------cCCCEEEECCCCcccCHHHHH
Confidence            999996543210  00      00  0 001344555554211                123 47899999999999999


Q ss_pred             HHHHHHHH
Q 018283          341 KLVDETLR  348 (358)
Q Consensus       341 ~~i~~~i~  348 (358)
                      +.+.+.++
T Consensus       166 ~~~~~~~~  173 (176)
T cd04133         166 DAAIKVVL  173 (176)
T ss_pred             HHHHHHHh
Confidence            99998764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.90  E-value=1.7e-23  Score=190.29  Aligned_cols=134  Identities=13%  Similarity=0.104  Sum_probs=94.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.||||+||+.|+.++..||++++++|+|+|+          ++.+++... ..|+..+...  .++.|++||+
T Consensus        57 ~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDi----------t~~~Sf~~~~~~w~~~i~~~--~~~~piilVg  124 (232)
T cd04174          57 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDI----------SRPETVDSALKKWKAEIMDY--CPSTRILLIG  124 (232)
T ss_pred             CCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEEC----------CChHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence            56778999999999999999999999999999999998          456777764 4555555432  2468999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE-EEEEeeccChh-hHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPK-LVKKT  339 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~d~~-ni~~v  339 (358)
                      ||+||.++.-....+..     ..    ......+++.+|...                ..+ .+++|||++++ ||+++
T Consensus       125 NK~DL~~~~~~~~~l~~-----~~----~~~Vs~~e~~~~a~~----------------~~~~~~~EtSAktg~~~V~e~  179 (232)
T cd04174         125 CKTDLRTDLSTLMELSN-----QK----QAPISYEQGCALAKQ----------------LGAEVYLECSAFTSEKSIHSI  179 (232)
T ss_pred             ECcccccccchhhhhcc-----cc----CCcCCHHHHHHHHHH----------------cCCCEEEEccCCcCCcCHHHH
Confidence            99998542100000000     00    011345566665221                124 47899999998 89999


Q ss_pred             HHHHHHHHHHhhhh
Q 018283          340 FKLVDETLRRRHLF  353 (358)
Q Consensus       340 f~~i~~~i~~~~~~  353 (358)
                      |..++..+++..+.
T Consensus       180 F~~~~~~~~~~~~~  193 (232)
T cd04174         180 FRSASLLCLNKLSP  193 (232)
T ss_pred             HHHHHHHHHHhccc
Confidence            99999998876444

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.90  E-value=5.5e-23  Score=183.29  Aligned_cols=121  Identities=14%  Similarity=0.184  Sum_probs=91.3

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHc---CCCCCCCcEEEE
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK---QPCFEKTSFMLF  260 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~---~~~~~~~~iilv  260 (358)
                      ...+.+.+|||+|++.++.+|..||++++++|+|+|+          ++.+++.+...|+..+..   .+...++|++||
T Consensus        47 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~----------t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv  116 (201)
T cd04107          47 NTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDV----------TRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLL  116 (201)
T ss_pred             CCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEE
Confidence            5678999999999999999999999999999999998          456777777666655532   222357899999


Q ss_pred             eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283          261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF  340 (358)
Q Consensus       261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf  340 (358)
                      +||+|+...+.                     ...+++.++...               .....+++|||++++||+++|
T Consensus       117 ~NK~Dl~~~~~---------------------~~~~~~~~~~~~---------------~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107         117 ANKCDLKKRLA---------------------KDGEQMDQFCKE---------------NGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCcccccc---------------------cCHHHHHHHHHH---------------cCCceEEEEeCCCCCCHHHHH
Confidence            99999964211                     223333333211               111467899999999999999


Q ss_pred             HHHHHHHHHh
Q 018283          341 KLVDETLRRR  350 (358)
Q Consensus       341 ~~i~~~i~~~  350 (358)
                      +++.+.+++.
T Consensus       161 ~~l~~~l~~~  170 (201)
T cd04107         161 RFLVKNILAN  170 (201)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=99.90  E-value=5.9e-23  Score=177.09  Aligned_cols=119  Identities=14%  Similarity=0.168  Sum_probs=91.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..||++++++|+|+|++          +..++.....|+..+... ..++.|++|++|
T Consensus        47 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~n  115 (166)
T cd04122          47 NGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT----------RRSTYNHLSSWLTDARNL-TNPNTVIFLIGN  115 (166)
T ss_pred             CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh-CCCCCeEEEEEE
Confidence            556789999999999999999999999999999999984          556777777777766443 234689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+++.                     ...+++.++..                ...+.++++||++++||.++|..
T Consensus       116 K~Dl~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~e~Sa~~~~~i~e~f~~  158 (166)
T cd04122         116 KADLEAQRD---------------------VTYEEAKQFAD----------------ENGLLFLECSAKTGENVEDAFLE  158 (166)
T ss_pred             CcccccccC---------------------cCHHHHHHHHH----------------HcCCEEEEEECCCCCCHHHHHHH
Confidence            999965431                     12334444321                12356789999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      ++..+.+
T Consensus       159 l~~~~~~  165 (166)
T cd04122         159 TAKKIYQ  165 (166)
T ss_pred             HHHHHhh
Confidence            9988764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04126 Rab20 Rab20 subfamily

Probab=99.90  E-value=2e-22  Score=182.03  Aligned_cols=151  Identities=16%  Similarity=0.108  Sum_probs=100.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++|++.++.+|..||++++++|+|+|+          ++..++.+...||..+... ...++|++||+|
T Consensus        40 ~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv----------t~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgN  108 (220)
T cd04126          40 QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDV----------SNVQSLEELEDRFLGLTDT-ANEDCLFAVVGN  108 (220)
T ss_pred             EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEE
Confidence            34567899999999999999999999999999999998          4567788877888777653 335789999999


Q ss_pred             CCCchhhhhcc----CCCcccccccccccCCCCcccHHHHHHHHHHHH-HHHhhhcCCCCCCCceEEEEEeeccChhhHH
Q 018283          263 KFDIFEKKVLK----VPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKF-EELYFQSTAPDRVDRVFKIYRTTALDPKLVK  337 (358)
Q Consensus       263 K~Dl~~eki~~----~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f-~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~  337 (358)
                      |+||.+.....    .+-..   ..+.   ..-....+++.+|..+.- ...+..+-+   ....+.+++|||++|.||+
T Consensus       109 K~DL~~~~~~~~~~~~~~~~---~~~~---~~r~v~~~e~~~~a~~~~~~~~~~~~~~---~~~~~~~~E~SA~tg~~V~  179 (220)
T cd04126         109 KLDLTEEGALAGQEKDAGDR---VSPE---DQRQVTLEDAKAFYKRINKYKMLDEDLS---PAAEKMCFETSAKTGYNVD  179 (220)
T ss_pred             Cccccccccccccccccccc---cccc---ccccCCHHHHHHHHHHhCcccccccccc---ccccceEEEeeCCCCCCHH
Confidence            99997521100    00000   0000   001144566766633310 000000000   1123568899999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 018283          338 KTFKLVDETLRRRHLF  353 (358)
Q Consensus       338 ~vf~~i~~~i~~~~~~  353 (358)
                      ++|..+.+.++...+.
T Consensus       180 elf~~i~~~~~~~~~~  195 (220)
T cd04126         180 ELFEYLFNLVLPLILA  195 (220)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998865443

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.90  E-value=1.3e-23  Score=170.21  Aligned_cols=121  Identities=20%  Similarity=0.329  Sum_probs=101.4

Q ss_pred             eccCceeeEeeccCCCCcc-cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKK-SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD  244 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~-~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~  244 (358)
                      .||.|++...+      .. +.+.+++||+|||+..|..|.+||.++|++|||+|.          ++..++++.-+.+-
T Consensus        46 tpT~GFn~k~v------~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS----------~D~krfeE~~~el~  109 (185)
T KOG0074|consen   46 TPTNGFNTKKV------EYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDS----------TDEKRFEEISEELV  109 (185)
T ss_pred             cccCCcceEEE------eecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeC----------CchHhHHHHHHHHH
Confidence            58899988777      44 449999999999999999999999999999999994          67888988888888


Q ss_pred             HHHcCCCCCCCcEEEEeeCCCchhh--------hhccCCCcccccccccccCCCCcccHHHHHHHHH
Q 018283          245 WVLKQPCFEKTSFMLFLNKFDIFEK--------KVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVK  303 (358)
Q Consensus       245 ~i~~~~~~~~~~iilv~NK~Dl~~e--------ki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~  303 (358)
                      +++....+..+|++++.||+|+..+        |+.-..++++.|..+.+++.++ .+...+.+|+.
T Consensus       110 ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~-eg~~dg~~wv~  175 (185)
T KOG0074|consen  110 ELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSL-EGSTDGSDWVQ  175 (185)
T ss_pred             HHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccc-cCccCcchhhh
Confidence            8888777888999999999999753        3333467788999999988887 66777777754

>cd04154 Arl2 Arl2 subfamily

Probab=99.90  E-value=1.1e-22  Score=176.70  Aligned_cols=129  Identities=20%  Similarity=0.299  Sum_probs=94.4

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  246 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i  246 (358)
                      +|.|+....+      ..+.+.+.+||++|++.++..|..||++++++|||+|.+          +..++.+...++..+
T Consensus        44 ~t~g~~~~~~------~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~  107 (173)
T cd04154          44 PTLGFQIKTL------EYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSS----------DRLRLDDCKRELKEL  107 (173)
T ss_pred             CccccceEEE------EECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECC----------CHHHHHHHHHHHHHH
Confidence            4555444344      344688999999999999999999999999999999973          456777777888888


Q ss_pred             HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283          247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY  326 (358)
Q Consensus       247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~  326 (358)
                      +......++|+++++||+|+.+..                       ..++..+++.     ..   ..   ..+.+.++
T Consensus       108 ~~~~~~~~~p~iiv~nK~Dl~~~~-----------------------~~~~~~~~~~-----~~---~~---~~~~~~~~  153 (173)
T cd04154         108 LQEERLAGATLLILANKQDLPGAL-----------------------SEEEIREALE-----LD---KI---SSHHWRIQ  153 (173)
T ss_pred             HhChhhcCCCEEEEEECcccccCC-----------------------CHHHHHHHhC-----cc---cc---CCCceEEE
Confidence            765555689999999999986421                       1122222211     00   00   12457889


Q ss_pred             EeeccChhhHHHHHHHHHH
Q 018283          327 RTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       327 ~tSA~d~~ni~~vf~~i~~  345 (358)
                      ++||++++||.++|+++.+
T Consensus       154 ~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         154 PCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             eccCCCCcCHHHHHHHHhc
Confidence            9999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04131 Rnd Rnd subfamily

Probab=99.89  E-value=3.4e-23  Score=181.34  Aligned_cols=129  Identities=14%  Similarity=0.125  Sum_probs=89.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+++|||+||+.++.++..||++++++|+|+|+          ++.+++... ..|+..+...  .+++|++|||
T Consensus        45 ~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdi----------t~~~Sf~~~~~~w~~~i~~~--~~~~~iilVg  112 (178)
T cd04131          45 DEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDI----------SRPETLDSVLKKWRGEIQEF--CPNTKVLLVG  112 (178)
T ss_pred             CCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEEC----------CChhhHHHHHHHHHHHHHHH--CCCCCEEEEE
Confidence            56778999999999999999999999999999999998          456777775 4565555433  2478999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE-EEEEeeccChhh-HHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKL-VKKT  339 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~d~~n-i~~v  339 (358)
                      ||+||.++.-....+.      +..   .-+...+++.+|-.+                ..+ .+++|||++++| |+++
T Consensus       113 nK~DL~~~~~~~~~~~------~~~---~~~v~~~e~~~~a~~----------------~~~~~~~E~SA~~~~~~v~~~  167 (178)
T cd04131         113 CKTDLRTDLSTLMELS------HQR---QAPVSYEQGCAIAKQ----------------LGAEIYLECSAFTSEKSVRDI  167 (178)
T ss_pred             EChhhhcChhHHHHHH------hcC---CCCCCHHHHHHHHHH----------------hCCCEEEECccCcCCcCHHHH
Confidence            9999964210000000      000   001334556555211                123 578999999996 9999


Q ss_pred             HHHHHHHHH
Q 018283          340 FKLVDETLR  348 (358)
Q Consensus       340 f~~i~~~i~  348 (358)
                      |..+....+
T Consensus       168 F~~~~~~~~  176 (178)
T cd04131         168 FHVATMACL  176 (178)
T ss_pred             HHHHHHHHh
Confidence            999988654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=3.2e-23  Score=169.39  Aligned_cols=131  Identities=19%  Similarity=0.188  Sum_probs=100.2

Q ss_pred             eccCceee----EeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH
Q 018283          166 VRTTGVVE----IQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE  241 (358)
Q Consensus       166 ~~T~gi~e----~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~  241 (358)
                      +.|.|+..    +.+      ++..++++||||+||++||+....||+.++++|+|+|+|.       .++...+-+|+.
T Consensus        37 gatigvdfmiktvev------~gekiklqiwdtagqerfrsitqsyyrsahalilvydisc-------qpsfdclpewlr  103 (213)
T KOG0095|consen   37 GATIGVDFMIKTVEV------NGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC-------QPSFDCLPEWLR  103 (213)
T ss_pred             CceeeeeEEEEEEEE------CCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEeccc-------CcchhhhHHHHH
Confidence            45666544    445      7889999999999999999999999999999999999974       355677778887


Q ss_pred             HHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCc
Q 018283          242 LFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDR  321 (358)
Q Consensus       242 ~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~  321 (358)
                      ..++..++    ++--+||+||.|+-+++...                          .-|.+.|.+           ..
T Consensus       104 eie~yan~----kvlkilvgnk~d~~drrevp--------------------------~qigeefs~-----------~q  142 (213)
T KOG0095|consen  104 EIEQYANN----KVLKILVGNKIDLADRREVP--------------------------QQIGEEFSE-----------AQ  142 (213)
T ss_pred             HHHHHhhc----ceEEEeeccccchhhhhhhh--------------------------HHHHHHHHH-----------hh
Confidence            77777665    45569999999997765321                          111222222           12


Q ss_pred             eEEEEEeeccChhhHHHHHHHHHHHHHHh
Q 018283          322 VFKIYRTTALDPKLVKKTFKLVDETLRRR  350 (358)
Q Consensus       322 ~~~~~~tSA~d~~ni~~vf~~i~~~i~~~  350 (358)
                      .+|+.+|||++.+||+.+|..++-.++..
T Consensus       143 dmyfletsakea~nve~lf~~~a~rli~~  171 (213)
T KOG0095|consen  143 DMYFLETSAKEADNVEKLFLDLACRLISE  171 (213)
T ss_pred             hhhhhhhcccchhhHHHHHHHHHHHHHHH
Confidence            36778899999999999999999888764

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.1e-22  Score=165.97  Aligned_cols=137  Identities=17%  Similarity=0.249  Sum_probs=98.3

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      ..|+||..-.-+.-  ...+.+++++|||+||+++|.+...||+++.++|+++|++          +.+++.....|...
T Consensus        51 vsTvGidFKvKTvy--r~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDit----------NeeSf~svqdw~tq  118 (193)
T KOG0093|consen   51 VSTVGIDFKVKTVY--RSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT----------NEESFNSVQDWITQ  118 (193)
T ss_pred             eeeeeeeEEEeEee--ecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecC----------CHHHHHHHHHHHHH
Confidence            56777764221111  1457799999999999999999999999999999999984          44444444444434


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      + ..-.-.+.|++|++||||+..||...                     .+.+..++.+                -.+.+
T Consensus       119 I-ktysw~naqvilvgnKCDmd~eRvis---------------------~e~g~~l~~~----------------LGfef  160 (193)
T KOG0093|consen  119 I-KTYSWDNAQVILVGNKCDMDSERVIS---------------------HERGRQLADQ----------------LGFEF  160 (193)
T ss_pred             h-eeeeccCceEEEEecccCCccceeee---------------------HHHHHHHHHH----------------hChHH
Confidence            3 32233589999999999999887632                     2333333221                23567


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHHhhh
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRRRHL  352 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~~~~  352 (358)
                      ++||||.+.||+.+|+.+++.|-++--
T Consensus       161 FEtSaK~NinVk~~Fe~lv~~Ic~kms  187 (193)
T KOG0093|consen  161 FETSAKENINVKQVFERLVDIICDKMS  187 (193)
T ss_pred             hhhcccccccHHHHHHHHHHHHHHHhh
Confidence            899999999999999999999865533

>cd04127 Rab27A Rab27a subfamily

Probab=99.89  E-value=1.9e-22  Score=175.98  Aligned_cols=119  Identities=15%  Similarity=0.206  Sum_probs=91.8

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ...+.+.+||++||+.++..|..|+++++++|+|+|++          +..++.+...|+..+......++.|+++|+||
T Consensus        60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK  129 (180)
T cd04127          60 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLT----------NEQSFLNVRNWMSQLQTHAYCENPDIVLCGNK  129 (180)
T ss_pred             CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Confidence            45688999999999999999999999999999999983          56777777777777755444457899999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      +|+.+++.                     ...+++..+.. .               ..+.++++||+++.|++++|+.+
T Consensus       130 ~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~e~Sak~~~~v~~l~~~l  172 (180)
T cd04127         130 ADLEDQRQ---------------------VSEEQAKALAD-K---------------YGIPYFETSAATGTNVEKAVERL  172 (180)
T ss_pred             ccchhcCc---------------------cCHHHHHHHHH-H---------------cCCeEEEEeCCCCCCHHHHHHHH
Confidence            99965421                     12233333311 1               12457899999999999999999


Q ss_pred             HHHHHH
Q 018283          344 DETLRR  349 (358)
Q Consensus       344 ~~~i~~  349 (358)
                      .+.+++
T Consensus       173 ~~~~~~  178 (180)
T cd04127         173 LDLVMK  178 (180)
T ss_pred             HHHHHh
Confidence            988865

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04136 Rap_like Rap-like subfamily

Probab=99.89  E-value=1.5e-22  Score=173.28  Aligned_cols=118  Identities=14%  Similarity=0.192  Sum_probs=89.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+++|||+|+++++.+|..|+++++++|+|+|++          +..++.+...|++.+.......++|+++++|
T Consensus        45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  114 (163)
T cd04136          45 DGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSIT----------SQSSFNDLQDLREQILRVKDTENVPMVLVGN  114 (163)
T ss_pred             CCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            556688999999999999999999999999999999984          4566777777777776543345789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..+. +.               ..+.++++||+++.||.++|++
T Consensus       115 K~Dl~~~~~---------------------~~~~~~~~~~-~~---------------~~~~~~~~Sa~~~~~v~~l~~~  157 (163)
T cd04136         115 KCDLEDERV---------------------VSREEGQALA-RQ---------------WGCPFYETSAKSKINVDEVFAD  157 (163)
T ss_pred             Cccccccce---------------------ecHHHHHHHH-HH---------------cCCeEEEecCCCCCCHHHHHHH
Confidence            999864321                     1122222221 11               1155789999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      +.+.+
T Consensus       158 l~~~~  162 (163)
T cd04136         158 LVRQI  162 (163)
T ss_pred             HHHhc
Confidence            98765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.89  E-value=2.8e-22  Score=173.52  Aligned_cols=133  Identities=19%  Similarity=0.335  Sum_probs=98.1

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|.....+      ..+++.+++||++|++.++.+|..||++++++|||+|.+          +..++.++..++..
T Consensus        28 ~~t~g~~~~~~------~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s----------~~~s~~~~~~~l~~   91 (167)
T cd04161          28 APTVGFTPTKL------RLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS----------DDDRVQEVKEILRE   91 (167)
T ss_pred             cCcccceEEEE------EECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC----------chhHHHHHHHHHHH
Confidence            35666655555      556789999999999999999999999999999999974          45688888999999


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +.+.+...++|++||+||+|+.+.+-                       ..+..+.+.-  ..+     ++ .....+++
T Consensus        92 l~~~~~~~~~piliv~NK~Dl~~~~~-----------------------~~~i~~~~~l--~~~-----~~-~~~~~~~~  140 (167)
T cd04161          92 LLQHPRVSGKPILVLANKQDKKNALL-----------------------GADVIEYLSL--EKL-----VN-ENKSLCHI  140 (167)
T ss_pred             HHcCccccCCcEEEEEeCCCCcCCCC-----------------------HHHHHHhcCc--ccc-----cC-CCCceEEE
Confidence            88776667899999999999965421                       1111111000  000     00 01235778


Q ss_pred             EEeeccCh------hhHHHHHHHHHH
Q 018283          326 YRTTALDP------KLVKKTFKLVDE  345 (358)
Q Consensus       326 ~~tSA~d~------~ni~~vf~~i~~  345 (358)
                      ..+||++|      +|+.+.|+|+..
T Consensus       141 ~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         141 EPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             EEeEceeCCCCccccCHHHHHHHHhc
Confidence            88999998      899999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.89  E-value=6.3e-23  Score=167.33  Aligned_cols=132  Identities=17%  Similarity=0.297  Sum_probs=110.4

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|++..++      +.+.+++.+||+|||++||.+|..|++++++++||+|.          ++.+.+..+...+.+
T Consensus        50 iptvGfnmrk~------tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDa----------ad~~k~~~sr~EL~~  113 (186)
T KOG0075|consen   50 IPTVGFNMRKV------TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDA----------ADPDKLEASRSELHD  113 (186)
T ss_pred             cccccceeEEe------ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeec----------CCcccchhhHHHHHH
Confidence            58999999999      88999999999999999999999999999999999997          457888889999999


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      ++..+.+.++|++++|||.|+.++-                    +   .   .+.|...-        -....+|.+.+
T Consensus       114 LL~k~~l~gip~LVLGnK~d~~~AL--------------------~---~---~~li~rmg--------L~sitdREvcC  159 (186)
T KOG0075|consen  114 LLDKPSLTGIPLLVLGNKIDLPGAL--------------------S---K---IALIERMG--------LSSITDREVCC  159 (186)
T ss_pred             HhcchhhcCCcEEEecccccCcccc--------------------c---H---HHHHHHhC--------ccccccceEEE
Confidence            9999999999999999999987641                    0   0   11111111        11225789999


Q ss_pred             EEeeccChhhHHHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                      |.+||++..||+.+.+|+.+.-
T Consensus       160 ~siScke~~Nid~~~~Wli~hs  181 (186)
T KOG0075|consen  160 FSISCKEKVNIDITLDWLIEHS  181 (186)
T ss_pred             EEEEEcCCccHHHHHHHHHHHh
Confidence            9999999999999999998764

>cd04175 Rap1 Rap1 subgroup

Probab=99.89  E-value=2.5e-22  Score=172.64  Aligned_cols=118  Identities=14%  Similarity=0.159  Sum_probs=90.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+|||+|++.++.+|..|+++++++|+|+|+          ++..++.+..+|+..+.+.....+.|++|++|
T Consensus        45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  114 (164)
T cd04175          45 DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSI----------TAQSTFNDLQDLREQILRVKDTEDVPMILVGN  114 (164)
T ss_pred             CCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            55678899999999999999999999999999999998          35567777777888776654456899999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..+ .++               ..+.++++||+++.|++++|.+
T Consensus       115 K~Dl~~~~~---------------------~~~~~~~~~-~~~---------------~~~~~~~~Sa~~~~~v~~~~~~  157 (164)
T cd04175         115 KCDLEDERV---------------------VGKEQGQNL-ARQ---------------WGCAFLETSAKAKINVNEIFYD  157 (164)
T ss_pred             CCcchhccE---------------------EcHHHHHHH-HHH---------------hCCEEEEeeCCCCCCHHHHHHH
Confidence            999965321                     112222222 111               1256789999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      +.+.+
T Consensus       158 l~~~l  162 (164)
T cd04175         158 LVRQI  162 (164)
T ss_pred             HHHHh
Confidence            98765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.89  E-value=1.4e-22  Score=176.94  Aligned_cols=128  Identities=17%  Similarity=0.198  Sum_probs=89.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+||++|++.++.+|..||++++++|+|+|+          ++..++.+... |+..+...  .+++|++|++
T Consensus        45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~----------~~~~s~~~~~~~w~~~i~~~--~~~~piilvg  112 (175)
T cd01874          45 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV----------VSPSSFENVKEKWVPEITHH--CPKTPFLLVG  112 (175)
T ss_pred             CCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence            45568999999999999999999999999999999998          45667777654 55555432  2478999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+.++......+..      +.   ......+++.++.. ++              +.+.++++||++++||+++|+
T Consensus       113 nK~Dl~~~~~~~~~l~~------~~---~~~v~~~~~~~~a~-~~--------------~~~~~~e~SA~tg~~v~~~f~  168 (175)
T cd01874         113 TQIDLRDDPSTIEKLAK------NK---QKPITPETGEKLAR-DL--------------KAVKYVECSALTQKGLKNVFD  168 (175)
T ss_pred             ECHhhhhChhhHHHhhh------cc---CCCcCHHHHHHHHH-Hh--------------CCcEEEEecCCCCCCHHHHHH
Confidence            99998654221111110      00   00133455554421 11              225688999999999999999


Q ss_pred             HHHHH
Q 018283          342 LVDET  346 (358)
Q Consensus       342 ~i~~~  346 (358)
                      .+.+.
T Consensus       169 ~~~~~  173 (175)
T cd01874         169 EAILA  173 (175)
T ss_pred             HHHHH
Confidence            88764

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.89  E-value=4.4e-22  Score=171.82  Aligned_cols=128  Identities=20%  Similarity=0.374  Sum_probs=93.5

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|.....+      +.+.+.+.+||++|++.++.+|..||++++++|||+|.+          +..++..+..++..
T Consensus        29 ~pt~g~~~~~i------~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t----------~~~s~~~~~~~l~~   92 (164)
T cd04162          29 VPTTGFNSVAI------PTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA----------DSERLPLARQELHQ   92 (164)
T ss_pred             cccCCcceEEE------eeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence            36666655555      667899999999999999999999999999999999974          45577778888888


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +....  +++|+++|+||+|+..++.                       ..+..+.+.  ...+     +   .++.+.+
T Consensus        93 ~~~~~--~~~piilv~NK~Dl~~~~~-----------------------~~~i~~~~~--~~~~-----~---~~~~~~~  137 (164)
T cd04162          93 LLQHP--PDLPLVVLANKQDLPAARS-----------------------VQEIHKELE--LEPI-----A---RGRRWIL  137 (164)
T ss_pred             HHhCC--CCCcEEEEEeCcCCcCCCC-----------------------HHHHHHHhC--Chhh-----c---CCCceEE
Confidence            76543  5799999999999865431                       111111000  0000     1   1345777


Q ss_pred             EEeeccC------hhhHHHHHHHHH
Q 018283          326 YRTTALD------PKLVKKTFKLVD  344 (358)
Q Consensus       326 ~~tSA~d------~~ni~~vf~~i~  344 (358)
                      ++|||++      +++|+++|+.+.
T Consensus       138 ~~~Sa~~~~s~~~~~~v~~~~~~~~  162 (164)
T cd04162         138 QGTSLDDDGSPSRMEAVKDLLSQLI  162 (164)
T ss_pred             EEeeecCCCChhHHHHHHHHHHHHh
Confidence            8888888      999999999765

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.89  E-value=4e-22  Score=171.59  Aligned_cols=132  Identities=22%  Similarity=0.365  Sum_probs=97.3

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .+|.++....+      ...+..+.+|||+|++.++..|..+|++++++|||+|.+          +.+++.....++..
T Consensus        35 ~~t~~~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~----------~~~~~~~~~~~~~~   98 (167)
T cd04160          35 TPTVGLNIGTI------EVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDST----------DRERFEESKSALEK   98 (167)
T ss_pred             CCccccceEEE------EECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECc----------hHHHHHHHHHHHHH
Confidence            35556555455      455789999999999999999999999999999999974          34567777888888


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +.+.....++|++|++||+|+..+                       ....+..+++.......         ....+.+
T Consensus        99 ~~~~~~~~~~p~ilv~NK~D~~~~-----------------------~~~~~~~~~~~~~~~~~---------~~~~~~~  146 (167)
T cd04160          99 VLRNEALEGVPLLILANKQDLPDA-----------------------LSVEEIKEVFQDKAEEI---------GRRDCLV  146 (167)
T ss_pred             HHhChhhcCCCEEEEEEccccccC-----------------------CCHHHHHHHhccccccc---------cCCceEE
Confidence            877665678999999999998542                       11222233222111111         1234678


Q ss_pred             EEeeccChhhHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~  345 (358)
                      +.+||++++|++++|+++++
T Consensus       147 ~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         147 LPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             EEeeCCCCcCHHHHHHHHhc
Confidence            89999999999999999875

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.88  E-value=1.7e-22  Score=182.71  Aligned_cols=117  Identities=14%  Similarity=0.153  Sum_probs=89.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+|||+|++.++.+|..||++++++|+|||++          +..++.....|+..+...  ..+.|++||||
T Consensus        58 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~----------~~~s~~~i~~w~~~i~~~--~~~~piilvgN  125 (219)
T PLN03071         58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGN  125 (219)
T ss_pred             CCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCC----------CHHHHHHHHHHHHHHHHh--CCCCcEEEEEE
Confidence            345689999999999999999999999999999999984          556777777777776543  35789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.....                      ..++. .+     ..           .+.+.+++|||+++.||.++|.+
T Consensus       126 K~Dl~~~~v----------------------~~~~~-~~-----~~-----------~~~~~~~e~SAk~~~~i~~~f~~  166 (219)
T PLN03071        126 KVDVKNRQV----------------------KAKQV-TF-----HR-----------KKNLQYYEISAKSNYNFEKPFLY  166 (219)
T ss_pred             chhhhhccC----------------------CHHHH-HH-----HH-----------hcCCEEEEcCCCCCCCHHHHHHH
Confidence            999853211                      11111 22     11           12366789999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+++.
T Consensus       167 l~~~~~~~  174 (219)
T PLN03071        167 LARKLAGD  174 (219)
T ss_pred             HHHHHHcC
Confidence            99988753

>cd00879 Sar1 Sar1 subfamily

Probab=99.88  E-value=5.6e-22  Score=174.72  Aligned_cols=130  Identities=18%  Similarity=0.312  Sum_probs=91.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ...++.+.+||++|++.++..|..|+++++++|+|+|++          +.+++.+...++..+++.....+.|+++++|
T Consensus        59 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~----------~~~s~~~~~~~~~~i~~~~~~~~~pvivv~N  128 (190)
T cd00879          59 TIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAA----------DPERFQESKEELDSLLSDEELANVPFLILGN  128 (190)
T ss_pred             EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECC----------cHHHHHHHHHHHHHHHcCccccCCCEEEEEe
Confidence            445688999999999999999999999999999999984          4567777888888888765566799999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhh-cCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQ-STAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~-~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      |+|+.++                       ...++..+++.. +...... -..+....+.+.++.|||++++|+.++|+
T Consensus       129 K~Dl~~~-----------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~  184 (190)
T cd00879         129 KIDLPGA-----------------------VSEEELRQALGL-YGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFR  184 (190)
T ss_pred             CCCCCCC-----------------------cCHHHHHHHhCc-ccccccccccccccCceeEEEEEeEecCCCChHHHHH
Confidence            9998532                       111222222110 0000000 00000012457789999999999999999


Q ss_pred             HHHHH
Q 018283          342 LVDET  346 (358)
Q Consensus       342 ~i~~~  346 (358)
                      ++...
T Consensus       185 ~l~~~  189 (190)
T cd00879         185 WLSQY  189 (190)
T ss_pred             HHHhh
Confidence            99764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.88  E-value=2.2e-22  Score=181.90  Aligned_cols=133  Identities=13%  Similarity=0.112  Sum_probs=93.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.|.+|||+|++.|+.+|..||++++++|+|||++          +..++......|...+.. ..+++|++||+|
T Consensus        45 ~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis----------~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgn  113 (222)
T cd04173          45 DKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDIS----------RPETLDSVLKKWQGETQE-FCPNAKVVLVGC  113 (222)
T ss_pred             CCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh-hCCCCCEEEEEE
Confidence            567789999999999999999999999999999999984          567777776655544332 335799999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh-HHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL-VKKTFK  341 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n-i~~vf~  341 (358)
                      |+||....-....+..     ..    .-+...+++..+-. ++              .-+.+++|||++++| |+++|+
T Consensus       114 K~DL~~~~~~~~~~~~-----~~----~~pIs~e~g~~~ak-~~--------------~~~~y~E~SAk~~~~~V~~~F~  169 (222)
T cd04173         114 KLDMRTDLATLRELSK-----QR----LIPVTHEQGTVLAK-QV--------------GAVSYVECSSRSSERSVRDVFH  169 (222)
T ss_pred             Ccccccchhhhhhhhh-----cc----CCccCHHHHHHHHH-Hc--------------CCCEEEEcCCCcCCcCHHHHHH
Confidence            9999653210000000     00    00133455555411 10              114688999999996 999999


Q ss_pred             HHHHHHHHh
Q 018283          342 LVDETLRRR  350 (358)
Q Consensus       342 ~i~~~i~~~  350 (358)
                      .+....+..
T Consensus       170 ~~~~~~~~~  178 (222)
T cd04173         170 VATVASLGR  178 (222)
T ss_pred             HHHHHHHhc
Confidence            999887764

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04157 Arl6 Arl6 subfamily

Probab=99.88  E-value=5.9e-22  Score=169.41  Aligned_cols=130  Identities=22%  Similarity=0.427  Sum_probs=94.1

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|+....+      ....+.+++|||+|++.++.+|..||++++++|||+|.+          +..++..+..++..
T Consensus        30 ~~t~g~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~----------~~~~~~~~~~~~~~   93 (162)
T cd04157          30 VPTVGFNVESF------EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSS----------DRLRLVVVKDELEL   93 (162)
T ss_pred             cCccccceEEE------EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCC----------cHHHHHHHHHHHHH
Confidence            36666655555      557789999999999999999999999999999999974          45666677777777


Q ss_pred             HHcCCCC--CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE
Q 018283          246 VLKQPCF--EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF  323 (358)
Q Consensus       246 i~~~~~~--~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~  323 (358)
                      +.+.+.+  .++|+++++||+|+.++.                       ...+....+     .+     . ....+.+
T Consensus        94 ~~~~~~~~~~~~p~iiv~NK~Dl~~~~-----------------------~~~~~~~~l-----~~-----~-~~~~~~~  139 (162)
T cd04157          94 LLNHPDIKHRRVPILFFANKMDLPDAL-----------------------TAVKITQLL-----GL-----E-NIKDKPW  139 (162)
T ss_pred             HHcCcccccCCCCEEEEEeCccccCCC-----------------------CHHHHHHHh-----CC-----c-cccCceE
Confidence            7665433  478999999999986431                       011111110     00     0 0012346


Q ss_pred             EEEEeeccChhhHHHHHHHHHH
Q 018283          324 KIYRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       324 ~~~~tSA~d~~ni~~vf~~i~~  345 (358)
                      .++.+||++++|++++|+++.+
T Consensus       140 ~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         140 HIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             EEEEeeCCCCCchHHHHHHHhc
Confidence            7888999999999999999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04151 Arl1 Arl1 subfamily

Probab=99.88  E-value=5e-22  Score=169.86  Aligned_cols=129  Identities=20%  Similarity=0.338  Sum_probs=91.1

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  246 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i  246 (358)
                      ||.|.....+      +...+++++||++|++.++..|..|+++++++|+|+|.+          +..++.....++..+
T Consensus        29 ~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~~~~~~~~~~~~~   92 (158)
T cd04151          29 PTIGFNVETV------TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDST----------DRDRLGTAKEELHAM   92 (158)
T ss_pred             CccCcCeEEE------EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHH
Confidence            4445444444      556789999999999999999999999999999999984          334555556666666


Q ss_pred             HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283          247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY  326 (358)
Q Consensus       247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~  326 (358)
                      ++.....+.|++|++||+|+.++.                       ...+....    + ..   ...   ..+.+.++
T Consensus        93 ~~~~~~~~~piiiv~nK~Dl~~~~-----------------------~~~~i~~~----~-~~---~~~---~~~~~~~~  138 (158)
T cd04151          93 LEEEELKGAVLLVFANKQDMPGAL-----------------------SEAEISEK----L-GL---SEL---KDRTWSIF  138 (158)
T ss_pred             HhchhhcCCcEEEEEeCCCCCCCC-----------------------CHHHHHHH----h-Cc---ccc---CCCcEEEE
Confidence            665555679999999999985421                       11111111    1 00   000   12346788


Q ss_pred             EeeccChhhHHHHHHHHHH
Q 018283          327 RTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       327 ~tSA~d~~ni~~vf~~i~~  345 (358)
                      ++||+++.||+++|+++.+
T Consensus       139 ~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         139 KTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             EeeccCCCCHHHHHHHHhc
Confidence            9999999999999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04176 Rap2 Rap2 subgroup

Probab=99.88  E-value=6.7e-22  Score=169.62  Aligned_cols=118  Identities=14%  Similarity=0.199  Sum_probs=88.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+++||++|+++++.+|..|+++++++|+|+|++          +..++.+...|+..+.......+.|++|++|
T Consensus        45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piviv~n  114 (163)
T cd04176          45 DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLV----------NQQTFQDIKPMRDQIVRVKGYEKVPIILVGN  114 (163)
T ss_pred             CCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            556678999999999999999999999999999999984          5566777777777776544446789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ....++..+ ...               ..+.++++||+++.|+.++|.+
T Consensus       115 K~Dl~~~~~---------------------~~~~~~~~~-~~~---------------~~~~~~~~Sa~~~~~v~~l~~~  157 (163)
T cd04176         115 KVDLESERE---------------------VSSAEGRAL-AEE---------------WGCPFMETSAKSKTMVNELFAE  157 (163)
T ss_pred             CccchhcCc---------------------cCHHHHHHH-HHH---------------hCCEEEEecCCCCCCHHHHHHH
Confidence            999854211                     112223222 111               1245688999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      +++.+
T Consensus       158 l~~~l  162 (163)
T cd04176         158 IVRQM  162 (163)
T ss_pred             HHHhc
Confidence            98653

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01865 Rab3 Rab3 subfamily

Probab=99.88  E-value=7.7e-22  Score=170.03  Aligned_cols=119  Identities=15%  Similarity=0.260  Sum_probs=89.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..++++++++++|+|++          +.+++.+...|+..+... ...++|+++++|
T Consensus        46 ~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~piivv~n  114 (165)
T cd01865          46 NDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT----------NEESFNAVQDWSTQIKTY-SWDNAQVILVGN  114 (165)
T ss_pred             CCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHh-CCCCCCEEEEEE
Confidence            445688999999999999999999999999999999984          456777777777776442 234789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+++.                     ...+++.++. +.               ..+.++++||+++.|+.++|++
T Consensus       115 K~Dl~~~~~---------------------~~~~~~~~~~-~~---------------~~~~~~~~Sa~~~~gv~~l~~~  157 (165)
T cd01865         115 KCDMEDERV---------------------VSSERGRQLA-DQ---------------LGFEFFEASAKENINVKQVFER  157 (165)
T ss_pred             CcccCcccc---------------------cCHHHHHHHH-HH---------------cCCEEEEEECCCCCCHHHHHHH
Confidence            999965421                     1123333321 11               1245789999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.+-+
T Consensus       158 l~~~~~~  164 (165)
T cd01865         158 LVDIICD  164 (165)
T ss_pred             HHHHHHh
Confidence            9887643

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04110 Rab35 Rab35 subfamily

Probab=99.88  E-value=9.6e-22  Score=175.07  Aligned_cols=122  Identities=21%  Similarity=0.281  Sum_probs=93.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      .+..+.+.+||++|++.++.+|..|+++++++|+|+|++          +.+++.+...|+..+...  ....|++||+|
T Consensus        51 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~----------~~~s~~~~~~~~~~i~~~--~~~~piivVgN  118 (199)
T cd04110          51 NGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT----------NGESFVNVKRWLQEIEQN--CDDVCKVLVGN  118 (199)
T ss_pred             CCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence            455678999999999999999999999999999999984          556777777788777553  24689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+...+.                     ...+++..+...                ..+.++++||+++.||.++|++
T Consensus       119 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~e~Sa~~~~gi~~lf~~  161 (199)
T cd04110         119 KNDDPERKV---------------------VETEDAYKFAGQ----------------MGISLFETSAKENINVEEMFNC  161 (199)
T ss_pred             Ccccccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEECCCCcCHHHHHHH
Confidence            999864321                     122333333211                1256789999999999999999


Q ss_pred             HHHHHHHhhhh
Q 018283          343 VDETLRRRHLF  353 (358)
Q Consensus       343 i~~~i~~~~~~  353 (358)
                      +.+.++.....
T Consensus       162 l~~~~~~~~~~  172 (199)
T cd04110         162 ITELVLRAKKD  172 (199)
T ss_pred             HHHHHHHhhhc
Confidence            99999865443

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04128 Spg1 Spg1p

Probab=99.88  E-value=6.1e-22  Score=174.02  Aligned_cols=123  Identities=16%  Similarity=0.216  Sum_probs=87.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.+...|+..+.... ....| +||+|
T Consensus        45 ~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t----------~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgn  112 (182)
T cd04128          45 RGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLT----------RKSTLNSIKEWYRQARGFN-KTAIP-ILVGT  112 (182)
T ss_pred             CCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhC-CCCCE-EEEEE
Confidence            456789999999999999999999999999999999984          5667777777777775532 23466 67899


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..+.-..                ....-.+++.+|     ..           ...+.+++|||+++.||+++|++
T Consensus       113 K~Dl~~~~~~~----------------~~~~~~~~~~~~-----a~-----------~~~~~~~e~SAk~g~~v~~lf~~  160 (182)
T cd04128         113 KYDLFADLPPE----------------EQEEITKQARKY-----AK-----------AMKAPLIFCSTSHSINVQKIFKI  160 (182)
T ss_pred             chhccccccch----------------hhhhhHHHHHHH-----HH-----------HcCCEEEEEeCCCCCCHHHHHHH
Confidence            99996421000                000011222222     11           11255789999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.++.
T Consensus       161 l~~~l~~  167 (182)
T cd04128         161 VLAKAFD  167 (182)
T ss_pred             HHHHHHh
Confidence            9998875

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.88  E-value=1.4e-21  Score=162.24  Aligned_cols=122  Identities=15%  Similarity=0.167  Sum_probs=100.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC-CCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC-FEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~-~~~~~iilv~  261 (358)
                      .+..+++++|||+||++||+....||++.-+++.|+|+          +++.++++...|+++...+-. ..++-+.|||
T Consensus        54 pg~riklqlwdtagqerfrsitksyyrnsvgvllvydi----------tnr~sfehv~~w~~ea~m~~q~P~k~VFlLVG  123 (213)
T KOG0091|consen   54 PGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDI----------TNRESFEHVENWVKEAAMATQGPDKVVFLLVG  123 (213)
T ss_pred             CCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEec----------cchhhHHHHHHHHHHHHHhcCCCCeeEEEEec
Confidence            56789999999999999999999999999999999998          578889888888887654433 3356678999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      .|+||...|.                     ...++|.++-                +...+.+.+|||+++.||+++|+
T Consensus       124 hKsDL~SqRq---------------------Vt~EEaEklA----------------a~hgM~FVETSak~g~NVeEAF~  166 (213)
T KOG0091|consen  124 HKSDLQSQRQ---------------------VTAEEAEKLA----------------ASHGMAFVETSAKNGCNVEEAFD  166 (213)
T ss_pred             cccchhhhcc---------------------ccHHHHHHHH----------------HhcCceEEEecccCCCcHHHHHH
Confidence            9999976543                     4456666541                23568899999999999999999


Q ss_pred             HHHHHHHHhh
Q 018283          342 LVDETLRRRH  351 (358)
Q Consensus       342 ~i~~~i~~~~  351 (358)
                      .+.+.|...-
T Consensus       167 mlaqeIf~~i  176 (213)
T KOG0091|consen  167 MLAQEIFQAI  176 (213)
T ss_pred             HHHHHHHHHH
Confidence            9999997643

>cd04117 Rab15 Rab15 subfamily

Probab=99.88  E-value=8.1e-22  Score=169.45  Aligned_cols=116  Identities=16%  Similarity=0.144  Sum_probs=88.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++|++.++..|..|+++++++++|+|+          ++.+++++...|+..+.+. ...+.|+++++|
T Consensus        45 ~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgn  113 (161)
T cd04117          45 DGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDI----------SSERSYQHIMKWVSDVDEY-APEGVQKILIGN  113 (161)
T ss_pred             CCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEE
Confidence            44568899999999999999999999999999999998          4567788887887776543 234789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+.+++.                     ...+++..+.. .               ..+.+++|||+++.||+++|.+
T Consensus       114 K~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~e~Sa~~~~~v~~~f~~  156 (161)
T cd04117         114 KADEEQKRQ---------------------VGDEQGNKLAK-E---------------YGMDFFETSACTNSNIKESFTR  156 (161)
T ss_pred             CcccccccC---------------------CCHHHHHHHHH-H---------------cCCEEEEEeCCCCCCHHHHHHH
Confidence            999865431                     12234444311 1               1145689999999999999999


Q ss_pred             HHHH
Q 018283          343 VDET  346 (358)
Q Consensus       343 i~~~  346 (358)
                      +.+.
T Consensus       157 l~~~  160 (161)
T cd04117         157 LTEL  160 (161)
T ss_pred             HHhh
Confidence            8763

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.88  E-value=1.2e-21  Score=172.08  Aligned_cols=123  Identities=15%  Similarity=0.253  Sum_probs=89.7

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ...+.+.+|||+|+++++..|..|+++++++|+|+|.+          +.+++.....++..+.......+.|++|++||
T Consensus        49 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~----------~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK  118 (183)
T cd04152          49 SKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSV----------DVERMEEAKTELHKITRFSENQGVPVLVLANK  118 (183)
T ss_pred             CCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHhhhhcCCCcEEEEEEC
Confidence            36789999999999999999999999999999999974          44566676677776665444457899999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      +|+....                       ..++...++     .+..  ..   ....+.++.+||++++|++++|+++
T Consensus       119 ~D~~~~~-----------------------~~~~~~~~~-----~~~~--~~---~~~~~~~~~~SA~~~~gi~~l~~~l  165 (183)
T cd04152         119 QDLPNAL-----------------------SVSEVEKLL-----ALHE--LS---ASTPWHVQPACAIIGEGLQEGLEKL  165 (183)
T ss_pred             cCccccC-----------------------CHHHHHHHh-----Cccc--cC---CCCceEEEEeecccCCCHHHHHHHH
Confidence            9985320                       111111111     1000  00   1223667899999999999999999


Q ss_pred             HHHHHH
Q 018283          344 DETLRR  349 (358)
Q Consensus       344 ~~~i~~  349 (358)
                      .+.+++
T Consensus       166 ~~~l~~  171 (183)
T cd04152         166 YEMILK  171 (183)
T ss_pred             HHHHHH
Confidence            998864

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PTZ00369 Ras-like protein; Provisional

Probab=99.88  E-value=1e-21  Score=173.46  Aligned_cols=121  Identities=14%  Similarity=0.165  Sum_probs=92.1

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+++|||+|++.++.+|..|+++++++|+|+|++          +..++.....|+..+.+.....++|+++++|
T Consensus        49 ~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s----------~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n  118 (189)
T PTZ00369         49 DEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSIT----------SRSSFEEIASFREQILRVKDKDRVPMILVGN  118 (189)
T ss_pred             CCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            556788999999999999999999999999999999984          5566777777777765543345789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+++.                     ....++..+.. .               ..+.+++|||+++.||.++|.+
T Consensus       119 K~Dl~~~~~---------------------i~~~~~~~~~~-~---------------~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369        119 KCDLDSERQ---------------------VSTGEGQELAK-S---------------FGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             Ccccccccc---------------------cCHHHHHHHHH-H---------------hCCEEEEeeCCCCCCHHHHHHH
Confidence            999854311                     12233333311 1               1245789999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+.+.
T Consensus       162 l~~~l~~~  169 (189)
T PTZ00369        162 LVREIRKY  169 (189)
T ss_pred             HHHHHHHH
Confidence            99988754

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.88  E-value=7.8e-22  Score=171.80  Aligned_cols=119  Identities=19%  Similarity=0.262  Sum_probs=89.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++|++.++..|..||++++++|||+|.+          +.+++.....++..+++.....++|+++++|
T Consensus        55 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s----------~~~~~~~~~~~l~~~~~~~~~~~~p~viv~N  124 (174)
T cd04153          55 VYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDST----------DRERLPLTKEELYKMLAHEDLRKAVLLVLAN  124 (174)
T ss_pred             EECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHhchhhcCCCEEEEEE
Confidence            455789999999999999999999999999999999974          4567777888888887766566799999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+.                       .+.++..+.+....        .   ..+.+.++.+||++++||+++|++
T Consensus       125 K~Dl~~~-----------------------~~~~~i~~~l~~~~--------~---~~~~~~~~~~SA~~g~gi~e~~~~  170 (174)
T cd04153         125 KQDLKGA-----------------------MTPAEISESLGLTS--------I---RDHTWHIQGCCALTGEGLPEGLDW  170 (174)
T ss_pred             CCCCCCC-----------------------CCHHHHHHHhCccc--------c---cCCceEEEecccCCCCCHHHHHHH
Confidence            9998541                       01111111110000        0   123467888999999999999999


Q ss_pred             HHH
Q 018283          343 VDE  345 (358)
Q Consensus       343 i~~  345 (358)
                      +.+
T Consensus       171 l~~  173 (174)
T cd04153         171 IAS  173 (174)
T ss_pred             Hhc
Confidence            864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.88  E-value=7.6e-22  Score=169.27  Aligned_cols=119  Identities=12%  Similarity=0.231  Sum_probs=88.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC----CCCCcEE
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC----FEKTSFM  258 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~----~~~~~ii  258 (358)
                      ....+.+++|||+|++.++..|..|+++++++|+|+|++          +.+++.....|+..+.....    ..+.|++
T Consensus        45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~~pii  114 (168)
T cd04119          45 RNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVT----------DRQSFEALDSWLKEMKQEGGPHGNMENIVVV  114 (168)
T ss_pred             CCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECC----------CHHHHHhHHHHHHHHHHhccccccCCCceEE
Confidence            556789999999999999999999999999999999984          44555555556655543211    2468999


Q ss_pred             EEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHH
Q 018283          259 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK  338 (358)
Q Consensus       259 lv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~  338 (358)
                      +++||+|+.+++.                     ...+++..+..                ...+.++++||++++|+.+
T Consensus       115 lv~nK~Dl~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~  157 (168)
T cd04119         115 VCANKIDLTKHRA---------------------VSEDEGRLWAE----------------SKGFKYFETSACTGEGVNE  157 (168)
T ss_pred             EEEEchhcccccc---------------------cCHHHHHHHHH----------------HcCCeEEEEECCCCCCHHH
Confidence            9999999864211                     22333333311                1125578999999999999


Q ss_pred             HHHHHHHHHH
Q 018283          339 TFKLVDETLR  348 (358)
Q Consensus       339 vf~~i~~~i~  348 (358)
                      +|+++.+.++
T Consensus       158 l~~~l~~~l~  167 (168)
T cd04119         158 MFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHHh
Confidence            9999998876

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.88  E-value=4.4e-22  Score=173.59  Aligned_cols=128  Identities=16%  Similarity=0.161  Sum_probs=89.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~  261 (358)
                      +.+.+.+.+|||+|++.++..|..||++++++|+|+|++          +.+++.+... |+..+...  .+++|++||+
T Consensus        45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~sf~~~~~~~~~~~~~~--~~~~piilvg  112 (174)
T cd01871          45 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLV----------SPASFENVRAKWYPEVRHH--CPNTPIILVG  112 (174)
T ss_pred             CCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEe
Confidence            556789999999999999999999999999999999984          5677777654 55544432  2479999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+||...+.....+...  .       ......+++.++.. ++              +.+.++++||++++||+++|+
T Consensus       113 nK~Dl~~~~~~~~~~~~~--~-------~~~v~~~~~~~~~~-~~--------------~~~~~~e~Sa~~~~~i~~~f~  168 (174)
T cd01871         113 TKLDLRDDKDTIEKLKEK--K-------LTPITYPQGLAMAK-EI--------------GAVKYLECSALTQKGLKTVFD  168 (174)
T ss_pred             eChhhccChhhHHHHhhc--c-------CCCCCHHHHHHHHH-Hc--------------CCcEEEEecccccCCHHHHHH
Confidence            999996433211000000  0       00133455555422 11              124678999999999999999


Q ss_pred             HHHHH
Q 018283          342 LVDET  346 (358)
Q Consensus       342 ~i~~~  346 (358)
                      .+++.
T Consensus       169 ~l~~~  173 (174)
T cd01871         169 EAIRA  173 (174)
T ss_pred             HHHHh
Confidence            98763

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.88  E-value=6.4e-22  Score=168.72  Aligned_cols=117  Identities=12%  Similarity=0.130  Sum_probs=86.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++.+|..|+++++++++|+|++          +..++.+...|+..+.......+.|+++++|
T Consensus        45 ~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~----------~~~s~~~~~~~~~~i~~~~~~~~~piivv~n  114 (162)
T cd04138          45 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN----------SRKSFEDIHTYREQIKRVKDSDDVPMVLVGN  114 (162)
T ss_pred             CCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            445677899999999999999999999999999999984          4456666666666665543345789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+..                      ....++..+..                ...+.++++||+++.||+++|++
T Consensus       115 K~Dl~~~~----------------------~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~l~~~  156 (162)
T cd04138         115 KCDLAART----------------------VSSRQGQDLAK----------------SYGIPYIETSAKTRQGVEEAFYT  156 (162)
T ss_pred             Ccccccce----------------------ecHHHHHHHHH----------------HhCCeEEEecCCCCCCHHHHHHH
Confidence            99986421                      11223333211                11245788999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      +.+.+
T Consensus       157 l~~~~  161 (162)
T cd04138         157 LVREI  161 (162)
T ss_pred             HHHHh
Confidence            98654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.88  E-value=1.3e-21  Score=169.03  Aligned_cols=119  Identities=18%  Similarity=0.247  Sum_probs=90.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+++||++|++.+...|..++++++++|+|+|++          +..++.+..+|+..+... ...+.|+++++|
T Consensus        48 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~n  116 (167)
T cd01867          48 DGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT----------DEKSFENIRNWMRNIEEH-ASEDVERMLVGN  116 (167)
T ss_pred             CCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECc----------CHHHHHhHHHHHHHHHHh-CCCCCcEEEEEE
Confidence            455688999999999999999999999999999999983          456677777777766543 235789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+.+.+.                     ...+++..+..                ...+.++++||+++.||.++|++
T Consensus       117 K~Dl~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~~v~~~~~~  159 (167)
T cd01867         117 KCDMEEKRV---------------------VSKEEGEALAD----------------EYGIKFLETSAKANINVEEAFFT  159 (167)
T ss_pred             CcccccccC---------------------CCHHHHHHHHH----------------HcCCEEEEEeCCCCCCHHHHHHH
Confidence            999975321                     12233333311                11245789999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.+++
T Consensus       160 i~~~~~~  166 (167)
T cd01867         160 LAKDIKK  166 (167)
T ss_pred             HHHHHHh
Confidence            9998865

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04144 Ras2 Ras2 subfamily

Probab=99.88  E-value=1.4e-21  Score=172.74  Aligned_cols=122  Identities=12%  Similarity=0.155  Sum_probs=88.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC--CCCCCCcEEEE
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ--PCFEKTSFMLF  260 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~--~~~~~~~iilv  260 (358)
                      +...+.+++|||+|++.++..|..||++++++|+|+|++          +.+++.....|+..+...  ....++|++|+
T Consensus        43 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv  112 (190)
T cd04144          43 DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSIT----------SRSTFERVERFREQIQRVKDESAADVPIMIV  112 (190)
T ss_pred             CCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhcccCCCCCEEEE
Confidence            456678999999999999999999999999999999984          445555555555555332  12357899999


Q ss_pred             eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283          261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF  340 (358)
Q Consensus       261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf  340 (358)
                      +||+|+..++.                     ....++.++. +.               ..+.++++||+++.||+++|
T Consensus       113 gNK~Dl~~~~~---------------------v~~~~~~~~~-~~---------------~~~~~~e~SAk~~~~v~~l~  155 (190)
T cd04144         113 GNKCDKVYERE---------------------VSTEEGAALA-RR---------------LGCEFIEASAKTNVNVERAF  155 (190)
T ss_pred             EEChhccccCc---------------------cCHHHHHHHH-HH---------------hCCEEEEecCCCCCCHHHHH
Confidence            99999864321                     1122232221 11               12467899999999999999


Q ss_pred             HHHHHHHHHhh
Q 018283          341 KLVDETLRRRH  351 (358)
Q Consensus       341 ~~i~~~i~~~~  351 (358)
                      .++.+.+.+..
T Consensus       156 ~~l~~~l~~~~  166 (190)
T cd04144         156 YTLVRALRQQR  166 (190)
T ss_pred             HHHHHHHHHhh
Confidence            99999887543

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04134 Rho3 Rho3 subfamily

Probab=99.87  E-value=7.7e-22  Score=174.23  Aligned_cols=132  Identities=12%  Similarity=0.161  Sum_probs=92.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+++||++|++.++.+|..||++++++|+|+|++          +.+++.... .|+..+...  .++.|++||+
T Consensus        44 ~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~----------~~~sf~~~~~~~~~~i~~~--~~~~piilvg  111 (189)
T cd04134          44 DGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVD----------SPDSLENVESKWLGEIREH--CPGVKLVLVA  111 (189)
T ss_pred             CCEEEEEEEEECCCChhccccccccccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence            456689999999999999999999999999999999984          556666554 355555432  2478999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+||.+++-....+.   ....      -....+++.++...               .+.+.+++|||+++.||+++|.
T Consensus       112 NK~Dl~~~~~~~~~~~---~~~~------~~v~~~~~~~~~~~---------------~~~~~~~e~SAk~~~~v~e~f~  167 (189)
T cd04134         112 LKCDLREARNERDDLQ---RYGK------HTISYEEGLAVAKR---------------INALRYLECSAKLNRGVNEAFT  167 (189)
T ss_pred             EChhhccChhhHHHHh---hccC------CCCCHHHHHHHHHH---------------cCCCEEEEccCCcCCCHHHHHH
Confidence            9999976432110000   0000      00233444443110               1225678999999999999999


Q ss_pred             HHHHHHHHh
Q 018283          342 LVDETLRRR  350 (358)
Q Consensus       342 ~i~~~i~~~  350 (358)
                      ++.+.++..
T Consensus       168 ~l~~~~~~~  176 (189)
T cd04134         168 EAARVALNV  176 (189)
T ss_pred             HHHHHHhcc
Confidence            999998754

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.87  E-value=1.6e-21  Score=169.31  Aligned_cols=122  Identities=16%  Similarity=0.138  Sum_probs=88.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+++||++|++.+..+|..||++++++|+|+|++          +..++.....|+..+.+.....+.|+++|+|
T Consensus        45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~iilVgn  114 (170)
T cd04108          45 LGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLT----------DVASLEHTRQWLEDALKENDPSSVLLFLVGT  114 (170)
T ss_pred             CCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence            445688999999999999999999999999999999983          4566666677777765543334678999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+..+.-.  +                 ...+++..+. .+               ....++++||+++.|+.++|+.
T Consensus       115 K~Dl~~~~~~--~-----------------~~~~~~~~~~-~~---------------~~~~~~e~Sa~~g~~v~~lf~~  159 (170)
T cd04108         115 KKDLSSPAQY--A-----------------LMEQDAIKLA-AE---------------MQAEYWSVSALSGENVREFFFR  159 (170)
T ss_pred             ChhcCccccc--c-----------------ccHHHHHHHH-HH---------------cCCeEEEEECCCCCCHHHHHHH
Confidence            9998533110  0                 1112233321 11               1245678999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +...+..
T Consensus       160 l~~~~~~  166 (170)
T cd04108         160 VAALTFE  166 (170)
T ss_pred             HHHHHHH
Confidence            9887743

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.87  E-value=6e-22  Score=163.48  Aligned_cols=120  Identities=13%  Similarity=0.138  Sum_probs=96.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ......+.||||+||++|..+-+.||++.+++++|+|+          +++.+|.....|..++.. .....+.+++|+|
T Consensus        58 ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDI----------TDrdSFqKVKnWV~Elr~-mlGnei~l~IVGN  126 (218)
T KOG0088|consen   58 EDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDI----------TDRDSFQKVKNWVLELRT-MLGNEIELLIVGN  126 (218)
T ss_pred             ccceeeeeeeeccchHhhhccCceEEeCCCceEEEEec----------cchHHHHHHHHHHHHHHH-HhCCeeEEEEecC
Confidence            44678899999999999999999999999999999999          577888888888877744 2334678999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+||.+++-                     ....+|..|-..                -...+++|||+++.+|.++|+.
T Consensus       127 KiDLEeeR~---------------------Vt~qeAe~YAes----------------vGA~y~eTSAk~N~Gi~elFe~  169 (218)
T KOG0088|consen  127 KIDLEEERQ---------------------VTRQEAEAYAES----------------VGALYMETSAKDNVGISELFES  169 (218)
T ss_pred             cccHHHhhh---------------------hhHHHHHHHHHh----------------hchhheecccccccCHHHHHHH
Confidence            999988764                     334555555211                1234678999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +...++..
T Consensus       170 Lt~~MiE~  177 (218)
T KOG0088|consen  170 LTAKMIEH  177 (218)
T ss_pred             HHHHHHHH
Confidence            99888764

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.87  E-value=2.8e-21  Score=169.94  Aligned_cols=126  Identities=18%  Similarity=0.287  Sum_probs=91.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ..+++.+.+||++|++.++..|..||++++++|||+|.+          +..++.++..++..+++.....++|+++++|
T Consensus        57 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~----------~~~~~~~~~~~l~~l~~~~~~~~~piliv~N  126 (184)
T smart00178       57 AIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAY----------DKERFAESKRELDALLSDEELATVPFLILGN  126 (184)
T ss_pred             EECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECC----------cHHHHHHHHHHHHHHHcChhhcCCCEEEEEe
Confidence            445789999999999999999999999999999999984          4567778888888887765667899999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhh-hcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYF-QSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~-~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      |+|+..+.                       +.++..+.+.     +.. .........+.+.++.+||++++|+.++|+
T Consensus       127 K~Dl~~~~-----------------------~~~~i~~~l~-----l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~  178 (184)
T smart00178      127 KIDAPYAA-----------------------SEDELRYALG-----LTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFK  178 (184)
T ss_pred             CccccCCC-----------------------CHHHHHHHcC-----CCcccccccccCCceeEEEEeecccCCChHHHHH
Confidence            99985321                       1111111110     000 000000023567899999999999999999


Q ss_pred             HHHHH
Q 018283          342 LVDET  346 (358)
Q Consensus       342 ~i~~~  346 (358)
                      ++.+.
T Consensus       179 wl~~~  183 (184)
T smart00178      179 WLSQY  183 (184)
T ss_pred             HHHhh
Confidence            99764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.87  E-value=2.9e-21  Score=166.30  Aligned_cols=119  Identities=18%  Similarity=0.283  Sum_probs=90.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+++||++|++.+...|..|+++++++|+|+|++          +.+++.+...|+..+... ...+.|+++++|
T Consensus        47 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~n  115 (166)
T cd01869          47 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLQEIDRY-ASENVNKLLVGN  115 (166)
T ss_pred             CCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECc----------CHHHHHhHHHHHHHHHHh-CCCCCcEEEEEE
Confidence            445678999999999999999999999999999999984          456777777777766442 234689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+.+++.                     ...+++..+.. .               ..+.++++||++++||.++|..
T Consensus       116 K~Dl~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~~v~~~~~~  158 (166)
T cd01869         116 KCDLTDKRV---------------------VDYSEAQEFAD-E---------------LGIPFLETSAKNATNVEQAFMT  158 (166)
T ss_pred             ChhcccccC---------------------CCHHHHHHHHH-H---------------cCCeEEEEECCCCcCHHHHHHH
Confidence            999864321                     12233433321 1               1256789999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.+.+
T Consensus       159 i~~~~~~  165 (166)
T cd01869         159 MAREIKK  165 (166)
T ss_pred             HHHHHHh
Confidence            9988763

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.87  E-value=1.1e-21  Score=174.88  Aligned_cols=117  Identities=15%  Similarity=0.185  Sum_probs=90.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +.+.+.+.+|||+|++.++.+|..||++++++|+|+|++          +..++.....|...+....  .++|++||+|
T Consensus        40 ~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t----------~~~S~~~i~~w~~~i~~~~--~~~piilvgN  107 (200)
T smart00176       40 NRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT----------ARVTYKNVPNWHRDLVRVC--ENIPIVLCGN  107 (200)
T ss_pred             CCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECC----------ChHHHHHHHHHHHHHHHhC--CCCCEEEEEE
Confidence            456799999999999999999999999999999999984          5667777777777665432  4799999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+....+                      . .+..++.     .           ...+.+++|||++++||+++|.+
T Consensus       108 K~Dl~~~~v----------------------~-~~~~~~~-----~-----------~~~~~~~e~SAk~~~~v~~~F~~  148 (200)
T smart00176      108 KVDVKDRKV----------------------K-AKSITFH-----R-----------KKNLQYYDISAKSNYNFEKPFLW  148 (200)
T ss_pred             CcccccccC----------------------C-HHHHHHH-----H-----------HcCCEEEEEeCCCCCCHHHHHHH
Confidence            999853211                      1 1112221     0           12467899999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.++..
T Consensus       149 l~~~i~~~  156 (200)
T smart00176      149 LARKLIGD  156 (200)
T ss_pred             HHHHHHhc
Confidence            99988653

Ran is involved in the active transport of proteins through nuclear pores.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.87  E-value=3.4e-21  Score=165.31  Aligned_cols=119  Identities=16%  Similarity=0.187  Sum_probs=89.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|+++++..|..++++++++|+|+|+          .+.+++.+...|+..+.+.....++|+++++|
T Consensus        44 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~n  113 (164)
T smart00173       44 DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSI----------TDRQSFEEIKKFREQILRVKDRDDVPIVLVGN  113 (164)
T ss_pred             CCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            45668899999999999999999999999999999998          34566767667666665543344789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..+.. .               ..+.++++||+++.|++++|++
T Consensus       114 K~Dl~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~~i~~l~~~  156 (164)
T smart00173      114 KCDLESERV---------------------VSTEEGKELAR-Q---------------WGCPFLETSAKERVNVDEAFYD  156 (164)
T ss_pred             Cccccccce---------------------EcHHHHHHHHH-H---------------cCCEEEEeecCCCCCHHHHHHH
Confidence            999864321                     11223333211 1               1256789999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +.+.+.
T Consensus       157 l~~~~~  162 (164)
T smart00173      157 LVREIR  162 (164)
T ss_pred             HHHHHh
Confidence            998765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04109 Rab28 Rab28 subfamily

Probab=99.87  E-value=2.5e-21  Score=174.49  Aligned_cols=120  Identities=15%  Similarity=0.170  Sum_probs=88.3

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC--CCCCCcEEEEee
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CFEKTSFMLFLN  262 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~--~~~~~~iilv~N  262 (358)
                      ..+.+.+||++|++.++.+|..||++++++|+|+|++          +.+++.....|+..+....  ...++|+++|+|
T Consensus        48 ~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t----------~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgN  117 (215)
T cd04109          48 LNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVT----------NSQSFENLEDWYSMVRKVLKSSETQPLVVLVGN  117 (215)
T ss_pred             CEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhccccCCCceEEEEEE
Confidence            4689999999999999999999999999999999984          4556666655655554321  124578999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+.+.+.                     ...+++..+.. .               ..+.++++||++++||+++|++
T Consensus       118 K~DL~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109         118 KTDLEHNRT---------------------VKDDKHARFAQ-A---------------NGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             Ccccccccc---------------------cCHHHHHHHHH-H---------------cCCEEEEEECCCCCCHHHHHHH
Confidence            999964321                     12233333311 1               1245778999999999999999


Q ss_pred             HHHHHHHhh
Q 018283          343 VDETLRRRH  351 (358)
Q Consensus       343 i~~~i~~~~  351 (358)
                      +++.+....
T Consensus       161 l~~~l~~~~  169 (215)
T cd04109         161 LAAELLGVD  169 (215)
T ss_pred             HHHHHHhcc
Confidence            999987643

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.87  E-value=2.6e-21  Score=167.30  Aligned_cols=116  Identities=16%  Similarity=0.203  Sum_probs=89.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +.+.+.+.+|||+|++.+...|..+|++++++|+|+|+          ++.+++.....|+..+....  .++|+++++|
T Consensus        45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~--~~~piiiv~n  112 (166)
T cd00877          45 NRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDV----------TSRVTYKNVPNWHRDLVRVC--GNIPIVLCGN  112 (166)
T ss_pred             CCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhC--CCCcEEEEEE
Confidence            45678999999999999999999999999999999998          45667777667777765532  2799999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+...                      . .++.++     ..           .+.+.+++|||++++||+++|++
T Consensus       113 K~Dl~~~~~----------------------~-~~~~~~-----~~-----------~~~~~~~e~Sa~~~~~v~~~f~~  153 (166)
T cd00877         113 KVDIKDRKV----------------------K-AKQITF-----HR-----------KKNLQYYEISAKSNYNFEKPFLW  153 (166)
T ss_pred             chhcccccC----------------------C-HHHHHH-----HH-----------HcCCEEEEEeCCCCCChHHHHHH
Confidence            999963211                      0 112222     11           12366889999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.+++
T Consensus       154 l~~~~~~  160 (166)
T cd00877         154 LARKLLG  160 (166)
T ss_pred             HHHHHHh
Confidence            9999875

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=2e-22  Score=166.38  Aligned_cols=121  Identities=17%  Similarity=0.274  Sum_probs=101.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+++|||+||++||++...+|++|-++++++|+          ++..++.+...|+..+-.+....+..|+|++|
T Consensus        63 r~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDl----------T~eqSFLnvrnWlSQL~~hAYcE~PDivlcGN  132 (219)
T KOG0081|consen   63 RGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDL----------TSEQSFLNVRNWLSQLQTHAYCENPDIVLCGN  132 (219)
T ss_pred             cceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEec----------cchHHHHHHHHHHHHHHHhhccCCCCEEEEcC
Confidence            45668899999999999999999999999999999999          57788999999999987777778889999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+||.+.+...                     .++|.. +..+|               .+.+++|||-++.||+++.+.
T Consensus       133 K~DL~~~R~Vs---------------------~~qa~~-La~ky---------------glPYfETSA~tg~Nv~kave~  175 (219)
T KOG0081|consen  133 KADLEDQRVVS---------------------EDQAAA-LADKY---------------GLPYFETSACTGTNVEKAVEL  175 (219)
T ss_pred             ccchhhhhhhh---------------------HHHHHH-HHHHh---------------CCCeeeeccccCcCHHHHHHH
Confidence            99998876522                     233322 23333               367899999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.|+++
T Consensus       176 LldlvM~R  183 (219)
T KOG0081|consen  176 LLDLVMKR  183 (219)
T ss_pred             HHHHHHHH
Confidence            99988765

>cd04116 Rab9 Rab9 subfamily

Probab=99.86  E-value=3.4e-21  Score=166.48  Aligned_cols=117  Identities=17%  Similarity=0.204  Sum_probs=85.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC---CCCCCCcEEE
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ---PCFEKTSFML  259 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~---~~~~~~~iil  259 (358)
                      +...+.+++||++|+++++.+|..||++++++|+|+|++          +.+++.....|...+...   ....++|++|
T Consensus        50 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~piil  119 (170)
T cd04116          50 DGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVD----------DSQSFQNLSNWKKEFIYYADVKEPESFPFVV  119 (170)
T ss_pred             CCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECC----------CHHHHHhHHHHHHHHHHhcccccCCCCcEEE
Confidence            567789999999999999999999999999999999984          445555555555555432   1234689999


Q ss_pred             EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283          260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT  339 (358)
Q Consensus       260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v  339 (358)
                      ++||.|+....                      ...+++.++..+ +              ....++++||+++.|+.++
T Consensus       120 v~nK~Dl~~~~----------------------~~~~~~~~~~~~-~--------------~~~~~~e~Sa~~~~~v~~~  162 (170)
T cd04116         120 LGNKNDIPERQ----------------------VSTEEAQAWCRE-N--------------GDYPYFETSAKDATNVAAA  162 (170)
T ss_pred             EEECccccccc----------------------cCHHHHHHHHHH-C--------------CCCeEEEEECCCCCCHHHH
Confidence            99999985211                      123344443221 1              1245789999999999999


Q ss_pred             HHHHHHH
Q 018283          340 FKLVDET  346 (358)
Q Consensus       340 f~~i~~~  346 (358)
                      |+.+.+.
T Consensus       163 ~~~~~~~  169 (170)
T cd04116         163 FEEAVRR  169 (170)
T ss_pred             HHHHHhh
Confidence            9998764

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.86  E-value=5.5e-21  Score=164.11  Aligned_cols=115  Identities=17%  Similarity=0.175  Sum_probs=86.1

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ++..+.+.+||++|++.     ..|+++++++|+|+|+          ++.+++.+...|+..+.......++|++|++|
T Consensus        43 ~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~----------~~~~sf~~~~~~~~~i~~~~~~~~~piilvgn  107 (158)
T cd04103          43 DGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL----------ENEASFQTVYNLYHQLSSYRNISEIPLILVGT  107 (158)
T ss_pred             CCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEee
Confidence            55568899999999975     3578999999999998          57889999888888887665556789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+......  +                 ...+++.++.. .              .+.+.+++|||+++.||+++|..
T Consensus       108 K~Dl~~~~~~--~-----------------v~~~~~~~~~~-~--------------~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103         108 QDAISESNPR--V-----------------IDDARARQLCA-D--------------MKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             HHHhhhcCCc--c-----------------cCHHHHHHHHH-H--------------hCCCcEEEEecCCCCCHHHHHHH
Confidence            9998532110  0                 22334444321 1              12367889999999999999999


Q ss_pred             HHHH
Q 018283          343 VDET  346 (358)
Q Consensus       343 i~~~  346 (358)
                      +++.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04124 RabL2 RabL2 subfamily

Probab=99.86  E-value=5.3e-21  Score=164.27  Aligned_cols=116  Identities=15%  Similarity=0.195  Sum_probs=85.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.+...|+..+.+.  .++.|+++++|
T Consensus        45 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~--~~~~p~ivv~n  112 (161)
T cd04124          45 EGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVT----------RKITYKNLSKWYEELREY--RPEIPCIVVAN  112 (161)
T ss_pred             CCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh--CCCCcEEEEEE
Confidence            556789999999999999999999999999999999984          344555555566555432  24689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+..+.                        ..++.++     ..           ...+.++.+||+++.|+.++|+.
T Consensus       113 K~Dl~~~~------------------------~~~~~~~-----~~-----------~~~~~~~~~Sa~~~~gv~~l~~~  152 (161)
T cd04124         113 KIDLDPSV------------------------TQKKFNF-----AE-----------KHNLPLYYVSAADGTNVVKLFQD  152 (161)
T ss_pred             CccCchhH------------------------HHHHHHH-----HH-----------HcCCeEEEEeCCCCCCHHHHHHH
Confidence            99984210                        1112222     11           11255778999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+++.
T Consensus       153 l~~~~~~~  160 (161)
T cd04124         153 AIKLAVSY  160 (161)
T ss_pred             HHHHHHhc
Confidence            99888753

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.86  E-value=3.6e-21  Score=164.78  Aligned_cols=118  Identities=17%  Similarity=0.220  Sum_probs=93.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.+...+..++++++++|+|+|+          ++.+++.....|+..+..... .++|++|++|
T Consensus        44 ~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~----------~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~  112 (162)
T PF00071_consen   44 DGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDV----------TDEESFENLKKWLEEIQKYKP-EDIPIIVVGN  112 (162)
T ss_dssp             TTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEET----------TBHHHHHTHHHHHHHHHHHST-TTSEEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccc----------ccccccccccccccccccccc-ccccceeeec
Confidence            56788999999999999999999999999999999998          466777777777777654322 4689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+.+++.                     ...+++.++..+                ..+.++++||+++.||.++|..
T Consensus       113 K~D~~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~e~Sa~~~~~v~~~f~~  155 (162)
T PF00071_consen  113 KSDLSDERE---------------------VSVEEAQEFAKE----------------LGVPYFEVSAKNGENVKEIFQE  155 (162)
T ss_dssp             TTTGGGGSS---------------------SCHHHHHHHHHH----------------TTSEEEEEBTTTTTTHHHHHHH
T ss_pred             ccccccccc---------------------chhhHHHHHHHH----------------hCCEEEEEECCCCCCHHHHHHH
Confidence            999976321                     234455544221                1267899999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +.+.|+
T Consensus       156 ~i~~i~  161 (162)
T PF00071_consen  156 LIRKIL  161 (162)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999886

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.86  E-value=6.1e-21  Score=165.30  Aligned_cols=118  Identities=19%  Similarity=0.244  Sum_probs=88.6

Q ss_pred             cccceEEEEEecCCCchhh-hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNER-RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r-~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+||++|++.++ ..|..|+++++++|+|+|+          ++..++.....|+..+.......++|+++|+
T Consensus        47 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~  116 (170)
T cd04115          47 DGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDV----------TNMASFHSLPSWIEECEQHSLPNEVPRILVG  116 (170)
T ss_pred             CCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEEC----------CCHHHHHhHHHHHHHHHHhcCCCCCCEEEEE
Confidence            4566899999999999997 5899999999999999998          4556677777777666554444679999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC---hhhHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD---PKLVKK  338 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d---~~ni~~  338 (358)
                      ||+|+.+.+.                     ...+++..+.     .           ...+.+++|||++   +.||.+
T Consensus       117 nK~Dl~~~~~---------------------~~~~~~~~~~-----~-----------~~~~~~~e~Sa~~~~~~~~i~~  159 (170)
T cd04115         117 NKCDLREQIQ---------------------VPTDLAQRFA-----D-----------AHSMPLFETSAKDPSENDHVEA  159 (170)
T ss_pred             ECccchhhcC---------------------CCHHHHHHHH-----H-----------HcCCcEEEEeccCCcCCCCHHH
Confidence            9999975431                     1122233221     1           1125678999999   999999


Q ss_pred             HHHHHHHHH
Q 018283          339 TFKLVDETL  347 (358)
Q Consensus       339 vf~~i~~~i  347 (358)
                      +|..+++.+
T Consensus       160 ~f~~l~~~~  168 (170)
T cd04115         160 IFMTLAHKL  168 (170)
T ss_pred             HHHHHHHHh
Confidence            999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.86  E-value=5.5e-21  Score=175.75  Aligned_cols=119  Identities=12%  Similarity=0.070  Sum_probs=91.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC--------CCCC
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--------CFEK  254 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~--------~~~~  254 (358)
                      +...+.++||||+|++.++.++..|+.+++++|+|||+          ++.+++++...|++.+....        ...+
T Consensus        44 ~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv----------~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~  113 (247)
T cd04143          44 RGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSL----------DNRESFEEVCRLREQILETKSCLKNKTKENVK  113 (247)
T ss_pred             CCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhhcccccccccCCC
Confidence            55668999999999999999999999999999999998          45677888888887776532        2357


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      +|++|++||+|+..++.                     ...+++.+++..               ...+.++++||+++.
T Consensus       114 ~piIivgNK~Dl~~~~~---------------------v~~~ei~~~~~~---------------~~~~~~~evSAktg~  157 (247)
T cd04143         114 IPMVICGNKADRDFPRE---------------------VQRDEVEQLVGG---------------DENCAYFEVSAKKNS  157 (247)
T ss_pred             CcEEEEEECccchhccc---------------------cCHHHHHHHHHh---------------cCCCEEEEEeCCCCC
Confidence            89999999999964321                     223333333211               123668899999999


Q ss_pred             hHHHHHHHHHHHH
Q 018283          335 LVKKTFKLVDETL  347 (358)
Q Consensus       335 ni~~vf~~i~~~i  347 (358)
                      ||+++|+++....
T Consensus       158 gI~elf~~L~~~~  170 (247)
T cd04143         158 NLDEMFRALFSLA  170 (247)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998754

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04111 Rab39 Rab39 subfamily

Probab=99.86  E-value=6.2e-21  Score=171.51  Aligned_cols=120  Identities=18%  Similarity=0.211  Sum_probs=92.4

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ...+.+++|||+||+.+...|..||++++++|+|+|+          ++.+++.+...|+..+........+|++|++||
T Consensus        49 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~----------~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK  118 (211)
T cd04111          49 GVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDI----------TNRESFEHVHDWLEEARSHIQPHRPVFILVGHK  118 (211)
T ss_pred             CCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEc
Confidence            4567899999999999999999999999999999998          456778788888887765433346789999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      .|+...+.                     ...+++..+ .+.               ..+.++++||++++||.++|+.+
T Consensus       119 ~Dl~~~~~---------------------v~~~~~~~~-~~~---------------~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111         119 CDLESQRQ---------------------VTREEAEKL-AKD---------------LGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             cccccccc---------------------cCHHHHHHH-HHH---------------hCCEEEEEeCCCCCCHHHHHHHH
Confidence            99865321                     122333332 111               22678899999999999999999


Q ss_pred             HHHHHHh
Q 018283          344 DETLRRR  350 (358)
Q Consensus       344 ~~~i~~~  350 (358)
                      .+.+.+.
T Consensus       162 ~~~~~~~  168 (211)
T cd04111         162 TQEIYER  168 (211)
T ss_pred             HHHHHHH
Confidence            9988754

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04125 RabA_like RabA-like subfamily

Probab=99.86  E-value=8e-21  Score=167.34  Aligned_cols=120  Identities=17%  Similarity=0.218  Sum_probs=90.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..++++++++|+|+|++          +..++.....|+..+.... ..+.|+++++|
T Consensus        45 ~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~----------~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~n  113 (188)
T cd04125          45 ENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVT----------DQESFENLKFWINEINRYA-RENVIKVIVAN  113 (188)
T ss_pred             CCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEE
Confidence            455788999999999999999999999999999999984          4566777777776665422 23589999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+.+.+.                     .+.+.+..+..                ...+.++++||+++.||+++|.+
T Consensus       114 K~Dl~~~~~---------------------v~~~~~~~~~~----------------~~~~~~~evSa~~~~~i~~~f~~  156 (188)
T cd04125         114 KSDLVNNKV---------------------VDSNIAKSFCD----------------SLNIPFFETSAKQSINVEEAFIL  156 (188)
T ss_pred             CCCCccccc---------------------CCHHHHHHHHH----------------HcCCeEEEEeCCCCCCHHHHHHH
Confidence            999864321                     12233333311                11246789999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+++.
T Consensus       157 l~~~~~~~  164 (188)
T cd04125         157 LVKLIIKR  164 (188)
T ss_pred             HHHHHHHH
Confidence            99998753

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04177 RSR1 RSR1 subgroup

Probab=99.86  E-value=8.4e-21  Score=164.02  Aligned_cols=121  Identities=14%  Similarity=0.154  Sum_probs=90.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+++||++|++.++.+|..++++++++|+|+|++          +.+.++....|+..+.......+.|+++++|
T Consensus        45 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~----------~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n  114 (168)
T cd04177          45 DGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVT----------SEASLNELGELREQVLRIKDSDNVPMVLVGN  114 (168)
T ss_pred             CCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhhCCCCCCEEEEEE
Confidence            556689999999999999999999999999999999984          4556666666666665433345789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+...+.                     ...+++.++ .+++              +.+.++++||+.+.||.++|++
T Consensus       115 K~D~~~~~~---------------------~~~~~~~~~-~~~~--------------~~~~~~~~SA~~~~~i~~~f~~  158 (168)
T cd04177         115 KADLEDDRQ---------------------VSREDGVSL-SQQW--------------GNVPFYETSARKRTNVDEVFID  158 (168)
T ss_pred             ChhccccCc---------------------cCHHHHHHH-HHHc--------------CCceEEEeeCCCCCCHHHHHHH
Confidence            999865321                     112223322 1111              1245788999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.++.
T Consensus       159 i~~~~~~  165 (168)
T cd04177         159 LVRQIIC  165 (168)
T ss_pred             HHHHHhh
Confidence            9988865

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.86  E-value=7.7e-21  Score=162.40  Aligned_cols=118  Identities=19%  Similarity=0.329  Sum_probs=87.2

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  264 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~  264 (358)
                      ..+.+.+||++|++.++..|..|+++++++|||+|.+          +..++.+...++..++......+.|+++++||+
T Consensus        42 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~----------~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~  111 (160)
T cd04156          42 KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSS----------DEARLDESQKELKHILKNEHIKGVPVVLLANKQ  111 (160)
T ss_pred             CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC----------cHHHHHHHHHHHHHHHhchhhcCCCEEEEEECc
Confidence            4578999999999999999999999999999999974          445778888888888776655689999999999


Q ss_pred             CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283          265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD  344 (358)
Q Consensus       265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~  344 (358)
                      |+....                       ..++....+.  ....     .   ..+.+.++.|||++++||.++|++|.
T Consensus       112 Dl~~~~-----------------------~~~~i~~~~~--~~~~-----~---~~~~~~~~~~Sa~~~~gv~~~~~~i~  158 (160)
T cd04156         112 DLPGAL-----------------------TAEEITRRFK--LKKY-----C---SDRDWYVQPCSAVTGEGLAEAFRKLA  158 (160)
T ss_pred             ccccCc-----------------------CHHHHHHHcC--Cccc-----C---CCCcEEEEecccccCCChHHHHHHHh
Confidence            985320                       0111111100  0000     0   12346778899999999999999885


Q ss_pred             H
Q 018283          345 E  345 (358)
Q Consensus       345 ~  345 (358)
                      +
T Consensus       159 ~  159 (160)
T cd04156         159 S  159 (160)
T ss_pred             c
Confidence            3

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=6.2e-22  Score=161.02  Aligned_cols=134  Identities=18%  Similarity=0.316  Sum_probs=109.9

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|++...+      .++++++++||.|||.+.|+.|+.||.+++++|||||.          +++.++.-+...|..
T Consensus        47 kPtigfnve~v------~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDs----------sd~dris~a~~el~~  110 (182)
T KOG0072|consen   47 KPTIGFNVETV------PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDS----------SDRDRISIAGVELYS  110 (182)
T ss_pred             CCCCCcCcccc------ccccccceeeEccCcccccHHHHHHhcccceEEEEEec----------cchhhhhhhHHHHHH
Confidence            47888887777      78999999999999999999999999999999999996          567788888899999


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      ++..+.+++.-+++|+||+|......                       ..++..-+.-  ..+         +++.+.+
T Consensus       111 mL~E~eLq~a~llv~anKqD~~~~~t-----------------------~~E~~~~L~l--~~L---------k~r~~~I  156 (182)
T KOG0072|consen  111 MLQEEELQHAKLLVFANKQDYSGALT-----------------------RSEVLKMLGL--QKL---------KDRIWQI  156 (182)
T ss_pred             HhccHhhcCceEEEEeccccchhhhh-----------------------HHHHHHHhCh--HHH---------hhheeEE
Confidence            99999999999999999999854421                       2222221111  111         3567999


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~  349 (358)
                      +.+||..+++++.+++|+.+.+..
T Consensus       157 v~tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  157 VKTSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             EeeccccccCCcHHHHHHHHHHhc
Confidence            999999999999999999998864

>cd04140 ARHI_like ARHI subfamily

Probab=99.86  E-value=8.2e-21  Score=163.62  Aligned_cols=116  Identities=17%  Similarity=0.143  Sum_probs=83.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC--CCCCCCcEEEE
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ--PCFEKTSFMLF  260 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~--~~~~~~~iilv  260 (358)
                      +...+.+.+||++|+++++.+|..++++++++|+|+|++          +..++.+...|++.+...  ....++|++||
T Consensus        45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv  114 (165)
T cd04140          45 SKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVT----------SKQSLEELKPIYELICEIKGNNIEKIPIMLV  114 (165)
T ss_pred             CCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence            446688999999999999999999999999999999984          445555555555444321  12357899999


Q ss_pred             eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283          261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF  340 (358)
Q Consensus       261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf  340 (358)
                      +||+|+.+.+.                     ....++..+..                ...+.++++||++++||+++|
T Consensus       115 ~nK~Dl~~~~~---------------------v~~~~~~~~~~----------------~~~~~~~e~SA~~g~~v~~~f  157 (165)
T cd04140         115 GNKCDESHKRE---------------------VSSNEGAACAT----------------EWNCAFMETSAKTNHNVQELF  157 (165)
T ss_pred             EECccccccCe---------------------ecHHHHHHHHH----------------HhCCcEEEeecCCCCCHHHHH
Confidence            99999854211                     11223333211                112457899999999999999


Q ss_pred             HHHHH
Q 018283          341 KLVDE  345 (358)
Q Consensus       341 ~~i~~  345 (358)
                      +++.+
T Consensus       158 ~~l~~  162 (165)
T cd04140         158 QELLN  162 (165)
T ss_pred             HHHHh
Confidence            99864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01864 Rab19 Rab19 subfamily

Probab=99.85  E-value=1.1e-20  Score=162.53  Aligned_cols=117  Identities=18%  Similarity=0.258  Sum_probs=86.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..++++++++|+|+|++          +..++.....|+..+.... ..++|+++|+|
T Consensus        48 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~n  116 (165)
T cd01864          48 EGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDIT----------RRSSFESVPHWIEEVEKYG-ASNVVLLLIGN  116 (165)
T ss_pred             CCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECc----------CHHHHHhHHHHHHHHHHhC-CCCCcEEEEEE
Confidence            445578999999999999999999999999999999984          4456666666777665432 34789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+.+.                     ...+++..+.. .              .+...++++||+++.|++++|+.
T Consensus       117 K~Dl~~~~~---------------------~~~~~~~~~~~-~--------------~~~~~~~e~Sa~~~~~v~~~~~~  160 (165)
T cd01864         117 KCDLEEQRE---------------------VLFEEACTLAE-K--------------NGMLAVLETSAKESQNVEEAFLL  160 (165)
T ss_pred             Ccccccccc---------------------cCHHHHHHHHH-H--------------cCCcEEEEEECCCCCCHHHHHHH
Confidence            999965321                     12233333211 1              11245788999999999999999


Q ss_pred             HHHH
Q 018283          343 VDET  346 (358)
Q Consensus       343 i~~~  346 (358)
                      +.+.
T Consensus       161 l~~~  164 (165)
T cd01864         161 MATE  164 (165)
T ss_pred             HHHh
Confidence            8864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04112 Rab26 Rab26 subfamily

Probab=99.85  E-value=1.5e-20  Score=166.27  Aligned_cols=122  Identities=19%  Similarity=0.214  Sum_probs=91.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.||||+||+++...|..|+++++++|+|+|++          +.+++.+...|+..+... ...+.|+++++|
T Consensus        46 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~----------~~~s~~~~~~~~~~i~~~-~~~~~piiiv~N  114 (191)
T cd04112          46 DGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDIT----------NKASFDNIRAWLTEIKEY-AQEDVVIMLLGN  114 (191)
T ss_pred             CCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh-CCCCCcEEEEEE
Confidence            456689999999999999999999999999999999984          456676666677666543 223689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+..++.                     ...+++..+ ...               ..+.++++||+++.|+.++|.+
T Consensus       115 K~Dl~~~~~---------------------~~~~~~~~l-~~~---------------~~~~~~e~Sa~~~~~v~~l~~~  157 (191)
T cd04112         115 KADMSGERV---------------------VKREDGERL-AKE---------------YGVPFMETSAKTGLNVELAFTA  157 (191)
T ss_pred             cccchhccc---------------------cCHHHHHHH-HHH---------------cCCeEEEEeCCCCCCHHHHHHH
Confidence            999964321                     111222222 111               1245789999999999999999


Q ss_pred             HHHHHHHhhh
Q 018283          343 VDETLRRRHL  352 (358)
Q Consensus       343 i~~~i~~~~~  352 (358)
                      +++.+.....
T Consensus       158 l~~~~~~~~~  167 (191)
T cd04112         158 VAKELKHRKY  167 (191)
T ss_pred             HHHHHHHhcc
Confidence            9999987643

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=99.85  E-value=1e-20  Score=161.96  Aligned_cols=117  Identities=15%  Similarity=0.187  Sum_probs=88.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..++++++++|+|+|++          +..++.....|+..+... ..+++|++|++|
T Consensus        45 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~~iivv~n  113 (161)
T cd04113          45 GGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT----------NRTSFEALPTWLSDARAL-ASPNIVVILVGN  113 (161)
T ss_pred             CCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh-CCCCCeEEEEEE
Confidence            455688999999999999999999999999999999984          455666666666655332 235789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+...+.                     ...+++..+...                ..+.++++||+++.|+.++|++
T Consensus       114 K~D~~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~  156 (161)
T cd04113         114 KSDLADQRE---------------------VTFLEASRFAQE----------------NGLLFLETSALTGENVEEAFLK  156 (161)
T ss_pred             chhcchhcc---------------------CCHHHHHHHHHH----------------cCCEEEEEECCCCCCHHHHHHH
Confidence            999965321                     223444443221                1267889999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      +++.+
T Consensus       157 ~~~~~  161 (161)
T cd04113         157 CARSI  161 (161)
T ss_pred             HHHhC
Confidence            98753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.85  E-value=8.7e-21  Score=162.45  Aligned_cols=118  Identities=15%  Similarity=0.188  Sum_probs=88.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.....|+..+.+.....+.|++|++|
T Consensus        46 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piiiv~N  115 (164)
T cd04145          46 DGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVT----------DRGSFEEVDKFHTQILRVKDRDEFPMILVGN  115 (164)
T ss_pred             CCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhCCCCCCEEEEee
Confidence            455688999999999999999999999999999999984          4556777777777776543345789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++.++...                ..+.++++||+++.||+++|++
T Consensus       116 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~  158 (164)
T cd04145         116 KADLEHQRK---------------------VSREEGQELARK----------------LKIPYIETSAKDRLNVDKAFHD  158 (164)
T ss_pred             Cccccccce---------------------ecHHHHHHHHHH----------------cCCcEEEeeCCCCCCHHHHHHH
Confidence            999864321                     122333333211                1245688999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      +.+.+
T Consensus       159 l~~~~  163 (164)
T cd04145         159 LVRVI  163 (164)
T ss_pred             HHHhh
Confidence            88754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2.7e-21  Score=162.26  Aligned_cols=136  Identities=20%  Similarity=0.311  Sum_probs=107.4

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .+|+|.+.-.+      ......+.+||.|||+..|++|..||..++++|||+|.          ++.+|+.++...|+.
T Consensus        54 ~~tvgLnig~i------~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa----------~~~eR~~~~~t~~~~  117 (197)
T KOG0076|consen   54 TPTVGLNIGTI------EVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDA----------TDRERFEESKTAFEK  117 (197)
T ss_pred             ecccceeecce------eeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecC----------CCHHHHHHHHHHHHH
Confidence            57888887666      66788999999999999999999999999999999995          678999999999999


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      ++.+....++|+++++||+|+.++.-.                    .++.....-     .+++        ..+...+
T Consensus       118 v~~~E~leg~p~L~lankqd~q~~~~~--------------------~El~~~~~~-----~e~~--------~~rd~~~  164 (197)
T KOG0076|consen  118 VVENEKLEGAPVLVLANKQDLQNAMEA--------------------AELDGVFGL-----AELI--------PRRDNPF  164 (197)
T ss_pred             HHHHHHhcCCchhhhcchhhhhhhhhH--------------------HHHHHHhhh-----hhhc--------CCccCcc
Confidence            999999999999999999998664210                    111111110     1221        2334445


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHHh
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRRR  350 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~~  350 (358)
                      .-+||.+|+||++...|+++.+-+.
T Consensus       165 ~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  165 QPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             ccchhhhcccHHHHHHHHHHHHhhc
Confidence            5589999999999999999888654

>cd01866 Rab2 Rab2 subfamily

Probab=99.85  E-value=1.8e-20  Score=162.01  Aligned_cols=119  Identities=15%  Similarity=0.219  Sum_probs=91.1

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++|++.++..+..|+++++++|||+|++          +.+++.....|+..+.... .+++|+++++|
T Consensus        49 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~pvivv~n  117 (168)
T cd01866          49 DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLTSWLEDARQHS-NSNMTIMLIGN  117 (168)
T ss_pred             CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCCcEEEEEE
Confidence            555678999999999999999999999999999999983          5567777777777775432 35789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+..++.                     ...+++..+..                ...+.++++||++++|+.++|..
T Consensus       118 K~Dl~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~e~Sa~~~~~i~~~~~~  160 (168)
T cd01866         118 KCDLESRRE---------------------VSYEEGEAFAK----------------EHGLIFMETSAKTASNVEEAFIN  160 (168)
T ss_pred             CcccccccC---------------------CCHHHHHHHHH----------------HcCCEEEEEeCCCCCCHHHHHHH
Confidence            999864321                     12333333321                11256789999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.+++
T Consensus       161 ~~~~~~~  167 (168)
T cd01866         161 TAKEIYE  167 (168)
T ss_pred             HHHHHHh
Confidence            9988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01868 Rab11_like Rab11-like

Probab=99.85  E-value=1.9e-20  Score=160.86  Aligned_cols=117  Identities=20%  Similarity=0.239  Sum_probs=87.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+++||++|++.++.+|..++++++++|+|+|++          +.+++.+...|+..+.... ..++|++|++|
T Consensus        48 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~n  116 (165)
T cd01868          48 DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT----------KKQTFENVERWLKELRDHA-DSNIVIMLVGN  116 (165)
T ss_pred             CCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEE
Confidence            445678999999999999999999999999999999984          4556666667777665432 33689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+...+.                     ...++...+...                ..+.++++||+++.|++++|++
T Consensus       117 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~l~~~  159 (165)
T cd01868         117 KSDLRHLRA---------------------VPTEEAKAFAEK----------------NGLSFIETSALDGTNVEEAFKQ  159 (165)
T ss_pred             Ccccccccc---------------------CCHHHHHHHHHH----------------cCCEEEEEECCCCCCHHHHHHH
Confidence            999864321                     122333333210                1256789999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      +.+.+
T Consensus       160 l~~~i  164 (165)
T cd01868         160 LLTEI  164 (165)
T ss_pred             HHHHh
Confidence            88765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PLN03108 Rab family protein; Provisional

Probab=99.85  E-value=2e-20  Score=168.06  Aligned_cols=120  Identities=14%  Similarity=0.246  Sum_probs=91.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.....|+..+.... ..+.|+++++|
T Consensus        51 ~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~----------~~~s~~~l~~~~~~~~~~~-~~~~piiiv~n  119 (210)
T PLN03108         51 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLASWLEDARQHA-NANMTIMLIGN  119 (210)
T ss_pred             CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECC----------cHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence            556678999999999999999999999999999999984          4566666666766654432 34789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+...+.                     ...+++.++..                ...+.++++||+++.||.++|.+
T Consensus       120 K~Dl~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~e~Sa~~~~~v~e~f~~  162 (210)
T PLN03108        120 KCDLAHRRA---------------------VSTEEGEQFAK----------------EHGLIFMEASAKTAQNVEEAFIK  162 (210)
T ss_pred             CccCccccC---------------------CCHHHHHHHHH----------------HcCCEEEEEeCCCCCCHHHHHHH
Confidence            999865321                     12334444321                12356889999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +++.++++
T Consensus       163 l~~~~~~~  170 (210)
T PLN03108        163 TAAKIYKK  170 (210)
T ss_pred             HHHHHHHH
Confidence            99998764

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.85  E-value=4e-20  Score=158.30  Aligned_cols=117  Identities=19%  Similarity=0.264  Sum_probs=90.1

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|+++++..|..++++++++|||+|.+          +.+++.....|+..+..... .++|+++++|
T Consensus        46 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~~iivv~n  114 (163)
T cd01860          46 DDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDIT----------SEESFEKAKSWVKELQRNAS-PNIIIALVGN  114 (163)
T ss_pred             CCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhCC-CCCeEEEEEE
Confidence            566789999999999999999999999999999999973          55667777777777755432 5789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+...+.                     ...+++..+...                ..+.++++||+++.|+.++|++
T Consensus       115 K~D~~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~l~~~  157 (163)
T cd01860         115 KADLESKRQ---------------------VSTEEAQEYADE----------------NGLLFFETSAKTGENVNELFTE  157 (163)
T ss_pred             CccccccCc---------------------CCHHHHHHHHHH----------------cCCEEEEEECCCCCCHHHHHHH
Confidence            999864211                     122333333111                1256889999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      +.+.|
T Consensus       158 l~~~l  162 (163)
T cd01860         158 IAKKL  162 (163)
T ss_pred             HHHHh
Confidence            98875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01892 Miro2 Miro2 subfamily

Probab=99.85  E-value=5.1e-21  Score=165.99  Aligned_cols=118  Identities=10%  Similarity=0.007  Sum_probs=84.1

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ++..+.+.+||++|++.++..|..||++++++|||+|.+          +..++.....|+..+..   ..++|+++|+|
T Consensus        50 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~----------~~~s~~~~~~~~~~~~~---~~~~p~iiv~N  116 (169)
T cd01892          50 YGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSS----------DPKSFSYCAEVYKKYFM---LGEIPCLFVAA  116 (169)
T ss_pred             CCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCC----------CHHHHHHHHHHHHHhcc---CCCCeEEEEEE
Confidence            556688999999999999999999999999999999984          44566666666665422   23689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+.+++...                     ..++.++ .+.+        +     - -.++++||++++|++++|+.
T Consensus       117 K~Dl~~~~~~~---------------------~~~~~~~-~~~~--------~-----~-~~~~~~Sa~~~~~v~~lf~~  160 (169)
T cd01892         117 KADLDEQQQRY---------------------EVQPDEF-CRKL--------G-----L-PPPLHFSSKLGDSSNELFTK  160 (169)
T ss_pred             ccccccccccc---------------------ccCHHHH-HHHc--------C-----C-CCCEEEEeccCccHHHHHHH
Confidence            99986432100                     0111111 1111        0     0 12367999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.++.
T Consensus       161 l~~~~~~  167 (169)
T cd01892         161 LATAAQY  167 (169)
T ss_pred             HHHHhhC
Confidence            9988763

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1.3e-20  Score=152.94  Aligned_cols=128  Identities=16%  Similarity=0.181  Sum_probs=97.2

Q ss_pred             CceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHc
Q 018283          169 TGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK  248 (358)
Q Consensus       169 ~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~  248 (358)
                      .|...+.+      .++.+++++||++||++||...+.||+++.+.+.|+|++          .+......-.|+....+
T Consensus        48 fgtriiev------sgqkiklqiwdtagqerfravtrsyyrgaagalmvydit----------rrstynhlsswl~dar~  111 (215)
T KOG0097|consen   48 FGTRIIEV------SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT----------RRSTYNHLSSWLTDARN  111 (215)
T ss_pred             cceeEEEe------cCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEeh----------hhhhhhhHHHHHhhhhc
Confidence            34455666      889999999999999999999999999999999999984          33333333344444322


Q ss_pred             CCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEe
Q 018283          249 QPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRT  328 (358)
Q Consensus       249 ~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~t  328 (358)
                       -.-+++.|+|++||.||...+-                     ..+++|..|-.                +..+.+.+.
T Consensus       112 -ltnpnt~i~lignkadle~qrd---------------------v~yeeak~fae----------------engl~fle~  153 (215)
T KOG0097|consen  112 -LTNPNTVIFLIGNKADLESQRD---------------------VTYEEAKEFAE----------------ENGLMFLEA  153 (215)
T ss_pred             -cCCCceEEEEecchhhhhhccc---------------------CcHHHHHHHHh----------------hcCeEEEEe
Confidence             2235789999999999976542                     44677776621                245788899


Q ss_pred             eccChhhHHHHHHHHHHHHHHh
Q 018283          329 TALDPKLVKKTFKLVDETLRRR  350 (358)
Q Consensus       329 SA~d~~ni~~vf~~i~~~i~~~  350 (358)
                      ||++|+||+++|-.-.+.|.+.
T Consensus       154 saktg~nvedafle~akkiyqn  175 (215)
T KOG0097|consen  154 SAKTGQNVEDAFLETAKKIYQN  175 (215)
T ss_pred             cccccCcHHHHHHHHHHHHHHh
Confidence            9999999999999999888753

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.84  E-value=2.6e-20  Score=159.36  Aligned_cols=114  Identities=18%  Similarity=0.258  Sum_probs=84.2

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ...+.+++||++|++.++..|..|+++++++++|+|++          +.+++.....|...+...  ..+.|+++++||
T Consensus        48 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~----------~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK  115 (162)
T cd04106          48 DEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTT----------DRESFEAIESWKEKVEAE--CGDIPMVLVQTK  115 (162)
T ss_pred             CCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence            45689999999999999999999999999999999984          445666555666555332  347899999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      .|+..+..                     ...+++..+.. .               ..+.++++||+++.|++++|+++
T Consensus       116 ~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~~v~~l~~~l  158 (162)
T cd04106         116 IDLLDQAV---------------------ITNEEAEALAK-R---------------LQLPLFRTSVKDDFNVTELFEYL  158 (162)
T ss_pred             hhcccccC---------------------CCHHHHHHHHH-H---------------cCCeEEEEECCCCCCHHHHHHHH
Confidence            99964321                     12233333211 1               12467889999999999999998


Q ss_pred             HHH
Q 018283          344 DET  346 (358)
Q Consensus       344 ~~~  346 (358)
                      .+.
T Consensus       159 ~~~  161 (162)
T cd04106         159 AEK  161 (162)
T ss_pred             HHh
Confidence            753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.84  E-value=6.2e-20  Score=156.57  Aligned_cols=129  Identities=20%  Similarity=0.329  Sum_probs=96.7

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  246 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i  246 (358)
                      +|.|+....+      ....+.+.+||++|++.++..|..++++++++++|+|.          .+..++.++..++..+
T Consensus        29 ~t~~~~~~~~------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~----------~~~~~~~~~~~~~~~~   92 (158)
T cd00878          29 PTIGFNVETV------EYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS----------SDRERIEEAKEELHKL   92 (158)
T ss_pred             CCcCcceEEE------EECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHH
Confidence            4555555555      55678999999999999999999999999999999998          3556888888999888


Q ss_pred             HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283          247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY  326 (358)
Q Consensus       247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~  326 (358)
                      .......+.|+++++||+|+....                       ..++..+.+....        .   ..+.+.++
T Consensus        93 ~~~~~~~~~piiiv~nK~D~~~~~-----------------------~~~~~~~~~~~~~--------~---~~~~~~~~  138 (158)
T cd00878          93 LNEEELKGVPLLIFANKQDLPGAL-----------------------SVSELIEKLGLEK--------I---LGRRWHIQ  138 (158)
T ss_pred             HhCcccCCCcEEEEeeccCCcccc-----------------------CHHHHHHhhChhh--------c---cCCcEEEE
Confidence            776555689999999999986421                       1122222111110        0   12457788


Q ss_pred             EeeccChhhHHHHHHHHHH
Q 018283          327 RTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       327 ~tSA~d~~ni~~vf~~i~~  345 (358)
                      .+||+++.|+.++|+++.+
T Consensus       139 ~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         139 PCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             EeeCCCCCCHHHHHHHHhh
Confidence            9999999999999998865

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.84  E-value=1.7e-20  Score=166.55  Aligned_cols=130  Identities=16%  Similarity=0.188  Sum_probs=84.1

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~  261 (358)
                      ++..+.+++|||+||+.  .....||++++++|+|+|+          ++..++.+... |...+...  .+++|++||+
T Consensus        62 ~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~----------t~~~Sf~~~~~~w~~~i~~~--~~~~piilvg  127 (195)
T cd01873          62 DGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSI----------ASPNSLRNVKTMWYPEIRHF--CPRVPVILVG  127 (195)
T ss_pred             CCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEEC----------CChhHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence            56679999999999975  3456699999999999998          45667776654 55555332  2478999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCC-CCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVS-TGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF  340 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~-~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf  340 (358)
                      ||+||.......  .... .-+...+.. ......+++.++-.                ...+.+++|||++++||+++|
T Consensus       128 NK~DL~~~~~~~--~~~~-~~~~~~~~~~~~~V~~~e~~~~a~----------------~~~~~~~E~SAkt~~~V~e~F  188 (195)
T cd01873         128 CKLDLRYADLDE--VNRA-RRPLARPIKNADILPPETGRAVAK----------------ELGIPYYETSVVTQFGVKDVF  188 (195)
T ss_pred             Echhccccccch--hhhc-ccccccccccCCccCHHHHHHHHH----------------HhCCEEEEcCCCCCCCHHHHH
Confidence            999996421100  0000 000000000 01134566665521                123568899999999999999


Q ss_pred             HHHHH
Q 018283          341 KLVDE  345 (358)
Q Consensus       341 ~~i~~  345 (358)
                      +.+.+
T Consensus       189 ~~~~~  193 (195)
T cd01873         189 DNAIR  193 (195)
T ss_pred             HHHHH
Confidence            98875

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.84  E-value=2e-20  Score=164.45  Aligned_cols=125  Identities=21%  Similarity=0.184  Sum_probs=90.6

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEee
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ...+.+.+|||+|++.++..|..++++++++|||+|++          +.+++++... |+..+...  .+++|++|++|
T Consensus        46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~n  113 (187)
T cd04132          46 GKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVD----------NPTSLDNVEDKWFPEVNHF--CPGTPIMLVGL  113 (187)
T ss_pred             CcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEEe
Confidence            45688999999999999999999999999999999984          5567776654 55544332  24789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+..++-..                 .....+++.++... +              ....++++||+++.||.++|..
T Consensus       114 K~Dl~~~~~~~-----------------~~v~~~~~~~~~~~-~--------------~~~~~~e~Sa~~~~~v~~~f~~  161 (187)
T cd04132         114 KTDLRKDKNLD-----------------RKVTPAQAESVAKK-Q--------------GAFAYLECSAKTMENVEEVFDT  161 (187)
T ss_pred             ChhhhhCcccc-----------------CCcCHHHHHHHHHH-c--------------CCcEEEEccCCCCCCHHHHHHH
Confidence            99996542110                 00223344443211 0              1125789999999999999999


Q ss_pred             HHHHHHHhhh
Q 018283          343 VDETLRRRHL  352 (358)
Q Consensus       343 i~~~i~~~~~  352 (358)
                      +.+.++....
T Consensus       162 l~~~~~~~~~  171 (187)
T cd04132         162 AIEEALKKEG  171 (187)
T ss_pred             HHHHHHhhhh
Confidence            9999987643

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01862 Rab7 Rab7 subfamily

Probab=99.84  E-value=6e-20  Score=158.46  Aligned_cols=122  Identities=16%  Similarity=0.242  Sum_probs=88.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC---CCCCCCcEEE
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ---PCFEKTSFML  259 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~---~~~~~~~iil  259 (358)
                      ....+.+++||++|++.+...|..|+++++++|+|+|++          +..++.+...|+..+...   ....++|+++
T Consensus        45 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~il  114 (172)
T cd01862          45 DDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVT----------NPKSFESLDSWRDEFLIQASPSDPENFPFVV  114 (172)
T ss_pred             CCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCccCCCCceEEE
Confidence            456688999999999999999999999999999999984          344555555555544332   2234789999


Q ss_pred             EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283          260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT  339 (358)
Q Consensus       260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v  339 (358)
                      ++||+|+..++.                     ...++...+...               ...+.++++||+++.|++++
T Consensus       115 v~nK~Dl~~~~~---------------------~~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~gv~~l  158 (172)
T cd01862         115 LGNKIDLEEKRQ---------------------VSTKKAQQWCQS---------------NGNIPYFETSAKEAINVEQA  158 (172)
T ss_pred             EEECcccccccc---------------------cCHHHHHHHHHH---------------cCCceEEEEECCCCCCHHHH
Confidence            999999964211                     112332232211               11256788999999999999


Q ss_pred             HHHHHHHHHHh
Q 018283          340 FKLVDETLRRR  350 (358)
Q Consensus       340 f~~i~~~i~~~  350 (358)
                      |+++.+.+++.
T Consensus       159 ~~~i~~~~~~~  169 (172)
T cd01862         159 FETIARKALEQ  169 (172)
T ss_pred             HHHHHHHHHhc
Confidence            99999988865

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04118 Rab24 Rab24 subfamily

Probab=99.84  E-value=5.2e-20  Score=162.66  Aligned_cols=123  Identities=15%  Similarity=0.199  Sum_probs=89.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..||++++++|+|+|++          +.+++.+...|+..+.+.  ..++|++||+|
T Consensus        46 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~----------~~~s~~~~~~~~~~i~~~--~~~~piilv~n  113 (193)
T cd04118          46 GERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLT----------DSSSFERAKFWVKELQNL--EEHCKIYLCGT  113 (193)
T ss_pred             CCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHhc--CCCCCEEEEEE
Confidence            556788999999999999999999999999999999984          456666666666666443  23789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+.+..-..                 ......++.+|.. .               ..+.++++||++++||.++|++
T Consensus       114 K~Dl~~~~~~~-----------------~~v~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~gv~~l~~~  160 (193)
T cd04118         114 KSDLIEQDRSL-----------------RQVDFHDVQDFAD-E---------------IKAQHFETSSKTGQNVDELFQK  160 (193)
T ss_pred             ccccccccccc-----------------CccCHHHHHHHHH-H---------------cCCeEEEEeCCCCCCHHHHHHH
Confidence            99985421000                 0012233333311 1               1245678999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+++.
T Consensus       161 i~~~~~~~  168 (193)
T cd04118         161 VAEDFVSR  168 (193)
T ss_pred             HHHHHHHh
Confidence            99998764

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PLN03110 Rab GTPase; Provisional

Probab=99.84  E-value=4.4e-20  Score=166.56  Aligned_cols=120  Identities=14%  Similarity=0.181  Sum_probs=89.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+++||++|+++++..|..|+++++++|+|+|++          +..++.....|+..+... ...+.|+++++|
T Consensus        57 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~piiiv~n  125 (216)
T PLN03110         57 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT----------KRQTFDNVQRWLRELRDH-ADSNIVIMMAGN  125 (216)
T ss_pred             CCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECC----------ChHHHHHHHHHHHHHHHh-CCCCCeEEEEEE
Confidence            456789999999999999999999999999999999984          455666666666665443 234789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+.+.                     ...+.+..+ ..               ...+.+++|||+++.||.++|+.
T Consensus       126 K~Dl~~~~~---------------------~~~~~~~~l-~~---------------~~~~~~~e~SA~~g~~v~~lf~~  168 (216)
T PLN03110        126 KSDLNHLRS---------------------VAEEDGQAL-AE---------------KEGLSFLETSALEATNVEKAFQT  168 (216)
T ss_pred             ChhcccccC---------------------CCHHHHHHH-HH---------------HcCCEEEEEeCCCCCCHHHHHHH
Confidence            999854321                     111222222 11               12367889999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+.+.
T Consensus       169 l~~~i~~~  176 (216)
T PLN03110        169 ILLEIYHI  176 (216)
T ss_pred             HHHHHHHH
Confidence            99998764

>cd04142 RRP22 RRP22 subfamily

Probab=99.84  E-value=4.5e-20  Score=164.32  Aligned_cols=121  Identities=13%  Similarity=0.020  Sum_probs=85.9

Q ss_pred             cccceEEEEEecCCCchh----hhh----HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC--CC
Q 018283          183 KKSGEVYRLFDVGGQRNE----RRK----WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CF  252 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~----r~~----w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~--~~  252 (358)
                      +...+.+++|||+|++.+    ...    ...++++++++|+|+|+          ++..+++....|++.+.+..  ..
T Consensus        45 ~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~----------~~~~S~~~~~~~~~~i~~~~~~~~  114 (198)
T cd04142          45 SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDI----------CSPDSFHYVKLLRQQILETRPAGN  114 (198)
T ss_pred             CCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcccCC
Confidence            556688999999997643    122    34468999999999998          45677777777777776543  24


Q ss_pred             CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283          253 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD  332 (358)
Q Consensus       253 ~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d  332 (358)
                      .++|++|++||+|+...+.                     ...+++.++..+               ...+.+++|||++
T Consensus       115 ~~~piiivgNK~Dl~~~~~---------------------~~~~~~~~~~~~---------------~~~~~~~e~Sak~  158 (198)
T cd04142         115 KEPPIVVVGNKRDQQRHRF---------------------APRHVLSVLVRK---------------SWKCGYLECSAKY  158 (198)
T ss_pred             CCCCEEEEEECcccccccc---------------------ccHHHHHHHHHH---------------hcCCcEEEecCCC
Confidence            5789999999999965432                     111222222111               1235678999999


Q ss_pred             hhhHHHHHHHHHHHHHH
Q 018283          333 PKLVKKTFKLVDETLRR  349 (358)
Q Consensus       333 ~~ni~~vf~~i~~~i~~  349 (358)
                      |.||+++|+.+.+.++.
T Consensus       159 g~~v~~lf~~i~~~~~~  175 (198)
T cd04142         159 NWHILLLFKELLISATT  175 (198)
T ss_pred             CCCHHHHHHHHHHHhhc
Confidence            99999999999988874

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04135 Tc10 TC10 subfamily

Probab=99.84  E-value=2.5e-20  Score=161.56  Aligned_cols=129  Identities=16%  Similarity=0.195  Sum_probs=87.1

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+||++|++.++..|..++++++++|+|+|++          +..++++... |...+...  ..+.|+++++
T Consensus        44 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~----------~~~s~~~~~~~~~~~l~~~--~~~~piivv~  111 (174)
T cd04135          44 GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVV----------NPASFQNVKEEWVPELKEY--APNVPYLLVG  111 (174)
T ss_pred             CCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhh--CCCCCEEEEe
Confidence            445678899999999999999999999999999999983          4556655543 33333322  4578999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+..+......+.      .+.   ......+++..+.. .+              ....++++||+++.||+++|+
T Consensus       112 nK~Dl~~~~~~~~~~~------~~~---~~~v~~~~~~~~~~-~~--------------~~~~~~e~Sa~~~~gi~~~f~  167 (174)
T cd04135         112 TQIDLRDDPKTLARLN------DMK---EKPVTVEQGQKLAK-EI--------------GAHCYVECSALTQKGLKTVFD  167 (174)
T ss_pred             EchhhhcChhhHHHHh------hcc---CCCCCHHHHHHHHH-Hc--------------CCCEEEEecCCcCCCHHHHHH
Confidence            9999865421110000      000   00133445554421 11              113477899999999999999


Q ss_pred             HHHHHH
Q 018283          342 LVDETL  347 (358)
Q Consensus       342 ~i~~~i  347 (358)
                      .+.+.+
T Consensus       168 ~~~~~~  173 (174)
T cd04135         168 EAILAI  173 (174)
T ss_pred             HHHHHh
Confidence            998876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.83  E-value=3.8e-20  Score=160.42  Aligned_cols=131  Identities=18%  Similarity=0.194  Sum_probs=90.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+|||+|++.++..|..++++++++|+|+|++          +.+++++... |+..+...  .+++|++|++
T Consensus        42 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~i~~~--~~~~piilv~  109 (174)
T smart00174       42 DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD----------SPASFENVKEKWYPEVKHF--CPNTPIILVG  109 (174)
T ss_pred             CCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhh--CCCCCEEEEe
Confidence            456678999999999999999999999999999999983          5567776654 56555443  3579999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+..++.....+..      .   .......+++..+... +              ....++++||+++.||+++|+
T Consensus       110 nK~Dl~~~~~~~~~~~~------~---~~~~v~~~~~~~~~~~-~--------------~~~~~~e~Sa~~~~~v~~lf~  165 (174)
T smart00174      110 TKLDLREDKSTLRELSK------Q---KQEPVTYEQGEALAKR-I--------------GAVKYLECSALTQEGVREVFE  165 (174)
T ss_pred             cChhhhhChhhhhhhhc------c---cCCCccHHHHHHHHHH-c--------------CCcEEEEecCCCCCCHHHHHH
Confidence            99999764321111110      0   0011233444443211 0              113578899999999999999


Q ss_pred             HHHHHHHH
Q 018283          342 LVDETLRR  349 (358)
Q Consensus       342 ~i~~~i~~  349 (358)
                      .+.+.+++
T Consensus       166 ~l~~~~~~  173 (174)
T smart00174      166 EAIRAALN  173 (174)
T ss_pred             HHHHHhcC
Confidence            99988753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04155 Arl3 Arl3 subfamily

Probab=99.83  E-value=1e-19  Score=157.53  Aligned_cols=119  Identities=24%  Similarity=0.359  Sum_probs=87.1

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ...+..+.+||++|++.++..|..++++++++++|+|.+          +..++.....++..+.......++|+++++|
T Consensus        54 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  123 (173)
T cd04155          54 QSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSA----------DKKRLEEAGAELVELLEEEKLAGVPVLVFAN  123 (173)
T ss_pred             EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCC----------CHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence            344678999999999999999999999999999999984          3456666777777776654445799999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.++.                       ..++..+.    + .+      .....+.+.++.+||++++|++++|++
T Consensus       124 K~D~~~~~-----------------------~~~~i~~~----l-~~------~~~~~~~~~~~~~Sa~~~~gi~~~~~~  169 (173)
T cd04155         124 KQDLATAA-----------------------PAEEIAEA----L-NL------HDLRDRTWHIQACSAKTGEGLQEGMNW  169 (173)
T ss_pred             CCCCccCC-----------------------CHHHHHHH----c-CC------cccCCCeEEEEEeECCCCCCHHHHHHH
Confidence            99985421                       11111111    1 00      001235567788999999999999999


Q ss_pred             HHH
Q 018283          343 VDE  345 (358)
Q Consensus       343 i~~  345 (358)
                      +++
T Consensus       170 l~~  172 (173)
T cd04155         170 VCK  172 (173)
T ss_pred             Hhc
Confidence            865

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PLN03118 Rab family protein; Provisional

Probab=99.83  E-value=1.8e-19  Score=161.81  Aligned_cols=121  Identities=12%  Similarity=0.146  Sum_probs=88.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC-CCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~-~~~~~~~iilv~  261 (358)
                      +...+.+.+|||+|++.++.+|..|+++++++|+|+|++          +.+++.+...+|...+.. ....+.|++||+
T Consensus        58 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~----------~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~  127 (211)
T PLN03118         58 GGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVT----------RRETFTNLSDVWGKEVELYSTNQDCVKMLVG  127 (211)
T ss_pred             CCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            455688999999999999999999999999999999984          456666665545443332 223467999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+..++.                     ...+++..+..                ...+.++++||+++.|++++|+
T Consensus       128 NK~Dl~~~~~---------------------i~~~~~~~~~~----------------~~~~~~~e~SAk~~~~v~~l~~  170 (211)
T PLN03118        128 NKVDRESERD---------------------VSREEGMALAK----------------EHGCLFLECSAKTRENVEQCFE  170 (211)
T ss_pred             ECccccccCc---------------------cCHHHHHHHHH----------------HcCCEEEEEeCCCCCCHHHHHH
Confidence            9999864321                     11222322211                1225678999999999999999


Q ss_pred             HHHHHHHHh
Q 018283          342 LVDETLRRR  350 (358)
Q Consensus       342 ~i~~~i~~~  350 (358)
                      ++.+.+...
T Consensus       171 ~l~~~~~~~  179 (211)
T PLN03118        171 ELALKIMEV  179 (211)
T ss_pred             HHHHHHHhh
Confidence            999998654

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.83  E-value=9.1e-20  Score=156.37  Aligned_cols=115  Identities=19%  Similarity=0.213  Sum_probs=84.6

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ...+.+.+||++|++.++.+|..++++++++|||+|++          +.+++.+...|+..+....  .++|+++++||
T Consensus        49 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK  116 (164)
T cd04101          49 DNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVS----------NKASFENCSRWVNKVRTAS--KHMPGVLVGNK  116 (164)
T ss_pred             CCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhC--CCCCEEEEEEC
Confidence            45689999999999999999999999999999999984          4455665566666654432  46899999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      .|+..+.-                     ....++..+ ...               ..+.++++||+++.|+.++|+.+
T Consensus       117 ~Dl~~~~~---------------------~~~~~~~~~-~~~---------------~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101         117 MDLADKAE---------------------VTDAQAQAF-AQA---------------NQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             cccccccC---------------------CCHHHHHHH-HHH---------------cCCeEEEEeCCCCCChHHHHHHH
Confidence            99854311                     111222222 111               12457889999999999999998


Q ss_pred             HHHH
Q 018283          344 DETL  347 (358)
Q Consensus       344 ~~~i  347 (358)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8765

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.83  E-value=1.4e-21  Score=157.00  Aligned_cols=122  Identities=17%  Similarity=0.208  Sum_probs=96.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+++++|||+||++||+....||+++++.++++|+          .++.+++....|+.++-.- .-..+.+.|++|
T Consensus        43 ~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi----------ankasfdn~~~wlsei~ey-~k~~v~l~llgn  111 (192)
T KOG0083|consen   43 DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI----------ANKASFDNCQAWLSEIHEY-AKEAVALMLLGN  111 (192)
T ss_pred             CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec----------ccchhHHHHHHHHHHHHHH-HHhhHhHhhhcc
Confidence            67889999999999999999999999999999999998          5777888888888777432 223578899999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++....                . ++..-|..|                    .+.+.+|||++|-||+.+|..
T Consensus       112 k~d~a~er~v~~----------------d-dg~kla~~y--------------------~ipfmetsaktg~nvd~af~~  154 (192)
T KOG0083|consen  112 KCDLAHERAVKR----------------D-DGEKLAEAY--------------------GIPFMETSAKTGFNVDLAFLA  154 (192)
T ss_pred             ccccchhhcccc----------------c-hHHHHHHHH--------------------CCCceeccccccccHhHHHHH
Confidence            999977765320                1 222222222                    367899999999999999999


Q ss_pred             HHHHHHHhhh
Q 018283          343 VDETLRRRHL  352 (358)
Q Consensus       343 i~~~i~~~~~  352 (358)
                      |.+.+++..+
T Consensus       155 ia~~l~k~~~  164 (192)
T KOG0083|consen  155 IAEELKKLKM  164 (192)
T ss_pred             HHHHHHHhcc
Confidence            9999987543

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.83  E-value=1.1e-19  Score=155.53  Aligned_cols=119  Identities=16%  Similarity=0.227  Sum_probs=89.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.+...+..++++++++|+|+|++          +.+++.....|+..+.... .+++|+++++|
T Consensus        45 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~l~~~~~~~-~~~~pivvv~n  113 (164)
T smart00175       45 DGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDIT----------NRESFENLKNWLKELREYA-DPNVVIMLVGN  113 (164)
T ss_pred             CCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEE
Confidence            455578999999999999999999999999999999983          4566666666666654432 24799999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+...+.                     .+.+.+.++.. +               ..+.++++||+++.|+.++|+.
T Consensus       114 K~D~~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~e~Sa~~~~~i~~l~~~  156 (164)
T smart00175      114 KSDLEDQRQ---------------------VSREEAEAFAE-E---------------HGLPFFETSAKTNTNVEEAFEE  156 (164)
T ss_pred             chhcccccC---------------------CCHHHHHHHHH-H---------------cCCeEEEEeCCCCCCHHHHHHH
Confidence            999754210                     22344444321 1               1245789999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.+.+
T Consensus       157 i~~~~~~  163 (164)
T smart00175      157 LAREILK  163 (164)
T ss_pred             HHHHHhh
Confidence            9988764

Rab GTPases are implicated in vesicle trafficking.

>cd01863 Rab18 Rab18 subfamily

Probab=99.83  E-value=1.1e-19  Score=155.36  Aligned_cols=116  Identities=16%  Similarity=0.209  Sum_probs=88.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.+...|..++++++++|+|+|++          +.+++.....|+..+.......++|+++++|
T Consensus        45 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~n  114 (161)
T cd01863          45 DGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVT----------RRDTFTNLETWLNELETYSTNNDIVKMLVGN  114 (161)
T ss_pred             CCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECC----------CHHHHHhHHHHHHHHHHhCCCCCCcEEEEEE
Confidence            455688999999999999999999999999999999984          4556666666777665554456799999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+....                      ...+++..+..                ...+.++++||++++|++++|+.
T Consensus       115 K~D~~~~~----------------------~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~~~~~  156 (161)
T cd01863         115 KIDKENRE----------------------VTREEGLKFAR----------------KHNMLFIETSAKTRDGVQQAFEE  156 (161)
T ss_pred             CCcccccc----------------------cCHHHHHHHHH----------------HcCCEEEEEecCCCCCHHHHHHH
Confidence            99996221                      12233333321                12366889999999999999998


Q ss_pred             HHHH
Q 018283          343 VDET  346 (358)
Q Consensus       343 i~~~  346 (358)
                      +.+.
T Consensus       157 ~~~~  160 (161)
T cd01863         157 LVEK  160 (161)
T ss_pred             HHHh
Confidence            8764

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04123 Rab21 Rab21 subfamily

Probab=99.83  E-value=1e-19  Score=155.03  Aligned_cols=117  Identities=16%  Similarity=0.177  Sum_probs=84.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++|++.+...|..++++++++|+|+|++          +.+++.....|+..+.... ..+.|+++++|
T Consensus        45 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piiiv~n  113 (162)
T cd04123          45 GGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDIT----------DADSFQKVKKWIKELKQMR-GNNISLVIVGN  113 (162)
T ss_pred             CCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEE
Confidence            345578999999999999999999999999999999984          4455655556665554322 22689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+...+-                     ...++..++. .               ...+.++++||+++.|+.++|++
T Consensus       114 K~D~~~~~~---------------------~~~~~~~~~~-~---------------~~~~~~~~~s~~~~~gi~~~~~~  156 (162)
T cd04123         114 KIDLERQRV---------------------VSKSEAEEYA-K---------------SVGAKHFETSAKTGKGIEELFLS  156 (162)
T ss_pred             CcccccccC---------------------CCHHHHHHHH-H---------------HcCCEEEEEeCCCCCCHHHHHHH
Confidence            999864321                     1112222221 1               11245678999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      +.+.+
T Consensus       157 l~~~~  161 (162)
T cd04123         157 LAKRM  161 (162)
T ss_pred             HHHHh
Confidence            98765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.83  E-value=1.4e-19  Score=153.13  Aligned_cols=130  Identities=18%  Similarity=0.331  Sum_probs=92.8

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|+....+      ....+.+.+||++|++.++..|..|+++++++++|+|++          +...+.....++..
T Consensus        29 ~~t~~~~~~~~------~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~   92 (159)
T cd04159          29 IPTVGFNMRKV------TKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA----------DRTALEAAKNELHD   92 (159)
T ss_pred             cCCCCcceEEE------EECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence            35566555444      445689999999999999999999999999999999984          34456666677777


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +.......+.|+++++||+|+..+.                       ...+....+..  ..      .   ..+.+.+
T Consensus        93 ~~~~~~~~~~p~iiv~nK~D~~~~~-----------------------~~~~~~~~~~~--~~------~---~~~~~~~  138 (159)
T cd04159          93 LLEKPSLEGIPLLVLGNKNDLPGAL-----------------------SVDELIEQMNL--KS------I---TDREVSC  138 (159)
T ss_pred             HHcChhhcCCCEEEEEeCccccCCc-----------------------CHHHHHHHhCc--cc------c---cCCceEE
Confidence            7665555688999999999985421                       11111111100  00      0   1234678


Q ss_pred             EEeeccChhhHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~  345 (358)
                      +.+||+++.|+.++|+++.+
T Consensus       139 ~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         139 YSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             EEEEeccCCChHHHHHHHhh
Confidence            89999999999999998864

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.83  E-value=1.7e-19  Score=155.21  Aligned_cols=119  Identities=13%  Similarity=0.175  Sum_probs=84.0

Q ss_pred             cccceEEEEEecCCCch-hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC-CCCCcEEEE
Q 018283          183 KKSGEVYRLFDVGGQRN-ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC-FEKTSFMLF  260 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~-~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~-~~~~~iilv  260 (358)
                      +.+.+.+++||++|++. +...+..++++++++|+|+|++          +..++.....|+..+..... ..+.|+++|
T Consensus        43 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~piilv  112 (165)
T cd04146          43 DGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSIT----------DRSSFDEISQLKQLIREIKKRDREIPVILV  112 (165)
T ss_pred             CCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            55678899999999996 3566888999999999999984          44566655555555433221 347899999


Q ss_pred             eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh-hhHHHH
Q 018283          261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP-KLVKKT  339 (358)
Q Consensus       261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~-~ni~~v  339 (358)
                      +||+|+.+.+.                     ...+++..+.. .               ..+.++++||+++ .||+++
T Consensus       113 ~nK~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~e~Sa~~~~~~v~~~  155 (165)
T cd04146         113 GNKADLLHYRQ---------------------VSTEEGEKLAS-E---------------LGCLFFEVSAAEDYDGVHSV  155 (165)
T ss_pred             EECCchHHhCc---------------------cCHHHHHHHHH-H---------------cCCEEEEeCCCCCchhHHHH
Confidence            99999864321                     12233333311 1               1245788999999 599999


Q ss_pred             HHHHHHHHH
Q 018283          340 FKLVDETLR  348 (358)
Q Consensus       340 f~~i~~~i~  348 (358)
                      |..+++.+.
T Consensus       156 f~~l~~~~~  164 (165)
T cd04146         156 FHELCREVR  164 (165)
T ss_pred             HHHHHHHHh
Confidence            999988664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01861 Rab6 Rab6 subfamily

Probab=99.82  E-value=1.4e-19  Score=154.64  Aligned_cols=116  Identities=19%  Similarity=0.175  Sum_probs=86.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+++||++|++.++..|..++++++++|+|+|+          ++.+++.+...|+..+.... ..+.|+++++|
T Consensus        45 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~n  113 (161)
T cd01861          45 EDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDI----------TNRQSFDNTDKWIDDVRDER-GNDVIIVLVGN  113 (161)
T ss_pred             CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEE
Confidence            44557899999999999999999999999999999998          35567777777777765432 23689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+.+.+.                     ...++...+..                ...+.++++||+++.|++++|.+
T Consensus       114 K~D~~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~~v~~l~~~  156 (161)
T cd01861         114 KTDLSDKRQ---------------------VSTEEGEKKAK----------------ELNAMFIETSAKAGHNVKELFRK  156 (161)
T ss_pred             ChhccccCc---------------------cCHHHHHHHHH----------------HhCCEEEEEeCCCCCCHHHHHHH
Confidence            999853211                     11222222211                11256788999999999999999


Q ss_pred             HHHH
Q 018283          343 VDET  346 (358)
Q Consensus       343 i~~~  346 (358)
                      +.+.
T Consensus       157 i~~~  160 (161)
T cd01861         157 IASA  160 (161)
T ss_pred             HHHh
Confidence            9874

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.82  E-value=1.2e-19  Score=157.55  Aligned_cols=126  Identities=14%  Similarity=0.159  Sum_probs=85.1

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+++||++|++.++..|..|+++++++|||+|+          ++..++.... .|+..+...  ..+.|+++++
T Consensus        44 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~----------~~~~sf~~~~~~~~~~~~~~--~~~~piilv~  111 (173)
T cd04130          44 DGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSV----------VNPSSFQNISEKWIPEIRKH--NPKAPIILVG  111 (173)
T ss_pred             CCEEEEEEEEECCCChhhccccccccCCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEe
Confidence            45568899999999999999999999999999999998          4556676654 355555432  2468999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||.|+..+.-....+      ..+   ..-....+++..|..+               .....++++||+++.||+++|+
T Consensus       112 nK~Dl~~~~~~~~~~------~~~---~~~~v~~~~~~~~a~~---------------~~~~~~~e~Sa~~~~~v~~lf~  167 (173)
T cd04130         112 TQADLRTDVNVLIQL------ARY---GEKPVSQSRAKALAEK---------------IGACEYIECSALTQKNLKEVFD  167 (173)
T ss_pred             eChhhccChhHHHHH------hhc---CCCCcCHHHHHHHHHH---------------hCCCeEEEEeCCCCCCHHHHHH
Confidence            999986431100000      000   0001334555554221               0113678999999999999998


Q ss_pred             HHH
Q 018283          342 LVD  344 (358)
Q Consensus       342 ~i~  344 (358)
                      .+.
T Consensus       168 ~~~  170 (173)
T cd04130         168 TAI  170 (173)
T ss_pred             HHH
Confidence            764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.82  E-value=2.3e-19  Score=159.53  Aligned_cols=121  Identities=17%  Similarity=0.105  Sum_probs=88.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+++||++|+..++..|..|+++++++|||+|++          +..++.+...|+..+.......++|++|++|
T Consensus        43 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~N  112 (198)
T cd04147          43 GGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVD----------DPESFEEVERLREEILEVKEDKFVPIVVVGN  112 (198)
T ss_pred             CCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence            445578999999999999999999999999999999984          4556667777777776644445799999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+....-   .                 .....+.+....               ...+.++++||+++.||.++|++
T Consensus       113 K~Dl~~~~~---~-----------------v~~~~~~~~~~~---------------~~~~~~~~~Sa~~g~gv~~l~~~  157 (198)
T cd04147         113 KADSLEEER---Q-----------------VPAKDALSTVEL---------------DWNCGFVETSAKDNENVLEVFKE  157 (198)
T ss_pred             ccccccccc---c-----------------ccHHHHHHHHHh---------------hcCCcEEEecCCCCCCHHHHHHH
Confidence            999864210   0                 111222221110               01134678999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +.+.+.
T Consensus       158 l~~~~~  163 (198)
T cd04147         158 LLRQAN  163 (198)
T ss_pred             HHHHhh
Confidence            998764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01893 Miro1 Miro1 subfamily

Probab=99.82  E-value=4.2e-19  Score=153.16  Aligned_cols=122  Identities=11%  Similarity=0.135  Sum_probs=86.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~  261 (358)
                      ....+.+.+||++|++.++..|..++.+++++|+|+|++          +..++..... |+..+....  .+.|+++++
T Consensus        43 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~----------~~~s~~~~~~~~~~~i~~~~--~~~pviiv~  110 (166)
T cd01893          43 TPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVD----------RPSTLERIRTKWLPLIRRLG--VKVPIILVG  110 (166)
T ss_pred             cCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhC--CCCCEEEEE
Confidence            456689999999999999999999999999999999983          4455655433 333332221  378999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+.+.+..                    ...++...++.+.|..             ...+++|||+++.|++++|+
T Consensus       111 nK~Dl~~~~~~--------------------~~~~~~~~~~~~~~~~-------------~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893         111 NKSDLRDGSSQ--------------------AGLEEEMLPIMNEFRE-------------IETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             Echhcccccch--------------------hHHHHHHHHHHHHHhc-------------ccEEEEeccccccCHHHHHH
Confidence            99999654210                    0122333344444421             12467899999999999999


Q ss_pred             HHHHHHHH
Q 018283          342 LVDETLRR  349 (358)
Q Consensus       342 ~i~~~i~~  349 (358)
                      .+.+.+++
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.82  E-value=4.8e-19  Score=151.35  Aligned_cols=120  Identities=17%  Similarity=0.191  Sum_probs=89.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.+...+..++++++++++|+|++          +..++.....++..+.......+.|+++++|
T Consensus        44 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piiiv~N  113 (164)
T cd04139          44 DGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSIT----------DMESFTATAEFREQILRVKDDDNVPLLLVGN  113 (164)
T ss_pred             CCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            556788999999999999999999999999999999983          4456666666776666543345799999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ....+..++.. .               ..+.++++||++++|+.++|++
T Consensus       114 K~D~~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~gi~~l~~~  156 (164)
T cd04139         114 KCDLEDKRQ---------------------VSSEEAANLAR-Q---------------WGVPYVETSAKTRQNVEKAFYD  156 (164)
T ss_pred             ccccccccc---------------------cCHHHHHHHHH-H---------------hCCeEEEeeCCCCCCHHHHHHH
Confidence            999865211                     11222222211 1               1245789999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.+.+
T Consensus       157 l~~~~~~  163 (164)
T cd04139         157 LVREIRQ  163 (164)
T ss_pred             HHHHHHh
Confidence            9887753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.81  E-value=2.8e-19  Score=155.07  Aligned_cols=129  Identities=16%  Similarity=0.206  Sum_probs=84.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~  261 (358)
                      +.+.+.+.+|||+|++.++..|..++++++++++|+|++          +.+++..... |...+..  ...+.|+++++
T Consensus        45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~----------~~~s~~~~~~~~~~~~~~--~~~~~piilv~  112 (175)
T cd01870          45 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKH--FCPNVPIILVG  112 (175)
T ss_pred             CCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh--hCCCCCEEEEe
Confidence            556788999999999999999999999999999999984          3445555443 3333332  23478999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||.|+.........+...   .+.      .....++.++... +              ....++++||+++.||+++|+
T Consensus       113 nK~Dl~~~~~~~~~i~~~---~~~------~v~~~~~~~~~~~-~--------------~~~~~~~~Sa~~~~~v~~lf~  168 (175)
T cd01870         113 NKKDLRNDEHTRRELAKM---KQE------PVKPEEGRDMANK-I--------------GAFGYMECSAKTKEGVREVFE  168 (175)
T ss_pred             eChhcccChhhhhhhhhc---cCC------CccHHHHHHHHHH-c--------------CCcEEEEeccccCcCHHHHHH
Confidence            999986432110000000   000      0122333333111 0              124678899999999999999


Q ss_pred             HHHHHH
Q 018283          342 LVDETL  347 (358)
Q Consensus       342 ~i~~~i  347 (358)
                      ++.+..
T Consensus       169 ~l~~~~  174 (175)
T cd01870         169 MATRAA  174 (175)
T ss_pred             HHHHHh
Confidence            988653

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04148 RGK RGK subfamily

Probab=99.80  E-value=6.5e-19  Score=159.52  Aligned_cols=117  Identities=13%  Similarity=0.062  Sum_probs=84.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhc-CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFE-GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~-~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+||++|++  ......|++ +++++|+|+|++          +..++....+|+..+.......++|++||+
T Consensus        46 ~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~t----------d~~S~~~~~~~~~~l~~~~~~~~~piilV~  113 (221)
T cd04148          46 DGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVT----------DRSSFERASELRIQLRRNRQLEDRPIILVG  113 (221)
T ss_pred             CCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            5567889999999998  233345666 999999999984          456677677777766554434579999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+.+++.                     ...+++.++ ...               ..+.+++|||+++.||+++|+
T Consensus       114 NK~Dl~~~~~---------------------v~~~~~~~~-a~~---------------~~~~~~e~SA~~~~gv~~l~~  156 (221)
T cd04148         114 NKSDLARSRE---------------------VSVQEGRAC-AVV---------------FDCKFIETSAGLQHNVDELLE  156 (221)
T ss_pred             EChhccccce---------------------ecHHHHHHH-HHH---------------cCCeEEEecCCCCCCHHHHHH
Confidence            9999864321                     112333322 111               124578899999999999999


Q ss_pred             HHHHHHH
Q 018283          342 LVDETLR  348 (358)
Q Consensus       342 ~i~~~i~  348 (358)
                      ++.+.+.
T Consensus       157 ~l~~~~~  163 (221)
T cd04148         157 GIVRQIR  163 (221)
T ss_pred             HHHHHHH
Confidence            9999886

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04129 Rho2 Rho2 subfamily

Probab=99.79  E-value=1.4e-18  Score=153.15  Aligned_cols=134  Identities=15%  Similarity=0.146  Sum_probs=89.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+||++|++.++..+..++++++++|+|+|++          +.+++.+... |+..+...  .+++|++||+
T Consensus        45 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~----------~~~s~~~~~~~~~~~i~~~--~~~~piilvg  112 (187)
T cd04129          45 DGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVD----------TPDSLENVRTKWIEEVRRY--CPNVPVILVG  112 (187)
T ss_pred             CCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEe
Confidence            445678999999999999888888899999999999983          4456666553 55555432  2469999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||.|+..+.........    ..+       ...+++..+. +.+              ....+++|||+++.||+++|+
T Consensus       113 nK~Dl~~~~~~~~~~~~----~~~-------~~~~~~~~~~-~~~--------------~~~~~~e~Sa~~~~~v~~~f~  166 (187)
T cd04129         113 LKKDLRQDAVAKEEYRT----QRF-------VPIQQGKRVA-KEI--------------GAKKYMECSALTGEGVDDVFE  166 (187)
T ss_pred             eChhhhhCccccccccc----CCc-------CCHHHHHHHH-HHh--------------CCcEEEEccCCCCCCHHHHHH
Confidence            99998543211000000    000       2334443331 111              123578999999999999999


Q ss_pred             HHHHHHHHhhhhh
Q 018283          342 LVDETLRRRHLFE  354 (358)
Q Consensus       342 ~i~~~i~~~~~~~  354 (358)
                      ++.+.++....++
T Consensus       167 ~l~~~~~~~~~~~  179 (187)
T cd04129         167 AATRAALLVRKSE  179 (187)
T ss_pred             HHHHHHhcccCcc
Confidence            9999887554443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04114 Rab30 Rab30 subfamily

Probab=99.79  E-value=1.1e-18  Score=150.28  Aligned_cols=117  Identities=19%  Similarity=0.193  Sum_probs=82.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++|++.++..|..|++.++++|+|+|++          +.+++.....|+..+... ...+.|+++++|
T Consensus        52 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~N  120 (169)
T cd04114          52 KGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDIT----------CEESFRCLPEWLREIEQY-ANNKVITILVGN  120 (169)
T ss_pred             CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh-CCCCCeEEEEEE
Confidence            455678999999999999999999999999999999984          334454444444443221 123689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+...+-                     ....     +.+.|...           ....++++||+++.|++++|++
T Consensus       121 K~D~~~~~~---------------------i~~~-----~~~~~~~~-----------~~~~~~~~Sa~~~~gv~~l~~~  163 (169)
T cd04114         121 KIDLAERRE---------------------VSQQ-----RAEEFSDA-----------QDMYYLETSAKESDNVEKLFLD  163 (169)
T ss_pred             Ccccccccc---------------------cCHH-----HHHHHHHH-----------cCCeEEEeeCCCCCCHHHHHHH
Confidence            999854221                     0011     11122221           1256789999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      +.+.+
T Consensus       164 i~~~~  168 (169)
T cd04114         164 LACRL  168 (169)
T ss_pred             HHHHh
Confidence            98765

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.79  E-value=3.7e-18  Score=148.94  Aligned_cols=122  Identities=17%  Similarity=0.208  Sum_probs=92.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++|++.++..|..++.+++++|+|+|++          +..++.....++..+++.....+.|+++++|
T Consensus        45 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~N  114 (180)
T cd04137          45 KGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVT----------SRKSFEVVKVIYDKILDMLGKESVPIVLVGN  114 (180)
T ss_pred             CCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            344577899999999999999999999999999999984          5677788888888887755445789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+...+.                     ....+...+ ...               ..+.++.+||++++++.++|.+
T Consensus       115 K~Dl~~~~~---------------------~~~~~~~~~-~~~---------------~~~~~~~~Sa~~~~gv~~l~~~  157 (180)
T cd04137         115 KSDLHTQRQ---------------------VSTEEGKEL-AES---------------WGAAFLESSARENENVEEAFEL  157 (180)
T ss_pred             chhhhhcCc---------------------cCHHHHHHH-HHH---------------cCCeEEEEeCCCCCCHHHHHHH
Confidence            999864211                     111111111 111               1145788999999999999999


Q ss_pred             HHHHHHHhh
Q 018283          343 VDETLRRRH  351 (358)
Q Consensus       343 i~~~i~~~~  351 (358)
                      +.+.+....
T Consensus       158 l~~~~~~~~  166 (180)
T cd04137         158 LIEEIEKVE  166 (180)
T ss_pred             HHHHHHHhc
Confidence            999887553

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.78  E-value=7.9e-19  Score=156.54  Aligned_cols=77  Identities=14%  Similarity=0.240  Sum_probs=63.4

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC-------------
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-------------  250 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~-------------  250 (358)
                      .+.+.+++||++|++.++..+..||++++++|+|+|++          +..+++....|+..+.+..             
T Consensus        51 ~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvt----------n~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~  120 (202)
T cd04102          51 EKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLT----------NRKSSQNLQRWSLEALNKDTFPTGLLVTNGDY  120 (202)
T ss_pred             CcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECc----------ChHHHHHHHHHHHHHHHhhccccccccccccc
Confidence            45689999999999999999999999999999999994          5677777777777765421             


Q ss_pred             -----CCCCCcEEEEeeCCCchhhh
Q 018283          251 -----CFEKTSFMLFLNKFDIFEKK  270 (358)
Q Consensus       251 -----~~~~~~iilv~NK~Dl~~ek  270 (358)
                           ...++|++|||||.|+.+++
T Consensus       121 ~~~~~~~~~~PiilVGnK~Dl~~~r  145 (202)
T cd04102         121 DSEQFGGNQIPLLVIGTKLDQIPEK  145 (202)
T ss_pred             cccccCCCCceEEEEEECccchhhc
Confidence                 12468999999999997764

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.78  E-value=1.2e-18  Score=154.44  Aligned_cols=120  Identities=15%  Similarity=0.134  Sum_probs=101.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +.+.+.+.|+||+||+.+...-..|.+++++++.|+|+          +++.+|++...+++.+...+....+|++||||
T Consensus        47 ~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysi----------td~~SF~~~~~l~~~I~r~~~~~~~PivlVGN  116 (196)
T KOG0395|consen   47 DGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSI----------TDRSSFEEAKQLREQILRVKGRDDVPIILVGN  116 (196)
T ss_pred             CCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEE
Confidence            67788999999999999999999999999999999998          68899999999999997777777899999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+||...|.                     ...+++.++ .   .            ...+.+++|||+...||.++|..
T Consensus       117 K~Dl~~~R~---------------------V~~eeg~~l-a---~------------~~~~~f~E~Sak~~~~v~~~F~~  159 (196)
T KOG0395|consen  117 KCDLERERQ---------------------VSEEEGKAL-A---R------------SWGCAFIETSAKLNYNVDEVFYE  159 (196)
T ss_pred             cccchhccc---------------------cCHHHHHHH-H---H------------hcCCcEEEeeccCCcCHHHHHHH
Confidence            999987643                     334554444 1   0            12355889999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +...+..
T Consensus       160 L~r~~~~  166 (196)
T KOG0395|consen  160 LVREIRL  166 (196)
T ss_pred             HHHHHHh
Confidence            9998865

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.78  E-value=3.7e-18  Score=153.71  Aligned_cols=116  Identities=14%  Similarity=0.196  Sum_probs=87.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +.+.+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+...  ..+.|+++++|
T Consensus        54 ~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~--~~~~~i~lv~n  121 (215)
T PTZ00132         54 NCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVT----------SRITYKNVPNWHRDIVRV--CENIPIVLVGN  121 (215)
T ss_pred             CCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence            456789999999999999999999999999999999984          556666666676666432  25789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+...                      . .+...+     ..           ...+.++++||+++.|++++|.+
T Consensus       122 K~Dl~~~~~----------------------~-~~~~~~-----~~-----------~~~~~~~e~Sa~~~~~v~~~f~~  162 (215)
T PTZ00132        122 KVDVKDRQV----------------------K-ARQITF-----HR-----------KKNLQYYDISAKSNYNFEKPFLW  162 (215)
T ss_pred             CccCccccC----------------------C-HHHHHH-----HH-----------HcCCEEEEEeCCCCCCHHHHHHH
Confidence            999853211                      0 111121     11           12356789999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +++.++.
T Consensus       163 ia~~l~~  169 (215)
T PTZ00132        163 LARRLTN  169 (215)
T ss_pred             HHHHHhh
Confidence            9988864

>cd00154 Rab Rab family

Probab=99.78  E-value=3.9e-18  Score=144.00  Aligned_cols=114  Identities=18%  Similarity=0.258  Sum_probs=84.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..++++++++|+|+|.+          +.+.+.....|+..+.... ..+.|+++++|
T Consensus        45 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~n  113 (159)
T cd00154          45 DGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDIT----------NRESFENLDKWLKELKEYA-PENIPIILVGN  113 (159)
T ss_pred             CCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCCcEEEEEE
Confidence            345688999999999999999999999999999999984          3455666666666665532 24689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+...+.                     ...++..++...                ..+.++++||+++.++.++|++
T Consensus       114 K~D~~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~sa~~~~~i~~~~~~  156 (159)
T cd00154         114 KIDLEDQRQ---------------------VSTEEAQQFAKE----------------NGLLFFETSAKTGENVEELFQS  156 (159)
T ss_pred             ccccccccc---------------------ccHHHHHHHHHH----------------cCCeEEEEecCCCCCHHHHHHH
Confidence            999862110                     122333333221                1356889999999999999998


Q ss_pred             HH
Q 018283          343 VD  344 (358)
Q Consensus       343 i~  344 (358)
                      +.
T Consensus       157 i~  158 (159)
T cd00154         157 LA  158 (159)
T ss_pred             Hh
Confidence            75

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd00876 Ras Ras family

Probab=99.78  E-value=4.1e-18  Score=144.79  Aligned_cols=118  Identities=18%  Similarity=0.175  Sum_probs=88.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+++||++|+..+...+..++++++++|+|+|++          +..++.+...++..+.+......+|+++++|
T Consensus        43 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n  112 (160)
T cd00876          43 DGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSIT----------DRESFEEIKGYREQILRVKDDEDIPIVLVGN  112 (160)
T ss_pred             CCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence            334678999999999999999999999999999999973          4566777777777776643335789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+...+.                     ...+++..+...                ..+.++.+||+++.|++++|++
T Consensus       113 K~D~~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~S~~~~~~i~~l~~~  155 (160)
T cd00876         113 KCDLENERQ---------------------VSKEEGKALAKE----------------WGCPFIETSAKDNINIDEVFKL  155 (160)
T ss_pred             CCcccccce---------------------ecHHHHHHHHHH----------------cCCcEEEeccCCCCCHHHHHHH
Confidence            999865211                     122333333221                1145788999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      +.+.|
T Consensus       156 l~~~i  160 (160)
T cd00876         156 LVREI  160 (160)
T ss_pred             HHhhC
Confidence            98753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PLN00023 GTP-binding protein; Provisional

Probab=99.77  E-value=1.2e-18  Score=163.64  Aligned_cols=75  Identities=20%  Similarity=0.219  Sum_probs=60.7

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC-----------CCC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-----------CFE  253 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~-----------~~~  253 (358)
                      +.+.++||||+||++|+.+|..||++++++|+|+|++          +..++.....|++.+....           ...
T Consensus        81 k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDIT----------dr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~  150 (334)
T PLN00023         81 RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLS----------QRRTKTSLQKWASEVAATGTFSAPLGSGGPGGL  150 (334)
T ss_pred             ceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence            5688999999999999999999999999999999995          4556666666776665431           123


Q ss_pred             CCcEEEEeeCCCchhh
Q 018283          254 KTSFMLFLNKFDIFEK  269 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~e  269 (358)
                      ++|++||+||+||..+
T Consensus       151 ~ipIILVGNK~DL~~~  166 (334)
T PLN00023        151 PVPYIVIGNKADIAPK  166 (334)
T ss_pred             CCcEEEEEECcccccc
Confidence            5899999999999653

>cd00157 Rho Rho (Ras homology) family

Probab=99.76  E-value=7.9e-18  Score=145.07  Aligned_cols=126  Identities=14%  Similarity=0.145  Sum_probs=84.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHH-HHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKEL-FDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~-~~~i~~~~~~~~~~iilv~  261 (358)
                      ....+.+++||++|++.+...+..+++.++++++|+|.+          +..++.+.... +..+...  ..+.|+++++
T Consensus        44 ~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~  111 (171)
T cd00157          44 DGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVD----------SPSSFENVKTKWIPEIRHY--CPNVPIILVG  111 (171)
T ss_pred             CCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhh--CCCCCEEEEE
Confidence            456678999999999999888899999999999999974          44555555443 3333322  2379999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||.|+.+..-....+       .+.   ......+++.++...               .....++++||++++|+.++|+
T Consensus       112 nK~Dl~~~~~~~~~~-------~~~---~~~v~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~gi~~l~~  166 (171)
T cd00157         112 TKIDLRDDENTLKKL-------EKG---KEPITPEEGEKLAKE---------------IGAIGYMECSALTQEGVKEVFE  166 (171)
T ss_pred             ccHHhhhchhhhhhc-------ccC---CCccCHHHHHHHHHH---------------hCCeEEEEeecCCCCCHHHHHH
Confidence            999997643211000       000   011233444443221               1123688999999999999999


Q ss_pred             HHHH
Q 018283          342 LVDE  345 (358)
Q Consensus       342 ~i~~  345 (358)
                      .+.+
T Consensus       167 ~i~~  170 (171)
T cd00157         167 EAIR  170 (171)
T ss_pred             HHhh
Confidence            8865

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PTZ00099 rab6; Provisional

Probab=99.75  E-value=2.1e-17  Score=144.34  Aligned_cols=130  Identities=18%  Similarity=0.159  Sum_probs=98.7

Q ss_pred             eccCceee----EeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH
Q 018283          166 VRTTGVVE----IQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE  241 (358)
Q Consensus       166 ~~T~gi~e----~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~  241 (358)
                      .||.|+..    +.+      +.+.+.+.||||+||++++.+|..||++++++|+|+|+          ++..++.....
T Consensus        10 ~~Tig~~~~~~~~~~------~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~----------t~~~sf~~~~~   73 (176)
T PTZ00099         10 QSTIGIDFLSKTLYL------DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI----------TNRQSFENTTK   73 (176)
T ss_pred             CCccceEEEEEEEEE------CCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEEC----------CCHHHHHHHHH
Confidence            46777544    334      56779999999999999999999999999999999998          45667878778


Q ss_pred             HHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCc
Q 018283          242 LFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDR  321 (358)
Q Consensus       242 ~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~  321 (358)
                      |+..+.... ..++|++||+||+||.+.+.                     ...+++..+..                ..
T Consensus        74 w~~~i~~~~-~~~~piilVgNK~DL~~~~~---------------------v~~~e~~~~~~----------------~~  115 (176)
T PTZ00099         74 WIQDILNER-GKDVIIALVGNKTDLGDLRK---------------------VTYEEGMQKAQ----------------EY  115 (176)
T ss_pred             HHHHHHHhc-CCCCeEEEEEECcccccccC---------------------CCHHHHHHHHH----------------Hc
Confidence            888776543 25789999999999964321                     22344443311                11


Q ss_pred             eEEEEEeeccChhhHHHHHHHHHHHHHH
Q 018283          322 VFKIYRTTALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       322 ~~~~~~tSA~d~~ni~~vf~~i~~~i~~  349 (358)
                      .+.+++|||++++||.++|+++.+.+.+
T Consensus       116 ~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099        116 NTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            2456889999999999999999988854

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.74  E-value=1.6e-18  Score=146.17  Aligned_cols=120  Identities=21%  Similarity=0.275  Sum_probs=93.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||+|||+.|......||++|++.++|++-          +++.+|+..++|.+.+.+.  ...+|.++|-|
T Consensus        65 ~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFST----------TDr~SFea~~~w~~kv~~e--~~~IPtV~vqN  132 (246)
T KOG4252|consen   65 LIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFST----------TDRYSFEATLEWYNKVQKE--TERIPTVFVQN  132 (246)
T ss_pred             hHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEec----------ccHHHHHHHHHHHHHHHHH--hccCCeEEeec
Confidence            45567788999999999999999999999999999986          6889999999999998664  34799999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+||.+.-...                .|  .++..++-                   .....|.||++..-||..+|..
T Consensus       133 KIDlveds~~~----------------~~--evE~lak~-------------------l~~RlyRtSvked~NV~~vF~Y  175 (246)
T KOG4252|consen  133 KIDLVEDSQMD----------------KG--EVEGLAKK-------------------LHKRLYRTSVKEDFNVMHVFAY  175 (246)
T ss_pred             cchhhHhhhcc----------------hH--HHHHHHHH-------------------hhhhhhhhhhhhhhhhHHHHHH
Confidence            99998752211                11  12222221                   1233567999999999999999


Q ss_pred             HHHHHHHhh
Q 018283          343 VDETLRRRH  351 (358)
Q Consensus       343 i~~~i~~~~  351 (358)
                      +++.+.+..
T Consensus       176 LaeK~~q~~  184 (246)
T KOG4252|consen  176 LAEKLTQQK  184 (246)
T ss_pred             HHHHHHHHH
Confidence            999887543

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.72  E-value=1.3e-16  Score=143.61  Aligned_cols=133  Identities=16%  Similarity=0.147  Sum_probs=85.5

Q ss_pred             ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283          186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD  265 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D  265 (358)
                      .+.+.+|||+||+.++.+|..||.+++++++|+|.+          ...++.+....+...+......+.|+++++||+|
T Consensus        53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~----------~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~D  122 (219)
T COG1100          53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDST----------LRESSDELTEEWLEELRELAPDDVPILLVGNKID  122 (219)
T ss_pred             EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecc----------cchhhhHHHHHHHHHHHHhCCCCceEEEEecccc
Confidence            688999999999999999999999999999999973          4455555544444333332224689999999999


Q ss_pred             chhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeecc--ChhhHHHHHHHH
Q 018283          266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL--DPKLVKKTFKLV  343 (358)
Q Consensus       266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~--d~~ni~~vf~~i  343 (358)
                      ++.+......+...  +       ............      ....   .   ..... ++.+||+  .+.+|..+|..+
T Consensus       123 l~~~~~~~~~~~~~--~-------~~~~~~~~~~~~------~~~~---~---~~~~~-~~~~s~~~~~~~~v~~~~~~~  180 (219)
T COG1100         123 LFDEQSSSEEILNQ--L-------NREVVLLVLAPK------AVLP---E---VANPA-LLETSAKSLTGPNVNELFKEL  180 (219)
T ss_pred             cccchhHHHHHHhh--h-------hcCcchhhhHhH------Hhhh---h---hcccc-eeEeecccCCCcCHHHHHHHH
Confidence            98764321100000  0       000011111111      1000   0   01122 6789999  999999999999


Q ss_pred             HHHHHHh
Q 018283          344 DETLRRR  350 (358)
Q Consensus       344 ~~~i~~~  350 (358)
                      ...+...
T Consensus       181 ~~~~~~~  187 (219)
T COG1100         181 LRKLLEE  187 (219)
T ss_pred             HHHHHHh
Confidence            9888643

>cd04171 SelB SelB subfamily

Probab=99.71  E-value=2.6e-16  Score=134.39  Aligned_cols=114  Identities=18%  Similarity=0.229  Sum_probs=73.3

Q ss_pred             ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283          186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD  265 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D  265 (358)
                      +..+.+|||+|++.+...+..++++++++|+|+|.++           ....++...+..+ ..  ....|+++++||+|
T Consensus        50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~-----------~~~~~~~~~~~~~-~~--~~~~~~ilv~NK~D  115 (164)
T cd04171          50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADE-----------GIMPQTREHLEIL-EL--LGIKRGLVVLTKAD  115 (164)
T ss_pred             CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCC-----------CccHhHHHHHHHH-HH--hCCCcEEEEEECcc
Confidence            5689999999999998888889999999999999742           1111222222211 11  12249999999999


Q ss_pred             chhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283          266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~  345 (358)
                      +..+.                       ......+.+.+.+...         ....+.++.+||++++|++++|+.+..
T Consensus       116 l~~~~-----------------------~~~~~~~~~~~~~~~~---------~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         116 LVDED-----------------------WLELVEEEIRELLAGT---------FLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             ccCHH-----------------------HHHHHHHHHHHHHHhc---------CcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            96431                       0111122222222210         002356788999999999999998753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.69  E-value=2.1e-17  Score=144.27  Aligned_cols=130  Identities=16%  Similarity=0.176  Sum_probs=90.8

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEEee
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ++.+.+.+|||+||+.|.++|+-.|.++|.+|.||++          .+..++++. -.|+-++..+  .+++|++|||+
T Consensus        50 g~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv----------~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGt  117 (198)
T KOG0393|consen   50 GKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSV----------VSPESFENVKSKWIPEIKHH--CPNVPIILVGT  117 (198)
T ss_pred             CCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEc----------CChhhHHHHHhhhhHHHHhh--CCCCCEEEEee
Confidence            7889999999999999999998899999999999998          466777775 4455555443  36899999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.||..+......+.     .+.    ..+...+++.. +.++-              .-+.++++||++..|++++|+.
T Consensus       118 k~DLr~d~~~~~~l~-----~~~----~~~Vt~~~g~~-lA~~i--------------ga~~y~EcSa~tq~~v~~vF~~  173 (198)
T KOG0393|consen  118 KADLRDDPSTLEKLQ-----RQG----LEPVTYEQGLE-LAKEI--------------GAVKYLECSALTQKGVKEVFDE  173 (198)
T ss_pred             hHHhhhCHHHHHHHH-----hcc----CCcccHHHHHH-HHHHh--------------CcceeeeehhhhhCCcHHHHHH
Confidence            999985421100010     000    01122333322 11111              1256889999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      .....+.
T Consensus       174 a~~~~l~  180 (198)
T KOG0393|consen  174 AIRAALR  180 (198)
T ss_pred             HHHHHhc
Confidence            8888765

>cd01890 LepA LepA subfamily

Probab=99.67  E-value=1.4e-15  Score=132.23  Aligned_cols=113  Identities=12%  Similarity=0.091  Sum_probs=76.2

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      .+.+.+++|||+|++.++..|..++++++++|+|+|.++-          ... .....+..+..    .++|+++++||
T Consensus        64 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~----------~~~-~~~~~~~~~~~----~~~~iiiv~NK  128 (179)
T cd01890          64 GQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQG----------VEA-QTLANFYLALE----NNLEIIPVINK  128 (179)
T ss_pred             CCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCC----------ccH-hhHHHHHHHHH----cCCCEEEEEEC
Confidence            4678899999999999999999999999999999998531          111 11222222222    36799999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      +|+.+..                        ..+..+.+.+.+.       .     ....++.+||++++||+++|+++
T Consensus       129 ~Dl~~~~------------------------~~~~~~~~~~~~~-------~-----~~~~~~~~Sa~~g~gi~~l~~~l  172 (179)
T cd01890         129 IDLPSAD------------------------PERVKQQIEDVLG-------L-----DPSEAILVSAKTGLGVEDLLEAI  172 (179)
T ss_pred             CCCCcCC------------------------HHHHHHHHHHHhC-------C-----CcccEEEeeccCCCCHHHHHHHH
Confidence            9985321                        0111111222110       0     11236789999999999999999


Q ss_pred             HHHH
Q 018283          344 DETL  347 (358)
Q Consensus       344 ~~~i  347 (358)
                      .+.+
T Consensus       173 ~~~~  176 (179)
T cd01890         173 VERI  176 (179)
T ss_pred             HhhC
Confidence            8754

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=4.2e-16  Score=130.12  Aligned_cols=130  Identities=21%  Similarity=0.327  Sum_probs=97.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ...+++|+.+|.||+..-|+.|..||..+++++|.||.          .+.+|+.++...++.++....+.++|+++++|
T Consensus        60 ~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda----------~d~er~~es~~eld~ll~~e~la~vp~lilgn  129 (193)
T KOG0077|consen   60 SIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA----------YDQERFAESKKELDALLSDESLATVPFLILGN  129 (193)
T ss_pred             eecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh----------hhHHHhHHHHHHHHHHHhHHHHhcCcceeecc
Confidence            56889999999999999999999999999999999997          67899999999999999988888999999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhc--CCCCCCCceEEEEEeeccChhhHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQS--TAPDRVDRVFKIYRTTALDPKLVKKTF  340 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~--~~~~~~~~~~~~~~tSA~d~~ni~~vf  340 (358)
                      |+|...+--                        ++-..|-..-+..+-...  .......|++..+.+|...+.+--+.|
T Consensus       130 KId~p~a~s------------------------e~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~f  185 (193)
T KOG0077|consen  130 KIDIPYAAS------------------------EDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGF  185 (193)
T ss_pred             cccCCCccc------------------------HHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceee
Confidence            999865410                        111112111121111000  001113577888889999988888888


Q ss_pred             HHHHHH
Q 018283          341 KLVDET  346 (358)
Q Consensus       341 ~~i~~~  346 (358)
                      .++...
T Consensus       186 kwl~qy  191 (193)
T KOG0077|consen  186 KWLSQY  191 (193)
T ss_pred             eehhhh
Confidence            776543

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.65  E-value=3.6e-15  Score=128.24  Aligned_cols=117  Identities=21%  Similarity=0.188  Sum_probs=73.0

Q ss_pred             cccceEEEEEecCCCch----hhhhHh-----hhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRN----ERRKWI-----HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE  253 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~----~r~~w~-----~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~  253 (358)
                      ....+.+++|||+|+..    .+..|.     .....++++|+|+|.++.        ..-++.+...++..+...  ..
T Consensus        43 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~--------~~~~~~~~~~~~~~l~~~--~~  112 (168)
T cd01897          43 DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSET--------CGYSLEEQLSLFEEIKPL--FK  112 (168)
T ss_pred             ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcc--------cccchHHHHHHHHHHHhh--cC
Confidence            44568999999999842    111111     112236899999998531        111334445566655432  24


Q ss_pred             CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283          254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP  333 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~  333 (358)
                      +.|+++++||+|+.+..                       ...+..     ++..           ...+.++.|||+++
T Consensus       113 ~~pvilv~NK~Dl~~~~-----------------------~~~~~~-----~~~~-----------~~~~~~~~~Sa~~~  153 (168)
T cd01897         113 NKPVIVVLNKIDLLTFE-----------------------DLSEIE-----EEEE-----------LEGEEVLKISTLTE  153 (168)
T ss_pred             cCCeEEEEEccccCchh-----------------------hHHHHH-----Hhhh-----------hccCceEEEEeccc
Confidence            78999999999995421                       111111     1111           12356789999999


Q ss_pred             hhHHHHHHHHHHHHH
Q 018283          334 KLVKKTFKLVDETLR  348 (358)
Q Consensus       334 ~ni~~vf~~i~~~i~  348 (358)
                      +|++++|+++.+.++
T Consensus       154 ~gi~~l~~~l~~~~~  168 (168)
T cd01897         154 EGVDEVKNKACELLL  168 (168)
T ss_pred             CCHHHHHHHHHHHhC
Confidence            999999999988763

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.65  E-value=4.2e-15  Score=132.85  Aligned_cols=77  Identities=21%  Similarity=0.355  Sum_probs=61.6

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCC-cEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC--CCCCcEEEE
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGV-SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC--FEKTSFMLF  260 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~-~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~--~~~~~iilv  260 (358)
                      .+...+.+||++||.++|..|..|++++ +++|||+|.++         ..+.+.++..++..++....  ..++|++|+
T Consensus        45 ~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~---------~~~~~~~~~~~l~~il~~~~~~~~~~pvliv  115 (203)
T cd04105          45 GKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSAT---------FQKNLKDVAEFLYDILTDLEKVKNKIPVLIA  115 (203)
T ss_pred             CCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECcc---------chhHHHHHHHHHHHHHHHHhhccCCCCEEEE
Confidence            3467899999999999999999999999 99999999852         12566777777766654332  247899999


Q ss_pred             eeCCCchhh
Q 018283          261 LNKFDIFEK  269 (358)
Q Consensus       261 ~NK~Dl~~e  269 (358)
                      +||+|++.+
T Consensus       116 ~NK~Dl~~a  124 (203)
T cd04105         116 CNKQDLFTA  124 (203)
T ss_pred             ecchhhccc
Confidence            999999754

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.63  E-value=6.7e-15  Score=126.34  Aligned_cols=118  Identities=14%  Similarity=0.036  Sum_probs=76.9

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  264 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~  264 (358)
                      .+..+.+|||+|+..++..|..++..++++++|+|.++.+           .......+..+..    .++|+++++||+
T Consensus        48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~-----------~~~~~~~~~~~~~----~~~p~ivv~NK~  112 (168)
T cd01887          48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGV-----------MPQTIEAIKLAKA----ANVPFIVALNKI  112 (168)
T ss_pred             CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCc-----------cHHHHHHHHHHHH----cCCCEEEEEEce
Confidence            4678999999999999999999999999999999986321           1112222222222    367999999999


Q ss_pred             CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283          265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD  344 (358)
Q Consensus       265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~  344 (358)
                      |+..+..                     ....+...    .+.....  ..   ..+.+.++.+||++++|+.++|+++.
T Consensus       113 Dl~~~~~---------------------~~~~~~~~----~~~~~~~--~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~  162 (168)
T cd01887         113 DKPNANP---------------------ERVKNELS----ELGLQGE--DE---WGGDVQIVPTSAKTGEGIDDLLEAIL  162 (168)
T ss_pred             ecccccH---------------------HHHHHHHH----Hhhcccc--cc---ccCcCcEEEeecccCCCHHHHHHHHH
Confidence            9853211                     01111111    1110000  00   12346678999999999999999987


Q ss_pred             HHH
Q 018283          345 ETL  347 (358)
Q Consensus       345 ~~i  347 (358)
                      +..
T Consensus       163 ~~~  165 (168)
T cd01887         163 LLA  165 (168)
T ss_pred             Hhh
Confidence            654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01878 HflX HflX subfamily

Probab=99.63  E-value=1.5e-14  Score=128.99  Aligned_cols=106  Identities=15%  Similarity=0.183  Sum_probs=67.4

Q ss_pred             eEEEEEecCCCc---------hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcE
Q 018283          187 EVYRLFDVGGQR---------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF  257 (358)
Q Consensus       187 ~~l~i~D~~Gq~---------~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~i  257 (358)
                      ..+.+|||+|+.         .++..+ ..+.+++++++|+|.++.       ........+..++..+    ...+.|+
T Consensus        89 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~-------~~~~~~~~~~~~l~~~----~~~~~~v  156 (204)
T cd01878          89 REVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDP-------DYEEQIETVEKVLKEL----GAEDIPM  156 (204)
T ss_pred             ceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCC-------ChhhHHHHHHHHHHHc----CcCCCCE
Confidence            378999999983         233333 346789999999998521       1111222233333332    2346899


Q ss_pred             EEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHH
Q 018283          258 MLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK  337 (358)
Q Consensus       258 ilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~  337 (358)
                      ++|+||+|+..+..                       ..   .    .+.            .....++++||+++.|+.
T Consensus       157 iiV~NK~Dl~~~~~-----------------------~~---~----~~~------------~~~~~~~~~Sa~~~~gi~  194 (204)
T cd01878         157 ILVLNKIDLLDDEE-----------------------LE---E----RLE------------AGRPDAVFISAKTGEGLD  194 (204)
T ss_pred             EEEEEccccCChHH-----------------------HH---H----Hhh------------cCCCceEEEEcCCCCCHH
Confidence            99999999864321                       00   0    000            122457889999999999


Q ss_pred             HHHHHHHHH
Q 018283          338 KTFKLVDET  346 (358)
Q Consensus       338 ~vf~~i~~~  346 (358)
                      ++|+++.+.
T Consensus       195 ~l~~~L~~~  203 (204)
T cd01878         195 ELLEAIEEL  203 (204)
T ss_pred             HHHHHHHhh
Confidence            999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.63  E-value=8.5e-15  Score=122.85  Aligned_cols=111  Identities=19%  Similarity=0.170  Sum_probs=74.1

Q ss_pred             ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEeeCC
Q 018283          186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFLNKF  264 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~NK~  264 (358)
                      .+.+.+||++|+..++..|..+++.+.++++++|++.+-         ..+.+.. .+...+... ...+.|+++++||.
T Consensus        49 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v---------~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~  118 (161)
T TIGR00231        49 TYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILV---------LDVEEILEKQTKEIIHH-AESNVPIILVGNKI  118 (161)
T ss_pred             EEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeee---------hhhhhHhHHHHHHHHHh-cccCCcEEEEEEcc
Confidence            378999999999999999999999999999999986331         2222333 222233221 11278999999999


Q ss_pred             CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283          265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD  344 (358)
Q Consensus       265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~  344 (358)
                      |+....+                           .......+..           .....++.+||+++.|+.++|+.+.
T Consensus       119 D~~~~~~---------------------------~~~~~~~~~~-----------~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       119 DLRDAKL---------------------------KTHVAFLFAK-----------LNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             cCCcchh---------------------------hHHHHHHHhh-----------ccCCceEEeecCCCCCHHHHHHHhh
Confidence            9854321                           0011111111           1123478899999999999999864

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK04213 GTP-binding protein; Provisional

Probab=99.62  E-value=8.4e-15  Score=130.21  Aligned_cols=125  Identities=15%  Similarity=0.222  Sum_probs=71.6

Q ss_pred             EEEEEecCC-----------CchhhhhHhhhhc-C---CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCC
Q 018283          188 VYRLFDVGG-----------QRNERRKWIHLFE-G---VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  252 (358)
Q Consensus       188 ~l~i~D~~G-----------q~~~r~~w~~y~~-~---~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~  252 (358)
                      .+.+|||+|           +++++..|..|+. +   ++++++|+|.+.+......-...+.+.....++..+..    
T Consensus        53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----  128 (201)
T PRK04213         53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE----  128 (201)
T ss_pred             ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH----
Confidence            589999999           7889999999986 3   46888888875432211000000111111222332221    


Q ss_pred             CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283          253 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD  332 (358)
Q Consensus       253 ~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d  332 (358)
                      .++|+++|+||+|+..++                         .+....+.+.+. +.    .+- ......++.|||++
T Consensus       129 ~~~p~iiv~NK~Dl~~~~-------------------------~~~~~~~~~~~~-~~----~~~-~~~~~~~~~~SA~~  177 (201)
T PRK04213        129 LGIPPIVAVNKMDKIKNR-------------------------DEVLDEIAERLG-LY----PPW-RQWQDIIAPISAKK  177 (201)
T ss_pred             cCCCeEEEEECccccCcH-------------------------HHHHHHHHHHhc-CC----ccc-cccCCcEEEEeccc
Confidence            268999999999985432                         011111122211 00    000 00012467899999


Q ss_pred             hhhHHHHHHHHHHHHH
Q 018283          333 PKLVKKTFKLVDETLR  348 (358)
Q Consensus       333 ~~ni~~vf~~i~~~i~  348 (358)
                      + ||+++|+++.+.+-
T Consensus       178 g-gi~~l~~~l~~~~~  192 (201)
T PRK04213        178 G-GIEELKEAIRKRLH  192 (201)
T ss_pred             C-CHHHHHHHHHHhhc
Confidence            9 99999999988763

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.62  E-value=2.9e-14  Score=126.32  Aligned_cols=71  Identities=17%  Similarity=0.167  Sum_probs=54.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ..+.+.+.+|||+|++.++..|..|+++++++|+|+|.++        .   .......++..+..    .++|+++++|
T Consensus        61 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~--------~---~~~~~~~~~~~~~~----~~~p~iiv~N  125 (194)
T cd01891          61 TYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE--------G---PMPQTRFVLKKALE----LGLKPIVVIN  125 (194)
T ss_pred             EECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCC--------C---ccHHHHHHHHHHHH----cCCCEEEEEE
Confidence            5567899999999999999999999999999999999852        1   11222233443332    2679999999


Q ss_pred             CCCchh
Q 018283          263 KFDIFE  268 (358)
Q Consensus       263 K~Dl~~  268 (358)
                      |+|+..
T Consensus       126 K~Dl~~  131 (194)
T cd01891         126 KIDRPD  131 (194)
T ss_pred             CCCCCC
Confidence            999864

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.61  E-value=2.9e-14  Score=124.48  Aligned_cols=127  Identities=16%  Similarity=0.156  Sum_probs=81.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ......+.+||++|+..++..|..++++++++++|+|.++.        .   ......++..+..    .+.|+++++|
T Consensus        58 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~--------~---~~~~~~~~~~~~~----~~~~i~iv~n  122 (189)
T cd00881          58 EWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEG--------V---QPQTREHLRIARE----GGLPIIVAIN  122 (189)
T ss_pred             eeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCC--------C---cHHHHHHHHHHHH----CCCCeEEEEE
Confidence            33467899999999999999999999999999999997521        1   1112223333322    3689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhh--cCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQ--STAPDRVDRVFKIYRTTALDPKLVKKTF  340 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~--~~~~~~~~~~~~~~~tSA~d~~ni~~vf  340 (358)
                      |+|+..+                       .......+++.+.+......  ............++.+||+++.|+.++|
T Consensus       123 K~D~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~  179 (189)
T cd00881         123 KIDRVGE-----------------------EDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELL  179 (189)
T ss_pred             CCCCcch-----------------------hcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHH
Confidence            9998642                       11222333333333221000  0000000134678889999999999999


Q ss_pred             HHHHHHH
Q 018283          341 KLVDETL  347 (358)
Q Consensus       341 ~~i~~~i  347 (358)
                      +.+.+.+
T Consensus       180 ~~l~~~l  186 (189)
T cd00881         180 EAIVEHL  186 (189)
T ss_pred             HHHHhhC
Confidence            9988765

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01898 Obg Obg subfamily

Probab=99.60  E-value=2.3e-14  Score=123.31  Aligned_cols=115  Identities=14%  Similarity=0.215  Sum_probs=68.9

Q ss_pred             eEEEEEecCCCc----hhhhhHhhh---hcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEE
Q 018283          187 EVYRLFDVGGQR----NERRKWIHL---FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML  259 (358)
Q Consensus       187 ~~l~i~D~~Gq~----~~r~~w~~y---~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iil  259 (358)
                      ..+.+|||+|+.    ..+.++..|   +++++++|+|+|.++-+      .....+..+.+.+....  +...++|+++
T Consensus        48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~------~~~~~~~~~~~~l~~~~--~~~~~~p~iv  119 (170)
T cd01898          48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDD------DPVEDYKTIRNELELYN--PELLEKPRIV  119 (170)
T ss_pred             CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCC------CHHHHHHHHHHHHHHhC--ccccccccEE
Confidence            489999999973    222334444   44699999999985210      11223333333333321  2234789999


Q ss_pred             EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283          260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT  339 (358)
Q Consensus       260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v  339 (358)
                      |+||+|+....                       ...+   ++......           .....++.+||+++.+++++
T Consensus       120 v~NK~Dl~~~~-----------------------~~~~---~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~l  162 (170)
T cd01898         120 VLNKIDLLDEE-----------------------ELFE---LLKELLKE-----------LWGKPVFPISALTGEGLDEL  162 (170)
T ss_pred             EEEchhcCCch-----------------------hhHH---HHHHHHhh-----------CCCCCEEEEecCCCCCHHHH
Confidence            99999985421                       1111   11111110           01245678999999999999


Q ss_pred             HHHHHHH
Q 018283          340 FKLVDET  346 (358)
Q Consensus       340 f~~i~~~  346 (358)
                      |+++.+.
T Consensus       163 ~~~i~~~  169 (170)
T cd01898         163 LRKLAEL  169 (170)
T ss_pred             HHHHHhh
Confidence            9998764

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01889 SelB_euk SelB subfamily

Probab=99.59  E-value=2.7e-14  Score=126.29  Aligned_cols=122  Identities=15%  Similarity=0.074  Sum_probs=72.4

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      .+...+.+|||+|+..+.+........++++|+|+|.++..       ... ..+...+    ...   .+.|+++++||
T Consensus        65 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~-------~~~-~~~~~~~----~~~---~~~~~iiv~NK  129 (192)
T cd01889          65 EENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGI-------QTQ-TAECLVI----GEI---LCKKLIVVLNK  129 (192)
T ss_pred             ccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc-------cHH-HHHHHHH----HHH---cCCCEEEEEEC
Confidence            34688999999999754322223345678999999975210       011 1111111    111   15699999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      +|+.......                   ...++..+++...+...         ....+.++.+||++++|+.++++++
T Consensus       130 ~Dl~~~~~~~-------------------~~~~~~~~~l~~~~~~~---------~~~~~~vi~iSa~~g~gi~~L~~~l  181 (192)
T cd01889         130 IDLIPEEERE-------------------RKIEKMKKKLQKTLEKT---------RFKNSPIIPVSAKPGGGEAELGKDL  181 (192)
T ss_pred             cccCCHHHHH-------------------HHHHHHHHHHHHHHHhc---------CcCCCCEEEEeccCCCCHHHHHHHH
Confidence            9986321000                   11223333333333221         0123567889999999999999999


Q ss_pred             HHHHH
Q 018283          344 DETLR  348 (358)
Q Consensus       344 ~~~i~  348 (358)
                      .+.|.
T Consensus       182 ~~~~~  186 (192)
T cd01889         182 NNLIV  186 (192)
T ss_pred             Hhccc
Confidence            98875

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=3.6e-15  Score=127.19  Aligned_cols=130  Identities=15%  Similarity=0.164  Sum_probs=95.5

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .+|+|+...+..+.+  +.+.++|..|||+||+.+-.+-..||-..+|+|+++|++          ++.....+-.|.+.
T Consensus        40 ~at~Gv~~~pl~f~t--n~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVt----------sr~t~~n~~rwhrd  107 (216)
T KOG0096|consen   40 PATLGVEVHPLLFDT--NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVT----------SRFTYKNVPRWHRD  107 (216)
T ss_pred             cCcceeEEeeeeeec--ccCcEEEEeeecccceeecccccccEEecceeEEEeeee----------ehhhhhcchHHHHH
Confidence            366776654433322  334699999999999999999999999999999999984          44555555666666


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      .+...  .++||+++|||.|....+....++.-.                                       ..+.+.+
T Consensus       108 ~~rv~--~NiPiv~cGNKvDi~~r~~k~k~v~~~---------------------------------------rkknl~y  146 (216)
T KOG0096|consen  108 LVRVR--ENIPIVLCGNKVDIKARKVKAKPVSFH---------------------------------------RKKNLQY  146 (216)
T ss_pred             HHHHh--cCCCeeeeccceeccccccccccceee---------------------------------------eccccee
Confidence            65432  368999999999987655433222100                                       1355788


Q ss_pred             EEeeccChhhHHHHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDETLR  348 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~  348 (358)
                      |+.||+.+-|.+.-|.+++..+.
T Consensus       147 ~~iSaksn~NfekPFl~LarKl~  169 (216)
T KOG0096|consen  147 YEISAKSNYNFERPFLWLARKLT  169 (216)
T ss_pred             EEeecccccccccchHHHhhhhc
Confidence            99999999999999999888764

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.57  E-value=1.4e-14  Score=121.26  Aligned_cols=99  Identities=11%  Similarity=0.182  Sum_probs=61.9

Q ss_pred             EEEecCCCc-----hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283          190 RLFDVGGQR-----NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  264 (358)
Q Consensus       190 ~i~D~~Gq~-----~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~  264 (358)
                      .+|||+|+.     .++.... ++++++++|+|+|+++-..          +.. ..+. ...      ..|+++++||+
T Consensus        38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s----------~~~-~~~~-~~~------~~p~ilv~NK~   98 (142)
T TIGR02528        38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPES----------RFP-PGFA-SIF------VKPVIGLVTKI   98 (142)
T ss_pred             eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCc----------CCC-hhHH-Hhc------cCCeEEEEEee
Confidence            689999983     3444433 5789999999999864321          111 1222 111      23999999999


Q ss_pred             CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283          265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD  344 (358)
Q Consensus       265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~  344 (358)
                      |+.+..                      ...+++.+++...               ....++.+||++++|++++|+++.
T Consensus        99 Dl~~~~----------------------~~~~~~~~~~~~~---------------~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528        99 DLAEAD----------------------VDIERAKELLETA---------------GAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             ccCCcc----------------------cCHHHHHHHHHHc---------------CCCcEEEEecCCCCCHHHHHHHHh
Confidence            985311                      1223333332211               012467899999999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.57  E-value=1.2e-14  Score=117.95  Aligned_cols=71  Identities=18%  Similarity=0.222  Sum_probs=53.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHH---HHHHHHHHcCCCCCCCcEEE
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET---KELFDWVLKQPCFEKTSFML  259 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~---~~~~~~i~~~~~~~~~~iil  259 (358)
                      ......+.+||++|++.+...|..++.+++++|+|+|++          +..++.+.   +.|+..+-.  ...++|++|
T Consensus        46 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s----------~~~s~~~~~~~~~~l~~~~~--~~~~~piil  113 (119)
T PF08477_consen   46 DGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLS----------DPESLEYLSQLLKWLKNIRK--RDKNIPIIL  113 (119)
T ss_dssp             TTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECC----------GHHHHHHHHHHHHHHHHHHH--HSSCSEEEE
T ss_pred             cCCceEEEEEecCccceecccccchhhcCcEEEEEEcCC----------ChHHHHHHHHHHHHHHHHHc--cCCCCCEEE
Confidence            444555999999999999999998999999999999985          33444444   455555543  234699999


Q ss_pred             EeeCCC
Q 018283          260 FLNKFD  265 (358)
Q Consensus       260 v~NK~D  265 (358)
                      ++||.|
T Consensus       114 v~nK~D  119 (119)
T PF08477_consen  114 VGNKSD  119 (119)
T ss_dssp             EEE-TC
T ss_pred             EEeccC
Confidence            999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.54  E-value=1.3e-13  Score=123.22  Aligned_cols=116  Identities=12%  Similarity=0.102  Sum_probs=75.1

Q ss_pred             eEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 018283          187 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI  266 (358)
Q Consensus       187 ~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl  266 (358)
                      ..+.+|||+|++.+..-+.....+++++|+|+|.++-       .......+.+..+..      ....|+++++||+|+
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~-------~~~~~t~~~l~~~~~------~~~~~iiivvNK~Dl  149 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEP-------CPQPQTSEHLAALEI------MGLKHIIIVQNKIDL  149 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCC-------CCCcchHHHHHHHHH------cCCCcEEEEEEchhc
Confidence            6789999999999999998889999999999998520       001111222222211      112579999999998


Q ss_pred             hhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283          267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       267 ~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~  346 (358)
                      ..+.                       ...+..+.+.+.+....         ...+.++.+||++++||+++|+.+.+.
T Consensus       150 ~~~~-----------------------~~~~~~~~i~~~~~~~~---------~~~~~i~~vSA~~g~gi~~L~~~l~~~  197 (203)
T cd01888         150 VKEE-----------------------QALENYEQIKKFVKGTI---------AENAPIIPISAQLKYNIDVLLEYIVKK  197 (203)
T ss_pred             cCHH-----------------------HHHHHHHHHHHHHhccc---------cCCCcEEEEeCCCCCCHHHHHHHHHHh
Confidence            5421                       11222233333332110         123557889999999999999998775


Q ss_pred             H
Q 018283          347 L  347 (358)
Q Consensus       347 i  347 (358)
                      +
T Consensus       198 l  198 (203)
T cd01888         198 I  198 (203)
T ss_pred             C
Confidence            4

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.53  E-value=1.5e-13  Score=113.79  Aligned_cols=115  Identities=19%  Similarity=0.250  Sum_probs=79.0

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      .....+.+||++|+..+...|..+++.++++|+|+|++          ....+.....++..........++|+++++||
T Consensus        42 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk  111 (157)
T cd00882          42 GKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT----------DRESFENVKEWLLLILINKEGENIPIILVGNK  111 (157)
T ss_pred             CEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhhccCCCcEEEEEec
Confidence            34678999999999999999999999999999999984          23344444444222333334457999999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      +|+.....                     ........    .+.           ....+.++.+||+++.++.++|+++
T Consensus       112 ~D~~~~~~---------------------~~~~~~~~----~~~-----------~~~~~~~~~~s~~~~~~i~~~~~~l  155 (157)
T cd00882         112 IDLPEERV---------------------VSEEELAE----QLA-----------KELGVPYFETSAKTGENVEELFEEL  155 (157)
T ss_pred             cccccccc---------------------hHHHHHHH----HHH-----------hhcCCcEEEEecCCCCChHHHHHHH
Confidence            99854311                     00111000    010           0123678899999999999999987


Q ss_pred             H
Q 018283          344 D  344 (358)
Q Consensus       344 ~  344 (358)
                      .
T Consensus       156 ~  156 (157)
T cd00882         156 A  156 (157)
T ss_pred             h
Confidence            5

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.52  E-value=1.3e-12  Score=115.10  Aligned_cols=120  Identities=18%  Similarity=0.262  Sum_probs=83.0

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      .....+.++|++|+..|........+.+|++|+|+|..+         .  -.....+.+..+..    .+.|+++++||
T Consensus        67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~---------g--~~~~~~~~l~~~~~----~~~p~ivvlNK  131 (188)
T PF00009_consen   67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDAND---------G--IQPQTEEHLKILRE----LGIPIIVVLNK  131 (188)
T ss_dssp             ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTT---------B--STHHHHHHHHHHHH----TT-SEEEEEET
T ss_pred             ccccceeecccccccceeecccceecccccceeeeeccc---------c--cccccccccccccc----cccceEEeeee
Confidence            678899999999999998888888999999999999731         1  11223344444433    26789999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      +|+...+                        +.+..+-+...|...+   ..+  ....+.++.+||+.+.|+.++++.+
T Consensus       132 ~D~~~~~------------------------~~~~~~~~~~~l~~~~---~~~--~~~~~~vi~~Sa~~g~gi~~Ll~~l  182 (188)
T PF00009_consen  132 MDLIEKE------------------------LEEIIEEIKEKLLKEY---GEN--GEEIVPVIPISALTGDGIDELLEAL  182 (188)
T ss_dssp             CTSSHHH------------------------HHHHHHHHHHHHHHHT---TST--TTSTEEEEEEBTTTTBTHHHHHHHH
T ss_pred             ccchhhh------------------------HHHHHHHHHHHhcccc---ccC--ccccceEEEEecCCCCCHHHHHHHH
Confidence            9997433                        2333444444443221   110  0135788899999999999999988


Q ss_pred             HHHH
Q 018283          344 DETL  347 (358)
Q Consensus       344 ~~~i  347 (358)
                      .+.+
T Consensus       183 ~~~~  186 (188)
T PF00009_consen  183 VELL  186 (188)
T ss_dssp             HHHS
T ss_pred             HHhC
Confidence            8754

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.52  E-value=2.2e-13  Score=115.58  Aligned_cols=107  Identities=14%  Similarity=0.089  Sum_probs=71.0

Q ss_pred             cceEEEEEecCCCchhhh------hHhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc
Q 018283          185 SGEVYRLFDVGGQRNERR------KWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS  256 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~------~w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~  256 (358)
                      .+..+.+|||+|++.+..      .+..++.  +++++|+|+|.++          .+.   ...++..+..    .++|
T Consensus        41 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~---~~~~~~~~~~----~~~~  103 (158)
T cd01879          41 GGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATN----------LER---NLYLTLQLLE----LGLP  103 (158)
T ss_pred             CCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCc----------chh---HHHHHHHHHH----cCCC
Confidence            346899999999987764      4777775  9999999999852          111   2233334332    2589


Q ss_pred             EEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhH
Q 018283          257 FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLV  336 (358)
Q Consensus       257 iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni  336 (358)
                      +++++||+|+.....                       .....+.+...+               .+.++.+||.++.|+
T Consensus       104 ~iiv~NK~Dl~~~~~-----------------------~~~~~~~~~~~~---------------~~~~~~iSa~~~~~~  145 (158)
T cd01879         104 VVVALNMIDEAEKRG-----------------------IKIDLDKLSELL---------------GVPVVPTSARKGEGI  145 (158)
T ss_pred             EEEEEehhhhccccc-----------------------chhhHHHHHHhh---------------CCCeEEEEccCCCCH
Confidence            999999999854311                       000011111111               145678999999999


Q ss_pred             HHHHHHHHHH
Q 018283          337 KKTFKLVDET  346 (358)
Q Consensus       337 ~~vf~~i~~~  346 (358)
                      ..+|+.+.+.
T Consensus       146 ~~l~~~l~~~  155 (158)
T cd01879         146 DELKDAIAEL  155 (158)
T ss_pred             HHHHHHHHHH
Confidence            9999988764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.50  E-value=2.7e-13  Score=136.11  Aligned_cols=110  Identities=15%  Similarity=0.139  Sum_probs=72.1

Q ss_pred             ccceEEEEEecCCCc--------hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283          184 KSGEVYRLFDVGGQR--------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT  255 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~--------~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~  255 (358)
                      ..+..+.+|||+|++        .++..+..+++++|++|||+|.++-        ......+...++.    .   .++
T Consensus        83 ~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~--------~s~~~~~i~~~l~----~---~~~  147 (472)
T PRK03003         83 WNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVG--------ATATDEAVARVLR----R---SGK  147 (472)
T ss_pred             ECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHH----H---cCC
Confidence            345678999999986        3566788899999999999998521        1111122222222    1   368


Q ss_pred             cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283          256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL  335 (358)
Q Consensus       256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n  335 (358)
                      |++||+||+|+....                      .  +. ..     +..+     +   -.   ..+.+||+++.|
T Consensus       148 piilV~NK~Dl~~~~----------------------~--~~-~~-----~~~~-----g---~~---~~~~iSA~~g~g  186 (472)
T PRK03003        148 PVILAANKVDDERGE----------------------A--DA-AA-----LWSL-----G---LG---EPHPVSALHGRG  186 (472)
T ss_pred             CEEEEEECccCCccc----------------------h--hh-HH-----HHhc-----C---CC---CeEEEEcCCCCC
Confidence            999999999985310                      0  00 01     1111     0   01   135799999999


Q ss_pred             HHHHHHHHHHHHHH
Q 018283          336 VKKTFKLVDETLRR  349 (358)
Q Consensus       336 i~~vf~~i~~~i~~  349 (358)
                      |.++|+++.+.+.+
T Consensus       187 i~eL~~~i~~~l~~  200 (472)
T PRK03003        187 VGDLLDAVLAALPE  200 (472)
T ss_pred             cHHHHHHHHhhccc
Confidence            99999999988754

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.50  E-value=7.2e-13  Score=131.41  Aligned_cols=70  Identities=24%  Similarity=0.280  Sum_probs=48.7

Q ss_pred             cccceEEEEEecCCCchhhhh--------HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNERRK--------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~--------w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ..++..+.+|||+|++.....        ...|+++++++|+|+|.++          ..+..+.  ++..+..    .+
T Consensus       247 ~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~----------~~s~~~~--~l~~~~~----~~  310 (442)
T TIGR00450       247 ELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQ----------PLTKDDF--LIIDLNK----SK  310 (442)
T ss_pred             EECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCChhHH--HHHHHhh----CC
Confidence            445678899999999765433        2468899999999999852          2222222  4444322    36


Q ss_pred             CcEEEEeeCCCchh
Q 018283          255 TSFMLFLNKFDIFE  268 (358)
Q Consensus       255 ~~iilv~NK~Dl~~  268 (358)
                      +|+++|+||+|+.+
T Consensus       311 ~piIlV~NK~Dl~~  324 (442)
T TIGR00450       311 KPFILVLNKIDLKI  324 (442)
T ss_pred             CCEEEEEECccCCC
Confidence            79999999999853

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.50  E-value=7.5e-13  Score=127.66  Aligned_cols=107  Identities=17%  Similarity=0.184  Sum_probs=67.7

Q ss_pred             cceEEEEEecCCC---------chhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283          185 SGEVYRLFDVGGQ---------RNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT  255 (358)
Q Consensus       185 ~~~~l~i~D~~Gq---------~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~  255 (358)
                      ++..+.+|||+|.         +.|++.+ .++.++|++|+|+|.|+-+       ....+..+..++..+    ...+.
T Consensus       235 ~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~-------~~~~~~~~~~~L~~l----~~~~~  302 (351)
T TIGR03156       235 DGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPD-------REEQIEAVEKVLEEL----GAEDI  302 (351)
T ss_pred             CCceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCc-------hHHHHHHHHHHHHHh----ccCCC
Confidence            3468999999998         3455444 3588999999999986311       111222223333333    22468


Q ss_pred             cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283          256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL  335 (358)
Q Consensus       256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n  335 (358)
                      |+++|+||+|+....                       .+.    .+    ..            ....++.+||++++|
T Consensus       303 piIlV~NK~Dl~~~~-----------------------~v~----~~----~~------------~~~~~i~iSAktg~G  339 (351)
T TIGR03156       303 PQLLVYNKIDLLDEP-----------------------RIE----RL----EE------------GYPEAVFVSAKTGEG  339 (351)
T ss_pred             CEEEEEEeecCCChH-----------------------hHH----HH----Hh------------CCCCEEEEEccCCCC
Confidence            999999999985321                       010    00    00            001357799999999


Q ss_pred             HHHHHHHHHHH
Q 018283          336 VKKTFKLVDET  346 (358)
Q Consensus       336 i~~vf~~i~~~  346 (358)
                      |+++++.+.+.
T Consensus       340 I~eL~~~I~~~  350 (351)
T TIGR03156       340 LDLLLEAIAER  350 (351)
T ss_pred             HHHHHHHHHhh
Confidence            99999988764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.50  E-value=3.3e-13  Score=133.95  Aligned_cols=117  Identities=19%  Similarity=0.288  Sum_probs=75.9

Q ss_pred             ccceEEEEEecCCCchhhhhH-----------hhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCC
Q 018283          184 KSGEVYRLFDVGGQRNERRKW-----------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  252 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w-----------~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~  252 (358)
                      ..+..+.+|||+|+++.+..+           ..+++.+|++|+|+|.++          .-. .....++..+..    
T Consensus       217 ~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~----------~~~-~~~~~~~~~~~~----  281 (429)
T TIGR03594       217 RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATE----------GIT-EQDLRIAGLILE----  281 (429)
T ss_pred             ECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCC----------Ccc-HHHHHHHHHHHH----
Confidence            344578999999987665443           346889999999999741          111 122334444433    


Q ss_pred             CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283          253 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD  332 (358)
Q Consensus       253 ~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d  332 (358)
                      .+.|+++++||+|+.+..                      ...++..+.+...+..           -..+.++++||++
T Consensus       282 ~~~~iiiv~NK~Dl~~~~----------------------~~~~~~~~~~~~~~~~-----------~~~~~vi~~SA~~  328 (429)
T TIGR03594       282 AGKALVIVVNKWDLVKDE----------------------KTREEFKKELRRKLPF-----------LDFAPIVFISALT  328 (429)
T ss_pred             cCCcEEEEEECcccCCCH----------------------HHHHHHHHHHHHhccc-----------CCCCceEEEeCCC
Confidence            268999999999986210                      1122333333333221           1235678899999


Q ss_pred             hhhHHHHHHHHHHHHH
Q 018283          333 PKLVKKTFKLVDETLR  348 (358)
Q Consensus       333 ~~ni~~vf~~i~~~i~  348 (358)
                      +.|+.++|+++.+...
T Consensus       329 g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       329 GQGVDKLLDAIDEVYE  344 (429)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999988654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.49  E-value=4.5e-13  Score=128.08  Aligned_cols=118  Identities=16%  Similarity=0.264  Sum_probs=73.7

Q ss_pred             ceEEEEEecCCCc-------hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 018283          186 GEVYRLFDVGGQR-------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM  258 (358)
Q Consensus       186 ~~~l~i~D~~Gq~-------~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ii  258 (358)
                      ...+.+||++|+.       .....|..+++.++++|||+|+++.+.    ....+.+..+.+.+...  .+.+.+.|++
T Consensus       204 ~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~----~~~~e~l~~l~~EL~~~--~~~l~~kp~I  277 (329)
T TIGR02729       204 GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDG----RDPIEDYEIIRNELKKY--SPELAEKPRI  277 (329)
T ss_pred             ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccc----cCHHHHHHHHHHHHHHh--hhhhccCCEE
Confidence            3678999999984       234455566678999999999864310    01122333333333332  2334578999


Q ss_pred             EEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHH
Q 018283          259 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK  338 (358)
Q Consensus       259 lv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~  338 (358)
                      ||+||+|+..+.                       ..++..+.+.+.+               .+.++.+||+++++|++
T Consensus       278 IV~NK~DL~~~~-----------------------~~~~~~~~l~~~~---------------~~~vi~iSAktg~GI~e  319 (329)
T TIGR02729       278 VVLNKIDLLDEE-----------------------ELAELLKELKKAL---------------GKPVFPISALTGEGLDE  319 (329)
T ss_pred             EEEeCccCCChH-----------------------HHHHHHHHHHHHc---------------CCcEEEEEccCCcCHHH
Confidence            999999985431                       1122222222111               13567899999999999


Q ss_pred             HHHHHHHHH
Q 018283          339 TFKLVDETL  347 (358)
Q Consensus       339 vf~~i~~~i  347 (358)
                      +|+++.+.+
T Consensus       320 L~~~I~~~l  328 (329)
T TIGR02729       320 LLYALAELL  328 (329)
T ss_pred             HHHHHHHHh
Confidence            999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.49  E-value=2.9e-13  Score=122.60  Aligned_cols=138  Identities=13%  Similarity=0.178  Sum_probs=81.0

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhh-----hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERR-----KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE  241 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~-----~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~  241 (358)
                      +|..+....+.     ..+.+.|++||.|||..+-.     .....|+++.++|||+|...          . .+.+.+.
T Consensus        33 ~T~~ve~~~v~-----~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs----------~-~~~~~l~   96 (232)
T PF04670_consen   33 PTIDVEKSHVR-----FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQS----------D-DYDEDLA   96 (232)
T ss_dssp             ---SEEEEEEE-----CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-----------S-TCHHHHH
T ss_pred             CcCCceEEEEe-----cCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEccc----------c-cHHHHHH
Confidence            55555554441     14567999999999976543     35778999999999999731          1 1333334


Q ss_pred             HHHHHHcC--CCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCC
Q 018283          242 LFDWVLKQ--PCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRV  319 (358)
Q Consensus       242 ~~~~i~~~--~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~  319 (358)
                      .|...+..  ...+++.+.++.+|+|+..+.                       ...+....+.++..+......     
T Consensus        97 ~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~-----------------------~r~~~~~~~~~~i~~~~~~~~-----  148 (232)
T PF04670_consen   97 YLSDCIEALRQYSPNIKVFVFIHKMDLLSED-----------------------EREEIFRDIQQRIRDELEDLG-----  148 (232)
T ss_dssp             HHHHHHHHHHHHSTT-EEEEEEE-CCCS-HH-----------------------HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHHhCCCCeEEEEEeecccCCHH-----------------------HHHHHHHHHHHHHHHHhhhcc-----
Confidence            33333221  123478999999999996432                       122333334444433332111     


Q ss_pred             CceEEEEEeeccChhhHHHHHHHHHHHHHH
Q 018283          320 DRVFKIYRTTALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       320 ~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~  349 (358)
                      -..+.+|.||--| +.+-++|..|+..++.
T Consensus       149 ~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP  177 (232)
T PF04670_consen  149 IEDITFFLTSIWD-ESLYEAWSKIVQKLIP  177 (232)
T ss_dssp             -TSEEEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred             ccceEEEeccCcC-cHHHHHHHHHHHHHcc
Confidence            1148899999999 6899999988887764

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.49  E-value=4e-13  Score=115.24  Aligned_cols=105  Identities=12%  Similarity=0.228  Sum_probs=67.1

Q ss_pred             EEecCCCchhhhhHhh----hhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 018283          191 LFDVGGQRNERRKWIH----LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI  266 (358)
Q Consensus       191 i~D~~Gq~~~r~~w~~----y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl  266 (358)
                      +|||+|+...+..|..    .+++++++|+|+|.++-+.         .+.   .++..+     ..++|+++++||+|+
T Consensus        41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s---------~~~---~~~~~~-----~~~~~ii~v~nK~Dl  103 (158)
T PRK15467         41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPES---------RLP---AGLLDI-----GVSKRQIAVISKTDM  103 (158)
T ss_pred             cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccc---------ccC---HHHHhc-----cCCCCeEEEEEcccc
Confidence            6999999544444433    3689999999999853211         111   122222     125799999999998


Q ss_pred             hhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283          267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       267 ~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~  346 (358)
                      ...                        +.+.+.+++.+.              .-...++++||++++||+++|+.+.+.
T Consensus       104 ~~~------------------------~~~~~~~~~~~~--------------~~~~p~~~~Sa~~g~gi~~l~~~l~~~  145 (158)
T PRK15467        104 PDA------------------------DVAATRKLLLET--------------GFEEPIFELNSHDPQSVQQLVDYLASL  145 (158)
T ss_pred             Ccc------------------------cHHHHHHHHHHc--------------CCCCCEEEEECCCccCHHHHHHHHHHh
Confidence            431                        122333332211              011357889999999999999999887


Q ss_pred             HHHh
Q 018283          347 LRRR  350 (358)
Q Consensus       347 i~~~  350 (358)
                      +.+.
T Consensus       146 ~~~~  149 (158)
T PRK15467        146 TKQE  149 (158)
T ss_pred             chhh
Confidence            7543

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.49  E-value=9.2e-13  Score=126.14  Aligned_cols=118  Identities=14%  Similarity=0.181  Sum_probs=75.8

Q ss_pred             cceEEEEEecCCCc-------hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHc-CCCCCCCc
Q 018283          185 SGEVYRLFDVGGQR-------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK-QPCFEKTS  256 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~-------~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~-~~~~~~~~  256 (358)
                      ....+.+||++|.-       .....|..+++.++++|+|+|+++.          +.+++...|..++.. .+.+.++|
T Consensus       204 ~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~----------~s~e~~~~~~~EL~~~~~~L~~kp  273 (335)
T PRK12299        204 DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAV----------DPVEDYKTIRNELEKYSPELADKP  273 (335)
T ss_pred             CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCC----------CCHHHHHHHHHHHHHhhhhcccCC
Confidence            34578999999973       2445566677889999999998632          123333334444322 23345789


Q ss_pred             EEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhH
Q 018283          257 FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLV  336 (358)
Q Consensus       257 iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni  336 (358)
                      +++|+||+|+..+..                     ...+....+    +..            ..+.++.+||++++||
T Consensus       274 ~IIV~NKiDL~~~~~---------------------~~~~~~~~~----~~~------------~~~~i~~iSAktg~GI  316 (335)
T PRK12299        274 RILVLNKIDLLDEEE---------------------EREKRAALE----LAA------------LGGPVFLISAVTGEGL  316 (335)
T ss_pred             eEEEEECcccCCchh---------------------HHHHHHHHH----HHh------------cCCCEEEEEcCCCCCH
Confidence            999999999854311                     000111111    110            1145678999999999


Q ss_pred             HHHHHHHHHHHHH
Q 018283          337 KKTFKLVDETLRR  349 (358)
Q Consensus       337 ~~vf~~i~~~i~~  349 (358)
                      +++|+++.+.+..
T Consensus       317 ~eL~~~L~~~l~~  329 (335)
T PRK12299        317 DELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988754

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.49  E-value=4.1e-13  Score=115.96  Aligned_cols=120  Identities=13%  Similarity=0.175  Sum_probs=71.6

Q ss_pred             ceEEEEEecCCCch----hhhh---HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC------C
Q 018283          186 GEVYRLFDVGGQRN----ERRK---WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC------F  252 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~----~r~~---w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~------~  252 (358)
                      +..+.+|||+|+..    .+.+   +..++++++++++|+|.++.+..    ...+.+.+...+...+.....      .
T Consensus        43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (176)
T cd01881          43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDI----GGVDPLEDYEILNAELKLYDLETILGLL  118 (176)
T ss_pred             CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccc----cccCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            67889999999732    2333   34467899999999998531100    001334443334444432221      2


Q ss_pred             CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283          253 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD  332 (358)
Q Consensus       253 ~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d  332 (358)
                      .+.|+++++||+|+.....                       ..+..   .....           ......++.+||++
T Consensus       119 ~~~p~ivv~NK~Dl~~~~~-----------------------~~~~~---~~~~~-----------~~~~~~~~~~Sa~~  161 (176)
T cd01881         119 TAKPVIYVLNKIDLDDAEE-----------------------LEEEL---VRELA-----------LEEGAEVVPISAKT  161 (176)
T ss_pred             hhCCeEEEEEchhcCchhH-----------------------HHHHH---HHHHh-----------cCCCCCEEEEehhh
Confidence            4689999999999864321                       01100   00000           01234578899999


Q ss_pred             hhhHHHHHHHHHHH
Q 018283          333 PKLVKKTFKLVDET  346 (358)
Q Consensus       333 ~~ni~~vf~~i~~~  346 (358)
                      +.|++++++.+...
T Consensus       162 ~~gl~~l~~~l~~~  175 (176)
T cd01881         162 EEGLDELIRAIYEL  175 (176)
T ss_pred             hcCHHHHHHHHHhh
Confidence            99999999988654

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK15494 era GTPase Era; Provisional

Probab=99.49  E-value=3.9e-13  Score=129.25  Aligned_cols=111  Identities=14%  Similarity=0.168  Sum_probs=65.9

Q ss_pred             ccceEEEEEecCCCch-hhhh-------HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283          184 KSGEVYRLFDVGGQRN-ERRK-------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT  255 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~-~r~~-------w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~  255 (358)
                      ..+..+.+|||+|+.. +..+       ...+++++|++|||+|.++         ......  ..++..+...    +.
T Consensus        97 ~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~---------s~~~~~--~~il~~l~~~----~~  161 (339)
T PRK15494         97 LKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK---------SFDDIT--HNILDKLRSL----NI  161 (339)
T ss_pred             eCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC---------CCCHHH--HHHHHHHHhc----CC
Confidence            3456789999999842 2111       1234789999999999631         112221  1233333221    35


Q ss_pred             cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283          256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL  335 (358)
Q Consensus       256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n  335 (358)
                      |.++|+||+|+..+.                        ..++.+++...              .....++.+||+++.|
T Consensus       162 p~IlViNKiDl~~~~------------------------~~~~~~~l~~~--------------~~~~~i~~iSAktg~g  203 (339)
T PRK15494        162 VPIFLLNKIDIESKY------------------------LNDIKAFLTEN--------------HPDSLLFPISALSGKN  203 (339)
T ss_pred             CEEEEEEhhcCcccc------------------------HHHHHHHHHhc--------------CCCcEEEEEeccCccC
Confidence            778899999985321                        12223322111              0113467899999999


Q ss_pred             HHHHHHHHHHHH
Q 018283          336 VKKTFKLVDETL  347 (358)
Q Consensus       336 i~~vf~~i~~~i  347 (358)
                      ++++|+++.+.+
T Consensus       204 v~eL~~~L~~~l  215 (339)
T PRK15494        204 IDGLLEYITSKA  215 (339)
T ss_pred             HHHHHHHHHHhC
Confidence            999999887654

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.48  E-value=2e-14  Score=122.28  Aligned_cols=126  Identities=15%  Similarity=0.116  Sum_probs=88.6

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ..-+++++||++||++|-.+..-||+++++...|+|+|.       +.+.+-...+++.+.+-++.|....+|++++.||
T Consensus        72 ~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~-------s~tfe~~skwkqdldsk~qLpng~Pv~~vllank  144 (229)
T KOG4423|consen   72 KTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTR-------SLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANK  144 (229)
T ss_pred             HHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccc-------cccccHHHHHHHhccCcccCCCCCcchheeccch
Confidence            344788999999999999999999999999999999962       3444545555555555555566667899999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      +|....-.                        .++-.-+. .|..      .    .-....++||||.+.||.++-+.+
T Consensus       145 Cd~e~~a~------------------------~~~~~~~d-~f~k------e----ngf~gwtets~Kenkni~Ea~r~l  189 (229)
T KOG4423|consen  145 CDQEKSAK------------------------NEATRQFD-NFKK------E----NGFEGWTETSAKENKNIPEAQREL  189 (229)
T ss_pred             hccChHhh------------------------hhhHHHHH-HHHh------c----cCccceeeeccccccChhHHHHHH
Confidence            99843211                        11111111 1110      0    112346889999999999999999


Q ss_pred             HHHHHHhh
Q 018283          344 DETLRRRH  351 (358)
Q Consensus       344 ~~~i~~~~  351 (358)
                      ++.|+-+.
T Consensus       190 Ve~~lvnd  197 (229)
T KOG4423|consen  190 VEKILVND  197 (229)
T ss_pred             HHHHHhhc
Confidence            99987543

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.48  E-value=7.7e-13  Score=135.15  Aligned_cols=112  Identities=13%  Similarity=0.075  Sum_probs=73.3

Q ss_pred             EEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCch
Q 018283          188 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF  267 (358)
Q Consensus       188 ~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~  267 (358)
                      .+.+|||+||+.|...|..++..+|++|+|+|.++           .....+.+.+....    ..++|+++++||+|+.
T Consensus       136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~d-----------gv~~qT~e~i~~~~----~~~vPiIVviNKiDl~  200 (587)
T TIGR00487       136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADD-----------GVMPQTIEAISHAK----AANVPIIVAINKIDKP  200 (587)
T ss_pred             EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCC-----------CCCHhHHHHHHHHH----HcCCCEEEEEECcccc
Confidence            78999999999999999999999999999999731           11222333333221    2368999999999985


Q ss_pred             hhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283          268 EKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       268 ~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~  345 (358)
                      +.                        +.++..+++... . +...     .-...+.++.+||++++||.++|+++..
T Consensus       201 ~~------------------------~~e~v~~~L~~~-g-~~~~-----~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       201 EA------------------------NPDRVKQELSEY-G-LVPE-----DWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             cC------------------------CHHHHHHHHHHh-h-hhHH-----hcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            32                        112222222210 0 0000     0011245778999999999999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01895 EngA2 EngA2 subfamily

Probab=99.47  E-value=1.2e-12  Score=112.26  Aligned_cols=114  Identities=22%  Similarity=0.334  Sum_probs=70.0

Q ss_pred             cceEEEEEecCCCchhh-----------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283          185 SGEVYRLFDVGGQRNER-----------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE  253 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r-----------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~  253 (358)
                      .+..+.+||++|.....           .....++.+++++|+|+|.++          ... .....++..+..    .
T Consensus        48 ~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~-~~~~~~~~~~~~----~  112 (174)
T cd01895          48 DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATE----------GIT-EQDLRIAGLILE----E  112 (174)
T ss_pred             CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCC----------Ccc-hhHHHHHHHHHh----c
Confidence            44568899999975331           112345789999999999742          111 112233333322    2


Q ss_pred             CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283          254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP  333 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~  333 (358)
                      +.|+++++||+|+.....                     ...++..+.+...+..           .....++.+||+++
T Consensus       113 ~~~~iiv~nK~Dl~~~~~---------------------~~~~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~  160 (174)
T cd01895         113 GKALVIVVNKWDLVEKDS---------------------KTMKEFKKEIRRKLPF-----------LDYAPIVFISALTG  160 (174)
T ss_pred             CCCEEEEEeccccCCccH---------------------HHHHHHHHHHHhhccc-----------ccCCceEEEeccCC
Confidence            579999999999864310                     1123333443333211           11245788999999


Q ss_pred             hhHHHHHHHHHH
Q 018283          334 KLVKKTFKLVDE  345 (358)
Q Consensus       334 ~ni~~vf~~i~~  345 (358)
                      +|+.++|+.+..
T Consensus       161 ~~i~~~~~~l~~  172 (174)
T cd01895         161 QGVDKLFDAIDE  172 (174)
T ss_pred             CCHHHHHHHHHH
Confidence            999999998865

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.46  E-value=9.9e-13  Score=116.06  Aligned_cols=110  Identities=15%  Similarity=0.165  Sum_probs=66.6

Q ss_pred             eEEEEEecCCC----------chhhhhHhhhhcCC---cEEEEEEEccccccccccccccchH-HHHHHHHHHHHcCCCC
Q 018283          187 EVYRLFDVGGQ----------RNERRKWIHLFEGV---SAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQPCF  252 (358)
Q Consensus       187 ~~l~i~D~~Gq----------~~~r~~w~~y~~~~---~~iIfv~dls~~d~~~~~~~~~~~l-~~~~~~~~~i~~~~~~  252 (358)
                      ..+.+|||+|.          +.+......|++.+   +++++|+|.+.         ..... .+...++    ..   
T Consensus        70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~---------~~~~~~~~i~~~l----~~---  133 (196)
T PRK00454         70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRH---------PLKELDLQMIEWL----KE---  133 (196)
T ss_pred             CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCC---------CCCHHHHHHHHHH----HH---
Confidence            67999999994          44555566677755   57888888641         11111 1112222    21   


Q ss_pred             CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283          253 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD  332 (358)
Q Consensus       253 ~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d  332 (358)
                      .+.|+++++||+|+....                       ..+.....+...+..            ....++.+||++
T Consensus       134 ~~~~~iiv~nK~Dl~~~~-----------------------~~~~~~~~i~~~l~~------------~~~~~~~~Sa~~  178 (196)
T PRK00454        134 YGIPVLIVLTKADKLKKG-----------------------ERKKQLKKVRKALKF------------GDDEVILFSSLK  178 (196)
T ss_pred             cCCcEEEEEECcccCCHH-----------------------HHHHHHHHHHHHHHh------------cCCceEEEEcCC
Confidence            257899999999986421                       112222222222211            124456899999


Q ss_pred             hhhHHHHHHHHHHHH
Q 018283          333 PKLVKKTFKLVDETL  347 (358)
Q Consensus       333 ~~ni~~vf~~i~~~i  347 (358)
                      ++|++++|+.+.+.+
T Consensus       179 ~~gi~~l~~~i~~~~  193 (196)
T PRK00454        179 KQGIDELRAAIAKWL  193 (196)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999887655

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.46  E-value=1.5e-12  Score=129.60  Aligned_cols=69  Identities=22%  Similarity=0.284  Sum_probs=47.2

Q ss_pred             cccceEEEEEecCCCchhhh--------hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNERR--------KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~--------~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ...+..+.+|||+|++....        ....+++++|++|+|+|.++.          ....+ ..++..      ..+
T Consensus       259 ~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~----------~s~~~-~~~l~~------~~~  321 (449)
T PRK05291        259 NLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEP----------LTEED-DEILEE------LKD  321 (449)
T ss_pred             EECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCC----------CChhH-HHHHHh------cCC
Confidence            44567899999999975432        133478999999999998532          12221 223322      346


Q ss_pred             CcEEEEeeCCCchh
Q 018283          255 TSFMLFLNKFDIFE  268 (358)
Q Consensus       255 ~~iilv~NK~Dl~~  268 (358)
                      +|+++|+||+|+..
T Consensus       322 ~piiiV~NK~DL~~  335 (449)
T PRK05291        322 KPVIVVLNKADLTG  335 (449)
T ss_pred             CCcEEEEEhhhccc
Confidence            89999999999854

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.45  E-value=1.4e-12  Score=133.76  Aligned_cols=114  Identities=11%  Similarity=0.077  Sum_probs=76.3

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ...+.+++|||+|+..|...|..+++.++++|+|+|.++-          ... .....+.....    .+.|+++|+||
T Consensus        67 g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g----------~~~-qt~~~~~~~~~----~~ipiIiViNK  131 (595)
T TIGR01393        67 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQG----------IEA-QTLANVYLALE----NDLEIIPVINK  131 (595)
T ss_pred             CCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCC----------CCH-hHHHHHHHHHH----cCCCEEEEEEC
Confidence            3458999999999999999999999999999999998521          111 11222222222    25799999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      +|+....                        .++..+-+.+.+. +           ....++.+||+++.||.++|+++
T Consensus       132 iDl~~~~------------------------~~~~~~el~~~lg-~-----------~~~~vi~vSAktG~GI~~Lle~I  175 (595)
T TIGR01393       132 IDLPSAD------------------------PERVKKEIEEVIG-L-----------DASEAILASAKTGIGIEEILEAI  175 (595)
T ss_pred             cCCCccC------------------------HHHHHHHHHHHhC-C-----------CcceEEEeeccCCCCHHHHHHHH
Confidence            9985321                        1111111222110 0           01236789999999999999999


Q ss_pred             HHHHH
Q 018283          344 DETLR  348 (358)
Q Consensus       344 ~~~i~  348 (358)
                      .+.+-
T Consensus       176 ~~~lp  180 (595)
T TIGR01393       176 VKRVP  180 (595)
T ss_pred             HHhCC
Confidence            87653

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.45  E-value=1.5e-12  Score=130.69  Aligned_cols=117  Identities=15%  Similarity=0.177  Sum_probs=71.6

Q ss_pred             ccceEEEEEecCCCc----------hhhhh-HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCC
Q 018283          184 KSGEVYRLFDVGGQR----------NERRK-WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  252 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~----------~~r~~-w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~  252 (358)
                      ..+..+.+|||+|++          .+... ...++++++++|+|+|.++          ..+.. ...++..+..    
T Consensus       256 ~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~----------~~s~~-~~~~~~~~~~----  320 (472)
T PRK03003        256 LGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASE----------PISEQ-DQRVLSMVIE----  320 (472)
T ss_pred             ECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCC----------CCCHH-HHHHHHHHHH----
Confidence            345567899999963          23332 2346789999999999752          22222 2234444433    


Q ss_pred             CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283          253 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD  332 (358)
Q Consensus       253 ~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d  332 (358)
                      .++|++||+||+|+..+..                       .......+...+..           .....+++|||++
T Consensus       321 ~~~piIiV~NK~Dl~~~~~-----------------------~~~~~~~i~~~l~~-----------~~~~~~~~~SAk~  366 (472)
T PRK03003        321 AGRALVLAFNKWDLVDEDR-----------------------RYYLEREIDRELAQ-----------VPWAPRVNISAKT  366 (472)
T ss_pred             cCCCEEEEEECcccCChhH-----------------------HHHHHHHHHHhccc-----------CCCCCEEEEECCC
Confidence            3689999999999954210                       00001111111110           1123467899999


Q ss_pred             hhhHHHHHHHHHHHHHH
Q 018283          333 PKLVKKTFKLVDETLRR  349 (358)
Q Consensus       333 ~~ni~~vf~~i~~~i~~  349 (358)
                      +.||+++|..+.+.+-+
T Consensus       367 g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        367 GRAVDKLVPALETALES  383 (472)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999887643

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.44  E-value=6.5e-13  Score=116.07  Aligned_cols=24  Identities=17%  Similarity=0.375  Sum_probs=21.7

Q ss_pred             hccccEEEecCCCCChhHHHHHHH
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ++..+|+++|.+++|||||++++.
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~   39 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALT   39 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHh
Confidence            567899999999999999999874

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.44  E-value=1.4e-12  Score=110.17  Aligned_cols=104  Identities=17%  Similarity=0.145  Sum_probs=68.0

Q ss_pred             cccceEEEEEecCCCchhhh--------hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNERR--------KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~--------~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ...+..+.+|||+|......        ....++..++++++|+|.+.          ....... ..+..      ..+
T Consensus        45 ~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~~~~~~-~~~~~------~~~  107 (157)
T cd04164          45 DIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASR----------GLDEEDL-EILEL------PAD  107 (157)
T ss_pred             EeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCCHHHH-HHHHh------hcC
Confidence            33457899999999754421        12246779999999999852          1222111 11211      346


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      .|+++++||+|+..+..                       .         ..            ......++.+||+++.
T Consensus       108 ~~vi~v~nK~D~~~~~~-----------------------~---------~~------------~~~~~~~~~~Sa~~~~  143 (157)
T cd04164         108 KPIIVVLNKSDLLPDSE-----------------------L---------LS------------LLAGKPIIAISAKTGE  143 (157)
T ss_pred             CCEEEEEEchhcCCccc-----------------------c---------cc------------ccCCCceEEEECCCCC
Confidence            89999999999864321                       0         00            0122456789999999


Q ss_pred             hHHHHHHHHHHHH
Q 018283          335 LVKKTFKLVDETL  347 (358)
Q Consensus       335 ni~~vf~~i~~~i  347 (358)
                      |++++++++.+.+
T Consensus       144 ~v~~l~~~l~~~~  156 (157)
T cd04164         144 GLDELKEALLELA  156 (157)
T ss_pred             CHHHHHHHHHHhh
Confidence            9999999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01894 EngA1 EngA1 subfamily

Probab=99.43  E-value=1.2e-12  Score=110.72  Aligned_cols=108  Identities=19%  Similarity=0.235  Sum_probs=69.2

Q ss_pred             ccceEEEEEecCCCchhhh--------hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283          184 KSGEVYRLFDVGGQRNERR--------KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT  255 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~--------~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~  255 (358)
                      ..+..+.+|||+|+..++.        .+..++++++++|+|+|.++.         .....  ...+.. +..   .+.
T Consensus        42 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~---------~~~~~--~~~~~~-~~~---~~~  106 (157)
T cd01894          42 WGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREG---------LTPAD--EEIAKY-LRK---SKK  106 (157)
T ss_pred             ECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEecccc---------CCccH--HHHHHH-HHh---cCC
Confidence            3457899999999988554        455678899999999997421         11111  112222 221   248


Q ss_pred             cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283          256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL  335 (358)
Q Consensus       256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n  335 (358)
                      |+++++||+|+.....                     .         ...+..+     .      .-.++.+||+++.|
T Consensus       107 piiiv~nK~D~~~~~~---------------------~---------~~~~~~~-----~------~~~~~~~Sa~~~~g  145 (157)
T cd01894         107 PVILVVNKVDNIKEED---------------------E---------AAEFYSL-----G------FGEPIPISAEHGRG  145 (157)
T ss_pred             CEEEEEECcccCChHH---------------------H---------HHHHHhc-----C------CCCeEEEecccCCC
Confidence            9999999999854311                     0         0111111     0      01357899999999


Q ss_pred             HHHHHHHHHHHH
Q 018283          336 VKKTFKLVDETL  347 (358)
Q Consensus       336 i~~vf~~i~~~i  347 (358)
                      ++++|+++.+.+
T Consensus       146 v~~l~~~l~~~~  157 (157)
T cd01894         146 IGDLLDAILELL  157 (157)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.43  E-value=2.3e-12  Score=128.38  Aligned_cols=126  Identities=12%  Similarity=0.194  Sum_probs=75.7

Q ss_pred             cccceEEEEEecCCCc----hh---hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC------
Q 018283          183 KKSGEVYRLFDVGGQR----NE---RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ------  249 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~----~~---r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~------  249 (358)
                      ......|.+|||+|..    ..   ...+..+++.++++|+|+|+++...-   ......+..+...+......      
T Consensus       202 ~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~---rdp~~d~~~i~~EL~~y~~~l~~~~~  278 (500)
T PRK12296        202 QAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPG---RDPLSDIDALEAELAAYAPALDGDLG  278 (500)
T ss_pred             EECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccc---cCchhhHHHHHHHHHHhhhcccccch
Confidence            3345789999999953    11   12234456789999999998642100   01112233333333333211      


Q ss_pred             -CCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEe
Q 018283          250 -PCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRT  328 (358)
Q Consensus       250 -~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~t  328 (358)
                       ..+.+.|++||+||+|+.+++-                          ..+.+...+..            +.+.++.+
T Consensus       279 ~~~l~~kP~IVVlNKiDL~da~e--------------------------l~e~l~~~l~~------------~g~~Vf~I  320 (500)
T PRK12296        279 LGDLAERPRLVVLNKIDVPDARE--------------------------LAEFVRPELEA------------RGWPVFEV  320 (500)
T ss_pred             hhhhcCCCEEEEEECccchhhHH--------------------------HHHHHHHHHHH------------cCCeEEEE
Confidence             0245689999999999964321                          11122222211            23567889


Q ss_pred             eccChhhHHHHHHHHHHHHHH
Q 018283          329 TALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       329 SA~d~~ni~~vf~~i~~~i~~  349 (358)
                      ||++++|+++++.++.+.+..
T Consensus       321 SA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        321 SAASREGLRELSFALAELVEE  341 (500)
T ss_pred             ECCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999887754

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=1.3e-12  Score=114.04  Aligned_cols=137  Identities=19%  Similarity=0.229  Sum_probs=87.1

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhc---CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC--CCCCCcEEE
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFE---GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CFEKTSFML  259 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~---~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~--~~~~~~iil  259 (358)
                      +.-..++.|.+|+.+.|.+...||.   .+.+||||||...|+         ....+..+.+-.++.+.  .-..+|+++
T Consensus        80 gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~---------k~vrdvaefLydil~~~~~~~~~~~vLI  150 (238)
T KOG0090|consen   80 GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFL---------KNVRDVAEFLYDILLDSRVKKNKPPVLI  150 (238)
T ss_pred             cCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccc---------hhhHHHHHHHHHHHHhhccccCCCCEEE
Confidence            3344899999999999999999998   799999999986443         44556666666655443  345689999


Q ss_pred             EeeCCCchhhh----hcc---C---CCcc-cc-----cccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE
Q 018283          260 FLNKFDIFEKK----VLK---V---PLNV-CE-----WFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF  323 (358)
Q Consensus       260 v~NK~Dl~~ek----i~~---~---~l~~-~~-----~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~  323 (358)
                      .+||+|++-+|    |+.   .   .+.. +.     -..++....   ..-.++.+|   +|..+         .+..+
T Consensus       151 aCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~---tlg~~g~dF---~fs~l---------~~~~V  215 (238)
T KOG0090|consen  151 ACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDF---TLGKEGEDF---KFSHL---------EDQKV  215 (238)
T ss_pred             EecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccc---ccccccccc---chhhc---------cccee
Confidence            99999998653    111   0   0000 00     000111000   112223332   34443         23568


Q ss_pred             EEEEeeccChhhHHHHHHHHHHH
Q 018283          324 KIYRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       324 ~~~~tSA~d~~ni~~vf~~i~~~  346 (358)
                      .+-++|++++ +|++.-+|+.+.
T Consensus       216 ~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  216 TFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             EEeecccCcC-ChHHHHHHHHHh
Confidence            8889999998 899988888764

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.43  E-value=2e-12  Score=134.20  Aligned_cols=116  Identities=12%  Similarity=0.053  Sum_probs=76.1

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  264 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~  264 (358)
                      ....+.+|||+|++.|...|..++..+|++|+|+|.++-        .   ...+.+.+..+.    ..++|+++++||+
T Consensus       293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dG--------v---~~QT~E~I~~~k----~~~iPiIVViNKi  357 (742)
T CHL00189        293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDG--------V---KPQTIEAINYIQ----AANVPIIVAINKI  357 (742)
T ss_pred             CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCC--------C---ChhhHHHHHHHH----hcCceEEEEEECC
Confidence            468899999999999999999999999999999997421        1   112222233321    1368999999999


Q ss_pred             CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283          265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD  344 (358)
Q Consensus       265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~  344 (358)
                      |+....                        .++....+...  .+...  .   ....+.++.+||++++||.++|+.+.
T Consensus       358 Dl~~~~------------------------~e~v~~eL~~~--~ll~e--~---~g~~vpvv~VSAktG~GIdeLle~I~  406 (742)
T CHL00189        358 DKANAN------------------------TERIKQQLAKY--NLIPE--K---WGGDTPMIPISASQGTNIDKLLETIL  406 (742)
T ss_pred             CccccC------------------------HHHHHHHHHHh--ccchH--h---hCCCceEEEEECCCCCCHHHHHHhhh
Confidence            986421                        11111111110  00000  0   01235678899999999999999887


Q ss_pred             HH
Q 018283          345 ET  346 (358)
Q Consensus       345 ~~  346 (358)
                      ..
T Consensus       407 ~l  408 (742)
T CHL00189        407 LL  408 (742)
T ss_pred             hh
Confidence            64

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.43  E-value=4.1e-12  Score=104.97  Aligned_cols=117  Identities=19%  Similarity=0.237  Sum_probs=84.7

Q ss_pred             cceEEEEEecCCCchh-hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          185 SGEVYRLFDVGGQRNE-RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~-r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      -.-.++++||+|-..+ ..+-.+||+-+|++++|+|..          +.++|...--+-+.|-.+..-..+||++++||
T Consensus        58 arE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~----------d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~  127 (198)
T KOG3883|consen   58 AREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPM----------DPESFQRVELLKKEIDKHKDKKEVPIVVLANK  127 (198)
T ss_pred             hhheEEEeecccccCchhhhhHhHhccCceEEEEecCC----------CHHHHHHHHHHHHHHhhccccccccEEEEech
Confidence            3456899999998777 778899999999999999963          44444443333333434555567999999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      +|+.+.+-                     .+.+-|..|..                ...+..++++|+|...+-+-|..+
T Consensus       128 rdr~~p~~---------------------vd~d~A~~Wa~----------------rEkvkl~eVta~dR~sL~epf~~l  170 (198)
T KOG3883|consen  128 RDRAEPRE---------------------VDMDVAQIWAK----------------REKVKLWEVTAMDRPSLYEPFTYL  170 (198)
T ss_pred             hhcccchh---------------------cCHHHHHHHHh----------------hhheeEEEEEeccchhhhhHHHHH
Confidence            99854321                     34555666622                234778899999999999999998


Q ss_pred             HHHHH
Q 018283          344 DETLR  348 (358)
Q Consensus       344 ~~~i~  348 (358)
                      ...+-
T Consensus       171 ~~rl~  175 (198)
T KOG3883|consen  171 ASRLH  175 (198)
T ss_pred             HHhcc
Confidence            87653

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.42  E-value=1.9e-12  Score=117.05  Aligned_cols=132  Identities=11%  Similarity=0.067  Sum_probs=78.0

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  246 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i  246 (358)
                      -|.......|      ..++..+.+|||+|++.+...+......++++|+|+|.++-..   + ............+...
T Consensus        63 ~T~d~~~~~~------~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~---~-~~~~~~~~~~~~~~~~  132 (219)
T cd01883          63 VTIDVGLAKF------ETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEF---E-AGFEKGGQTREHALLA  132 (219)
T ss_pred             cCeecceEEE------eeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCcc---c-cccccccchHHHHHHH
Confidence            3444445566      6678899999999999998888888899999999999863100   0 0001111122222221


Q ss_pred             HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283          247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY  326 (358)
Q Consensus       247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~  326 (358)
                       .  .....|+++++||+|+.....                  .. ...++..+.+...+....    .   ..+.+.++
T Consensus       133 -~--~~~~~~iiivvNK~Dl~~~~~------------------~~-~~~~~i~~~l~~~l~~~~----~---~~~~~~ii  183 (219)
T cd01883         133 -R--TLGVKQLIVAVNKMDDVTVNW------------------SE-ERYDEIKKELSPFLKKVG----Y---NPKDVPFI  183 (219)
T ss_pred             -H--HcCCCeEEEEEEccccccccc------------------cH-HHHHHHHHHHHHHHHHcC----C---CcCCceEE
Confidence             1  122368999999999963200                  00 112333333333333220    0   12357788


Q ss_pred             EeeccChhhHH
Q 018283          327 RTTALDPKLVK  337 (358)
Q Consensus       327 ~tSA~d~~ni~  337 (358)
                      .+||++|+||.
T Consensus       184 ~iSA~tg~gi~  194 (219)
T cd01883         184 PISGLTGDNLI  194 (219)
T ss_pred             EeecCcCCCCC
Confidence            99999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.42  E-value=5.1e-12  Score=129.76  Aligned_cols=115  Identities=11%  Similarity=0.095  Sum_probs=77.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +.+.+.+++|||+|+..|...|..+++.++++|+|+|.++-         .. . .....+.....    .+.|+++|+|
T Consensus        70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~g---------v~-~-qt~~~~~~~~~----~~lpiIvViN  134 (600)
T PRK05433         70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG---------VE-A-QTLANVYLALE----NDLEIIPVLN  134 (600)
T ss_pred             CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCC---------CC-H-HHHHHHHHHHH----CCCCEEEEEE
Confidence            34578999999999999999999999999999999998521         11 1 12222222222    2679999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..+.                        .++..+-+.+.+. +           ....++.+||+++.||.++|++
T Consensus       135 KiDl~~a~------------------------~~~v~~ei~~~lg-~-----------~~~~vi~iSAktG~GI~~Ll~~  178 (600)
T PRK05433        135 KIDLPAAD------------------------PERVKQEIEDVIG-I-----------DASDAVLVSAKTGIGIEEVLEA  178 (600)
T ss_pred             CCCCCccc------------------------HHHHHHHHHHHhC-C-----------CcceEEEEecCCCCCHHHHHHH
Confidence            99985321                        1111122222210 0           1123678999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +.+.+-
T Consensus       179 I~~~lp  184 (600)
T PRK05433        179 IVERIP  184 (600)
T ss_pred             HHHhCc
Confidence            987764

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.42  E-value=3.4e-12  Score=130.82  Aligned_cols=120  Identities=17%  Similarity=0.150  Sum_probs=76.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc-EEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-iilv~  261 (358)
                      ...+..+.+||++|++.|.+.+..++.++|++|+|+|.++        .......+.+.++..       .++| +++++
T Consensus        46 ~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~--------G~~~qT~ehl~il~~-------lgi~~iIVVl  110 (581)
T TIGR00475        46 PLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADE--------GVMTQTGEHLAVLDL-------LGIPHTIVVI  110 (581)
T ss_pred             EeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC--------CCcHHHHHHHHHHHH-------cCCCeEEEEE
Confidence            3344889999999999999999999999999999999742        111112222222211       2466 99999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+.++..                       ++...+.+.+.+...     .   ....+.++.+||++++||.++++
T Consensus       111 NK~Dlv~~~~-----------------------~~~~~~ei~~~l~~~-----~---~~~~~~ii~vSA~tG~GI~eL~~  159 (581)
T TIGR00475       111 TKADRVNEEE-----------------------IKRTEMFMKQILNSY-----I---FLKNAKIFKTSAKTGQGIGELKK  159 (581)
T ss_pred             ECCCCCCHHH-----------------------HHHHHHHHHHHHHHh-----C---CCCCCcEEEEeCCCCCCchhHHH
Confidence            9999864311                       111111111111111     0   01135678899999999999999


Q ss_pred             HHHHHHH
Q 018283          342 LVDETLR  348 (358)
Q Consensus       342 ~i~~~i~  348 (358)
                      .+.+.+-
T Consensus       160 ~L~~l~~  166 (581)
T TIGR00475       160 ELKNLLE  166 (581)
T ss_pred             HHHHHHH
Confidence            8876553

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.40  E-value=6.4e-12  Score=128.71  Aligned_cols=132  Identities=16%  Similarity=0.113  Sum_probs=89.2

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      ..|.......+      ..++.++.+|||+|+..|...+..+++.+|++|+|+|.++           .....+..++..
T Consensus        49 GiTI~~~~~~v------~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~-----------G~~~qT~~~l~~  111 (594)
T TIGR01394        49 GITILAKNTAI------RYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASE-----------GPMPQTRFVLKK  111 (594)
T ss_pred             CccEEeeeEEE------EECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCC-----------CCcHHHHHHHHH
Confidence            34444444555      6678999999999999999999999999999999999741           123344555655


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +..    .++|+++|+||+|+..++                        ..+..+-+...|..+...     .....+.+
T Consensus       112 a~~----~~ip~IVviNKiD~~~a~------------------------~~~v~~ei~~l~~~~g~~-----~e~l~~pv  158 (594)
T TIGR01394       112 ALE----LGLKPIVVINKIDRPSAR------------------------PDEVVDEVFDLFAELGAD-----DEQLDFPI  158 (594)
T ss_pred             HHH----CCCCEEEEEECCCCCCcC------------------------HHHHHHHHHHHHHhhccc-----cccccCcE
Confidence            544    257999999999985432                        122233333334332110     01123557


Q ss_pred             EEeeccChh----------hHHHHHHHHHHHH
Q 018283          326 YRTTALDPK----------LVKKTFKLVDETL  347 (358)
Q Consensus       326 ~~tSA~d~~----------ni~~vf~~i~~~i  347 (358)
                      +++||+++.          +|..+|+.+.+.+
T Consensus       159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            789999985          7999999888765

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.40  E-value=3.1e-12  Score=133.88  Aligned_cols=115  Identities=11%  Similarity=0.066  Sum_probs=74.8

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  264 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~  264 (358)
                      .+..+.||||+|++.|...|..+++.+|++|+|+|.++           .....+.+.+..+.    ..++|+++++||+
T Consensus       335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAdd-----------Gv~~qT~e~i~~a~----~~~vPiIVviNKi  399 (787)
T PRK05306        335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADD-----------GVMPQTIEAINHAK----AAGVPIIVAINKI  399 (787)
T ss_pred             CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCC-----------CCCHhHHHHHHHHH----hcCCcEEEEEECc
Confidence            35689999999999999999999999999999999731           11222333333221    2368999999999


Q ss_pred             CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283          265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD  344 (358)
Q Consensus       265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~  344 (358)
                      |+....                        .+.....+.. + .+....     ....+.++.+||++++||.++|+.+.
T Consensus       400 Dl~~a~------------------------~e~V~~eL~~-~-~~~~e~-----~g~~vp~vpvSAktG~GI~eLle~I~  448 (787)
T PRK05306        400 DKPGAN------------------------PDRVKQELSE-Y-GLVPEE-----WGGDTIFVPVSAKTGEGIDELLEAIL  448 (787)
T ss_pred             cccccC------------------------HHHHHHHHHH-h-cccHHH-----hCCCceEEEEeCCCCCCchHHHHhhh
Confidence            985421                        0111111110 0 000000     01235678899999999999999986


Q ss_pred             H
Q 018283          345 E  345 (358)
Q Consensus       345 ~  345 (358)
                      .
T Consensus       449 ~  449 (787)
T PRK05306        449 L  449 (787)
T ss_pred             h
Confidence            4

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.40  E-value=8.8e-12  Score=106.54  Aligned_cols=111  Identities=16%  Similarity=0.242  Sum_probs=77.9

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  264 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~  264 (358)
                      .+..+.++||+||++|+.+|..+++++.++|+++|.|          ....+ ++...+.-+....   .+|++++.||+
T Consensus        66 ~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss----------~~~~~-~a~~ii~f~~~~~---~ip~vVa~NK~  131 (187)
T COG2229          66 EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSS----------RPITF-HAEEIIDFLTSRN---PIPVVVAINKQ  131 (187)
T ss_pred             CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecC----------CCcch-HHHHHHHHHhhcc---CCCEEEEeecc
Confidence            4478899999999999999999999999999999964          22222 3333333221111   18999999999


Q ss_pred             CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283          265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD  344 (358)
Q Consensus       265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~  344 (358)
                      ||+.+.                    .++.+.++.+.   .              ...+..+.++|+++++.++..+.+.
T Consensus       132 DL~~a~--------------------ppe~i~e~l~~---~--------------~~~~~vi~~~a~e~~~~~~~L~~ll  174 (187)
T COG2229         132 DLFDAL--------------------PPEKIREALKL---E--------------LLSVPVIEIDATEGEGARDQLDVLL  174 (187)
T ss_pred             ccCCCC--------------------CHHHHHHHHHh---c--------------cCCCceeeeecccchhHHHHHHHHH
Confidence            997652                    11334444432   0              1246678899999999999988766


Q ss_pred             HH
Q 018283          345 ET  346 (358)
Q Consensus       345 ~~  346 (358)
                      ..
T Consensus       175 ~~  176 (187)
T COG2229         175 LK  176 (187)
T ss_pred             hh
Confidence            54

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.39  E-value=1.6e-12  Score=107.53  Aligned_cols=123  Identities=18%  Similarity=0.239  Sum_probs=85.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      .+-.+.|.+||+|||++++...+.-..++-+|+|++|+          +.+..+....+|+.+...... .-+| +++|+
T Consensus        65 ~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDL----------t~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGT  132 (205)
T KOG1673|consen   65 RGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDL----------TRRSTLNSIKEWYRQARGLNK-TAIP-ILVGT  132 (205)
T ss_pred             cceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEec----------CchHHHHHHHHHHHHHhccCC-ccce-EEecc
Confidence            45667899999999999999999889999999999999          456666677778877644221 1234 67899


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|++-. +          .|+++    - .-..+|..|-+-.                ....+++||....||+.+|..
T Consensus       133 KyD~fi~-l----------p~e~Q----~-~I~~qar~YAk~m----------------nAsL~F~Sts~sINv~KIFK~  180 (205)
T KOG1673|consen  133 KYDLFID-L----------PPELQ----E-TISRQARKYAKVM----------------NASLFFCSTSHSINVQKIFKI  180 (205)
T ss_pred             chHhhhc-C----------CHHHH----H-HHHHHHHHHHHHh----------------CCcEEEeeccccccHHHHHHH
Confidence            9998632 0          11110    0 1233444442211                134577899999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +...+.+
T Consensus       181 vlAklFn  187 (205)
T KOG1673|consen  181 VLAKLFN  187 (205)
T ss_pred             HHHHHhC
Confidence            8877754

>PRK10218 GTP-binding protein; Provisional

Probab=99.37  E-value=1.3e-11  Score=126.48  Aligned_cols=121  Identities=14%  Similarity=0.098  Sum_probs=81.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ..+++.+.+|||+|+..|...|..+++.++++|+|+|.++           .........+..+..    .+.|++++.|
T Consensus        64 ~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~-----------G~~~qt~~~l~~a~~----~gip~IVviN  128 (607)
T PRK10218         64 KWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFD-----------GPMPQTRFVTKKAFA----YGLKPIVVIN  128 (607)
T ss_pred             ecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEeccc-----------CccHHHHHHHHHHHH----cCCCEEEEEE
Confidence            6678999999999999999999999999999999999742           112223333444333    2678899999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh--------
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK--------  334 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~--------  334 (358)
                      |+|+..++                        .++..+-+...|..+..     ......+.++.+||+++.        
T Consensus       129 KiD~~~a~------------------------~~~vl~ei~~l~~~l~~-----~~~~~~~PVi~~SA~~G~~~~~~~~~  179 (607)
T PRK10218        129 KVDRPGAR------------------------PDWVVDQVFDLFVNLDA-----TDEQLDFPIVYASALNGIAGLDHEDM  179 (607)
T ss_pred             CcCCCCCc------------------------hhHHHHHHHHHHhccCc-----cccccCCCEEEeEhhcCcccCCcccc
Confidence            99986432                        12233334444433210     001234667889999997        


Q ss_pred             --hHHHHHHHHHHHH
Q 018283          335 --LVKKTFKLVDETL  347 (358)
Q Consensus       335 --ni~~vf~~i~~~i  347 (358)
                        ++..+|+.|.+.+
T Consensus       180 ~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        180 AEDMTPLYQAIVDHV  194 (607)
T ss_pred             ccchHHHHHHHHHhC
Confidence              5888888777665

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.37  E-value=1.5e-12  Score=113.15  Aligned_cols=78  Identities=23%  Similarity=0.369  Sum_probs=55.2

Q ss_pred             ccceEEEEEecCCCchhhhhHhhh---hcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC--CCCCcEE
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHL---FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC--FEKTSFM  258 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y---~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~--~~~~~ii  258 (358)
                      ...-.+.+.|++|+++.|.....+   ..++.+||||+|.+         .....+.+..+.+..++..+.  ...+|++
T Consensus        46 ~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs---------~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piL  116 (181)
T PF09439_consen   46 SKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSS---------TDQKELRDVAEYLYDILSDTEVQKNKPPIL  116 (181)
T ss_dssp             TCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETT---------THHHHHHHHHHHHHHHHHHHHCCTT--EEE
T ss_pred             CCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCc---------cchhhHHHHHHHHHHHHHhhhhccCCCCEE
Confidence            355678999999999999866554   78999999999975         234456677777777665433  3468999


Q ss_pred             EEeeCCCchhhh
Q 018283          259 LFLNKFDIFEKK  270 (358)
Q Consensus       259 lv~NK~Dl~~ek  270 (358)
                      |++||+|++.++
T Consensus       117 IacNK~Dl~~A~  128 (181)
T PF09439_consen  117 IACNKQDLFTAK  128 (181)
T ss_dssp             EEEE-TTSTT--
T ss_pred             EEEeCccccccC
Confidence            999999998753

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.36  E-value=5.6e-12  Score=125.38  Aligned_cols=104  Identities=19%  Similarity=0.244  Sum_probs=68.7

Q ss_pred             ccceEEEEEecCCCch--------hhhhHhhhhcCCcEEEEEEEccccccccccccccchH-HHHHHHHHHHHcCCCCCC
Q 018283          184 KSGEVYRLFDVGGQRN--------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQPCFEK  254 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~--------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l-~~~~~~~~~i~~~~~~~~  254 (358)
                      ..+..+.+|||+|+..        .+..+..+++++|++|||+|.++         ..... .+...++..       .+
T Consensus        46 ~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~---------~~~~~~~~~~~~l~~-------~~  109 (435)
T PRK00093         46 WLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRA---------GLTPADEEIAKILRK-------SN  109 (435)
T ss_pred             ECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCC---------CCCHHHHHHHHHHHH-------cC
Confidence            3457899999999987        45567778999999999999742         11111 122233322       16


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE-EEEEeeccCh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDP  333 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~d~  333 (358)
                      .|+++++||+|+.+..                      ...   .++     ..+            .+ .++.+||+++
T Consensus       110 ~piilv~NK~D~~~~~----------------------~~~---~~~-----~~l------------g~~~~~~iSa~~g  147 (435)
T PRK00093        110 KPVILVVNKVDGPDEE----------------------ADA---YEF-----YSL------------GLGEPYPISAEHG  147 (435)
T ss_pred             CcEEEEEECccCccch----------------------hhH---HHH-----Hhc------------CCCCCEEEEeeCC
Confidence            8999999999964210                      111   111     111            01 2467999999


Q ss_pred             hhHHHHHHHHHH
Q 018283          334 KLVKKTFKLVDE  345 (358)
Q Consensus       334 ~ni~~vf~~i~~  345 (358)
                      .|+.++|+.+..
T Consensus       148 ~gv~~l~~~I~~  159 (435)
T PRK00093        148 RGIGDLLDAILE  159 (435)
T ss_pred             CCHHHHHHHHHh
Confidence            999999999877

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.36  E-value=1.3e-11  Score=121.35  Aligned_cols=117  Identities=18%  Similarity=0.273  Sum_probs=71.9

Q ss_pred             ceEEEEEecCCCch-------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 018283          186 GEVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM  258 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~-------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ii  258 (358)
                      ...|.+||++|...       ....|..+.+.++++|+|+|+++.+.    ....+.+..+.+++...  .+.+.+.|++
T Consensus       205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~----~dp~e~~~~i~~EL~~y--~~~L~~kP~I  278 (424)
T PRK12297        205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEG----RDPIEDYEKINKELKLY--NPRLLERPQI  278 (424)
T ss_pred             CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCcccc----CChHHHHHHHHHHHhhh--chhccCCcEE
Confidence            46799999999732       22334445667999999999864210    01112233333333332  2334578999


Q ss_pred             EEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHH
Q 018283          259 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK  338 (358)
Q Consensus       259 lv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~  338 (358)
                      ||+||+||....                         +...+     +...+         .  ..++.+||++++|+++
T Consensus       279 VV~NK~DL~~~~-------------------------e~l~~-----l~~~l---------~--~~i~~iSA~tgeGI~e  317 (424)
T PRK12297        279 VVANKMDLPEAE-------------------------ENLEE-----FKEKL---------G--PKVFPISALTGQGLDE  317 (424)
T ss_pred             EEEeCCCCcCCH-------------------------HHHHH-----HHHHh---------C--CcEEEEeCCCCCCHHH
Confidence            999999983210                         11111     11110         1  3467899999999999


Q ss_pred             HHHHHHHHHHH
Q 018283          339 TFKLVDETLRR  349 (358)
Q Consensus       339 vf~~i~~~i~~  349 (358)
                      +++++.+.+..
T Consensus       318 L~~~L~~~l~~  328 (424)
T PRK12297        318 LLYAVAELLEE  328 (424)
T ss_pred             HHHHHHHHHHh
Confidence            99999887754

>cd04163 Era Era subfamily

Probab=99.36  E-value=2.1e-11  Score=103.40  Aligned_cols=112  Identities=20%  Similarity=0.258  Sum_probs=69.7

Q ss_pred             ccceEEEEEecCCCchhh--------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283          184 KSGEVYRLFDVGGQRNER--------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT  255 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r--------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~  255 (358)
                      .....+.+||++|.....        ..+..++..++++++|+|.++.        .....   ......+...    +.
T Consensus        48 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~--------~~~~~---~~~~~~~~~~----~~  112 (168)
T cd04163          48 DDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEP--------IGEGD---EFILELLKKS----KT  112 (168)
T ss_pred             cCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCc--------cCchH---HHHHHHHHHh----CC
Confidence            345789999999976433        2445668899999999998632        01111   1112222221    57


Q ss_pred             cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283          256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL  335 (358)
Q Consensus       256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n  335 (358)
                      |+++++||+|+....                      ....+....+...              .....++.+||+++.+
T Consensus       113 ~~iiv~nK~Dl~~~~----------------------~~~~~~~~~~~~~--------------~~~~~~~~~s~~~~~~  156 (168)
T cd04163         113 PVILVLNKIDLVKDK----------------------EDLLPLLEKLKEL--------------GPFAEIFPISALKGEN  156 (168)
T ss_pred             CEEEEEEchhccccH----------------------HHHHHHHHHHHhc--------------cCCCceEEEEeccCCC
Confidence            999999999985210                      1122222222211              1124567899999999


Q ss_pred             HHHHHHHHHHH
Q 018283          336 VKKTFKLVDET  346 (358)
Q Consensus       336 i~~vf~~i~~~  346 (358)
                      ++++|+.+.+.
T Consensus       157 ~~~l~~~l~~~  167 (168)
T cd04163         157 VDELLEEIVKY  167 (168)
T ss_pred             hHHHHHHHHhh
Confidence            99999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00436 era GTP-binding protein Era

Probab=99.36  E-value=1.9e-11  Score=113.98  Aligned_cols=67  Identities=16%  Similarity=0.214  Sum_probs=44.0

Q ss_pred             cceEEEEEecCCCchhh--------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc
Q 018283          185 SGEVYRLFDVGGQRNER--------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS  256 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r--------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~  256 (358)
                      .+..+.+|||+|....+        +.+..+++++|+++||+|.++.          ....  ..++..+ ..   .+.|
T Consensus        46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~----------~~~~--~~i~~~l-~~---~~~p  109 (270)
T TIGR00436        46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQW----------NGDG--EFVLTKL-QN---LKRP  109 (270)
T ss_pred             CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCC----------CchH--HHHHHHH-Hh---cCCC
Confidence            34578999999985421        2245678999999999998531          1111  1122222 21   2579


Q ss_pred             EEEEeeCCCch
Q 018283          257 FMLFLNKFDIF  267 (358)
Q Consensus       257 iilv~NK~Dl~  267 (358)
                      +++|+||+|+.
T Consensus       110 ~ilV~NK~Dl~  120 (270)
T TIGR00436       110 VVLTRNKLDNK  120 (270)
T ss_pred             EEEEEECeeCC
Confidence            99999999985

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.35  E-value=6e-12  Score=124.88  Aligned_cols=84  Identities=17%  Similarity=0.231  Sum_probs=54.0

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  246 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i  246 (358)
                      .|..+....|      ...+..+.+||++||+.|.+....++.+++++|+|+|.++-+        ......+...+ .+
T Consensus        71 ~Tid~~~~~~------~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~--------~~~~~~t~~~~-~~  135 (426)
T TIGR00483        71 VTIDVAHWKF------ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGE--------FEVQPQTREHA-FL  135 (426)
T ss_pred             ceEEEEEEEE------ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCC--------cccCCchHHHH-HH
Confidence            3444444556      667789999999999988777677788999999999985310        00001111111 11


Q ss_pred             HcCCCCCCCcEEEEeeCCCch
Q 018283          247 LKQPCFEKTSFMLFLNKFDIF  267 (358)
Q Consensus       247 ~~~~~~~~~~iilv~NK~Dl~  267 (358)
                      ...  ....|+++++||+|+.
T Consensus       136 ~~~--~~~~~iIVviNK~Dl~  154 (426)
T TIGR00483       136 ART--LGINQLIVAINKMDSV  154 (426)
T ss_pred             HHH--cCCCeEEEEEEChhcc
Confidence            111  1235899999999985

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.35  E-value=9e-12  Score=122.77  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=74.8

Q ss_pred             ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283          186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD  265 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D  265 (358)
                      ...+.+||++||+.|.+.|......+|++|+|+|.++-       .......+.+..+..      ....|+++++||+|
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g-------~~~~qt~e~l~~l~~------~gi~~iIVvvNK~D  145 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEP-------CPQPQTKEHLMALEI------IGIKNIVIVQNKID  145 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC-------ccccchHHHHHHHHH------cCCCeEEEEEEccc
Confidence            46899999999999999999999999999999997520       001222222332211      12347899999999


Q ss_pred             chhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283          266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~  345 (358)
                      +....-..                   ...++..+++...+             ...+.++.+||++++|+.++++.+..
T Consensus       146 l~~~~~~~-------------------~~~~~i~~~l~~~~-------------~~~~~ii~vSA~~g~gi~~L~e~L~~  193 (406)
T TIGR03680       146 LVSKEKAL-------------------ENYEEIKEFVKGTV-------------AENAPIIPVSALHNANIDALLEAIEK  193 (406)
T ss_pred             cCCHHHHH-------------------HHHHHHHhhhhhcc-------------cCCCeEEEEECCCCCChHHHHHHHHH
Confidence            86421000                   01122222211110             12356788999999999999999887


Q ss_pred             HH
Q 018283          346 TL  347 (358)
Q Consensus       346 ~i  347 (358)
                      .+
T Consensus       194 ~l  195 (406)
T TIGR03680       194 FI  195 (406)
T ss_pred             hC
Confidence            54

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.35  E-value=1.9e-11  Score=111.54  Aligned_cols=39  Identities=15%  Similarity=0.252  Sum_probs=30.3

Q ss_pred             ccceEEEEEecCCCchhh-------hhHhhhhcCCcEEEEEEEccc
Q 018283          184 KSGEVYRLFDVGGQRNER-------RKWIHLFEGVSAVIFCAAISE  222 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r-------~~w~~y~~~~~~iIfv~dls~  222 (358)
                      ..+..+++||++|+....       +.+..++++++++++|+|.++
T Consensus        44 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~   89 (233)
T cd01896          44 YKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATK   89 (233)
T ss_pred             ECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCc
Confidence            456789999999985332       234568999999999999864

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.34  E-value=2e-11  Score=124.61  Aligned_cols=66  Identities=20%  Similarity=0.124  Sum_probs=49.1

Q ss_pred             EEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCch
Q 018283          188 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF  267 (358)
Q Consensus       188 ~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~  267 (358)
                      .+.+|||+||+.|+.+|..+++.+|++|+|+|.++        .......+.+.++.   .    .++|+++++||+|+.
T Consensus        70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~--------g~~~qt~e~i~~l~---~----~~vpiIVv~NK~Dl~  134 (590)
T TIGR00491        70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINE--------GFKPQTQEALNILR---M----YKTPFVVAANKIDRI  134 (590)
T ss_pred             cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCc--------CCCHhHHHHHHHHH---H----cCCCEEEEEECCCcc
Confidence            48999999999999999999999999999999852        11111122222222   1    267999999999996


Q ss_pred             h
Q 018283          268 E  268 (358)
Q Consensus       268 ~  268 (358)
                      .
T Consensus       135 ~  135 (590)
T TIGR00491       135 P  135 (590)
T ss_pred             c
Confidence            4

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK11058 GTPase HflX; Provisional

Probab=99.34  E-value=4e-11  Score=118.41  Aligned_cols=110  Identities=12%  Similarity=0.091  Sum_probs=67.4

Q ss_pred             EEEEEecCCCchh--hhhH------hhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEE
Q 018283          188 VYRLFDVGGQRNE--RRKW------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML  259 (358)
Q Consensus       188 ~l~i~D~~Gq~~~--r~~w------~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iil  259 (358)
                      .+.+|||+|..+.  ...|      ..+++++|++|+|+|.|+       ......+..+..++..+.    ..++|+++
T Consensus       246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~-------~~~~e~l~~v~~iL~el~----~~~~pvIi  314 (426)
T PRK11058        246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAAD-------VRVQENIEAVNTVLEEID----AHEIPTLL  314 (426)
T ss_pred             eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCC-------ccHHHHHHHHHHHHHHhc----cCCCCEEE
Confidence            6789999998432  2233      345789999999999852       111122222334444432    23689999


Q ss_pred             EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283          260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT  339 (358)
Q Consensus       260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v  339 (358)
                      |+||+|+.....                     ...    ..    . ..          ... .++.+||++++|++++
T Consensus       315 V~NKiDL~~~~~---------------------~~~----~~----~-~~----------~~~-~~v~ISAktG~GIdeL  353 (426)
T PRK11058        315 VMNKIDMLDDFE---------------------PRI----DR----D-EE----------NKP-IRVWLSAQTGAGIPLL  353 (426)
T ss_pred             EEEcccCCCchh---------------------HHH----HH----H-hc----------CCC-ceEEEeCCCCCCHHHH
Confidence            999999853210                     000    00    0 00          001 1356999999999999


Q ss_pred             HHHHHHHHHH
Q 018283          340 FKLVDETLRR  349 (358)
Q Consensus       340 f~~i~~~i~~  349 (358)
                      |+++.+.+..
T Consensus       354 ~e~I~~~l~~  363 (426)
T PRK11058        354 FQALTERLSG  363 (426)
T ss_pred             HHHHHHHhhh
Confidence            9999988753

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.33  E-value=2.1e-11  Score=109.36  Aligned_cols=71  Identities=13%  Similarity=0.146  Sum_probs=48.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ..++..+.+|||+|++.+...+..+++.++++|+|+|.++         ..  .......+.. +..  ....++++|+|
T Consensus        73 ~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~---------~~--~~~~~~~~~~-~~~--~~~~~iIvviN  138 (208)
T cd04166          73 STPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARK---------GV--LEQTRRHSYI-LSL--LGIRHVVVAVN  138 (208)
T ss_pred             ecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCC---------Cc--cHhHHHHHHH-HHH--cCCCcEEEEEE
Confidence            4567789999999999888778888999999999999752         11  1111111111 111  11246888999


Q ss_pred             CCCch
Q 018283          263 KFDIF  267 (358)
Q Consensus       263 K~Dl~  267 (358)
                      |+|+.
T Consensus       139 K~D~~  143 (208)
T cd04166         139 KMDLV  143 (208)
T ss_pred             chhcc
Confidence            99985

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.33  E-value=4.4e-11  Score=101.82  Aligned_cols=106  Identities=17%  Similarity=0.168  Sum_probs=70.5

Q ss_pred             cccceEEEEEecCCCch------hhhhHhhhh--cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRN------ERRKWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~------~r~~w~~y~--~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ...+..+.+.|++|-.+      ..+.+..|.  ...|++|.|+|.+             .++..+.+..++...    +
T Consensus        43 ~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~-------------~l~r~l~l~~ql~e~----g  105 (156)
T PF02421_consen   43 KLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDAT-------------NLERNLYLTLQLLEL----G  105 (156)
T ss_dssp             EETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGG-------------GHHHHHHHHHHHHHT----T
T ss_pred             EecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCC-------------CHHHHHHHHHHHHHc----C
Confidence            55668899999999543      345566675  5899999999962             366667777777653    6


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      .|+++++||+|+.+++-..                   .+.+    .+.+.+               .+....+||++++
T Consensus       106 ~P~vvvlN~~D~a~~~g~~-------------------id~~----~Ls~~L---------------g~pvi~~sa~~~~  147 (156)
T PF02421_consen  106 IPVVVVLNKMDEAERKGIE-------------------IDAE----KLSERL---------------GVPVIPVSARTGE  147 (156)
T ss_dssp             SSEEEEEETHHHHHHTTEE-------------------E-HH----HHHHHH---------------TS-EEEEBTTTTB
T ss_pred             CCEEEEEeCHHHHHHcCCE-------------------ECHH----HHHHHh---------------CCCEEEEEeCCCc
Confidence            8999999999997653211                   1222    122221               2457889999999


Q ss_pred             hHHHHHHHH
Q 018283          335 LVKKTFKLV  343 (358)
Q Consensus       335 ni~~vf~~i  343 (358)
                      +++++++.|
T Consensus       148 g~~~L~~~I  156 (156)
T PF02421_consen  148 GIDELKDAI  156 (156)
T ss_dssp             THHHHHHHH
T ss_pred             CHHHHHhhC
Confidence            999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.33  E-value=2.1e-11  Score=121.26  Aligned_cols=117  Identities=19%  Similarity=0.310  Sum_probs=73.6

Q ss_pred             cccceEEEEEecCCCchhhhh-----------HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283          183 KKSGEVYRLFDVGGQRNERRK-----------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  251 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~-----------w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~  251 (358)
                      ...+..+.+|||+|..+....           ...+++.+|++|+|+|.++          ... .....++..+..   
T Consensus       217 ~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~----------~~~-~~~~~i~~~~~~---  282 (435)
T PRK00093        217 ERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATE----------GIT-EQDLRIAGLALE---  282 (435)
T ss_pred             EECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCC----------CCC-HHHHHHHHHHHH---
Confidence            345567899999997543322           2346789999999999752          111 112333433332   


Q ss_pred             CCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeecc
Q 018283          252 FEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL  331 (358)
Q Consensus       252 ~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~  331 (358)
                       .+.|+++++||+|+..+..                       ..+..+.+...+..           -..+.++++||+
T Consensus       283 -~~~~~ivv~NK~Dl~~~~~-----------------------~~~~~~~~~~~l~~-----------~~~~~i~~~SA~  327 (435)
T PRK00093        283 -AGRALVIVVNKWDLVDEKT-----------------------MEEFKKELRRRLPF-----------LDYAPIVFISAL  327 (435)
T ss_pred             -cCCcEEEEEECccCCCHHH-----------------------HHHHHHHHHHhccc-----------ccCCCEEEEeCC
Confidence             2579999999999863211                       12222333333221           123567889999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q 018283          332 DPKLVKKTFKLVDETLR  348 (358)
Q Consensus       332 d~~ni~~vf~~i~~~i~  348 (358)
                      ++.||.++|+.+.+...
T Consensus       328 ~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        328 TGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999877553

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.32  E-value=1.7e-11  Score=121.71  Aligned_cols=129  Identities=16%  Similarity=0.133  Sum_probs=74.9

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      ..|..+....|      ..++..+.+|||+|++.+.+........+|++|+|+|.++-.      .-.....+.+.+.  
T Consensus        69 G~T~d~~~~~~------~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~------~~~~~~~~~~~~~--  134 (425)
T PRK12317         69 GVTIDLAHKKF------ETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAG------GVMPQTREHVFLA--  134 (425)
T ss_pred             CccceeeeEEE------ecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCC------CCCcchHHHHHHH--
Confidence            44555556666      667889999999999887655555567899999999985200      0011111222221  


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                        ..  ....|+++++||+|+.....                     ..+.+..+.+...+....    -   ....+.+
T Consensus       135 --~~--~~~~~iivviNK~Dl~~~~~---------------------~~~~~~~~~i~~~l~~~g----~---~~~~~~i  182 (425)
T PRK12317        135 --RT--LGINQLIVAINKMDAVNYDE---------------------KRYEEVKEEVSKLLKMVG----Y---KPDDIPF  182 (425)
T ss_pred             --HH--cCCCeEEEEEEccccccccH---------------------HHHHHHHHHHHHHHHhhC----C---CcCcceE
Confidence              11  12247999999999853100                     111222222322222210    0   1123668


Q ss_pred             EEeeccChhhHHHHH
Q 018283          326 YRTTALDPKLVKKTF  340 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf  340 (358)
                      +.+||++++|+.+.+
T Consensus       183 i~iSA~~g~gi~~~~  197 (425)
T PRK12317        183 IPVSAFEGDNVVKKS  197 (425)
T ss_pred             EEeecccCCCccccc
Confidence            889999999998754

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.31  E-value=2.8e-11  Score=127.17  Aligned_cols=117  Identities=14%  Similarity=0.171  Sum_probs=70.9

Q ss_pred             ccceEEEEEecCCCch-hhhhH----------hhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCC
Q 018283          184 KSGEVYRLFDVGGQRN-ERRKW----------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  252 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~-~r~~w----------~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~  252 (358)
                      ..+..+.+|||+|+++ .+..|          ..+++.++++|+|+|.++          ..+.. ...++..+..    
T Consensus       495 ~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~----------~~s~~-~~~i~~~~~~----  559 (712)
T PRK09518        495 IDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQ----------PISEQ-DLKVMSMAVD----  559 (712)
T ss_pred             ECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCC----------CCCHH-HHHHHHHHHH----
Confidence            3445678999999742 22222          334688999999999852          11221 2334444433    


Q ss_pred             CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283          253 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD  332 (358)
Q Consensus       253 ~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d  332 (358)
                      .++|++||+||+|+.++..                       .+...+.+...+..           -.....+.+||++
T Consensus       560 ~~~piIiV~NK~DL~~~~~-----------------------~~~~~~~~~~~l~~-----------~~~~~ii~iSAkt  605 (712)
T PRK09518        560 AGRALVLVFNKWDLMDEFR-----------------------RQRLERLWKTEFDR-----------VTWARRVNLSAKT  605 (712)
T ss_pred             cCCCEEEEEEchhcCChhH-----------------------HHHHHHHHHHhccC-----------CCCCCEEEEECCC
Confidence            3689999999999954210                       11111111111111           0113457799999


Q ss_pred             hhhHHHHHHHHHHHHHH
Q 018283          333 PKLVKKTFKLVDETLRR  349 (358)
Q Consensus       333 ~~ni~~vf~~i~~~i~~  349 (358)
                      +.|+.++|+.+.+...+
T Consensus       606 g~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        606 GWHTNRLAPAMQEALES  622 (712)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999887654

>cd00880 Era_like Era (E

Probab=99.30  E-value=2.4e-11  Score=101.74  Aligned_cols=112  Identities=17%  Similarity=0.171  Sum_probs=70.8

Q ss_pred             ceEEEEEecCCCchhh-------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 018283          186 GEVYRLFDVGGQRNER-------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM  258 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r-------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ii  258 (358)
                      ...+.+||++|+....       ..+..++++++++++|+|.+...         ......  ++....    ..+.|++
T Consensus        44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~---------~~~~~~--~~~~~~----~~~~~~i  108 (163)
T cd00880          44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRA---------DEEEEK--LLELLR----ERGKPVL  108 (163)
T ss_pred             CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCC---------CHHHHH--HHHHHH----hcCCeEE
Confidence            6789999999987654       34556889999999999985321         111111  222222    2368999


Q ss_pred             EEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHH
Q 018283          259 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK  338 (358)
Q Consensus       259 lv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~  338 (358)
                      +++||.|+..+.                       ........  ......         ......++.+||+++.|+.+
T Consensus       109 vv~nK~D~~~~~-----------------------~~~~~~~~--~~~~~~---------~~~~~~~~~~sa~~~~~v~~  154 (163)
T cd00880         109 LVLNKIDLLPEE-----------------------EEEELLEL--RLLILL---------LLLGLPVIAVSALTGEGIDE  154 (163)
T ss_pred             EEEEccccCChh-----------------------hHHHHHHH--HHhhcc---------cccCCceEEEeeeccCCHHH
Confidence            999999986431                       11111110  000000         12345678899999999999


Q ss_pred             HHHHHHHH
Q 018283          339 TFKLVDET  346 (358)
Q Consensus       339 vf~~i~~~  346 (358)
                      +++.+.+.
T Consensus       155 l~~~l~~~  162 (163)
T cd00880         155 LREALIEA  162 (163)
T ss_pred             HHHHHHhh
Confidence            99988764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.30  E-value=5.4e-11  Score=108.80  Aligned_cols=157  Identities=15%  Similarity=0.137  Sum_probs=92.8

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  246 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i  246 (358)
                      .|.......+      ..++.++.+|||+|+..|...|..+++.++++|+|+|.++         ...  .....+++.+
T Consensus        50 ~ti~~~~~~~------~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~---------g~~--~~~~~~~~~~  112 (237)
T cd04168          50 ITIFSAVASF------QWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVE---------GVQ--AQTRILWRLL  112 (237)
T ss_pred             CceeeeeEEE------EECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCC---------CCC--HHHHHHHHHH
Confidence            3444444555      5678899999999999999999999999999999999752         111  1233344433


Q ss_pred             HcCCCCCCCcEEEEeeCCCchhhh-----------hccCCCcccccccccccCCCC----cccHHHHHHHHHHHHHHHhh
Q 018283          247 LKQPCFEKTSFMLFLNKFDIFEKK-----------VLKVPLNVCEWFKDYQPVSTG----KQEIENAYEFVKKKFEELYF  311 (358)
Q Consensus       247 ~~~~~~~~~~iilv~NK~Dl~~ek-----------i~~~~l~~~~~f~~y~~~~~g----~~~~~~~~~~i~~~f~~~~~  311 (358)
                      ..    .+.|+++|+||+|+..+.           +...++-..  .|-+......    +...-+++.-.-+...+.+.
T Consensus       113 ~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl  186 (237)
T cd04168         113 RK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQ--KVGLAPNICETNEIDDEFWETLAEGDDELLEKYL  186 (237)
T ss_pred             HH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEE--CCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHh
Confidence            22    267999999999987421           111110000  1111000000    12233333333445555554


Q ss_pred             hcCCCC------------CCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283          312 QSTAPD------------RVDRVFKIYRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       312 ~~~~~~------------~~~~~~~~~~tSA~d~~ni~~vf~~i~~~  346 (358)
                      ......            ...+-+..+..||..+.+++.+++.+.+.
T Consensus       187 ~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~  233 (237)
T cd04168         187 EGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKL  233 (237)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHh
Confidence            322211            02344567778999999999999988764

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.30  E-value=2.6e-11  Score=127.48  Aligned_cols=111  Identities=19%  Similarity=0.214  Sum_probs=71.8

Q ss_pred             cccceEEEEEecCCCch--------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRN--------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~--------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ...+..+.+|||+|++.        +...+..+++.+|++|||+|.++         .......  .+...+ ..   .+
T Consensus       319 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~---------~~~~~d~--~i~~~L-r~---~~  383 (712)
T PRK09518        319 EWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQV---------GLTSTDE--RIVRML-RR---AG  383 (712)
T ss_pred             EECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCC---------CCCHHHH--HHHHHH-Hh---cC
Confidence            34567899999999863        45667778999999999999741         1111111  222222 21   36


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      +|+++|+||+|+....                         ....+     |..+     .   -.   ..+.+||+++.
T Consensus       384 ~pvIlV~NK~D~~~~~-------------------------~~~~~-----~~~l-----g---~~---~~~~iSA~~g~  422 (712)
T PRK09518        384 KPVVLAVNKIDDQASE-------------------------YDAAE-----FWKL-----G---LG---EPYPISAMHGR  422 (712)
T ss_pred             CCEEEEEECcccccch-------------------------hhHHH-----HHHc-----C---CC---CeEEEECCCCC
Confidence            8999999999974310                         00111     1111     0   01   13579999999


Q ss_pred             hHHHHHHHHHHHHHH
Q 018283          335 LVKKTFKLVDETLRR  349 (358)
Q Consensus       335 ni~~vf~~i~~~i~~  349 (358)
                      ||.++|+++.+.+..
T Consensus       423 GI~eLl~~i~~~l~~  437 (712)
T PRK09518        423 GVGDLLDEALDSLKV  437 (712)
T ss_pred             CchHHHHHHHHhccc
Confidence            999999999988754

>PRK00089 era GTPase Era; Reviewed

Probab=99.29  E-value=3.7e-11  Score=113.26  Aligned_cols=112  Identities=23%  Similarity=0.287  Sum_probs=66.9

Q ss_pred             cceEEEEEecCCCchhh--------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc
Q 018283          185 SGEVYRLFDVGGQRNER--------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS  256 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r--------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~  256 (358)
                      .+..+.+|||+|....+        ..+..++.++|+++||+|.++            .+.+....+...+..   .+.|
T Consensus        51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~------------~~~~~~~~i~~~l~~---~~~p  115 (292)
T PRK00089         51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADE------------KIGPGDEFILEKLKK---VKTP  115 (292)
T ss_pred             CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCC------------CCChhHHHHHHHHhh---cCCC
Confidence            34789999999975432        234446789999999999853            111112222222221   2579


Q ss_pred             EEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhH
Q 018283          257 FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLV  336 (358)
Q Consensus       257 iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni  336 (358)
                      +++|+||+|+...+                      ....+..+.    +...          .....++.+||+++.|+
T Consensus       116 vilVlNKiDl~~~~----------------------~~l~~~~~~----l~~~----------~~~~~i~~iSA~~~~gv  159 (292)
T PRK00089        116 VILVLNKIDLVKDK----------------------EELLPLLEE----LSEL----------MDFAEIVPISALKGDNV  159 (292)
T ss_pred             EEEEEECCcCCCCH----------------------HHHHHHHHH----HHhh----------CCCCeEEEecCCCCCCH
Confidence            99999999996321                      011111111    1111          01234567888888888


Q ss_pred             HHHHHHHHHHH
Q 018283          337 KKTFKLVDETL  347 (358)
Q Consensus       337 ~~vf~~i~~~i  347 (358)
                      .++++.+.+.+
T Consensus       160 ~~L~~~L~~~l  170 (292)
T PRK00089        160 DELLDVIAKYL  170 (292)
T ss_pred             HHHHHHHHHhC
Confidence            88888877665

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.29  E-value=3e-11  Score=119.17  Aligned_cols=116  Identities=18%  Similarity=0.182  Sum_probs=68.9

Q ss_pred             ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccc-cchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283          186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQ-KNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  264 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~-~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~  264 (358)
                      ...+.+|||+|++.|..-...-...++++|+|+|.++        .. .....+.+..+..      ....|+++++||+
T Consensus        84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~--------~~~~~~t~~~l~~l~~------~~i~~iiVVlNK~  149 (411)
T PRK04000         84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANE--------PCPQPQTKEHLMALDI------IGIKNIVIVQNKI  149 (411)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC--------CCCChhHHHHHHHHHH------cCCCcEEEEEEee
Confidence            3688999999999886644444456799999999752        11 1111222222221      1224789999999


Q ss_pred             CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283          265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD  344 (358)
Q Consensus       265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~  344 (358)
                      |+..+....                   ...++...++...             ....+.++.+||++++|+.++|+.+.
T Consensus       150 Dl~~~~~~~-------------------~~~~~i~~~l~~~-------------~~~~~~ii~vSA~~g~gI~~L~~~L~  197 (411)
T PRK04000        150 DLVSKERAL-------------------ENYEQIKEFVKGT-------------VAENAPIIPVSALHKVNIDALIEAIE  197 (411)
T ss_pred             ccccchhHH-------------------HHHHHHHHHhccc-------------cCCCCeEEEEECCCCcCHHHHHHHHH
Confidence            985421000                   0011112211100             01135678899999999999999988


Q ss_pred             HHH
Q 018283          345 ETL  347 (358)
Q Consensus       345 ~~i  347 (358)
                      +.+
T Consensus       198 ~~l  200 (411)
T PRK04000        198 EEI  200 (411)
T ss_pred             HhC
Confidence            765

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.28  E-value=3.8e-11  Score=119.21  Aligned_cols=110  Identities=17%  Similarity=0.156  Sum_probs=71.5

Q ss_pred             cccceEEEEEecCCC--------chhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQ--------RNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq--------~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ...+..+.+|||+|.        +.++..+..++++++++|||+|.++        .....-.+...++..       .+
T Consensus        43 ~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~--------~~~~~d~~i~~~l~~-------~~  107 (429)
T TIGR03594        43 EWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGRE--------GLTPEDEEIAKWLRK-------SG  107 (429)
T ss_pred             EECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCC--------CCCHHHHHHHHHHHH-------hC
Confidence            345567999999996        5566778889999999999999741        111111122233322       25


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      +|+++|+||+|+.....                      ...+        |..+     +      .-.++.+||+.+.
T Consensus       108 ~piilVvNK~D~~~~~~----------------------~~~~--------~~~l-----g------~~~~~~vSa~~g~  146 (429)
T TIGR03594       108 KPVILVANKIDGKKEDA----------------------VAAE--------FYSL-----G------FGEPIPISAEHGR  146 (429)
T ss_pred             CCEEEEEECccCCcccc----------------------cHHH--------HHhc-----C------CCCeEEEeCCcCC
Confidence            79999999999854210                      0111        1111     0      0135789999999


Q ss_pred             hHHHHHHHHHHHHH
Q 018283          335 LVKKTFKLVDETLR  348 (358)
Q Consensus       335 ni~~vf~~i~~~i~  348 (358)
                      ++.++++.+.+.+-
T Consensus       147 gv~~ll~~i~~~l~  160 (429)
T TIGR03594       147 GIGDLLDAILELLP  160 (429)
T ss_pred             ChHHHHHHHHHhcC
Confidence            99999999887663

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.28  E-value=6.5e-11  Score=100.70  Aligned_cols=111  Identities=15%  Similarity=0.184  Sum_probs=64.7

Q ss_pred             EEEEEecCCC----------chhhhhHhhhhcC---CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          188 VYRLFDVGGQ----------RNERRKWIHLFEG---VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       188 ~l~i~D~~Gq----------~~~r~~w~~y~~~---~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      .+.+|||+|.          +.+...+..|+..   ++++++++|....        ......+...++...       +
T Consensus        46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~--------~~~~~~~~~~~l~~~-------~  110 (170)
T cd01876          46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHG--------PTEIDLEMLDWLEEL-------G  110 (170)
T ss_pred             eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcC--------CCHhHHHHHHHHHHc-------C
Confidence            8899999994          3456666677764   5678889886321        111112223333221       4


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      .|+++++||+|+.......                   ........++..    .          .....++.+||+++.
T Consensus       111 ~~vi~v~nK~D~~~~~~~~-------------------~~~~~~~~~l~~----~----------~~~~~~~~~Sa~~~~  157 (170)
T cd01876         111 IPFLVVLTKADKLKKSELA-------------------KALKEIKKELKL----F----------EIDPPIILFSSLKGQ  157 (170)
T ss_pred             CCEEEEEEchhcCChHHHH-------------------HHHHHHHHHHHh----c----------cCCCceEEEecCCCC
Confidence            7999999999985321100                   001111111111    0          112346689999999


Q ss_pred             hHHHHHHHHHHH
Q 018283          335 LVKKTFKLVDET  346 (358)
Q Consensus       335 ni~~vf~~i~~~  346 (358)
                      ++.++++.+.+.
T Consensus       158 ~~~~l~~~l~~~  169 (170)
T cd01876         158 GIDELRALIEKW  169 (170)
T ss_pred             CHHHHHHHHHHh
Confidence            999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.26  E-value=3.8e-11  Score=123.22  Aligned_cols=110  Identities=17%  Similarity=0.106  Sum_probs=73.3

Q ss_pred             cccceEEEEEecCCCchhhhh------Hhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNERRK------WIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~------w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ..++..+++|||+|++++...      +..|+.  ++|++++|+|.++             ++..+.+..++..    .+
T Consensus        37 ~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~-------------ler~l~l~~ql~~----~~   99 (591)
T TIGR00437        37 GFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASN-------------LERNLYLTLQLLE----LG   99 (591)
T ss_pred             EECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCc-------------chhhHHHHHHHHh----cC
Confidence            345567899999999887654      566654  7899999999752             1223444444433    26


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      +|+++++||+|+.+++-                     ... + .+.+.++               ..+.++.|||++++
T Consensus       100 ~PiIIVlNK~Dl~~~~~---------------------i~~-d-~~~L~~~---------------lg~pvv~tSA~tg~  141 (591)
T TIGR00437       100 IPMILALNLVDEAEKKG---------------------IRI-D-EEKLEER---------------LGVPVVPTSATEGR  141 (591)
T ss_pred             CCEEEEEehhHHHHhCC---------------------Chh-h-HHHHHHH---------------cCCCEEEEECCCCC
Confidence            89999999999865321                     000 0 1111111               12457889999999


Q ss_pred             hHHHHHHHHHHHH
Q 018283          335 LVKKTFKLVDETL  347 (358)
Q Consensus       335 ni~~vf~~i~~~i  347 (358)
                      |++++|+.+.+..
T Consensus       142 Gi~eL~~~i~~~~  154 (591)
T TIGR00437       142 GIERLKDAIRKAI  154 (591)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.26  E-value=1.5e-10  Score=113.18  Aligned_cols=120  Identities=14%  Similarity=0.193  Sum_probs=72.3

Q ss_pred             eEEEEEecCCCchh-------hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHc-CCCCCCCcEE
Q 018283          187 EVYRLFDVGGQRNE-------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK-QPCFEKTSFM  258 (358)
Q Consensus       187 ~~l~i~D~~Gq~~~-------r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~-~~~~~~~~ii  258 (358)
                      ..+.++||+|...-       ......++++++++++|+|++.++       ..+.+.+...+.+.+.. .+.+.+.|++
T Consensus       207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~-------~~d~~e~~~~l~~eL~~~~~~L~~kP~I  279 (390)
T PRK12298        207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPID-------GSDPVENARIIINELEKYSPKLAEKPRW  279 (390)
T ss_pred             cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCccc-------ccChHHHHHHHHHHHHhhhhhhcCCCEE
Confidence            46899999998531       122334678999999999986432       12233333334444332 2334568999


Q ss_pred             EEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHH
Q 018283          259 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK  338 (358)
Q Consensus       259 lv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~  338 (358)
                      ||+||+|+..+.                       .+.+.++.+.+.+             .....++.+||+++++|.+
T Consensus       280 lVlNKiDl~~~~-----------------------el~~~l~~l~~~~-------------~~~~~Vi~ISA~tg~GIde  323 (390)
T PRK12298        280 LVFNKIDLLDEE-----------------------EAEERAKAIVEAL-------------GWEGPVYLISAASGLGVKE  323 (390)
T ss_pred             EEEeCCccCChH-----------------------HHHHHHHHHHHHh-------------CCCCCEEEEECCCCcCHHH
Confidence            999999985321                       1111122111111             0011356789999999999


Q ss_pred             HHHHHHHHHHH
Q 018283          339 TFKLVDETLRR  349 (358)
Q Consensus       339 vf~~i~~~i~~  349 (358)
                      +++.|.+.+-.
T Consensus       324 Ll~~I~~~L~~  334 (390)
T PRK12298        324 LCWDLMTFIEE  334 (390)
T ss_pred             HHHHHHHHhhh
Confidence            99999887643

>cd04169 RF3 RF3 subfamily

Probab=99.24  E-value=9.6e-11  Score=109.02  Aligned_cols=81  Identities=17%  Similarity=0.261  Sum_probs=57.7

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  246 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i  246 (358)
                      .+.......+      ..++..+++|||+|+..|...+..+++.++++|+|+|.++         ...  .....+++..
T Consensus        57 ~si~~~~~~~------~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~---------g~~--~~~~~i~~~~  119 (267)
T cd04169          57 ISVTSSVMQF------EYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAK---------GVE--PQTRKLFEVC  119 (267)
T ss_pred             CCeEEEEEEE------eeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCC---------Ccc--HHHHHHHHHH
Confidence            3444445566      6788999999999999998878888999999999999752         111  1112333322


Q ss_pred             HcCCCCCCCcEEEEeeCCCchh
Q 018283          247 LKQPCFEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       247 ~~~~~~~~~~iilv~NK~Dl~~  268 (358)
                       ..   .++|+++++||+|+..
T Consensus       120 -~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169         120 -RL---RGIPIITFINKLDREG  137 (267)
T ss_pred             -Hh---cCCCEEEEEECCccCC
Confidence             21   3689999999999854

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.21  E-value=2.3e-10  Score=117.92  Aligned_cols=115  Identities=17%  Similarity=0.189  Sum_probs=71.4

Q ss_pred             ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc-EEEEeeCC
Q 018283          186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFLNKF  264 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-iilv~NK~  264 (358)
                      +..+.+|||+|++.|.+.....+.++|++++|+|..+           .-+..+.+.+..+ ..  . ++| +++++||+
T Consensus        50 g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~e-----------g~~~qT~ehl~il-~~--l-gi~~iIVVlNKi  114 (614)
T PRK10512         50 GRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDD-----------GVMAQTREHLAIL-QL--T-GNPMLTVALTKA  114 (614)
T ss_pred             CcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCC-----------CCcHHHHHHHHHH-HH--c-CCCeEEEEEECC
Confidence            4468999999999997777778899999999999731           1112222222222 21  1 244 68999999


Q ss_pred             CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283          265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD  344 (358)
Q Consensus       265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~  344 (358)
                      |+.++.                       ..+...+-+.+.+....         -....++.+||++++|+.++++.+.
T Consensus       115 Dlv~~~-----------------------~~~~v~~ei~~~l~~~~---------~~~~~ii~VSA~tG~gI~~L~~~L~  162 (614)
T PRK10512        115 DRVDEA-----------------------RIAEVRRQVKAVLREYG---------FAEAKLFVTAATEGRGIDALREHLL  162 (614)
T ss_pred             ccCCHH-----------------------HHHHHHHHHHHHHHhcC---------CCCCcEEEEeCCCCCCCHHHHHHHH
Confidence            985321                       11111222222222110         0124577899999999999999987


Q ss_pred             HHH
Q 018283          345 ETL  347 (358)
Q Consensus       345 ~~i  347 (358)
                      +..
T Consensus       163 ~~~  165 (614)
T PRK10512        163 QLP  165 (614)
T ss_pred             Hhh
Confidence            654

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.21  E-value=3.7e-10  Score=115.74  Aligned_cols=64  Identities=19%  Similarity=0.207  Sum_probs=47.4

Q ss_pred             EEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCch
Q 018283          189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF  267 (358)
Q Consensus       189 l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~  267 (358)
                      +.+|||+||+.|+..|..++..+|++|+|+|.++        .-.....+.+.++.   .    .++|+++++||+|+.
T Consensus        73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~--------g~~~qt~e~i~~~~---~----~~vpiIvviNK~D~~  136 (586)
T PRK04004         73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINE--------GFQPQTIEAINILK---R----RKTPFVVAANKIDRI  136 (586)
T ss_pred             EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCC--------CCCHhHHHHHHHHH---H----cCCCEEEEEECcCCc
Confidence            7899999999999999999999999999999752        01111122222221   1    368999999999985

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.20  E-value=1.4e-09  Score=96.58  Aligned_cols=70  Identities=17%  Similarity=0.240  Sum_probs=48.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc-EEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-iilv~  261 (358)
                      ..++..+.+.||+|+..+..-...-...+|++|+|+|.+.         ...  ......+..+...    +.| ++++.
T Consensus        61 ~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~---------g~~--~~~~~~~~~~~~~----~~~~iIvvi  125 (195)
T cd01884          61 ETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATD---------GPM--PQTREHLLLARQV----GVPYIVVFL  125 (195)
T ss_pred             cCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCC---------CCc--HHHHHHHHHHHHc----CCCcEEEEE
Confidence            5567788999999998886666666789999999999741         111  1222333333221    355 78999


Q ss_pred             eCCCch
Q 018283          262 NKFDIF  267 (358)
Q Consensus       262 NK~Dl~  267 (358)
                      ||+|+.
T Consensus       126 NK~D~~  131 (195)
T cd01884         126 NKADMV  131 (195)
T ss_pred             eCCCCC
Confidence            999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK13351 elongation factor G; Reviewed

Probab=99.20  E-value=2.8e-10  Score=119.47  Aligned_cols=83  Identities=11%  Similarity=0.063  Sum_probs=60.6

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      ..|.+.....+      ...+..+.+|||+|+..+...|..+++.+|++|+|+|.++          .... .....+..
T Consensus        58 ~~ti~~~~~~~------~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~----------~~~~-~~~~~~~~  120 (687)
T PRK13351         58 GITIESAATSC------DWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVT----------GVQP-QTETVWRQ  120 (687)
T ss_pred             CCCcccceEEE------EECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCC----------CCCH-HHHHHHHH
Confidence            44555444555      5678899999999999999999999999999999999752          1111 12334443


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhh
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEK  269 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~e  269 (358)
                      +..    .++|+++|+||+|+...
T Consensus       121 ~~~----~~~p~iiviNK~D~~~~  140 (687)
T PRK13351        121 ADR----YGIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHh----cCCCEEEEEECCCCCCC
Confidence            322    26899999999998864

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.18  E-value=6.5e-10  Score=103.56  Aligned_cols=71  Identities=15%  Similarity=0.201  Sum_probs=53.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ..++..+.+|||+|+..+...+..+++.++++|+|+|.+.-          .. ......+..+..    .++|+++|+|
T Consensus        60 ~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g----------~~-~~~~~~~~~~~~----~~~p~iivvN  124 (268)
T cd04170          60 EWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSG----------VE-VGTEKLWEFADE----AGIPRIIFIN  124 (268)
T ss_pred             EECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCC----------CC-HHHHHHHHHHHH----cCCCEEEEEE
Confidence            55678899999999999988999999999999999997521          11 122333433322    2579999999


Q ss_pred             CCCchh
Q 018283          263 KFDIFE  268 (358)
Q Consensus       263 K~Dl~~  268 (358)
                      |+|+.+
T Consensus       125 K~D~~~  130 (268)
T cd04170         125 KMDRER  130 (268)
T ss_pred             CCccCC
Confidence            999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.17  E-value=3.2e-10  Score=119.38  Aligned_cols=69  Identities=19%  Similarity=0.139  Sum_probs=48.1

Q ss_pred             cccceEEEEEecCCCchhhh----------hHhhhh--cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC
Q 018283          183 KKSGEVYRLFDVGGQRNERR----------KWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP  250 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~----------~w~~y~--~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~  250 (358)
                      ...+.++++||++|+.++..          .+..|+  ..+|++|+|+|.++          .+   ..+.++..+... 
T Consensus        46 ~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~----------le---r~l~l~~ql~e~-  111 (772)
T PRK09554         46 STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN----------LE---RNLYLTLQLLEL-  111 (772)
T ss_pred             EcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCc----------ch---hhHHHHHHHHHc-
Confidence            56678899999999987643          234454  48999999999742          12   223344444332 


Q ss_pred             CCCCCcEEEEeeCCCchh
Q 018283          251 CFEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       251 ~~~~~~iilv~NK~Dl~~  268 (358)
                         +.|+++++||+|+.+
T Consensus       112 ---giPvIvVlNK~Dl~~  126 (772)
T PRK09554        112 ---GIPCIVALNMLDIAE  126 (772)
T ss_pred             ---CCCEEEEEEchhhhh
Confidence               689999999999864

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.15  E-value=8.8e-10  Score=99.95  Aligned_cols=70  Identities=16%  Similarity=0.210  Sum_probs=46.8

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      .++..+.+.|++|++.+.+-......  .+|++++|+|...         ..  .......+..+..    .+.|++++.
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~---------g~--~~~d~~~l~~l~~----~~ip~ivvv  145 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANA---------GI--IGMTKEHLGLALA----LNIPVFVVV  145 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCC---------CC--cHHHHHHHHHHHH----cCCCEEEEE
Confidence            34668899999999988655444443  6899999999631         11  1223333433332    257999999


Q ss_pred             eCCCchh
Q 018283          262 NKFDIFE  268 (358)
Q Consensus       262 NK~Dl~~  268 (358)
                      ||+|+..
T Consensus       146 NK~D~~~  152 (224)
T cd04165         146 TKIDLAP  152 (224)
T ss_pred             ECccccC
Confidence            9999854

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK12736 elongation factor Tu; Reviewed

Probab=99.15  E-value=1.9e-09  Score=105.83  Aligned_cols=70  Identities=20%  Similarity=0.286  Sum_probs=47.1

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc-EEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-iilv~  261 (358)
                      ..+...+.++||+|++.|.+....-...+|++|+|+|.++           .-...+.+.+..+...    ++| ++++.
T Consensus        71 ~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~-----------g~~~~t~~~~~~~~~~----g~~~~Ivvi  135 (394)
T PRK12736         71 ETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD-----------GPMPQTREHILLARQV----GVPYLVVFL  135 (394)
T ss_pred             cCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC-----------CCchhHHHHHHHHHHc----CCCEEEEEE
Confidence            4456788999999999886655555678899999999631           1112223333333221    466 78899


Q ss_pred             eCCCch
Q 018283          262 NKFDIF  267 (358)
Q Consensus       262 NK~Dl~  267 (358)
                      ||+|+.
T Consensus       136 NK~D~~  141 (394)
T PRK12736        136 NKVDLV  141 (394)
T ss_pred             EecCCc
Confidence            999985

>cd04167 Snu114p Snu114p subfamily

Probab=99.14  E-value=4.7e-10  Score=100.87  Aligned_cols=69  Identities=17%  Similarity=0.232  Sum_probs=51.6

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      .+.+.+.+|||+|+..+...+..++..++++|+|+|.+.-          ... ....++.....    .+.|+++++||
T Consensus        68 ~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~----------~~~-~~~~~~~~~~~----~~~p~iiviNK  132 (213)
T cd04167          68 GKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEG----------VTS-NTERLIRHAIL----EGLPIVLVINK  132 (213)
T ss_pred             CCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCC----------CCH-HHHHHHHHHHH----cCCCEEEEEEC
Confidence            4568899999999999999999999999999999997521          111 12233333322    24799999999


Q ss_pred             CCch
Q 018283          264 FDIF  267 (358)
Q Consensus       264 ~Dl~  267 (358)
                      +|+.
T Consensus       133 ~D~~  136 (213)
T cd04167         133 IDRL  136 (213)
T ss_pred             cccC
Confidence            9985

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.12  E-value=1.6e-09  Score=105.26  Aligned_cols=80  Identities=26%  Similarity=0.327  Sum_probs=53.3

Q ss_pred             cCceeeEeeccCCCCcccceEEEEEecCCCchhh--------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHH
Q 018283          168 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNER--------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET  239 (358)
Q Consensus       168 T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r--------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~  239 (358)
                      |-.+.+..+      +.+++.+++.||+|-+.-.        .+...-.+.||.++||+|.+..         ..  ...
T Consensus       252 TRDviee~i------~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~---------~~--~~d  314 (454)
T COG0486         252 TRDVIEEDI------NLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQP---------LD--KED  314 (454)
T ss_pred             ccceEEEEE------EECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC---------Cc--hhh
Confidence            334556677      8899999999999997431        1223356799999999997531         01  111


Q ss_pred             HHHHHHHHcCCCCCCCcEEEEeeCCCchhh
Q 018283          240 KELFDWVLKQPCFEKTSFMLFLNKFDIFEK  269 (358)
Q Consensus       240 ~~~~~~i~~~~~~~~~~iilv~NK~Dl~~e  269 (358)
                      ...+.     ....+.|+++|.||.||..+
T Consensus       315 ~~~~~-----~~~~~~~~i~v~NK~DL~~~  339 (454)
T COG0486         315 LALIE-----LLPKKKPIIVVLNKADLVSK  339 (454)
T ss_pred             HHHHH-----hcccCCCEEEEEechhcccc
Confidence            22222     12246899999999999764

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.11  E-value=2.3e-09  Score=95.28  Aligned_cols=123  Identities=13%  Similarity=0.064  Sum_probs=68.9

Q ss_pred             eEEEEEecCCCchhhhhHhhh-----hcCCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEE
Q 018283          187 EVYRLFDVGGQRNERRKWIHL-----FEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLF  260 (358)
Q Consensus       187 ~~l~i~D~~Gq~~~r~~w~~y-----~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv  260 (358)
                      ..+.+||++|.......-..|     +.+++.+|+|.|-           .   +.+. ..+++.+...    +.|+++|
T Consensus        52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~-----------~---~~~~d~~~~~~l~~~----~~~~ilV  113 (197)
T cd04104          52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST-----------R---FSSNDVKLAKAIQCM----GKKFYFV  113 (197)
T ss_pred             CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC-----------C---CCHHHHHHHHHHHHh----CCCEEEE
Confidence            468999999985432222233     6788888887541           1   1112 2233333221    5799999


Q ss_pred             eeCCCchhh--hhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC--hhhH
Q 018283          261 LNKFDIFEK--KVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD--PKLV  336 (358)
Q Consensus       261 ~NK~Dl~~e--ki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d--~~ni  336 (358)
                      +||+|+...  .... +              ++ .+.++.++.+.....+.......     ..-.+|.+|+.+  +-++
T Consensus       114 ~nK~D~~~~~~~~~~-~--------------~~-~~~~~~l~~i~~~~~~~~~~~~~-----~~p~v~~vS~~~~~~~~~  172 (197)
T cd04104         114 RTKVDRDLSNEQRSK-P--------------RS-FNREQVLQEIRDNCLENLQEAGV-----SEPPVFLVSNFDPSDYDF  172 (197)
T ss_pred             Eecccchhhhhhccc-c--------------cc-ccHHHHHHHHHHHHHHHHHHcCC-----CCCCEEEEeCCChhhcCh
Confidence            999998432  1100 0              01 23455666666666655532111     112467789984  5677


Q ss_pred             HHHHHHHHHHHH
Q 018283          337 KKTFKLVDETLR  348 (358)
Q Consensus       337 ~~vf~~i~~~i~  348 (358)
                      ..+.+.+...+-
T Consensus       173 ~~l~~~~~~~l~  184 (197)
T cd04104         173 PKLRETLLKDLP  184 (197)
T ss_pred             HHHHHHHHHHhh
Confidence            777777666654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.10  E-value=2.5e-09  Score=96.77  Aligned_cols=70  Identities=17%  Similarity=0.192  Sum_probs=53.3

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      .++..+.+|||+|++.|......+++.+|++|+|+|.++         .  -...+...+.....    .++|+++++||
T Consensus        70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~---------g--~~~~t~~~l~~~~~----~~~p~ilviNK  134 (222)
T cd01885          70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVE---------G--VCVQTETVLRQALK----ERVKPVLVINK  134 (222)
T ss_pred             CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCC---------C--CCHHHHHHHHHHHH----cCCCEEEEEEC
Confidence            457899999999999999999999999999999999742         1  11223344444433    25799999999


Q ss_pred             CCchh
Q 018283          264 FDIFE  268 (358)
Q Consensus       264 ~Dl~~  268 (358)
                      +|+..
T Consensus       135 iD~~~  139 (222)
T cd01885         135 IDRLI  139 (222)
T ss_pred             CCcch
Confidence            99863

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.08  E-value=1.5e-09  Score=101.07  Aligned_cols=71  Identities=10%  Similarity=0.027  Sum_probs=53.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ..++..+.+|||+|+..+...|..+++.++++|+|+|.++-         ..  ......+..+..    .++|+++|.|
T Consensus        60 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g---------~~--~~t~~~~~~~~~----~~~p~ivviN  124 (270)
T cd01886          60 FWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAG---------VE--PQTETVWRQADR----YNVPRIAFVN  124 (270)
T ss_pred             EECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCC---------CC--HHHHHHHHHHHH----cCCCEEEEEE
Confidence            56788999999999999999999999999999999997521         11  112333443322    2579999999


Q ss_pred             CCCchh
Q 018283          263 KFDIFE  268 (358)
Q Consensus       263 K~Dl~~  268 (358)
                      |+|+.+
T Consensus       125 K~D~~~  130 (270)
T cd01886         125 KMDRTG  130 (270)
T ss_pred             CCCCCC
Confidence            999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK13768 GTPase; Provisional

Probab=99.06  E-value=2.4e-09  Score=98.89  Aligned_cols=136  Identities=18%  Similarity=0.200  Sum_probs=72.3

Q ss_pred             eEEEEEecCCCch---hhhhHhhhhcC-----CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 018283          187 EVYRLFDVGGQRN---ERRKWIHLFEG-----VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM  258 (358)
Q Consensus       187 ~~l~i~D~~Gq~~---~r~~w~~y~~~-----~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ii  258 (358)
                      ..+.+||++|+..   ++..|..+++.     +++++||+|.+..       .....+.. ..++.......  .+.|++
T Consensus        97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~-------~~~~d~~~-~~~l~~~~~~~--~~~~~i  166 (253)
T PRK13768         97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLA-------KTPSDFVS-LLLLALSVQLR--LGLPQI  166 (253)
T ss_pred             CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHh-------CCHHHHHH-HHHHHHHHHHH--cCCCEE
Confidence            3689999999966   47777666554     7899999997421       11112111 12222111111  268999


Q ss_pred             EEeeCCCchhhhhccCCCcccccccc------cccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283          259 LFLNKFDIFEKKVLKVPLNVCEWFKD------YQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD  332 (358)
Q Consensus       259 lv~NK~Dl~~eki~~~~l~~~~~f~~------y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d  332 (358)
                      +++||+|+..+.......   +++.+      ......| .. .+...-+.+.+...          .....++.+||++
T Consensus       167 ~v~nK~D~~~~~~~~~~~---~~l~~~~~~~~~l~~~~~-~~-~~~~~~~~~~i~~~----------~~~~~vi~iSa~~  231 (253)
T PRK13768        167 PVLNKADLLSEEELERIL---KWLEDPEYLLEELKLEKG-LQ-GLLSLELLRALEET----------GLPVRVIPVSAKT  231 (253)
T ss_pred             EEEEhHhhcCchhHHHHH---HHHhCHHHHHHHHhcccc-hH-HHHHHHHHHHHHHH----------CCCCcEEEEECCC
Confidence            999999986431100000   00100      0000001 00 11222222223322          1123567799999


Q ss_pred             hhhHHHHHHHHHHHH
Q 018283          333 PKLVKKTFKLVDETL  347 (358)
Q Consensus       333 ~~ni~~vf~~i~~~i  347 (358)
                      +++++++.+++.+.+
T Consensus       232 ~~gl~~L~~~I~~~l  246 (253)
T PRK13768        232 GEGFDELYAAIQEVF  246 (253)
T ss_pred             CcCHHHHHHHHHHHc
Confidence            999999999987765

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.06  E-value=1.3e-09  Score=110.32  Aligned_cols=71  Identities=15%  Similarity=0.258  Sum_probs=53.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ..++..+++|||+|+..|......+++.++++|+|+|.++         ...  .....++... .   ..++|+++|+|
T Consensus        75 ~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~---------gv~--~~t~~l~~~~-~---~~~iPiiv~iN  139 (526)
T PRK00741         75 PYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAK---------GVE--PQTRKLMEVC-R---LRDTPIFTFIN  139 (526)
T ss_pred             EECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCC---------CCC--HHHHHHHHHH-H---hcCCCEEEEEE
Confidence            6678999999999999998888889999999999999752         111  1123334332 2   13689999999


Q ss_pred             CCCchh
Q 018283          263 KFDIFE  268 (358)
Q Consensus       263 K~Dl~~  268 (358)
                      |+|+..
T Consensus       140 K~D~~~  145 (526)
T PRK00741        140 KLDRDG  145 (526)
T ss_pred             CCcccc
Confidence            999864

>PLN03126 Elongation factor Tu; Provisional

Probab=99.05  E-value=7.3e-09  Score=103.76  Aligned_cols=71  Identities=20%  Similarity=0.241  Sum_probs=48.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc-EEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-iilv~  261 (358)
                      ..++..+.++|++|++.|-+-...-...+|++|+|+|..+           .-.....+.+..+..    .++| ++++.
T Consensus       140 ~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~-----------G~~~qt~e~~~~~~~----~gi~~iIvvv  204 (478)
T PLN03126        140 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD-----------GPMPQTKEHILLAKQ----VGVPNMVVFL  204 (478)
T ss_pred             ecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCeEEEEE
Confidence            4566789999999999886666656678999999999631           112223333433322    1466 78899


Q ss_pred             eCCCchh
Q 018283          262 NKFDIFE  268 (358)
Q Consensus       262 NK~Dl~~  268 (358)
                      ||+|+..
T Consensus       205 NK~Dl~~  211 (478)
T PLN03126        205 NKQDQVD  211 (478)
T ss_pred             ecccccC
Confidence            9999853

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.05  E-value=9.3e-09  Score=101.09  Aligned_cols=71  Identities=18%  Similarity=0.304  Sum_probs=45.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcE-EEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF-MLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~i-ilv~  261 (358)
                      ..++..+.+|||+|++.|.+....-...+|++|+|+|..+           .-...+.+.+..+...    ++|. ++++
T Consensus        71 ~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~-----------g~~~qt~e~l~~~~~~----gi~~iIvvv  135 (394)
T TIGR00485        71 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATD-----------GPMPQTREHILLARQV----GVPYIVVFL  135 (394)
T ss_pred             cCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHHc----CCCEEEEEE
Confidence            5566789999999999886544444556799999999741           1112223333333221    4554 5789


Q ss_pred             eCCCchh
Q 018283          262 NKFDIFE  268 (358)
Q Consensus       262 NK~Dl~~  268 (358)
                      ||+|+..
T Consensus       136 NK~Dl~~  142 (394)
T TIGR00485       136 NKCDMVD  142 (394)
T ss_pred             EecccCC
Confidence            9999853

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.03  E-value=7.9e-09  Score=101.59  Aligned_cols=70  Identities=17%  Similarity=0.278  Sum_probs=45.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEE-EEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM-LFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ii-lv~  261 (358)
                      ..++..+.++||+|++.|.+-...-..++|++++|+|..+        .-..   ...+.+..+..    .++|.+ ++.
T Consensus        71 ~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~--------g~~~---qt~e~l~~~~~----~gi~~iivvv  135 (396)
T PRK12735         71 ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD--------GPMP---QTREHILLARQ----VGVPYIVVFL  135 (396)
T ss_pred             cCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC--------CCch---hHHHHHHHHHH----cCCCeEEEEE
Confidence            4456688999999998776555555678899999999741        1111   22233333222    246754 679


Q ss_pred             eCCCch
Q 018283          262 NKFDIF  267 (358)
Q Consensus       262 NK~Dl~  267 (358)
                      ||+|+.
T Consensus       136 NK~Dl~  141 (396)
T PRK12735        136 NKCDMV  141 (396)
T ss_pred             EecCCc
Confidence            999985

>TIGR00503 prfC peptide chain release factor 3

Probab=99.01  E-value=2.6e-09  Score=108.30  Aligned_cols=70  Identities=17%  Similarity=0.264  Sum_probs=51.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +.++..+.+|||+|+..|......+++.+|++|+|+|.+.         ...  .....+++ ++..   .++|+++|+|
T Consensus        76 ~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~---------gv~--~~t~~l~~-~~~~---~~~PiivviN  140 (527)
T TIGR00503        76 PYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAK---------GVE--TRTRKLME-VTRL---RDTPIFTFMN  140 (527)
T ss_pred             eeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCC---------CCC--HHHHHHHH-HHHh---cCCCEEEEEE
Confidence            6778999999999999888766678899999999999752         111  11223333 2222   3689999999


Q ss_pred             CCCch
Q 018283          263 KFDIF  267 (358)
Q Consensus       263 K~Dl~  267 (358)
                      |+|+.
T Consensus       141 KiD~~  145 (527)
T TIGR00503       141 KLDRD  145 (527)
T ss_pred             Ccccc
Confidence            99985

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.01  E-value=7.9e-09  Score=102.90  Aligned_cols=131  Identities=10%  Similarity=0.114  Sum_probs=77.5

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccc--cccccccccccchHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE--YDQTLFEDEQKNRMMETKELF  243 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~--~d~~~~~~~~~~~l~~~~~~~  243 (358)
                      .-|..+....|      ...+..+++.|++||+.|.+.....+..+|++|+|+|.++  |....   .......+.   +
T Consensus        70 GiTi~~~~~~~------~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~---~~~~qT~eh---~  137 (447)
T PLN00043         70 GITIDIALWKF------ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGI---SKDGQTREH---A  137 (447)
T ss_pred             CceEEEEEEEe------cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceeccc---CCCchHHHH---H
Confidence            34444445556      6678899999999999999998999999999999999752  10000   000222222   2


Q ss_pred             HHHHcCCCCCCC-cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCce
Q 018283          244 DWVLKQPCFEKT-SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRV  322 (358)
Q Consensus       244 ~~i~~~~~~~~~-~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~  322 (358)
                      ..+ ..   .++ +++++.||+|+....              |    .. ..+++..+-+...+.....       ....
T Consensus       138 ~~~-~~---~gi~~iIV~vNKmD~~~~~--------------~----~~-~~~~~i~~ei~~~l~~~g~-------~~~~  187 (447)
T PLN00043        138 LLA-FT---LGVKQMICCCNKMDATTPK--------------Y----SK-ARYDEIVKEVSSYLKKVGY-------NPDK  187 (447)
T ss_pred             HHH-HH---cCCCcEEEEEEcccCCchh--------------h----hH-HHHHHHHHHHHHHHHHcCC-------Cccc
Confidence            221 11   134 578899999975211              0    00 2233334444433332210       1123


Q ss_pred             EEEEEeeccChhhHHH
Q 018283          323 FKIYRTTALDPKLVKK  338 (358)
Q Consensus       323 ~~~~~tSA~d~~ni~~  338 (358)
                      +.+..+||++|+||.+
T Consensus       188 ~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        188 IPFVPISGFEGDNMIE  203 (447)
T ss_pred             ceEEEEeccccccccc
Confidence            6678899999999853

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.99  E-value=1.3e-08  Score=102.11  Aligned_cols=71  Identities=10%  Similarity=0.105  Sum_probs=46.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ...+..+.++||+|++.|.+....-...+|++|+|+|..+        .-.....+...+...+ .     ..|++++.|
T Consensus       103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~--------G~~~qt~~~~~l~~~l-g-----~~~iIvvvN  168 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARK--------GVLDQTRRHSFIATLL-G-----IKHLVVAVN  168 (474)
T ss_pred             ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC--------CccccchHHHHHHHHh-C-----CCceEEEEE
Confidence            5566789999999999886554445689999999999742        1111111122222111 1     247899999


Q ss_pred             CCCch
Q 018283          263 KFDIF  267 (358)
Q Consensus       263 K~Dl~  267 (358)
                      |+|+.
T Consensus       169 KiD~~  173 (474)
T PRK05124        169 KMDLV  173 (474)
T ss_pred             eeccc
Confidence            99985

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.96  E-value=7.2e-09  Score=102.21  Aligned_cols=72  Identities=10%  Similarity=0.116  Sum_probs=47.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ..++..+.++||+|++.|-+....-...+|++|+|+|.++        .-.....+...+...+      ...+++++.|
T Consensus        76 ~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~--------G~~~qt~~~~~~~~~~------~~~~iivviN  141 (406)
T TIGR02034        76 STDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARK--------GVLEQTRRHSYIASLL------GIRHVVLAVN  141 (406)
T ss_pred             ccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCC--------CCccccHHHHHHHHHc------CCCcEEEEEE
Confidence            5567789999999999886555556789999999999641        1111111222222111      2346899999


Q ss_pred             CCCchh
Q 018283          263 KFDIFE  268 (358)
Q Consensus       263 K~Dl~~  268 (358)
                      |+|+..
T Consensus       142 K~D~~~  147 (406)
T TIGR02034       142 KMDLVD  147 (406)
T ss_pred             eccccc
Confidence            999853

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>CHL00071 tufA elongation factor Tu

Probab=98.95  E-value=3.1e-08  Score=97.79  Aligned_cols=71  Identities=20%  Similarity=0.249  Sum_probs=48.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc-EEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-iilv~  261 (358)
                      ..++..+.+.||+|++.|-+....-...+|++++|+|...           .-.....+.+..+..    .++| ++++.
T Consensus        71 ~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~-----------g~~~qt~~~~~~~~~----~g~~~iIvvv  135 (409)
T CHL00071         71 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-----------GPMPQTKEHILLAKQ----VGVPNIVVFL  135 (409)
T ss_pred             ccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCEEEEEE
Confidence            4566788999999998876666666788999999999631           111223333433322    1467 77899


Q ss_pred             eCCCchh
Q 018283          262 NKFDIFE  268 (358)
Q Consensus       262 NK~Dl~~  268 (358)
                      ||+|+..
T Consensus       136 NK~D~~~  142 (409)
T CHL00071        136 NKEDQVD  142 (409)
T ss_pred             EccCCCC
Confidence            9999864

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.95  E-value=1.8e-08  Score=100.47  Aligned_cols=120  Identities=11%  Similarity=0.140  Sum_probs=71.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccc--cccccccccccchHHHHHHHHHHHHcCCCCCCC-cEEE
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE--YDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT-SFML  259 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~--~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~-~iil  259 (358)
                      ..++..+.+.|++|++.|-+-...-...+|++|+|+|.++  |..-.   .......+.+.+...       .++ ++++
T Consensus        81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~---~~~~qT~eh~~~~~~-------~gi~~iiv  150 (446)
T PTZ00141         81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGI---SKDGQTREHALLAFT-------LGVKQMIV  150 (446)
T ss_pred             ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceeccc---CCCccHHHHHHHHHH-------cCCCeEEE
Confidence            6677899999999999998877777889999999999741  00000   001222233332221       144 4789


Q ss_pred             EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHH
Q 018283          260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK  338 (358)
Q Consensus       260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~  338 (358)
                      +.||+|.....              |     ....+++..+-+...+...-.       ....+.+..+||++++|+.+
T Consensus       151 ~vNKmD~~~~~--------------~-----~~~~~~~i~~~i~~~l~~~g~-------~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        151 CINKMDDKTVN--------------Y-----SQERYDEIKKEVSAYLKKVGY-------NPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             EEEccccccch--------------h-----hHHHHHHHHHHHHHHHHhcCC-------CcccceEEEeecccCCCccc
Confidence            99999953210              0     002234444444444443210       11247788899999999863

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=4.4e-08  Score=95.41  Aligned_cols=132  Identities=18%  Similarity=0.200  Sum_probs=75.7

Q ss_pred             eeeEeeccCCCCcccceEEEEEecCCCchhhhh---------HhhhhcCCcEEEEEEEccccccccccccccchHHHHHH
Q 018283          171 VVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRK---------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE  241 (358)
Q Consensus       171 i~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~---------w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~  241 (358)
                      ..+..|      +..++++.+.||+|-+..+..         -..-.+.+|.|++|+|.-+        ....+-....+
T Consensus       306 aiea~v------~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~--------~~t~sd~~i~~  371 (531)
T KOG1191|consen  306 AIEAQV------TVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEE--------SDTESDLKIAR  371 (531)
T ss_pred             hheeEe------ecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccc--------cccccchHHHH
Confidence            346667      788999999999998762111         1223567999999999721        11111111112


Q ss_pred             HHHHHH-----cCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCC
Q 018283          242 LFDWVL-----KQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAP  316 (358)
Q Consensus       242 ~~~~i~-----~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~  316 (358)
                      .+...-     ..+.....|++++.||.|+...      +...+|-|..++...|                         
T Consensus       372 ~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~------~~~~~~~~~~~~~~~~-------------------------  420 (531)
T KOG1191|consen  372 ILETEGVGLVVIVNKMEKQRIILVANKSDLVSK------IPEMTKIPVVYPSAEG-------------------------  420 (531)
T ss_pred             HHHHhccceEEEeccccccceEEEechhhccCc------cccccCCceecccccc-------------------------
Confidence            222221     1111245799999999998532      2222232222111111                         


Q ss_pred             CCCCceEEEEE-eeccChhhHHHHHHHHHHHHHHh
Q 018283          317 DRVDRVFKIYR-TTALDPKLVKKTFKLVDETLRRR  350 (358)
Q Consensus       317 ~~~~~~~~~~~-tSA~d~~ni~~vf~~i~~~i~~~  350 (358)
                         .-.+.++. +|++++++++.+-..+.+.....
T Consensus       421 ---~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  421 ---RSVFPIVVEVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             ---CcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence               11234454 89999999999998888877653

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.93  E-value=1.4e-08  Score=84.78  Aligned_cols=100  Identities=16%  Similarity=0.244  Sum_probs=64.9

Q ss_pred             EEEecCCCchhhhhHhhh----hcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283          190 RLFDVGGQRNERRKWIHL----FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD  265 (358)
Q Consensus       190 ~i~D~~Gq~~~r~~w~~y----~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D  265 (358)
                      .+.||+|.--+.+.+-+.    -.+|+.|++|.|.++-.         +.+-   .-|..+     + +.|++=|.||.|
T Consensus        39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~---------~~~p---P~fa~~-----f-~~pvIGVITK~D  100 (143)
T PF10662_consen   39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPR---------SVFP---PGFASM-----F-NKPVIGVITKID  100 (143)
T ss_pred             cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCC---------ccCC---chhhcc-----c-CCCEEEEEECcc
Confidence            457999987665554443    34899999999975321         1110   011121     2 479999999999


Q ss_pred             chhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283          266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD  344 (358)
Q Consensus       266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~  344 (358)
                      +...                      +.+++.+.+|+...-             -+.  +|.+||.++++|+++.+.+.
T Consensus       101 l~~~----------------------~~~i~~a~~~L~~aG-------------~~~--if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  101 LPSD----------------------DANIERAKKWLKNAG-------------VKE--IFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             Cccc----------------------hhhHHHHHHHHHHcC-------------CCC--eEEEECCCCcCHHHHHHHHh
Confidence            9721                      134566666655431             122  48899999999999998875

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK09866 hypothetical protein; Provisional

Probab=98.92  E-value=3.2e-08  Score=100.02  Aligned_cols=117  Identities=11%  Similarity=0.175  Sum_probs=70.9

Q ss_pred             ceEEEEEecCCCchh-----hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEE
Q 018283          186 GEVYRLFDVGGQRNE-----RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLF  260 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~-----r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv  260 (358)
                      ...+.+.||+|-..-     ...-...+.++|.|+||+|...          .....+ ....+.+ .. ...+.|++++
T Consensus       229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~----------~~s~~D-eeIlk~L-kk-~~K~~PVILV  295 (741)
T PRK09866        229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQ----------LKSISD-EEVREAI-LA-VGQSVPLYVL  295 (741)
T ss_pred             cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCC----------CCChhH-HHHHHHH-Hh-cCCCCCEEEE
Confidence            457789999998542     2234457889999999999631          001111 1222222 21 1123699999


Q ss_pred             eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283          261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF  340 (358)
Q Consensus       261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf  340 (358)
                      .||+|+.++.                    + ...+....++...+....         -..-.++.+||+.+.|+..+.
T Consensus       296 VNKIDl~dre--------------------e-ddkE~Lle~V~~~L~q~~---------i~f~eIfPVSAlkG~nid~LL  345 (741)
T PRK09866        296 VNKFDQQDRN--------------------S-DDADQVRALISGTLMKGC---------ITPQQIFPVSSMWGYLANRAR  345 (741)
T ss_pred             EEcccCCCcc--------------------c-chHHHHHHHHHHHHHhcC---------CCCceEEEEeCCCCCCHHHHH
Confidence            9999984210                    1 234555566554433211         112346779999999999999


Q ss_pred             HHHHH
Q 018283          341 KLVDE  345 (358)
Q Consensus       341 ~~i~~  345 (358)
                      +.|..
T Consensus       346 deI~~  350 (741)
T PRK09866        346 HELAN  350 (741)
T ss_pred             HHHHh
Confidence            98876

>cd01850 CDC_Septin CDC/Septin

Probab=98.90  E-value=5e-09  Score=97.97  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=19.5

Q ss_pred             cccEEEecCCCCChhHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~   67 (358)
                      .++|+|+|.+|+|||||++.+
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L   24 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTL   24 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHH
Confidence            579999999999999999987

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK12740 elongation factor G; Reviewed

Probab=98.90  E-value=2.5e-08  Score=104.53  Aligned_cols=84  Identities=13%  Similarity=0.086  Sum_probs=61.7

Q ss_pred             eeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH
Q 018283          165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD  244 (358)
Q Consensus       165 ~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~  244 (358)
                      |..|.+.....+      ..++..+.+|||+|+..+...|..+++.+|++|+|+|.++-          . .......+.
T Consensus        44 rgiTi~~~~~~~------~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~----------~-~~~~~~~~~  106 (668)
T PRK12740         44 RGISITSAATTC------EWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGG----------V-EPQTETVWR  106 (668)
T ss_pred             cCCCeeeceEEE------EECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCC----------c-CHHHHHHHH
Confidence            455666666666      66789999999999999988999999999999999997531          1 112233344


Q ss_pred             HHHcCCCCCCCcEEEEeeCCCchhh
Q 018283          245 WVLKQPCFEKTSFMLFLNKFDIFEK  269 (358)
Q Consensus       245 ~i~~~~~~~~~~iilv~NK~Dl~~e  269 (358)
                      .+..    .+.|+++|+||+|+...
T Consensus       107 ~~~~----~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740        107 QAEK----YGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHH----cCCCEEEEEECCCCCCC
Confidence            3332    25799999999998743

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.90  E-value=4.3e-08  Score=89.03  Aligned_cols=133  Identities=17%  Similarity=0.300  Sum_probs=75.7

Q ss_pred             cceEEEEEecCCC-chhhhhHhh-------hh--cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          185 SGEVYRLFDVGGQ-RNERRKWIH-------LF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       185 ~~~~l~i~D~~Gq-~~~r~~w~~-------y~--~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ....+.+.||+|| +.|.  |..       -+  ....+++||+|..       .+++...|-...-.--+++-.   .+
T Consensus       114 ~~~~~~liDTPGQIE~Ft--WSAsGsIIte~lass~ptvv~YvvDt~-------rs~~p~tFMSNMlYAcSilyk---tk  181 (366)
T KOG1532|consen  114 EEFDYVLIDTPGQIEAFT--WSASGSIITETLASSFPTVVVYVVDTP-------RSTSPTTFMSNMLYACSILYK---TK  181 (366)
T ss_pred             cccCEEEEcCCCceEEEE--ecCCccchHhhHhhcCCeEEEEEecCC-------cCCCchhHHHHHHHHHHHHHh---cc
Confidence            3456778888888 3331  211       11  1346789999964       234444444444444555443   26


Q ss_pred             CcEEEEeeCCCchhhhhccCCCccccccccccc---CCC----Cc-ccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQP---VST----GK-QEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY  326 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~---~~~----g~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~  326 (358)
                      .|+++++||+|+.+.....      +|-.+|-.   +..    +- ..+...+......|-.             .+...
T Consensus       182 lp~ivvfNK~Dv~d~~fa~------eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~-------------~lrtv  242 (366)
T KOG1532|consen  182 LPFIVVFNKTDVSDSEFAL------EWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYR-------------SLRTV  242 (366)
T ss_pred             CCeEEEEecccccccHHHH------HHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHh-------------hCceE
Confidence            7999999999997654321      45554410   000    00 1222233333333322             24456


Q ss_pred             EeeccChhhHHHHHHHHHHHHH
Q 018283          327 RTTALDPKLVKKTFKLVDETLR  348 (358)
Q Consensus       327 ~tSA~d~~ni~~vf~~i~~~i~  348 (358)
                      .+||.+|.+..+.|..|...+-
T Consensus       243 ~VSs~tG~G~ddf~~av~~~vd  264 (366)
T KOG1532|consen  243 GVSSVTGEGFDDFFTAVDESVD  264 (366)
T ss_pred             EEecccCCcHHHHHHHHHHHHH
Confidence            6899999999999999877664

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.88  E-value=8.7e-09  Score=101.95  Aligned_cols=121  Identities=14%  Similarity=0.143  Sum_probs=77.6

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchH-HHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l-~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ..+...+.|++..+..+-.-.+=.+.++++..|+++++       ....+++ ..|+-++++....  ..++||||||||
T Consensus        54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~-------~~T~D~ist~WLPlir~~~~~--~~~~PVILvGNK  124 (625)
T KOG1707|consen   54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDD-------ESTVDRISTKWLPLIRQLFGD--YHETPVILVGNK  124 (625)
T ss_pred             CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCC-------hHHhhhhhhhhhhhhhcccCC--CccCCEEEEeec
Confidence            44557889998665555555677899999999998731       1222222 2344444443322  257999999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      .|+.....                     ...+.-+.=|-+.|.++-             .++++||+.-.|+.++|...
T Consensus       125 ~d~~~~~~---------------------~s~e~~~~pim~~f~EiE-------------tciecSA~~~~n~~e~fYya  170 (625)
T KOG1707|consen  125 SDNGDNEN---------------------NSDEVNTLPIMIAFAEIE-------------TCIECSALTLANVSELFYYA  170 (625)
T ss_pred             cCCccccc---------------------cchhHHHHHHHHHhHHHH-------------HHHhhhhhhhhhhHhhhhhh
Confidence            99854321                     111222333445555541             25679999999999999998


Q ss_pred             HHHHH
Q 018283          344 DETLR  348 (358)
Q Consensus       344 ~~~i~  348 (358)
                      .+.++
T Consensus       171 qKaVi  175 (625)
T KOG1707|consen  171 QKAVI  175 (625)
T ss_pred             hheee
Confidence            88765

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.88  E-value=3.8e-09  Score=93.45  Aligned_cols=75  Identities=17%  Similarity=0.356  Sum_probs=51.6

Q ss_pred             cceEEEEEecCCCchh-----hhhHhhhhcCCcEEEEEEEccccccccccccc-cchHHHHHHHHHHHHcCCCCCCCcEE
Q 018283          185 SGEVYRLFDVGGQRNE-----RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQ-KNRMMETKELFDWVLKQPCFEKTSFM  258 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~-----r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~-~~~l~~~~~~~~~i~~~~~~~~~~ii  258 (358)
                      +++.+.+||.|||+.+     +..-.+-|++++++|||+|++        +.+ ...++.-..-++.++++  .+...++
T Consensus        51 Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDve--------s~e~~~D~~~yqk~Le~ll~~--SP~AkiF  120 (295)
T KOG3886|consen   51 GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVE--------SREMEKDFHYYQKCLEALLQN--SPEAKIF  120 (295)
T ss_pred             hhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeecc--------chhhhhhHHHHHHHHHHHHhc--CCcceEE
Confidence            5588999999999965     334455789999999999984        111 12233333444555554  3467889


Q ss_pred             EEeeCCCchhh
Q 018283          259 LFLNKFDIFEK  269 (358)
Q Consensus       259 lv~NK~Dl~~e  269 (358)
                      .+..|+||..+
T Consensus       121 ~l~hKmDLv~~  131 (295)
T KOG3886|consen  121 CLLHKMDLVQE  131 (295)
T ss_pred             EEEeechhccc
Confidence            99999999753

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.85  E-value=2e-08  Score=105.54  Aligned_cols=71  Identities=10%  Similarity=0.078  Sum_probs=53.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ..++..+.+|||+|+..+...+..+++.+|++|+|+|.++         . .. ......+..+..    .++|+++++|
T Consensus        71 ~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~---------g-~~-~~~~~~~~~~~~----~~~p~ivviN  135 (689)
T TIGR00484        71 FWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVG---------G-VQ-PQSETVWRQANR----YEVPRIAFVN  135 (689)
T ss_pred             EECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCC---------C-CC-hhHHHHHHHHHH----cCCCEEEEEE
Confidence            5677899999999999998899999999999999999742         1 11 112333433322    2579999999


Q ss_pred             CCCchh
Q 018283          263 KFDIFE  268 (358)
Q Consensus       263 K~Dl~~  268 (358)
                      |+|+..
T Consensus       136 K~D~~~  141 (689)
T TIGR00484       136 KMDKTG  141 (689)
T ss_pred             CCCCCC
Confidence            999874

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.83  E-value=2.6e-08  Score=91.08  Aligned_cols=132  Identities=19%  Similarity=0.235  Sum_probs=67.0

Q ss_pred             EEEEEecCCCchhhhhHhhhh--------cCCcEEEEEEEccccccccccccccchHH-HHHHHHHHHHcCCCCCCCcEE
Q 018283          188 VYRLFDVGGQRNERRKWIHLF--------EGVSAVIFCAAISEYDQTLFEDEQKNRMM-ETKELFDWVLKQPCFEKTSFM  258 (358)
Q Consensus       188 ~l~i~D~~Gq~~~r~~w~~y~--------~~~~~iIfv~dls~~d~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~ii  258 (358)
                      .+.++||+||-.+-..|..-.        ...-++||++|.+..       .+...+- ..+-.+...++.    +.|.+
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~-------~~~~~f~s~~L~s~s~~~~~----~lP~v  160 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFC-------SDPSKFVSSLLLSLSIMLRL----ELPHV  160 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG--------SSHHHHHHHHHHHHHHHHHH----TSEEE
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccc-------cChhhHHHHHHHHHHHHhhC----CCCEE
Confidence            689999999988766666544        456689999997422       1222232 222223333332    68999


Q ss_pred             EEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHH----HHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          259 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAY----EFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       259 lv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~----~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      .++||+|+..+....    .-+|+.+.       +......    +.+.....+++...      .....++-.|+++++
T Consensus       161 nvlsK~Dl~~~~~~~----~l~~~~d~-------~~l~~~~~~~~~~l~~~i~~~l~~~------~~~~~f~pls~~~~~  223 (238)
T PF03029_consen  161 NVLSKIDLLSKYLEF----ILEWFEDP-------DSLEDLLESDYKKLNEEIAELLDDF------GLVIRFIPLSSKDGE  223 (238)
T ss_dssp             EEE--GGGS-HHHHH----HHHHHHSH-------HHHHHHHHT-HHHHHHHHHHHCCCC------SSS---EE-BTTTTT
T ss_pred             EeeeccCcccchhHH----HHHHhcCh-------HHHHHHHHHHHHHHHHHHHHHHhhc------CCCceEEEEECCChH
Confidence            999999998743111    11344433       2222222    33333333333111      112257779999999


Q ss_pred             hHHHHHHHHHHHH
Q 018283          335 LVKKTFKLVDETL  347 (358)
Q Consensus       335 ni~~vf~~i~~~i  347 (358)
                      ++..++..|.+.+
T Consensus       224 ~~~~L~~~id~a~  236 (238)
T PF03029_consen  224 GMEELLAAIDKAN  236 (238)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK00049 elongation factor Tu; Reviewed

Probab=98.82  E-value=1.8e-07  Score=92.08  Aligned_cols=70  Identities=19%  Similarity=0.283  Sum_probs=46.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEE-EEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM-LFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ii-lv~  261 (358)
                      ..++..+.+.||+|++.|..-...-...+|++++|+|..+         .  -.....+.+..+..    .++|++ ++.
T Consensus        71 ~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~---------g--~~~qt~~~~~~~~~----~g~p~iiVvv  135 (396)
T PRK00049         71 ETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD---------G--PMPQTREHILLARQ----VGVPYIVVFL  135 (396)
T ss_pred             cCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC---------C--CchHHHHHHHHHHH----cCCCEEEEEE
Confidence            4456788999999998775555555789999999999631         1  11222333333322    146865 689


Q ss_pred             eCCCch
Q 018283          262 NKFDIF  267 (358)
Q Consensus       262 NK~Dl~  267 (358)
                      ||+|+.
T Consensus       136 NK~D~~  141 (396)
T PRK00049        136 NKCDMV  141 (396)
T ss_pred             eecCCc
Confidence            999985

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.82  E-value=9.2e-08  Score=92.94  Aligned_cols=119  Identities=18%  Similarity=0.279  Sum_probs=76.3

Q ss_pred             cccceEEEEEecCCCchhhhhHh-----------hhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWI-----------HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  251 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~-----------~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~  251 (358)
                      ..++-.+.+.||+|-++-.+...           .-.+.++.+++|+|.++           .-.+.-.....-+..   
T Consensus       222 e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~-----------~~~~qD~~ia~~i~~---  287 (444)
T COG1160         222 ERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATE-----------GISEQDLRIAGLIEE---  287 (444)
T ss_pred             EECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCC-----------CchHHHHHHHHHHHH---
Confidence            66778899999999876544333           12346899999999641           222222333434433   


Q ss_pred             CCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeecc
Q 018283          252 FEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL  331 (358)
Q Consensus       252 ~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~  331 (358)
                       .+.+++++.||-|+.++.-                     ...++..+-|..+|..+           .....+++||+
T Consensus       288 -~g~~~vIvvNKWDl~~~~~---------------------~~~~~~k~~i~~~l~~l-----------~~a~i~~iSA~  334 (444)
T COG1160         288 -AGRGIVIVVNKWDLVEEDE---------------------ATMEEFKKKLRRKLPFL-----------DFAPIVFISAL  334 (444)
T ss_pred             -cCCCeEEEEEccccCCchh---------------------hHHHHHHHHHHHHhccc-----------cCCeEEEEEec
Confidence             2679999999999875410                     12233333444444322           12457889999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q 018283          332 DPKLVKKTFKLVDETLR  348 (358)
Q Consensus       332 d~~ni~~vf~~i~~~i~  348 (358)
                      ++.++..+|+.+.+..-
T Consensus       335 ~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         335 TGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             CCCChHHHHHHHHHHHH
Confidence            99999999999887653

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.81  E-value=6.5e-08  Score=100.69  Aligned_cols=71  Identities=11%  Similarity=0.112  Sum_probs=46.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ...+..+.++||+|++.|-+....-...+|++|+|+|.++        .-.....+...+...+      ...+++++.|
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~--------g~~~~t~e~~~~~~~~------~~~~iivvvN  165 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARK--------GVLTQTRRHSFIASLL------GIRHVVLAVN  165 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCC--------CccccCHHHHHHHHHh------CCCeEEEEEE
Confidence            5567788999999999876555556789999999999741        1111111222222221      2357899999


Q ss_pred             CCCch
Q 018283          263 KFDIF  267 (358)
Q Consensus       263 K~Dl~  267 (358)
                      |+|+.
T Consensus       166 K~D~~  170 (632)
T PRK05506        166 KMDLV  170 (632)
T ss_pred             ecccc
Confidence            99985

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.80  E-value=4.3e-08  Score=95.22  Aligned_cols=108  Identities=24%  Similarity=0.282  Sum_probs=67.6

Q ss_pred             ccceEEEEEecCCCch---------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          184 KSGEVYRLFDVGGQRN---------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~---------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ..+..|.+.||||-+.         .+.+...-...||++|||+|.-         ......   -+.+-.++..   .+
T Consensus        48 ~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~---------~Git~~---D~~ia~~Lr~---~~  112 (444)
T COG1160          48 WLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGR---------EGITPA---DEEIAKILRR---SK  112 (444)
T ss_pred             EcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCC---------CCCCHH---HHHHHHHHHh---cC
Confidence            3456699999999863         2445555678999999999962         111221   1222222221   25


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      +|++|+.||+|-..+..                         .+.+     |..+..           -.++-+||..|.
T Consensus       113 kpviLvvNK~D~~~~e~-------------------------~~~e-----fyslG~-----------g~~~~ISA~Hg~  151 (444)
T COG1160         113 KPVILVVNKIDNLKAEE-------------------------LAYE-----FYSLGF-----------GEPVPISAEHGR  151 (444)
T ss_pred             CCEEEEEEcccCchhhh-------------------------hHHH-----HHhcCC-----------CCceEeehhhcc
Confidence            89999999999753211                         0111     112110           123558999999


Q ss_pred             hHHHHHHHHHHHH
Q 018283          335 LVKKTFKLVDETL  347 (358)
Q Consensus       335 ni~~vf~~i~~~i  347 (358)
                      |+.++.++|.+.+
T Consensus       152 Gi~dLld~v~~~l  164 (444)
T COG1160         152 GIGDLLDAVLELL  164 (444)
T ss_pred             CHHHHHHHHHhhc
Confidence            9999999988875

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.80  E-value=3.5e-08  Score=104.00  Aligned_cols=71  Identities=23%  Similarity=0.268  Sum_probs=52.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +..+..+.+|||+|+..|.......++.+|++|+|+|..+         ..  ...+...+..+..    .+.|+++|+|
T Consensus        82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~---------g~--~~~t~~~~~~~~~----~~~p~ivviN  146 (720)
T TIGR00490        82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVE---------GV--MPQTETVLRQALK----ENVKPVLFIN  146 (720)
T ss_pred             cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCC---------CC--CccHHHHHHHHHH----cCCCEEEEEE
Confidence            5667899999999999988888889999999999999741         11  1122333433322    2468889999


Q ss_pred             CCCchh
Q 018283          263 KFDIFE  268 (358)
Q Consensus       263 K~Dl~~  268 (358)
                      |+|...
T Consensus       147 KiD~~~  152 (720)
T TIGR00490       147 KVDRLI  152 (720)
T ss_pred             Chhccc
Confidence            999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PLN03127 Elongation factor Tu; Provisional

Probab=98.78  E-value=4e-07  Score=90.70  Aligned_cols=82  Identities=18%  Similarity=0.260  Sum_probs=51.5

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      ..|.......|      ...+..+.+.||+|++.|-.....-...+|++++|+|..+         .  -.....+.+..
T Consensus       109 GiTi~~~~~~~------~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~---------g--~~~qt~e~l~~  171 (447)
T PLN03127        109 GITIATAHVEY------ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD---------G--PMPQTKEHILL  171 (447)
T ss_pred             CceeeeeEEEE------cCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCC---------C--CchhHHHHHHH
Confidence            34444445556      5566788999999998775444444567999999999631         1  11222333333


Q ss_pred             HHcCCCCCCCc-EEEEeeCCCchh
Q 018283          246 VLKQPCFEKTS-FMLFLNKFDIFE  268 (358)
Q Consensus       246 i~~~~~~~~~~-iilv~NK~Dl~~  268 (358)
                      +..    .++| ++++.||+|+.+
T Consensus       172 ~~~----~gip~iIvviNKiDlv~  191 (447)
T PLN03127        172 ARQ----VGVPSLVVFLNKVDVVD  191 (447)
T ss_pred             HHH----cCCCeEEEEEEeeccCC
Confidence            322    1467 578899999863

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=98.77  E-value=3.3e-07  Score=81.19  Aligned_cols=75  Identities=12%  Similarity=0.152  Sum_probs=46.6

Q ss_pred             cccceEEEEEecCCCchh-------h----hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283          183 KKSGEVYRLFDVGGQRNE-------R----RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  251 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~-------r----~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~  251 (358)
                      ...+..+.++||+|-...       .    +.+.....+++++|||+++..+         ...-...++++..++....
T Consensus        45 ~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~---------t~~d~~~l~~l~~~fg~~~  115 (196)
T cd01852          45 VWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF---------TEEEEQAVETLQELFGEKV  115 (196)
T ss_pred             EECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc---------CHHHHHHHHHHHHHhChHh
Confidence            345678999999996432       1    1122234689999999997532         2223445666666554322


Q ss_pred             CCCCcEEEEeeCCCchh
Q 018283          252 FEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       252 ~~~~~iilv~NK~Dl~~  268 (358)
                        -.++++++|+.|-..
T Consensus       116 --~~~~ivv~T~~d~l~  130 (196)
T cd01852         116 --LDHTIVLFTRGDDLE  130 (196)
T ss_pred             --HhcEEEEEECccccC
Confidence              137888899988654

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG1159 Era GTPase [General function prediction only]

Probab=98.76  E-value=1.7e-07  Score=86.57  Aligned_cols=70  Identities=19%  Similarity=0.253  Sum_probs=44.2

Q ss_pred             cceEEEEEecCCCchhhhhH--------hhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc
Q 018283          185 SGEVYRLFDVGGQRNERRKW--------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS  256 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w--------~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~  256 (358)
                      +...+.+.||+|-..-+..-        ..-+.+||.++||+|..+         ......+  ..++.+ ..   .++|
T Consensus        52 ~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~---------~~~~~d~--~il~~l-k~---~~~p  116 (298)
T COG1159          52 DNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADE---------GWGPGDE--FILEQL-KK---TKTP  116 (298)
T ss_pred             CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccc---------cCCccHH--HHHHHH-hh---cCCC
Confidence            46788999999986543332        224678999999999742         1222111  122222 21   3579


Q ss_pred             EEEEeeCCCchhh
Q 018283          257 FMLFLNKFDIFEK  269 (358)
Q Consensus       257 iilv~NK~Dl~~e  269 (358)
                      ++++.||.|....
T Consensus       117 vil~iNKID~~~~  129 (298)
T COG1159         117 VILVVNKIDKVKP  129 (298)
T ss_pred             eEEEEEccccCCc
Confidence            9999999998643

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.72  E-value=9e-08  Score=77.31  Aligned_cols=64  Identities=22%  Similarity=0.389  Sum_probs=40.1

Q ss_pred             cccceEEEEEecCCCchh---------hhhHhhhhcCCcEEEEEEEccccccccccccccchH-HHHHHHHHHHHcCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNE---------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQPCF  252 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~---------r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l-~~~~~~~~~i~~~~~~  252 (358)
                      ......+.++||+|-...         .......+..++++|||+|.+.            .. ......++.+ +    
T Consensus        43 ~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l-~----  105 (116)
T PF01926_consen   43 EYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASN------------PITEDDKNILREL-K----  105 (116)
T ss_dssp             EETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHH-H----
T ss_pred             eeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHH-h----
Confidence            345667789999996421         1122333478999999999631            11 1223333444 2    


Q ss_pred             CCCcEEEEeeC
Q 018283          253 EKTSFMLFLNK  263 (358)
Q Consensus       253 ~~~~iilv~NK  263 (358)
                      .+.|+++|+||
T Consensus       106 ~~~~~i~v~NK  116 (116)
T PF01926_consen  106 NKKPIILVLNK  116 (116)
T ss_dssp             TTSEEEEEEES
T ss_pred             cCCCEEEEEcC
Confidence            46899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.71  E-value=4.1e-07  Score=86.63  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=29.9

Q ss_pred             cceEEEEEecCCC----chhhhh---HhhhhcCCcEEEEEEEccc
Q 018283          185 SGEVYRLFDVGGQ----RNERRK---WIHLFEGVSAVIFCAAISE  222 (358)
Q Consensus       185 ~~~~l~i~D~~Gq----~~~r~~---w~~y~~~~~~iIfv~dls~  222 (358)
                      ..+.+++|||+|+    +..+.+   ...++++||++|+|+|+++
T Consensus        67 ~~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          67 RYVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CcceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence            4578999999998    445544   3445899999999999974

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK12739 elongation factor G; Reviewed

Probab=98.66  E-value=1.7e-07  Score=98.47  Aligned_cols=72  Identities=11%  Similarity=0.087  Sum_probs=54.1

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ..++..+.++||+|+..+..-|...++.+|++|+|+|.++         ...  ......+..+..    .+.|++++.|
T Consensus        69 ~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~---------g~~--~qt~~i~~~~~~----~~~p~iv~iN  133 (691)
T PRK12739         69 FWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVS---------GVE--PQSETVWRQADK----YGVPRIVFVN  133 (691)
T ss_pred             EECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCC---------CCC--HHHHHHHHHHHH----cCCCEEEEEE
Confidence            5677899999999999998899999999999999999742         111  122334444332    2579999999


Q ss_pred             CCCchhh
Q 018283          263 KFDIFEK  269 (358)
Q Consensus       263 K~Dl~~e  269 (358)
                      |+|+..+
T Consensus       134 K~D~~~~  140 (691)
T PRK12739        134 KMDRIGA  140 (691)
T ss_pred             CCCCCCC
Confidence            9999753

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=5e-07  Score=89.09  Aligned_cols=114  Identities=12%  Similarity=0.112  Sum_probs=85.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +++.+.+++.||+||-.|+.--..-+.-|+++|+|||.+           ..-...+...|...+..    +..+|.|.|
T Consensus       121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~-----------qGvqAQT~anf~lAfe~----~L~iIpVlN  185 (650)
T KOG0462|consen  121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDAS-----------QGVQAQTVANFYLAFEA----GLAIIPVLN  185 (650)
T ss_pred             cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcC-----------cCchHHHHHHHHHHHHc----CCeEEEeee
Confidence            356799999999999999888888888999999999953           33344445555555443    568899999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..+                        +.++...-+.+.|...            .-.+.+.|||.|.|+.+++++
T Consensus       186 KIDlp~a------------------------dpe~V~~q~~~lF~~~------------~~~~i~vSAK~G~~v~~lL~A  229 (650)
T KOG0462|consen  186 KIDLPSA------------------------DPERVENQLFELFDIP------------PAEVIYVSAKTGLNVEELLEA  229 (650)
T ss_pred             ccCCCCC------------------------CHHHHHHHHHHHhcCC------------ccceEEEEeccCccHHHHHHH
Confidence            9999654                        3455666666666432            114567899999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      |.+.|
T Consensus       230 II~rV  234 (650)
T KOG0462|consen  230 IIRRV  234 (650)
T ss_pred             HHhhC
Confidence            98876

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.61  E-value=6e-07  Score=89.51  Aligned_cols=116  Identities=11%  Similarity=0.115  Sum_probs=70.9

Q ss_pred             eEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 018283          187 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI  266 (358)
Q Consensus       187 ~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl  266 (358)
                      ..+.+.|++|++.|-+-...-...+|++++|+|..+-       .......+.+.....      +.-.+++++.||+|+
T Consensus       117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g-------~~~~qT~ehl~i~~~------lgi~~iIVvlNKiDl  183 (460)
T PTZ00327        117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES-------CPQPQTSEHLAAVEI------MKLKHIIILQNKIDL  183 (460)
T ss_pred             ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC-------ccchhhHHHHHHHHH------cCCCcEEEEEecccc
Confidence            4678999999998866655566789999999997420       011112222222211      122478999999998


Q ss_pred             hhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283          267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       267 ~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~  346 (358)
                      ....                       ..++..+.+.+.+....         ...+.++.+||++++|+..+.+.+.+.
T Consensus       184 v~~~-----------------------~~~~~~~ei~~~l~~~~---------~~~~~iipVSA~~G~nI~~Ll~~L~~~  231 (460)
T PTZ00327        184 VKEA-----------------------QAQDQYEEIRNFVKGTI---------ADNAPIIPISAQLKYNIDVVLEYICTQ  231 (460)
T ss_pred             cCHH-----------------------HHHHHHHHHHHHHHhhc---------cCCCeEEEeeCCCCCCHHHHHHHHHhh
Confidence            6321                       11222222332222111         123567889999999999999888764


Q ss_pred             H
Q 018283          347 L  347 (358)
Q Consensus       347 i  347 (358)
                      +
T Consensus       232 l  232 (460)
T PTZ00327        232 I  232 (460)
T ss_pred             C
Confidence            4

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=4.6e-07  Score=86.93  Aligned_cols=133  Identities=13%  Similarity=0.098  Sum_probs=80.4

Q ss_pred             eeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH
Q 018283          165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD  244 (358)
Q Consensus       165 ~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~  244 (358)
                      |..|+.+....|      ......|+|.|+.|++.|-+....-...||+.|+|+|.+.- +...-=.-.....+..-+..
T Consensus        69 rGvTi~~~~~~f------et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~-efE~g~~~~gQtrEH~~La~  141 (428)
T COG5256          69 RGVTIDVAHSKF------ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDG-EFEAGFGVGGQTREHAFLAR  141 (428)
T ss_pred             cceEEEEEEEEe------ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCC-ccccccccCCchhHHHHHHH
Confidence            456666777778      77788999999999999988888888899999999997521 00000001122223222222


Q ss_pred             HHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEE
Q 018283          245 WVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFK  324 (358)
Q Consensus       245 ~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~  324 (358)
                      .      +.-..++++.||+|+.+-..                     +.+++..+-+.. +....    +-  ....+.
T Consensus       142 t------lGi~~lIVavNKMD~v~wde---------------------~rf~ei~~~v~~-l~k~~----G~--~~~~v~  187 (428)
T COG5256         142 T------LGIKQLIVAVNKMDLVSWDE---------------------ERFEEIVSEVSK-LLKMV----GY--NPKDVP  187 (428)
T ss_pred             h------cCCceEEEEEEcccccccCH---------------------HHHHHHHHHHHH-HHHHc----CC--CccCCe
Confidence            2      12347899999999864110                     223443333333 22211    10  122466


Q ss_pred             EEEeeccChhhHHH
Q 018283          325 IYRTTALDPKLVKK  338 (358)
Q Consensus       325 ~~~tSA~d~~ni~~  338 (358)
                      +.=+||..|+|+.+
T Consensus       188 FIPiSg~~G~Nl~~  201 (428)
T COG5256         188 FIPISGFKGDNLTK  201 (428)
T ss_pred             EEecccccCCcccc
Confidence            66799999999865

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.58  E-value=7e-07  Score=83.38  Aligned_cols=84  Identities=21%  Similarity=0.298  Sum_probs=58.4

Q ss_pred             cCceeeEeeccCCCCcccceEEEEEecCCCch----hhhhH----hhhhc-CCcEEEEEEEccccccccccccccchHHH
Q 018283          168 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRN----ERRKW----IHLFE-GVSAVIFCAAISEYDQTLFEDEQKNRMME  238 (358)
Q Consensus       168 T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~----~r~~w----~~y~~-~~~~iIfv~dls~~d~~~~~~~~~~~l~~  238 (358)
                      |-|+..-.|      ..+...+++.||+|--.    +|.-.    ..-.+ =.++|+|++|.|+        ..--.+++
T Consensus       202 TK~i~vGhf------e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se--------~cgy~lE~  267 (346)
T COG1084         202 TKGIHVGHF------ERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSE--------TCGYSLEE  267 (346)
T ss_pred             ccceeEeee------ecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcc--------ccCCCHHH
Confidence            456666666      77888999999999721    11111    11122 2568999999974        45567788


Q ss_pred             HHHHHHHHHcCCCCCCCcEEEEeeCCCchh
Q 018283          239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       239 ~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~  268 (358)
                      -..+|+++...  +. .|+++|.||.|+.+
T Consensus       268 Q~~L~~eIk~~--f~-~p~v~V~nK~D~~~  294 (346)
T COG1084         268 QISLLEEIKEL--FK-APIVVVINKIDIAD  294 (346)
T ss_pred             HHHHHHHHHHh--cC-CCeEEEEecccccc
Confidence            88999998643  44 89999999999863

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.50  E-value=6.6e-06  Score=78.63  Aligned_cols=116  Identities=12%  Similarity=0.113  Sum_probs=65.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +..+..+.|.||+|-..--   .....-+|.+++|.+.          ..-+.+....   ..++.      ..-++|.|
T Consensus       145 ~~~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p----------~~gd~iq~~k---~gi~E------~aDIiVVN  202 (332)
T PRK09435        145 EAAGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLP----------GAGDELQGIK---KGIME------LADLIVIN  202 (332)
T ss_pred             hccCCCEEEEECCCCccch---hHHHHhCCEEEEEecC----------CchHHHHHHH---hhhhh------hhheEEee
Confidence            4456788999999976322   2246679999999752          1122221111   11222      12379999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+...                       .........+...+.-..     +........++.+||++++||+++++.
T Consensus       203 KaDl~~~-----------------------~~a~~~~~el~~~L~l~~-----~~~~~w~~pVi~vSA~~g~GIdeL~~~  254 (332)
T PRK09435        203 KADGDNK-----------------------TAARRAAAEYRSALRLLR-----PKDPGWQPPVLTCSALEGEGIDEIWQA  254 (332)
T ss_pred             hhcccch-----------------------hHHHHHHHHHHHHHhccc-----ccccCCCCCEEEEECCCCCCHHHHHHH
Confidence            9998642                       112333333333332211     000011124678999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      |.+.+-
T Consensus       255 I~~~~~  260 (332)
T PRK09435        255 IEDHRA  260 (332)
T ss_pred             HHHHHH
Confidence            988653

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=3.5e-07  Score=90.34  Aligned_cols=117  Identities=15%  Similarity=0.085  Sum_probs=76.8

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  264 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~  264 (358)
                      ..-.+.+.||+||+.|-.+...=..=+|.+|+|+|..        +--.....++++..+.       .++|+++..||+
T Consensus        53 ~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~d--------DGv~pQTiEAI~hak~-------a~vP~iVAiNKi  117 (509)
T COG0532          53 KIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAAD--------DGVMPQTIEAINHAKA-------AGVPIVVAINKI  117 (509)
T ss_pred             CCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEcc--------CCcchhHHHHHHHHHH-------CCCCEEEEEecc
Confidence            3457899999999999888887777789999999972        3334444555444433       379999999999


Q ss_pred             CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283          265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD  344 (358)
Q Consensus       265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~  344 (358)
                      |..+...    .+..             ....+ ..+..+.|             .+.+.+.-+||++|+||.++++.+.
T Consensus       118 Dk~~~np----~~v~-------------~el~~-~gl~~E~~-------------gg~v~~VpvSA~tg~Gi~eLL~~il  166 (509)
T COG0532         118 DKPEANP----DKVK-------------QELQE-YGLVPEEW-------------GGDVIFVPVSAKTGEGIDELLELIL  166 (509)
T ss_pred             cCCCCCH----HHHH-------------HHHHH-cCCCHhhc-------------CCceEEEEeeccCCCCHHHHHHHHH
Confidence            9874321    1000             00000 01111111             3446677799999999999998876


Q ss_pred             HHH
Q 018283          345 ETL  347 (358)
Q Consensus       345 ~~i  347 (358)
                      -.-
T Consensus       167 l~a  169 (509)
T COG0532         167 LLA  169 (509)
T ss_pred             HHH
Confidence            544

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.48  E-value=3.9e-06  Score=77.98  Aligned_cols=111  Identities=14%  Similarity=0.190  Sum_probs=66.5

Q ss_pred             EEEEecCCC----chhhh---hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHH-cCCCCCCCcEEEE
Q 018283          189 YRLFDVGGQ----RNERR---KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL-KQPCFEKTSFMLF  260 (358)
Q Consensus       189 l~i~D~~Gq----~~~r~---~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~-~~~~~~~~~iilv  260 (358)
                      +.+-|++|-    ..-|-   ......+.++.++||+|+|.+..       .+-++....++.++- -...+.+.|.++|
T Consensus       246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL~~ELe~yek~L~~rp~liV  318 (366)
T KOG1489|consen  246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL-------RNPWQQLQLLIEELELYEKGLADRPALIV  318 (366)
T ss_pred             eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCccc-------CCHHHHHHHHHHHHHHHhhhhccCceEEE
Confidence            888898875    22222   34445668999999999985522       233333333333321 1234567899999


Q ss_pred             eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283          261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF  340 (358)
Q Consensus       261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf  340 (358)
                      +||+|+.++.                            .+++.+-...+    +       .-+++..||+.++++..+.
T Consensus       319 aNKiD~~eae----------------------------~~~l~~L~~~l----q-------~~~V~pvsA~~~egl~~ll  359 (366)
T KOG1489|consen  319 ANKIDLPEAE----------------------------KNLLSSLAKRL----Q-------NPHVVPVSAKSGEGLEELL  359 (366)
T ss_pred             EeccCchhHH----------------------------HHHHHHHHHHc----C-------CCcEEEeeeccccchHHHH
Confidence            9999996431                            11111111111    0       1145678999999999988


Q ss_pred             HHHHH
Q 018283          341 KLVDE  345 (358)
Q Consensus       341 ~~i~~  345 (358)
                      +.+..
T Consensus       360 ~~lr~  364 (366)
T KOG1489|consen  360 NGLRE  364 (366)
T ss_pred             HHHhh
Confidence            87654

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.47  E-value=2.7e-06  Score=86.48  Aligned_cols=119  Identities=15%  Similarity=0.086  Sum_probs=77.2

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchh------hhhHhhhhc--CCcEEEEEEEccccccccccccccchHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNE------RRKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMME  238 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~------r~~w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~  238 (358)
                      .|+-.++-.+      ..++-.+++.|++|-.+.      -...++|..  ++|.+|-|+|.+             .++.
T Consensus        36 vTVEkkeg~~------~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAt-------------nLeR   96 (653)
T COG0370          36 VTVEKKEGKL------KYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDAT-------------NLER   96 (653)
T ss_pred             eeEEEEEEEE------EecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccc-------------hHHH
Confidence            3444555555      566677999999998654      334555653  679999999963             3444


Q ss_pred             HHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCC
Q 018283          239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDR  318 (358)
Q Consensus       239 ~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~  318 (358)
                      .+.+.-+++.-    +.|+++++|+.|..+.+-..                   -|.++-.+                  
T Consensus        97 nLyltlQLlE~----g~p~ilaLNm~D~A~~~Gi~-------------------ID~~~L~~------------------  135 (653)
T COG0370          97 NLYLTLQLLEL----GIPMILALNMIDEAKKRGIR-------------------IDIEKLSK------------------  135 (653)
T ss_pred             HHHHHHHHHHc----CCCeEEEeccHhhHHhcCCc-------------------ccHHHHHH------------------
Confidence            55555555543    67999999999986553111                   12222111                  


Q ss_pred             CCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283          319 VDRVFKIYRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       319 ~~~~~~~~~tSA~d~~ni~~vf~~i~~~  346 (358)
                       .-.+....|+|+.|++++++.+.+.+.
T Consensus       136 -~LGvPVv~tvA~~g~G~~~l~~~i~~~  162 (653)
T COG0370         136 -LLGVPVVPTVAKRGEGLEELKRAIIEL  162 (653)
T ss_pred             -HhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence             113566789999999998888877653

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.46  E-value=2.2e-06  Score=82.64  Aligned_cols=121  Identities=13%  Similarity=0.152  Sum_probs=57.8

Q ss_pred             eEEEEEecCCCchhhhhHhhhhc-----CCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEE
Q 018283          187 EVYRLFDVGGQRNERRKWIHLFE-----GVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLF  260 (358)
Q Consensus       187 ~~l~i~D~~Gq~~~r~~w~~y~~-----~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv  260 (358)
                      -.+.+||++|-..-+-....|+.     ..|.+|++.+              +++.+. ..+...+-.    .++|+++|
T Consensus        86 pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s--------------~rf~~ndv~La~~i~~----~gK~fyfV  147 (376)
T PF05049_consen   86 PNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISS--------------ERFTENDVQLAKEIQR----MGKKFYFV  147 (376)
T ss_dssp             TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEES--------------SS--HHHHHHHHHHHH----TT-EEEEE
T ss_pred             CCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeC--------------CCCchhhHHHHHHHHH----cCCcEEEE
Confidence            35799999998766666666765     4566666654              444444 444455533    26899999


Q ss_pred             eeCCCc--hhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh--H
Q 018283          261 LNKFDI--FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL--V  336 (358)
Q Consensus       261 ~NK~Dl--~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n--i  336 (358)
                      -+|.|.  ..++-.. |        ..       -..++..+-|++.+.+.++...-     ..-.+|.+|..+-..  .
T Consensus       148 RTKvD~Dl~~~~~~~-p--------~~-------f~~e~~L~~IR~~c~~~L~k~gv-----~~P~VFLVS~~dl~~yDF  206 (376)
T PF05049_consen  148 RTKVDSDLYNERRRK-P--------RT-------FNEEKLLQEIRENCLENLQKAGV-----SEPQVFLVSSFDLSKYDF  206 (376)
T ss_dssp             E--HHHHHHHHHCC--S--------TT---------HHTHHHHHHHHHHHHHHCTT------SS--EEEB-TTTTTSTTH
T ss_pred             EecccccHhhhhccC-C--------cc-------cCHHHHHHHHHHHHHHHHHHcCC-----CcCceEEEeCCCcccCCh
Confidence            999995  3332111 1        00       12244555555555554432111     123467788886553  4


Q ss_pred             HHHHHHHHHH
Q 018283          337 KKTFKLVDET  346 (358)
Q Consensus       337 ~~vf~~i~~~  346 (358)
                      ..+.+.+.+.
T Consensus       207 p~L~~tL~~d  216 (376)
T PF05049_consen  207 PKLEETLEKD  216 (376)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444443

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR00101 ureG urease accessory protein UreG

Probab=98.46  E-value=3.6e-06  Score=74.96  Aligned_cols=26  Identities=4%  Similarity=-0.084  Sum_probs=22.4

Q ss_pred             EEEEEeeccChhhHHHHHHHHHHHHH
Q 018283          323 FKIYRTTALDPKLVKKTFKLVDETLR  348 (358)
Q Consensus       323 ~~~~~tSA~d~~ni~~vf~~i~~~i~  348 (358)
                      ..+++|||++|+|++++|+++.+..+
T Consensus       171 ~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       171 KPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            45789999999999999999987653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.45  E-value=4.5e-07  Score=83.38  Aligned_cols=97  Identities=8%  Similarity=0.203  Sum_probs=63.0

Q ss_pred             chhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCc
Q 018283          198 RNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLN  277 (358)
Q Consensus       198 ~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~  277 (358)
                      ++++.+.+.|+++++++++|+|+++         ...++.....|+..+ ..   .++|++||+||+||..++.      
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~---------p~~s~~~l~r~l~~~-~~---~~i~~vIV~NK~DL~~~~~------   84 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVL---------PELSLNQLDRFLVVA-EA---QNIEPIIVLNKIDLLDDED------   84 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCC---------CCCCHHHHHHHHHHH-HH---CCCCEEEEEECcccCCCHH------
Confidence            5677777889999999999999852         111333333334333 21   4689999999999953211      


Q ss_pred             ccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283          278 VCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       278 ~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~  345 (358)
                                       ...  +++ +.|..            ..+.++++||++++||+++|+.+.+
T Consensus        85 -----------------~~~--~~~-~~~~~------------~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        85 -----------------MEK--EQL-DIYRN------------IGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             -----------------HHH--HHH-HHHHH------------CCCeEEEEecCCchhHHHHHhhhcC
Confidence                             110  111 12221            1256788999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PTZ00416 elongation factor 2; Provisional

Probab=98.41  E-value=1.7e-06  Score=92.64  Aligned_cols=68  Identities=16%  Similarity=0.190  Sum_probs=51.0

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  264 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~  264 (358)
                      ++..+.+.||+|+..|-.-...-.+.+|++|+|+|.++         ...  ......++.+...    +.|+++|.||+
T Consensus        90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~---------g~~--~~t~~~~~~~~~~----~~p~iv~iNK~  154 (836)
T PTZ00416         90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVE---------GVC--VQTETVLRQALQE----RIRPVLFINKV  154 (836)
T ss_pred             CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCC---------CcC--ccHHHHHHHHHHc----CCCEEEEEECh
Confidence            46789999999999887777778899999999999641         111  1233455555442    57999999999


Q ss_pred             Cch
Q 018283          265 DIF  267 (358)
Q Consensus       265 Dl~  267 (358)
                      |+.
T Consensus       155 D~~  157 (836)
T PTZ00416        155 DRA  157 (836)
T ss_pred             hhh
Confidence            997

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.41  E-value=4.1e-06  Score=77.45  Aligned_cols=138  Identities=16%  Similarity=0.192  Sum_probs=73.3

Q ss_pred             cccceEEEEEecCCCchh---hhh---------HhhhhcCCcEEEEEEEccccccccccccccchHH-HHHHHHHHHHcC
Q 018283          183 KKSGEVYRLFDVGGQRNE---RRK---------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMM-ETKELFDWVLKQ  249 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~---r~~---------w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~-~~~~~~~~i~~~  249 (358)
                      ..+...+.++||+|--.-   |+-         ..+-..+||+++.|+|.++         .++-+. ..+..++..   
T Consensus       116 ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~---------tr~~l~p~vl~~l~~y---  183 (379)
T KOG1423|consen  116 TSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASA---------TRTPLHPRVLHMLEEY---  183 (379)
T ss_pred             ecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccC---------CcCccChHHHHHHHHH---
Confidence            456788999999996321   111         1123457999999999863         222221 123333333   


Q ss_pred             CCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE----EE
Q 018283          250 PCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF----KI  325 (358)
Q Consensus       250 ~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~----~~  325 (358)
                         .+.|-+|+.||.|....|..-.++...     -   ..|  .+....--+.++|...-..+..+  ..-.+    .+
T Consensus       184 ---s~ips~lvmnkid~~k~k~~Ll~l~~~-----L---t~g--~l~~~kl~v~~~f~~~p~~~~~~--~~~gwshfe~v  248 (379)
T KOG1423|consen  184 ---SKIPSILVMNKIDKLKQKRLLLNLKDL-----L---TNG--ELAKLKLEVQEKFTDVPSDEKWR--TICGWSHFERV  248 (379)
T ss_pred             ---hcCCceeeccchhcchhhhHHhhhHHh-----c---ccc--ccchhhhhHHHHhccCCcccccc--cccCcccceeE
Confidence               357889999999988765322121110     0   011  11111222334443221000000  00011    35


Q ss_pred             EEeeccChhhHHHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                      |.+||+.|++|+++=+++....
T Consensus       249 F~vSaL~G~GikdlkqyLmsqa  270 (379)
T KOG1423|consen  249 FMVSALYGEGIKDLKQYLMSQA  270 (379)
T ss_pred             EEEecccccCHHHHHHHHHhcC
Confidence            7799999999999988877654

>PRK00007 elongation factor G; Reviewed

Probab=98.41  E-value=4.2e-06  Score=88.09  Aligned_cols=72  Identities=11%  Similarity=0.035  Sum_probs=51.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ..++..+.+.||+|+..|-.-...-.+.+|++|+|+|.++         ..  .......+..+...    +.|++++.|
T Consensus        71 ~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~---------g~--~~qt~~~~~~~~~~----~~p~iv~vN  135 (693)
T PRK00007         71 FWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVG---------GV--EPQSETVWRQADKY----KVPRIAFVN  135 (693)
T ss_pred             EECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCC---------Cc--chhhHHHHHHHHHc----CCCEEEEEE
Confidence            5567899999999998776555556788999999999631         11  22234444444332    578999999


Q ss_pred             CCCchhh
Q 018283          263 KFDIFEK  269 (358)
Q Consensus       263 K~Dl~~e  269 (358)
                      |+|+.++
T Consensus       136 K~D~~~~  142 (693)
T PRK00007        136 KMDRTGA  142 (693)
T ss_pred             CCCCCCC
Confidence            9998753

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.37  E-value=2.7e-06  Score=91.19  Aligned_cols=68  Identities=15%  Similarity=0.146  Sum_probs=51.6

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  264 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~  264 (358)
                      .+..+++.||+|+..|-.-...-.+.+|++|+|+|.+         ....  ..+...++.+...    +.|++++.||+
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~---------~Gv~--~~t~~~~~~~~~~----~~p~i~~iNK~  160 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI---------EGVC--VQTETVLRQALGE----RIRPVLTVNKM  160 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECC---------CCCc--ccHHHHHHHHHHC----CCCEEEEEECC
Confidence            4678899999999999777777789999999999964         1211  1233455555443    67999999999


Q ss_pred             Cch
Q 018283          265 DIF  267 (358)
Q Consensus       265 Dl~  267 (358)
                      |+.
T Consensus       161 D~~  163 (843)
T PLN00116        161 DRC  163 (843)
T ss_pred             ccc
Confidence            997

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.36  E-value=5.2e-06  Score=78.00  Aligned_cols=122  Identities=15%  Similarity=0.230  Sum_probs=71.9

Q ss_pred             eEEEEEecCCCc-------hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHc-CCCCCCCcEE
Q 018283          187 EVYRLFDVGGQR-------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK-QPCFEKTSFM  258 (358)
Q Consensus       187 ~~l~i~D~~Gq~-------~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~-~~~~~~~~ii  258 (358)
                      -+|.+-|++|-=       ..--......+.+..+++|+|+|..+.       .+-.++...+..++-. ++.+.+.|.+
T Consensus       207 ~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~-------~dp~~~~~~i~~EL~~Y~~~L~~K~~i  279 (369)
T COG0536         207 ESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDG-------RDPIEDYQTIRNELEKYSPKLAEKPRI  279 (369)
T ss_pred             CcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccC-------CCHHHHHHHHHHHHHHhhHHhccCceE
Confidence            457888887651       112234445678899999999975432       1222222222222221 3556788999


Q ss_pred             EEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHH
Q 018283          259 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK  338 (358)
Q Consensus       259 lv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~  338 (358)
                      |++||+|+....                      +..+...+++.+.+.             ....+| +||.++++++.
T Consensus       280 vv~NKiD~~~~~----------------------e~~~~~~~~l~~~~~-------------~~~~~~-ISa~t~~g~~~  323 (369)
T COG0536         280 VVLNKIDLPLDE----------------------EELEELKKALAEALG-------------WEVFYL-ISALTREGLDE  323 (369)
T ss_pred             EEEeccCCCcCH----------------------HHHHHHHHHHHHhcC-------------CCccee-eehhcccCHHH
Confidence            999999954221                      122333333332221             112222 99999999999


Q ss_pred             HHHHHHHHHHHhh
Q 018283          339 TFKLVDETLRRRH  351 (358)
Q Consensus       339 vf~~i~~~i~~~~  351 (358)
                      +...+.+.+-...
T Consensus       324 L~~~~~~~l~~~~  336 (369)
T COG0536         324 LLRALAELLEETK  336 (369)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999988876553

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.36  E-value=4.8e-06  Score=81.06  Aligned_cols=114  Identities=12%  Similarity=0.106  Sum_probs=75.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +++.+.|++.||+|+-.|.---..-+..|.++++|||.|           ..--..++..+-..+.+    +.-|+-|.|
T Consensus        72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAs-----------QGveAQTlAN~YlAle~----~LeIiPViN  136 (603)
T COG0481          72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDAS-----------QGVEAQTLANVYLALEN----NLEIIPVLN  136 (603)
T ss_pred             CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECc-----------cchHHHHHHHHHHHHHc----CcEEEEeee
Confidence            457899999999999888665566677899999999964           11112223333333333    567899999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+||+.+                        +.++..+-|.+-+. +     +      .-....+|||+|.||.+++++
T Consensus       137 KIDLP~A------------------------dpervk~eIe~~iG-i-----d------~~dav~~SAKtG~gI~~iLe~  180 (603)
T COG0481         137 KIDLPAA------------------------DPERVKQEIEDIIG-I-----D------ASDAVLVSAKTGIGIEDVLEA  180 (603)
T ss_pred             cccCCCC------------------------CHHHHHHHHHHHhC-C-----C------cchheeEecccCCCHHHHHHH
Confidence            9999754                        22333333333221 0     0      112456899999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      |++.|
T Consensus       181 Iv~~i  185 (603)
T COG0481         181 IVEKI  185 (603)
T ss_pred             HHhhC
Confidence            98876

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.34  E-value=1.9e-05  Score=69.35  Aligned_cols=113  Identities=19%  Similarity=0.351  Sum_probs=63.5

Q ss_pred             EEEEecCCC------chhhhhHh----hhhcC---CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283          189 YRLFDVGGQ------RNERRKWI----HLFEG---VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT  255 (358)
Q Consensus       189 l~i~D~~Gq------~~~r~~w~----~y~~~---~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~  255 (358)
                      +.+.|++|=      ...+..|.    +|+++   -.+++.++|.-.         .....+  .+.++-+..    .+.
T Consensus        72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~---------~~~~~D--~em~~~l~~----~~i  136 (200)
T COG0218          72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARH---------PPKDLD--REMIEFLLE----LGI  136 (200)
T ss_pred             EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCC---------CCcHHH--HHHHHHHHH----cCC
Confidence            789999873      33455554    46653   467788888631         111111  133333322    268


Q ss_pred             cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283          256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL  335 (358)
Q Consensus       256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n  335 (358)
                      |+++++||+|-...                       .........+.+.+.-      .+  ....+ +..+|+..+.+
T Consensus       137 ~~~vv~tK~DKi~~-----------------------~~~~k~l~~v~~~l~~------~~--~~~~~-~~~~ss~~k~G  184 (200)
T COG0218         137 PVIVVLTKADKLKK-----------------------SERNKQLNKVAEELKK------PP--PDDQW-VVLFSSLKKKG  184 (200)
T ss_pred             CeEEEEEccccCCh-----------------------hHHHHHHHHHHHHhcC------CC--Cccce-EEEEecccccC
Confidence            99999999996432                       1122223333333221      11  11222 66788888999


Q ss_pred             HHHHHHHHHHHHH
Q 018283          336 VKKTFKLVDETLR  348 (358)
Q Consensus       336 i~~vf~~i~~~i~  348 (358)
                      ++++-..|...+.
T Consensus       185 i~~l~~~i~~~~~  197 (200)
T COG0218         185 IDELKAKILEWLK  197 (200)
T ss_pred             HHHHHHHHHHHhh
Confidence            8888887776653

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.31  E-value=1.2e-05  Score=74.01  Aligned_cols=27  Identities=26%  Similarity=0.377  Sum_probs=23.4

Q ss_pred             HHHhhccccEEEecCCCCChhHHHHHH
Q 018283           41 TKAEKHIQKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        41 ~~~~~~~~killlG~~~sGKSTi~kq~   67 (358)
                      ++.....++|+|+|.+|+||||+++.+
T Consensus        25 ~~~~~~~~~IllvG~tGvGKSSliNaL   51 (249)
T cd01853          25 KEELDFSLTILVLGKTGVGKSSTINSI   51 (249)
T ss_pred             hhhccCCeEEEEECCCCCcHHHHHHHH
Confidence            345567899999999999999999986

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=98.30  E-value=3.5e-06  Score=82.46  Aligned_cols=125  Identities=18%  Similarity=0.210  Sum_probs=82.8

Q ss_pred             cccceEEEEEecCCCch----hhhhHhhhh-----cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRN----ERRKWIHLF-----EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE  253 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~----~r~~w~~y~-----~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~  253 (358)
                      +.+-..+++.||+|--.    .|......-     .=-.+|+|+.|+|+        ..--++.+-..+|++|-  |.|.
T Consensus       211 dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe--------~CGySva~QvkLfhsIK--pLFa  280 (620)
T KOG1490|consen  211 DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSE--------MCGYSVAAQVKLYHSIK--PLFA  280 (620)
T ss_pred             hhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechh--------hhCCCHHHHHHHHHHhH--HHhc
Confidence            55557889999998621    122211111     11357999999984        44567788899999984  6789


Q ss_pred             CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283          254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP  333 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~  333 (358)
                      |.|+|+++||+|+..-                       +++.+.-+-+.....+           +..+.++.||+.+-
T Consensus       281 NK~~IlvlNK~D~m~~-----------------------edL~~~~~~ll~~~~~-----------~~~v~v~~tS~~~e  326 (620)
T KOG1490|consen  281 NKVTILVLNKIDAMRP-----------------------EDLDQKNQELLQTIID-----------DGNVKVVQTSCVQE  326 (620)
T ss_pred             CCceEEEeecccccCc-----------------------cccCHHHHHHHHHHHh-----------ccCceEEEecccch
Confidence            9999999999998531                       2222222222222221           22367889999999


Q ss_pred             hhHHHHHHHHHHHHHHhh
Q 018283          334 KLVKKTFKLVDETLRRRH  351 (358)
Q Consensus       334 ~ni~~vf~~i~~~i~~~~  351 (358)
                      +||-.|=...++.++...
T Consensus       327 egVm~Vrt~ACe~LLa~R  344 (620)
T KOG1490|consen  327 EGVMDVRTTACEALLAAR  344 (620)
T ss_pred             hceeeHHHHHHHHHHHHH
Confidence            999998888777777543

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.25  E-value=6.6e-06  Score=87.12  Aligned_cols=71  Identities=21%  Similarity=0.267  Sum_probs=51.0

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ..+..+.+.||+|+..|........+.+|++|+|+|..+         ..  .......+..+...    +.|.+++.||
T Consensus        84 ~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~---------g~--~~~t~~~~~~~~~~----~~~~iv~iNK  148 (731)
T PRK07560         84 GKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVE---------GV--MPQTETVLRQALRE----RVKPVLFINK  148 (731)
T ss_pred             CCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCC---------CC--CccHHHHHHHHHHc----CCCeEEEEEC
Confidence            356789999999999988777788899999999999631         11  11233444443332    3577999999


Q ss_pred             CCchhh
Q 018283          264 FDIFEK  269 (358)
Q Consensus       264 ~Dl~~e  269 (358)
                      +|+...
T Consensus       149 ~D~~~~  154 (731)
T PRK07560        149 VDRLIK  154 (731)
T ss_pred             chhhcc
Confidence            998644

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.25  E-value=2.1e-05  Score=70.65  Aligned_cols=75  Identities=15%  Similarity=0.221  Sum_probs=43.0

Q ss_pred             cccceEEEEEecCCCch-------hhhhHhh----hhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283          183 KKSGEVYRLFDVGGQRN-------ERRKWIH----LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  251 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~-------~r~~w~~----y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~  251 (358)
                      ...+..+.++||+|--.       .......    +..+.+++|||+.++.|.         +.-...++++..++....
T Consensus        45 ~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t---------~~~~~~l~~l~~~FG~~~  115 (212)
T PF04548_consen   45 EVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFT---------EEDREVLELLQEIFGEEI  115 (212)
T ss_dssp             EETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-S---------HHHHHHHHHHHHHHCGGG
T ss_pred             eecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcch---------HHHHHHHHHHHHHccHHH
Confidence            44667889999998421       1111222    345799999999985332         223345666777766443


Q ss_pred             CCCCcEEEEeeCCCchh
Q 018283          252 FEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       252 ~~~~~iilv~NK~Dl~~  268 (358)
                      .  ..++||++..|-+.
T Consensus       116 ~--k~~ivvfT~~d~~~  130 (212)
T PF04548_consen  116 W--KHTIVVFTHADELE  130 (212)
T ss_dssp             G--GGEEEEEEEGGGGT
T ss_pred             H--hHhhHHhhhccccc
Confidence            3  25777788777543

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.25  E-value=2.7e-06  Score=68.77  Aligned_cols=55  Identities=13%  Similarity=0.022  Sum_probs=34.9

Q ss_pred             hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhh
Q 018283          202 RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEK  269 (358)
Q Consensus       202 ~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~e  269 (358)
                      .....+++++++++.|++.+          ..+++...  |...+... ...+.|+++++||.|+.++
T Consensus        38 ~~~~~~~~s~~~~~~v~~~~----------~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~   92 (124)
T smart00010       38 VYDPTSYESFDVVLQCWRVD----------DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEE   92 (124)
T ss_pred             hccccccCCCCEEEEEEEcc----------CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhh
Confidence            33456788999999999863          34444332  44333322 1236789999999998543

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=1.3e-05  Score=81.56  Aligned_cols=138  Identities=18%  Similarity=0.243  Sum_probs=83.8

Q ss_pred             EEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCch
Q 018283          188 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF  267 (358)
Q Consensus       188 ~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~  267 (358)
                      -+.+.||.|+++|..+....-.-|+.+|+|+|+-.        .-.....+++.+++.       .++|+|+.+||.|.+
T Consensus       541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImh--------GlepqtiESi~lLR~-------rktpFivALNKiDRL  605 (1064)
T KOG1144|consen  541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMH--------GLEPQTIESINLLRM-------RKTPFIVALNKIDRL  605 (1064)
T ss_pred             eeEEecCCCchhhhhhhhccccccceEEEEeehhc--------cCCcchhHHHHHHHh-------cCCCeEEeehhhhhh
Confidence            46789999999999998888889999999999831        122344556665543       378999999999975


Q ss_pred             hh-h-hccCCCcccccccccccCCCCc--ccHHHHHHHHHHHHHH------HhhhcCCCCCCCceEEEEEeeccChhhHH
Q 018283          268 EK-K-VLKVPLNVCEWFKDYQPVSTGK--QEIENAYEFVKKKFEE------LYFQSTAPDRVDRVFKIYRTTALDPKLVK  337 (358)
Q Consensus       268 ~e-k-i~~~~l~~~~~f~~y~~~~~g~--~~~~~~~~~i~~~f~~------~~~~~~~~~~~~~~~~~~~tSA~d~~ni~  337 (358)
                      -. + ....++...  +.+.    +..  ..+..-.+-|...|.+      ++..|..   ..+.+.+.-|||..|++|-
T Consensus       606 Ygwk~~p~~~i~~~--lkkQ----~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~---~~~~vsiVPTSA~sGeGip  676 (1064)
T KOG1144|consen  606 YGWKSCPNAPIVEA--LKKQ----KKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKE---MGETVSIVPTSAISGEGIP  676 (1064)
T ss_pred             cccccCCCchHHHH--HHHh----hHHHHHHHHHHHHHHHHHHHHcccchhheeeccc---ccceEEeeecccccCCCcH
Confidence            21 1 111111000  0000    010  1223333344444432      2222222   2344556669999999999


Q ss_pred             HHHHHHHHHHHH
Q 018283          338 KTFKLVDETLRR  349 (358)
Q Consensus       338 ~vf~~i~~~i~~  349 (358)
                      +++..++..-..
T Consensus       677 dLl~llv~ltQk  688 (1064)
T KOG1144|consen  677 DLLLLLVQLTQK  688 (1064)
T ss_pred             HHHHHHHHHHHH
Confidence            999988876543

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.22  E-value=2e-05  Score=70.45  Aligned_cols=24  Identities=4%  Similarity=0.026  Sum_probs=21.2

Q ss_pred             EEEEEeeccChhhHHHHHHHHHHH
Q 018283          323 FKIYRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       323 ~~~~~tSA~d~~ni~~vf~~i~~~  346 (358)
                      ..++.+||++++|++++|+++.+.
T Consensus       182 ~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       182 AEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            457889999999999999998764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd01882 BMS1 Bms1

Probab=98.19  E-value=5.1e-05  Score=68.87  Aligned_cols=66  Identities=15%  Similarity=0.145  Sum_probs=39.3

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc-EEEEeeC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFLNK  263 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-iilv~NK  263 (358)
                      .+..+.+.|++|.-  ... ....+.+|.++||+|.+.         ....  .....+..+..    .+.| +++|+||
T Consensus        81 ~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~---------~~~~--~~~~i~~~l~~----~g~p~vi~VvnK  142 (225)
T cd01882          81 KKRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDASF---------GFEM--ETFEFLNILQV----HGFPRVMGVLTH  142 (225)
T ss_pred             CCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCc---------CCCH--HHHHHHHHHHH----cCCCeEEEEEec
Confidence            45678899999863  222 233578999999999742         1111  11222333222    1356 4569999


Q ss_pred             CCchh
Q 018283          264 FDIFE  268 (358)
Q Consensus       264 ~Dl~~  268 (358)
                      .|+.+
T Consensus       143 ~D~~~  147 (225)
T cd01882         143 LDLFK  147 (225)
T ss_pred             cccCC
Confidence            99863

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.19  E-value=2.5e-05  Score=77.34  Aligned_cols=116  Identities=11%  Similarity=0.038  Sum_probs=73.3

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  264 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~  264 (358)
                      ++-++++.||+|+.-|..+...=-.-+|.+|+||+.        |+.-.....+++.   ..    ...++|+++..||+
T Consensus       199 ~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAa--------dDGVmpQT~EaIk---hA----k~A~VpiVvAinKi  263 (683)
T KOG1145|consen  199 SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAA--------DDGVMPQTLEAIK---HA----KSANVPIVVAINKI  263 (683)
T ss_pred             CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEc--------cCCccHhHHHHHH---HH----HhcCCCEEEEEecc
Confidence            446789999999999988887666678899999985        2322333333333   32    22478999999999


Q ss_pred             CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283          265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD  344 (358)
Q Consensus       265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~  344 (358)
                      |-.++.+.                        .++.-+...=..+       ..-.-.+.+..+||++|+|+..+-+++.
T Consensus       264 Dkp~a~pe------------------------kv~~eL~~~gi~~-------E~~GGdVQvipiSAl~g~nl~~L~eail  312 (683)
T KOG1145|consen  264 DKPGANPE------------------------KVKRELLSQGIVV-------EDLGGDVQVIPISALTGENLDLLEEAIL  312 (683)
T ss_pred             CCCCCCHH------------------------HHHHHHHHcCccH-------HHcCCceeEEEeecccCCChHHHHHHHH
Confidence            97654321                        1111111100000       0012246778899999999999888765


Q ss_pred             HH
Q 018283          345 ET  346 (358)
Q Consensus       345 ~~  346 (358)
                      -.
T Consensus       313 l~  314 (683)
T KOG1145|consen  313 LL  314 (683)
T ss_pred             HH
Confidence            43

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.17  E-value=3e-05  Score=73.08  Aligned_cols=24  Identities=29%  Similarity=0.527  Sum_probs=21.6

Q ss_pred             hhccccEEEecCCCCChhHHHHHH
Q 018283           44 EKHIQKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        44 ~~~~~killlG~~~sGKSTi~kq~   67 (358)
                      ....++|+|+|.+|+||||+++.+
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsI   58 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSI   58 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHH
Confidence            456889999999999999999986

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.16  E-value=3.5e-05  Score=70.65  Aligned_cols=130  Identities=17%  Similarity=0.219  Sum_probs=76.9

Q ss_pred             cceEEEEEecCCCch-------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcE
Q 018283          185 SGEVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF  257 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~-------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~i  257 (358)
                      ..-.+.+||++|-+.       +|.+...|....|.++++.+..+           .-+.-...++..+.-..  -+.++
T Consensus        85 ~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~d-----------raL~~d~~f~~dVi~~~--~~~~~  151 (296)
T COG3596          85 DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADD-----------RALGTDEDFLRDVIILG--LDKRV  151 (296)
T ss_pred             cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCC-----------ccccCCHHHHHHHHHhc--cCcee
Confidence            345789999998865       78888899999998888888632           11112234455554422  13789


Q ss_pred             EEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHH
Q 018283          258 MLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK  337 (358)
Q Consensus       258 ilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~  337 (358)
                      +++.|..|.... .       +.|  ++    .|........+|+.++-..+.+....    -++  ++..++-.+=|++
T Consensus       152 i~~VtQ~D~a~p-~-------~~W--~~----~~~~p~~a~~qfi~~k~~~~~~~~q~----V~p--V~~~~~r~~wgl~  211 (296)
T COG3596         152 LFVVTQADRAEP-G-------REW--DS----AGHQPSPAIKQFIEEKAEALGRLFQE----VKP--VVAVSGRLPWGLK  211 (296)
T ss_pred             EEEEehhhhhcc-c-------ccc--cc----ccCCCCHHHHHHHHHHHHHHHHHHhh----cCC--eEEeccccCccHH
Confidence            999999997431 1       233  12    12222334445555555444322111    122  3344556777888


Q ss_pred             HHHHHHHHHH
Q 018283          338 KTFKLVDETL  347 (358)
Q Consensus       338 ~vf~~i~~~i  347 (358)
                      .+...++..+
T Consensus       212 ~l~~ali~~l  221 (296)
T COG3596         212 ELVRALITAL  221 (296)
T ss_pred             HHHHHHHHhC
Confidence            8888877654

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.15  E-value=2.8e-05  Score=75.72  Aligned_cols=121  Identities=17%  Similarity=0.166  Sum_probs=80.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ..+++.++|.||+|+..|----..-..=+|+++++||.++           .-+-...-.++..+..    +.+-|+|.|
T Consensus        64 ~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~E-----------GpMPQTrFVlkKAl~~----gL~PIVVvN  128 (603)
T COG1217          64 NYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-----------GPMPQTRFVLKKALAL----GLKPIVVIN  128 (603)
T ss_pred             ecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEccc-----------CCCCchhhhHHHHHHc----CCCcEEEEe
Confidence            6788999999999999887777777788999999999642           2222222334444432    334567789


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh---------
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP---------  333 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~---------  333 (358)
                      |.|...++                        .+++.+-....|.++...     ..+-.+.+.|.||.+|         
T Consensus       129 KiDrp~Ar------------------------p~~Vvd~vfDLf~~L~A~-----deQLdFPivYAS~~~G~a~~~~~~~  179 (603)
T COG1217         129 KIDRPDAR------------------------PDEVVDEVFDLFVELGAT-----DEQLDFPIVYASARNGTASLDPEDE  179 (603)
T ss_pred             CCCCCCCC------------------------HHHHHHHHHHHHHHhCCC-----hhhCCCcEEEeeccCceeccCcccc
Confidence            99987654                        244555555667666321     1234466677787765         


Q ss_pred             -hhHHHHHHHHHHHH
Q 018283          334 -KLVKKTFKLVDETL  347 (358)
Q Consensus       334 -~ni~~vf~~i~~~i  347 (358)
                       .++.-+|+.|.+.+
T Consensus       180 ~~~m~pLfe~I~~hv  194 (603)
T COG1217         180 ADDMAPLFETILDHV  194 (603)
T ss_pred             ccchhHHHHHHHHhC
Confidence             46788888877665

>cd01855 YqeH YqeH

Probab=98.13  E-value=1.1e-05  Score=70.99  Aligned_cols=100  Identities=11%  Similarity=0.102  Sum_probs=61.8

Q ss_pred             hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCccc
Q 018283          200 ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVC  279 (358)
Q Consensus       200 ~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~  279 (358)
                      ++..|..|+++++++|+|+|+++++.         ...   ..+..     ...+.|+++|+||+|+..+.         
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~---------~~~---~~l~~-----~~~~~~~ilV~NK~Dl~~~~---------   77 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG---------SLI---PRLRL-----FGGNNPVILVGNKIDLLPKD---------   77 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC---------ccc---hhHHH-----hcCCCcEEEEEEchhcCCCC---------
Confidence            78999999999999999999875321         111   11111     12357999999999985321         


Q ss_pred             ccccccccCCCCcccHHHHHHHHH-HHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHH
Q 018283          280 EWFKDYQPVSTGKQEIENAYEFVK-KKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       280 ~~f~~y~~~~~g~~~~~~~~~~i~-~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                                   ........|.. ..+...     .    -....++.+||+++.|++++++.+.+.+
T Consensus        78 -------------~~~~~~~~~~~~~~~~~~-----~----~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          78 -------------KNLVRIKNWLRAKAAAGL-----G----LKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             -------------CCHHHHHHHHHHHHHhhc-----C----CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence                         11122222321 111110     0    0012367899999999999999998765

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.13  E-value=1.7e-05  Score=85.75  Aligned_cols=64  Identities=19%  Similarity=0.208  Sum_probs=46.9

Q ss_pred             EEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCch
Q 018283          189 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF  267 (358)
Q Consensus       189 l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~  267 (358)
                      +.+|||+||+.|.......+..+|++|+|+|.++        .-.....+++..+.   .    .++|+++++||+|+.
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~--------Gi~~qT~e~I~~lk---~----~~iPiIVViNKiDL~  591 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINE--------GFKPQTIEAINILR---Q----YKTPFVVAANKIDLI  591 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcc--------cCCHhHHHHHHHHH---H----cCCCEEEEEECCCCc
Confidence            8999999999998888888899999999999752        11111222233222   2    257999999999985

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.13  E-value=6.4e-05  Score=71.22  Aligned_cols=24  Identities=13%  Similarity=0.325  Sum_probs=20.7

Q ss_pred             EEEEeeccChhhHHHHHHHHHHHH
Q 018283          324 KIYRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       324 ~~~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                      .++.+||++++++.++++++.+..
T Consensus       214 ~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       214 PVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             CEEEEEccCCCCHHHHHHHHHHHH
Confidence            367899999999999999998863

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=98.09  E-value=0.00011  Score=68.62  Aligned_cols=71  Identities=10%  Similarity=0.194  Sum_probs=44.1

Q ss_pred             CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283          254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP  333 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~  333 (358)
                      ++|+++|.+|+|...--...         .+|         .++-++||.......-.+        .....++||++.+
T Consensus       222 Gi~vlVV~TK~D~~s~leke---------~ey---------rDehfdfiq~~lRkFCLr--------~GaaLiyTSvKE~  275 (473)
T KOG3905|consen  222 GIPVLVVCTKCDAVSVLEKE---------HEY---------RDEHFDFIQSHLRKFCLR--------YGAALIYTSVKET  275 (473)
T ss_pred             CCcEEEEEeccchhhHhhhc---------chh---------hHHHHHHHHHHHHHHHHH--------cCceeEEeecccc
Confidence            47999999999985321100         022         233344444433322111        1245678999999


Q ss_pred             hhHHHHHHHHHHHHHHh
Q 018283          334 KLVKKTFKLVDETLRRR  350 (358)
Q Consensus       334 ~ni~~vf~~i~~~i~~~  350 (358)
                      .|++-++.+|+..+..-
T Consensus       276 KNidllyKYivhr~yG~  292 (473)
T KOG3905|consen  276 KNIDLLYKYIVHRSYGF  292 (473)
T ss_pred             cchHHHHHHHHHHhcCc
Confidence            99999999998877643

>COG2262 HflX GTPases [General function prediction only]

Probab=98.07  E-value=0.00023  Score=68.69  Aligned_cols=110  Identities=15%  Similarity=0.139  Sum_probs=64.7

Q ss_pred             ceEEEEEecCCCchhhhhHhh-hh-------cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcE
Q 018283          186 GEVYRLFDVGGQRNERRKWIH-LF-------EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF  257 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r~~w~~-y~-------~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~i  257 (358)
                      +..+.+-||-|==+--+-|.- -|       ..+|.++.|+|.|+       ..-...+..+.+.+..+    ...+.|+
T Consensus       239 g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSd-------p~~~~~~~~v~~vL~el----~~~~~p~  307 (411)
T COG2262         239 GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASD-------PEILEKLEAVEDVLAEI----GADEIPI  307 (411)
T ss_pred             CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCC-------hhHHHHHHHHHHHHHHc----CCCCCCE
Confidence            455677788774221111111 12       36899999999873       22223344444444444    3345899


Q ss_pred             EEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHH
Q 018283          258 MLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK  337 (358)
Q Consensus       258 ilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~  337 (358)
                      ++++||.|+.......                      .....                   ..+ ....+||++++|++
T Consensus       308 i~v~NKiD~~~~~~~~----------------------~~~~~-------------------~~~-~~v~iSA~~~~gl~  345 (411)
T COG2262         308 ILVLNKIDLLEDEEIL----------------------AELER-------------------GSP-NPVFISAKTGEGLD  345 (411)
T ss_pred             EEEEecccccCchhhh----------------------hhhhh-------------------cCC-CeEEEEeccCcCHH
Confidence            9999999975431100                      00000                   001 24568999999999


Q ss_pred             HHHHHHHHHHH
Q 018283          338 KTFKLVDETLR  348 (358)
Q Consensus       338 ~vf~~i~~~i~  348 (358)
                      .+.+.|.+.+-
T Consensus       346 ~L~~~i~~~l~  356 (411)
T COG2262         346 LLRERIIELLS  356 (411)
T ss_pred             HHHHHHHHHhh
Confidence            99988888775

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.01  E-value=2.6e-05  Score=75.85  Aligned_cols=102  Identities=14%  Similarity=0.204  Sum_probs=69.1

Q ss_pred             CchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCC
Q 018283          197 QRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPL  276 (358)
Q Consensus       197 q~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l  276 (358)
                      ++.|+.+...|+++++.+++|+|+.++...         +   ...+...+     .+.|+++|+||+||....      
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s---------~---~~~l~~~~-----~~~piilV~NK~DLl~k~------  106 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS---------L---IPELKRFV-----GGNPVLLVGNKIDLLPKS------  106 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCCC---------c---cHHHHHHh-----CCCCEEEEEEchhhCCCC------
Confidence            568888889999999999999998654321         1   12222222     257999999999995321      


Q ss_pred             cccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283          277 NVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       277 ~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~  346 (358)
                                      ...++..+|+.+.+....         -....++.+||+++.|++++|+.+.+.
T Consensus       107 ----------------~~~~~~~~~l~~~~k~~g---------~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       107 ----------------VNLSKIKEWMKKRAKELG---------LKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             ----------------CCHHHHHHHHHHHHHHcC---------CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence                            224556667665554320         011246789999999999999998653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.97  E-value=1.7e-05  Score=78.43  Aligned_cols=119  Identities=17%  Similarity=0.178  Sum_probs=79.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +++...+.+.|.||..     -..|-.-++++||||.+          .+.+++.....++..+.....-...|+++++.
T Consensus        73 ~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~----------~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgt  137 (749)
T KOG0705|consen   73 DGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSV----------EDEQSFQAVQALAHEMSSYRNISDLPLILVGT  137 (749)
T ss_pred             eccceEeeeecccCCc-----hhhhhhhccceEEEEEe----------ccccCHHHHHHHHhhcccccccccchHHhhcC
Confidence            7788889999999943     24566789999999997          56677766655555554433344678888887


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      + |....+...+                  ..-.++.....               +.+.+.+|+|||+.|-|+..+|..
T Consensus       138 q-d~iS~~~~rv------------------~~da~~r~l~~---------------~~krcsy~et~atyGlnv~rvf~~  183 (749)
T KOG0705|consen  138 Q-DHISAKRPRV------------------ITDDRARQLSA---------------QMKRCSYYETCATYGLNVERVFQE  183 (749)
T ss_pred             c-chhhcccccc------------------cchHHHHHHHH---------------hcCccceeecchhhhhhHHHHHHH
Confidence            6 5444332211                  11122222211               124577899999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +...++..
T Consensus       184 ~~~k~i~~  191 (749)
T KOG0705|consen  184 VAQKIVQL  191 (749)
T ss_pred             HHHHHHHH
Confidence            98887654

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=0.00022  Score=71.36  Aligned_cols=92  Identities=15%  Similarity=0.156  Sum_probs=61.3

Q ss_pred             eeeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHH
Q 018283          164 ARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF  243 (358)
Q Consensus       164 ~~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~  243 (358)
                      .|+-|+.+....|      +.....++|.|.+|++.|-+-...=-..+|+.|+|+|.+ ++..-..-...+...+...++
T Consensus       238 erGvTm~v~~~~f------es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s-~~~FE~gfd~~gQtrEha~ll  310 (603)
T KOG0458|consen  238 ERGVTMDVKTTWF------ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAS-TGEFESGFDPGGQTREHALLL  310 (603)
T ss_pred             hcceeEEeeeEEE------ecCceeEEEecCCCccccchhhhccccccceEEEEEECC-cchhhhccCCCCchHHHHHHH
Confidence            3455666667777      777888999999999988777666666789999999975 111100001223444444444


Q ss_pred             HHHHcCCCCCCCcEEEEeeCCCchh
Q 018283          244 DWVLKQPCFEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       244 ~~i~~~~~~~~~~iilv~NK~Dl~~  268 (358)
                      ..+      .-..+++..||+|+.+
T Consensus       311 r~L------gi~qlivaiNKmD~V~  329 (603)
T KOG0458|consen  311 RSL------GISQLIVAINKMDLVS  329 (603)
T ss_pred             HHc------CcceEEEEeecccccC
Confidence            443      2457899999999864

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=97.93  E-value=0.00025  Score=70.88  Aligned_cols=73  Identities=15%  Similarity=0.225  Sum_probs=44.2

Q ss_pred             CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283          254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP  333 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~  333 (358)
                      ++||+||++|.|.... +...    .    +|         -++-++||......+--+        .....+|||++..
T Consensus       196 Gipi~VV~tksD~~~~-Lek~----~----~~---------~~e~~DfIqq~LR~~cL~--------yGAsL~yts~~~~  249 (472)
T PF05783_consen  196 GIPIVVVCTKSDKIET-LEKE----T----DW---------KEEHFDFIQQYLRTFCLK--------YGASLIYTSVKEE  249 (472)
T ss_pred             CcceEEEEecccHHHH-Hhhh----c----cc---------chhhHHHHHHHHHHHHHh--------cCCeEEEeecccc
Confidence            3799999999998652 2110    0    11         122344444333332211        2345677999999


Q ss_pred             hhHHHHHHHHHHHHHHhhh
Q 018283          334 KLVKKTFKLVDETLRRRHL  352 (358)
Q Consensus       334 ~ni~~vf~~i~~~i~~~~~  352 (358)
                      .|++.++.+|...+....+
T Consensus       250 ~n~~~L~~yi~h~l~~~~f  268 (472)
T PF05783_consen  250 KNLDLLYKYILHRLYGFPF  268 (472)
T ss_pred             ccHHHHHHHHHHHhccCCC
Confidence            9999999998877765433

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK09602 translation-associated GTPase; Reviewed

Probab=97.85  E-value=4.7e-05  Score=74.75  Aligned_cols=37  Identities=22%  Similarity=0.164  Sum_probs=27.8

Q ss_pred             cceEEEEEecCCC----chhhhhHhhh---hcCCcEEEEEEEcc
Q 018283          185 SGEVYRLFDVGGQ----RNERRKWIHL---FEGVSAVIFCAAIS  221 (358)
Q Consensus       185 ~~~~l~i~D~~Gq----~~~r~~w~~y---~~~~~~iIfv~dls  221 (358)
                      ..+.+++||++|.    ...+.+-..+   ++++|++++|+|.+
T Consensus        70 ~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         70 RFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             ceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            3477999999994    3344433344   88999999999997

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.00024  Score=63.89  Aligned_cols=124  Identities=19%  Similarity=0.253  Sum_probs=74.0

Q ss_pred             cceEEEEEecCCCchhhhh---HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC--CCCCCCcEEE
Q 018283          185 SGEVYRLFDVGGQRNERRK---WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ--PCFEKTSFML  259 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~---w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~--~~~~~~~iil  259 (358)
                      .-+.|.+||.+||-.+-.-   ....|+++-+.|||+|.           . ..+.+++.-+...+..  ..-+++.+=+
T Consensus        73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDa-----------Q-ddy~eala~L~~~v~raykvNp~in~EV  140 (347)
T KOG3887|consen   73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDA-----------Q-DDYMEALARLHMTVERAYKVNPNINFEV  140 (347)
T ss_pred             hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEec-----------h-HHHHHHHHHHHHHhhheeecCCCceEEE
Confidence            4478999999999765322   34468999999999984           2 3333444444333332  2235778889


Q ss_pred             EeeCCCchhh--hhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHH
Q 018283          260 FLNKFDIFEK--KVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK  337 (358)
Q Consensus       260 v~NK~Dl~~e--ki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~  337 (358)
                      +..|.|-+.+  |+.. .         .       +-..++.+-+...           +..+-.+.+|.||-.| ..|=
T Consensus       141 fiHKvDGLsdd~kiet-q---------r-------dI~qr~~d~l~d~-----------gle~v~vsf~LTSIyD-HSIf  191 (347)
T KOG3887|consen  141 FIHKVDGLSDDFKIET-Q---------R-------DIHQRTNDELADA-----------GLEKVQVSFYLTSIYD-HSIF  191 (347)
T ss_pred             EEEeccCCchhhhhhh-H---------H-------HHHHHhhHHHHhh-----------hhccceEEEEEeeecc-hHHH
Confidence            9999998754  2211 0         0       0001111111111           1123468889899887 4677


Q ss_pred             HHHHHHHHHHHH
Q 018283          338 KTFKLVDETLRR  349 (358)
Q Consensus       338 ~vf~~i~~~i~~  349 (358)
                      ++|..|+..++.
T Consensus       192 EAFSkvVQkLip  203 (347)
T KOG3887|consen  192 EAFSKVVQKLIP  203 (347)
T ss_pred             HHHHHHHHHHhh
Confidence            888888777664

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.81  E-value=0.00055  Score=64.09  Aligned_cols=24  Identities=8%  Similarity=0.108  Sum_probs=20.8

Q ss_pred             EEEEEeeccChhhHHHHHHHHHHH
Q 018283          323 FKIYRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       323 ~~~~~tSA~d~~ni~~vf~~i~~~  346 (358)
                      ..++.+||+++++++++.+++.+.
T Consensus       264 a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        264 IEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHh
Confidence            457889999999999999998763

>cd01859 MJ1464 MJ1464

Probab=97.74  E-value=9.1e-05  Score=62.94  Aligned_cols=95  Identities=14%  Similarity=0.149  Sum_probs=57.9

Q ss_pred             hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCccc
Q 018283          200 ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVC  279 (358)
Q Consensus       200 ~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~  279 (358)
                      +|+++.++.+++|.+|+|+|.++..      ...+     ..+. .....   .+.|+++++||+|+..+.         
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~------~~~~-----~~l~-~~~~~---~~~p~iiv~NK~Dl~~~~---------   57 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPE------LTRS-----RKLE-RYVLE---LGKKLLIVLNKADLVPKE---------   57 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCc------ccCC-----HHHH-HHHHh---CCCcEEEEEEhHHhCCHH---------
Confidence            4678899999999999999975311      0111     1111 11111   257999999999984321         


Q ss_pred             ccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHH
Q 018283          280 EWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLR  348 (358)
Q Consensus       280 ~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~  348 (358)
                                    ...   .+.  .+...           ....++.+||+++.+++++++.+.+.+-
T Consensus        58 --------------~~~---~~~--~~~~~-----------~~~~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          58 --------------VLE---KWK--SIKES-----------EGIPVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             --------------HHH---HHH--HHHHh-----------CCCcEEEEEccccccHHHHHHHHHHHHh
Confidence                          011   111  11110           1133577899999999999998877653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.74  E-value=0.00034  Score=61.15  Aligned_cols=25  Identities=8%  Similarity=0.041  Sum_probs=21.2

Q ss_pred             EEEEEeeccChhhHHHHHHHHHHHH
Q 018283          323 FKIYRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       323 ~~~~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                      ..+++||++++++++++++++....
T Consensus       176 ~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         176 APIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             CCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            4578899999999999999887654

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.73  E-value=0.001  Score=62.78  Aligned_cols=125  Identities=16%  Similarity=0.224  Sum_probs=72.4

Q ss_pred             CcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283          182 HKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       182 ~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      .....+.+.+.|.+|+.+.-+-...--.-.|..|.|+|+.-        .-.....+++-+=+.++       .-.++|.
T Consensus        65 pq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~k--------G~QtQtAEcLiig~~~c-------~klvvvi  129 (522)
T KOG0461|consen   65 PQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQK--------GKQTQTAECLIIGELLC-------KKLVVVI  129 (522)
T ss_pred             CccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhc--------ccccccchhhhhhhhhc-------cceEEEE
Confidence            35677899999999998764443333333466788999731        12223334443332222       2357778


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh----hhHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP----KLVK  337 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~----~ni~  337 (358)
                      ||+|+..|.-..                   ..+++..+-+++..+..-.        +....+..+||++|    +.|.
T Consensus       130 nkid~lpE~qr~-------------------ski~k~~kk~~KtLe~t~f--------~g~~PI~~vsa~~G~~~~~~i~  182 (522)
T KOG0461|consen  130 NKIDVLPENQRA-------------------SKIEKSAKKVRKTLESTGF--------DGNSPIVEVSAADGYFKEEMIQ  182 (522)
T ss_pred             eccccccchhhh-------------------hHHHHHHHHHHHHHHhcCc--------CCCCceeEEecCCCccchhHHH
Confidence            888886542111                   2234444444444433211        22355778999999    7777


Q ss_pred             HHHHHHHHHHH
Q 018283          338 KTFKLVDETLR  348 (358)
Q Consensus       338 ~vf~~i~~~i~  348 (358)
                      ++-+.+...|.
T Consensus       183 eL~e~l~s~if  193 (522)
T KOG0461|consen  183 ELKEALESRIF  193 (522)
T ss_pred             HHHHHHHHhhc
Confidence            77777777664

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=97.72  E-value=0.00046  Score=65.34  Aligned_cols=110  Identities=15%  Similarity=0.186  Sum_probs=71.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH--HHHHHHcCCCCCCCcEEEE
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE--LFDWVLKQPCFEKTSFMLF  260 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~--~~~~i~~~~~~~~~~iilv  260 (358)
                      ....-+|.+-||+|++.|-+-...=-..|+.+|+++|.           ...-++.+..  ..-+++     .=..++|.
T Consensus        82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA-----------R~Gvl~QTrRHs~I~sLL-----GIrhvvvA  145 (431)
T COG2895          82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA-----------RKGVLEQTRRHSFIASLL-----GIRHVVVA  145 (431)
T ss_pred             ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEec-----------chhhHHHhHHHHHHHHHh-----CCcEEEEE
Confidence            56778999999999999866655555678899999984           2233333322  122222     23578999


Q ss_pred             eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHH
Q 018283          261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK  338 (358)
Q Consensus       261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~  338 (358)
                      .||+||.+                |         -++.++-|...|..+...-.     -+...+.=.||..|.||..
T Consensus       146 VNKmDLvd----------------y---------~e~~F~~I~~dy~~fa~~L~-----~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         146 VNKMDLVD----------------Y---------SEEVFEAIVADYLAFAAQLG-----LKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             Eeeecccc----------------c---------CHHHHHHHHHHHHHHHHHcC-----CCcceEEechhccCCcccc
Confidence            99999953                2         13445666777776653211     2234555689999999853

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=97.72  E-value=0.00027  Score=66.24  Aligned_cols=39  Identities=18%  Similarity=0.327  Sum_probs=29.3

Q ss_pred             cccceEEEEEecCCC----chhh---hhHhhhhcCCcEEEEEEEcc
Q 018283          183 KKSGEVYRLFDVGGQ----RNER---RKWIHLFEGVSAVIFCAAIS  221 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq----~~~r---~~w~~y~~~~~~iIfv~dls  221 (358)
                      .+++..+++.|++|-    ..-|   +....--++||.||+|+|+.
T Consensus       106 ~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~  151 (365)
T COG1163         106 EYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVF  151 (365)
T ss_pred             eecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecC
Confidence            567899999999843    3333   33455678999999999986

>smart00053 DYNc Dynamin, GTPase

Probab=97.71  E-value=0.00025  Score=64.89  Aligned_cols=70  Identities=10%  Similarity=0.083  Sum_probs=43.0

Q ss_pred             cceEEEEEecCCCch-------------hhhhHhhhhcCC-cEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC
Q 018283          185 SGEVYRLFDVGGQRN-------------ERRKWIHLFEGV-SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP  250 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~-------------~r~~w~~y~~~~-~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~  250 (358)
                      .-..|.+.|++|-..             .+.+...|.++. +.+++|+|..         .+... .+.+++.+.+-.  
T Consensus       123 ~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~---------~d~~~-~d~l~ia~~ld~--  190 (240)
T smart00053      123 HVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPAN---------VDLAN-SDALKLAKEVDP--  190 (240)
T ss_pred             CCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECC---------CCCCc-hhHHHHHHHHHH--
Confidence            346789999999742             234566688854 5788888752         11111 122333333311  


Q ss_pred             CCCCCcEEEEeeCCCchh
Q 018283          251 CFEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       251 ~~~~~~iilv~NK~Dl~~  268 (358)
                        .+.++++|+||.|..+
T Consensus       191 --~~~rti~ViTK~D~~~  206 (240)
T smart00053      191 --QGERTIGVITKLDLMD  206 (240)
T ss_pred             --cCCcEEEEEECCCCCC
Confidence              3679999999999864

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.71  E-value=0.00036  Score=56.51  Aligned_cols=99  Identities=18%  Similarity=0.324  Sum_probs=63.0

Q ss_pred             EEecCCCchhhhhHhhh----hcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 018283          191 LFDVGGQRNERRKWIHL----FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI  266 (358)
Q Consensus       191 i~D~~Gq~~~r~~w~~y----~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl  266 (358)
                      ..||.|---..+.|-+-    ..+++.+++|-+..+         ...+       |-.-+..  ....|+|=+.+|.||
T Consensus        41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and---------~~s~-------f~p~f~~--~~~k~vIgvVTK~DL  102 (148)
T COG4917          41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAAND---------PESR-------FPPGFLD--IGVKKVIGVVTKADL  102 (148)
T ss_pred             ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccC---------cccc-------CCccccc--ccccceEEEEecccc
Confidence            35888877777777443    458899999987631         1111       1111111  123568889999999


Q ss_pred             hhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283          267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       267 ~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~  345 (358)
                      .+.                       .+++.+..|+.+-         +    .  =.+|++||.|..+++++++.+..
T Consensus       103 aed-----------------------~dI~~~~~~L~ea---------G----a--~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917         103 AED-----------------------ADISLVKRWLREA---------G----A--EPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             cch-----------------------HhHHHHHHHHHHc---------C----C--cceEEEeccCcccHHHHHHHHHh
Confidence            642                       3456666665432         1    1  24678999999999999998754

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=97.68  E-value=0.00016  Score=70.08  Aligned_cols=74  Identities=20%  Similarity=0.318  Sum_probs=55.7

Q ss_pred             eEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCC
Q 018283          173 EIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  252 (358)
Q Consensus       173 e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~  252 (358)
                      .+.|      ++.+..+++.||+|++.|..-.-.-+-.+|++|.|+|.+           ..-=..++++|+ +|.   +
T Consensus        73 VMqF------~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaA-----------KGiE~qT~KLfe-Vcr---l  131 (528)
T COG4108          73 VMQF------DYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAA-----------KGIEPQTLKLFE-VCR---L  131 (528)
T ss_pred             EEEe------ccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecc-----------cCccHHHHHHHH-HHh---h
Confidence            4677      888999999999999988766655567899999999963           111123456664 444   3


Q ss_pred             CCCcEEEEeeCCCch
Q 018283          253 EKTSFMLFLNKFDIF  267 (358)
Q Consensus       253 ~~~~iilv~NK~Dl~  267 (358)
                      .++||+-|.||.|..
T Consensus       132 R~iPI~TFiNKlDR~  146 (528)
T COG4108         132 RDIPIFTFINKLDRE  146 (528)
T ss_pred             cCCceEEEeeccccc
Confidence            589999999999964

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.55  E-value=0.00046  Score=72.06  Aligned_cols=72  Identities=14%  Similarity=0.091  Sum_probs=53.5

Q ss_pred             ccc-ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKS-GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~-~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      ..+ ...+++.||+||-.|-.--..-.+-+|++|.|+|..           ..-...+-..|+.....    ++|.++|.
T Consensus        71 ~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdav-----------eGV~~QTEtv~rqa~~~----~vp~i~fi  135 (697)
T COG0480          71 FWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAV-----------EGVEPQTETVWRQADKY----GVPRILFV  135 (697)
T ss_pred             EEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECC-----------CCeeecHHHHHHHHhhc----CCCeEEEE
Confidence            445 589999999999888777777788899999999863           12222334456665443    78999999


Q ss_pred             eCCCchhh
Q 018283          262 NKFDIFEK  269 (358)
Q Consensus       262 NK~Dl~~e  269 (358)
                      ||+|...+
T Consensus       136 NKmDR~~a  143 (697)
T COG0480         136 NKMDRLGA  143 (697)
T ss_pred             ECcccccc
Confidence            99997654

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.44  E-value=0.00031  Score=48.97  Aligned_cols=45  Identities=27%  Similarity=0.378  Sum_probs=31.1

Q ss_pred             CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283          211 VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD  265 (358)
Q Consensus       211 ~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D  265 (358)
                      .++|+|++|+|+        ..--++++-..+|+++..  .+.+.|+++|.||+|
T Consensus        14 ~~~ilfi~D~Se--------~CGysie~Q~~L~~~ik~--~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSE--------QCGYSIEEQLSLFKEIKP--LFPNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT---------TTSS-HHHHHHHHHHHHH--HTTTS-EEEEE--TT
T ss_pred             cceEEEEEcCCC--------CCCCCHHHHHHHHHHHHH--HcCCCCEEEEEeccC
Confidence            578999999984        344567888899999864  477899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK12289 GTPase RsgA; Reviewed

Probab=97.37  E-value=0.00085  Score=64.90  Aligned_cols=91  Identities=8%  Similarity=0.076  Sum_probs=55.3

Q ss_pred             HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCccccccc
Q 018283          204 WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFK  283 (358)
Q Consensus       204 w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~  283 (358)
                      ....+.++|.+++|+|+.+-+      .+...+..   ++..+ .   ..++|++||+||+||..+              
T Consensus        83 ~R~~~aNvD~vLlV~d~~~p~------~~~~~LdR---~L~~a-~---~~~ip~ILVlNK~DLv~~--------------  135 (352)
T PRK12289         83 DRPPVANADQILLVFALAEPP------LDPWQLSR---FLVKA-E---STGLEIVLCLNKADLVSP--------------  135 (352)
T ss_pred             echhhhcCCEEEEEEECCCCC------CCHHHHHH---HHHHH-H---HCCCCEEEEEEchhcCCh--------------
Confidence            344688999999999984210      01112222   22222 1   236899999999999532              


Q ss_pred             ccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283          284 DYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       284 ~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~  346 (358)
                                  ++...| ...|..            ..+.++.+||++++|++++++.+.+.
T Consensus       136 ------------~~~~~~-~~~~~~------------~g~~v~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        136 ------------TEQQQW-QDRLQQ------------WGYQPLFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             ------------HHHHHH-HHHHHh------------cCCeEEEEEcCCCCCHHHHhhhhccc
Confidence                        111112 222321            12457889999999999999988653

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=97.36  E-value=0.00037  Score=70.55  Aligned_cols=72  Identities=15%  Similarity=0.270  Sum_probs=55.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      .++..-+++.||.|+-.|-.-...-++-+|++++|+|..+           .-+...-.+++..+++    +.|++++.|
T Consensus       193 ~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~E-----------GVmlntEr~ikhaiq~----~~~i~vviN  257 (971)
T KOG0468|consen  193 KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAE-----------GVMLNTERIIKHAIQN----RLPIVVVIN  257 (971)
T ss_pred             cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEccc-----------CceeeHHHHHHHHHhc----cCcEEEEEe
Confidence            5678889999999999998888888899999999999741           2222334455555554    679999999


Q ss_pred             CCCchhh
Q 018283          263 KFDIFEK  269 (358)
Q Consensus       263 K~Dl~~e  269 (358)
                      |.|.+-.
T Consensus       258 KiDRLil  264 (971)
T KOG0468|consen  258 KVDRLIL  264 (971)
T ss_pred             hhHHHHH
Confidence            9998644

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=97.32  E-value=0.0023  Score=65.77  Aligned_cols=75  Identities=13%  Similarity=0.151  Sum_probs=43.9

Q ss_pred             ccceEEEEEecCCCchh------hhh----Hhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283          184 KSGEVYRLFDVGGQRNE------RRK----WIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  251 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~------r~~----w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~  251 (358)
                      ..+..+.++||+|-...      ...    ...++.  +++++|||..++.+..      +.+ -..+++.+..++....
T Consensus       163 idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~------D~e-D~~aLr~Iq~lFG~~I  235 (763)
T TIGR00993       163 VQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTR------DSN-DLPLLRTITDVLGPSI  235 (763)
T ss_pred             ECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccc------cHH-HHHHHHHHHHHhCHHh
Confidence            34578999999998632      111    122444  5899999998743211      001 1134555656555332


Q ss_pred             CCCCcEEEEeeCCCch
Q 018283          252 FEKTSFMLFLNKFDIF  267 (358)
Q Consensus       252 ~~~~~iilv~NK~Dl~  267 (358)
                      .  ..+||+++..|..
T Consensus       236 w--k~tIVVFThgD~l  249 (763)
T TIGR00993       236 W--FNAIVTLTHAASA  249 (763)
T ss_pred             H--cCEEEEEeCCccC
Confidence            2  2578888888875

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd01858 NGP_1 NGP-1

Probab=97.28  E-value=0.0007  Score=57.63  Aligned_cols=48  Identities=19%  Similarity=0.200  Sum_probs=29.2

Q ss_pred             hcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchh
Q 018283          208 FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       208 ~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~  268 (358)
                      ++++|.+++|+|.++..        ...-..    +...+.. ...+.|+++|+||+|+..
T Consensus         6 l~~aD~il~VvD~~~p~--------~~~~~~----i~~~l~~-~~~~~p~ilVlNKiDl~~   53 (157)
T cd01858           6 IDSSDVVIQVLDARDPM--------GTRCKH----VEEYLKK-EKPHKHLIFVLNKCDLVP   53 (157)
T ss_pred             hhhCCEEEEEEECCCCc--------cccCHH----HHHHHHh-ccCCCCEEEEEEchhcCC
Confidence            57899999999985311        111111    2222221 123579999999999953

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=97.25  E-value=0.0012  Score=62.03  Aligned_cols=21  Identities=19%  Similarity=0.447  Sum_probs=19.3

Q ss_pred             cccEEEecCCCCChhHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~   67 (358)
                      .++|+|+|.+|+|||||++-+
T Consensus         4 ~fnImVvG~sG~GKTTFIntL   24 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTL   24 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHH
Confidence            468999999999999999986

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.21  E-value=0.0053  Score=55.34  Aligned_cols=66  Identities=20%  Similarity=0.176  Sum_probs=43.7

Q ss_pred             cceEEEEEec-CCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          185 SGEVYRLFDV-GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       185 ~~~~l~i~D~-~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ....+.+.|| ||-+-|.+...   +++|.+|.|+|-           +..++.-+.+ .+.+.+.-  .=.+|.+|+||
T Consensus       132 ~~~e~VivDtEAGiEHfgRg~~---~~vD~vivVvDp-----------S~~sl~taer-i~~L~~el--g~k~i~~V~NK  194 (255)
T COG3640         132 NRYEVVIVDTEAGIEHFGRGTI---EGVDLVIVVVDP-----------SYKSLRTAER-IKELAEEL--GIKRIFVVLNK  194 (255)
T ss_pred             ccCcEEEEecccchhhhccccc---cCCCEEEEEeCC-----------cHHHHHHHHH-HHHHHHHh--CCceEEEEEee
Confidence            3456788998 78887766554   699999999985           3444433322 33333321  12689999999


Q ss_pred             CCch
Q 018283          264 FDIF  267 (358)
Q Consensus       264 ~Dl~  267 (358)
                      .|-.
T Consensus       195 v~e~  198 (255)
T COG3640         195 VDEE  198 (255)
T ss_pred             ccch
Confidence            9954

>PRK00098 GTPase RsgA; Reviewed

Probab=97.21  E-value=0.001  Score=62.99  Aligned_cols=87  Identities=13%  Similarity=0.162  Sum_probs=51.5

Q ss_pred             hcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCccccccccccc
Q 018283          208 FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQP  287 (358)
Q Consensus       208 ~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~  287 (358)
                      ..++|.+|+|+|+++-      +...+.+..+   +..+ ..   .++|+++|+||+||...+                 
T Consensus        78 aaniD~vllV~d~~~p------~~~~~~idr~---L~~~-~~---~~ip~iIVlNK~DL~~~~-----------------  127 (298)
T PRK00098         78 AANVDQAVLVFAAKEP------DFSTDLLDRF---LVLA-EA---NGIKPIIVLNKIDLLDDL-----------------  127 (298)
T ss_pred             eecCCEEEEEEECCCC------CCCHHHHHHH---HHHH-HH---CCCCEEEEEEhHHcCCCH-----------------
Confidence            4899999999998420      0111222222   2222 21   368999999999985221                 


Q ss_pred             CCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283          288 VSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       288 ~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~  345 (358)
                           ....+..+    .|..            ..+.++.+||++++|++++++.+..
T Consensus       128 -----~~~~~~~~----~~~~------------~g~~v~~vSA~~g~gi~~L~~~l~g  164 (298)
T PRK00098        128 -----EEARELLA----LYRA------------IGYDVLELSAKEGEGLDELKPLLAG  164 (298)
T ss_pred             -----HHHHHHHH----HHHH------------CCCeEEEEeCCCCccHHHHHhhccC
Confidence                 11111111    1211            1245788999999999999987653

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.20  E-value=0.0037  Score=53.32  Aligned_cols=65  Identities=18%  Similarity=0.227  Sum_probs=40.9

Q ss_pred             ceEEEEEecCCCch----hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283          186 GEVYRLFDVGGQRN----ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~----~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      ...+.+.|++|-..    ....|..|...++++|||++.+.        .-.+   .....+.......   ...+++|.
T Consensus       100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~--------~~~~---~~~~~l~~~~~~~---~~~~i~V~  165 (168)
T PF00350_consen  100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQ--------DLTE---SDMEFLKQMLDPD---KSRTIFVL  165 (168)
T ss_dssp             SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTS--------TGGG---HHHHHHHHHHTTT---CSSEEEEE
T ss_pred             ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCc--------ccch---HHHHHHHHHhcCC---CCeEEEEE
Confidence            34679999998843    34779999999999999998631        1111   1233344443321   33488889


Q ss_pred             eCC
Q 018283          262 NKF  264 (358)
Q Consensus       262 NK~  264 (358)
                      ||.
T Consensus       166 nk~  168 (168)
T PF00350_consen  166 NKA  168 (168)
T ss_dssp             E-G
T ss_pred             cCC
Confidence            984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.09  E-value=0.0066  Score=59.25  Aligned_cols=116  Identities=17%  Similarity=0.197  Sum_probs=70.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ...+..+.+.|+.|++.+-+--..-....+.+++|+|..        +.-....-|.+..++.+      .....++++|
T Consensus        46 ~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~d--------eGl~~qtgEhL~iLdll------gi~~giivlt  111 (447)
T COG3276          46 KLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAAD--------EGLMAQTGEHLLILDLL------GIKNGIIVLT  111 (447)
T ss_pred             cCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCc--------cCcchhhHHHHHHHHhc------CCCceEEEEe
Confidence            445558899999999987655555556889999999851        11223344444444333      3346799999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|..++..                       +++.++-|..... +           ....++-+||+.+++|.++=+.
T Consensus       112 k~D~~d~~r-----------------------~e~~i~~Il~~l~-l-----------~~~~i~~~s~~~g~GI~~Lk~~  156 (447)
T COG3276         112 KADRVDEAR-----------------------IEQKIKQILADLS-L-----------ANAKIFKTSAKTGRGIEELKNE  156 (447)
T ss_pred             ccccccHHH-----------------------HHHHHHHHHhhcc-c-----------ccccccccccccCCCHHHHHHH
Confidence            999975421                       1222222211111 0           1123466888888888888777


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      +.+..
T Consensus       157 l~~L~  161 (447)
T COG3276         157 LIDLL  161 (447)
T ss_pred             HHHhh
Confidence            77665

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.09  E-value=0.01  Score=55.36  Aligned_cols=33  Identities=21%  Similarity=0.383  Sum_probs=25.4

Q ss_pred             EEEEEeeccChhhHHHHHHHHHHHHHHhhhhhcCC
Q 018283          323 FKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGL  357 (358)
Q Consensus       323 ~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~~~~~l  357 (358)
                      -..+.|||..+++|.++++.|.+..  +.+++.|+
T Consensus       229 ppv~~t~A~~g~Gi~~L~~ai~~h~--~~~~~sg~  261 (323)
T COG1703         229 PPVVTTSALEGEGIDELWDAIEDHR--KFLTESGL  261 (323)
T ss_pred             CceeEeeeccCCCHHHHHHHHHHHH--HHHHhccc
Confidence            3467899999999999999998875  34555554

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.00  E-value=0.0021  Score=60.47  Aligned_cols=88  Identities=7%  Similarity=-0.002  Sum_probs=52.5

Q ss_pred             hhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCccccccccc
Q 018283          206 HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY  285 (358)
Q Consensus       206 ~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y  285 (358)
                      ..+.++|.+++|+|+.+        .. -++...-.++..+..    .++|+++|+||+||..+.               
T Consensus        74 ~i~anvD~vllV~d~~~--------p~-~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~---------------  125 (287)
T cd01854          74 VIAANVDQLVIVVSLNE--------PF-FNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE---------------  125 (287)
T ss_pred             eEEEeCCEEEEEEEcCC--------CC-CCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH---------------
Confidence            34789999999999842        11 022222223333222    368999999999985321               


Q ss_pred             ccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283          286 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       286 ~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~  345 (358)
                                 +...+ ...+..            ..+.++.+||+++.++++++..+..
T Consensus       126 -----------~~~~~-~~~~~~------------~g~~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         126 -----------EEELE-LVEALA------------LGYPVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             -----------HHHHH-HHHHHh------------CCCeEEEEECCCCccHHHHHhhhcc
Confidence                       00011 111111            1245678999999999999887764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK13796 GTPase YqeH; Provisional

Probab=97.00  E-value=0.0041  Score=60.63  Aligned_cols=99  Identities=11%  Similarity=0.130  Sum_probs=58.4

Q ss_pred             hhhhhHhhhhcCCc-EEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCc
Q 018283          199 NERRKWIHLFEGVS-AVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLN  277 (358)
Q Consensus       199 ~~r~~w~~y~~~~~-~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~  277 (358)
                      .|++.-.. ....+ .|++|+|+.++.         .++   ...+..+..     +.|+++|+||+||....       
T Consensus        58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~---------~s~---~~~L~~~~~-----~kpviLViNK~DLl~~~-------  112 (365)
T PRK13796         58 DFLKLLNG-IGDSDALVVNVVDIFDFN---------GSW---IPGLHRFVG-----NNPVLLVGNKADLLPKS-------  112 (365)
T ss_pred             HHHHHHHh-hcccCcEEEEEEECccCC---------Cch---hHHHHHHhC-----CCCEEEEEEchhhCCCc-------
Confidence            34443333 34444 889999986543         111   223333322     56899999999995321       


Q ss_pred             ccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283          278 VCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       278 ~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~  346 (358)
                                     ...++..+|+...+....         -....++.+||+++.|++++++.+.+.
T Consensus       113 ---------------~~~~~i~~~l~~~~k~~g---------~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        113 ---------------VKKNKVKNWLRQEAKELG---------LRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             ---------------cCHHHHHHHHHHHHHhcC---------CCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence                           123344556554443210         011246789999999999999998654

>PRK12288 GTPase RsgA; Reviewed

Probab=96.97  E-value=0.0052  Score=59.37  Aligned_cols=87  Identities=8%  Similarity=0.098  Sum_probs=51.9

Q ss_pred             cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccC
Q 018283          209 EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPV  288 (358)
Q Consensus       209 ~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~  288 (358)
                      .|+|.+++|+++.       .+.+...+..++.   .+ .   ..++|++||+||+||..+.                  
T Consensus       119 ANvD~vlIV~s~~-------p~~s~~~Ldr~L~---~a-~---~~~i~~VIVlNK~DL~~~~------------------  166 (347)
T PRK12288        119 ANIDQIVIVSAVL-------PELSLNIIDRYLV---AC-E---TLGIEPLIVLNKIDLLDDE------------------  166 (347)
T ss_pred             EEccEEEEEEeCC-------CCCCHHHHHHHHH---HH-H---hcCCCEEEEEECccCCCcH------------------
Confidence            4689999999863       1122333333332   22 1   2368999999999995321                  


Q ss_pred             CCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283          289 STGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       289 ~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~  345 (358)
                           ......+++ ..|..            ..+.++.+||+++++++++++.+..
T Consensus       167 -----~~~~~~~~~-~~y~~------------~g~~v~~vSA~tg~GideL~~~L~~  205 (347)
T PRK12288        167 -----GRAFVNEQL-DIYRN------------IGYRVLMVSSHTGEGLEELEAALTG  205 (347)
T ss_pred             -----HHHHHHHHH-HHHHh------------CCCeEEEEeCCCCcCHHHHHHHHhh
Confidence                 001111111 12221            1256788999999999999998865

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.97  E-value=0.0048  Score=57.90  Aligned_cols=113  Identities=14%  Similarity=0.209  Sum_probs=72.2

Q ss_pred             EEEEEecCCCchhhhhHhhhhcCC---cEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283          188 VYRLFDVGGQRNERRKWIHLFEGV---SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  264 (358)
Q Consensus       188 ~l~i~D~~Gq~~~r~~w~~y~~~~---~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~  264 (358)
                      .+.+.|..|++-.-   ...+.++   |++|+|++-.+       ........+.+..++-+ .     -..++++-||.
T Consensus        87 ~VSfVDaPGHe~LM---ATMLsGAAlMDgAlLvIaANE-------pcPQPQT~EHl~AleIi-g-----ik~iiIvQNKI  150 (415)
T COG5257          87 RVSFVDAPGHETLM---ATMLSGAALMDGALLVIAANE-------PCPQPQTREHLMALEII-G-----IKNIIIVQNKI  150 (415)
T ss_pred             EEEEeeCCchHHHH---HHHhcchhhhcceEEEEecCC-------CCCCCchHHHHHHHhhh-c-----cceEEEEeccc
Confidence            46789999998643   3345554   78999998642       23334445555544333 2     24689999999


Q ss_pred             CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283          265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD  344 (358)
Q Consensus       265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~  344 (358)
                      ||..+.-..                   +.+++-.+|++...-             ....+.=+||.-+.||+-+++.|.
T Consensus       151 DlV~~E~Al-------------------E~y~qIk~FvkGt~A-------------e~aPIIPiSA~~~~NIDal~e~i~  198 (415)
T COG5257         151 DLVSRERAL-------------------ENYEQIKEFVKGTVA-------------ENAPIIPISAQHKANIDALIEAIE  198 (415)
T ss_pred             ceecHHHHH-------------------HHHHHHHHHhccccc-------------CCCceeeehhhhccCHHHHHHHHH
Confidence            997542110                   334555555544331             112345589999999999999999


Q ss_pred             HHHH
Q 018283          345 ETLR  348 (358)
Q Consensus       345 ~~i~  348 (358)
                      +.|-
T Consensus       199 ~~Ip  202 (415)
T COG5257         199 KYIP  202 (415)
T ss_pred             HhCC
Confidence            8873

>PTZ00258 GTP-binding protein; Provisional

Probab=96.97  E-value=0.0033  Score=61.50  Aligned_cols=24  Identities=29%  Similarity=0.378  Sum_probs=21.4

Q ss_pred             hccccEEEecCCCCChhHHHHHHH
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ...+||.|+|.+++|||||++.+.
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt   42 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALC   42 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHh
Confidence            567799999999999999999873

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=96.87  E-value=0.0021  Score=71.60  Aligned_cols=76  Identities=12%  Similarity=0.283  Sum_probs=44.2

Q ss_pred             EEEEecCCCc--------hhhhhHhhhhc---------CCcEEEEEEEccccccccccccccchHHH-HHHHHHHHHcCC
Q 018283          189 YRLFDVGGQR--------NERRKWIHLFE---------GVSAVIFCAAISEYDQTLFEDEQKNRMME-TKELFDWVLKQP  250 (358)
Q Consensus       189 l~i~D~~Gq~--------~~r~~w~~y~~---------~~~~iIfv~dls~~d~~~~~~~~~~~l~~-~~~~~~~i~~~~  250 (358)
                      -.++||+|..        ..+..|..+..         -.++||+++|+++.-..  +......... ...-+.++.. .
T Consensus       163 avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~--~~~~~~~~a~~lR~rl~el~~-~  239 (1169)
T TIGR03348       163 AVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTA--DPAERKAHARAIRQRLQELRE-Q  239 (1169)
T ss_pred             EEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCC--CHHHHHHHHHHHHHHHHHHHH-H
Confidence            3588999942        23556877653         48999999999754211  0111111111 1222233322 2


Q ss_pred             CCCCCcEEEEeeCCCch
Q 018283          251 CFEKTSFMLFLNKFDIF  267 (358)
Q Consensus       251 ~~~~~~iilv~NK~Dl~  267 (358)
                      .....||.|+++|+|+.
T Consensus       240 lg~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       240 LGARFPVYLVLTKADLL  256 (1169)
T ss_pred             hCCCCCEEEEEecchhh
Confidence            23478999999999986

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.82  E-value=0.0044  Score=62.01  Aligned_cols=27  Identities=33%  Similarity=0.565  Sum_probs=22.6

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhcC
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      +.-||.++|++|||||||++.+-..|.
T Consensus       377 kGekVaIvG~nGsGKSTilr~LlrF~d  403 (591)
T KOG0057|consen  377 KGEKVAIVGSNGSGKSTILRLLLRFFD  403 (591)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            345899999999999999998865554

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=96.82  E-value=0.032  Score=54.72  Aligned_cols=27  Identities=22%  Similarity=0.262  Sum_probs=23.8

Q ss_pred             HHhhccccEEEecCCCCChhHHHHHHH
Q 018283           42 KAEKHIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        42 ~~~~~~~killlG~~~sGKSTi~kq~~   68 (358)
                      +|....+-|.++|+-.+|||||+|++.
T Consensus        12 ~RT~G~IyIGvvGpvrtGKSTfIn~fm   38 (492)
T TIGR02836        12 ERTQGDIYIGVVGPVRTGKSTFIKKFM   38 (492)
T ss_pred             HHhCCcEEEEEEcCCCCChHHHHHHHH
Confidence            455678999999999999999999974

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.75  E-value=0.0074  Score=55.35  Aligned_cols=26  Identities=19%  Similarity=0.305  Sum_probs=21.0

Q ss_pred             eEEEEEeeccChhhHHHHHHHHHHHH
Q 018283          322 VFKIYRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       322 ~~~~~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                      ...+..|||+.+++|.++++.|.+.-
T Consensus       204 ~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  204 RPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             --EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34678899999999999999988753

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=96.72  E-value=0.011  Score=57.28  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=19.3

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      ++|.|+|.+++|||||++.+.
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt   23 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALT   23 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHh
Confidence            689999999999999999874

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=96.71  E-value=0.042  Score=51.16  Aligned_cols=84  Identities=18%  Similarity=0.241  Sum_probs=51.1

Q ss_pred             eeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH
Q 018283          165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD  244 (358)
Q Consensus       165 ~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~  244 (358)
                      |.-|.....+.+      +..+..+...|+.|+..|-+-...---..|+.|+|++.++        .......+.+-+- 
T Consensus        59 rGITIntahvey------et~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~d--------GpmPqTrEHiLla-  123 (394)
T COG0050          59 RGITINTAHVEY------ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD--------GPMPQTREHILLA-  123 (394)
T ss_pred             cCceeccceeEE------ecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCC--------CCCCcchhhhhhh-
Confidence            344444445555      5666778889999998875554444446789999998752        2223222222111 


Q ss_pred             HHHcCCCCCCCcEEEEeeCCCchh
Q 018283          245 WVLKQPCFEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       245 ~i~~~~~~~~~~iilv~NK~Dl~~  268 (358)
                           ....-.-+++|+||+|+.+
T Consensus       124 -----rqvGvp~ivvflnK~Dmvd  142 (394)
T COG0050         124 -----RQVGVPYIVVFLNKVDMVD  142 (394)
T ss_pred             -----hhcCCcEEEEEEecccccC
Confidence                 1112236788999999975

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.70  E-value=0.001  Score=63.31  Aligned_cols=70  Identities=14%  Similarity=0.248  Sum_probs=45.4

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ..--+++.|.+|+.+|.+-..+-+.  ..+++.+|++..        ..-.....+.+-+...+       ++|++++.+
T Consensus       247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~--------~Gi~~tTrEHLgl~~AL-------~iPfFvlvt  311 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSAD--------RGITWTTREHLGLIAAL-------NIPFFVLVT  311 (591)
T ss_pred             hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcC--------CCCccccHHHHHHHHHh-------CCCeEEEEE
Confidence            3345688999999999877766444  356777787641        11112233444433332       689999999


Q ss_pred             CCCchhh
Q 018283          263 KFDIFEK  269 (358)
Q Consensus       263 K~Dl~~e  269 (358)
                      |+||...
T Consensus       312 K~Dl~~~  318 (591)
T KOG1143|consen  312 KMDLVDR  318 (591)
T ss_pred             eeccccc
Confidence            9999754

>cd01900 YchF YchF subfamily

Probab=96.61  E-value=0.013  Score=54.81  Aligned_cols=35  Identities=14%  Similarity=0.237  Sum_probs=24.0

Q ss_pred             eEEEEEecCCCch----hhh---hHhhhhcCCcEEEEEEEcc
Q 018283          187 EVYRLFDVGGQRN----ERR---KWIHLFEGVSAVIFCAAIS  221 (358)
Q Consensus       187 ~~l~i~D~~Gq~~----~r~---~w~~y~~~~~~iIfv~dls  221 (358)
                      ..+.+.|++|-..    -..   ......+.+|++++|+|.+
T Consensus        62 ~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          62 ATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             eEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence            3589999999532    122   2333456899999999975

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd01856 YlqF YlqF

Probab=96.59  E-value=0.0069  Score=52.30  Aligned_cols=90  Identities=23%  Similarity=0.188  Sum_probs=52.9

Q ss_pred             hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCccccc
Q 018283          202 RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEW  281 (358)
Q Consensus       202 ~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~  281 (358)
                      ..-.....++|.+++|+|.++..      ...+     ......      ..+.|+++++||+|+..+.           
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~------~~~~-----~~i~~~------~~~k~~ilVlNK~Dl~~~~-----------   62 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPL------SSRN-----PLLEKI------LGNKPRIIVLNKADLADPK-----------   62 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCcc------CcCC-----hhhHhH------hcCCCEEEEEehhhcCChH-----------
Confidence            33445678999999999985311      0111     111111      1246899999999985221           


Q ss_pred             ccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHH
Q 018283          282 FKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       282 f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                                  ...+..++    +..            ....++.+||+++.+++++.+.+.+.+
T Consensus        63 ------------~~~~~~~~----~~~------------~~~~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          63 ------------KTKKWLKY----FES------------KGEKVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             ------------HHHHHHHH----HHh------------cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence                        01111111    111            012356789999999999998887765

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01859 MJ1464 MJ1464

Probab=96.49  E-value=0.011  Score=49.99  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.4

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ...+++++|.+++||||+++++.
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~  122 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALK  122 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            45789999999999999999874

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK08118 topology modulation protein; Reviewed

Probab=96.46  E-value=0.0024  Score=55.14  Aligned_cols=23  Identities=43%  Similarity=0.732  Sum_probs=20.2

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ||+|+|++||||||+.+++...+
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l   25 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKL   25 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            79999999999999999985433

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.45  E-value=0.0026  Score=51.23  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.2

Q ss_pred             cEEEecCCCCChhHHHHHHHHh
Q 018283           49 KLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l   70 (358)
                      +|+|.|++||||||+++++.-.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998643

...

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=96.41  E-value=0.0093  Score=49.74  Aligned_cols=49  Identities=18%  Similarity=0.154  Sum_probs=29.7

Q ss_pred             hhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchh
Q 018283          207 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       207 y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~  268 (358)
                      ..+++|.+++|+|..+        .....-.+..+++...     ..++|+++++||+|+..
T Consensus         8 ~i~~aD~vl~ViD~~~--------p~~~~~~~l~~~l~~~-----~~~k~~iivlNK~DL~~   56 (141)
T cd01857           8 VVERSDIVVQIVDARN--------PLLFRPPDLERYVKEV-----DPRKKNILLLNKADLLT   56 (141)
T ss_pred             HHhhCCEEEEEEEccC--------CcccCCHHHHHHHHhc-----cCCCcEEEEEechhcCC
Confidence            4578999999999742        1111111222222221     14689999999999853

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK07261 topology modulation protein; Provisional

Probab=96.39  E-value=0.0029  Score=54.86  Aligned_cols=23  Identities=30%  Similarity=0.496  Sum_probs=19.9

Q ss_pred             ccEEEecCCCCChhHHHHHHHHh
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l   70 (358)
                      .||+++|++||||||+.+++...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999998533

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.38  E-value=0.0024  Score=55.76  Aligned_cols=21  Identities=38%  Similarity=0.683  Sum_probs=19.3

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      +||+++|++||||||+.+++.
T Consensus         1 ~riiilG~pGaGK~T~A~~La   21 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLA   21 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999985

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.34  E-value=0.014  Score=56.85  Aligned_cols=74  Identities=16%  Similarity=0.147  Sum_probs=43.2

Q ss_pred             cceEEEEEecCCCchhhhhH---hhhhcC---CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC-cE
Q 018283          185 SGEVYRLFDVGGQRNERRKW---IHLFEG---VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT-SF  257 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w---~~y~~~---~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~-~i  257 (358)
                      .+..+.++||+|........   ...+..   ..-.++|++.+         ...+.+.+....|......|...-. +-
T Consensus       214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAt---------s~~~~l~evi~~f~~~~~~p~~~~~~~~  284 (374)
T PRK14722        214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNAT---------SHGDTLNEVVQAYRSAAGQPKAALPDLA  284 (374)
T ss_pred             cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCc---------cChHHHHHHHHHHHHhhcccccccCCCC
Confidence            34577889999976443322   222322   33457888863         4556667777778776543322111 22


Q ss_pred             EEEeeCCCch
Q 018283          258 MLFLNKFDIF  267 (358)
Q Consensus       258 ilv~NK~Dl~  267 (358)
                      =++++|.|-.
T Consensus       285 ~~I~TKlDEt  294 (374)
T PRK14722        285 GCILTKLDEA  294 (374)
T ss_pred             EEEEeccccC
Confidence            4677999964

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=96.33  E-value=0.036  Score=48.21  Aligned_cols=19  Identities=26%  Similarity=0.504  Sum_probs=16.8

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      +++-|.-||||||+++++-
T Consensus         3 ~ii~GfLGsGKTTli~~ll   21 (178)
T PF02492_consen    3 IIITGFLGSGKTTLINHLL   21 (178)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            5788999999999999974

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=96.31  E-value=0.036  Score=46.94  Aligned_cols=24  Identities=8%  Similarity=0.077  Sum_probs=19.8

Q ss_pred             EEEEeeccChhhHHHHHHHHHHHH
Q 018283          324 KIYRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       324 ~~~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                      .++.+||+++.+++.+.+.+.+..
T Consensus        61 ~ii~vSa~~~~gi~~L~~~i~~~~   84 (155)
T cd01849          61 IPFKISATNGQGIEKKESAFTKQT   84 (155)
T ss_pred             eEEEEeccCCcChhhHHHHHHHHh
Confidence            456799999999999999887654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.21  E-value=0.017  Score=56.50  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=19.0

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      ..+|+|+|++||||||++..+.
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA  262 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMA  262 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHH
Confidence            3578999999999999988773

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.05  E-value=0.0059  Score=52.44  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=21.9

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhcC
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .-.+++.|++|||||||+|++..+-.
T Consensus        29 Ge~iaitGPSG~GKStllk~va~Lis   54 (223)
T COG4619          29 GEFIAITGPSGCGKSTLLKIVASLIS   54 (223)
T ss_pred             CceEEEeCCCCccHHHHHHHHHhccC
Confidence            33689999999999999999976654

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.04  E-value=0.063  Score=50.12  Aligned_cols=66  Identities=14%  Similarity=0.226  Sum_probs=38.2

Q ss_pred             cceEEEEEecCCCchhhhhHh-------hhh-----cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCC
Q 018283          185 SGEVYRLFDVGGQRNERRKWI-------HLF-----EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  252 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~-------~y~-----~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~  252 (358)
                      .+..+.+.||+|.......+.       ...     ..++.+++|+|.+         ...+.+..+ ..|...++    
T Consensus       153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~---------~~~~~~~~~-~~f~~~~~----  218 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT---------TGQNALEQA-KVFNEAVG----  218 (272)
T ss_pred             CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC---------CCHHHHHHH-HHHHhhCC----
Confidence            456789999999864322221       111     1378899999973         333444433 22322211    


Q ss_pred             CCCcEEEEeeCCCch
Q 018283          253 EKTSFMLFLNKFDIF  267 (358)
Q Consensus       253 ~~~~iilv~NK~Dl~  267 (358)
                         +--+++||.|..
T Consensus       219 ---~~g~IlTKlDe~  230 (272)
T TIGR00064       219 ---LTGIILTKLDGT  230 (272)
T ss_pred             ---CCEEEEEccCCC
Confidence               346889999963

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.00  E-value=0.056  Score=51.64  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=19.1

Q ss_pred             cccEEEecCCCCChhHHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~   69 (358)
                      ..-++++|++||||||++..+..
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~  136 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAH  136 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34678999999999999988743

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=95.99  E-value=0.052  Score=48.13  Aligned_cols=67  Identities=19%  Similarity=0.187  Sum_probs=37.1

Q ss_pred             ccceEEEEEecCCCchhh----hhHhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcE
Q 018283          184 KSGEVYRLFDVGGQRNER----RKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF  257 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r----~~w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~i  257 (358)
                      .++..+.+.||+|.....    ..+..+.+  ..+-+++|+|.+         ...+.+..... |...++       +=
T Consensus        81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~---------~~~~~~~~~~~-~~~~~~-------~~  143 (196)
T PF00448_consen   81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSAT---------MGQEDLEQALA-FYEAFG-------ID  143 (196)
T ss_dssp             HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGG---------GGGHHHHHHHH-HHHHSS-------TC
T ss_pred             hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecc---------cChHHHHHHHH-Hhhccc-------Cc
Confidence            345778999999975432    22333332  567788999874         33344443333 333221       11


Q ss_pred             EEEeeCCCch
Q 018283          258 MLFLNKFDIF  267 (358)
Q Consensus       258 ilv~NK~Dl~  267 (358)
                      -++++|.|-.
T Consensus       144 ~lIlTKlDet  153 (196)
T PF00448_consen  144 GLILTKLDET  153 (196)
T ss_dssp             EEEEESTTSS
T ss_pred             eEEEEeecCC
Confidence            4668999963

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK06217 hypothetical protein; Validated

Probab=95.98  E-value=0.0059  Score=53.35  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=20.6

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+|+|+|.+||||||+.+++...+
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l   25 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERL   25 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            379999999999999999986443

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=95.95  E-value=0.044  Score=55.35  Aligned_cols=48  Identities=13%  Similarity=0.104  Sum_probs=32.8

Q ss_pred             cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhh
Q 018283          209 EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEK  269 (358)
Q Consensus       209 ~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~e  269 (358)
                      ..||.+.++||+|          +.+++......++.-.   .....|+++++.|.|+.+.
T Consensus       494 ~~cDv~~~~YDsS----------~p~sf~~~a~v~~~~~---~~~~~Pc~~va~K~dlDe~  541 (625)
T KOG1707|consen  494 AACDVACLVYDSS----------NPRSFEYLAEVYNKYF---DLYKIPCLMVATKADLDEV  541 (625)
T ss_pred             ceeeeEEEecccC----------CchHHHHHHHHHHHhh---hccCCceEEEeeccccchh
Confidence            5789999999985          3344444444443322   2257899999999999754

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.95  E-value=0.0051  Score=54.83  Aligned_cols=25  Identities=28%  Similarity=0.432  Sum_probs=20.8

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .-.++++|++|||||||++-+..|-
T Consensus        28 Gevv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          28 GEVVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCc
Confidence            3378999999999999999886544

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=95.92  E-value=0.0059  Score=50.56  Aligned_cols=19  Identities=42%  Similarity=0.648  Sum_probs=17.6

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      |+|.|++||||||+++++.
T Consensus         2 ii~~G~pgsGKSt~a~~l~   20 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLA   20 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6899999999999999985

...

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=95.91  E-value=0.096  Score=50.24  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.6

Q ss_pred             hccccEEEecCCCCChhHHHHHH
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~   67 (358)
                      .-.+.|+++|++|+|||||++.+
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL   43 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTL   43 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhh
Confidence            45678999999999999999987

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=95.90  E-value=0.0096  Score=42.46  Aligned_cols=23  Identities=35%  Similarity=0.563  Sum_probs=19.6

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -.++.|+.|||||||+..+..+.
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999986444

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=95.75  E-value=0.12  Score=44.39  Aligned_cols=20  Identities=30%  Similarity=0.466  Sum_probs=16.9

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -+++.|.+|+||||+...+.
T Consensus         2 ~~~~~G~~G~GKTt~~~~la   21 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLA   21 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            36889999999999987763

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=95.73  E-value=0.049  Score=50.94  Aligned_cols=91  Identities=21%  Similarity=0.164  Sum_probs=53.9

Q ss_pred             hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccc
Q 018283          203 KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWF  282 (358)
Q Consensus       203 ~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f  282 (358)
                      .-....+++|.+|+|+|..+-.      ...+      ..+...+     .+.|+++|+||+|+..+.            
T Consensus        14 ~~~~~l~~aDvVl~V~Dar~p~------~~~~------~~i~~~l-----~~kp~IiVlNK~DL~~~~------------   64 (276)
T TIGR03596        14 EIKEKLKLVDVVIEVLDARIPL------SSRN------PMIDEIR-----GNKPRLIVLNKADLADPA------------   64 (276)
T ss_pred             HHHHHHhhCCEEEEEEeCCCCC------CCCC------hhHHHHH-----CCCCEEEEEEccccCCHH------------
Confidence            3345678999999999974210      1111      1122222     257999999999984321            


Q ss_pred             cccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHH
Q 018283          283 KDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       283 ~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~  349 (358)
                                 ......+++    ...            ...++.+||+++.+++.+.+.+.+.+-.
T Consensus        65 -----------~~~~~~~~~----~~~------------~~~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        65 -----------VTKQWLKYF----EEK------------GIKALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             -----------HHHHHHHHH----HHc------------CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence                       011112221    110            1235678999999999998888776643

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=95.61  E-value=0.0083  Score=52.57  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=19.7

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .++|+|++||||||+++.+....
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58899999999999999985443

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=95.61  E-value=0.011  Score=49.26  Aligned_cols=24  Identities=33%  Similarity=0.544  Sum_probs=19.9

Q ss_pred             EEEecCCCCChhHHHHHHHHhcCC
Q 018283           50 LLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      |+|+|++||||||+++++...+..
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~~   25 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFDP   25 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCCc
Confidence            688999999999999998655433

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG1162 Predicted GTPases [General function prediction only]

Probab=95.59  E-value=0.058  Score=50.65  Aligned_cols=19  Identities=37%  Similarity=0.581  Sum_probs=17.2

Q ss_pred             cEEEecCCCCChhHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~   67 (358)
                      -.+++|.+|+|||||++.+
T Consensus       166 ~svl~GqSGVGKSSLiN~L  184 (301)
T COG1162         166 ITVLLGQSGVGKSTLINAL  184 (301)
T ss_pred             eEEEECCCCCcHHHHHHhh
Confidence            4678899999999999987

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=95.56  E-value=0.0088  Score=57.81  Aligned_cols=84  Identities=19%  Similarity=0.165  Sum_probs=61.7

Q ss_pred             eeeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHH
Q 018283          164 ARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF  243 (358)
Q Consensus       164 ~~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~  243 (358)
                      -|+-|++-..+.|      +.++.++++.||.|+-.||---..|.+--|+++-|+|-|.         ..+  ...+..|
T Consensus        85 ergitiqsaav~f------dwkg~rinlidtpghvdf~leverclrvldgavav~dasa---------gve--~qtltvw  147 (753)
T KOG0464|consen   85 ERGITIQSAAVNF------DWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASA---------GVE--AQTLTVW  147 (753)
T ss_pred             hcCceeeeeeeec------ccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccC---------Ccc--cceeeee
Confidence            3455555556778      8999999999999999999999999999999999999752         111  1223344


Q ss_pred             HHHHcCCCCCCCcEEEEeeCCCchh
Q 018283          244 DWVLKQPCFEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       244 ~~i~~~~~~~~~~iilv~NK~Dl~~  268 (358)
                      ++.-.    -+.|-+.|.||+|...
T Consensus       148 rqadk----~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  148 RQADK----FKIPAHCFINKMDKLA  168 (753)
T ss_pred             hhccc----cCCchhhhhhhhhhhh
Confidence            43322    2678889999999754

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=95.53  E-value=0.098  Score=51.88  Aligned_cols=66  Identities=12%  Similarity=0.089  Sum_probs=38.3

Q ss_pred             cceEEEEEecCCCchhhhhHhh----hh--cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 018283          185 SGEVYRLFDVGGQRNERRKWIH----LF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM  258 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~----y~--~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ii  258 (358)
                      .++.+.|.||+|.......+..    +.  .+.+-+++|+|.+         ...+. .+..+.|...+       .+--
T Consensus       181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~---------~Gq~a-~~~a~~F~~~~-------~~~g  243 (429)
T TIGR01425       181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGS---------IGQAA-EAQAKAFKDSV-------DVGS  243 (429)
T ss_pred             CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccc---------cChhH-HHHHHHHHhcc-------CCcE
Confidence            3578899999997654333322    21  2467789999853         12222 22334444321       2446


Q ss_pred             EEeeCCCch
Q 018283          259 LFLNKFDIF  267 (358)
Q Consensus       259 lv~NK~Dl~  267 (358)
                      +++||.|-.
T Consensus       244 ~IlTKlD~~  252 (429)
T TIGR01425       244 VIITKLDGH  252 (429)
T ss_pred             EEEECccCC
Confidence            789999964

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.52  E-value=0.019  Score=64.08  Aligned_cols=151  Identities=15%  Similarity=0.186  Sum_probs=90.3

Q ss_pred             hccccEEEecCCCCChhHHHHHHH----HhcC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIK----LLFQ-------TGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSM  113 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~----~l~~-------~~f~~~e~~~~~~~I~~n~~~~~~~l~~~~~~l~~~~~~~~  113 (358)
                      ++...+.++|+-|||||||+..+-    .+.+       -.|-+++.+.+..+|+.|++                     
T Consensus       545 ~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNIL---------------------  603 (1381)
T KOG0054|consen  545 KKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENIL---------------------  603 (1381)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhh---------------------
Confidence            456689999999999999998762    1111       12677888888888888886                     


Q ss_pred             ccccCcchHHHHHHH-hhccCCCCCccCcHHHHHHHHHhhcCCCCCcceeeeeeccCceeeEeeccCCCCcccceEEEEE
Q 018283          114 KFVVSSENKEIGEKL-SEIGGRLDYPRLTKELAEDIETLWADPAIQDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLF  192 (358)
Q Consensus       114 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~lw~d~~i~~Dil~~~~~T~gi~e~~~~~~~~~~~~~~~l~i~  192 (358)
                        +.+|-+++..+.+ ..|.-..|..                      +|    |--..  +.+      ..+++++   
T Consensus       604 --FG~~~d~~rY~~Vi~aC~L~~Dle----------------------~L----p~GD~--TeI------GErGinL---  644 (1381)
T KOG0054|consen  604 --FGSPYDEERYDKVIKACALKKDLE----------------------IL----PFGDL--TEI------GERGINL---  644 (1381)
T ss_pred             --cCccccHHHHHHHHHHccCHhHHh----------------------hc----CCCCc--cee------cCCccCC---
Confidence              2234344333322 2222211100                      00    00000  111      3455655   


Q ss_pred             ecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchh
Q 018283          193 DVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       193 D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~  268 (358)
                       .|||+.--.+-+.-|+++|..++  |         |.=+.-.-+-...+|++.+ ...+.++.+|||-|....+.
T Consensus       645 -SGGQKqRIsLARAVY~~adIYLL--D---------DplSAVDahvg~~if~~ci-~~~L~~KT~ILVTHql~~L~  707 (1381)
T KOG0054|consen  645 -SGGQKQRISLARAVYQDADIYLL--D---------DPLSAVDAHVGKHIFEECI-RGLLRGKTVILVTHQLQFLP  707 (1381)
T ss_pred             -cHhHHHHHHHHHHHhccCCEEEE--c---------CcchhhhHhhhHHHHHHHH-HhhhcCCEEEEEeCchhhhh
Confidence             69999888889999999997554  3         1111122344567788877 44566788888888766543

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.42  E-value=0.012  Score=53.63  Aligned_cols=24  Identities=33%  Similarity=0.444  Sum_probs=20.1

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      =|.+||++||||||+++-+.-+..
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999998865543

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.41  E-value=0.16  Score=50.18  Aligned_cols=20  Identities=25%  Similarity=0.494  Sum_probs=17.9

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -++++|++||||||++.++.
T Consensus       225 vi~lvGptGvGKTTtaaKLA  244 (432)
T PRK12724        225 VVFFVGPTGSGKTTSIAKLA  244 (432)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48899999999999998884

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=95.39  E-value=0.014  Score=50.55  Aligned_cols=22  Identities=18%  Similarity=0.407  Sum_probs=19.0

Q ss_pred             cEEEecCCCCChhHHHHHHHHh
Q 018283           49 KLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l   70 (358)
                      -++|+|++||||||+++++...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998543

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=95.38  E-value=0.039  Score=53.13  Aligned_cols=37  Identities=16%  Similarity=0.199  Sum_probs=27.8

Q ss_pred             ceEEEEEecCCCc-------hhhhhHhhhhcCCcEEEEEEEccc
Q 018283          186 GEVYRLFDVGGQR-------NERRKWIHLFEGVSAVIFCAAISE  222 (358)
Q Consensus       186 ~~~l~i~D~~Gq~-------~~r~~w~~y~~~~~~iIfv~dls~  222 (358)
                      ...+.+.|++|--       ..-.+...-.|.+|+|+-||+.++
T Consensus        66 ~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          66 PAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             eeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence            4578999998763       234455666789999999999874

>TIGR00092 GTP-binding protein YchF

Probab=95.35  E-value=0.1  Score=50.71  Aligned_cols=36  Identities=11%  Similarity=0.158  Sum_probs=26.6

Q ss_pred             eEEEEEecCCCch-------hhhhHhhhhcCCcEEEEEEEccc
Q 018283          187 EVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISE  222 (358)
Q Consensus       187 ~~l~i~D~~Gq~~-------~r~~w~~y~~~~~~iIfv~dls~  222 (358)
                      ..+.+.|++|-..       .........+++|+++.|++..+
T Consensus        67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence            4568889988643       23355667889999999999854

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.34  E-value=0.013  Score=52.17  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=19.2

Q ss_pred             EEEecCCCCChhHHHHHHHHhcC
Q 018283           50 LLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ..++|++|||||||++-+..+..
T Consensus        36 TAlIGPSGcGKST~LR~lNRmnd   58 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLNRMND   58 (253)
T ss_pred             EEEECCCCcCHHHHHHHHHhhcc
Confidence            57899999999999998865553

>PRK03839 putative kinase; Provisional

Probab=95.30  E-value=0.015  Score=50.48  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=20.1

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      +|+|+|.+||||||+.+++...+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~   24 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999986444

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.26  E-value=0.013  Score=56.10  Aligned_cols=24  Identities=38%  Similarity=0.513  Sum_probs=20.7

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      =++|||++||||||+++-+..|..
T Consensus        31 f~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            378999999999999999876664

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.22  E-value=0.016  Score=46.67  Aligned_cols=19  Identities=37%  Similarity=0.483  Sum_probs=17.5

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      |+|.|.+||||||+++.+.
T Consensus         1 I~i~G~~GsGKtTia~~L~   19 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELA   19 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHH
Confidence            6899999999999999985

...

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=95.21  E-value=0.012  Score=50.13  Aligned_cols=22  Identities=18%  Similarity=0.510  Sum_probs=17.0

Q ss_pred             cEEEecCCCCChhHHHHHHHHh
Q 018283           49 KLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l   70 (358)
                      ||+|.|+.++|||||++.+...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999998633

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.21  E-value=0.21  Score=50.73  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=18.5

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      .-.|+|+|++|+||||++..+-
T Consensus       350 G~vIaLVGPtGvGKTTtaakLA  371 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLA  371 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3478899999999999987763

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.16  E-value=0.016  Score=46.14  Aligned_cols=19  Identities=21%  Similarity=0.429  Sum_probs=17.2

Q ss_pred             cEEEecCCCCChhHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~   67 (358)
                      .++++|++||||||+++.+
T Consensus        17 ~v~I~GpSGsGKSTLl~~l   35 (107)
T cd00820          17 GVLITGDSGIGKTELALEL   35 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHh
Confidence            5899999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=95.16  E-value=0.11  Score=43.13  Aligned_cols=65  Identities=17%  Similarity=0.255  Sum_probs=42.4

Q ss_pred             eEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 018283          187 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI  266 (358)
Q Consensus       187 ~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl  266 (358)
                      ..+.++|+++.-  .......+..+|.+++|++.           +..++......++.+....  ...++.++.|+.+-
T Consensus        45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~-----------~~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~  109 (139)
T cd02038          45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTP-----------EPTSITDAYALIKKLAKQL--RVLNFRVVVNRAES  109 (139)
T ss_pred             CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCC-----------ChhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence            567999998753  23344678899999999974           3444444444444443321  34578899999874

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=95.13  E-value=0.02  Score=41.62  Aligned_cols=19  Identities=37%  Similarity=0.604  Sum_probs=17.4

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      |.+.|.+||||||+.+++.
T Consensus         2 i~i~G~~gsGKst~~~~l~   20 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLA   20 (69)
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6789999999999999985

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK01889 GTPase RsgA; Reviewed

Probab=95.10  E-value=0.13  Score=49.91  Aligned_cols=47  Identities=19%  Similarity=0.183  Sum_probs=27.7

Q ss_pred             hcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchh
Q 018283          208 FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       208 ~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~  268 (358)
                      ..|+|.+++|+++.       .+-+...++..+...    .   ..+++.+||+||+||..
T Consensus       110 aANvD~vliV~s~~-------p~~~~~~ldr~L~~a----~---~~~i~piIVLNK~DL~~  156 (356)
T PRK01889        110 AANVDTVFIVCSLN-------HDFNLRRIERYLALA----W---ESGAEPVIVLTKADLCE  156 (356)
T ss_pred             EEeCCEEEEEEecC-------CCCChhHHHHHHHHH----H---HcCCCEEEEEEChhcCC
Confidence            46899999999972       011112222222221    1   13567789999999953

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.05  E-value=0.018  Score=52.04  Aligned_cols=23  Identities=30%  Similarity=0.377  Sum_probs=19.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -|.++|++|||||||++-+-.+-
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            58899999999999999875443

>PLN03232 ABC transporter C family member; Provisional

Probab=95.05  E-value=0.018  Score=65.96  Aligned_cols=46  Identities=9%  Similarity=0.165  Sum_probs=31.9

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhcCC------------CCCHHHHHHHHHHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLFQT------------GFDEAELKSYISVIHANVY   92 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~~~------------~f~~~e~~~~~~~I~~n~~   92 (358)
                      .-+++++|++|||||||++-+-..+.+            +|-+++...+..+|+.|+.
T Consensus       643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~  700 (1495)
T PLN03232        643 GSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENIL  700 (1495)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhh
Confidence            347899999999999999988655532            1334455555566666664

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=95.04  E-value=0.8  Score=46.27  Aligned_cols=58  Identities=16%  Similarity=0.138  Sum_probs=38.0

Q ss_pred             hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhh
Q 018283          199 NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEK  269 (358)
Q Consensus       199 ~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~e  269 (358)
                      ..-++..+|..+.++||+|+-=          .+   ...-......++......+..-|+|++|.||.++
T Consensus       437 ~I~~msKayM~NPNAIILCIQD----------GS---VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk  494 (980)
T KOG0447|consen  437 TIFSISKAYMQNPNAIILCIQD----------GS---VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK  494 (980)
T ss_pred             HHHHHHHHHhcCCCeEEEEecc----------CC---cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence            4567788999999999999831          11   1111222334444434446778999999999876

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.04  E-value=0.018  Score=52.67  Aligned_cols=24  Identities=42%  Similarity=0.621  Sum_probs=20.1

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      =++++|++||||||++|.+..+..
T Consensus        29 f~vliGpSGsGKTTtLkMINrLie   52 (309)
T COG1125          29 FLVLIGPSGSGKTTTLKMINRLIE   52 (309)
T ss_pred             EEEEECCCCCcHHHHHHHHhcccC
Confidence            367889999999999998865554

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.03  E-value=0.018  Score=55.54  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=19.5

Q ss_pred             EEEecCCCCChhHHHHHHHHhcC
Q 018283           50 LLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~~   72 (358)
                      +.|||++||||||+++.+.-+..
T Consensus        34 ~~lLGPSGcGKTTlLR~IAGfe~   56 (352)
T COG3842          34 VTLLGPSGCGKTTLLRMIAGFEQ   56 (352)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            66999999999999998865554

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=95.01  E-value=0.034  Score=47.66  Aligned_cols=21  Identities=29%  Similarity=0.523  Sum_probs=18.5

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      --++++|++|+|||||++.+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~   56 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALL   56 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            367899999999999999874

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG4639 Predicted kinase [General function prediction only]

Probab=94.98  E-value=0.056  Score=45.79  Aligned_cols=17  Identities=53%  Similarity=0.673  Sum_probs=15.9

Q ss_pred             EEEecCCCCChhHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQ   66 (358)
Q Consensus        50 illlG~~~sGKSTi~kq   66 (358)
                      |+|+|+++|||||++++
T Consensus         5 vvL~G~~~sGKsT~ak~   21 (168)
T COG4639           5 VVLRGASGSGKSTFAKE   21 (168)
T ss_pred             EEEecCCCCchhHHHHH
Confidence            67889999999999998

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=94.96  E-value=0.02  Score=47.07  Aligned_cols=21  Identities=33%  Similarity=0.607  Sum_probs=18.7

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      -.++|+|+.|||||||++.+.
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~   32 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALA   32 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHT
T ss_pred             CEEEEEccCCCccccceeeec
Confidence            478999999999999999874

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=94.95  E-value=0.35  Score=45.13  Aligned_cols=20  Identities=30%  Similarity=0.567  Sum_probs=18.3

Q ss_pred             ccEEEecCCCCChhHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~   67 (358)
                      -+++++|++|+||||++..+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l   95 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKM   95 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHH
Confidence            58999999999999998876

>PRK14530 adenylate kinase; Provisional

Probab=94.94  E-value=0.022  Score=51.13  Aligned_cols=25  Identities=36%  Similarity=0.489  Sum_probs=21.3

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+|+|+|++||||||+.+.+...++
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~~   28 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEFG   28 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3799999999999999999865554

>PTZ00088 adenylate kinase 1; Provisional

Probab=94.94  E-value=0.022  Score=51.80  Aligned_cols=27  Identities=26%  Similarity=0.249  Sum_probs=22.4

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhcC
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ..+||+|+|++||||||+.+++...|+
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~g   31 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKEN   31 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            346899999999999999999865443

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=94.94  E-value=0.37  Score=36.18  Aligned_cols=19  Identities=26%  Similarity=0.581  Sum_probs=16.2

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      +++.|.+|+||||+...+.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~   20 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLA   20 (99)
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5788999999999988763

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK13949 shikimate kinase; Provisional

Probab=94.91  E-value=0.025  Score=48.90  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=20.8

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      +|+|+|..||||||+.+.+...++
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~   26 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELG   26 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            799999999999999999865444

>PRK14532 adenylate kinase; Provisional

Probab=94.90  E-value=0.024  Score=49.58  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=20.1

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      +|+|+|++||||||+.+++..-+
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~   24 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEER   24 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            69999999999999999985444

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=94.84  E-value=0.027  Score=49.74  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.1

Q ss_pred             EEEecCCCCChhHHHHHHHHhc
Q 018283           50 LLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~   71 (358)
                      |.|.|++||||||+++.+..++
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999986554

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=94.82  E-value=0.22  Score=49.60  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=18.4

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      ..-|+++|..||||||++..+.
T Consensus        95 p~vI~lvG~~GsGKTTtaakLA  116 (437)
T PRK00771         95 PQTIMLVGLQGSGKTTTAAKLA  116 (437)
T ss_pred             CeEEEEECCCCCcHHHHHHHHH
Confidence            4568899999999999987763

>TIGR03263 guanyl_kin guanylate kinase

Probab=94.82  E-value=0.021  Score=49.38  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=18.6

Q ss_pred             cEEEecCCCCChhHHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~   69 (358)
                      .|+|+|++||||||+++.+..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~   23 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLE   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            578999999999999998853

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.81  E-value=0.32  Score=47.52  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=18.0

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      .--++++|+.||||||++..+.
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA  227 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLG  227 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3357899999999999988763

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=94.77  E-value=0.023  Score=49.57  Aligned_cols=21  Identities=29%  Similarity=0.344  Sum_probs=18.2

Q ss_pred             cccEEEecCCCCChhHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~   67 (358)
                      .-.+.|+|++|||||||++.+
T Consensus        21 G~~~~l~G~nG~GKSTLl~~i   41 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEG   41 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHH
Confidence            347899999999999999865

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.75  E-value=0.024  Score=49.98  Aligned_cols=24  Identities=25%  Similarity=0.483  Sum_probs=19.8

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      --|+++|++||||||+++-+.-+.
T Consensus        32 e~vv~lGpSGcGKTTLLnl~AGf~   55 (259)
T COG4525          32 ELVVVLGPSGCGKTTLLNLIAGFV   55 (259)
T ss_pred             CEEEEEcCCCccHHHHHHHHhcCc
Confidence            368899999999999999875433

>PRK14974 cell division protein FtsY; Provisional

Probab=94.74  E-value=0.29  Score=47.08  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=18.3

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      ..-|+++|..|+||||++..+.
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA  161 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLA  161 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHH
Confidence            4578899999999999877663

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=94.72  E-value=0.028  Score=49.13  Aligned_cols=24  Identities=33%  Similarity=0.524  Sum_probs=20.5

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      +|+|+|++||||||+.+++...++
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~   24 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYG   24 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC
Confidence            589999999999999999865443

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.71  E-value=0.026  Score=51.09  Aligned_cols=65  Identities=11%  Similarity=0.186  Sum_probs=39.3

Q ss_pred             cCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhh
Q 018283          194 VGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEK  269 (358)
Q Consensus       194 ~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~e  269 (358)
                      .|||..-=..-+...+++..++-==.++        +-+...-...++.++.+...   .+..+++-+.-.|+..+
T Consensus       149 SGGQQQRVaIARaL~Q~pkiILADEPva--------sLDp~~a~~Vm~~l~~in~~---~g~Tvi~nLH~vdlA~~  213 (258)
T COG3638         149 SGGQQQRVAIARALVQQPKIILADEPVA--------SLDPESAKKVMDILKDINQE---DGITVIVNLHQVDLAKK  213 (258)
T ss_pred             CcchhHHHHHHHHHhcCCCEEecCCccc--------ccChhhHHHHHHHHHHHHHH---cCCEEEEEechHHHHHH
Confidence            4777665555666677777655311111        12344556677788887654   35778888888887543

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=94.69  E-value=0.061  Score=48.75  Aligned_cols=38  Identities=18%  Similarity=0.233  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHH
Q 018283           32 EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        32 ~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~   69 (358)
                      .+-..|..-.....+..-+.|.|++|||||||++.+..
T Consensus        18 ~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~   55 (229)
T PRK09270         18 PLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEA   55 (229)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            33344444333334566788999999999999998753

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=94.69  E-value=0.027  Score=45.60  Aligned_cols=19  Identities=32%  Similarity=0.599  Sum_probs=17.4

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      |||.|++|+||||+++.+.
T Consensus         1 ill~G~~G~GKT~l~~~la   19 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALA   19 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHH
Confidence            6899999999999999874

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=94.67  E-value=0.024  Score=49.24  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=18.5

Q ss_pred             cEEEecCCCCChhHHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~   69 (358)
                      .|+++|++||||||+++.+..
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998853

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK02496 adk adenylate kinase; Provisional

Probab=94.67  E-value=0.028  Score=48.94  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=20.6

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ++++++|++||||||+.+.+...+
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~   25 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999986444

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=94.67  E-value=0.079  Score=49.82  Aligned_cols=90  Identities=22%  Similarity=0.190  Sum_probs=53.5

Q ss_pred             HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCccccccc
Q 018283          204 WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFK  283 (358)
Q Consensus       204 w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~  283 (358)
                      -......+|.+|+|+|..+..      ...+      ..+...+.     +.|+++|+||+||....             
T Consensus        18 l~~~l~~aDvIL~VvDar~p~------~~~~------~~l~~~~~-----~kp~iiVlNK~DL~~~~-------------   67 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPL------SSEN------PMIDKIIG-----NKPRLLILNKSDLADPE-------------   67 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCC------CCCC------hhHHHHhC-----CCCEEEEEEchhcCCHH-------------
Confidence            344578999999999974210      1111      12223322     57999999999984221             


Q ss_pred             ccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHH
Q 018283          284 DYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       284 ~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~  349 (358)
                                ......+|+    .+.            ...++.+||+++.+++.+.+.+.+.+-.
T Consensus        68 ----------~~~~~~~~~----~~~------------~~~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         68 ----------VTKKWIEYF----EEQ------------GIKALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             ----------HHHHHHHHH----HHc------------CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence                      011222222    110            1235678999999999998888776643

>PLN03130 ABC transporter C family member; Provisional

Probab=94.66  E-value=0.029  Score=64.63  Aligned_cols=47  Identities=9%  Similarity=0.150  Sum_probs=32.0

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhcCC------------CCCHHHHHHHHHHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLFQT------------GFDEAELKSYISVIHANVY   92 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~~~------------~f~~~e~~~~~~~I~~n~~   92 (358)
                      +.-+++++|++|||||||++-+-..+.+            +|-+++...+..+|+.|+.
T Consensus       642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~  700 (1622)
T PLN03130        642 VGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNIL  700 (1622)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHh
Confidence            3347899999999999999988655532            1334455555556666664

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=94.64  E-value=0.18  Score=53.40  Aligned_cols=20  Identities=30%  Similarity=0.424  Sum_probs=17.4

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -++++|+.||||||.+..+-
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA  206 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLA  206 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            47899999999999988774

>TIGR01351 adk adenylate kinases

Probab=94.63  E-value=0.03  Score=50.03  Aligned_cols=23  Identities=43%  Similarity=0.583  Sum_probs=19.9

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ||+|+|++||||||+.+++.--|
T Consensus         1 rI~i~G~pGsGKsT~a~~La~~~   23 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAEKY   23 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999985444

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=94.61  E-value=0.026  Score=48.12  Aligned_cols=21  Identities=38%  Similarity=0.534  Sum_probs=18.1

Q ss_pred             EEEecCCCCChhHHHHHHHHh
Q 018283           50 LLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l   70 (358)
                      |+|+|++||||||+.+.+...
T Consensus         1 i~l~G~~GsGKSTla~~l~~~   21 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHR   21 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHh
Confidence            578999999999999998643

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>TIGR00235 udk uridine kinase

Probab=94.61  E-value=0.029  Score=50.00  Aligned_cols=25  Identities=24%  Similarity=0.208  Sum_probs=20.4

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ..-|.+.|++||||||+++.+..+.
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~~l   30 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYEQL   30 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3457899999999999999986443

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK14531 adenylate kinase; Provisional

Probab=94.60  E-value=0.033  Score=48.66  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=20.6

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+|+++|++||||||+.+++..-+
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~   26 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAH   26 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999985444

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.60  E-value=0.1  Score=57.51  Aligned_cols=74  Identities=16%  Similarity=0.340  Sum_probs=42.3

Q ss_pred             EEEecCCCc--------hhhhhHhhh------h---cCCcEEEEEEEccccccccccccccchHHHH--HHH-HHHHHcC
Q 018283          190 RLFDVGGQR--------NERRKWIHL------F---EGVSAVIFCAAISEYDQTLFEDEQKNRMMET--KEL-FDWVLKQ  249 (358)
Q Consensus       190 ~i~D~~Gq~--------~~r~~w~~y------~---~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~--~~~-~~~i~~~  249 (358)
                      .+.||+|..        .-++-|.++      +   +-.++||..+|+++--.    .....+...+  +.. +.++.. 
T Consensus       177 VlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~----~~~~~~~~~~~~LR~RL~El~~-  251 (1188)
T COG3523         177 VLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLT----ADPAEREALARTLRARLQELRE-  251 (1188)
T ss_pred             EEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcC----CCHHHHHHHHHHHHHHHHHHHH-
Confidence            456777753        335678754      2   36799999999975321    1112221112  221 333322 


Q ss_pred             CCCCCCcEEEEeeCCCchh
Q 018283          250 PCFEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       250 ~~~~~~~iilv~NK~Dl~~  268 (358)
                      ...-..|++|++||.|+..
T Consensus       252 tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         252 TLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             hhccCCceEEEEecccccc
Confidence            1223679999999999853

>PRK00300 gmk guanylate kinase; Provisional

Probab=94.59  E-value=0.031  Score=49.44  Aligned_cols=26  Identities=27%  Similarity=0.234  Sum_probs=21.1

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhc
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ...-|+|+|++||||||+++.+...+
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34468999999999999999986443

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=94.58  E-value=0.031  Score=48.47  Aligned_cols=22  Identities=36%  Similarity=0.472  Sum_probs=18.9

Q ss_pred             EEEecCCCCChhHHHHHHHHhc
Q 018283           50 LLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~   71 (358)
                      |+++|++||||||+.+++..-+
T Consensus         2 i~i~G~pGsGKst~a~~la~~~   23 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENF   23 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            6899999999999999985444

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK08233 hypothetical protein; Provisional

Probab=94.56  E-value=0.027  Score=48.63  Aligned_cols=21  Identities=14%  Similarity=0.368  Sum_probs=18.0

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      .-|.+.|.+||||||+.+++.
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~   24 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLT   24 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            346678999999999999985

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=94.55  E-value=0.036  Score=47.98  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=19.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -|+|.|.+||||||+.+.+....
T Consensus         4 ~i~l~G~~gsGKst~a~~l~~~~   26 (175)
T cd00227           4 IIILNGGSSAGKSSIARALQSVL   26 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            37888999999999999986444

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=94.53  E-value=0.029  Score=45.08  Aligned_cols=21  Identities=29%  Similarity=0.593  Sum_probs=18.7

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      ..++|+|++|+||||+++.+.
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~   23 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALA   23 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHH
Confidence            368999999999999999875

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=94.52  E-value=0.028  Score=51.78  Aligned_cols=24  Identities=38%  Similarity=0.463  Sum_probs=19.8

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      =+.++|+.|||||||+|-+..+..
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g~l~   53 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAGLLK   53 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhccCC
Confidence            367899999999999999865443

>PRK00279 adk adenylate kinase; Reviewed

Probab=94.43  E-value=0.036  Score=49.73  Aligned_cols=24  Identities=38%  Similarity=0.487  Sum_probs=20.4

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ++|+|+|++||||||+.+.+..-+
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~   24 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKY   24 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            379999999999999999885444

>PRK14738 gmk guanylate kinase; Provisional

Probab=94.42  E-value=0.029  Score=50.05  Aligned_cols=22  Identities=14%  Similarity=0.392  Sum_probs=18.8

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      ..-|+|+|++||||||+++++.
T Consensus        13 ~~~ivi~GpsG~GK~tl~~~L~   34 (206)
T PRK14738         13 PLLVVISGPSGVGKDAVLARMR   34 (206)
T ss_pred             CeEEEEECcCCCCHHHHHHHHH
Confidence            4457788999999999999885

>PRK05480 uridine/cytidine kinase; Provisional

Probab=94.42  E-value=0.034  Score=49.52  Aligned_cols=26  Identities=27%  Similarity=0.221  Sum_probs=21.6

Q ss_pred             hccccEEEecCCCCChhHHHHHHHHh
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~~l   70 (358)
                      ++...|.|.|++|||||||++.+...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34567899999999999999988543

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=94.41  E-value=0.031  Score=46.84  Aligned_cols=20  Identities=35%  Similarity=0.546  Sum_probs=17.7

Q ss_pred             EEEecCCCCChhHHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~   69 (358)
                      +++.|.+||||||+.+++..
T Consensus         2 i~l~G~~GsGKST~a~~l~~   21 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAE   21 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHh
Confidence            67899999999999999853

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=94.33  E-value=0.039  Score=52.94  Aligned_cols=30  Identities=27%  Similarity=0.461  Sum_probs=25.4

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcCCCCCH
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQTGFDE   77 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~~~f~~   77 (358)
                      -+|+++|++|+|||||++.+...++..+-+
T Consensus       163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~  192 (325)
T TIGR01526       163 KTVAILGGESTGKSTLVNKLAAVFNTTSAW  192 (325)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence            389999999999999999998777766533

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.26  E-value=0.041  Score=47.86  Aligned_cols=25  Identities=32%  Similarity=0.539  Sum_probs=21.0

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcCC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      -|-++|.+|||||||++-+..+-.+
T Consensus        34 VisIIGsSGSGKSTfLRCiN~LE~P   58 (256)
T COG4598          34 VISIIGSSGSGKSTFLRCINFLEKP   58 (256)
T ss_pred             EEEEecCCCCchhHHHHHHHhhcCC
Confidence            4779999999999999998766553

>PRK10867 signal recognition particle protein; Provisional

Probab=94.26  E-value=0.47  Score=47.29  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=17.0

Q ss_pred             cccEEEecCCCCChhHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~   67 (358)
                      ..-|+++|..||||||++-.+
T Consensus       100 p~vI~~vG~~GsGKTTtaakL  120 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKL  120 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHH
Confidence            346889999999999976555

>PF13173 AAA_14: AAA domain

Probab=94.26  E-value=0.036  Score=45.34  Aligned_cols=19  Identities=37%  Similarity=0.690  Sum_probs=17.1

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      ++|.|+.+|||||+++|+.
T Consensus         5 ~~l~G~R~vGKTtll~~~~   23 (128)
T PF13173_consen    5 IILTGPRGVGKTTLLKQLA   23 (128)
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6788999999999999974

>PRK13695 putative NTPase; Provisional

Probab=94.25  E-value=0.036  Score=47.89  Aligned_cols=20  Identities=30%  Similarity=0.429  Sum_probs=18.4

Q ss_pred             ccEEEecCCCCChhHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~   67 (358)
                      +||+|.|++|+||||+++.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i   20 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKI   20 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999875

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.22  E-value=0.4  Score=47.07  Aligned_cols=21  Identities=24%  Similarity=0.510  Sum_probs=18.1

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      .-|+++|+.|+||||.+..+.
T Consensus       175 ~vi~lvGptGvGKTTT~aKLA  195 (388)
T PRK12723        175 RVFILVGPTGVGKTTTIAKLA  195 (388)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            468899999999999988774

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=94.18  E-value=0.61  Score=44.27  Aligned_cols=20  Identities=30%  Similarity=0.551  Sum_probs=18.0

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -|.++|=.+||||||+|++.
T Consensus       180 viavVGYTNaGKsTLikaLT  199 (410)
T KOG0410|consen  180 VIAVVGYTNAGKSTLIKALT  199 (410)
T ss_pred             eEEEEeecCccHHHHHHHHH
Confidence            47899999999999999984

>PRK14737 gmk guanylate kinase; Provisional

Probab=94.18  E-value=0.036  Score=48.68  Aligned_cols=19  Identities=26%  Similarity=0.485  Sum_probs=17.4

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      |+|+|++|||||||.+++.
T Consensus         7 ivl~GpsG~GK~tl~~~l~   25 (186)
T PRK14737          7 FIISSVAGGGKSTIIQALL   25 (186)
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7788999999999999985

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=94.17  E-value=0.04  Score=49.06  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=21.4

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhc
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .. .+.|+|++|||||||++-+..++
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            35 88999999999999999887554

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00625 shikimate kinase; Provisional

Probab=94.16  E-value=0.048  Score=47.39  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=19.8

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .|+|+|.+||||||+.+++...+
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l   24 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFL   24 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999985433

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=94.14  E-value=0.08  Score=42.89  Aligned_cols=22  Identities=36%  Similarity=0.578  Sum_probs=19.3

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      ..-+++.|++|+|||++++.+.
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~   40 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIA   40 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4468999999999999999874

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd01858 NGP_1 NGP-1

Probab=94.14  E-value=0.038  Score=46.85  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=20.4

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ....|+++|.+++||||+++.+.
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~  123 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLR  123 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHh
Confidence            45688899999999999999984

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=94.14  E-value=0.037  Score=49.20  Aligned_cols=20  Identities=40%  Similarity=0.644  Sum_probs=17.8

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -++|+|++|+||||++|++.
T Consensus        27 ~~~ltGpNg~GKSTllr~i~   46 (199)
T cd03283          27 GILITGSNMSGKSTFLRTIG   46 (199)
T ss_pred             EEEEECCCCCChHHHHHHHH
Confidence            46889999999999999974

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=94.12  E-value=0.038  Score=48.20  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=20.5

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .-.+.|+|++|||||||++-+..+.
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCC
Confidence            3478899999999999999875443

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=94.11  E-value=0.041  Score=45.47  Aligned_cols=19  Identities=32%  Similarity=0.679  Sum_probs=17.8

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      |+|+|++|+|||++++++.
T Consensus         2 vlL~G~~G~GKt~l~~~la   20 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELA   20 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7999999999999999985

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=94.10  E-value=0.039  Score=49.35  Aligned_cols=26  Identities=31%  Similarity=0.372  Sum_probs=21.6

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhcC
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .-.+.|+|++|||||||++-+..+..
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        29 GEMVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34789999999999999998865553

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=94.10  E-value=0.039  Score=49.35  Aligned_cols=25  Identities=28%  Similarity=0.305  Sum_probs=21.1

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .-.+.|+|++|||||||++-+..+.
T Consensus        30 G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          30 GEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            3478999999999999999886554

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=94.09  E-value=0.81  Score=43.71  Aligned_cols=83  Identities=18%  Similarity=0.234  Sum_probs=51.1

Q ss_pred             eeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH
Q 018283          165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD  244 (358)
Q Consensus       165 ~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~  244 (358)
                      |.-|.....+.+      ......+--.|++|+..|-+-...=-..-|++|+||+-+|        .......+.+-+-+
T Consensus       101 RGITIn~aHveY------eTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatD--------G~MPQTrEHlLLAr  166 (449)
T KOG0460|consen  101 RGITINAAHVEY------ETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATD--------GPMPQTREHLLLAR  166 (449)
T ss_pred             ccceEeeeeeee------eccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCC--------CCCcchHHHHHHHH
Confidence            444444444555      4444556677999998775444333344689999998752        33344444444444


Q ss_pred             HHHcCCCCCCCcEEEEeeCCCch
Q 018283          245 WVLKQPCFEKTSFMLFLNKFDIF  267 (358)
Q Consensus       245 ~i~~~~~~~~~~iilv~NK~Dl~  267 (358)
                      ++      .-..|++|.||.|+.
T Consensus       167 QV------GV~~ivvfiNKvD~V  183 (449)
T KOG0460|consen  167 QV------GVKHIVVFINKVDLV  183 (449)
T ss_pred             Hc------CCceEEEEEeccccc
Confidence            43      124789999999997

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=94.05  E-value=0.054  Score=54.11  Aligned_cols=20  Identities=35%  Similarity=0.499  Sum_probs=17.5

Q ss_pred             ccccEEEecCCCCChhHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFK   65 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~k   65 (358)
                      ..--++|+|++|||||||++
T Consensus        31 ~GEiv~L~G~SGsGKSTLLr   50 (504)
T TIGR03238        31 SSSLLFLCGSSGDGKSEILA   50 (504)
T ss_pred             CCCEEEEECCCCCCHHHHHh
Confidence            34468899999999999999

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=94.04  E-value=0.036  Score=58.47  Aligned_cols=28  Identities=32%  Similarity=0.479  Sum_probs=24.5

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhcCC
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      ..-+|.++|.+||||||++|-+..+|.+
T Consensus       498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p  525 (709)
T COG2274         498 PGEKVAIVGRSGSGKSTLLKLLLGLYKP  525 (709)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4458999999999999999999888865

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=94.02  E-value=0.042  Score=48.74  Aligned_cols=25  Identities=28%  Similarity=0.333  Sum_probs=21.1

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .-.+.|+|++|||||||++-+..+.
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          26 GEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3478999999999999999886554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=94.00  E-value=0.043  Score=48.92  Aligned_cols=25  Identities=32%  Similarity=0.336  Sum_probs=21.0

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .-.+.|+|++|||||||++-+..++
T Consensus        27 G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          27 GEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3368899999999999999886554

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=93.98  E-value=0.036  Score=57.10  Aligned_cols=27  Identities=30%  Similarity=0.458  Sum_probs=23.2

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhcC
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      +.-+++++|++|||||||++-+-.++.
T Consensus       357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~  383 (571)
T TIGR02203       357 PGETVALVGRSGSGKSTLVNLIPRFYE  383 (571)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            445889999999999999999877765

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=93.98  E-value=0.034  Score=58.83  Aligned_cols=28  Identities=36%  Similarity=0.447  Sum_probs=23.7

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhcCC
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      +.-++.++|++|||||||+|-+..+|.+
T Consensus       490 ~G~~iaIvG~sGsGKSTLlklL~gl~~p  517 (694)
T TIGR03375       490 PGEKVAIIGRIGSGKSTLLKLLLGLYQP  517 (694)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3458999999999999999999777753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK06762 hypothetical protein; Provisional

Probab=93.98  E-value=0.053  Score=46.27  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=19.3

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -|++.|.+||||||+.+++..-+
T Consensus         4 li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          4 LIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47788999999999999986444

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=93.97  E-value=0.043  Score=56.05  Aligned_cols=28  Identities=29%  Similarity=0.438  Sum_probs=23.6

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhcCC
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      +.-+++++|++||||||+++-+..++.+
T Consensus       360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p  387 (529)
T TIGR02868       360 PGERVAILGPSGSGKSTLLMLLTGLLDP  387 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4458999999999999999998766654

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=93.97  E-value=0.043  Score=48.04  Aligned_cols=23  Identities=43%  Similarity=0.615  Sum_probs=19.8

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+.|+|++|||||||++-+..++
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999876544

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=93.97  E-value=0.053  Score=46.94  Aligned_cols=25  Identities=32%  Similarity=0.497  Sum_probs=20.8

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+|+++|..||||||+.+.+....+
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~l~   29 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQLN   29 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHHcC
Confidence            3799999999999999999854433

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=93.95  E-value=0.045  Score=49.45  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=18.4

Q ss_pred             EEEecCCCCChhHHHHHHHHhc
Q 018283           50 LLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~   71 (358)
                      |.+.|++||||||+++.+..+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~l   23 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALL   23 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHH
Confidence            5688999999999999986443

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=93.93  E-value=0.026  Score=59.86  Aligned_cols=28  Identities=32%  Similarity=0.430  Sum_probs=24.0

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhcCC
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      +.-+++++|++||||||+++-+..++.+
T Consensus       506 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~p  533 (711)
T TIGR00958       506 PGEVVALVGPSGSGKSTVAALLQNLYQP  533 (711)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence            4457999999999999999999877754

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=93.92  E-value=0.044  Score=49.92  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=21.1

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .-.++|+|++|||||||++-+..++
T Consensus        28 Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        28 GEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3478999999999999999886554

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=93.91  E-value=0.046  Score=45.51  Aligned_cols=21  Identities=24%  Similarity=0.411  Sum_probs=19.1

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      -+++++|.+++||||+++++.
T Consensus        84 ~~~~~~G~~~vGKstlin~l~  104 (141)
T cd01857          84 ATIGLVGYPNVGKSSLINALV  104 (141)
T ss_pred             cEEEEECCCCCCHHHHHHHHh
Confidence            389999999999999999874

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK14529 adenylate kinase; Provisional

Probab=93.91  E-value=0.052  Score=49.13  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=21.0

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ++|+|+|++||||||+.+++..-++
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~~~~   25 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKKKYD   25 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3799999999999999998864443

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=93.90  E-value=0.074  Score=50.08  Aligned_cols=27  Identities=26%  Similarity=0.271  Sum_probs=21.3

Q ss_pred             hccccEEEecCCCCChhHHHHHHHHhc
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      +..+=|.+.|++||||||+++.+..+.
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll   86 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALL   86 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            445667799999999999998875433

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=93.89  E-value=0.046  Score=48.77  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=20.9

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .-.+.|+|++|||||||++-+..+.
T Consensus        28 G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        28 GEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3478999999999999999886554

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK14528 adenylate kinase; Provisional

Probab=93.89  E-value=0.053  Score=47.57  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.0

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      +|+++|++||||||+.+++..-+
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~   25 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERL   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999985444

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.88  E-value=0.043  Score=50.09  Aligned_cols=27  Identities=37%  Similarity=0.604  Sum_probs=22.6

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhcCC
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      .-.++++|++||||||+++.+..+..+
T Consensus        30 Ge~~~i~G~nGsGKSTL~~~l~GLl~p   56 (235)
T COG1122          30 GERVLLIGPNGSGKSTLLKLLNGLLKP   56 (235)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCcCcC
Confidence            347899999999999999999766644

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=93.87  E-value=0.045  Score=49.05  Aligned_cols=23  Identities=30%  Similarity=0.278  Sum_probs=20.0

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+.|+|++||||||++|-+..+.
T Consensus        15 ~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         15 HIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68899999999999999886554

>PRK00131 aroK shikimate kinase; Reviewed

Probab=93.86  E-value=0.059  Score=45.96  Aligned_cols=26  Identities=27%  Similarity=0.285  Sum_probs=21.2

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhcC
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ...|+|+|.+||||||+.+.+...++
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~~l~   29 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAKRLG   29 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence            44789999999999999998854443

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=93.85  E-value=0.44  Score=44.23  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.4

Q ss_pred             ccccEEEecCCCCChhHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~   67 (358)
                      +...++++|.+++|||+|++-+
T Consensus       135 ~~pe~~~~g~SNVGKSSLln~~  156 (320)
T KOG2486|consen  135 KRPELAFYGRSNVGKSSLLNDL  156 (320)
T ss_pred             CCceeeeecCCcccHHHHHhhh
Confidence            4578999999999999999865

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.85  E-value=0.22  Score=48.09  Aligned_cols=21  Identities=29%  Similarity=0.453  Sum_probs=19.3

Q ss_pred             cccEEEecCCCCChhHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~   67 (358)
                      .+.++++|++|.|||||++.|
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsL   41 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSL   41 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHH
Confidence            578999999999999999986

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=93.82  E-value=0.048  Score=48.51  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+.|+|++|||||||++-+..++
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          28 IFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999886554

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=93.80  E-value=0.049  Score=48.45  Aligned_cols=24  Identities=33%  Similarity=0.599  Sum_probs=20.3

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -.+.|+|++|||||||++-+..+.
T Consensus        28 ~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          28 EFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            368899999999999999886544

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=93.79  E-value=0.045  Score=49.61  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=20.5

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -.+.|+|++|||||||++-+..+.
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          27 EIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCC
Confidence            368999999999999999886544

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>smart00072 GuKc Guanylate kinase homologues

Probab=93.79  E-value=0.056  Score=47.21  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=19.2

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      =|+|+|++||||+|+.+++..-+
T Consensus         4 ~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        4 PIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            37899999999999999985433

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=93.78  E-value=0.049  Score=49.32  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=21.7

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhcC
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .-.+.|+|++|||||||++-+..++.
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          31 GEIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34788999999999999999866553

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=93.78  E-value=0.42  Score=46.73  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=16.6

Q ss_pred             cccEEEecCCCCChhHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~   67 (358)
                      .--|+|+|+.|+||||.+=.|
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKL  223 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKL  223 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHH
Confidence            335789999999999876555

>TIGR00959 ffh signal recognition particle protein

Probab=93.77  E-value=0.62  Score=46.36  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=17.8

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      ..-++++|..||||||++-.+.
T Consensus        99 p~vi~~vG~~GsGKTTtaakLA  120 (428)
T TIGR00959        99 PTVILMVGLQGSGKTTTCGKLA  120 (428)
T ss_pred             CEEEEEECCCCCcHHHHHHHHH
Confidence            3458899999999999976653

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=93.76  E-value=0.05  Score=48.76  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=20.7

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++|||||||++-+..++.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          30 IFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            688999999999999998865553

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=93.75  E-value=0.049  Score=49.42  Aligned_cols=24  Identities=38%  Similarity=0.570  Sum_probs=20.7

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -.+.|+|++|||||||++-+..+.
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          27 EILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999886554

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=93.75  E-value=0.05  Score=48.42  Aligned_cols=25  Identities=36%  Similarity=0.559  Sum_probs=21.1

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .-.+.|+|++|||||||++-+..++
T Consensus        26 G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          26 GEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3378999999999999999886554

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=93.75  E-value=0.05  Score=48.51  Aligned_cols=24  Identities=38%  Similarity=0.484  Sum_probs=20.3

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -.+.|+|++|||||||++-+..+.
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          27 EFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            368899999999999999886544

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=93.75  E-value=0.061  Score=45.98  Aligned_cols=24  Identities=38%  Similarity=0.663  Sum_probs=21.2

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .++|+|++|+||||+++-+.++-.
T Consensus        30 tlvllgpsgagkssllr~lnlle~   53 (242)
T COG4161          30 TLVLLGPSGAGKSSLLRVLNLLEM   53 (242)
T ss_pred             EEEEECCCCCchHHHHHHHHHHhC
Confidence            689999999999999999877654

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=93.75  E-value=0.052  Score=48.09  Aligned_cols=25  Identities=36%  Similarity=0.529  Sum_probs=21.2

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -.+.|+|++|||||||++-+..++.
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        25 KMYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3689999999999999998875553

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=93.75  E-value=0.059  Score=46.96  Aligned_cols=20  Identities=40%  Similarity=0.632  Sum_probs=17.7

Q ss_pred             EEEecCCCCChhHHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~   69 (358)
                      |+|+|++|||||||.+.+..
T Consensus         5 ivl~Gpsg~GK~~l~~~L~~   24 (183)
T PF00625_consen    5 IVLVGPSGSGKSTLAKRLIQ   24 (183)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999998753

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PLN02674 adenylate kinase

Probab=93.74  E-value=0.11  Score=47.68  Aligned_cols=29  Identities=34%  Similarity=0.365  Sum_probs=23.9

Q ss_pred             hhccccEEEecCCCCChhHHHHHHHHhcC
Q 018283           44 EKHIQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        44 ~~~~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+...+|+|+|++||||+|+.+.+..-|+
T Consensus        28 ~~~~~~i~l~G~PGsGKgT~a~~La~~~~   56 (244)
T PLN02674         28 SKPDKRLILIGPPGSGKGTQSPIIKDEYC   56 (244)
T ss_pred             cccCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            44567899999999999999999865443

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=93.74  E-value=0.049  Score=47.51  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=19.1

Q ss_pred             ccEEEecCCCCChhHHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~   69 (358)
                      -++.++|++||||||+++-+.-
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHh
Confidence            3789999999999999987753

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=93.74  E-value=0.061  Score=47.36  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=19.0

Q ss_pred             EEEecCCCCChhHHHHHHHHhcC
Q 018283           50 LLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~~   72 (358)
                      |.|-|++|||||||.+++....+
T Consensus         2 IgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56889999999999999864443

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=93.72  E-value=0.05  Score=49.43  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=21.2

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .-.+.|+|++|||||||++-+..++
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          27 GEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3468999999999999999986554

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14526 adenylate kinase; Provisional

Probab=93.71  E-value=0.06  Score=48.30  Aligned_cols=24  Identities=42%  Similarity=0.494  Sum_probs=20.2

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ++|+|+|++||||||+.+.+...+
T Consensus         1 m~i~l~G~pGsGKsT~a~~La~~~   24 (211)
T PRK14526          1 MKLVFLGPPGSGKGTIAKILSNEL   24 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            379999999999999999885433

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=93.71  E-value=0.051  Score=48.64  Aligned_cols=25  Identities=28%  Similarity=0.352  Sum_probs=21.1

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .-.+.|+|++|||||||++-+..++
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          31 GEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCc
Confidence            3468999999999999999886554

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=93.69  E-value=0.053  Score=48.33  Aligned_cols=25  Identities=32%  Similarity=0.378  Sum_probs=20.8

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .-.++|+|++|||||||++-+..++
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          26 GEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3368899999999999999886554

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=93.69  E-value=0.05  Score=48.79  Aligned_cols=25  Identities=36%  Similarity=0.486  Sum_probs=20.7

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .-.+.|+|++|||||||++-+..+.
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          26 GEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCC
Confidence            3378999999999999999876544

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=93.69  E-value=0.053  Score=48.67  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=20.6

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -.+.|+|++|||||||++-+..+.
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          27 EIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368899999999999999886554

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13947 shikimate kinase; Provisional

Probab=93.68  E-value=0.062  Score=45.99  Aligned_cols=24  Identities=25%  Similarity=0.451  Sum_probs=20.3

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      +|+|+|.+||||||+.+.+....+
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg   26 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLS   26 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999854443

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=93.68  E-value=0.053  Score=48.62  Aligned_cols=25  Identities=28%  Similarity=0.333  Sum_probs=21.0

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .-.+.|+|++|||||||++-+..++
T Consensus        31 G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        31 GEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3368899999999999999886554

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=93.67  E-value=0.074  Score=45.96  Aligned_cols=28  Identities=29%  Similarity=0.406  Sum_probs=23.3

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcCCCC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQTGF   75 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~~~f   75 (358)
                      .+|+|+|..||||||+-+++..-.+-.|
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F   30 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPF   30 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence            4799999999999999999965555555

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=93.65  E-value=0.056  Score=46.89  Aligned_cols=24  Identities=42%  Similarity=0.498  Sum_probs=20.0

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -.+.|+|++|||||||+|-+..++
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          27 EIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999886443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=93.65  E-value=0.068  Score=51.88  Aligned_cols=38  Identities=29%  Similarity=0.470  Sum_probs=31.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcCC----------CCCHHHHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQT----------GFDEAELKSYISV   86 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~~----------~f~~~e~~~~~~~   86 (358)
                      =|.++|..||||||+++-+..+|.|          ..+++.++.||..
T Consensus       351 lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~L  398 (546)
T COG4615         351 LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKL  398 (546)
T ss_pred             EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHH
Confidence            3778999999999999999888863          3677788889865

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=93.64  E-value=0.04  Score=53.33  Aligned_cols=50  Identities=12%  Similarity=0.178  Sum_probs=38.9

Q ss_pred             eeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEc
Q 018283          165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAI  220 (358)
Q Consensus       165 ~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dl  220 (358)
                      +.+|+++-...|      ....-.|++.|..|+..|-.-...=-..||..++|++.
T Consensus       141 kgKtvEvGrA~F------Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisa  190 (501)
T KOG0459|consen  141 KGKTVEVGRAYF------ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISA  190 (501)
T ss_pred             ccceeeeeeEEE------EecceeEEeeccCcccccchhhccccchhhhhhhhhhh
Confidence            457777777777      66778899999999999876666556677877888764

>PF05729 NACHT: NACHT domain

Probab=93.63  E-value=0.053  Score=45.62  Aligned_cols=61  Identities=13%  Similarity=0.092  Sum_probs=34.1

Q ss_pred             hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 018283          203 KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI  266 (358)
Q Consensus       203 ~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl  266 (358)
                      .|........-+++++|  .+|+....... ..-.....++..++.....+++.+++...-...
T Consensus        72 ~~~~~~~~~~~~llilD--glDE~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~  132 (166)
T PF05729_consen   72 LLQELLEKNKRVLLILD--GLDELEEQDQS-QERQRLLDLLSQLLPQALPPGVKLIITSRPRAF  132 (166)
T ss_pred             HHHHHHHcCCceEEEEe--chHhcccchhh-hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence            56666667777888888  46655432221 111234455656655444557777776654433

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.62  E-value=0.056  Score=47.79  Aligned_cols=26  Identities=35%  Similarity=0.378  Sum_probs=21.6

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhc
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      +.-.+.|+|++|||||||++-+..++
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34478999999999999999886554

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=93.62  E-value=0.06  Score=48.30  Aligned_cols=23  Identities=26%  Similarity=0.544  Sum_probs=19.9

Q ss_pred             EEEecCCCCChhHHHHHHHHhcC
Q 018283           50 LLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~~   72 (358)
                      +.++|+.||||||+++.+..+++
T Consensus        28 ~~ivGpNGaGKSTll~~i~~~~G   50 (212)
T cd03274          28 SAIVGPNGSGKSNVIDSMLFVFG   50 (212)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            67999999999999999876654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	358
2xtz_A	354	Crystal Structure Of The G Alpha Protein Atgpa1 Fro		1e-163
3v00_C	356	Studies Of A Constitutively Active G-Alpha Subunit		5e-52
3umr_A	354	Crystal Structure Of The G202d Mutant Of Human G-Al		7e-52
1got_A	350	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		5e-51
3ffb_A	360	Crystal Structure Of A Fast Activating G Protein Mu		7e-51
1fqj_A	325	Crystal Structure Of The Heterotrimeric Complex Of		8e-51
1gp2_A	353	G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi		9e-51
2zjy_A	356	Structure Of The K349p Mutant Of Gi Alpha 1 Subunit		1e-50
2xns_A	327	Crystal Structure Of Human G Alpha I1 Bound To A De		1e-50
3onw_A	328	Structure Of A G-Alpha-I1 Mutant With Enhanced Affi		1e-50
1kjy_A	325	Crystal Structure Of Human G[alpha]i1 Bound To The		2e-50
1y3a_A	329	Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe		2e-50
2ik8_A	324	Crystal Structure Of The Heterodimeric Complex Of H		2e-50
2gtp_A	323	Crystal Structure Of The Heterodimeric Complex Of H		2e-50
4g5q_A	330	Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330		2e-50
3ums_A	354	Crystal Structure Of The G202a Mutant Of Human G-Al		2e-50
3d7m_A	354	Crystal Structure Of The G Protein Fast-Exchange Do		3e-50
1svk_A	353	Structure Of The K180p Mutant Of Gi Alpha Subunit B		3e-50
1gg2_A	353	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-50
1gil_A	353	Structure Of Active Conformations Of Gia1 And The M		8e-50
4g5r_A	330	Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330		1e-49
1as0_A	353	Gtp-Gamma-S Bound G42v Gia1 Length = 353		1e-49
4g5o_A	330	Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length		1e-49
3qe0_A	325	A Galpha-I1 P-Loop Mutation Prevents Transition To		1e-49
3qi2_A	328	A Galpha P-Loop Mutation Prevents Transition To The		2e-49
2ihb_A	323	Crystal Structure Of The Heterodimeric Complex Of H		3e-49
2g83_A	313	Structure Of Activated G-alpha-i1 Bound To A Nucleo		5e-49
1bh2_A	315	A326s Mutant Of An Inhibitory Alpha Subunit Length		1e-48
2ode_A	350	Crystal Structure Of The Heterodimeric Complex Of H		1e-48
1tnd_A	324	The 2.2 Angstroms Crystal Structure Of Transducin-A		5e-48
3c7k_A	333	Molecular Architecture Of Galphao And The Structura		1e-46
1shz_A	340	Crystal Structure Of The P115rhogef Rgrgs Domain In		6e-43
4gnk_A	353	Crystal Structure Of Galphaq In Complex With Full-l		8e-42
2bcj_Q	353	Crystal Structure Of G Protein-coupled Receptor Kin		6e-41
3ah8_A	355	Structure Of Heterotrimeric G Protein Galpha-Q Beta		6e-41
4ekc_A	347	Structure Of Human Regulator Of G Protein Signaling		1e-40
3ohm_A	327	Crystal Structure Of Activated G Alpha Q Bound To I		6e-40
1zca_A	359	Crystal Structure Of G Alpha 12 In Complex With Gdp		2e-31
1zcb_A	362	Crystal Structure Of G Alpha 13 In Complex With Gdp		6e-31
3sn6_A	380	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-30
1cul_C	380	Complex Of Gs-Alpha With The Catalytic Domains Of M		2e-30
3cx7_A	338	Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co		9e-30
1cjk_C	402	Complex Of Gs-Alpha With The Catalytic Domains Of M		4e-29
1cs4_C	394	Complex Of Gs-Alpha With The Catalytic Domains Of M		5e-29
1azs_C	402	Complex Of Gs-Alpha With The Catalytic Domains Of M		6e-29
3cx6_A	338	Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co		8e-29
4fid_A	340	Crystal Structure Of A Heterotrimeric G-Protein Sub		2e-28

>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From Arabidopsis Thaliana Length = 354

Iteration: 1
 Score =  571 bits (1472), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 282/347 (81%), Positives = 302/347 (87%), Gaps = 34/347 (9%)
Query: 46  HIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKEL 105
           HI+KLLLLGAGESGKSTIFKQIKLLFQTGFDE ELKSY+ VIHANVYQTIK+L+DG+KE 
Sbjct: 8   HIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEF 67
Query: 106 AQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQD------ 159
           AQNETDS K+++SSE+  IGEKLSEIGGRLDYPRLTK++AE IETLW DPAIQ+      
Sbjct: 68  AQNETDSAKYMLSSESIAIGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETXARGN 127
Query: 160 ----------------------------DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRL 191
                                       DVLYARVRTTGVVEIQFSPVGE+KKSGEVYRL
Sbjct: 128 ELQVPDXTKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRL 187
Query: 192 FDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 251
           FDVGGQRNERRKWIHLFEGV+AVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC
Sbjct: 188 FDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 247
Query: 252 FEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYF 311
           FEKTSFMLFLNKFDIFEKKVL VPLNVCEWF+DYQPVS+GKQEIE+AYEFVKKKFEELY+
Sbjct: 248 FEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYY 307
Query: 312 QSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
           Q+TAPDRVDRVFKIYRTTALD KLVKKTFKLVDETLRRR+L EAGLL
Sbjct: 308 QNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLLEAGLL 354

>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356

Iteration: 1
 Score =  201 bits (511), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 192/372 (51%), Gaps = 58/372 (15%)
Query: 21  AADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAEL 80
           A  S E   + E+E++++++ + +    KLLLLGAGESGKSTI KQ+K++ Q  +   E 
Sbjct: 9   AGASAEEKHSRELEKKLKEDAEKDARTVKLLLLGAGESGKSTIVKQMKIIHQDPYSLEEC 68
Query: 81  KSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRL 140
             +I++I+ N  Q+I  +      L     DS +       ++   KL  +   ++   +
Sbjct: 69  LEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSAR-------QDDARKLMHMADTIEEGTM 121
Query: 141 TKELAEDIETLWADPAIQ----------------------------------DDVLYARV 166
            KE+++ I+ LW D  IQ                                   DVL +RV
Sbjct: 122 PKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSRV 181
Query: 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQT 226
           +TTG++E QFS    +      +R+FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD  
Sbjct: 182 KTTGIIETQFSFKDLN------FRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLV 235
Query: 227 LFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQ 286
           L EDE+ NRM E+  LF+ +     F  TS +LFLNK D+FE+K+ K PL +C       
Sbjct: 236 LAEDEEMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------Y 289
Query: 287 PVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 346
           P   G    E A  ++K +F EL  +      V  ++  + T A D + VK  F  V + 
Sbjct: 290 PEYAGSNTYEEAGNYIKVQFLELNMRRD----VKEIYS-HMTCATDTQNVKFVFDAVTDI 344
Query: 347 LRRRHLFEAGLL 358
           + + +L + GL 
Sbjct: 345 IIKENLKDCGLF 356

>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score =  201 bits (510), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 124/360 (34%), Positives = 184/360 (51%), Gaps = 58/360 (16%)
Query: 33  IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVY 92
           I+R + ++ +      KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  
Sbjct: 19  IDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTI 78
Query: 93  QTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW 152
           Q+I  +      L  +  DS +        +   +L  + G  +   +T ELA  I+ LW
Sbjct: 79  QSIIAIIRAMGRLKIDFGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLW 131
Query: 153 ADPAIQ----------------------------------DDVLYARVRTTGVVEIQFSP 178
            D  +Q                                   DVL  RV+TTG+VE  F+ 
Sbjct: 132 KDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTF 191
Query: 179 VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 238
              H      +++FDV GQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E
Sbjct: 192 KDLH------FKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 245
Query: 239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA 298
           + +LFD +    CF  TS +LFLNK D+FE+K+ K PL +C       P   G    E A
Sbjct: 246 SMKLFDSICNNKCFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEA 299
Query: 299 YEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
             +++ +FE+L  +    +        + T A D K V+  F  V + + + +L + GL 
Sbjct: 300 AAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 354

>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 350

Iteration: 1
 Score =  198 bits (503), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 127/373 (34%), Positives = 188/373 (50%), Gaps = 58/373 (15%)
Query: 20  NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
            A  S E   + E+E++++++ + +    KLLLLGAGESGKSTI KQ K++ Q G+   E
Sbjct: 2   GAGASAEEKHSRELEKKLKEDAEKDARTVKLLLLGAGESGKSTIVKQXKIIHQDGYSLEE 61
Query: 80  LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
              +I++I+ N  Q+I  +      L     DS +       ++   KL      ++   
Sbjct: 62  CLEFIAIIYGNTLQSILAIVRAXTTLNIQYGDSAR-------QDDARKLXHXADTIEEGT 114
Query: 140 LTKELAEDIETLWADPAIQ----------------------------------DDVLYAR 165
             KE ++ I+ LW D  IQ                                   DVL +R
Sbjct: 115 XPKEXSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSR 174
Query: 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 225
           V+TTG++E QFS    +      +R FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD 
Sbjct: 175 VKTTGIIETQFSFKDLN------FRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 228
Query: 226 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 285
            L EDE+ NR  E+ +LFD +     F  TS +LFLNK D+FE+K+ K PL +C      
Sbjct: 229 VLAEDEEXNRXHESXKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------ 282
Query: 286 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 345
            P   G    E A  ++K +F EL  +      V  ++  + T A D + VK  F  V +
Sbjct: 283 YPEYAGSNTYEEAGNYIKVQFLELNXRRD----VKEIYS-HXTCATDTQNVKFVFDAVTD 337
Query: 346 TLRRRHLFEAGLL 358
            + + +L + GL 
Sbjct: 338 IIIKENLKDCGLF 350

>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325

Iteration: 1
 Score =  197 bits (501), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 179/344 (52%), Gaps = 58/344 (16%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ Q G+   E   +I++I+ N  Q+I  +      L   
Sbjct: 6   KLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQ 65
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
             DS +       ++   KL  +   ++   + KE+++ I+ LW D  IQ          
Sbjct: 66  YGDSAR-------QDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQ 118
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
                                    DVL +RV+TTG++E QFS    +      +R+FDV
Sbjct: 119 LNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLN------FRMFDV 172
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F  
Sbjct: 173 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 232
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
           TS +LFLNK D+FE+K+ K PL +C       P   G    E A  ++K +F EL  +  
Sbjct: 233 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAGNYIKVQFLELNMRRD 286
Query: 315 APDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
               V  ++  + T A D + VK  F  V + + + +L + GL 
Sbjct: 287 ----VKEIYS-HMTCATDTQNVKFVFDAVTDIIIKENLKDCGLF 325

>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score =  197 bits (500), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 184/360 (51%), Gaps = 58/360 (16%)
Query: 33  IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVY 92
           I+R + ++ +      KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  
Sbjct: 18  IDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTI 77
Query: 93  QTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW 152
           Q+I  +      L  +  D+ +        +   +L  + G  +   +T ELA  I+ LW
Sbjct: 78  QSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLW 130
Query: 153 ADPAIQ----------------------------------DDVLYARVRTTGVVEIQFSP 178
            D  +Q                                   DVL  RV+TTG+VE  F+ 
Sbjct: 131 KDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTF 190
Query: 179 VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 238
              H      +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E
Sbjct: 191 KDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 244
Query: 239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA 298
           + +LFD +     F  TS +LFLNK D+FE+K+ K PL +C       P   G    E A
Sbjct: 245 SMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEA 298
Query: 299 YEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
             +++ +FE+L  +    +        + T A D K V+  F  V + + + +L + GL 
Sbjct: 299 AAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 353

>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356

Iteration: 1
 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 127/375 (33%), Positives = 191/375 (50%), Gaps = 62/375 (16%)
Query: 20  NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
           +A D     ++  I+R + ++ +      KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 8   SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 67
Query: 80  LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
            K Y +V+++N  Q+I  +      L  +  D+ +        +   +L  + G  +   
Sbjct: 68  CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 120
Query: 140 LTKELAEDIETLWADPAIQ----------------------------------DDVLYAR 165
           +T ELA  I+ LW D  +Q                                   DVL  R
Sbjct: 121 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 180
Query: 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 225
           V+TTG+VE  F+    H      +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD 
Sbjct: 181 VKTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 234
Query: 226 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 285
            L EDE+ NRM E+ +LFD +     F  TS +LFLNK D+FE+K+ K PL +C      
Sbjct: 235 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------ 288
Query: 286 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKLV 343
            P   G    E A  +++ +FE+L       ++     +IY   T A D K V+  F  V
Sbjct: 289 YPEYAGSNTYEEAAAYIQCQFEDL-------NKRKDTKEIYTHFTCATDTKNVQFVFDAV 341
Query: 344 DETLRRRHLFEAGLL 358
            + + + +L + GL 
Sbjct: 342 TDVIIKNNLPDCGLF 356

>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327

Iteration: 1
 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 179/346 (51%), Gaps = 62/346 (17%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 8   KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 67
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
             DS +        +   +L  + G  +   +T ELA  I+ LW D  +Q          
Sbjct: 68  FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 120
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
                                    DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 121 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 174
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F  
Sbjct: 175 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 234
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
           TS +LFLNK D+FE+K+ K PL +C       P   G    E A  +++ +FE+L     
Sbjct: 235 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 283
Query: 315 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
             ++     +IY   T A D K V+  F  V + + + +L + GL 
Sbjct: 284 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 327

>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328

Iteration: 1
 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 179/346 (51%), Gaps = 62/346 (17%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 9   KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 68
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
             DS +        +   +L  + G  +   +T ELA  I+ LW D  +Q          
Sbjct: 69  FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYL 121
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
                                    DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 122 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 175
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F  
Sbjct: 176 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 235
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
           TS +LFLNK D+FE+K+ K PL +C       P   G    E A  +++ +FE+L     
Sbjct: 236 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 284
Query: 315 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
             ++     +IY   T A D K V+  F  V + + + +L + GL 
Sbjct: 285 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 328

>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325

Iteration: 1
 Score =  196 bits (498), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 179/346 (51%), Gaps = 62/346 (17%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 6   KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 65
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
             DS +        +   +L  + G  +   +T ELA  I+ LW D  +Q          
Sbjct: 66  FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 118
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
                                    DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 119 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 172
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F  
Sbjct: 173 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 232
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
           TS +LFLNK D+FE+K+ K PL +C       P   G    E A  +++ +FE+L     
Sbjct: 233 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 281
Query: 315 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
             ++     +IY   T A D K V+  F  V + + + +L + GL 
Sbjct: 282 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 325

>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329

Iteration: 1
 Score =  196 bits (498), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 179/346 (51%), Gaps = 62/346 (17%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 10  KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 69
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
             DS +        +   +L  + G  +   +T ELA  I+ LW D  +Q          
Sbjct: 70  FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 122
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
                                    DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 123 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 176
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F  
Sbjct: 177 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 236
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
           TS +LFLNK D+FE+K+ K PL +C       P   G    E A  +++ +FE+L     
Sbjct: 237 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 285
Query: 315 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
             ++     +IY   T A D K V+  F  V + + + +L + GL 
Sbjct: 286 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 329

>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324

Iteration: 1
 Score =  196 bits (498), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 179/346 (51%), Gaps = 62/346 (17%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 5   KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 64
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
             DS +        +   +L  + G  +   +T ELA  I+ LW D  +Q          
Sbjct: 65  FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 117
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
                                    DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 118 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 171
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F  
Sbjct: 172 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 231
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
           TS +LFLNK D+FE+K+ K PL +C       P   G    E A  +++ +FE+L     
Sbjct: 232 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 280
Query: 315 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
             ++     +IY   T A D K V+  F  V + + + +L + GL 
Sbjct: 281 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 324

>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323

Iteration: 1
 Score =  196 bits (498), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 179/346 (51%), Gaps = 62/346 (17%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 4   KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 63
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
             DS +        +   +L  + G  +   +T ELA  I+ LW D  +Q          
Sbjct: 64  FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 116
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
                                    DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 117 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 170
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F  
Sbjct: 171 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 230
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
           TS +LFLNK D+FE+K+ K PL +C       P   G    E A  +++ +FE+L     
Sbjct: 231 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 279
Query: 315 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
             ++     +IY   T A D K V+  F  V + + + +L + GL 
Sbjct: 280 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 323

>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330

Iteration: 1
 Score =  196 bits (498), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/357 (35%), Positives = 184/357 (51%), Gaps = 63/357 (17%)
Query: 38  EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
           E   KA + + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  
Sbjct: 1   EDGEKAAREV-KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIA 59
Query: 98  LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAI 157
           +      L  +  DS +        +   +L  + G  +   +T ELA  I+ LW D  +
Sbjct: 60  IIRAMGRLKIDFGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGV 112
Query: 158 Q----------------------------------DDVLYARVRTTGVVEIQFSPVGEHK 183
           Q                                   DVL  RV+TTG+VE  F+    H 
Sbjct: 113 QACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH- 171
Query: 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 243
                +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LF
Sbjct: 172 -----FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 244 DWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVK 303
           D +     F  TS +LFLNK D+FE+K+ K PL +C       P   G    E A  +++
Sbjct: 227 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQ 280
Query: 304 KKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
            +FE+L       ++     +IY   T A D K V+  F  V + + + +L + GL 
Sbjct: 281 CQFEDL-------NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 330

>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 183/360 (50%), Gaps = 58/360 (16%)
Query: 33  IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVY 92
           I+R + ++ +      KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  
Sbjct: 19  IDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTI 78
Query: 93  QTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW 152
           Q+I  +      L  +  DS +        +   +L  + G  +   +T ELA  I+ LW
Sbjct: 79  QSIIAIIRAMGRLKIDFGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLW 131
Query: 153 ADPAIQ----------------------------------DDVLYARVRTTGVVEIQFSP 178
            D  +Q                                   DVL  RV+TTG+VE  F+ 
Sbjct: 132 KDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTF 191
Query: 179 VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 238
              H      +++FDV GQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E
Sbjct: 192 KDLH------FKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 245
Query: 239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA 298
           + +LFD +     F  TS +LFLNK D+FE+K+ K PL +C       P   G    E A
Sbjct: 246 SMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEA 299
Query: 299 YEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
             +++ +FE+L  +    +        + T A D K V+  F  V + + + +L + GL 
Sbjct: 300 AAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 354

>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354

Iteration: 1
 Score =  195 bits (496), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 182/360 (50%), Gaps = 58/360 (16%)
Query: 33  IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVY 92
           I+R + ++ +      KLLLLGAGESGKSTI KQ+K+  + G+ E E K Y +V+++N  
Sbjct: 19  IDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKICHEAGYSEEECKQYKAVVYSNTI 78
Query: 93  QTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW 152
           Q+I  +      L  +  D+ +        +   +L  + G  +   +T ELA  I+ LW
Sbjct: 79  QSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLW 131
Query: 153 ADPAIQ----------------------------------DDVLYARVRTTGVVEIQFSP 178
            D  +Q                                   DVL  RV+TTG+VE  F+ 
Sbjct: 132 KDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTF 191
Query: 179 VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 238
              H      +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E
Sbjct: 192 KDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 245
Query: 239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA 298
           + +LFD +     F  TS +LFLNK D+FE+K+ K PL +C       P   G    E A
Sbjct: 246 SMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEA 299
Query: 299 YEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
             +++ +FE+L  +    +        + T A D K V   F  V + + + +L + GL 
Sbjct: 300 AAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVCFVFDAVTDVIIKNNLKDCGLF 354

>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353

Iteration: 1
 Score =  195 bits (496), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 185/362 (51%), Gaps = 62/362 (17%)
Query: 33  IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVY 92
           I+R + ++ +      KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  
Sbjct: 18  IDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTI 77
Query: 93  QTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW 152
           Q+I  +      L  +  D+ +        +   +L  + G  +   +T ELA  I+ LW
Sbjct: 78  QSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLW 130
Query: 153 ADPAIQ----------------------------------DDVLYARVRTTGVVEIQFSP 178
            D  +Q                                   DVL  RV TTG+VE  F+ 
Sbjct: 131 KDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVPTTGIVETHFTF 190
Query: 179 VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 238
              H      +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E
Sbjct: 191 KDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 244
Query: 239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA 298
           + +LFD +     F  TS +LFLNK D+FE+K+ K PL +C       P   G    E A
Sbjct: 245 SMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEA 298
Query: 299 YEFVKKKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAG 356
             +++ +FE+L       ++     +IY   T A D K V+  F  V + + + +L + G
Sbjct: 299 AAYIQCQFEDL-------NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCG 351
Query: 357 LL 358
           L 
Sbjct: 352 LF 353

>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score =  194 bits (494), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 183/360 (50%), Gaps = 58/360 (16%)
Query: 33  IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVY 92
           I+R + ++ +      KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  
Sbjct: 18  IDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTI 77
Query: 93  QTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW 152
           Q+I  +      L  +  D+ +        +   +L  + G  +   +T ELA  I+ LW
Sbjct: 78  QSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLW 130
Query: 153 ADPAIQ----------------------------------DDVLYARVRTTGVVEIQFSP 178
            D  +Q                                   DVL  RV+TTG+VE  F+ 
Sbjct: 131 KDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTF 190
Query: 179 VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 238
              H      +++FDVG QR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E
Sbjct: 191 KDLH------FKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 244
Query: 239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA 298
           + +LFD +     F  TS +LFLNK D+FE+K+ K PL +C       P   G    E A
Sbjct: 245 SMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEA 298
Query: 299 YEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
             +++ +FE+L  +    +        + T A D K V+  F  V + + + +L + GL 
Sbjct: 299 AAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 353

>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The Mechanism Of Gtp Hydrolysis Length = 353

Iteration: 1
 Score =  194 bits (492), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 183/360 (50%), Gaps = 58/360 (16%)
Query: 33  IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVY 92
           I+R + ++ +      KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  
Sbjct: 18  IDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTI 77
Query: 93  QTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW 152
           Q+I  +      L  +  D+ +        +   +L  + G  +   +T ELA  I+ LW
Sbjct: 78  QSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLW 130
Query: 153 ADPAIQ----------------------------------DDVLYARVRTTGVVEIQFSP 178
            D  +Q                                   DVL  RV+TTG+VE  F+ 
Sbjct: 131 KDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTF 190
Query: 179 VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 238
              H      +++FDVGG R+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E
Sbjct: 191 KDLH------FKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 244
Query: 239 TKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA 298
           + +LFD +     F  TS +LFLNK D+FE+K+ K PL +C       P   G    E A
Sbjct: 245 SMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEA 298
Query: 299 YEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
             +++ +FE+L  +    +        + T A D K V+  F  V + + + +L + GL 
Sbjct: 299 AAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 353

>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330

Iteration: 1
 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/356 (35%), Positives = 185/356 (51%), Gaps = 63/356 (17%)
Query: 38  EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
           E   KA K + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y  V+++N  Q+I  
Sbjct: 1   EDGEKAAKEV-KLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIA 59
Query: 98  LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAI 157
           +      L  +  ++ +        +   +L  + G  +   +T ELA  I+ LW D  +
Sbjct: 60  IIRAMGRLKIDFGEAAR-------ADDARQLFVLAGSAEEGVMTPELAGVIKRLWRDGGV 112
Query: 158 Q----------------------------------DDVLYARVRTTGVVEIQFSPVGEHK 183
           Q                                   DVL  RV+TTG+VE  F+    + 
Sbjct: 113 QACFSRSREYQLNDSASYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLY- 171
Query: 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 243
                +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LF
Sbjct: 172 -----FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 244 DWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVK 303
           D +     F +TS +LFLNK D+FE+K+ + PL +C       P  TG    E A  +++
Sbjct: 227 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC------YPEYTGSNTYEEAAAYIQ 280
Query: 304 KKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGL 357
            +FE+L       +R     +IY   T A D K V+  F  V + + + +L E GL
Sbjct: 281 CQFEDL-------NRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGL 329

>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353

Iteration: 1
 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 188/373 (50%), Gaps = 58/373 (15%)
Query: 20  NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
           +A D     ++  I+R + ++ +      KLLLLGA ESGKSTI KQ+K++ + G+ E E
Sbjct: 5   SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAVESGKSTIVKQMKIIHEAGYSEEE 64
Query: 80  LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
            K Y +V+++N  Q+I  +      L  +  D+ +        +   +L  + G  +   
Sbjct: 65  CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 117
Query: 140 LTKELAEDIETLWADPAIQ----------------------------------DDVLYAR 165
           +T ELA  I+ LW D  +Q                                   DVL  R
Sbjct: 118 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 177
Query: 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 225
           V+TTG+VE  F+    H      +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD 
Sbjct: 178 VKTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 226 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 285
            L EDE+ NRM E+ +LFD +     F  TS +LFLNK D+FE+K+ K PL +C      
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------ 285
Query: 286 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 345
            P   G    E A  +++ +FE+L  +    +        + T A D K V+  F  V +
Sbjct: 286 YPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTD 340
Query: 346 TLRRRHLFEAGLL 358
            + + +L + GL 
Sbjct: 341 VIIKNNLKDCGLF 353

>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330

Iteration: 1
 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/356 (35%), Positives = 185/356 (51%), Gaps = 63/356 (17%)
Query: 38  EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
           E   KA K + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y  V+++N  Q+I  
Sbjct: 1   EDGEKAAKEV-KLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIA 59
Query: 98  LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAI 157
           +      L  +  ++ +        +   +L  + G  +   +T ELA  I+ LW D  +
Sbjct: 60  IIRAMGRLKIDFGEAAR-------ADDARQLFVLAGSAEEGVMTPELAGVIKRLWRDGGV 112
Query: 158 Q----------------------------------DDVLYARVRTTGVVEIQFSPVGEHK 183
           Q                                   DVL  RV+TTG+VE  F+    + 
Sbjct: 113 QACFSRSREYLLNDSASYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLY- 171
Query: 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 243
                +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LF
Sbjct: 172 -----FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 244 DWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVK 303
           D +     F +TS +LFLNK D+FE+K+ + PL +C       P  TG    E A  +++
Sbjct: 227 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC------YPEYTGSNTYEEAAAYIQ 280
Query: 304 KKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGL 357
            +FE+L       +R     +IY   T A D K V+  F  V + + + +L E GL
Sbjct: 281 CQFEDL-------NRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGL 329

>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325

Iteration: 1
 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 178/346 (51%), Gaps = 62/346 (17%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGA ESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 6   KLLLLGARESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 65
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
             DS +        +   +L  + G  +   +T ELA  I+ LW D  +Q          
Sbjct: 66  FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 118
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
                                    DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 119 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 172
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F  
Sbjct: 173 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 232
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
           TS +LFLNK D+FE+K+ K PL +C       P   G    E A  +++ +FE+L     
Sbjct: 233 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 281
Query: 315 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
             ++     +IY   T A D K V+  F  V + + + +L + GL 
Sbjct: 282 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 325

>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328

Iteration: 1
 Score =  192 bits (489), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 178/346 (51%), Gaps = 62/346 (17%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGA ESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 9   KLLLLGARESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 68
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
             DS +        +   +L  + G  +   +T ELA  I+ LW D  +Q          
Sbjct: 69  FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 121
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
                                    DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 122 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 175
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F  
Sbjct: 176 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 235
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
           TS +LFLNK D+FE+K+ K PL +C       P   G    E A  +++ +FE+L     
Sbjct: 236 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 284
Query: 315 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
             ++     +IY   T A D K V+  F  V + + + +L + GL 
Sbjct: 285 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 328

>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 323

Iteration: 1
 Score =  192 bits (487), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 180/345 (52%), Gaps = 62/345 (17%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y  V+++N  Q+I  +      L  +
Sbjct: 4   KLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKID 63
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
             ++ +        +   +L  + G  +   +T ELA  I+ LW D  +Q          
Sbjct: 64  FGEAAR-------ADDARQLFVLAGSAEEGVMTPELAGVIKRLWRDGGVQACFSRSREYQ 116
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
                                    DVL  RV+TTG+VE  F+    +      +++FDV
Sbjct: 117 LNDSASYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLY------FKMFDV 170
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F +
Sbjct: 171 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTE 230
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
           TS +LFLNK D+FE+K+ + PL +C       P  TG    E A  +++ +FE+L     
Sbjct: 231 TSIILFLNKKDLFEEKIKRSPLTIC------YPEYTGSNTYEEAAAYIQCQFEDL----- 279
Query: 315 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGL 357
             +R     +IY   T A D K V+  F  V + + + +L E GL
Sbjct: 280 --NRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGL 322

>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313

Iteration: 1
 Score =  191 bits (485), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 112/295 (37%), Positives = 158/295 (53%), Gaps = 53/295 (17%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 3   KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 62
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
             DS +        +   +L  + G  +   +T ELA  I+ LW D  +Q          
Sbjct: 63  FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 115
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
                                    DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 116 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 169
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F  
Sbjct: 170 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 229
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEEL 309
           TS +LFLNK D+FE+K+ K PL +C       P   G    E A  +++ +FE+L
Sbjct: 230 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL 278

>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315

Iteration: 1
 Score =  190 bits (483), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 111/295 (37%), Positives = 158/295 (53%), Gaps = 53/295 (17%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 4   KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 63
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
             D+ +        +   +L  + G  +   +T ELA  I+ LW D  +Q          
Sbjct: 64  FGDAAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 116
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
                                    DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 117 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 170
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F  
Sbjct: 171 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 230
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEEL 309
           TS +LFLNK D+FE+K+ K PL +C       P   G    E A  +++ +FE+L
Sbjct: 231 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL 279

>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350

Iteration: 1
 Score =  190 bits (482), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/373 (34%), Positives = 194/373 (52%), Gaps = 64/373 (17%)
Query: 20  NAADSEENAQTAEIERRIEQET-KAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEA 78
           +A D     ++  I+R + ++  KA K + KLLLLGAGESGKSTI KQ+K++ + G+ E 
Sbjct: 5   SAEDKAAVERSKMIDRNLREDGEKAAKEV-KLLLLGAGESGKSTIVKQMKIIHEDGYSED 63
Query: 79  ELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYP 138
           E K Y  V+++N  Q+I  +      L  +  ++ +        +   +L  + G  +  
Sbjct: 64  ECKQYKVVVYSNTIQSIIAIIRAMGRLKIDFGEAAR-------ADDARQLFVLAGSAEEG 116
Query: 139 RLTKELAEDIETLWADPAIQ----------------------------------DDVLYA 164
            +T ELA  I+ LW D  +Q                                   DVL  
Sbjct: 117 VMTPELAGVIKRLWRDGGVQACFSRSREYQLNDSASYYLNDLDRISQSNYIPTQQDVLRT 176
Query: 165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYD 224
           RV+TTG+VE  F+    +      +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 177 RVKTTGIVETHFTFKDLY------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 230
Query: 225 QTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKD 284
             L EDE+ NRM E+ +LFD +     F +TS +LFLNK D+FE+K+ + PL +C     
Sbjct: 231 LVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC----- 285
Query: 285 YQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKL 342
             P  TG    E A  +++ +FE+L       +R     +IY   T A D K V+  F  
Sbjct: 286 -YPEYTGSNTYEEAAAYIQCQFEDL-------NRRKDTKEIYTHFTCATDTKNVQFVFDA 337
Query: 343 VDETLRRRHLFEA 355
           V + + + +L E+
Sbjct: 338 VTDVIIKNNLKES 350

>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha Complexed With Gtp Gamma S Length = 324

Iteration: 1
 Score =  187 bits (476), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 120/344 (34%), Positives = 178/344 (51%), Gaps = 58/344 (16%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ Q G+   E   +I++I+ N  Q+I  +      L   
Sbjct: 5   KLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQ 64
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ---------- 158
             DS +       ++   KL  +   ++   + KE+++ I+ LW D  IQ          
Sbjct: 65  YGDSAR-------QDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQ 117
Query: 159 ------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 194
                                    DVL +RV+TTG++E QFS    +      +R+FDV
Sbjct: 118 LNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLN------FRMFDV 171
Query: 195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 254
           GGQR+ER+KWIH FEGV+ +IF AA+S YD  L ED++ NRM E+  LF+ +     F  
Sbjct: 172 GGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFAT 231
Query: 255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 314
           TS +LFLNK D+F +K+ K  L++C  F DY     G    E+A  ++K +F EL  +  
Sbjct: 232 TSIVLFLNKKDVFSEKIKKAHLSIC--FPDYN----GPNTYEDAGNYIKVQFLELNMRRD 285
Query: 315 APDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
               V  ++  + T A D + VK  F  V + + + +L + GL 
Sbjct: 286 ----VKEIYS-HMTCATDTQNVKFVFDAVTDIIIKENLKDCGLF 324

>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333

Iteration: 1
 Score =  183 bits (464), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 172/344 (50%), Gaps = 60/344 (17%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + GF   ++K Y  V+++N  Q++  +      L   
Sbjct: 14  KLLLLGAGESGKSTIVKQMKIIHEDGFSGEDVKQYKPVVYSNTIQSLAAIVRAMDTLGVE 73
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRL-DYPRLTKELAEDIETLWADPAIQD-------- 159
             D        E K   + + ++  R+ D    + EL   +  LW D  IQ+        
Sbjct: 74  YGDK-------ERKTDSKMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQECFNRSREY 126
Query: 160 --------------------------DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFD 193
                                     D+L  RV+TTG+VE  F+    H      +RLFD
Sbjct: 127 QLNDSAKYYLDSLDRIGAGDYQPTEQDILRTRVKTTGIVETHFTFKNLH------FRLFD 180
Query: 194 VGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 253
           VGGQR+ER+KWIH FE V+A+IFC A+S YDQ L EDE  NRM E+  LFD +     F 
Sbjct: 181 VGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNKFFI 240
Query: 254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQS 313
            TS +LFLNK D+F +K+ K PL +C  F +Y     G    E+A  +++ +FE    ++
Sbjct: 241 DTSIILFLNKKDLFGEKIKKSPLTIC--FPEYP----GSNTYEDAAAYIQTQFES---KN 291
Query: 314 TAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGL 357
            +P   ++    + T A D   ++  F  V + +   +L   GL
Sbjct: 292 RSP---NKEIYCHMTCATDTNNIQVVFDAVTDIIIANNLRGCGL 332

>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340

Iteration: 1
 Score =  171 bits (433), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 119/364 (32%), Positives = 176/364 (48%), Gaps = 70/364 (19%)
Query: 38  EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
           E   KA + + KLLLLGAGESGKST  KQ++++    FD+   + +   I++NV + ++V
Sbjct: 4   EDGEKAAREV-KLLLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRV 62
Query: 98  LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAED---------I 148
           L D  ++L     D+       +N+  G+KL     R   P   + + E          I
Sbjct: 63  LVDAREKLHIPWGDN-------KNQLHGDKLMAFDTRA--PMAAQGMVETRVFLQYLPAI 113
Query: 149 ETLWADPAIQD----------------------------------DVLYARVRTTGVVEI 174
             LW D  IQ+                                  D+L AR  T G+ E 
Sbjct: 114 RALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHET 173
Query: 175 QFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKN 234
            F+    H      +++FDVGGQR+ER+KW   FEGV+A+IFC A+S+YDQ L ED Q N
Sbjct: 174 HFTFKDLH------FKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTN 227
Query: 235 RMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQE 294
           RM E+ +LFD +     F  TS +LFLNK D+FE+K+ K PL +C       P   G   
Sbjct: 228 RMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNT 281
Query: 295 IENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFE 354
            E A  +++ +FE+L  +    +        + T A D K V+  F  V + + + +L +
Sbjct: 282 YEEAAAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 336
Query: 355 AGLL 358
            GL 
Sbjct: 337 CGLF 340

>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length Human Plcbeta3 Length = 353

Iteration: 1
 Score =  167 bits (423), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 120/356 (33%), Positives = 192/356 (53%), Gaps = 49/356 (13%)
Query: 32  EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANV 91
           EIER++ ++ +  +   KLLLLG GESGKST  KQ++++  +G+ + + + +  +++ N+
Sbjct: 18  EIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNI 77
Query: 92  YQTIKVL------------YDGSKELAQ--NETDSMKFVVSSENK---EIGEKLSEIGGR 134
           +  ++ +            Y+ +K  AQ   E D  K V + EN     I    ++ G +
Sbjct: 78  FTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEK-VSAFENPYVDAIKSLWNDPGIQ 136
Query: 135 LDYPRL--------TKELAEDIETLWADPA---IQDDVLYARVRTTGVVEIQFSPVGEHK 183
             Y R         TK    D++ + ADP+    Q DVL  RV TTG++E  F       
Sbjct: 137 ECYDRRREYQLSDSTKYYLNDLDRV-ADPSYLPTQQDVLRVRVPTTGIIEYPFD------ 189
Query: 184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 243
               ++R+ DVGGQR+ERRKWIH FE V++++F  A+SEYDQ L E + +NRM E+K LF
Sbjct: 190 LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALF 249
Query: 244 DWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQ-EIENAYEFV 302
             ++  P F+ +S +LFLNK D+ E+K++   L       DY P   G Q + + A EF+
Sbjct: 250 RTIITYPWFQNSSVILFLNKKDLLEEKIMYSHL------VDYFPEYDGPQRDAQAAREFI 303
Query: 303 KKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
            K F +L      PD  D++   + T A D + ++  F  V +T+ + +L E  L+
Sbjct: 304 LKMFVDL-----NPDS-DKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 353

>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 353

Iteration: 1
 Score =  164 bits (416), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 195/368 (52%), Gaps = 49/368 (13%)
Query: 20  NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
           +A D     ++  I+R + ++ +  +   KLLLLG GESGKST  KQ++++  +G+ + +
Sbjct: 6   SAEDKAAVERSKMIDRNLREDGERSRRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDED 65
Query: 80  LKSYISVIHANVYQTIKVL------------YDGSKELAQ--NETDSMKFVVSSENK--- 122
            + +  +++ N++  ++ +            Y+ +K  AQ   E D  K V + EN    
Sbjct: 66  KRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEK-VSAFENPYVD 124
Query: 123 EIGEKLSEIGGRLDYPRL--------TKELAEDIETLWADPA---IQDDVLYARVRTTGV 171
            I    ++ G +  Y R         TK    D++ + ADP+    Q DVL  RV TTG+
Sbjct: 125 AIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRV-ADPSYLPTQQDVLRVRVPTTGI 183
Query: 172 VEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDE 231
           +E  F           ++R+ DVGGQR+ERRKWIH FE V++++F  A+SEYDQ L E +
Sbjct: 184 IEYPFD------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 232 QKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTG 291
            +NRM E+K LF  ++  P F+ +S +LFLNK D+ E+K++   L       DY P   G
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHL------VDYFPEYDG 291
Query: 292 KQ-EIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRR 350
            Q + + A EF+ K F +L      PD  D++   + T A D + ++  F  V +T+ + 
Sbjct: 292 PQRDAQAAREFILKMFVDL-----NPDS-DKIIYSHFTCATDTENIRFVFAAVKDTILQL 345
Query: 351 HLFEAGLL 358
           +L E  L+
Sbjct: 346 NLKEYNLV 353

>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In Complex With An Inhibitor Ym-254890 Length = 355

Iteration: 1
 Score =  164 bits (416), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 195/368 (52%), Gaps = 49/368 (13%)
Query: 20  NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
           +A D     ++  I+R + ++ +  +   KLLLLG GESGKST  KQ++++  +G+ + +
Sbjct: 8   SAEDKAAVERSKMIDRNLREDGERSRRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDED 67
Query: 80  LKSYISVIHANVYQTIKVL------------YDGSKELAQ--NETDSMKFVVSSENK--- 122
            + +  +++ N++  ++ +            Y+ +K  AQ   E D  K V + EN    
Sbjct: 68  KRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEK-VSAFENPYVD 126
Query: 123 EIGEKLSEIGGRLDYPRL--------TKELAEDIETLWADPA---IQDDVLYARVRTTGV 171
            I    ++ G +  Y R         TK    D++ + ADP+    Q DVL  RV TTG+
Sbjct: 127 AIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRV-ADPSYLPTQQDVLRVRVPTTGI 185
Query: 172 VEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDE 231
           +E  F           ++R+ DVGGQR+ERRKWIH FE V++++F  A+SEYDQ L E +
Sbjct: 186 IEYPFD------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 239
Query: 232 QKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTG 291
            +NRM E+K LF  ++  P F+ +S +LFLNK D+ E+K++   L       DY P   G
Sbjct: 240 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHL------VDYFPEYDG 293
Query: 292 KQ-EIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRR 350
            Q + + A EF+ K F +L      PD  D++   + T A D + ++  F  V +T+ + 
Sbjct: 294 PQRDAQAAREFILKMFVDL-----NPDS-DKIIYSHFTCATDTENIRFVFAAVKDTILQL 347
Query: 351 HLFEAGLL 358
           +L E  L+
Sbjct: 348 NLKEYNLV 355

>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2 (rgs2) In Complex With Murine Galpha-q(r183c) Length = 347

Iteration: 1
 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 183/367 (49%), Gaps = 71/367 (19%)
Query: 32  EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANV 91
           EIER++ ++ +  +   KLLLLG GESGKST  KQ++++  +G+ + + + +  +++ N+
Sbjct: 12  EIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNI 71
Query: 92  YQTIKVLYDGSKELAQNETDSMKFVVSSE-NKEIGEKLSEIG----GRLDYPRLTKELAE 146
           +  ++ +            D++K     E NK   + + E+        D P        
Sbjct: 72  FTAMQAMIRA--------MDTLKIPYKYEHNKAHAQLVREVDVEKVSAFDVPDYAA---- 119
Query: 147 DIETLWADPAIQD----------------------------------DVLYARVRTTGVV 172
            I++LW DP IQ+                                  DVL   V TTG++
Sbjct: 120 -IKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVCVPTTGII 178
Query: 173 EIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQ 232
           E  F           ++R+ DVGGQR+ERRKWIH FE V++++F  A+SEYDQ L E + 
Sbjct: 179 EYPFD------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 232
Query: 233 KNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGK 292
           +NRM E+K LF  ++  P F+ +S +LFLNK D+ E+K++   L       DY P   G 
Sbjct: 233 ENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHL------VDYFPEYDGP 286
Query: 293 Q-EIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRH 351
           Q + + A EF+ K F +L      PD  D++   + T A D + ++  F  V +T+ + +
Sbjct: 287 QRDAQAAREFILKMFVDL-----NPDS-DKIIYSHFTCATDTENIRFVFAAVKDTILQLN 340
Query: 352 LFEAGLL 358
           L E  L+
Sbjct: 341 LKEYNLV 347

>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its Effector Phospholipase C Beta 3 Length = 327

Iteration: 1
 Score =  161 bits (407), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 116/339 (34%), Positives = 182/339 (53%), Gaps = 49/339 (14%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVL---------- 98
           KLLLLG GESGKST  KQ++++  +G+ + + + +  +++ N++  ++ +          
Sbjct: 9   KLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIP 68
Query: 99  --YDGSKELAQ--NETDSMKFVVSSENK---EIGEKLSEIGGRLDYPRL--------TKE 143
             Y+ +K  AQ   E D  K V + EN     I    ++ G +  Y R         TK 
Sbjct: 69  YKYEHNKAHAQLVREVDVEK-VSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKY 127
Query: 144 LAEDIETLWADPA---IQDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNE 200
              D++ + ADP+    Q DVL  RV TTG++E  F           ++R+ DVGGQR+E
Sbjct: 128 YLNDLDRV-ADPSYLPTQQDVLRVRVPTTGIIEYPFD------LQSVIFRMVDVGGQRSE 180
Query: 201 RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLF 260
           RRKWIH FE V++++F  A+SEYDQ L E + +NRM E+K LF  ++  P F+ +S +LF
Sbjct: 181 RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF 240
Query: 261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQ-EIENAYEFVKKKFEELYFQSTAPDRV 319
           LNK D+ E+K++   L       DY P   G Q + + A EF+ K F +L      PD  
Sbjct: 241 LNKKDLLEEKIMYSHL------VDYFPEYDGPQRDAQAAREFILKMFVDL-----NPDS- 288
Query: 320 DRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
           D++   + T A D + ++  F  V +T+ + +L E  L+
Sbjct: 289 DKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 327

>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+ And Alf4- Length = 359

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 183/375 (48%), Gaps = 69/375 (18%)
Query: 20  NAADSEENAQTAEIERRIEQ--ETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDE 77
           +A D     ++  I+R + +  E +A + + K+LLLGAGESGKST  KQ++++    FD+
Sbjct: 6   SAEDKAAVERSKMIDRNLREDGERRAVRRLVKILLLGAGESGKSTFLKQMRIIHGREFDQ 65
Query: 78  AELKSYISVIHANVYQTIKVLYDGSKEL------AQNETDSMKFVVSSENKEIGEKLSEI 131
             L  +   I  N+ +  +VL D   +L      ++NE   M F+++ ENK  G  +   
Sbjct: 66  KALLEFRDTIFDNILKGSRVLVDARDKLGIPWQHSENEKHGM-FLMAFENKA-GLPVEPA 123
Query: 132 GGRLDYPRLTKELAEDIETLWADPAIQD-------------------------------- 159
             +L  P L+         LW D  I++                                
Sbjct: 124 TFQLYVPALS--------ALWRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQLNYFPS 175
Query: 160 --DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFC 217
             D+L AR  T G+VE  F      KK    +++ DVGGQR++R+KW   F+G+++++F 
Sbjct: 176 KQDILLARKATKGIVEHDFVI----KKIP--FKMVDVGGQRSQRQKWFQCFDGITSILFM 229
Query: 218 AAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLN 277
            + SEYDQ L ED + NR++E+  +F+ ++    F   S +LFLNK D+  +KV  V  +
Sbjct: 230 VSSSEYDQVLMEDRRTNRLVESMNIFETIVNNKLFFNVSIILFLNKMDLLVEKVKSV--S 287
Query: 278 VCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK 337
           + + F D++        +E+   ++ + F+      + P     +F  + TTA+D + ++
Sbjct: 288 IKKHFPDFK---GDPHRLEDVQRYLVQCFDRKRRNRSKP-----LFHHF-TTAIDTENIR 338
Query: 338 KTFKLVDETLRRRHL 352
             F  V +T+ + +L
Sbjct: 339 FVFHAVKDTILQENL 353

>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp Length = 362

Iteration: 1
 Score =  131 bits (329), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 176/371 (47%), Gaps = 68/371 (18%)
Query: 20  NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
           +A D     ++  I+R + ++ +    + K+LLLGAGESGKST  KQ++++    FD+  
Sbjct: 6   SAEDKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRA 65
Query: 80  LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
            + +   I++NV + ++VL D  ++L     D+       +N+  G+KL     R   P 
Sbjct: 66  REEFRPTIYSNVIKGMRVLVDAREKLHIPWGDN-------KNQLHGDKLMAFDTR--APM 116
Query: 140 LTKELAED---------IETLWADPAIQD------------------------------- 159
             + + E          I  LW D  IQ+                               
Sbjct: 117 AAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIP 176
Query: 160 ---DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIF 216
              D+L AR  T G+ E  F      +     +++ DVGGQR+ER++W   F+ V++++F
Sbjct: 177 SQQDILLARRPTKGIHEYDF------EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILF 230
Query: 217 CAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPL 276
             + SE+DQ L ED Q NR+ E+  +F+ ++    F   S +LFLNK D+ E+KV  V  
Sbjct: 231 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVV-- 288
Query: 277 NVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLV 336
           ++ ++F +++      ++++        KF    F+    D+  R    + TTA++ + +
Sbjct: 289 SIKDYFLEFEGDPHCLRDVQ--------KFLVECFRGKRRDQQQRPLYHHFTTAINTENI 340
Query: 337 KKTFKLVDETL 347
           +  F+ V +T+
Sbjct: 341 RLVFRDVKDTI 351

>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 380

Iteration: 1
 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 179/399 (44%), Gaps = 68/399 (17%)
Query: 9   MGLLCSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFK 65
           MG  C  N +     +EE AQ     +IE++++++ +  +   +LLLLGAGESGKSTI K
Sbjct: 1   MG--CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVK 58
Query: 66  QIKLLFQTGFD-EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEI 124
           Q+++L   GF+ ++E  + +  I  N+ + I+ +      L           V   N E 
Sbjct: 59  QMRILHVNGFNGDSEKATKVQDIKNNLKEAIETIVAAMSNLVP--------PVELANPEN 110
Query: 125 GEKLSEIGGRLDYPRL--TKELAEDIETLWADPAI------------------------- 157
             ++  I   ++ P      E  E  + LW D  +                         
Sbjct: 111 QFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDV 170
Query: 158 --QDD-------VLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLF 208
             QDD       +L  RV T+G+ E +F      +     + +FDVGGQR+ERRKWI  F
Sbjct: 171 IKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQCF 224
Query: 209 EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 268
             V+A+IF  A S Y+  + ED Q NR+ E   LF  +         S +LFLNK D+  
Sbjct: 225 NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 284
Query: 269 KKVLKVPLNVCEWFKDYQPVSTGKQ---------EIENAYEFVKKKFEELYFQSTAPDRV 319
           +KVL     + ++F ++   +T +           +  A  F++ +F  +   STA    
Sbjct: 285 EKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRI---STASGDG 341
Query: 320 DRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
                 + T A+D + +++ F    + ++R HL +  LL
Sbjct: 342 RHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 380

>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg Length = 380

Iteration: 1
 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 176/399 (44%), Gaps = 68/399 (17%)
Query: 9   MGLLCSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFK 65
           MG  C  N +     +EE AQ     +IE++++++ +  +   +LLLLGAGESGKSTI K
Sbjct: 1   MG--CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVK 58
Query: 66  QIKLLFQTGFD-EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEI 124
           Q+++L   GF+ + E  + +  I  N+ + I+ +      L           V   N E 
Sbjct: 59  QMRILHVNGFNGDGEKATKVQDIKNNLKEAIETIVAAMSNLVP--------PVELANPEN 110
Query: 125 GEKLSEIGGRLDYPRL--TKELAEDIETLWADPAI------------------------- 157
             ++  I   ++ P      E  E  + LW D  +                         
Sbjct: 111 QFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDV 170
Query: 158 --QDD-------VLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLF 208
             QDD       +L  RV T+G+ E +F      +     + +FDVGGQR+ERRKWI  F
Sbjct: 171 IKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQCF 224
Query: 209 EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 268
             V+A+IF  A S Y+  + ED Q NR+ E   LF  +         S +LFLNK D+  
Sbjct: 225 NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 284
Query: 269 KKVLKVPLNVCEWF---------KDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRV 319
           +KVL     + ++F         +D  P       +  A  F++ +F  +   STA    
Sbjct: 285 EKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRI---STASGDG 341
Query: 320 DRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
                 + T A+D + +++ F    + ++R HL +  LL
Sbjct: 342 RHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 380

>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp-Alf4 Length = 338

Iteration: 1
 Score =  127 bits (319), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 165/346 (47%), Gaps = 68/346 (19%)
Query: 45  KHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKE 104
           K + K+LLLGAGESGKST  KQ++++    FD+   + +   I++NV + ++VL D  ++
Sbjct: 7   KRLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREK 66
Query: 105 LAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAED---------IETLWADP 155
           L     D+       +N+  G+KL     R   P   + + E          I  LW D 
Sbjct: 67  LHIPWGDN-------KNQLHGDKLMAFDTRA--PMAAQGMVETRVFLQYLPAIRALWEDS 117
Query: 156 AIQD----------------------------------DVLYARVRTTGVVEIQFSPVGE 181
            IQ+                                  D+L AR  T G+ E  F     
Sbjct: 118 GIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDF----- 172
Query: 182 HKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE 241
            +     +++ DVGGQR+ER++W   F+ V++++F  + SE+DQ L ED Q NR+ E+  
Sbjct: 173 -EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 231
Query: 242 LFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEF 301
           +F+ ++    F   S +LFLNK D+ E+KV  V  ++ ++F +++      ++++     
Sbjct: 232 IFETIVNNRVFSNVSIILFLNKTDLLEEKVQVV--SIKDYFLEFEGDPHCLRDVQ----- 284
Query: 302 VKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 347
              KF    F+    D+  R    + TTA++ + ++  F+ V +T+
Sbjct: 285 ---KFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 327

>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With Adenosine 5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn Length = 402

Iteration: 1
 Score =  125 bits (314), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 178/408 (43%), Gaps = 72/408 (17%)
Query: 9   MGLLCSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFK 65
           MG  C  N +     +EE AQ     +IE++++++ +  +   +LLLLGAGESGKSTI K
Sbjct: 1   MG--CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVK 58
Query: 66  QIKLLFQTGFD-------EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVS 118
           Q+++L   GF+       +   KS      A   Q IK   +  KE  +    +M  +V 
Sbjct: 59  QMRILHVNGFNGGEGGEEDPNAKSNSDGEKATKVQDIK---NNLKEAIETIVAAMSNLVP 115
Query: 119 S---ENKEIGEKLSEIGGRLDYPRL--TKELAEDIETLWADPAI---------------- 157
                N E   ++  I   ++ P      E  E  + LW D  +                
Sbjct: 116 PVELANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCA 175
Query: 158 -----------QDD-------VLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRN 199
                      QDD       +L  RV T+G+ E +F      +     + +FDVGGQR+
Sbjct: 176 QYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRD 229
Query: 200 ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML 259
           ERRKWI  F  V+A+IF  A S Y+  + ED Q NR+ E   LF  +         S +L
Sbjct: 230 ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVIL 289
Query: 260 FLNKFDIFEKKVLKVPLNVCEWF---------KDYQPVSTGKQEIENAYEFVKKKFEELY 310
           FLNK D+  +KVL     + ++F         +D  P       +  A  F++ +F  + 
Sbjct: 290 FLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRI- 348
Query: 311 FQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
             STA          + T A+D + +++ F    + ++R HL +  LL
Sbjct: 349 --STASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394

>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And Mg Length = 394

Iteration: 1
 Score =  125 bits (313), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 179/405 (44%), Gaps = 66/405 (16%)
Query: 9   MGLLCSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFK 65
           MG  C  N +     +EE AQ     +IE++++++ +  +   +LLLLGAGESGKSTI K
Sbjct: 1   MG--CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVK 58
Query: 66  QIKLLFQTGFD----EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSS-- 119
           Q+++L   GF+    E + ++  S         ++ + +  KE  +    +M  +V    
Sbjct: 59  QMRILHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVE 118
Query: 120 -ENKEIGEKLSEIGGRLDYPRL--TKELAEDIETLWADPAI------------------- 157
             N E   ++  I   ++ P      E  E  + LW D  +                   
Sbjct: 119 LANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYF 178
Query: 158 --------QDD-------VLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERR 202
                   QDD       +L  RV T+G+ E +F      +     + +FDVGGQR+ERR
Sbjct: 179 LDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERR 232
Query: 203 KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 262
           KWI  F  V+A+IF  A S Y+  + ED Q NR+ E   LF  +         S +LFLN
Sbjct: 233 KWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLN 292
Query: 263 KFDIFEKKVLKVPLNVCEWF---------KDYQPVSTGKQEIENAYEFVKKKFEELYFQS 313
           K D+  +KVL     + ++F         +D  P       +  A  F++ +F  +   S
Sbjct: 293 KQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRI---S 349
Query: 314 TAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
           TA          + T A+D + +++ F    + ++R HL +  LL
Sbjct: 350 TASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394

>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase Length = 402

Iteration: 1
 Score =  124 bits (312), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 177/401 (44%), Gaps = 64/401 (15%)
Query: 13  CSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69
           C  N +     +EE AQ     +IE++++++ +  +   +LLLLGAGESGKSTI KQ+++
Sbjct: 3   CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRI 62
Query: 70  LFQTGFD----EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSS---ENK 122
           L   GF+    E + ++  S         ++ + +  KE  +    +M  +V      N 
Sbjct: 63  LHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANP 122
Query: 123 EIGEKLSEIGGRLDYPRL--TKELAEDIETLWADPAI----------------------- 157
           E   ++  I   ++ P      E  E  + LW D  +                       
Sbjct: 123 ENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKI 182
Query: 158 ----QDD-------VLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 206
               QDD       +L  RV T+G+ E +F      +     + +FDVGGQR+ERRKWI 
Sbjct: 183 DVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQ 236
Query: 207 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 266
            F  V+A+IF  A S Y+  + ED Q NR+ E   LF  +         S +LFLNK D+
Sbjct: 237 CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
Query: 267 FEKKVLKVPLNVCEWF---------KDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPD 317
             +KVL     + ++F         +D  P       +  A  F++ +F  +   STA  
Sbjct: 297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRI---STASG 353
Query: 318 RVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
                   + T A+D + +++ F    + ++R HL +  LL
Sbjct: 354 DGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394

>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp Length = 338

Iteration: 1
 Score =  124 bits (311), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 164/346 (47%), Gaps = 68/346 (19%)
Query: 45  KHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKE 104
           K + K+LLLGAGESGKST  KQ++++    FD+   + +   I++NV + ++VL D  ++
Sbjct: 7   KRLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREK 66
Query: 105 LAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAED---------IETLWADP 155
           L     D+       +N+  G+KL     R   P   + + E          I  LW D 
Sbjct: 67  LHIPWGDN-------KNQLHGDKLMAFDTRA--PMAAQGMVETRVFLQYLPAIRALWEDS 117
Query: 156 AIQD----------------------------------DVLYARVRTTGVVEIQFSPVGE 181
            IQ+                                  D+L AR  T G+ E  F     
Sbjct: 118 GIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDF----- 172
Query: 182 HKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE 241
            +     +++ DVGG R+ER++W   F+ V++++F  + SE+DQ L ED Q NR+ E+  
Sbjct: 173 -EIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 231
Query: 242 LFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEF 301
           +F+ ++    F   S +LFLNK D+ E+KV  V  ++ ++F +++      ++++     
Sbjct: 232 IFETIVNNRVFSNVSIILFLNKTDLLEEKVQVV--SIKDYFLEFEGDPHCLRDVQ----- 284
Query: 302 VKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 347
              KF    F+    D+  R    + TTA++ + ++  F+ V +T+
Sbjct: 285 ---KFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 327

>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit From Entamoeba Histolytica, Ehg-Alpha-1 Length = 340

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 136/291 (46%), Gaps = 58/291 (19%)
Query: 50  LLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNE 109
           + LLG+GESGKSTI KQ+K+LF  GF E E  ++ S I +NV    + L + S  L    
Sbjct: 8   VXLLGSGESGKSTIAKQLKILFGGGFPEQERATHKSSICSNVVTCXRTLIEQSAILNH-- 65
Query: 110 TDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ----------- 158
               K+   S+     E  +E    L +   + EL  D+E LWAD  IQ           
Sbjct: 66  --PXKYQPKSK-----EFTTEDPVTLPF---SPELVGDVEALWADEGIQATYEESAKFQL 115
Query: 159 -----------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVG 195
                                  +D+++ R +TTG+ E  F            + L DVG
Sbjct: 116 PDCAKYLFENVKRIAXEDYVPTEEDLIHNRTKTTGIHEYDFV------VKDIPFHLIDVG 169
Query: 196 GQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 255
           GQR+ER+ W+  F  V   IF  +++EYD  L+ED   +R+ E+  +F  +      +  
Sbjct: 170 GQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFKDIXTNEFLKGA 229
Query: 256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKF 306
             ++FLNK D+FE+K+ KVPLN    F +Y    TG        +++++ F
Sbjct: 230 VKLIFLNKXDLFEEKLTKVPLNTI--FPEY----TGGDNAVXGAQYIQQLF 274

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	1e-106
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	1e-88
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	3e-88
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	3e-85
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	3e-80
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-06
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	3e-06
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-06
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	4e-06
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	4e-06
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	7e-06
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	8e-06
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	9e-06
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-05
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	1e-05
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-05
2ged_A	193	SR-beta, signal recognition particle receptor beta	1e-05
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-05
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	2e-05
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-05
1nrj_B	218	SR-beta, signal recognition particle receptor beta	4e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-05
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	4e-04

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354

 Score =  314 bits (806), Expect = e-106
 Identities = 281/352 (79%), Positives = 303/352 (86%), Gaps = 34/352 (9%)

Query: 41  TKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYD 100
             +  HI+KLLLLGAGESGKSTIFKQIKLLFQTGFDE ELKSY+ VIHANVYQTIK+L+D
Sbjct: 3   MGSGIHIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHD 62

Query: 101 GSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAI--- 157
           G+KE AQNETDS K+++SSE+  IGEKLSEIGGRLDYPRLTK++AE IETLW DPAI   
Sbjct: 63  GTKEFAQNETDSAKYMLSSESIAIGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQET 122

Query: 158 -------------------------------QDDVLYARVRTTGVVEIQFSPVGEHKKSG 186
                                          ++DVLYARVRTTGVVEIQFSPVGE+KKSG
Sbjct: 123 CARGNELQVPDCTKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSG 182

Query: 187 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 246
           EVYRLFDVGGQRNERRKWIHLFEGV+AVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV
Sbjct: 183 EVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 242

Query: 247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKF 306
           LKQPCFEKTSFMLFLNKFDIFEKKVL VPLNVCEWF+DYQPVS+GKQEIE+AYEFVKKKF
Sbjct: 243 LKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKF 302

Query: 307 EELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
           EELY+Q+TAPDRVDRVFKIYRTTALD KLVKKTFKLVDETLRRR+L EAGLL
Sbjct: 303 EELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLLEAGLL 354

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362

 Score =  270 bits (690), Expect = 1e-88
 Identities = 97/383 (25%), Positives = 172/383 (44%), Gaps = 56/383 (14%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MG   S        D     ++  I+R + ++ +    + K+LLLGAGESGKST  KQ++
Sbjct: 1   MGCTLSAE------DKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMR 54

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           ++    FD+   + +   I++NV + ++VL D  ++L     D+   +   +      + 
Sbjct: 55  IIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRA 114

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAI------------------------------- 157
                 +   R+  +    I  LW D  I                               
Sbjct: 115 PMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDY 174

Query: 158 ---QDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 214
              Q D+L AR  T G+ E  F            +++ DVGGQR+ER++W   F+ V+++
Sbjct: 175 IPSQQDILLARRPTKGIHEYDFEIKNVP------FKMVDVGGQRSERKRWFECFDSVTSI 228

Query: 215 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKV 274
           +F  + SE+DQ L ED Q NR+ E+  +F+ ++    F   S +LFLNK D+ E+KV  V
Sbjct: 229 LFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVV 288

Query: 275 PLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 334
            +   ++F +++          +    V+K   E  F+    D+  R    + TTA++ +
Sbjct: 289 SIK--DYFLEFEGDP-------HCLRDVQKFLVE-CFRGKRRDQQQRPLYHHFTTAINTE 338

Query: 335 LVKKTFKLVDETLRRRHLFEAGL 357
            ++  F+ V +T+   +L +  L
Sbjct: 339 NIRLVFRDVKDTILHDNLKQLML 361

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402

 Score =  270 bits (691), Expect = 3e-88
 Identities = 98/409 (23%), Positives = 168/409 (41%), Gaps = 74/409 (18%)

Query: 9   MGLLCSK-NRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQI 67
           MG L +         +  +     +IE++++++ +  +   +LLLLGAGESGKSTI KQ+
Sbjct: 1   MGCLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQM 60

Query: 68  KLLFQTGFDE---------------AELKSYISVIHANVYQTIKVLYDGSKELAQNETDS 112
           ++L   GF+                 E  + +  I  N+ + I+ +      L      +
Sbjct: 61  RILHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELA 120

Query: 113 MKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ-------------- 158
                   N+   + +  +    D+     E  E  + LW D  ++              
Sbjct: 121 NPE-----NQFRVDYILSVMNVPDFD-FPPEFYEHAKALWEDEGVRACYERSNEYQLIDC 174

Query: 159 --------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQR 198
                                D+L  RV T+G+ E +F     +      + +FDVGGQR
Sbjct: 175 AQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVN------FHMFDVGGQR 228

Query: 199 NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM 258
           +ERRKWI  F  V+A+IF  A S Y+  + ED Q NR+ E   LF  +         S +
Sbjct: 229 DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 288

Query: 259 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTG---------KQEIENAYEFVKKKFEEL 309
           LFLNK D+  +KVL     + ++F ++   +T             +  A  F++ +F  +
Sbjct: 289 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRI 348

Query: 310 YFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
              S            + T A+D + +++ F    + ++R HL +  LL
Sbjct: 349 STASGDG---RHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353

 Score =  261 bits (667), Expect = 3e-85
 Identities = 124/372 (33%), Positives = 185/372 (49%), Gaps = 58/372 (15%)

Query: 21  AADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAEL 80
           A D     ++  I+R + ++ +      KLLLLGAGESGKSTI KQ+K++ + G+ E E 
Sbjct: 6   AEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEEC 65

Query: 81  KSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRL 140
           K Y +V+++N  Q+I  +      L  +  D+          +   +L  + G  +   +
Sbjct: 66  KQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDA-------ARADDARQLFVLAGAAEEGFM 118

Query: 141 TKELAEDIETLWADPAIQ----------------------------------DDVLYARV 166
           T ELA  I+ LW D  +Q                                   DVL  RV
Sbjct: 119 TAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRV 178

Query: 167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQT 226
           +TTG+VE  F+    H      +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD  
Sbjct: 179 KTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLV 232

Query: 227 LFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQ 286
           L EDE+ NRM E+ +LFD +     F  TS +LFLNK D+FE+K+ K PL          
Sbjct: 233 LAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPL------TICY 286

Query: 287 PVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 346
           P   G    E A  +++ +FE+L  +        +    + T A D K V+  F  V + 
Sbjct: 287 PEYAGSNTYEEAAAYIQCQFEDLNKRKD-----TKEIYTHFTCATDTKNVQFVFDAVTDV 341

Query: 347 LRRRHLFEAGLL 358
           + + +L + GL 
Sbjct: 342 IIKNNLKDCGLF 353

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327

 Score =  247 bits (631), Expect = 3e-80
 Identities = 102/351 (29%), Positives = 168/351 (47%), Gaps = 59/351 (16%)

Query: 42  KAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDG 101
              +   KLLLLG GESGKST  KQ++++  +G+ + + + +  +++ N++  ++ +   
Sbjct: 2   ADARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMI-- 59

Query: 102 SKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ--- 158
                    D++K     E+ +   +L                 + I++LW DP IQ   
Sbjct: 60  ------RAMDTLKIPYKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECY 113

Query: 159 -------------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGE 187
                                           DVL  RV TTG++E  F           
Sbjct: 114 DRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPF------DLQSV 167

Query: 188 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 247
           ++R+ DVGGQR+ERRKWIH FE V++++F  A+SEYDQ L E + +NRM E+K LF  ++
Sbjct: 168 IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII 227

Query: 248 KQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFE 307
             P F+ +S +LFLNK D+ E+K++   L     F +Y        + + A EF+ K F 
Sbjct: 228 TYPWFQNSSVILFLNKKDLLEEKIMYSHLVDY--FPEYDGPQR---DAQAAREFILKMFV 282

Query: 308 ELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 358
           +L   S      D++   + T A D + ++  F  V +T+ + +L E  L+
Sbjct: 283 DLNPDS------DKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 327

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 6e-07
 Identities = 42/329 (12%), Positives = 90/329 (27%), Gaps = 107/329 (32%)

Query: 36  RIEQETKAEKHIQKL------LLLGAGESGKSTI------FKQIKLLFQTG-FDEAELKS 82
           R++   K  + + +L      L+ G   SGK+ +        +++       F       
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF------- 185

Query: 83  YISVIHANVYQTI-----KVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDY 137
           ++++ + N  +T+     K+LY            S    +      I  +L  +     Y
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH--SIQAELRRLLKSKPY 243

Query: 138 PRLTKELAEDIETLWADPAIQDDVLYARV--------------RTTGVVEI-----QFSP 178
                        L     +  +V  A+               R   V +          
Sbjct: 244 EN----------CL----LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 179 VGEHKKSG----EVYRLFDVGGQRNERRKWIH-----LFEGVSAV------IFCAAISEY 223
             +H        EV  L           K++      L   V         I   +I + 
Sbjct: 290 SLDHHSMTLTPDEVKSLL---------LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 224 DQTL--FEDEQKNRMMETKELFDWVLK----QPCFEKTSFMLFLNKFDIFEKKVLKVPLN 277
             T   ++    +++    E    VL+    +  F+         +  +F      +P  
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD---------RLSVFPPSA-HIPTI 390

Query: 278 VCE--WFKDYQPVSTGKQEIENAYEFVKK 304
           +    W   +  + +    + N  +  K 
Sbjct: 391 LLSLIW---FDVIKSDVMVVVN--KLHKY 414

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 35/168 (20%)

Query: 192 FDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 251
           F+ G  + + +  + +FE        A +  +D    +D  K+ +  +KE  D ++    
Sbjct: 9   FETGEHQYQYKDILSVFED-------AFVDNFDCKDVQDMPKSIL--SKEEIDHIIMSKD 59

Query: 252 FEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYF 311
               +  L    F     K       + + F +        + +   Y+F+    +    
Sbjct: 60  AVSGTLRL----FWTLLSK----QEEMVQKFVE--------EVLRINYKFLMSPIKT--- 100

Query: 312 QSTAPDRVDRVFKIYRTTAL-DPKLVKKTF----KLVDETLRRRHLFE 354
           +   P  + R++   R     D ++  K      +   +   R+ L E
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQALLE 146

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 179 VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 238
           +   +     + ++D+GGQ   R  W   F    AVI+       D T   D  ++RM  
Sbjct: 58  LETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVV-----DST---D--RDRMGV 107

Query: 239 TKELFDWVLKQPCFEKTSFMLFLNKFDI 266
            K     +L +    K+  ++F NK D+
Sbjct: 108 AKHELYALLDEDELRKSLLLIFANKQDL 135

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 16/79 (20%)

Query: 191 LFDVGGQRNERRKWIHLFEGVSAVIF---CAAISEYDQTLFEDEQKNRMMETKELFDWVL 247
            FD+GG    RR W +    ++ ++F   CA     D          R++E+KE  D ++
Sbjct: 73  TFDLGGHIQARRVWKNYLPAINGIVFLVDCA-----D--------HERLLESKEELDSLM 119

Query: 248 KQPCFEKTSFMLFLNKFDI 266
                     ++  NK D 
Sbjct: 120 TDETIANVPILILGNKIDR 138

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 16/93 (17%)

Query: 179 VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 238
           +GE K     + L+ V GQ         +  GV  ++F A           D   NR+  
Sbjct: 66  IGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVA-----------DSAPNRLRA 114

Query: 239 TKELFDWVLKQ-----PCFEKTSFMLFLNKFDI 266
             E    + +         +    ++ +NK D+
Sbjct: 115 NAESMRNMRENLAEYGLTLDDVPIVIQVNKRDL 147

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 46.0 bits (110), Expect = 4e-06
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 192 FDVGGQRNERRKWIHLFEGVSAVIF---CAAISEYDQTLFEDEQKNRMMETKELFDWVLK 248
           FD+GG    RR W   F  V+ ++F    A     D          R  E +   D +  
Sbjct: 72  FDLGGHIQARRLWKDYFPEVNGIVFLVDAA-----D--------PERFDEARVELDALFN 118

Query: 249 QPCFEKTSFMLFLNKFDI 266
               +   F++  NK D 
Sbjct: 119 IAELKDVPFVILGNKIDA 136

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 45.6 bits (109), Expect = 4e-06
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 191 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250
           ++D+GG  + R  W   +    AVI+   +   D        ++R+  +K     +L++ 
Sbjct: 55  VWDLGGLTSIRPYWRCYYSNTDAVIYV--VDSCD--------RDRIGISKSELVAMLEEE 104

Query: 251 CFEKTSFMLFLNKFDI 266
              K   ++F NK D+
Sbjct: 105 ELRKAILVVFANKQDM 120

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 10/76 (13%)

Query: 191 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250
           ++DVGGQ   R  W H F+    +IF       D     D  + R+ E +E    +L + 
Sbjct: 48  VWDVGGQDKIRPLWRHYFQNTQGLIFVV-----DSN---D--RERVNEAREELMRMLAED 97

Query: 251 CFEKTSFMLFLNKFDI 266
                  ++F NK D+
Sbjct: 98  ELRDAVLLVFANKQDL 113

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 10/76 (13%)

Query: 191 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250
           ++DVGGQ++ R  W + FE    +I+   +   D        + RM + +     +L + 
Sbjct: 66  IWDVGGQKSLRSYWRNYFESTDGLIWV--VDSAD--------RQRMQDCQRELQSLLVEE 115

Query: 251 CFEKTSFMLFLNKFDI 266
                + ++F NK D+
Sbjct: 116 RLAGATLLIFANKQDL 131

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 44.5 bits (106), Expect = 9e-06
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 191 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250
           ++D+GGQ + R  W   +     VI    +   D        + R+  T+E    +L   
Sbjct: 69  MWDIGGQESLRSSWNTYYTNTEFVIVV--VDSTD--------RERISVTREELYKMLAHE 118

Query: 251 CFEKTSFMLFLNKFDI 266
              K   ++F NK D+
Sbjct: 119 DLRKAGLLIFANKQDV 134

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 191 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250
           ++DVGGQ   R  W H F+    +IF       D     D  + R+ E+ +    +L++ 
Sbjct: 77  VWDVGGQDKIRPLWRHYFQNTQGLIFVV-----DSN---D--RERVQESADELQKMLQED 126

Query: 251 CFEKTSFMLFLNKFDI 266
                  ++F NK D+
Sbjct: 127 ELRDAVLLVFANKQDM 142

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 179 VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 238
           V           ++D+GGQ + R  W   +   +AVIF   +   D        K+RM  
Sbjct: 54  VETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFV--VDSTD--------KDRMST 103

Query: 239 TKELFDWVLKQPCFEKTSFMLFLNKFDI 266
             +    +L++   +  + ++F NK D 
Sbjct: 104 ASKELHLMLQEEELQDAALLVFANKQDQ 131

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 191 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250
           L+D+GGQ   R  W     GVSA+++       D     D  + ++  +K     +L +P
Sbjct: 71  LWDIGGQPRFRSMWERYCRGVSAIVYM-----VDAA---D--QEKIEASKNELHNLLDKP 120

Query: 251 CFEKTSFMLFLNKFDI 266
             +    ++  NK D+
Sbjct: 121 QLQGIPVLVLGNKRDL 136

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 16/97 (16%)

Query: 178 PVGEHKKSGEVYRLFDVGGQRNERRKWIHLFE----GVSAVIFCAAISEYDQTLFEDEQK 233
           P+      G    L D  G    R K     +     V  +IF       D T+      
Sbjct: 82  PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMV-----DSTVDPK--- 133

Query: 234 NRMMETKELFDWVLKQP---CFEKTSFMLFLNKFDIF 267
            ++  T E    +L      C      ++  NK ++F
Sbjct: 134 -KLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 191 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250
           ++D+GGQ + R  W   +     VI        D T   D  + R+  T+E    +L   
Sbjct: 64  MWDIGGQESLRSSWNTYYTNTEFVIVVV-----DST---D--RERISVTREELYKMLAHE 113

Query: 251 CFEKTSFMLFLNKFDI 266
              K   ++F NK D+
Sbjct: 114 DLRKAGLLIFANKQDV 129

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 10/76 (13%)

Query: 191 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250
           ++DVGGQ   R  W H F+    +IF       D     D  + R+ E +E    +L + 
Sbjct: 213 VWDVGGQDKIRPLWRHYFQNTQGLIFVV-----DSN---D--RERVNEAREELMRMLAED 262

Query: 251 CFEKTSFMLFLNKFDI 266
                  ++F NK D+
Sbjct: 263 ELRDAVLLVFANKQDL 278

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 10/76 (13%)

Query: 191 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250
           ++D+GGQR  R  W   FE    +I+       D     D  + R  ET +    +L++ 
Sbjct: 64  VWDIGGQRKIRPYWRSYFENTDILIYVI-----DSA---D--RKRFEETGQELTELLEEE 113

Query: 251 CFEKTSFMLFLNKFDI 266
                  ++F NK D+
Sbjct: 114 KLSCVPVLIFANKQDL 129

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 16/97 (16%)

Query: 178 PVGEHKKSGEVYRLFDVGGQRNERRKWIHLFE----GVSAVIFCAAISEYDQTLFEDEQK 233
           P+      G    L D  G    R K     +     V  +IF       D T+      
Sbjct: 46  PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMV-----DSTVDPK--- 97

Query: 234 NRMMETKELFDWVLKQP---CFEKTSFMLFLNKFDIF 267
            ++  T E    +L      C      ++  NK ++F
Sbjct: 98  -KLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 12/78 (15%)

Query: 191 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 250
           +FD+ GQ   R  W H ++   A+IF       D +   D  + RM+  KE  D +L  P
Sbjct: 71  VFDMSGQGRYRNLWEHYYKEGQAIIFVI-----DSS---D--RLRMVVAKEELDTLLNHP 120

Query: 251 --CFEKTSFMLFLNKFDI 266
                +   + F NK D+
Sbjct: 121 DIKHRRIPILFFANKMDL 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	100.0
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	100.0
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	100.0
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	100.0
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	100.0
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.94
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.91
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.91
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.9
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.9
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.89
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.89
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.89
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.89
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.89
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.89
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.89
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.89
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.89
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.88
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.88
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.88
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.88
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.87
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.87
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.87
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.87
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.87
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.87
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.87
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.86
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.86
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.86
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.86
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.86
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.86
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.86
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.86
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.86
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.86
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.86
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.86
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.86
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.86
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.86
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.86
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.86
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.86
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.86
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.86
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.85
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.85
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.85
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.85
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.85
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.85
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.85
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.85
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.85
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.85
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.85
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.85
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.85
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.85
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.85
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.85
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.85
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.85
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.85
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.85
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.85
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.85
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.85
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.85
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.85
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.85
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.84
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.84
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.84
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.84
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.84
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.84
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.83
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.83
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.83
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.83
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.83
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.83
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.83
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.82
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.82
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.82
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.82
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.81
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.81
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.81
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.81
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.81
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.81
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.81
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.8
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.8
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.79
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.79
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.78
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.64
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.77
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.76
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.75
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.75
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.75
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.74
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.74
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.72
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.72
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.72
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.7
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.69
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.68
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.68
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.67
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.66
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.66
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.61
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.61
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.61
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.61
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.58
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.57
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.56
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.53
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.53
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.53
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.52
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.52
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.52
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.52
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.52
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.51
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.5
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.48
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.48
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.48
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.48
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.47
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.47
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.47
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.47
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.46
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.46
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.46
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.45
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.45
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.45
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.45
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.45
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.45
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.45
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.45
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.44
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.43
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.41
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.41
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.41
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.4
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.4
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.39
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.39
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.38
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.34
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.34
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.33
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.3
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.3
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.29
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.26
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.26
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.25
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.25
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.25
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.24
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.19
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.17
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.16
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.09
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.08
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.06
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.05
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.99
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.98
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.98
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.97
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.94
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.93
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.9
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.89
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.78
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.72
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.69
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.6
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.58
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.39
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.39
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.37
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.36
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.24
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.18
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.12
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.01
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	97.63
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.56
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.33
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.06
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	96.95
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.69
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.67
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	96.55
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.14
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.01
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.99
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.98
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.83
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.81
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.79
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	95.68
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.64
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.61
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.58
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.56
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.54
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.54
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.54
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.45
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.38
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.38
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.36
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.36
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.33
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.32
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.18
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.18
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.18
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.17
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	95.16
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.15
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.11
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.1
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.1
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.0
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	94.99
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.95
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	94.95
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	94.94
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	94.94
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	94.91
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	94.91
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	94.89
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	94.87
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.85
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	94.85
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.84
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	94.83
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	94.77
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	94.77
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	94.77
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.76
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	94.73
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.7
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	94.7
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	94.68
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	94.68
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	94.67
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	94.6
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	94.6
1b0u_A	262	Histidine permease; ABC transporter, transport pro	94.59
1sgw_A	214	Putative ABC transporter; structural genomics, P p	94.59
1ji0_A	240	ABC transporter; ATP binding protein, structural g	94.58
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	94.56
1g6h_A	257	High-affinity branched-chain amino acid transport	94.51
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	94.49
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	94.47
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	94.47
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	94.46
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	94.46
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	94.46
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	94.45
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	94.44
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	94.43
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.43
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	94.42
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	94.4
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	94.4
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.34
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	94.34
1via_A	175	Shikimate kinase; structural genomics, transferase	94.33
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	94.33
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	94.33
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	94.24
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	94.24
2eyu_A	261	Twitching motility protein PILT; pilus retraction	94.23
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	94.22
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	94.18
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	94.17
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	94.16
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.13
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	94.12
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	94.11
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.11
2ghi_A	260	Transport protein; multidrug resistance protein, M	94.11
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.1
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.07
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	94.04
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.04
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	94.03
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.01
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	94.0
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	94.0
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	94.0
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	94.0
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	94.0
3kta_A	182	Chromosome segregation protein SMC; structural mai	93.97
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	93.97
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	93.95
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	93.93
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	93.93
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	93.89
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	93.89
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	93.88
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	93.79
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	93.76
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	93.73
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	93.73
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	93.72
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	93.72
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	93.72
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	93.72
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	93.69
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	93.67
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	93.67
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	93.66
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	93.66
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	93.65
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	93.62
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	93.61
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	93.59
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	93.57
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	93.57
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	93.57
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	93.56
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	93.54
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	93.54
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	93.5
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	93.5
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	93.42
2vli_A	183	Antibiotic resistance protein; transferase, tunica	93.39
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	93.35
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	93.34
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	93.34
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	93.31
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	93.3
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	93.27
2cvh_A	220	DNA repair and recombination protein RADB; filamen	93.26
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	93.24
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	93.2
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	93.19
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	93.17
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	93.17
3co5_A	143	Putative two-component system transcriptional RES	93.15
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	93.08
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	93.03
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	92.93
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	92.89
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	92.85
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	92.84
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	92.8
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	92.78
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	92.76
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	92.74
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	92.7
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	92.66
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	92.62
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	92.61
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	92.6
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	92.59
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	92.57
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	92.53
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	92.49
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	92.41
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	92.4
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	92.39
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	92.36
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	92.27
2ewv_A	372	Twitching motility protein PILT; pilus retraction	92.25
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	92.15
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	92.14
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	92.13
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	92.07
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	92.07
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	92.01
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	92.0
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	91.96
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	91.91
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	91.82
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	91.82
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	91.82
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	91.82
3bos_A	242	Putative DNA replication factor; P-loop containing	91.79
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	91.76
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	91.75
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	91.66
1p9r_A	418	General secretion pathway protein E; bacterial typ	91.59
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	91.59
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	91.56
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	91.52
2og2_A	359	Putative signal recognition particle receptor; nuc	91.5
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	91.33
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	91.27
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	91.24
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	91.19
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	91.17
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	91.06
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	91.02
2chg_A	226	Replication factor C small subunit; DNA-binding pr	90.97
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	90.97
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	90.95
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	90.88
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	90.83
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	90.83
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	90.78
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	90.45
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	90.25
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	90.22
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	90.13
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	90.1
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	90.05
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	89.99
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	89.97
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	89.83
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	89.79
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	89.69
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	89.68
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	89.65
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	89.63
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	89.54
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	89.54
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	89.5
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	89.4
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	89.32
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	89.27
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	89.2
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	89.14
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	89.1
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	88.95
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	88.94
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	88.94
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	88.84
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	88.8
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	88.72
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	88.69
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	88.69
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	88.69
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	88.58
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	88.44
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	88.4
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	88.37
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	88.31
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	88.3
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	88.25
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	88.25
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	88.23
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	88.23
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	88.18
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	88.15
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	88.04
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	88.01
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	87.97
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	87.96
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	87.9
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	87.7
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	87.63
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	87.59
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	87.55
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	87.55
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	87.5
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	87.5
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	87.48
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	87.46
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	87.33
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	87.32
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	87.17
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	87.15
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	87.08
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	86.93
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	86.86
1e69_A	322	Chromosome segregation SMC protein; structural mai	86.84
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	86.83
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	86.79

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=100.00  E-value=8.6e-66  Score=494.39  Aligned_cols=313  Identities=39%  Similarity=0.646  Sum_probs=256.6

Q ss_pred             hcHHHHHhcHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018283           22 ADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDG  101 (358)
Q Consensus        22 ~~~~~~~~s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I~~n~~~~~~~l~~~  101 (358)
                      ++++++++|++||++|++++++.++.+||||||+|+||||||+|||+++|++||+++|+..|+++||.|++++|+.|+++
T Consensus         7 ~~~~~~~~s~~id~~l~~~~~~~~~~~klLlLG~geSGKST~~KQmkii~~~g~~~~e~~~~~~~i~~N~~~~~~~l~~~   86 (353)
T 1cip_A            7 EDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRA   86 (353)
T ss_dssp             ------------------------CEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhcccceEEEEcCCCCCchhHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccccccccccCcchHHHHHHHhhccCCCCCccCcHHHHHHHHHhhcCCCCC-----------------------
Q 018283          102 SKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ-----------------------  158 (358)
Q Consensus       102 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~i~-----------------------  158 (358)
                      |+.++++..       +|+++..++.+..+....+...+++++++.|..||+||+||                       
T Consensus        87 ~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~iq~~~~~~~e~~l~dsa~yfl~~~~  159 (353)
T 1cip_A           87 MGRLKIDFG-------DAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLD  159 (353)
T ss_dssp             HHHHTCCCS-------STTHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHH
T ss_pred             HHHhCCCCC-------CcchHHHHHHHHhhccccccccCCHHHHHHHHHHHCCHHHHHHHHhhhhcccCccHHHHHHHHH
Confidence            999997643       56677777777665433223578899999999999999998                       


Q ss_pred             -----------cceeeeeeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEcccccccc
Q 018283          159 -----------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTL  227 (358)
Q Consensus       159 -----------~Dil~~~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~  227 (358)
                                 +|+++++.+|+|+.+..|      ..+++.+++||||||+++|++|.+||++++++|||+|+|+||+++
T Consensus       160 ri~~~~Y~PT~~Dil~~~~~T~Gi~~~~~------~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l  233 (353)
T 1cip_A          160 RIAQPNYIPTQQDVLRTRVKTTGIVETHF------TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVL  233 (353)
T ss_dssp             HHTSTTCCCCHHHHHTCCCCCCSEEEEEE------EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEE
T ss_pred             HHhcCCCCCCccccccccCceeceEEEEE------eeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccc
Confidence                       789999999999999888      777899999999999999999999999999999999999999999


Q ss_pred             ccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHH
Q 018283          228 FEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFE  307 (358)
Q Consensus       228 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~  307 (358)
                      .|+...+++.++..+|+.+++++++.++|++||+||+||+++|+..++++.+  ||+|    .|+.+.+++.+|+..+|.
T Consensus       234 ~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~--fp~~----~g~~~~~e~~~~~~~~f~  307 (353)
T 1cip_A          234 AEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEY----AGSNTYEEAAAYIQCQFE  307 (353)
T ss_dssp             TTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGT--CTTC----CSCSCHHHHHHHHHHHHH
T ss_pred             cccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhc--cccc----CCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999888999999999999999999988888876  8888    566789999999999999


Q ss_pred             HHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHHhhhhhcCCC
Q 018283          308 ELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL  358 (358)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~~~~~l~  358 (358)
                      .+.+.     ...+.+++|+|||++++||+++|++|.+.|++.+++++||+
T Consensus       308 ~l~~~-----~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l~~~~l~  353 (353)
T 1cip_A          308 DLNKR-----KDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF  353 (353)
T ss_dssp             TTCSC-----TTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-------
T ss_pred             Hhhcc-----cCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence            87421     12357999999999999999999999999999999999985

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=100.00  E-value=3e-65  Score=496.04  Aligned_cols=333  Identities=30%  Similarity=0.494  Sum_probs=256.2

Q ss_pred             hcccccCCCC-CChhcHHHHHhcHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhcCCCCCHH---------
Q 018283            9 MGLLCSKNRR-YNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEA---------   78 (358)
Q Consensus         9 ~~~~~~~~~~-~~~~~~~~~~~s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~---------   78 (358)
                      ||||||+... ...++++++++|++||++|++++++.++++|+||||+|+||||||+|||+++|++||+++         
T Consensus         1 mg~~~s~~~~~~~~~~~~~~~~~~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmkiih~~gfs~~E~~~~~~~~   80 (402)
T 1azs_C            1 MGCLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAA   80 (402)
T ss_dssp             -----------------------------------CCTTEEEEEEEESTTSSHHHHHHHHHHHHCCC-------------
T ss_pred             CCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHhhccceEEEecCCCCchhhHHHHHHHHhCCCCChHHhhhhHHHH
Confidence            9998776322 123567889999999999999999999999999999999999999999999999999986         


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcchHHHHHHHhhccCCCCCccCcHHHHHHHHHhh
Q 018283           79 ------ELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW  152 (358)
Q Consensus        79 ------e~~~~~~~I~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw  152 (358)
                            |+..|++.|+.|++++|+.|+++|..+.++.     .+.+|+++..++.+..+.... ...|++++++.|..||
T Consensus        81 ~~~~~~e~~~~~~~i~~Ni~~~~~~i~~a~~~l~~~i-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~lW  154 (402)
T 1azs_C           81 RSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPV-----ELANPENQFRVDYILSVMNVP-DFDFPPEFYEHAKALW  154 (402)
T ss_dssp             ------CTTHHHHHHHHHHHHHHHHHHHHHHHSSSCC-----CCSSGGGHHHHHHHHHTTTCS-SCCCCHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----ccCCchhHHHHHHHHhhcccC-CCCCCHHHHHHHHHHH
Confidence                  5567999999999999999999999987421     134677877788877765332 2468999999999999


Q ss_pred             cCCCCC----------------------------------cceeeeeeccCceeeEeeccCCCCcccceEEEEEecCCCc
Q 018283          153 ADPAIQ----------------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQR  198 (358)
Q Consensus       153 ~d~~i~----------------------------------~Dil~~~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~  198 (358)
                      +||+||                                  +|+++++.+|+|+.+..|      ..+++.|+|||||||+
T Consensus       155 ~d~~iq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~TiGi~~~~~------~~~~v~l~iwDtaGQe  228 (402)
T 1azs_C          155 EDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQR  228 (402)
T ss_dssp             HCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTCTTCCCCHHHHHHCCCCCCSEEEEEE------EETTEEEEEEEECCSG
T ss_pred             cCHHHHHHHHhcccceeccchhhHHHHHHHhhccccCCccccccccccceeeeEEEEe------ecCCccceecccchhh
Confidence            999998                                  789999999999999888      6778999999999999


Q ss_pred             hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhc--cCCC
Q 018283          199 NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVL--KVPL  276 (358)
Q Consensus       199 ~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~--~~~l  276 (358)
                      ++|++|.+||++++++|||+|+|+||+++.|+.+.+++.++..||+.+++++++.++|++||+||+||+++|+.  .+++
T Consensus       229 ~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l  308 (402)
T 1azs_C          229 DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKI  308 (402)
T ss_dssp             GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCG
T ss_pred             hhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccch
Confidence            99999999999999999999999999999999999999999999999999888889999999999999999884  3466


Q ss_pred             cccccccccccCC--------CCc-ccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHH
Q 018283          277 NVCEWFKDYQPVS--------TGK-QEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       277 ~~~~~f~~y~~~~--------~g~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                      ..  |||+|.+-.        .|+ .+.++|..|+..+|..+++....   ..+.+++|+|||+|++||+.+|.+|.+.|
T Consensus       309 ~~--~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~---~~~~~~~~~TSA~d~~nV~~vF~~v~~~I  383 (402)
T 1azs_C          309 ED--YFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGD---GRHYCYPHFTCAVDTENIRRVFNDCRDII  383 (402)
T ss_dssp             GG--TCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCT---TSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             hh--ccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccc---cCcccEEEEEEeecCcCHHHHHHHHHHHH
Confidence            54  599995311        132 24789999999999887643211   23568999999999999999999999999


Q ss_pred             HHhhhhhcCCC
Q 018283          348 RRRHLFEAGLL  358 (358)
Q Consensus       348 ~~~~~~~~~l~  358 (358)
                      ++.+++.+||+
T Consensus       384 ~~~~l~~~~~~  394 (402)
T 1azs_C          384 QRMHLRQYELL  394 (402)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHhcCc
Confidence            99999999986

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=100.00  E-value=2e-65  Score=485.49  Aligned_cols=290  Identities=35%  Similarity=0.618  Sum_probs=262.3

Q ss_pred             HhhccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcchH
Q 018283           43 AEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENK  122 (358)
Q Consensus        43 ~~~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~  122 (358)
                      +.++++|+||||+|+||||||+|||+++|++||+++|+..|+++||.|++++|+.|+++|+.|+++..       +|+++
T Consensus         3 ~~~~~~klLlLG~geSGKSTi~KQmkiih~~gfs~~e~~~~~~~i~~N~~~~~~~li~a~~~l~i~~~-------~~~~~   75 (327)
T 3ohm_A            3 DARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYK-------YEHNK   75 (327)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCS-------STHHH
T ss_pred             hhcccceEEEEcCCCccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCC-------CchhH
Confidence            45689999999999999999999999999999999999999999999999999999999999998743       78888


Q ss_pred             HHHHHHhhccCCCCCccCcHHHHHHHHHhhcCCCCC----------------------------------cceeeeeecc
Q 018283          123 EIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ----------------------------------DDVLYARVRT  168 (358)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~i~----------------------------------~Dil~~~~~T  168 (358)
                      ..++.+.+++... ...+++++++.|.+||+||+||                                  +|+++++.||
T Consensus        76 ~~~~~~~~~~~~~-~~~~~~e~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dilr~r~~T  154 (327)
T 3ohm_A           76 AHAQLVREVDVEK-VSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPT  154 (327)
T ss_dssp             HHHHHHHTCCGGG-CCCCCTTHHHHHHHHHTCHHHHHHHHGGGGSCCCTTHHHHHTTHHHHHSTTCCCCHHHHTTCCCCC
T ss_pred             HHHHHHhcccccc-cccccHHHHHHHHHHHcCHHHHHHHHccccceecccHHHHHHHHHHHhccCCCccccchhcccCce
Confidence            8888888765543 3568999999999999999999                                  8999999999


Q ss_pred             CceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHc
Q 018283          169 TGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK  248 (358)
Q Consensus       169 ~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~  248 (358)
                      +|+.+..|      ..+++++++||||||+++|++|.+||++++++|||+|+|+||+++.++++.+++.+++.+|+++++
T Consensus       155 iGi~~~~~------~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~  228 (327)
T 3ohm_A          155 TGIIEYPF------DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT  228 (327)
T ss_dssp             CSEEEEEE------EETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred             eeEEEEEE------EeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh
Confidence            99999999      888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCc-ccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEE
Q 018283          249 QPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGK-QEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYR  327 (358)
Q Consensus       249 ~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~  327 (358)
                      ++++.++|++||+||+||+++|+..+|+..  |||+|    +|+ .+.++|.+||.++|.++++   +   ..+.+++|+
T Consensus       229 ~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~--~fp~y----~g~~~~~e~a~~fi~~~F~~~~~---~---~~~~i~~~~  296 (327)
T 3ohm_A          229 YPWFQNSSVILFLNKKDLLEEKIMYSHLVD--YFPEY----DGPQRDAQAAREFILKMFVDLNP---D---SDKIIYSHF  296 (327)
T ss_dssp             SGGGTTCEEEEEEECHHHHHHHTTTSCGGG--TCTTC----CSCSSCHHHHHHHHHHHHHSSCT---T---TTSCEEEEE
T ss_pred             hhccCCceEEEEEECchhhhhhhccchHhh--hchhc----cCCCCCHHHHHHHHHHHHHhhcc---c---ccCCcEEEE
Confidence            999999999999999999999998888765  59999    564 6899999999999998742   1   246799999


Q ss_pred             eeccChhhHHHHHHHHHHHHHHhhhhhcCCC
Q 018283          328 TTALDPKLVKKTFKLVDETLRRRHLFEAGLL  358 (358)
Q Consensus       328 tSA~d~~ni~~vf~~i~~~i~~~~~~~~~l~  358 (358)
                      |||+|++||+.+|..|++.|++.+|+++||+
T Consensus       297 TsA~d~~nV~~vF~~v~~~Il~~~l~~~~l~  327 (327)
T 3ohm_A          297 TCATDTENIRFVFAAVKDTILQLNLKEYNLV  327 (327)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred             EEeecCHHHHHHHHHHHHHHHHHhHHhcCCC
Confidence            9999999999999999999999999999985

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=100.00  E-value=3.5e-64  Score=484.72  Aligned_cols=318  Identities=31%  Similarity=0.534  Sum_probs=249.1

Q ss_pred             hcccccCCCCCChhcHHHHHhcHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018283            9 MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIH   88 (358)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I~   88 (358)
                      ||||++.      ++++++++|++||++|++++++.++..||||||.+|||||||+|||+++|.+||+++|+..|++.|+
T Consensus         1 mgc~~~~------~~~~~~~~s~~Id~~l~~~~~~~~~~~killlG~~~SGKST~~kq~~i~~~~~~~~~e~~~~~~~i~   74 (362)
T 1zcb_A            1 MGCTLSA------EDKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIY   74 (362)
T ss_dssp             ------------------------------------CCCEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHH
T ss_pred             CCCCCCH------HHHHHHHHHHHHHHHHHHhHHHhcCccEEEEECCCCCcHHHHHHHHHHHhCCCCCcccHHHHHHHHH
Confidence            8974432      4677899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhccccccccccccCcchHHHHHHHhhccCC--------CCCccCcHHHHHHHHHhhcCCCCC--
Q 018283           89 ANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGR--------LDYPRLTKELAEDIETLWADPAIQ--  158 (358)
Q Consensus        89 ~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~lw~d~~i~--  158 (358)
                      .|++++|+.|+++|+.++++..       +|+++..++.+......        .+...| +++++.|..||+||+||  
T Consensus        75 ~n~~~s~~~il~a~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~LW~d~~iq~~  146 (362)
T 1zcb_A           75 SNVIKGMRVLVDAREKLHIPWG-------DNKNQLHGDKLMAFDTRAPMAAQGMVETRVF-LQYLPAIRALWEDSGIQNA  146 (362)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCS-------SGGGHHHHHHHHTSCSSSHHHHTTCCCHHHH-HHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCC-------CcccHHHHHHHHhhcccccccccccCcchhH-HHHHHHHHHHHCCHHHHHH
Confidence            9999999999999999987643       56777777777765442        122456 99999999999999998  


Q ss_pred             --------------------------------cceeeeeeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhh
Q 018283          159 --------------------------------DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH  206 (358)
Q Consensus       159 --------------------------------~Dil~~~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~  206 (358)
                                                      +|+++++.+|+|+.+..|      ..+++.+++||||||+++|++|.+
T Consensus       147 ~~r~~e~~l~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~~~------~~~~~~l~i~Dt~Gq~~~r~~w~~  220 (362)
T 1zcb_A          147 YDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDF------EIKNVPFKMVDVGGQRSERKRWFE  220 (362)
T ss_dssp             HHTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEEEEE------EETTEEEEEEEECC-------CTT
T ss_pred             HHhcchhhhcccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEEEEe------eeCCeEEEEEeccchhhhhhhHHH
Confidence                                            889999999999999888      777899999999999999999999


Q ss_pred             hhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccc
Q 018283          207 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQ  286 (358)
Q Consensus       207 y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~  286 (358)
                      ||++++++|||+|+|+||+++.|+.+.+++.++..+|..+++++++.++|++||+||+||+++|+..+++..+  ||+| 
T Consensus       221 ~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~--fp~y-  297 (362)
T 1zcb_A          221 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDY--FLEF-  297 (362)
T ss_dssp             SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGT--CTTC-
T ss_pred             HhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhc--Cccc-
Confidence            9999999999999999999999999999999999999999999888999999999999999999988888776  9988 


Q ss_pred             cCCCCc-ccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHHhhhhhcCCC
Q 018283          287 PVSTGK-QEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL  358 (358)
Q Consensus       287 ~~~~g~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~~~~~l~  358 (358)
                         +|. .+.+++.+|+..+|..+.+.   +  ..+.+++|+|||+|++||+++|++|.+.|++.+|++ ||+
T Consensus       298 ---~g~~~~~~e~~~~~~~~f~~l~~~---~--~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l~~-~l~  361 (362)
T 1zcb_A          298 ---EGDPHCLRDVQKFLVECFRGKRRD---Q--QQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQ-LML  361 (362)
T ss_dssp             ---CSCTTCHHHHHHHHHHHHHTTCSS---C--C--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             ---cCCCCCHHHHHHHHHHHHHHhhcc---c--CCCceEEEEEecCCchhHHHHHHHHHHHHHHHHHHh-hcc
Confidence               564 67899999999999987421   0  135689999999999999999999999999999999 985

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=100.00  E-value=6e-63  Score=470.08  Aligned_cols=289  Identities=33%  Similarity=0.549  Sum_probs=252.7

Q ss_pred             hccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcchHHH
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEI  124 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~  124 (358)
                      ++++|+||||+|+||||||+||||++|++||+++|+..|+++||.|++++|+.|+++|+.|+++..       +|+++..
T Consensus         3 ~~~~klLLLG~geSGKSTi~KQmkii~~~gfs~~e~~~~~~~i~~N~~~~~~~li~~~~~l~i~~~-------~~~~~~~   75 (340)
T 4fid_A            3 AKPITVMLLGSGESGKSTIAKQLKILFGGGFPEQERATHKSSICSNVVTCMRTLIEQSAILNHPMK-------YQPKSKE   75 (340)
T ss_dssp             -CCEEEEEEECTTSSHHHHHHHHHHHTSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCS-------CCCCSGG
T ss_pred             CCcceEEEECCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCC-------ChhhHHH
Confidence            478999999999999999999999999999999999999999999999999999999999998754       3443332


Q ss_pred             HHHHhhccCCCCCccCcHHHHHHHHHhhcCCCCC----------------------------------cceeeeeeccCc
Q 018283          125 GEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ----------------------------------DDVLYARVRTTG  170 (358)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~i~----------------------------------~Dil~~~~~T~g  170 (358)
                      +   .+..  ...+.+++++++.|.+||+||+||                                  +|+++++.+|+|
T Consensus        76 ~---~~~~--~~~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dil~~~~~TiG  150 (340)
T 4fid_A           76 F---TTED--PVTLPFSPELVGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAMEDYVPTEEDLIHNRTKTTG  150 (340)
T ss_dssp             G---SCCS--CCCSSCCTTHHHHHHHHHHSHHHHHHHHTCTTSCCCTTHHHHHHTHHHHSSTTCCCCHHHHHHSCCCCCS
T ss_pred             H---hhcc--cCCCCCCHHHHHHHHHHHcCHHHHHHHHhcccccccchhhhHHHHHHHHhcccCCccccceeecccceee
Confidence            2   2222  234679999999999999999998                                  899999999999


Q ss_pred             eeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC
Q 018283          171 VVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP  250 (358)
Q Consensus       171 i~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~  250 (358)
                      +.+..|      ..+++++++||||||+++|++|.+||++++++|||+|+|+||+++.++.+.+++.+++.+|+.+++++
T Consensus       151 i~~~~~------~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~  224 (340)
T 4fid_A          151 IHEYDF------VVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE  224 (340)
T ss_dssp             CEEEEE------ESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred             eEEEEE------EeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence            999999      88899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHH------HHHhhhcCC--CC---CC
Q 018283          251 CFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKF------EELYFQSTA--PD---RV  319 (358)
Q Consensus       251 ~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f------~~~~~~~~~--~~---~~  319 (358)
                      ++.++|++||+||+||+++|+..+++..+  ||+|    +|+.++++|.+||..+|      .++.+....  ++   ..
T Consensus       225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~--fp~y----~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~  298 (340)
T 4fid_A          225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTI--FPEY----TGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAV  298 (340)
T ss_dssp             GGTTSEEEEEEECHHHHHHHHHHSCGGGT--CTTC----CCTTCHHHHHHHHHHHHHTTSEEEESCC-------------
T ss_pred             ccCCCeEEEEEECchhhhhhcCcchHHHh--hhhh----cCCCCHHHHHHHHHHhcccccchhhhhcccccccccccccc
Confidence            99999999999999999999988888766  8888    56678999999999999      555321110  00   01


Q ss_pred             CceEEEEEeeccChhhHHHHHHHHHHHHHHhhhhhcCCC
Q 018283          320 DRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL  358 (358)
Q Consensus       320 ~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~~~~~l~  358 (358)
                      .+.+++|+|||+|+.||+.+|..|++.|++ +|+++||+
T Consensus       299 ~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~-~l~~~~~~  336 (340)
T 4fid_A          299 NEKVYTNPTNATDGSNIKRVFMLAVDVIMK-NMAANGKM  336 (340)
T ss_dssp             -CEEEEEEECTTCHHHHHHHHHHHHHHHHH-HHHHTTCC
T ss_pred             CcceEEEEEEeeCcHHHHHHHHHHHHHHHH-HHHHcCCC
Confidence            267999999999999999999999999999 99999985

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=100.00  E-value=1.5e-61  Score=464.84  Aligned_cols=314  Identities=90%  Similarity=1.365  Sum_probs=272.9

Q ss_pred             hccccEEEecCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcchHHH
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEI  124 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~~l~~~~f~~~e~~~~~~~I~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~  124 (358)
                      .+++||||||.|||||||++|||+++|.+||+++|+..|++.|+.|++++|+.|+++|+.+.++......+.++|+++..
T Consensus         7 ~~~~k~lllG~~~sGKsT~~kq~~~~~~~g~~~~e~~~~~~~i~~Ni~~~~~~ll~a~~~l~~~~~~~~~~~l~~~~~~~   86 (354)
T 2xtz_A            7 IHIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETDSAKYMLSSESIAI   86 (354)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCTTCCCHHHHHH
T ss_pred             CCceeEEEECCCCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCChhHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999998766555566678888887


Q ss_pred             HHHHhhccCCCCCccCcHHHHHHHHHhhcCCCCC----------------------------------cceeeeeeccCc
Q 018283          125 GEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ----------------------------------DDVLYARVRTTG  170 (358)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~i~----------------------------------~Dil~~~~~T~g  170 (358)
                      +..+..+....+.+.+++++++.|..||+||+||                                  +|+++++.+|+|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~D~~~~r~~T~G  166 (354)
T 2xtz_A           87 GEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINYIPTKEDVLYARVRTTG  166 (354)
T ss_dssp             HHHHHHHHHHCSSCCCCHHHHHHHHHHTTCHHHHHHHTTGGGTTCCTTHHHHHTSHHHHHSTTCCCCHHHHHHCCCCCCS
T ss_pred             HHHHHhcccccccccCCHHHHHHHHHHHCCHHHHHHHHhcchhhhhccHHHHHHHHHHHhcCCCCCCchheeeecccccc
Confidence            7777766544456789999999999999999998                                  889999999999


Q ss_pred             eeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC
Q 018283          171 VVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP  250 (358)
Q Consensus       171 i~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~  250 (358)
                      +.++.|.+.+.+..+.+.+++||||||+++|++|.+||++++++|||+|+|+|||++.++.+.+++.++..||+.+++++
T Consensus       167 i~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~  246 (354)
T 2xtz_A          167 VVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP  246 (354)
T ss_dssp             EEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG
T ss_pred             eeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc
Confidence            99999833210011679999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeec
Q 018283          251 CFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTA  330 (358)
Q Consensus       251 ~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA  330 (358)
                      ++.++|++||+||+||+++|+..+++..++|||+|.|...|+.+.++|.+|+.++|..++++++.+....+.+++|+|||
T Consensus       247 ~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA  326 (354)
T 2xtz_A          247 CFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTA  326 (354)
T ss_dssp             GGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCT
T ss_pred             ccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEe
Confidence            88899999999999999999887899999999999877777677899999999999988654443322235688899999


Q ss_pred             cChhhHHHHHHHHHHHHHHhhhhhcCCC
Q 018283          331 LDPKLVKKTFKLVDETLRRRHLFEAGLL  358 (358)
Q Consensus       331 ~d~~ni~~vf~~i~~~i~~~~~~~~~l~  358 (358)
                      +|++||+++|++|.+.|++.+|+++||+
T Consensus       327 ~d~~nV~~vF~~v~~~I~~~~l~~~~l~  354 (354)
T 2xtz_A          327 LDQKLVKKTFKLVDETLRRRNLLEAGLL  354 (354)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             ecchhHHHHHHHHHHHHHHHHHHhccCC
Confidence            9999999999999999999999999985

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.94  E-value=1.3e-26  Score=207.87  Aligned_cols=119  Identities=22%  Similarity=0.177  Sum_probs=94.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.++||||+||++|+.++..||++++++|+|+|+          ++.+++.....|+..+... ..+++|++||||
T Consensus        58 ~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di----------~~~~Sf~~i~~~~~~i~~~-~~~~~piilVgN  126 (216)
T 4dkx_A           58 EDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDI----------TNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGN  126 (216)
T ss_dssp             SSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEE
T ss_pred             cceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeec----------chhHHHHHHHHHHHHHHHh-cCCCCeEEEEee
Confidence            66779999999999999999999999999999999998          4667777777777776543 235789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+||.+++.                     ...+++.+|...                ..+.+++|||++++||+++|+.
T Consensus       127 K~Dl~~~r~---------------------V~~~e~~~~a~~----------------~~~~~~e~SAktg~nV~e~F~~  169 (216)
T 4dkx_A          127 KTDLADKRQ---------------------VSIEEGERKAKE----------------LNVMFIETSAKAGYNVKQLFRR  169 (216)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHHH----------------HTCEEEEEBTTTTBSHHHHHHH
T ss_pred             ccchHhcCc---------------------ccHHHHhhHHHH----------------hCCeeEEEeCCCCcCHHHHHHH
Confidence            999976542                     334555554221                1256889999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      |++.|..
T Consensus       170 i~~~i~~  176 (216)
T 4dkx_A          170 VAAALPG  176 (216)
T ss_dssp             HHHHC--
T ss_pred             HHHHHHh
Confidence            9988864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.91  E-value=1.5e-23  Score=181.86  Aligned_cols=134  Identities=24%  Similarity=0.352  Sum_probs=99.8

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|+....+      ...++.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.+...++..
T Consensus        45 ~~t~g~~~~~~------~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~  108 (181)
T 1fzq_A           45 TPTQGFNIKSV------QSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSA----------DRKRFEETGQELTE  108 (181)
T ss_dssp             EEETTEEEEEE------EETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETT----------CGGGHHHHHHHHHH
T ss_pred             cCcCCeEEEEE------EECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECc----------CHHHHHHHHHHHHH
Confidence            56777655445      445789999999999999999999999999999999983          55678888888888


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      ++......++|+++++||+|+.++.                       ..++..+.+.     +.   ..   ..+.+.+
T Consensus       109 ~~~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~~~~~~~-----~~---~~---~~~~~~~  154 (181)
T 1fzq_A          109 LLEEEKLSCVPVLIFANKQDLLTAA-----------------------PASEIAEGLN-----LH---TI---RDRVWQI  154 (181)
T ss_dssp             HTTCGGGTTCCEEEEEECTTSTTCC-----------------------CHHHHHHHTT-----GG---GC---CSSCEEE
T ss_pred             HHhChhhcCCCEEEEEECcCcccCC-----------------------CHHHHHHHhC-----ch---hc---cCCceEE
Confidence            8765555689999999999986431                       1122221110     00   01   1345778


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~  349 (358)
                      ++|||++++||+++|+++.+.+.+
T Consensus       155 ~~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          155 QSCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             EECCTTTCTTHHHHHHHHHHTC--
T ss_pred             EEccCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999987754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.91  E-value=2e-23  Score=176.78  Aligned_cols=134  Identities=20%  Similarity=0.307  Sum_probs=99.7

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|.....+      ...++.+.+||++|++.++..|..|+++++++|+|+|++          +.+++.....++..
T Consensus        29 ~~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~   92 (164)
T 1r8s_A           29 IPTIGFNVETV------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRERVNEAREELMR   92 (164)
T ss_dssp             CCCSSCCEEEE------ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETT----------CGGGHHHHHHHHHH
T ss_pred             cCcCceeEEEE------EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence            35666555555      567789999999999999999999999999999999984          45678888888888


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +.......+.|++||+||+|+.++.                       ...+..+.    +...    ..   ..+.+.+
T Consensus        93 ~~~~~~~~~~piilv~nK~Dl~~~~-----------------------~~~~~~~~----~~~~----~~---~~~~~~~  138 (164)
T 1r8s_A           93 MLAEDELRDAVLLVFANKQDLPNAM-----------------------NAAEITDK----LGLH----SL---RHRNWYI  138 (164)
T ss_dssp             HHTCGGGTTCEEEEEEECTTSTTCC-----------------------CHHHHHHH----TTGG----GC---SSCCEEE
T ss_pred             HHhchhhcCCeEEEEEECcCCcCCC-----------------------CHHHHHHH----hCcc----cc---cCccEEE
Confidence            8776556789999999999995421                       11111111    1000    00   1245778


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~  349 (358)
                      +++||+++.||+++|+++.+.+.+
T Consensus       139 ~~~Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          139 QATCATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHC--
T ss_pred             EEcccCCCcCHHHHHHHHHHHHhh
Confidence            899999999999999999988754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.90  E-value=2.5e-23  Score=177.24  Aligned_cols=134  Identities=19%  Similarity=0.301  Sum_probs=101.3

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|+....+      ......+.+||++|++.++..|..|+++++++|+|+|++          +..++.+...++..
T Consensus        36 ~~t~~~~~~~~------~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~   99 (171)
T 1upt_A           36 IPTIGFNVETV------TYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC----------DRDRIGISKSELVA   99 (171)
T ss_dssp             CCCSSEEEEEE------EETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT----------CCTTHHHHHHHHHH
T ss_pred             CCcCccceEEE------EECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence            45667665555      556789999999999999999999999999999999984          45678888888888


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      ++......+.|+++|+||+|+..+.                       ...+..+.+...   .     .   ..+.+.+
T Consensus       100 ~~~~~~~~~~piilv~nK~Dl~~~~-----------------------~~~~~~~~~~~~---~-----~---~~~~~~~  145 (171)
T 1upt_A          100 MLEEEELRKAILVVFANKQDMEQAM-----------------------TSSEMANSLGLP---A-----L---KDRKWQI  145 (171)
T ss_dssp             HHTCGGGTTCEEEEEEECTTSTTCC-----------------------CHHHHHHHHTGG---G-----C---TTSCEEE
T ss_pred             HHhchhhCCCEEEEEEECCCCcCCC-----------------------CHHHHHHHhCch---h-----c---cCCceEE
Confidence            8876555689999999999996431                       112211111100   0     1   1345788


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~  349 (358)
                      +++||++++||+++|+++.+.+.+
T Consensus       146 ~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          146 FKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EECcCCCCcCHHHHHHHHHHHHhh
Confidence            999999999999999999988764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.90  E-value=1.1e-22  Score=177.75  Aligned_cols=137  Identities=26%  Similarity=0.395  Sum_probs=103.9

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .+|.|+....+      +...+.+.+|||+|++.++..|..|+++++++|||+|++          +..++.+...++..
T Consensus        48 ~~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~----------~~~s~~~~~~~~~~  111 (199)
T 4bas_A           48 TATVGYNVETF------EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSS----------DHLRLCVVKSEIQA  111 (199)
T ss_dssp             CCCSSEEEEEE------EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETT----------CGGGHHHHHHHHHH
T ss_pred             ccccceeEEEE------EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC----------cHHHHHHHHHHHHH
Confidence            46777766666      678899999999999999999999999999999999984          55678788888888


Q ss_pred             HHcCCCC-------CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCC
Q 018283          246 VLKQPCF-------EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDR  318 (358)
Q Consensus       246 i~~~~~~-------~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~  318 (358)
                      ++.....       .++|++||+||+|+..+.                       ..++..+.+...+.  .        
T Consensus       112 ~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~~~~~~~~~~~--~--------  158 (199)
T 4bas_A          112 MLKHEDIRRELPGGGRVPFLFFANKMDAAGAK-----------------------TAAELVEILDLTTL--M--------  158 (199)
T ss_dssp             HHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC-----------------------CHHHHHHHHTHHHH--H--------
T ss_pred             HHhChhhhhcccccCCCCEEEEEECcCCCCCC-----------------------CHHHHHHHhcchhh--c--------
Confidence            8765222       378999999999996531                       12222222221111  0        


Q ss_pred             CCceEEEEEeeccChhhHHHHHHHHHHHHHHhh
Q 018283          319 VDRVFKIYRTTALDPKLVKKTFKLVDETLRRRH  351 (358)
Q Consensus       319 ~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~~~  351 (358)
                      ....+.+++|||++++||+++|+++.+.+.+..
T Consensus       159 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          159 GDHPFVIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             TTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             cCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            124578899999999999999999999987654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.89  E-value=6.6e-23  Score=179.58  Aligned_cols=133  Identities=18%  Similarity=0.300  Sum_probs=96.0

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|+....+      ....+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....++..
T Consensus        58 ~~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~----------~~~s~~~~~~~l~~  121 (192)
T 2b6h_A           58 IPTIGFNVETV------EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRERVQESADELQK  121 (192)
T ss_dssp             EEETTEEEEEE------EETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETT----------CGGGHHHHHHHHHH
T ss_pred             CCcCceeEEEE------EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence            46777665556      567799999999999999999999999999999999984          45678888888888


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +.......++|++||+||+|+.++.                       ..++..+.    +....    .   ..+.+.+
T Consensus       122 ~~~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~i~~~----~~~~~----~---~~~~~~~  167 (192)
T 2b6h_A          122 MLQEDELRDAVLLVFANKQDMPNAM-----------------------PVSELTDK----LGLQH----L---RSRTWYV  167 (192)
T ss_dssp             HHTCGGGTTCEEEEEEECTTSTTCC-----------------------CHHHHHHH----TTGGG----C---SSCCEEE
T ss_pred             HhcccccCCCeEEEEEECCCCCCCC-----------------------CHHHHHHH----hCccc----c---cCCceEE
Confidence            8776556689999999999995431                       11111111    10000    0   1245778


Q ss_pred             EEeeccChhhHHHHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDETLR  348 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~  348 (358)
                      +++||+++.||+++|+++.+.+.
T Consensus       168 ~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          168 QATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHTT
T ss_pred             EECcCCCcCCHHHHHHHHHHHHh
Confidence            99999999999999999988764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.89  E-value=7.4e-23  Score=178.04  Aligned_cols=136  Identities=21%  Similarity=0.322  Sum_probs=102.9

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|+....+      ....+.+.+|||+|++.++..|..|+++++++|+|+|++          +.+++.+...++..
T Consensus        51 ~~t~~~~~~~~------~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~  114 (189)
T 2x77_A           51 VPTVGVNLETL------QYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDST----------DRDRMGVAKHELYA  114 (189)
T ss_dssp             CSSTTCCEEEE------EETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETT----------CCTTHHHHHHHHHH
T ss_pred             CCCCceEEEEE------EECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCC----------CHHHHHHHHHHHHH
Confidence            45666655555      556789999999999999999999999999999999984          45678888888888


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      ++......+.|+++|+||+|+..+.                       ..++..+.+..   ..     .   ..+.+.+
T Consensus       115 ~~~~~~~~~~piilv~nK~Dl~~~~-----------------------~~~~~~~~~~~---~~-----~---~~~~~~~  160 (189)
T 2x77_A          115 LLDEDELRKSLLLIFANKQDLPDAA-----------------------SEAEIAEQLGV---SS-----I---MNRTWTI  160 (189)
T ss_dssp             HHTCSTTTTCEEEEEEECTTSTTCC-----------------------CHHHHHHHTTG---GG-----C---CSSCEEE
T ss_pred             HHhhhhcCCCeEEEEEECCCCcCCC-----------------------CHHHHHHHhCh---hh-----c---cCCceEE
Confidence            8877666789999999999996431                       11111111100   00     1   1345788


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHHhh
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRRRH  351 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~~~  351 (358)
                      +++||++++||+++|+++.+.+.+..
T Consensus       161 ~~~Sa~~~~gi~~l~~~l~~~i~~~~  186 (189)
T 2x77_A          161 VKSSSKTGDGLVEGMDWLVERLREQG  186 (189)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred             EEccCCCccCHHHHHHHHHHHHHhcc
Confidence            99999999999999999999887653

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.89  E-value=7.6e-23  Score=180.17  Aligned_cols=130  Identities=18%  Similarity=0.324  Sum_probs=88.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ...++.+.+|||+|++.++..|..||++++++|+|+|+          ++..++.+...++..+.......++|+++|+|
T Consensus        65 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N  134 (198)
T 1f6b_A           65 TIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDC----------ADHERLLESKEELDSLMTDETIANVPILILGN  134 (198)
T ss_dssp             EETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEE
T ss_pred             EECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhCcccCCCcEEEEEE
Confidence            34458999999999999999999999999999999998          35677888888888887765556899999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcC--CCCCCCceEEEEEeeccChhhHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST--APDRVDRVFKIYRTTALDPKLVKKTF  340 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~--~~~~~~~~~~~~~tSA~d~~ni~~vf  340 (358)
                      |+|+.++                       ...+++.+++....... ....  -.....+.+.+++|||++++||+++|
T Consensus       135 K~Dl~~~-----------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~  190 (198)
T 1f6b_A          135 KIDRPEA-----------------------ISEERLREMFGLYGQTT-GKGSVSLKELNARPLEVFMCSVLKRQGYGEGF  190 (198)
T ss_dssp             CTTSTTC-----------------------CCHHHHHHHHTCTTTCC-CSSCCCTTTCCSCCEEEEECBTTTTBSHHHHH
T ss_pred             CCCcccc-----------------------CCHHHHHHHhCcccccc-cccccccccccCceEEEEEEECCCCCCHHHHH
Confidence            9999641                       11222222211100000 0000  00001245788999999999999999


Q ss_pred             HHHHHH
Q 018283          341 KLVDET  346 (358)
Q Consensus       341 ~~i~~~  346 (358)
                      +++.+.
T Consensus       191 ~~l~~~  196 (198)
T 1f6b_A          191 RWMAQY  196 (198)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            998754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=2e-22  Score=175.09  Aligned_cols=133  Identities=20%  Similarity=0.307  Sum_probs=96.6

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .+|.|+....+      ..+++.+.+|||+|++.++..|..|+++++++|+|+|++          +.+++.+...++..
T Consensus        45 ~~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~  108 (187)
T 1zj6_A           45 SPTIGSNVEEI------VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST----------DRERISVTREELYK  108 (187)
T ss_dssp             ECCSCSSCEEE------EETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETT----------CTTTHHHHHHHHHH
T ss_pred             cCCCccceEEE------EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCC----------CHHHHHHHHHHHHH
Confidence            46666555555      456799999999999999999999999999999999984          45678888888888


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +.......+.|+++|+||+|+.++                       ...++..+++...   .+        ....+.+
T Consensus       109 ~~~~~~~~~~piilv~NK~Dl~~~-----------------------~~~~~i~~~~~~~---~~--------~~~~~~~  154 (187)
T 1zj6_A          109 MLAHEDLRKAGLLIFANKQDVKEC-----------------------MTVAEISQFLKLT---SI--------KDHQWHI  154 (187)
T ss_dssp             HHTSGGGTTCEEEEEEECTTSTTC-----------------------CCHHHHHHHHTGG---GC--------CSSCEEE
T ss_pred             HHhchhhCCCeEEEEEECCCCcCC-----------------------CCHHHHHHHhChh---hh--------cCCCcEE
Confidence            877644568999999999999642                       1122222221110   00        1345788


Q ss_pred             EEeeccChhhHHHHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDETLR  348 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~  348 (358)
                      +++||++++||+++|+++.+.+.
T Consensus       155 ~~~Sa~~g~gi~~l~~~l~~~~~  177 (187)
T 1zj6_A          155 QACCALTGEGLCQGLEWMMSRLK  177 (187)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHC
T ss_pred             EEccCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999999998764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.89  E-value=4.3e-22  Score=171.79  Aligned_cols=135  Identities=19%  Similarity=0.307  Sum_probs=97.8

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .+|.|+....+      ...+..+.+||++|++.++..|..|+++++++|+|+|++          +..++.+...++..
T Consensus        47 ~~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~  110 (183)
T 1moz_A           47 KPTIGFNVETL------SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDST----------DKDRMSTASKELHL  110 (183)
T ss_dssp             CSSTTCCEEEE------EETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETT----------CTTTHHHHHHHHHH
T ss_pred             CCcCccceEEE------EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence            46666555455      445689999999999999999999999999999999984          45778888888888


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +.......++|+++|+||+|+.++                       ...++..+++.     .   ...   ..+.+.+
T Consensus       111 ~~~~~~~~~~piilv~nK~Dl~~~-----------------------~~~~~i~~~~~-----~---~~~---~~~~~~~  156 (183)
T 1moz_A          111 MLQEEELQDAALLVFANKQDQPGA-----------------------LSASEVSKELN-----L---VEL---KDRSWSI  156 (183)
T ss_dssp             HTTSSTTSSCEEEEEEECTTSTTC-----------------------CCHHHHHHHTT-----T---TTC---CSSCEEE
T ss_pred             HHcChhhCCCeEEEEEECCCCCCC-----------------------CCHHHHHHHhC-----c---ccc---cCCceEE
Confidence            877655568999999999998642                       11122222111     0   000   1345778


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHHh
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRRR  350 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~~  350 (358)
                      +++||++++||+++|+++.+.+.++
T Consensus       157 ~~~Sa~~~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          157 VASSAIKGEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             EEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             EEccCCCCcCHHHHHHHHHHHHHhc
Confidence            9999999999999999999988754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.89  E-value=2.1e-22  Score=174.53  Aligned_cols=135  Identities=18%  Similarity=0.297  Sum_probs=102.4

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|.....+      ...+..+.+|||+|++.++..|..|+++++++|+|+|++          +..++.+...++..
T Consensus        47 ~~t~~~~~~~~------~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~  110 (186)
T 1ksh_A           47 SPTLGFNIKTL------EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA----------DRQRMQDCQRELQS  110 (186)
T ss_dssp             CCCSSEEEEEE------EETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT----------CGGGHHHHHHHHHH
T ss_pred             cccCccceEEE------EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHH
Confidence            46667665555      456789999999999999999999999999999999984          55678888888888


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      ++......+.|+++|+||+|+..+.                       ..++..+++..   ..     .   ....+.+
T Consensus       111 ~~~~~~~~~~piilv~nK~Dl~~~~-----------------------~~~~~~~~~~~---~~-----~---~~~~~~~  156 (186)
T 1ksh_A          111 LLVEERLAGATLLIFANKQDLPGAL-----------------------SCNAIQEALEL---DS-----I---RSHHWRI  156 (186)
T ss_dssp             HHTCGGGTTCEEEEEEECTTSTTCC-----------------------CHHHHHHHTTG---GG-----C---CSSCEEE
T ss_pred             HHhChhcCCCcEEEEEeCccCCCCC-----------------------CHHHHHHHhCh---hh-----c---cCCceEE
Confidence            8876555689999999999996431                       11222221110   00     0   1345788


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHHh
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRRR  350 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~~  350 (358)
                      +++||++++||+++|+++.+.+.+.
T Consensus       157 ~~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          157 QGCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999988654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.89  E-value=2.1e-22  Score=177.68  Aligned_cols=121  Identities=19%  Similarity=0.205  Sum_probs=91.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+.... ..++|++||+|
T Consensus        74 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~N  142 (201)
T 2hup_A           74 QGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDIT----------KRSSFLSVPHWIEDVRKYA-GSNIVQLLIGN  142 (201)
T ss_dssp             TTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETT----------BHHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred             CCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCCEEEEEE
Confidence            445689999999999999999999999999999999984          4455666666666665432 35789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE-EEEEeeccChhhHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~d~~ni~~vf~  341 (358)
                      |+|+..++.                     ...+++.++...                ..+ .+++|||++++||+++|+
T Consensus       143 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~~SA~~g~gi~~l~~  185 (201)
T 2hup_A          143 KSDLSELRE---------------------VSLAEAQSLAEH----------------YDILCAIETSAKDSSNVEEAFL  185 (201)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHHH----------------TTCSEEEECBTTTTBSHHHHHH
T ss_pred             CCccccccc---------------------cCHHHHHHHHHH----------------cCCCEEEEEeCCCCCCHHHHHH
Confidence            999975421                     223444443211                124 678999999999999999


Q ss_pred             HHHHHHHHhh
Q 018283          342 LVDETLRRRH  351 (358)
Q Consensus       342 ~i~~~i~~~~  351 (358)
                      ++.+.+.+..
T Consensus       186 ~l~~~i~~~~  195 (201)
T 2hup_A          186 RVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999997653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.89  E-value=2.9e-22  Score=175.17  Aligned_cols=137  Identities=15%  Similarity=0.211  Sum_probs=96.0

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  246 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i  246 (358)
                      +|.|.....+      ...++.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.+...++..+
T Consensus        53 ~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~  116 (190)
T 1m2o_B           53 PTWHPTSEEL------AIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA----------DPERFDEARVELDAL  116 (190)
T ss_dssp             CCCSCEEEEE------EETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETT----------CGGGHHHHHHHHHHH
T ss_pred             cCCCCCeEEE------EECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECC----------ChHHHHHHHHHHHHH
Confidence            4555544444      445689999999999999999999999999999999984          566788888888888


Q ss_pred             HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283          247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY  326 (358)
Q Consensus       247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~  326 (358)
                      .......+.|+++++||+|+.++                       ...+++.+++....    ....+.-...+.+.++
T Consensus       117 ~~~~~~~~~piilv~NK~Dl~~~-----------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  169 (190)
T 1m2o_B          117 FNIAELKDVPFVILGNKIDAPNA-----------------------VSEAELRSALGLLN----TTGSQRIEGQRPVEVF  169 (190)
T ss_dssp             HTCGGGTTCCEEEEEECTTSTTC-----------------------CCHHHHHHHTTCSS----CCC---CCSSCCEEEE
T ss_pred             HcchhhcCCCEEEEEECCCCcCC-----------------------CCHHHHHHHhCCcc----ccccccccccceEEEE
Confidence            77655568999999999999641                       11122221110000    0000000012457789


Q ss_pred             EeeccChhhHHHHHHHHHHH
Q 018283          327 RTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       327 ~tSA~d~~ni~~vf~~i~~~  346 (358)
                      ++||++++||+++|+++.+.
T Consensus       170 ~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          170 MCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             ECBTTTTBSHHHHHHHHHTT
T ss_pred             EeECCcCCCHHHHHHHHHhh
Confidence            99999999999999998753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.89  E-value=1.7e-22  Score=174.79  Aligned_cols=131  Identities=20%  Similarity=0.294  Sum_probs=97.7

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .+|.|+....+      ..+++.+.+||++|++.++..|..|+++++++|||+|++          +..++.+...++..
T Consensus        50 ~~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~----------~~~s~~~~~~~~~~  113 (181)
T 2h17_A           50 SPTIGSNVEEI------VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST----------DRERISVTREELYK  113 (181)
T ss_dssp             ECCSSSSCEEE------EETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETT----------CTTTHHHHHHHHHH
T ss_pred             CCcCceeeEEE------EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence            45666555455      456689999999999999999999999999999999984          45678888888888


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +.......+.|+++|+||+|+..+                       ...++..+++...   .     .   ....+.+
T Consensus       114 ~~~~~~~~~~piilv~NK~Dl~~~-----------------------~~~~~i~~~~~~~---~-----~---~~~~~~~  159 (181)
T 2h17_A          114 MLAHEDLRKAGLLIFANKQDVKEC-----------------------MTVAEISQFLKLT---S-----I---KDHQWHI  159 (181)
T ss_dssp             HHTCGGGTTCEEEEEEECTTSTTC-----------------------CCHHHHHHHTTGG---G-----C---CSSCEEE
T ss_pred             HHhChhhCCCeEEEEEECCCcccC-----------------------CCHHHHHHHhCcc---c-----c---cCCceEE
Confidence            877544568999999999999642                       1112222221100   0     0   1345788


Q ss_pred             EEeeccChhhHHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~  346 (358)
                      +++||++++||+++|+++.+.
T Consensus       160 ~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          160 QACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             EECBTTTTBTHHHHHHHHHTC
T ss_pred             EEccCCCCcCHHHHHHHHHhh
Confidence            999999999999999998754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.88  E-value=5.6e-22  Score=172.71  Aligned_cols=133  Identities=23%  Similarity=0.419  Sum_probs=100.1

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .+|.|+....+      ...++.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.+...++..
T Consensus        52 ~~t~~~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~  115 (190)
T 2h57_A           52 LPTIGFSIEKF------KSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSS----------DRLRMVVAKEELDT  115 (190)
T ss_dssp             CCCSSEEEEEE------ECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETT----------CHHHHHHHHHHHHH
T ss_pred             CCccceeEEEE------EECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence            35667665555      555689999999999999999999999999999999983          45677788888888


Q ss_pred             HHcCCCC--CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE
Q 018283          246 VLKQPCF--EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF  323 (358)
Q Consensus       246 i~~~~~~--~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~  323 (358)
                      +......  .++|+++|+||+|+.++                       ...++..+++..  ..+         ..+.+
T Consensus       116 ~~~~~~~~~~~~piilv~nK~Dl~~~-----------------------~~~~~~~~~~~~--~~~---------~~~~~  161 (190)
T 2h57_A          116 LLNHPDIKHRRIPILFFANKMDLRDA-----------------------VTSVKVSQLLCL--ENI---------KDKPW  161 (190)
T ss_dssp             HHHSTTTTTSCCCEEEEEECTTSTTC-----------------------CCHHHHHHHHTG--GGC---------CSSCE
T ss_pred             HHhChhhccCCCeEEEEEeCcCcccC-----------------------CCHHHHHHHhCh--hhc---------cCCce
Confidence            8776554  67899999999999642                       112333332210  000         12457


Q ss_pred             EEEEeeccChhhHHHHHHHHHHHHH
Q 018283          324 KIYRTTALDPKLVKKTFKLVDETLR  348 (358)
Q Consensus       324 ~~~~tSA~d~~ni~~vf~~i~~~i~  348 (358)
                      .++++||++++||+++|+++.+.+.
T Consensus       162 ~~~~~Sa~~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          162 HICASDAIKGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred             EEEEccCCCCcCHHHHHHHHHHHHH
Confidence            8899999999999999999988764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.88  E-value=3.2e-22  Score=174.25  Aligned_cols=134  Identities=19%  Similarity=0.299  Sum_probs=99.9

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .+|.|.....+      ....+.+.+||++|++.++..|..|+++++++|||+|++          +..++.....++..
T Consensus        52 ~~t~~~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~----------~~~s~~~~~~~~~~  115 (188)
T 1zd9_A           52 IPTVGFNMRKI------TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA----------DQEKIEASKNELHN  115 (188)
T ss_dssp             CCCCSEEEEEE------EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETT----------CGGGHHHHHHHHHH
T ss_pred             CCCCceeEEEE------EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence            35666665556      667899999999999999999999999999999999984          45678888888888


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      ++......+.|++||+||+|+..+.                       ...+..+.    +....    .   ....+.+
T Consensus       116 ~~~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~~~~~----~~~~~----~---~~~~~~~  161 (188)
T 1zd9_A          116 LLDKPQLQGIPVLVLGNKRDLPGAL-----------------------DEKELIEK----MNLSA----I---QDREICC  161 (188)
T ss_dssp             HHTCGGGTTCCEEEEEECTTSTTCC-----------------------CHHHHHHH----TTGGG----C---CSSCEEE
T ss_pred             HHhCcccCCCCEEEEEECCCCccCC-----------------------CHHHHHHH----hChhh----h---ccCCeeE
Confidence            8776545689999999999996421                       11111111    10000    0   1234678


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~  349 (358)
                      +++||+++.||+++|+++.+.+.+
T Consensus       162 ~~~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          162 YSISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             EECCTTTCTTHHHHHHHHHHTCC-
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHh
Confidence            899999999999999999887643

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.88  E-value=5.7e-22  Score=172.62  Aligned_cols=124  Identities=19%  Similarity=0.176  Sum_probs=92.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+|||+|++.++..|..|+++++++|+|+|+++...    ..+...+.....|+..+.  ....++|++||+|
T Consensus        70 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~----~~~~~s~~~l~~~l~~~~--~~~~~~piilv~N  143 (198)
T 3t1o_A           70 KGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRL----RANAESMRNMRENLAEYG--LTLDDVPIVIQVN  143 (198)
T ss_dssp             SSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGH----HHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEE
T ss_pred             cCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchh----hHhHHHHHHHHHHHHhhc--cccCCCCEEEEEE
Confidence            5567899999999999999999999999999999999852100    013455666666666652  3346899999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE-EEEEeeccChhhHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~d~~ni~~vf~  341 (358)
                      |+|+.++                       ...+++.++..                ...+ .++++||++++||+++|+
T Consensus       144 K~Dl~~~-----------------------~~~~~~~~~~~----------------~~~~~~~~~~Sa~~~~gv~~l~~  184 (198)
T 3t1o_A          144 KRDLPDA-----------------------LPVEMVRAVVD----------------PEGKFPVLEAVATEGKGVFETLK  184 (198)
T ss_dssp             CTTSTTC-----------------------CCHHHHHHHHC----------------TTCCSCEEECBGGGTBTHHHHHH
T ss_pred             chhcccc-----------------------cCHHHHHHHHH----------------hcCCceEEEEecCCCcCHHHHHH
Confidence            9998543                       22344443311                1234 678999999999999999


Q ss_pred             HHHHHHHHhh
Q 018283          342 LVDETLRRRH  351 (358)
Q Consensus       342 ~i~~~i~~~~  351 (358)
                      ++.+.+++..
T Consensus       185 ~l~~~i~~~~  194 (198)
T 3t1o_A          185 EVSRLVLARV  194 (198)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.88  E-value=4.1e-22  Score=172.05  Aligned_cols=123  Identities=14%  Similarity=0.171  Sum_probs=79.1

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+... ...++|++||+|
T Consensus        53 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~piilv~n  121 (183)
T 2fu5_C           53 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDIT----------NEKSFDNIRNWIRNIEEH-ASADVEKMILGN  121 (183)
T ss_dssp             TTEEEEEEEEEC---------CCTTTTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred             CCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence            455689999999999999999999999999999999984          345666666666666542 224789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++.++...                ..+.+++|||++++||+++|++
T Consensus       122 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~  164 (183)
T 2fu5_C          122 KCDVNDKRQ---------------------VSKERGEKLALD----------------YGIKFMETSAKANINVENAFFT  164 (183)
T ss_dssp             C--CCSCCC---------------------SCHHHHHHHHHH----------------HTCEEEECCC---CCHHHHHHH
T ss_pred             CccCCccCc---------------------CCHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence            999964321                     223444443211                1256889999999999999999


Q ss_pred             HHHHHHHhhhh
Q 018283          343 VDETLRRRHLF  353 (358)
Q Consensus       343 i~~~i~~~~~~  353 (358)
                      +.+.+.+...+
T Consensus       165 l~~~i~~~~~~  175 (183)
T 2fu5_C          165 LARDIKAKMDK  175 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999876544

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.87  E-value=1.4e-21  Score=165.78  Aligned_cols=121  Identities=17%  Similarity=0.114  Sum_probs=78.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+.......++|+++|+|
T Consensus        45 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n  114 (166)
T 3q72_A           45 DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVT----------DKGSFEKASELRVQLRRARQTDDVPIILVGN  114 (166)
T ss_dssp             TTEEEEEEEEECC---------------CCEEEEEEETT----------CHHHHHHHHHHHHHHHHCC---CCCEEEEEE
T ss_pred             CCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence            667789999999999999999999999999999999984          5567778888888887665556899999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..+..                ...+.++++||++++||+++|++
T Consensus       115 K~Dl~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~l~~~  157 (166)
T 3q72_A          115 KSDLVRSRE---------------------VSVDEGRACAV----------------VFDCKFIETSAALHHNVQALFEG  157 (166)
T ss_dssp             CTTCCSSCC---------------------SCHHHHHHHHH----------------HTTCEEEECBGGGTBSHHHHHHH
T ss_pred             ccccccccc---------------------cCHHHHHHHHH----------------HhCCcEEEeccCCCCCHHHHHHH
Confidence            999864321                     22233333211                11256889999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+...
T Consensus       158 l~~~~~~~  165 (166)
T 3q72_A          158 VVRQIRLR  165 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99988653

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.87  E-value=1e-21  Score=171.36  Aligned_cols=121  Identities=15%  Similarity=0.199  Sum_probs=91.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+.... ..+.|++||+|
T Consensus        66 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~l~~i~~~~-~~~~piilv~n  134 (191)
T 2a5j_A           66 DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLTSWLEDARQHS-SSNMVIMLIGN  134 (191)
T ss_dssp             TTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred             CCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCCEEEEEE
Confidence            556689999999999999999999999999999999984          3455555566666664422 24789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..+...                ..+.++++||++++||+++|++
T Consensus       135 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~  177 (191)
T 2a5j_A          135 KSDLESRRD---------------------VKREEGEAFARE----------------HGLIFMETSAKTACNVEEAFIN  177 (191)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHHH----------------HTCEEEEECTTTCTTHHHHHHH
T ss_pred             CcccCCccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence            999965421                     123344433211                1256789999999999999999


Q ss_pred             HHHHHHHhh
Q 018283          343 VDETLRRRH  351 (358)
Q Consensus       343 i~~~i~~~~  351 (358)
                      +.+.+.++.
T Consensus       178 l~~~i~~~~  186 (191)
T 2a5j_A          178 TAKEIYRKI  186 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.87  E-value=8e-22  Score=173.65  Aligned_cols=121  Identities=15%  Similarity=0.161  Sum_probs=91.1

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+.... ..++|++||+|
T Consensus        70 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piilv~n  138 (200)
T 2o52_A           70 GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT----------SRETYNSLAAWLTDARTLA-SPNIVVILCGN  138 (200)
T ss_dssp             TTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHT-CTTCEEEEEEE
T ss_pred             CCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence            455689999999999999999999999999999999984          3455555566666654322 24789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ....++..+...                ..+.++++||++++||+++|++
T Consensus       139 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~SA~~g~gi~~l~~~  181 (200)
T 2o52_A          139 KKDLDPERE---------------------VTFLEASRFAQE----------------NELMFLETSALTGENVEEAFLK  181 (200)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEEECTTTCTTHHHHHHH
T ss_pred             CCCcccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence            999965421                     223444443211                2257889999999999999999


Q ss_pred             HHHHHHHhh
Q 018283          343 VDETLRRRH  351 (358)
Q Consensus       343 i~~~i~~~~  351 (358)
                      +.+.+++..
T Consensus       182 l~~~i~~~~  190 (200)
T 2o52_A          182 CARTILNKI  190 (200)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988643

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.87  E-value=1.7e-21  Score=167.03  Aligned_cols=121  Identities=18%  Similarity=0.193  Sum_probs=85.1

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC-CCCCCCc-EEEEee
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTS-FMLFLN  262 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~-~~~~~~~-iilv~N  262 (358)
                      ..+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.+...|+..+... +...+.| ++||+|
T Consensus        54 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~n  123 (178)
T 2hxs_A           54 LNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDIT----------NYQSFENLEDWYTVVKKVSEESETQPLVALVGN  123 (178)
T ss_dssp             EEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred             CEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEE
Confidence            4589999999999999999999999999999999985          333444444444443321 0011344 899999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..+...                ..+.++++||++++||+++|++
T Consensus       124 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~  166 (178)
T 2hxs_A          124 KIDLEHMRT---------------------IKPEKHLRFCQE----------------NGFSSHFVSAKTGDSVFLCFQK  166 (178)
T ss_dssp             CGGGGGGCS---------------------SCHHHHHHHHHH----------------HTCEEEEECTTTCTTHHHHHHH
T ss_pred             ccccccccc---------------------cCHHHHHHHHHH----------------cCCcEEEEeCCCCCCHHHHHHH
Confidence            999975421                     122334333211                1256789999999999999999


Q ss_pred             HHHHHHHhhh
Q 018283          343 VDETLRRRHL  352 (358)
Q Consensus       343 i~~~i~~~~~  352 (358)
                      +.+.+.+..+
T Consensus       167 l~~~~~~~~~  176 (178)
T 2hxs_A          167 VAAEILGIKL  176 (178)
T ss_dssp             HHHHHTTCCC
T ss_pred             HHHHHHhhhh
Confidence            9998876543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.87  E-value=3.6e-21  Score=169.37  Aligned_cols=122  Identities=14%  Similarity=0.144  Sum_probs=91.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.....|+..+.......++|++||+|
T Consensus        68 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  137 (201)
T 3oes_A           68 GKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVT----------SLHSFQVIESLYQKLHEGHGKTRVPVVLVGN  137 (201)
T ss_dssp             ---CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETT----------CHHHHHHHHHHHHHHHC-----CCCEEEEEE
T ss_pred             CCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            456789999999999999999999999999999999984          5567777778888877655556789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ....++..+.. .               ..+.++++||+++.||+++|++
T Consensus       138 K~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~~v~~l~~~  180 (201)
T 3oes_A          138 KADLSPERE---------------------VQAVEGKKLAE-S---------------WGATFMESSARENQLTQGIFTK  180 (201)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHH-H---------------HTCEEEECCTTCHHHHHHHHHH
T ss_pred             CccCccccc---------------------cCHHHHHHHHH-H---------------hCCeEEEEeCCCCCCHHHHHHH
Confidence            999975431                     22233333321 1               1256789999999999999999


Q ss_pred             HHHHHHHhh
Q 018283          343 VDETLRRRH  351 (358)
Q Consensus       343 i~~~i~~~~  351 (358)
                      +.+.+.+..
T Consensus       181 l~~~i~~~~  189 (201)
T 3oes_A          181 VIQEIARVE  189 (201)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHhhh
Confidence            999987653

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.87  E-value=2.3e-21  Score=166.48  Aligned_cols=124  Identities=17%  Similarity=0.226  Sum_probs=79.4

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHH---cCCCCCCCcEEEE
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL---KQPCFEKTSFMLF  260 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~---~~~~~~~~~iilv  260 (358)
                      ...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+.   ......+.|+++|
T Consensus        55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv  124 (182)
T 1ky3_A           55 DKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVT----------NASSFENIKSWRDEFLVHANVNSPETFPFVIL  124 (182)
T ss_dssp             SCCEEEEEECCC----------CCSTTCCEEEEEEETT----------CHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEE
T ss_pred             CcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECC----------ChHHHHHHHHHHHHHHHHhcccCcCCCcEEEE
Confidence            45688999999999999999999999999999999985          3344444444444443   3233457899999


Q ss_pred             eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283          261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF  340 (358)
Q Consensus       261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf  340 (358)
                      +||+|+..+.-.                    ...+++..+...               ...+.++++||++++||+++|
T Consensus       125 ~nK~Dl~~~~~~--------------------v~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~gi~~l~  169 (182)
T 1ky3_A          125 GNKIDAEESKKI--------------------VSEKSAQELAKS---------------LGDIPLFLTSAKNAINVDTAF  169 (182)
T ss_dssp             EECTTSCGGGCC--------------------SCHHHHHHHHHH---------------TTSCCEEEEBTTTTBSHHHHH
T ss_pred             EECCcccccccc--------------------CCHHHHHHHHHh---------------cCCCeEEEEecCCCCCHHHHH
Confidence            999999543210                    123344333211               112457889999999999999


Q ss_pred             HHHHHHHHHhhh
Q 018283          341 KLVDETLRRRHL  352 (358)
Q Consensus       341 ~~i~~~i~~~~~  352 (358)
                      +++.+.+++.+.
T Consensus       170 ~~l~~~~~~~~~  181 (182)
T 1ky3_A          170 EEIARSALQQNQ  181 (182)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhc
Confidence            999999987653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.87  E-value=3.1e-21  Score=166.23  Aligned_cols=122  Identities=13%  Similarity=0.083  Sum_probs=91.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+.......++|++||+|
T Consensus        50 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n  119 (181)
T 3t5g_A           50 NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVT----------SIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN  119 (181)
T ss_dssp             TTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHC----CCEEEEEE
T ss_pred             CCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            556688999999999999999999999999999999984          4566777777777776544445789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..+...                ..+.++++||++++||.++|+.
T Consensus       120 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A          120 KKDLHMERV---------------------ISYEEGKALAES----------------WNAAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             CTTCTTTCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTSHHHHHHHHHH
T ss_pred             Cccchhcce---------------------ecHHHHHHHHHH----------------hCCcEEEEecCCCCCHHHHHHH
Confidence            999864321                     223444433211                1256888999999999999999


Q ss_pred             HHHHHHHhh
Q 018283          343 VDETLRRRH  351 (358)
Q Consensus       343 i~~~i~~~~  351 (358)
                      +.+.+...+
T Consensus       163 l~~~~~~~~  171 (181)
T 3t5g_A          163 IILEAEKMD  171 (181)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHHHhc
Confidence            999987543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.86  E-value=2.8e-21  Score=164.33  Aligned_cols=120  Identities=13%  Similarity=0.102  Sum_probs=86.4

Q ss_pred             cccceEEEEEecCCCchhhh-hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERR-KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~-~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+||++|++.++. .|..|+++++++|+|+|++          +..++.....|+..+.......++|+++|+
T Consensus        47 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~  116 (169)
T 3q85_A           47 DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVT----------DRRSFSKVPETLLRLRAGRPHHDLPVILVG  116 (169)
T ss_dssp             TTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred             CCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECC----------ChHHHHHHHHHHHHHHhcccCCCCCEEEEe
Confidence            56678999999999999987 8888999999999999984          456677777777777665444579999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+.+++.                     ...+++..+..                ...+.++++||++++||+++|+
T Consensus       117 nK~Dl~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~~v~~l~~  159 (169)
T 3q85_A          117 NKSDLARSRE---------------------VSLEEGRHLAG----------------TLSCKHIETSAALHHNTRELFE  159 (169)
T ss_dssp             ECTTCGGGCC---------------------SCHHHHHHHHH----------------HTTCEEEECBTTTTBSHHHHHH
T ss_pred             eCcchhhccc---------------------CCHHHHHHHHH----------------HcCCcEEEecCccCCCHHHHHH
Confidence            9999975421                     22333333311                1125678999999999999999


Q ss_pred             HHHHHHHH
Q 018283          342 LVDETLRR  349 (358)
Q Consensus       342 ~i~~~i~~  349 (358)
                      ++.+.+..
T Consensus       160 ~l~~~i~~  167 (169)
T 3q85_A          160 GAVRQIRL  167 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998865

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.86  E-value=1.4e-21  Score=167.63  Aligned_cols=123  Identities=21%  Similarity=0.287  Sum_probs=93.1

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+...  ..+.|++||+|
T Consensus        54 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~ilv~n  121 (181)
T 3tw8_B           54 NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT----------SAESFVNVKRWLHEINQN--CDDVCRILVGN  121 (181)
T ss_dssp             TTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHH--CTTSEEEEEEE
T ss_pred             CCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence            455689999999999999999999999999999999984          445666666666666543  24789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ....++..+...                ..+.++++||+++.||+++|++
T Consensus       122 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~  164 (181)
T 3tw8_B          122 KNDDPERKV---------------------VETEDAYKFAGQ----------------MGIQLFETSAKENVNVEEMFNC  164 (181)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHHH----------------HTCCEEECBTTTTBSHHHHHHH
T ss_pred             CCCCchhcc---------------------cCHHHHHHHHHH----------------cCCeEEEEECCCCCCHHHHHHH
Confidence            999876432                     222333333211                1245788999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 018283          343 VDETLRRRHLFE  354 (358)
Q Consensus       343 i~~~i~~~~~~~  354 (358)
                      +.+.+.+...++
T Consensus       165 l~~~~~~~~~~~  176 (181)
T 3tw8_B          165 ITELVLRAKKDN  176 (181)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhh
Confidence            999998765544

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=172.14  Aligned_cols=121  Identities=14%  Similarity=0.119  Sum_probs=90.9

Q ss_pred             cccceEEEEEecCCCchhhh-hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERR-KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~-~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+||++|++.++. +|..||++++++|+|+|++          +..++.....|+..+.......++|++||+
T Consensus        68 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~  137 (195)
T 3cbq_A           68 DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVT----------DRRSFSKVPETLLRLRAGRPHHDLPVILVG  137 (195)
T ss_dssp             TTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred             CCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence            56678999999999998875 8899999999999999984          455666666777776553333578999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+..++.                     ...+++..+.. .               ..+.++++||+++.||+++|+
T Consensus       138 nK~Dl~~~~~---------------------v~~~~~~~~a~-~---------------~~~~~~e~Sa~~~~~v~~lf~  180 (195)
T 3cbq_A          138 NKSDLARSRE---------------------VSLEEGRHLAG-T---------------LSCKHIETSAALHHNTRELFE  180 (195)
T ss_dssp             ECTTCTTTCC---------------------SCHHHHHHHHH-H---------------TTCEEEEEBTTTTBSHHHHHH
T ss_pred             echhccccCC---------------------cCHHHHHHHHH-H---------------hCCEEEEEcCCCCCCHHHHHH
Confidence            9999965321                     22344443311 1               124678999999999999999


Q ss_pred             HHHHHHHHh
Q 018283          342 LVDETLRRR  350 (358)
Q Consensus       342 ~i~~~i~~~  350 (358)
                      ++.+.+...
T Consensus       181 ~l~~~i~~~  189 (195)
T 3cbq_A          181 GAVRQIRLR  189 (195)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHh
Confidence            999988654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.86  E-value=3.9e-21  Score=167.66  Aligned_cols=122  Identities=16%  Similarity=0.183  Sum_probs=93.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++|++.++..|..|+++++++|||+|++          +..++.....|+..+.... ..+.|++||+|
T Consensus        70 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~----------~~~s~~~~~~~l~~i~~~~-~~~~piilv~n  138 (193)
T 2oil_A           70 GTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLT----------KHQTYAVVERWLKELYDHA-EATIVVMLVGN  138 (193)
T ss_dssp             TTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETT----------CHHHHHTHHHHHHHHHTTS-CTTCEEEEEEE
T ss_pred             CCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCeEEEEEE
Confidence            456789999999999999999999999999999999984          3455666666777765532 35789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..+...                ..+.++++||++++||+++|++
T Consensus       139 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~  181 (193)
T 2oil_A          139 KSDLSQARE---------------------VPTEEARMFAEN----------------NGLLFLETSALDSTNVELAFET  181 (193)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEEECTTTCTTHHHHHHH
T ss_pred             CCCcccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence            999975421                     123344433211                1256788999999999999999


Q ss_pred             HHHHHHHhhh
Q 018283          343 VDETLRRRHL  352 (358)
Q Consensus       343 i~~~i~~~~~  352 (358)
                      +.+.++++..
T Consensus       182 l~~~i~~~~~  191 (193)
T 2oil_A          182 VLKEIFAKVS  191 (193)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999987543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.86  E-value=1.7e-22  Score=190.45  Aligned_cols=140  Identities=16%  Similarity=0.159  Sum_probs=87.0

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhh---hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERR---KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKEL  242 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~---~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~  242 (358)
                      .||.|+....+      + ..+++++||||||++|++   .|..||++++++|||+|+++        ...+.+..+.++
T Consensus        32 ~~Tig~~~~~v------~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd--------~~~~~~~~l~~~   96 (331)
T 3r7w_B           32 ESTSNPSLEHF------S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD--------EYINAITNLAMI   96 (331)
T ss_dssp             CCCCSCCCEEE------C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSS--------CTTHHHHHHHHH
T ss_pred             cCeeeeeeEEE------c-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCc--------hHHHHHHHHHHH
Confidence            47778766555      3 348999999999999975   46999999999999999852        111222223333


Q ss_pred             HHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCce
Q 018283          243 FDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRV  322 (358)
Q Consensus       243 ~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~  322 (358)
                      +..+..  ..+++|++|++||+||..+.-+....  +    +        ...+++.+        +.    ........
T Consensus        97 l~~~~~--~~~~ipillvgNK~DL~~~~~R~~~~--R----~--------V~~~~~~~--------la----~~~~~~~~  148 (331)
T 3r7w_B           97 IEYAYK--VNPSINIEVLIHKVDGLSEDFKVDAQ--R----D--------IMQRTGEE--------LL----ELGLDGVQ  148 (331)
T ss_dssp             HHHHHH--HCTTCEEEEECCCCCSSCSHHHHHHH--H----H--------HHHHHHHT--------TS----SSSCSCCC
T ss_pred             HHHHhh--cCCCCcEEEEEECcccCchhhhhhHH--H----H--------hhHHHHHH--------HH----hhcccccC
Confidence            333322  13479999999999996431000000  0    0        00111111        11    00000135


Q ss_pred             EEEEEeeccChhhHHHHHHHHHHHHHH
Q 018283          323 FKIYRTTALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       323 ~~~~~tSA~d~~ni~~vf~~i~~~i~~  349 (358)
                      +.+|+|||+| .||.++|..|+..|+.
T Consensus       149 i~f~eTSAkd-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          149 VSFYLTSIFD-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             EEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred             ceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence            8899999998 5999999999987653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.86  E-value=8.4e-21  Score=162.09  Aligned_cols=122  Identities=17%  Similarity=0.114  Sum_probs=85.1

Q ss_pred             cccceEEEEEecCCCch--hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEE
Q 018283          183 KKSGEVYRLFDVGGQRN--ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLF  260 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~--~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv  260 (358)
                      +...+.+.+||++|++.  ++..+..|+++++++|+|+|++          +..++.....|+..+.......++|+++|
T Consensus        48 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~~~~~~piilv  117 (175)
T 2nzj_A           48 DGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIA----------DRGSFESASELRIQLRRTHQADHVPIILV  117 (175)
T ss_dssp             TTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETT----------CHHHHHHHHHHHHHHHHCC----CCEEEE
T ss_pred             CCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhhccCCCCEEEE
Confidence            55668899999999998  6777888999999999999984          45667676777777765444457899999


Q ss_pred             eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283          261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF  340 (358)
Q Consensus       261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf  340 (358)
                      +||+|+..++.                     ...+++..+.. .               ..+.++++||++++||+++|
T Consensus       118 ~NK~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A          118 GNKADLARCRE---------------------VSVEEGRACAV-V---------------FDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EECTTCTTTCC---------------------SCHHHHHHHHH-H---------------HTSEEEECBTTTTBSHHHHH
T ss_pred             EEChhhccccc---------------------cCHHHHHHHHH-H---------------cCCeEEEEecCCCCCHHHHH
Confidence            99999965421                     12233333311 1               12567899999999999999


Q ss_pred             HHHHHHHHHhh
Q 018283          341 KLVDETLRRRH  351 (358)
Q Consensus       341 ~~i~~~i~~~~  351 (358)
                      +++.+.+....
T Consensus       161 ~~l~~~~~~~~  171 (175)
T 2nzj_A          161 EGVVRQLRLRR  171 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999987643

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.86  E-value=5.7e-21  Score=161.47  Aligned_cols=120  Identities=18%  Similarity=0.189  Sum_probs=88.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+.......+.|+++++|
T Consensus        48 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  117 (168)
T 1u8z_A           48 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSIT----------EMESFAATADFREQILRVKEDENVPFLLVGN  117 (168)
T ss_dssp             TTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHHCCTTSCEEEEEE
T ss_pred             CCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence            556688999999999999999999999999999999984          4456666666666665543345789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..+...                ..+.++++||+++.||+++|++
T Consensus       118 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A          118 KSDLEDKRQ---------------------VSVEEAKNRADQ----------------WNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHHH----------------HTCEEEECCTTTCTTHHHHHHH
T ss_pred             CccccccCc---------------------cCHHHHHHHHHH----------------cCCeEEEeCCCCCCCHHHHHHH
Confidence            999965421                     223444444221                1256788999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.+.+
T Consensus       161 l~~~i~~  167 (168)
T 1u8z_A          161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9988763

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.86  E-value=4.5e-21  Score=165.48  Aligned_cols=120  Identities=17%  Similarity=0.239  Sum_probs=90.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+.......++|++||+|
T Consensus        62 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n  131 (183)
T 3kkq_A           62 DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVT----------DKASFEHVDRFHQLILRVKDRESFPMILVAN  131 (183)
T ss_dssp             TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred             CCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence            556778899999999999999999999999999999984          4455555566666665433345789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeecc-ChhhHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL-DPKLVKKTFK  341 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~-d~~ni~~vf~  341 (358)
                      |+|+.+++.                     ...+++.++.. .+               .+.++++||+ +++||+++|+
T Consensus       132 K~Dl~~~~~---------------------v~~~~~~~~~~-~~---------------~~~~~~~Sa~~~~~~v~~l~~  174 (183)
T 3kkq_A          132 KVDLMHLRK---------------------VTRDQGKEMAT-KY---------------NIPYIETSAKDPPLNVDKTFH  174 (183)
T ss_dssp             CTTCSTTCC---------------------SCHHHHHHHHH-HH---------------TCCEEEEBCSSSCBSHHHHHH
T ss_pred             CCCchhccC---------------------cCHHHHHHHHH-Hh---------------CCeEEEeccCCCCCCHHHHHH
Confidence            999965321                     22334433322 11               1457889999 9999999999


Q ss_pred             HHHHHHHH
Q 018283          342 LVDETLRR  349 (358)
Q Consensus       342 ~i~~~i~~  349 (358)
                      ++.+.+.+
T Consensus       175 ~l~~~i~~  182 (183)
T 3kkq_A          175 DLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99998864

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=1.3e-21  Score=173.08  Aligned_cols=121  Identities=19%  Similarity=0.177  Sum_probs=89.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.....|+..+... ...++|++||+|
T Consensus        71 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~----------~~~s~~~~~~~~~~i~~~-~~~~~piilv~N  139 (201)
T 2ew1_A           71 NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDIT----------CEESFRCLPEWLREIEQY-ASNKVITVLVGN  139 (201)
T ss_dssp             TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred             CCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence            456689999999999999999999999999999999985          344554445555554332 124689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+++.                     ...+++..+...                ..+.++++||++++||+++|++
T Consensus       140 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gv~~l~~~  182 (201)
T 2ew1_A          140 KIDLAERRE---------------------VSQQRAEEFSEA----------------QDMYYLETSAKESDNVEKLFLD  182 (201)
T ss_dssp             CGGGGGGCS---------------------SCHHHHHHHHHH----------------HTCCEEECCTTTCTTHHHHHHH
T ss_pred             CCCCccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence            999965421                     122334333211                1245788999999999999999


Q ss_pred             HHHHHHHhh
Q 018283          343 VDETLRRRH  351 (358)
Q Consensus       343 i~~~i~~~~  351 (358)
                      +.+.+.+..
T Consensus       183 l~~~i~~~~  191 (201)
T 2ew1_A          183 LACRLISEA  191 (201)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987643

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.86  E-value=1.8e-21  Score=168.35  Aligned_cols=120  Identities=14%  Similarity=0.163  Sum_probs=89.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+.... ..+.|++||+|
T Consensus        55 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piilv~n  123 (186)
T 2bme_A           55 GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT----------SRETYNALTNWLTDARMLA-SQNIVIILCGN  123 (186)
T ss_dssp             TTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred             CCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence            455689999999999999999999999999999999984          3445555555665554322 24789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ....++.++...                ..+.++++||++++||+++|++
T Consensus       124 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~  166 (186)
T 2bme_A          124 KKDLDADRE---------------------VTFLEASRFAQE----------------NELMFLETSALTGENVEEAFVQ  166 (186)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred             Ccccccccc---------------------cCHHHHHHHHHH----------------cCCEEEEecCCCCCCHHHHHHH
Confidence            999965321                     223444433211                2367889999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+.+.
T Consensus       167 l~~~~~~~  174 (186)
T 2bme_A          167 CARKILNK  174 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.86  E-value=1.4e-20  Score=163.13  Aligned_cols=121  Identities=14%  Similarity=0.225  Sum_probs=91.7

Q ss_pred             ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283          186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD  265 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D  265 (358)
                      .+.+.+||++|++.++..|..|+++++++|||+|++          +..++.+...|+..+.......++|+++|+||+|
T Consensus        69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  138 (195)
T 3bc1_A           69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLT----------NEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSD  138 (195)
T ss_dssp             EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTT
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence            679999999999999999999999999999999984          4455666666776665544345789999999999


Q ss_pred             chhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283          266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~  345 (358)
                      +..++.                     ...+++.++.. .+               .+.++++||+++.||+++|+++.+
T Consensus       139 l~~~~~---------------------~~~~~~~~~~~-~~---------------~~~~~~~Sa~~~~~v~~l~~~l~~  181 (195)
T 3bc1_A          139 LEDQRA---------------------VKEEEARELAE-KY---------------GIPYFETSAANGTNISHAIEMLLD  181 (195)
T ss_dssp             CGGGCC---------------------SCHHHHHHHHH-HH---------------TCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccccc---------------------cCHHHHHHHHH-Hc---------------CCCEEEEECCCCCCHHHHHHHHHH
Confidence            965421                     12233333321 11               145788999999999999999999


Q ss_pred             HHHHhhhh
Q 018283          346 TLRRRHLF  353 (358)
Q Consensus       346 ~i~~~~~~  353 (358)
                      .+.+...+
T Consensus       182 ~~~~~~~~  189 (195)
T 3bc1_A          182 LIMKRMER  189 (195)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhh
Confidence            99865433

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.86  E-value=3.3e-21  Score=169.31  Aligned_cols=123  Identities=19%  Similarity=0.209  Sum_probs=94.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+.......++|++||+|
T Consensus        58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  127 (206)
T 2bov_A           58 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSIT----------EMESFAATADFREQILRVKEDENVPFLLVGN  127 (206)
T ss_dssp             TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHTTCSCCCEEEEEE
T ss_pred             CCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence            455678999999999999999999999999999999984          4456666667777766544345789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++.++...                ..+.++++||+++.||+++|++
T Consensus       128 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gi~~l~~~  170 (206)
T 2bov_A          128 KSDLEDKRQ---------------------VSVEEAKNRAEQ----------------WNVNYVETSAKTRANVDKVFFD  170 (206)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHHH----------------HTCEEEEECTTTCTTHHHHHHH
T ss_pred             ccCcccccc---------------------ccHHHHHHHHHH----------------hCCeEEEEeCCCCCCHHHHHHH
Confidence            999965421                     223444444321                1256789999999999999999


Q ss_pred             HHHHHHHhhh
Q 018283          343 VDETLRRRHL  352 (358)
Q Consensus       343 i~~~i~~~~~  352 (358)
                      +.+.+.....
T Consensus       171 l~~~i~~~~~  180 (206)
T 2bov_A          171 LMREIRARKM  180 (206)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHccc
Confidence            9999976543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=5.1e-21  Score=166.92  Aligned_cols=120  Identities=15%  Similarity=0.268  Sum_probs=90.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+... ...++|++||+|
T Consensus        68 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~piilv~n  136 (191)
T 3dz8_A           68 HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT----------NEESFNAVQDWATQIKTY-SWDNAQVILVGN  136 (191)
T ss_dssp             TTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETT----------CHHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred             CCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence            567789999999999999999999999999999999984          345555555555555432 235789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+++.                     ...+++..+.. .               ..+.++++||+++.||+++|++
T Consensus       137 K~Dl~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~gi~~l~~~  179 (191)
T 3dz8_A          137 KCDMEEERV---------------------VPTEKGQLLAE-Q---------------LGFDFFEASAKENISVRQAFER  179 (191)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHH-H---------------HTCEEEECBTTTTBSHHHHHHH
T ss_pred             CCCCccccc---------------------cCHHHHHHHHH-H---------------cCCeEEEEECCCCCCHHHHHHH
Confidence            999966532                     12233333211 1               1256889999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+.+.
T Consensus       180 l~~~i~~~  187 (191)
T 3dz8_A          180 LVDAICDK  187 (191)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.86  E-value=4.4e-21  Score=164.30  Aligned_cols=123  Identities=17%  Similarity=0.252  Sum_probs=87.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|+++       ..+...+..++..+..........+.|+++|+|
T Consensus        52 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~n  124 (177)
T 1wms_A           52 DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDD-------SQSFQNLSNWKKEFIYYADVKEPESFPFVILGN  124 (177)
T ss_dssp             TTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTC-------HHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEE
T ss_pred             CCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcC-------HHHHHHHHHHHHHHHHHccccccCCCcEEEEEE
Confidence            4556899999999999999999999999999999999852       112223333444444443333345789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+....                      ...+++.++...               ...+.++++||++++||+++|++
T Consensus       125 K~Dl~~~~----------------------~~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~gi~~l~~~  167 (177)
T 1wms_A          125 KIDISERQ----------------------VSTEEAQAWCRD---------------NGDYPYFETSAKDATNVAAAFEE  167 (177)
T ss_dssp             CTTCSSCS----------------------SCHHHHHHHHHH---------------TTCCCEEECCTTTCTTHHHHHHH
T ss_pred             CCcccccc----------------------cCHHHHHHHHHh---------------cCCceEEEEeCCCCCCHHHHHHH
Confidence            99986211                      223444444221               12255789999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.+++
T Consensus       168 l~~~~~~  174 (177)
T 1wms_A          168 AVRRVLA  174 (177)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998875

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.86  E-value=6.9e-21  Score=161.21  Aligned_cols=120  Identities=13%  Similarity=0.158  Sum_probs=89.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....++..+.......+.|+++++|
T Consensus        47 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  116 (167)
T 1c1y_A           47 DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSIT----------AQSTFNDLQDLREQILRVKDTEDVPMILVGN  116 (167)
T ss_dssp             SSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHHCCSCCCEEEEEE
T ss_pred             CCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhhCcCCCcEEEEEE
Confidence            556788999999999999999999999999999999984          3455555555665555433345789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+++.                     ...+++..+.. .+              ..+.++++||+++.||+++|++
T Consensus       117 K~Dl~~~~~---------------------~~~~~~~~~~~-~~--------------~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A          117 KCDLEDERV---------------------VGKEQGQNLAR-QW--------------CNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHH-HT--------------TSCEEEECBTTTTBSHHHHHHH
T ss_pred             Ccccccccc---------------------CCHHHHHHHHH-Hc--------------cCCcEEEecCCCCCCHHHHHHH
Confidence            999975431                     12233333311 11              1356889999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +.+.+.
T Consensus       161 l~~~i~  166 (167)
T 1c1y_A          161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988763

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.86  E-value=8e-21  Score=165.24  Aligned_cols=120  Identities=14%  Similarity=0.105  Sum_probs=90.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+|||+|++.++     |+++++++|+|+|++          +..++.+...|+..+.......++|++|++|
T Consensus        63 ~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  127 (184)
T 3ihw_A           63 DGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLE----------DEISFQTVYNYFLRLCSFRNASEVPMVLVGT  127 (184)
T ss_dssp             TTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHTTSCGGGSCEEEEEE
T ss_pred             CCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            5667889999999999887     889999999999984          5667778788888887654446789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..+.-.                   ....+++.++... +              ..+.++++||++++||+++|++
T Consensus       128 K~Dl~~~~~~-------------------~v~~~~~~~~~~~-~--------------~~~~~~e~Sa~~~~gv~~lf~~  173 (184)
T 3ihw_A          128 QDAISAANPR-------------------VIDDSRARKLSTD-L--------------KRCTYYETCATYGLNVERVFQD  173 (184)
T ss_dssp             CTTCBTTBCC-------------------CSCHHHHHHHHHH-T--------------TTCEEEEEBTTTTBTHHHHHHH
T ss_pred             Cccccccccc-------------------ccCHHHHHHHHHH-c--------------CCCeEEEecCCCCCCHHHHHHH
Confidence            9998532110                   0233444443211 1              1256789999999999999999


Q ss_pred             HHHHHHHhh
Q 018283          343 VDETLRRRH  351 (358)
Q Consensus       343 i~~~i~~~~  351 (358)
                      +.+.+++..
T Consensus       174 l~~~i~~~~  182 (184)
T 3ihw_A          174 VAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            999988654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.86  E-value=5.1e-21  Score=163.88  Aligned_cols=119  Identities=14%  Similarity=0.171  Sum_probs=87.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|||+|++          +..++.....|+..+.... ..+.|+++|+|
T Consensus        60 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piilv~n  128 (179)
T 1z0f_A           60 SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT----------RRSTYNHLSSWLTDARNLT-NPNTVIILIGN  128 (179)
T ss_dssp             TTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred             CCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCc----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence            556789999999999999999999999999999999985          3344444455555543321 24789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++.++...                ..+.++++||++++||+++|++
T Consensus       129 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~  171 (179)
T 1z0f_A          129 KADLEAQRD---------------------VTYEEAKQFAEE----------------NGLLFLEASAKTGENVEDAFLE  171 (179)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred             Ccccccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence            999965421                     223444444221                1256889999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.+++
T Consensus       172 l~~~i~~  178 (179)
T 1z0f_A          172 AAKKIYQ  178 (179)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHhh
Confidence            9988754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.86  E-value=7.7e-21  Score=168.97  Aligned_cols=118  Identities=16%  Similarity=0.240  Sum_probs=90.7

Q ss_pred             ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283          186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD  265 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D  265 (358)
                      .+.+.+|||+|++.++..|..|+++++++|||+|++          +..++.....|+..+.......++|++||+||+|
T Consensus        83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~----------~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~D  152 (217)
T 2f7s_A           83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLT----------SQQSFLNVRNWMSQLQANAYCENPDIVLIGNKAD  152 (217)
T ss_dssp             EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETT----------CHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTT
T ss_pred             eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCc
Confidence            688999999999999999999999999999999984          4566666667776665543336799999999999


Q ss_pred             chhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283          266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~  345 (358)
                      +..++.                     ...+++.++.. .               ..+.++++||++++||+++|+++.+
T Consensus       153 l~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~~~Sa~~g~gi~~l~~~l~~  195 (217)
T 2f7s_A          153 LPDQRE---------------------VNERQARELAD-K---------------YGIPYFETSAATGQNVEKAVETLLD  195 (217)
T ss_dssp             CGGGCC---------------------SCHHHHHHHHH-H---------------TTCCEEEEBTTTTBTHHHHHHHHHH
T ss_pred             cccccc---------------------cCHHHHHHHHH-H---------------CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            965421                     12233333321 1               1245788999999999999999999


Q ss_pred             HHHHh
Q 018283          346 TLRRR  350 (358)
Q Consensus       346 ~i~~~  350 (358)
                      .+.+.
T Consensus       196 ~i~~~  200 (217)
T 2f7s_A          196 LIMKR  200 (217)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.86  E-value=2.6e-21  Score=184.03  Aligned_cols=134  Identities=21%  Similarity=0.323  Sum_probs=99.7

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.++....+      ....+.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.....++..
T Consensus       194 ~pT~~~~~~~~------~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~----------~~~s~~~~~~~~~~  257 (329)
T 3o47_A          194 IPTIGFNVETV------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRERVNEAREELMR  257 (329)
T ss_dssp             EEETTEEEEEE------EETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETT----------CSSSHHHHHHHHHH
T ss_pred             ccccceEEEEE------ecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC----------chHHHHHHHHHHHH
Confidence            46888877777      778899999999999999999999999999999999984          56778888888888


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      ++......++|++||+||+|+.++.                       ..++...    .+...    ..   ..+.+.+
T Consensus       258 ~~~~~~~~~~piilV~NK~Dl~~~~-----------------------~~~~i~~----~~~~~----~~---~~~~~~~  303 (329)
T 3o47_A          258 MLAEDELRDAVLLVFANKQDLPNAM-----------------------NAAEITD----KLGLH----SL---RHRNWYI  303 (329)
T ss_dssp             HHTCGGGTTCEEEEEEECTTSTTCC-----------------------CHHHHHH----HHTCT----TC---CSSCEEE
T ss_pred             HHhhhccCCCeEEEEEECccCCccc-----------------------CHHHHHH----Hhchh----hh---hcCCCEE
Confidence            8877666789999999999986431                       1122111    11110    01   2345788


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~  349 (358)
                      +++||++++||+++|++|.+.+.+
T Consensus       304 ~~vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          304 QATCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHh
Confidence            999999999999999999988754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.86  E-value=2.3e-21  Score=169.49  Aligned_cols=120  Identities=14%  Similarity=0.184  Sum_probs=87.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.+...|+..+.. ....+.|++||+|
T Consensus        71 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~----------~~~s~~~~~~~~~~i~~-~~~~~~piilV~N  139 (192)
T 2il1_A           71 RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDIT----------KKETFDDLPKWMKMIDK-YASEDAELLLVGN  139 (192)
T ss_dssp             TTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHH-HSCTTCEEEEEEE
T ss_pred             CCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHH-hcCCCCcEEEEEE
Confidence            455689999999999999999999999999999999985          33444444444444322 2234789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..+.. .              -..+.++++||++++||+++|++
T Consensus       140 K~Dl~~~~~---------------------v~~~~~~~~~~-~--------------~~~~~~~~~SA~~g~gi~~l~~~  183 (192)
T 2il1_A          140 KLDCETDRE---------------------ITRQQGEKFAQ-Q--------------ITGMRFCEASAKDNFNVDEIFLK  183 (192)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHH-T--------------STTCEEEECBTTTTBSHHHHHHH
T ss_pred             Ccccccccc---------------------cCHHHHHHHHH-h--------------cCCCeEEEEeCCCCCCHHHHHHH
Confidence            999965421                     12233333211 0              01356789999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.+++
T Consensus       184 l~~~i~~  190 (192)
T 2il1_A          184 LVDDILK  190 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.85  E-value=7.8e-21  Score=161.15  Aligned_cols=117  Identities=17%  Similarity=0.243  Sum_probs=88.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+.... .++.|++||+|
T Consensus        51 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~iilv~n  119 (170)
T 1r2q_A           51 DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIT----------NEESFARAKNWVKELQRQA-SPNIVIALSGN  119 (170)
T ss_dssp             TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred             CCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence            556789999999999999999999999999999999984          4456666666776665432 35789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++.++...                ..+.++++||++++||+++|++
T Consensus       120 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A          120 KADLANKRA---------------------VDFQEAQSYADD----------------NSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred             CccCccccc---------------------cCHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence            999965421                     223444443211                1256788999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      +.+.+
T Consensus       163 i~~~~  167 (170)
T 1r2q_A          163 IAKKL  167 (170)
T ss_dssp             HHHTS
T ss_pred             HHHHH
Confidence            88754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=7.3e-21  Score=163.41  Aligned_cols=122  Identities=17%  Similarity=0.230  Sum_probs=79.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+.... ..+.|++||+|
T Consensus        56 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~n  124 (180)
T 2g6b_A           56 DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVT----------NKASFDNIQAWLTEIHEYA-QHDVALMLLGN  124 (180)
T ss_dssp             TTEEEEEEEEECCCC--------CCGGGCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred             CCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCCcEEEEEE
Confidence            456688999999999999999999999999999999985          3344444455555554322 14789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++.++.. .               ..+.++++||++++||+++|++
T Consensus       125 K~Dl~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~gi~~l~~~  167 (180)
T 2g6b_A          125 KVDSAHERV---------------------VKREDGEKLAK-E---------------YGLPFMETSAKTGLNVDLAFTA  167 (180)
T ss_dssp             CCSTTSCCC---------------------SCHHHHHHHHH-H---------------HTCCEEECCTTTCTTHHHHHHH
T ss_pred             CcccCcccc---------------------cCHHHHHHHHH-H---------------cCCeEEEEeCCCCCCHHHHHHH
Confidence            999965321                     12233333321 1               1245788999999999999999


Q ss_pred             HHHHHHHhhh
Q 018283          343 VDETLRRRHL  352 (358)
Q Consensus       343 i~~~i~~~~~  352 (358)
                      +.+.+.+.+.
T Consensus       168 l~~~~~~~~~  177 (180)
T 2g6b_A          168 IAKELKRRSM  177 (180)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHHHhc
Confidence            9998875443

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.85  E-value=9.9e-21  Score=163.21  Aligned_cols=123  Identities=19%  Similarity=0.209  Sum_probs=93.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+.......++|+++|+|
T Consensus        62 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  131 (187)
T 2a9k_A           62 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSIT----------EMESFAATADFREQILRVKEDENVPFLLVGN  131 (187)
T ss_dssp             TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHHCCTTCCEEEEEE
T ss_pred             CCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            455678999999999999999999999999999999984          4456666666666665543334789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++.++...                ..+.++++||++++||+++|++
T Consensus       132 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~  174 (187)
T 2a9k_A          132 KSDLEDKRQ---------------------VSVEEAKNRAEQ----------------WNVNYVETSAKTRANVDKVFFD  174 (187)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred             CccccccCc---------------------cCHHHHHHHHHH----------------cCCeEEEeCCCCCCCHHHHHHH
Confidence            999965421                     223444443211                1256789999999999999999


Q ss_pred             HHHHHHHhhh
Q 018283          343 VDETLRRRHL  352 (358)
Q Consensus       343 i~~~i~~~~~  352 (358)
                      +.+.+.+...
T Consensus       175 l~~~i~~~~~  184 (187)
T 2a9k_A          175 LMREIRARKM  184 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhc
Confidence            9999976543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.85  E-value=1.4e-20  Score=163.76  Aligned_cols=120  Identities=14%  Similarity=0.281  Sum_probs=89.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+... ...+.|++||+|
T Consensus        67 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~piilv~n  135 (189)
T 2gf9_A           67 HDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIA----------NQESFAAVQDWATQIKTY-SWDNAQVILVGN  135 (189)
T ss_dssp             TTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred             CCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence            556789999999999999999999999999999999984          344555555566555432 234789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++.++.. .+               .+.++++||+++.||+++|++
T Consensus       136 K~Dl~~~~~---------------------~~~~~~~~~~~-~~---------------~~~~~~~Sa~~g~gi~~l~~~  178 (189)
T 2gf9_A          136 KCDLEDERV---------------------VPAEDGRRLAD-DL---------------GFEFFEASAKENINVKQVFER  178 (189)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHH-HH---------------TCEEEECBTTTTBSHHHHHHH
T ss_pred             CcccccccC---------------------CCHHHHHHHHH-Hc---------------CCeEEEEECCCCCCHHHHHHH
Confidence            999965421                     12233333321 11               256889999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+.++
T Consensus       179 l~~~i~~~  186 (189)
T 2gf9_A          179 LVDVICEK  186 (189)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.85  E-value=2.7e-21  Score=170.04  Aligned_cols=122  Identities=16%  Similarity=0.166  Sum_probs=83.5

Q ss_pred             ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC--CCCCcEEEEeeC
Q 018283          186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC--FEKTSFMLFLNK  263 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~--~~~~~iilv~NK  263 (358)
                      .+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+.....  ..++|++||+||
T Consensus        72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK  141 (208)
T 2yc2_C           72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVS----------SMESFESCKAWFELLKSARPDRERPLRAVLVANK  141 (208)
T ss_dssp             EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETT----------CHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred             EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECC----------CHHHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence            789999999999999999999999999999999984          44566666677777655322  257899999999


Q ss_pred             CCchh-hhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC-hhhHHHHHH
Q 018283          264 FDIFE-KKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD-PKLVKKTFK  341 (358)
Q Consensus       264 ~Dl~~-eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d-~~ni~~vf~  341 (358)
                      +|+.. ++.                     ...+++.++...                ..+.++++||++ +.||+++|+
T Consensus       142 ~Dl~~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~gi~~l~~  184 (208)
T 2yc2_C          142 TDLPPQRHQ---------------------VRLDMAQDWATT----------------NTLDFFDVSANPPGKDADAPFL  184 (208)
T ss_dssp             C-------C---------------------CCHHHHHHHHHH----------------TTCEEEECCC-------CHHHH
T ss_pred             cccchhhcc---------------------CCHHHHHHHHHH----------------cCCEEEEeccCCCCcCHHHHHH
Confidence            99965 221                     223444444221                125788999999 999999999


Q ss_pred             HHHHHHHHhhhhh
Q 018283          342 LVDETLRRRHLFE  354 (358)
Q Consensus       342 ~i~~~i~~~~~~~  354 (358)
                      ++.+.+.+...++
T Consensus       185 ~i~~~~~~~~~~~  197 (208)
T 2yc2_C          185 SIATTFYRNYEDK  197 (208)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999988665443

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=9.9e-21  Score=164.68  Aligned_cols=120  Identities=15%  Similarity=0.198  Sum_probs=92.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|||+|++          +..++.....|+..+.......++|++||+|
T Consensus        60 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~n  129 (195)
T 1x3s_A           60 DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVT----------RRDTFVKLDNWLNELETYCTRNDIVNMLVGN  129 (195)
T ss_dssp             TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETT----------CHHHHHTHHHHHHHHTTCCSCSCCEEEEEEE
T ss_pred             CCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Confidence            556789999999999999999999999999999999984          4455666667777776544345789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+....                      ...+++.++...                ..+.++++||++++||+++|++
T Consensus       130 K~Dl~~~~----------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~  171 (195)
T 1x3s_A          130 KIDKENRE----------------------VDRNEGLKFARK----------------HSMLFIEASAKTCDGVQCAFEE  171 (195)
T ss_dssp             CTTSSSCC----------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred             CCcCcccc----------------------cCHHHHHHHHHH----------------cCCEEEEecCCCCCCHHHHHHH
Confidence            99984321                      123344443221                1256789999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+.+.
T Consensus       172 l~~~~~~~  179 (195)
T 1x3s_A          172 LVEKIIQT  179 (195)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHHhh
Confidence            99998753

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.85  E-value=4.3e-21  Score=162.06  Aligned_cols=120  Identities=14%  Similarity=0.212  Sum_probs=90.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....++..+.......+.|+++|+|
T Consensus        47 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  116 (167)
T 1kao_A           47 DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLV----------NQQSFQDIKPMRDQIIRVKRYEKVPVILVGN  116 (167)
T ss_dssp             TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHTTTSCCCEEEEEE
T ss_pred             CCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            556678999999999999999999999999999999984          4456666667777766543345789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..+.. .+               .+.++++||++++||+++|++
T Consensus       117 K~Dl~~~~~---------------------~~~~~~~~~~~-~~---------------~~~~~~~Sa~~~~gi~~l~~~  159 (167)
T 1kao_A          117 KVDLESERE---------------------VSSSEGRALAE-EW---------------GCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHH-HH---------------TSCEEEECTTCHHHHHHHHHH
T ss_pred             CCccccccc---------------------CCHHHHHHHHH-Hh---------------CCCEEEecCCCCcCHHHHHHH
Confidence            999865321                     11233333321 11               145788999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.+.+
T Consensus       160 l~~~~~~  166 (167)
T 1kao_A          160 IVRQMNY  166 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9988753

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.85  E-value=1.1e-20  Score=168.48  Aligned_cols=131  Identities=15%  Similarity=0.137  Sum_probs=89.1

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.+. ..|+..+...  .+++|++||+
T Consensus        71 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~i~~~--~~~~piilv~  138 (214)
T 3q3j_B           71 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDIS----------RPETVDSALKKWRTEILDY--CPSTRVLLIG  138 (214)
T ss_dssp             --CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT----------CTHHHHHHHTHHHHHHHHH--CTTSEEEEEE
T ss_pred             CCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECc----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence            556789999999999999999999999999999999984          45666663 3444444332  2478999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE-EEEEeeccChhh-HHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKL-VKKT  339 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~d~~n-i~~v  339 (358)
                      ||+|+..+......+.      +.   .......+++..+...                ..+ .+++|||+++.| |+++
T Consensus       139 nK~Dl~~~~~~~~~~~------~~---~~~~v~~~~~~~~~~~----------------~~~~~~~e~SA~~g~g~v~~l  193 (214)
T 3q3j_B          139 CKTDLRTDLSTLMELS------HQ---KQAPISYEQGCAIAKQ----------------LGAEIYLEGSAFTSEKSIHSI  193 (214)
T ss_dssp             ECGGGGGCHHHHHHHH------HT---TCCCCCHHHHHHHHHH----------------HTCSEEEECCTTTCHHHHHHH
T ss_pred             EChhhccchhhhhhhc------cc---ccCccCHHHHHHHHHH----------------cCCCEEEEeccCCCcccHHHH
Confidence            9999976421000000      00   0000234444444221                124 678999999998 9999


Q ss_pred             HHHHHHHHHHh
Q 018283          340 FKLVDETLRRR  350 (358)
Q Consensus       340 f~~i~~~i~~~  350 (358)
                      |+.+.+.++..
T Consensus       194 f~~l~~~~~~~  204 (214)
T 3q3j_B          194 FRTASMLCLNK  204 (214)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHhcc
Confidence            99999988754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=3e-21  Score=168.66  Aligned_cols=119  Identities=13%  Similarity=0.179  Sum_probs=88.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+... ...+.|+++|+|
T Consensus        68 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~piiiv~N  136 (192)
T 2fg5_A           68 GNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDIT----------KQDSFYTLKKWVKELKEH-GPENIVMAIAGN  136 (192)
T ss_dssp             SSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETT----------CTHHHHHHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred             CCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHh-CCCCCcEEEEEE
Confidence            556789999999999999999999999999999999984          345555555666655432 234789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+++.                     ...+++.++..                ...+.++++||+++.||+++|++
T Consensus       137 K~Dl~~~~~---------------------v~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~l~~~  179 (192)
T 2fg5_A          137 KCDLSDIRE---------------------VPLKDAKEYAE----------------SIGAIVVETSAKNAINIEELFQG  179 (192)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHH----------------TTTCEEEECBTTTTBSHHHHHHH
T ss_pred             Ccccccccc---------------------cCHHHHHHHHH----------------HcCCEEEEEeCCCCcCHHHHHHH
Confidence            999965321                     22344444321                12256889999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.+.+
T Consensus       180 l~~~i~~  186 (192)
T 2fg5_A          180 ISRQIPP  186 (192)
T ss_dssp             HHHTCC-
T ss_pred             HHHHHHh
Confidence            9887653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.85  E-value=1.3e-20  Score=161.63  Aligned_cols=122  Identities=16%  Similarity=0.171  Sum_probs=92.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..++......+.|+++|+|
T Consensus        53 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilv~n  122 (181)
T 2fn4_A           53 DGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAIN----------DRQSFNEVGKLFTQILRVKDRDDFPVVLVGN  122 (181)
T ss_dssp             TTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred             CCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            445678999999999999999999999999999999984          4556666667777765433345789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..+..                ...+.++++||++++||+++|++
T Consensus       123 K~Dl~~~~~---------------------v~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gv~~l~~~  165 (181)
T 2fn4_A          123 KADLESQRQ---------------------VPRSEASAFGA----------------SHHVAYFEASAKLRLNVDEAFEQ  165 (181)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHH----------------HTTCEEEECBTTTTBSHHHHHHH
T ss_pred             Ccccccccc---------------------cCHHHHHHHHH----------------HcCCeEEEecCCCCCCHHHHHHH
Confidence            999965421                     11233333211                11356889999999999999999


Q ss_pred             HHHHHHHhh
Q 018283          343 VDETLRRRH  351 (358)
Q Consensus       343 i~~~i~~~~  351 (358)
                      +.+.+.+..
T Consensus       166 l~~~~~~~~  174 (181)
T 2fn4_A          166 LVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999987643

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.85  E-value=1.2e-20  Score=167.46  Aligned_cols=75  Identities=21%  Similarity=0.274  Sum_probs=57.9

Q ss_pred             ceEEEEEecCCCchhhh-hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC--CCCCCCcEEEEee
Q 018283          186 GEVYRLFDVGGQRNERR-KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ--PCFEKTSFMLFLN  262 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r~-~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~--~~~~~~~iilv~N  262 (358)
                      .+.+.+|||+|++.++. .|..|+++++++|||+|++++         ...+.+...++..++..  ....++|++||+|
T Consensus        53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n  123 (214)
T 2fh5_B           53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF---------QREVKDVAEFLYQVLIDSMALKNSPSLLIACN  123 (214)
T ss_dssp             CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEE
T ss_pred             ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCc---------CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEE
Confidence            68999999999999998 899999999999999998521         23355556666555432  1223689999999


Q ss_pred             CCCchhh
Q 018283          263 KFDIFEK  269 (358)
Q Consensus       263 K~Dl~~e  269 (358)
                      |+|+..+
T Consensus       124 K~Dl~~~  130 (214)
T 2fh5_B          124 KQDIAMA  130 (214)
T ss_dssp             CTTSTTC
T ss_pred             CCCCCCc
Confidence            9999653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.85  E-value=6.9e-21  Score=161.66  Aligned_cols=119  Identities=15%  Similarity=0.248  Sum_probs=87.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+.... ..+.|+++|+|
T Consensus        48 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~n  116 (170)
T 1g16_A           48 NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT----------DERTFTNIKQWFKTVNEHA-NDEAQLLLVGN  116 (170)
T ss_dssp             SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETT----------CHHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred             CCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence            455688999999999999999999999999999999985          3344545555555554321 24789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+....                      ...+++.++.. .+               .+.++++||++++||+++|++
T Consensus       117 K~Dl~~~~----------------------~~~~~~~~~~~-~~---------------~~~~~~~Sa~~~~gv~~l~~~  158 (170)
T 1g16_A          117 KSDMETRV----------------------VTADQGEALAK-EL---------------GIPFIESSAKNDDNVNEIFFT  158 (170)
T ss_dssp             CTTCTTCC----------------------SCHHHHHHHHH-HH---------------TCCEEECBTTTTBSHHHHHHH
T ss_pred             CccCCcCc----------------------cCHHHHHHHHH-Hc---------------CCeEEEEECCCCCCHHHHHHH
Confidence            99993211                      12233333321 11               245788999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+.+.
T Consensus       159 l~~~~~~~  166 (170)
T 1g16_A          159 LAKLIQEK  166 (170)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99988754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=1.2e-20  Score=168.46  Aligned_cols=121  Identities=17%  Similarity=0.116  Sum_probs=90.7

Q ss_pred             cccceEEEEEecCCCch-hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRN-ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~-~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+|||+|++. ++.++..||+.++++|+|||+          ++..++.....|+..+.......++|++||+
T Consensus        83 ~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydv----------t~~~sf~~~~~~~~~l~~~~~~~~~piilVg  152 (211)
T 2g3y_A           83 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSI----------TDRASFEKASELRIQLRRARQTEDIPIILVG  152 (211)
T ss_dssp             TTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEET----------TCHHHHHHHHHHHHHHHTSGGGTTSCEEEEE
T ss_pred             CCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence            56678899999999988 677788899999999999998          4567777777777766543333578999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+||.+++.                     ...+++..+. ..               ..+.+++|||++++||+++|+
T Consensus       153 NK~DL~~~r~---------------------v~~~e~~~~a-~~---------------~~~~~~e~SAk~g~~v~elf~  195 (211)
T 2g3y_A          153 NKSDLVRCRE---------------------VSVSEGRACA-VV---------------FDCKFIETSAAVQHNVKELFE  195 (211)
T ss_dssp             ECTTCGGGCC---------------------SCHHHHHHHH-HH---------------HTCEEEECBTTTTBSHHHHHH
T ss_pred             EChHHhcCce---------------------EeHHHHHHHH-HH---------------cCCEEEEEeCCCCCCHHHHHH
Confidence            9999965421                     1223333321 11               125678999999999999999


Q ss_pred             HHHHHHHHh
Q 018283          342 LVDETLRRR  350 (358)
Q Consensus       342 ~i~~~i~~~  350 (358)
                      ++.+.+...
T Consensus       196 ~l~~~i~~~  204 (211)
T 2g3y_A          196 GIVRQVRLR  204 (211)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988643

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.85  E-value=2.2e-20  Score=164.17  Aligned_cols=120  Identities=16%  Similarity=0.278  Sum_probs=90.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+... ...+.|++||+|
T Consensus        53 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~piilv~n  121 (203)
T 1zbd_A           53 NDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDIT----------NEESFNAVQDWSTQIKTY-SWDNAQVLLVGN  121 (203)
T ss_dssp             TTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETT----------CHHHHHHHHHHHHHHHHH-SCSSCEEEEEEE
T ss_pred             CCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence            556789999999999999999999999999999999984          345566666666665442 234789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..+.. .+               .+.++++||+++.||+++|++
T Consensus       122 K~Dl~~~~~---------------------~~~~~~~~~~~-~~---------------~~~~~~~Sa~~~~gi~~l~~~  164 (203)
T 1zbd_A          122 KCDMEDERV---------------------VSSERGRQLAD-HL---------------GFEFFEASAKDNINVKQTFER  164 (203)
T ss_dssp             CTTCTTSCC---------------------SCHHHHHHHHH-HH---------------TCEEEECBTTTTBSSHHHHHH
T ss_pred             CcccCcccc---------------------cCHHHHHHHHH-HC---------------CCeEEEEECCCCCCHHHHHHH
Confidence            999965321                     12233333321 11               256789999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+.+.
T Consensus       165 l~~~i~~~  172 (203)
T 1zbd_A          165 LVDVICEK  172 (203)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.85  E-value=7.2e-21  Score=161.74  Aligned_cols=118  Identities=15%  Similarity=0.150  Sum_probs=80.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+... ...+.|+++|+|
T Consensus        51 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~piilv~n  119 (170)
T 1z08_A           51 GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDIT----------DEDSFQKVKNWVKELRKM-LGNEICLCIVGN  119 (170)
T ss_dssp             SSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHH-HGGGSEEEEEEE
T ss_pred             CCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh-cCCCCeEEEEEE
Confidence            556789999999999999999999999999999999985          334555555555544321 123689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+++.                     ...+++.++...                ..+.++++||++++||+++|++
T Consensus       120 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A          120 KIDLEKERH---------------------VSIQEAESYAES----------------VGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEEEBTTTTBSHHHHHHH
T ss_pred             Ccccccccc---------------------cCHHHHHHHHHH----------------cCCeEEEecCCCCCCHHHHHHH
Confidence            999975421                     223444443211                1256788999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +.+.+.
T Consensus       163 l~~~~~  168 (170)
T 1z08_A          163 LCKRMI  168 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998875

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.85  E-value=1e-20  Score=164.83  Aligned_cols=119  Identities=13%  Similarity=0.163  Sum_probs=85.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC--CCCCCcEEEE
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CFEKTSFMLF  260 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~--~~~~~~iilv  260 (358)
                      +...+.+.+|||+|++.++.. ..|+++++++|+|+|++          +..++.....|+..+....  ...++|++||
T Consensus        65 ~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv  133 (187)
T 3c5c_A           65 DHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVD----------SRQSFDSSSSYLELLALHAKETQRSIPALLL  133 (187)
T ss_dssp             TTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_pred             CCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhhccCCCCCEEEE
Confidence            566789999999999999874 78999999999999984          4556666666666654321  1247899999


Q ss_pred             eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeec-cChhhHHHH
Q 018283          261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTA-LDPKLVKKT  339 (358)
Q Consensus       261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA-~d~~ni~~v  339 (358)
                      +||+|+..++.                     ...+++.++...                ..+.++++|| ++++||+++
T Consensus       134 ~nK~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~e~Sa~~~g~gv~~l  176 (187)
T 3c5c_A          134 GNKLDMAQYRQ---------------------VTKAEGVALAGR----------------FGCLFFEVSACLDFEHVQHV  176 (187)
T ss_dssp             EECGGGGGGCS---------------------SCHHHHHHHHHH----------------HTCEEEECCSSSCSHHHHHH
T ss_pred             EECcchhhcCc---------------------cCHHHHHHHHHH----------------cCCcEEEEeecCccccHHHH
Confidence            99999965421                     223444444221                1256789999 899999999


Q ss_pred             HHHHHHHHHH
Q 018283          340 FKLVDETLRR  349 (358)
Q Consensus       340 f~~i~~~i~~  349 (358)
                      |+.+.+.+.+
T Consensus       177 f~~l~~~i~~  186 (187)
T 3c5c_A          177 FHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999988753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.85  E-value=1.1e-20  Score=162.53  Aligned_cols=119  Identities=18%  Similarity=0.228  Sum_probs=89.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+.... .++.|+++|+|
T Consensus        57 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~n  125 (181)
T 2efe_B           57 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVT----------NQASFERAKKWVQELQAQG-NPNMVMALAGN  125 (181)
T ss_dssp             TTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred             CCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence            456789999999999999999999999999999999984          4455666666776665432 24789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++.++...                ..+.++++||++++||+++|++
T Consensus       126 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gi~~l~~~  168 (181)
T 2efe_B          126 KSDLLDARK---------------------VTAEDAQTYAQE----------------NGLFFMETSAKTATNVKEIFYE  168 (181)
T ss_dssp             CTTCTTTCC---------------------SCHHHHHHHHHH----------------TTCEEEECCSSSCTTHHHHHHH
T ss_pred             CCccccccc---------------------CCHHHHHHHHHH----------------cCCEEEEEECCCCCCHHHHHHH
Confidence            999964321                     223444443211                1256889999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.+..
T Consensus       169 l~~~~~~  175 (181)
T 2efe_B          169 IARRLPR  175 (181)
T ss_dssp             HHHTCC-
T ss_pred             HHHHHHh
Confidence            9887754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.85  E-value=1.1e-20  Score=166.51  Aligned_cols=120  Identities=19%  Similarity=0.264  Sum_probs=90.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+|||+|++.++..|..|+++++++|||+|++          +..++.....|+..+.... ..+.|++||+|
T Consensus        53 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~n  121 (206)
T 2bcg_Y           53 DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVT----------DQESFNGVKMWLQEIDRYA-TSTVLKLLVGN  121 (206)
T ss_dssp             TTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred             CCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhc-CCCCCEEEEEE
Confidence            556689999999999999999999999999999999984          3455666566666654322 34789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..+...                ..+.++++||++++||+++|++
T Consensus       122 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gi~~l~~~  164 (206)
T 2bcg_Y          122 KCDLKDKRV---------------------VEYDVAKEFADA----------------NKMPFLETSALDSTNVEDAFLT  164 (206)
T ss_dssp             CTTCTTTCC---------------------SCHHHHHHHHHH----------------TTCCEEECCTTTCTTHHHHHHH
T ss_pred             CCCCccccc---------------------cCHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence            999965421                     123334333211                1245788999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+.+.
T Consensus       165 l~~~i~~~  172 (206)
T 2bcg_Y          165 MARQIKES  172 (206)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.85  E-value=1.6e-20  Score=163.64  Aligned_cols=121  Identities=19%  Similarity=0.274  Sum_probs=89.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+... ...+.|++||+|
T Consensus        61 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~n  129 (196)
T 3tkl_A           61 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT----------DQESFNNVKQWLQEIDRY-ASENVNKLLVGN  129 (196)
T ss_dssp             TTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred             CCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence            455689999999999999999999999999999999985          344555555555555432 224789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ....++..+.. .               ..+.++++||+++.||+++|++
T Consensus       130 K~Dl~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~g~gv~~l~~~  172 (196)
T 3tkl_A          130 KCDLTTKKV---------------------VDYTTAKEFAD-S---------------LGIPFLETSAKNATNVEQSFMT  172 (196)
T ss_dssp             CTTCTTTCC---------------------SCHHHHHHHHH-H---------------TTCCEEEECTTTCTTHHHHHHH
T ss_pred             Ccccccccc---------------------cCHHHHHHHHH-H---------------cCCcEEEEeCCCCCCHHHHHHH
Confidence            999965431                     22233333211 1               1245788999999999999999


Q ss_pred             HHHHHHHhh
Q 018283          343 VDETLRRRH  351 (358)
Q Consensus       343 i~~~i~~~~  351 (358)
                      +.+.+.+..
T Consensus       173 l~~~i~~~~  181 (196)
T 3tkl_A          173 MAAEIKKRM  181 (196)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            999987653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.85  E-value=1.1e-20  Score=165.98  Aligned_cols=124  Identities=16%  Similarity=0.152  Sum_probs=86.1

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+... ...+.|++||+|
T Consensus        73 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~piilv~N  141 (199)
T 2p5s_A           73 DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVT----------CEKSFLNIREWVDMIEDA-AHETVPIMLVGN  141 (199)
T ss_dssp             TTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHHH-C---CCEEEEEE
T ss_pred             CCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECC----------ChHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence            556788999999999999999999999999999999984          334444444555444321 224689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..+......               .....+++..+...                ..+.++++||++++||.++|++
T Consensus       142 K~Dl~~~~~~~~~---------------~~v~~~~~~~~~~~----------------~~~~~~~~SA~~g~gv~el~~~  190 (199)
T 2p5s_A          142 KADIRDTAATEGQ---------------KCVPGHFGEKLAMT----------------YGALFCETSAKDGSNIVEAVLH  190 (199)
T ss_dssp             CGGGHHHHHHTTC---------------CCCCHHHHHHHHHH----------------HTCEEEECCTTTCTTHHHHHHH
T ss_pred             Ccccccccccccc---------------cccCHHHHHHHHHH----------------cCCeEEEeeCCCCCCHHHHHHH
Confidence            9999754211000               00223334333221                1256788999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +.+.+.
T Consensus       191 l~~~i~  196 (199)
T 2p5s_A          191 LAREVK  196 (199)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            998875

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.85  E-value=9.7e-21  Score=165.40  Aligned_cols=121  Identities=12%  Similarity=0.145  Sum_probs=88.1

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH-HHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.+... |+..+..  ...++|++||+
T Consensus        67 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~~p~ilv~  134 (194)
T 3reg_A           67 KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVN----------NRTSFDNISTKWEPEIKH--YIDTAKTVLVG  134 (194)
T ss_dssp             TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHH--HCTTSEEEEEE
T ss_pred             CCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHH--hCCCCCEEEEE
Confidence            556788999999999999999999999999999999984          4556666433 3333322  23578999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEE-EEEeeccChhhHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFK-IYRTTALDPKLVKKTF  340 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~-~~~tSA~d~~ni~~vf  340 (358)
                      ||+|+..+....                   ...+++.++... +               .+. ++++||++++||+++|
T Consensus       135 nK~Dl~~~~~~~-------------------~~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~gi~~l~  179 (194)
T 3reg_A          135 LKVDLRKDGSDD-------------------VTKQEGDDLCQK-L---------------GCVAYIEASSVAKIGLNEVF  179 (194)
T ss_dssp             ECGGGCCTTTTC-------------------CCHHHHHHHHHH-H---------------TCSCEEECBTTTTBSHHHHH
T ss_pred             EChhhccCCCCc-------------------ccHHHHHHHHHh-c---------------CCCEEEEeecCCCCCHHHHH
Confidence            999997532100                   223444443221 1               122 7889999999999999


Q ss_pred             HHHHHHHHHh
Q 018283          341 KLVDETLRRR  350 (358)
Q Consensus       341 ~~i~~~i~~~  350 (358)
                      +++.+.+++.
T Consensus       180 ~~l~~~i~~~  189 (194)
T 3reg_A          180 EKSVDCIFSN  189 (194)
T ss_dssp             HHHHHHHHCS
T ss_pred             HHHHHHHHhc
Confidence            9999998754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.85  E-value=4e-21  Score=162.94  Aligned_cols=120  Identities=13%  Similarity=0.190  Sum_probs=88.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.+...|+..+.... ..+.|+++++|
T Consensus        48 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piilv~n  116 (170)
T 1ek0_A           48 NEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVT----------KPQSFIKARHWVKELHEQA-SKDIIIALVGN  116 (170)
T ss_dssp             TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred             CCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecC----------ChHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence            556789999999999999999999999999999999984          4456666666676665432 35789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..+.-.                  .....+++.++.. .               ..+.++++||+++.||+++|++
T Consensus       117 K~Dl~~~~~~------------------~~v~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1ek0_A          117 KIDXLQEGGE------------------RKVAREEGEKLAE-E---------------KGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             CGGGGGSSCC------------------CCSCHHHHHHHHH-H---------------HTCEEEECCTTTCTTHHHHHHH
T ss_pred             CCCccccccc------------------cCCCHHHHHHHHH-H---------------cCCEEEEEeCCCCCCHHHHHHH
Confidence            9999754210                  0012233333311 1               1256889999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      +.+.+
T Consensus       163 l~~~i  167 (170)
T 1ek0_A          163 IGEKI  167 (170)
T ss_dssp             HHTTS
T ss_pred             HHHHH
Confidence            88755

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.85  E-value=2.6e-20  Score=163.43  Aligned_cols=134  Identities=13%  Similarity=0.106  Sum_probs=91.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.+.. .|+..+...  ..++|++||+
T Consensus        64 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~  131 (201)
T 2q3h_A           64 DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVV----------SPSSFQNVSEKWVPEIRCH--CPKAPIILVG  131 (201)
T ss_dssp             TTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CSSSCEEEEE
T ss_pred             CCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence            455688999999999999999999999999999999984          445666655 455555432  2378999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+..+......+      .+.   .......+++..+.. .+              ..+.++++||++++||+++|+
T Consensus       132 nK~Dl~~~~~~~~~~------~~~---~~~~v~~~~~~~~~~-~~--------------~~~~~~~~Sa~~g~gi~~l~~  187 (201)
T 2q3h_A          132 TQSDLREDVKVLIEL------DKC---KEKPVPEEAAKLLAE-EI--------------KAASYIECSALTQKNLKEVFD  187 (201)
T ss_dssp             ECGGGGGCHHHHHHH------HTT---TCCCCCHHHHHHHHH-HH--------------TCSEEEECCTTTCTTHHHHHH
T ss_pred             ECHhhhhchhhhhhh------ccc---ccccCCHHHHHHHHH-hc--------------CCcEEEEEecCCCCCHHHHHH
Confidence            999997542110000      000   000123344444321 11              113678999999999999999


Q ss_pred             HHHHHHHHhhh
Q 018283          342 LVDETLRRRHL  352 (358)
Q Consensus       342 ~i~~~i~~~~~  352 (358)
                      ++.+.+++..-
T Consensus       188 ~l~~~~~~~~~  198 (201)
T 2q3h_A          188 AAIVAGIQYSD  198 (201)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHhcccc
Confidence            99999886543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.85  E-value=9.5e-21  Score=160.49  Aligned_cols=118  Identities=18%  Similarity=0.250  Sum_probs=87.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+....  .+.|+++|+|
T Consensus        50 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~--~~~piilv~n  117 (168)
T 1z2a_A           50 NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTT----------DRESFEAISSWREKVVAEV--GDIPTALVQN  117 (168)
T ss_dssp             TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETT----------CHHHHHTHHHHHHHHHHHH--CSCCEEEEEE
T ss_pred             CCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhC--CCCCEEEEEE
Confidence            455689999999999999999999999999999999985          3344555555555554422  4689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+++.                     ...+++.++.. .               ..+.++.+||+++.||+++|++
T Consensus       118 K~Dl~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~~i~~l~~~  160 (168)
T 1z2a_A          118 KIDLLDDSC---------------------IKNEEAEGLAK-R---------------LKLRFYRTSVKEDLNVSEVFKY  160 (168)
T ss_dssp             CGGGGGGCS---------------------SCHHHHHHHHH-H---------------HTCEEEECBTTTTBSSHHHHHH
T ss_pred             CcccCcccc---------------------cCHHHHHHHHH-H---------------cCCeEEEEecCCCCCHHHHHHH
Confidence            999975421                     12233333321 1               1256789999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.+++
T Consensus       161 l~~~~~~  167 (168)
T 1z2a_A          161 LAEKHLQ  167 (168)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988763

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.85  E-value=4.9e-21  Score=171.44  Aligned_cols=120  Identities=17%  Similarity=0.215  Sum_probs=87.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.....|+..+... ...++|++||+|
T Consensus        58 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~----------~~~s~~~~~~~l~~i~~~-~~~~~piilv~n  126 (223)
T 3cpj_B           58 EGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDIS----------KSSSYENCNHWLSELREN-ADDNVAVGLIGN  126 (223)
T ss_dssp             TTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-C----------CHHHHHHHHHHHHHHHHH-CC--CEEEEEEC
T ss_pred             CCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHh-CCCCCeEEEEEE
Confidence            455689999999999999999999999999999999984          445666666666666443 234789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..|...                ..+.++++||++++||+++|++
T Consensus       127 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~  169 (223)
T 3cpj_B          127 KSDLAHLRA---------------------VPTEESKTFAQE----------------NQLLFTETSALNSENVDKAFEE  169 (223)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCCC-CCCHHHHHHH
T ss_pred             Ccccccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence            999975421                     123344443211                1256788999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+.+.
T Consensus       170 l~~~i~~~  177 (223)
T 3cpj_B          170 LINTIYQK  177 (223)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHHH
Confidence            99988643

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.85  E-value=4.6e-20  Score=158.40  Aligned_cols=121  Identities=12%  Similarity=0.049  Sum_probs=84.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHH---HHHHHHcCCCCCCCcEEE
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE---LFDWVLKQPCFEKTSFML  259 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~---~~~~i~~~~~~~~~~iil  259 (358)
                      +...+.+.+||++|++.     ..|+++++++|+|+|++          +..++.....   ++..+.. ....++|++|
T Consensus        50 ~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~----------~~~s~~~~~~~~~~i~~~~~-~~~~~~piil  113 (178)
T 2iwr_A           50 DGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLE----------DENSFQAVSRLHGQLSSLRG-EGRGGLALAL  113 (178)
T ss_dssp             TTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHHC-SSSCCCEEEE
T ss_pred             CCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECc----------CHHHHHHHHHHHHHHHHHHh-cCCCCCCEEE
Confidence            55678899999999986     46899999999999985          3444544444   4555433 2235789999


Q ss_pred             EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283          260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT  339 (358)
Q Consensus       260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v  339 (358)
                      |+||+|+..+.-                   .....+++.++... +              ..+.+++|||++++||+++
T Consensus       114 v~nK~Dl~~~~~-------------------~~v~~~~~~~~~~~-~--------------~~~~~~~~Sa~~~~~i~~l  159 (178)
T 2iwr_A          114 VGTQDRISASSP-------------------RVVGDARARALXAD-M--------------KRCSYYETXATYGLNVDRV  159 (178)
T ss_dssp             EEECTTCBTTBC-------------------CCSCHHHHHHHHHH-H--------------SSEEEEEEBTTTTBTHHHH
T ss_pred             EEECcccccccc-------------------CcCCHHHHHHHHHh-h--------------cCCeEEEEeccccCCHHHH
Confidence            999999853210                   00233444443211 0              1367889999999999999


Q ss_pred             HHHHHHHHHHhhhh
Q 018283          340 FKLVDETLRRRHLF  353 (358)
Q Consensus       340 f~~i~~~i~~~~~~  353 (358)
                      |+++.+.+++....
T Consensus       160 f~~l~~~~~~~~~~  173 (178)
T 2iwr_A          160 FQEVAQKVVTLRKQ  173 (178)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999865443

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.84  E-value=1.6e-20  Score=164.61  Aligned_cols=127  Identities=15%  Similarity=0.198  Sum_probs=85.5

Q ss_pred             ccceEEEEEecCCCchhhhh-H--hhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEE
Q 018283          184 KSGEVYRLFDVGGQRNERRK-W--IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLF  260 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~-w--~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv  260 (358)
                      ...+.+++||++|++.++.. |  ..||++++++|||+|+++        ...+.+.....|+..+...  ..++|++||
T Consensus        66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--------~~~~~~~~~~~~l~~~~~~--~~~~piilv  135 (196)
T 3llu_A           66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD--------DYMEALTRLHITVSKAYKV--NPDMNFEVF  135 (196)
T ss_dssp             TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTS--------CCHHHHHHHHHHHHHHHHH--CTTCEEEEE
T ss_pred             CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCC--------chHHHHHHHHHHHHHHHhc--CCCCcEEEE
Confidence            56789999999999998666 4  899999999999999852        1235556666666665322  247899999


Q ss_pred             eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283          261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF  340 (358)
Q Consensus       261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf  340 (358)
                      +||+|+..+....                   ....+........+....    .   ....+.+++|||++ +||+++|
T Consensus       136 ~nK~Dl~~~~~~~-------------------~~~~~v~~~~~~~~~~~~----~---~~~~~~~~e~Sa~~-~~v~~~f  188 (196)
T 3llu_A          136 IHKVDGLSDDHKI-------------------ETQRDIHQRANDDLADAG----L---EKLHLSFYLTSIYD-HSIFEAF  188 (196)
T ss_dssp             EECGGGSCHHHHH-------------------HHHHHHHHHHHHHHHHTT----C---TTSCEEEEEECTTS-THHHHHH
T ss_pred             EeccccCchhhhh-------------------HHHhHHHHHHHHHHHHhh----h---hcCCcceEEEEech-hhHHHHH
Confidence            9999986532100                   000111111122222110    0   12457889999999 9999999


Q ss_pred             HHHHHHH
Q 018283          341 KLVDETL  347 (358)
Q Consensus       341 ~~i~~~i  347 (358)
                      +.+.+.|
T Consensus       189 ~~l~~~l  195 (196)
T 3llu_A          189 SKVVQKL  195 (196)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998865

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=2.5e-20  Score=163.14  Aligned_cols=121  Identities=14%  Similarity=0.154  Sum_probs=90.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++. +..|..|+++++++|+|+|++          +.+++.+...|+..+.......++|++||+|
T Consensus        72 ~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~N  140 (196)
T 2atv_A           72 DDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDIT----------DRGSFEEVLPLKNILDEIKKPKNVTLILVGN  140 (196)
T ss_dssp             TTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             CCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhhCCCCCcEEEEEE
Confidence            55678899999999998 899999999999999999984          3445555555565554432335789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh-hHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK-LVKKTFK  341 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~-ni~~vf~  341 (358)
                      |+|+..++.                     ...+++..+...                ..+.++++||++++ ||.++|+
T Consensus       141 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~g~~gi~~l~~  183 (196)
T 2atv_A          141 KADLDHSRQ---------------------VSTEEGEKLATE----------------LACAFYECSACTGEGNITEIFY  183 (196)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHHH----------------HTSEEEECCTTTCTTCHHHHHH
T ss_pred             Ccccccccc---------------------cCHHHHHHHHHH----------------hCCeEEEECCCcCCcCHHHHHH
Confidence            999976421                     223444443221                12568899999999 9999999


Q ss_pred             HHHHHHHHhh
Q 018283          342 LVDETLRRRH  351 (358)
Q Consensus       342 ~i~~~i~~~~  351 (358)
                      ++.+.+.+..
T Consensus       184 ~l~~~i~~~~  193 (196)
T 2atv_A          184 ELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhc
Confidence            9999987653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.84  E-value=1.5e-20  Score=163.51  Aligned_cols=119  Identities=18%  Similarity=0.247  Sum_probs=85.4

Q ss_pred             cccceEEEEEecCCCchhh-hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNER-RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r-~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+||++|++.++ ..|..|+++++++|||+|++          +..++.....|+..+.......+.|++||+
T Consensus        65 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~  134 (189)
T 1z06_A           65 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMT----------NMASFHSLPAWIEECKQHLLANDIPRILVG  134 (189)
T ss_dssp             TTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETT----------CHHHHHTHHHHHHHHHHHCCCSCCCEEEEE
T ss_pred             CCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            4556899999999999999 99999999999999999984          345555555666666554334578999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh---hhHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP---KLVKK  338 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~---~ni~~  338 (358)
                      ||+|+..++.                     ...+++..+.. .               ..+.++++||+++   +||.+
T Consensus       135 nK~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~~~~~i~~  177 (189)
T 1z06_A          135 NKCDLRSAIQ---------------------VPTDLAQKFAD-T---------------HSMPLFETSAKNPNDNDHVEA  177 (189)
T ss_dssp             ECTTCGGGCC---------------------SCHHHHHHHHH-H---------------TTCCEEECCSSSGGGGSCHHH
T ss_pred             ECccccccce---------------------eCHHHHHHHHH-H---------------cCCEEEEEeCCcCCcccCHHH
Confidence            9999965421                     12233333211 1               1245788999999   99999


Q ss_pred             HHHHHHHHHH
Q 018283          339 TFKLVDETLR  348 (358)
Q Consensus       339 vf~~i~~~i~  348 (358)
                      +|+++.+.+.
T Consensus       178 l~~~l~~~i~  187 (189)
T 1z06_A          178 IFMTLAHKLK  187 (189)
T ss_dssp             HHHHHC----
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.84  E-value=7.3e-21  Score=164.52  Aligned_cols=121  Identities=13%  Similarity=0.177  Sum_probs=88.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+.......+.|+++|+|
T Consensus        48 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~n  117 (189)
T 4dsu_A           48 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN----------NTKSFEDIHHYREQIKRVKDSEDVPMVLVGN  117 (189)
T ss_dssp             TTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHTTCSCCCEEEEEE
T ss_pred             CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence            556678999999999999999999999999999999984          4556666666776666544446789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+....                      ...+.+..+ ...+               .+.++++||+++.||+++|++
T Consensus       118 K~Dl~~~~----------------------~~~~~~~~~-~~~~---------------~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A          118 KCDLPSRT----------------------VDTKQAQDL-ARSY---------------GIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             CTTSSSCS----------------------SCHHHHHHH-HHHH---------------TCCEEECCTTTCTTHHHHHHH
T ss_pred             CccCcccc----------------------cCHHHHHHH-HHHc---------------CCeEEEEeCCCCCCHHHHHHH
Confidence            99986321                      122333322 1111               245788999999999999999


Q ss_pred             HHHHHHHhh
Q 018283          343 VDETLRRRH  351 (358)
Q Consensus       343 i~~~i~~~~  351 (358)
                      +.+.+....
T Consensus       160 l~~~~~~~~  168 (189)
T 4dsu_A          160 LVREIRKHK  168 (189)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999987543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.84  E-value=5.3e-20  Score=159.43  Aligned_cols=131  Identities=15%  Similarity=0.130  Sum_probs=88.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.... .|+..+...  .+++|++||+
T Consensus        51 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~i~~~--~~~~piilv~  118 (184)
T 1m7b_A           51 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDIS----------RPETLDSVLKKWKGEIQEF--CPNTKMLLVG  118 (184)
T ss_dssp             SSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CTTCEEEEEE
T ss_pred             CCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHHH--CCCCCEEEEE
Confidence            556789999999999999999999999999999999984          445565552 344444322  2478999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeecc-ChhhHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL-DPKLVKKTF  340 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~-d~~ni~~vf  340 (358)
                      ||+|+..+......+.     .+.    ......+++.++... +              ..+.++++||+ ++.||+++|
T Consensus       119 nK~Dl~~~~~~~~~~~-----~~~----~~~v~~~~~~~~~~~-~--------------~~~~~~e~Sa~~~~~gi~~l~  174 (184)
T 1m7b_A          119 CKSDLRTDVSTLVELS-----NHR----QTPVSYDQGANMAKQ-I--------------GAATYIECSALQSENSVRDIF  174 (184)
T ss_dssp             ECGGGGGCHHHHHHHH-----TTT----CCCCCHHHHHHHHHH-H--------------TCSEEEECBTTTBHHHHHHHH
T ss_pred             EcchhhcchhhHhhhh-----hcc----cCCCCHHHHHHHHHH-c--------------CCcEEEEeeecCCCcCHHHHH
Confidence            9999975311000000     000    011334555544221 1              11467899998 799999999


Q ss_pred             HHHHHHHHH
Q 018283          341 KLVDETLRR  349 (358)
Q Consensus       341 ~~i~~~i~~  349 (358)
                      +.+.+.+++
T Consensus       175 ~~i~~~~l~  183 (184)
T 1m7b_A          175 HVATLACVN  183 (184)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999998874

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.84  E-value=3.4e-20  Score=163.13  Aligned_cols=122  Identities=13%  Similarity=0.212  Sum_probs=87.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH---HcCCCCCCCcEEE
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV---LKQPCFEKTSFML  259 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i---~~~~~~~~~~iil  259 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+   .......+.|++|
T Consensus        53 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~piil  122 (207)
T 1vg8_A           53 DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVT----------APNTFKTLDSWRDEFLIQASPRDPENFPFVV  122 (207)
T ss_dssp             SSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHHCCSSGGGSCEEE
T ss_pred             CCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence            456689999999999999999999999999999999985          233343333344333   3322234789999


Q ss_pred             EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283          260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT  339 (358)
Q Consensus       260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v  339 (358)
                      |+||+|+....                      ...+++..+...               ...+.++++||+++.||+++
T Consensus       123 v~nK~Dl~~~~----------------------~~~~~~~~~~~~---------------~~~~~~~~~Sa~~g~gi~~l  165 (207)
T 1vg8_A          123 LGNKIDLENRQ----------------------VATKRAQAWCYS---------------KNNIPYFETSAKEAINVEQA  165 (207)
T ss_dssp             EEECTTSSCCC----------------------SCHHHHHHHHHH---------------TTSCCEEECBTTTTBSHHHH
T ss_pred             EEECCCCcccc----------------------cCHHHHHHHHHh---------------cCCceEEEEeCCCCCCHHHH
Confidence            99999985211                      123334333211               12355789999999999999


Q ss_pred             HHHHHHHHHHhh
Q 018283          340 FKLVDETLRRRH  351 (358)
Q Consensus       340 f~~i~~~i~~~~  351 (358)
                      |+++.+.+.+..
T Consensus       166 ~~~l~~~~~~~~  177 (207)
T 1vg8_A          166 FQTIARNALKQE  177 (207)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999987654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.84  E-value=6.8e-20  Score=155.48  Aligned_cols=118  Identities=13%  Similarity=0.128  Sum_probs=86.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ......+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+... ..++.|+++|+|
T Consensus        51 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~l~~~-~~~~~~iilv~n  119 (170)
T 1z0j_A           51 QNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDIT----------KEETFSTLKNWVRELRQH-GPPSIVVAIAGN  119 (170)
T ss_dssp             TTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHH-SCTTSEEEEEEE
T ss_pred             CCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh-CCCCCcEEEEEE
Confidence            556688999999999999999999999999999999984          344555555555555432 235789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..+.. .               ..+.++++||+++.|++++|++
T Consensus       120 K~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~~i~~l~~~  162 (170)
T 1z0j_A          120 KCDLTDVRE---------------------VMERDAKDYAD-S---------------IHAIFVETSAKNAININELFIE  162 (170)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHH-H---------------TTCEEEECBTTTTBSHHHHHHH
T ss_pred             CCccccccc---------------------cCHHHHHHHHH-H---------------cCCEEEEEeCCCCcCHHHHHHH
Confidence            999975421                     11233333211 1               1256789999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +.+.+.
T Consensus       163 i~~~i~  168 (170)
T 1z0j_A          163 ISRRIP  168 (170)
T ss_dssp             HHHHCC
T ss_pred             HHHHHh
Confidence            987653

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.83  E-value=5.3e-20  Score=161.23  Aligned_cols=121  Identities=17%  Similarity=0.132  Sum_probs=86.2

Q ss_pred             cccceEEEEEecCCCch-hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRN-ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~-~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+|||+|++. ++.++..||+.++++|+|+|++          +..++.....|+..+.......++|++|++
T Consensus        52 ~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~----------~~~s~~~~~~~~~~l~~~~~~~~~piilV~  121 (192)
T 2cjw_A           52 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSIT----------DRASFEKASELRIQLRRARQTEDIPIILVG  121 (192)
T ss_dssp             TTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred             CCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhhCCCCCeEEEEE
Confidence            56677889999999987 6778899999999999999984          556676666666655442223478999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+..++.                     ...+++..+- ..               ..+.+++|||++++||+++|+
T Consensus       122 NK~Dl~~~r~---------------------v~~~~~~~~a-~~---------------~~~~~~e~SA~~g~~v~~lf~  164 (192)
T 2cjw_A          122 NKSDLVRXRE---------------------VSVSEGRAXA-VV---------------FDXKFIETSAAVQHNVKELFE  164 (192)
T ss_dssp             ECTTCGGGCC---------------------SCHHHHHHHH-HH---------------TTCEEEECBTTTTBSHHHHHH
T ss_pred             echhhhcccc---------------------ccHHHHHHHH-HH---------------hCCceEEeccccCCCHHHHHH
Confidence            9999865321                     1223333221 10               124678899999999999999


Q ss_pred             HHHHHHHHh
Q 018283          342 LVDETLRRR  350 (358)
Q Consensus       342 ~i~~~i~~~  350 (358)
                      ++.+.+...
T Consensus       165 ~l~~~~~~~  173 (192)
T 2cjw_A          165 GIVRQVRLR  173 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999988643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.83  E-value=8.8e-20  Score=161.62  Aligned_cols=131  Identities=15%  Similarity=0.142  Sum_probs=89.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.+. ..|+..+...  ..+.|++||+
T Consensus        72 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~----------~~~s~~~~~~~~~~~i~~~--~~~~piilv~  139 (205)
T 1gwn_A           72 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDIS----------RPETLDSVLKKWKGEIQEF--CPNTKMLLVG  139 (205)
T ss_dssp             SSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CTTCEEEEEE
T ss_pred             CCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHH--CCCCCEEEEE
Confidence            556789999999999999999999999999999999984          44556555 3444444332  2478999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeecc-ChhhHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL-DPKLVKKTF  340 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~-d~~ni~~vf  340 (358)
                      ||+|+..+......+      .+.   .......+++..+... +              ..+.+++|||+ ++.||+++|
T Consensus       140 nK~Dl~~~~~~~~~~------~~~---~~~~v~~~~~~~~~~~-~--------------~~~~~~e~SAk~~~~gv~~lf  195 (205)
T 1gwn_A          140 CKSDLRTDVSTLVEL------SNH---RQTPVSYDQGANMAKQ-I--------------GAATYIECSALQSENSVRDIF  195 (205)
T ss_dssp             ECGGGGGCHHHHHHH------HTT---TCCCCCHHHHHHHHHH-H--------------TCSEEEECCTTTCHHHHHHHH
T ss_pred             echhhccchhhhhhh------ccc---ccCCCCHHHHHHHHHH-c--------------CCCEEEEeeeccCCcCHHHHH
Confidence            999997531100000      000   0001234445444221 1              11467899998 789999999


Q ss_pred             HHHHHHHHH
Q 018283          341 KLVDETLRR  349 (358)
Q Consensus       341 ~~i~~~i~~  349 (358)
                      +.+.+.+++
T Consensus       196 ~~l~~~~l~  204 (205)
T 1gwn_A          196 HVATLACVN  204 (205)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999998875

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.83  E-value=1.8e-20  Score=161.23  Aligned_cols=128  Identities=13%  Similarity=0.103  Sum_probs=82.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.... .|+..+...  ..+.|++||+
T Consensus        52 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~  119 (182)
T 3bwd_D           52 NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVSKKWIPELKHY--APGVPIVLVG  119 (182)
T ss_dssp             ------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CTTCCEEEEE
T ss_pred             CCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence            445678899999999999999999999999999999984          445555554 344444332  2378999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+.+++.....      ...     ......+++..+.. .+              ....++++||++++||+++|+
T Consensus       120 nK~Dl~~~~~~~~~------~~~-----~~~v~~~~~~~~~~-~~--------------~~~~~~~~Sa~~~~gi~~l~~  173 (182)
T 3bwd_D          120 TKLDLRDDKQFFID------HPG-----AVPITTVQGEELKK-LI--------------GAPAYIECSSKSQENVKGVFD  173 (182)
T ss_dssp             ECHHHHTCHHHHHH------C-------CCCCCHHHHHHHHH-HH--------------TCSEEEECCTTTCTTHHHHHH
T ss_pred             echhhhcCcccccc------ccc-----CCCCCHHHHHHHHH-Hc--------------CCCEEEEEECCCCCCHHHHHH
Confidence            99999765321000      000     00023344444321 11              013578899999999999999


Q ss_pred             HHHHHHH
Q 018283          342 LVDETLR  348 (358)
Q Consensus       342 ~i~~~i~  348 (358)
                      ++.+.++
T Consensus       174 ~l~~~i~  180 (182)
T 3bwd_D          174 AAIRVVL  180 (182)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHHh
Confidence            9988774

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.83  E-value=1.4e-20  Score=167.53  Aligned_cols=134  Identities=15%  Similarity=0.144  Sum_probs=75.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.... .|+..+...  ..++|++||+
T Consensus        78 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~  145 (214)
T 2j1l_A           78 KGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVT----------SPNSFDNIFNRWYPEVNHF--CKKVPIIVVG  145 (214)
T ss_dssp             TTEEEEEEEEEC---------------CEEEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CSSCCEEEEE
T ss_pred             CCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence            556788999999999999999999999999999999984          445565554 344444332  2478999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+..++-....+      ...   .......+++..+... +              ....++++||+++.||+++|+
T Consensus       146 nK~Dl~~~~~~~~~~------~~~---~~~~v~~~~~~~~~~~-~--------------~~~~~~~~SA~~g~gi~el~~  201 (214)
T 2j1l_A          146 CKTDLRKDKSLVNKL------RRN---GLEPVTYHRGQEMARS-V--------------GAVAYLECSARLHDNVHAVFQ  201 (214)
T ss_dssp             ECGGGGSCHHHHHHH------HHT---TCCCCCHHHHHHHHHH-T--------------TCSEEEECBTTTTBSHHHHHH
T ss_pred             EChhhhccchhhhhh------ccc---ccCcccHHHHHHHHHh-c--------------CCCEEEEecCCCCCCHHHHHH
Confidence            999997543110000      000   0001233444443211 0              113678999999999999999


Q ss_pred             HHHHHHHHhhh
Q 018283          342 LVDETLRRRHL  352 (358)
Q Consensus       342 ~i~~~i~~~~~  352 (358)
                      ++.+.+++...
T Consensus       202 ~l~~~~~~~~~  212 (214)
T 2j1l_A          202 EAAEVALSSRG  212 (214)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHhhc
Confidence            99999986543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.83  E-value=3.6e-20  Score=158.55  Aligned_cols=118  Identities=21%  Similarity=0.188  Sum_probs=87.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+.... ..+.|+++|+|
T Consensus        59 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~n  127 (179)
T 2y8e_A           59 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT----------NTNSFHQTSKWIDDVRTER-GSDVIIMLVGN  127 (179)
T ss_dssp             TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHH-TTSSEEEEEEE
T ss_pred             CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence            455688999999999999999999999999999999984          3345555555665554321 24689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..+...                ..+.++.+||+++.|++++|++
T Consensus       128 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~  170 (179)
T 2y8e_A          128 KTDLSDKRQ---------------------VSTEEGERKAKE----------------LNVMFIETSAKAGYNVKQLFRR  170 (179)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHHH----------------HTCEEEEEBTTTTBSHHHHHHH
T ss_pred             CCcccccCc---------------------CCHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence            999975421                     123333333221                1256788999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +.+.+.
T Consensus       171 l~~~~~  176 (179)
T 2y8e_A          171 VAAALP  176 (179)
T ss_dssp             HHHTCC
T ss_pred             HHHHHh
Confidence            987654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.83  E-value=5.1e-20  Score=163.04  Aligned_cols=128  Identities=13%  Similarity=0.100  Sum_probs=88.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.... .|+..+...  .+++|++||+
T Consensus        53 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~  120 (212)
T 2j0v_A           53 DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLI----------SKASYENVLKKWMPELRRF--APNVPIVLVG  120 (212)
T ss_dssp             SSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CTTCCEEEEE
T ss_pred             CCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence            556789999999999999999999999999999999984          445565554 444444332  2378999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+..++.....         .    .+....+++.++.. .+              ....++++||++++||+++|+
T Consensus       121 nK~Dl~~~~~~~~~---------~----~~~v~~~~~~~~~~-~~--------------~~~~~~~~Sa~~g~gi~~l~~  172 (212)
T 2j0v_A          121 TKLDLRDDKGYLAD---------H----TNVITSTQGEELRK-QI--------------GAAAYIECSSKTQQNVKAVFD  172 (212)
T ss_dssp             ECHHHHTCHHHHHT---------C----SSCCCHHHHHHHHH-HH--------------TCSEEEECCTTTCTTHHHHHH
T ss_pred             eCHHhhhCcccccc---------c----cCCCCHHHHHHHHH-Hc--------------CCceEEEccCCCCCCHHHHHH
Confidence            99999765321000         0    01123344444321 11              013578999999999999999


Q ss_pred             HHHHHHHHh
Q 018283          342 LVDETLRRR  350 (358)
Q Consensus       342 ~i~~~i~~~  350 (358)
                      ++.+.+++.
T Consensus       173 ~l~~~~~~~  181 (212)
T 2j0v_A          173 TAIKVVLQP  181 (212)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhhh
Confidence            999998754

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=1.1e-19  Score=158.50  Aligned_cols=130  Identities=15%  Similarity=0.169  Sum_probs=88.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.... .|+..+...  .+++|++||+
T Consensus        62 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~  129 (194)
T 2atx_A           62 GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVV----------NPASFQNVKEEWVPELKEY--APNVPFLLIG  129 (194)
T ss_dssp             SSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--STTCCEEEEE
T ss_pred             CCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence            455689999999999999999999999999999999984          445565554 445554432  2378999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+..+......      +...   .......+++.++... +              ....++++||++++||+++|+
T Consensus       130 nK~Dl~~~~~~~~~------~~~~---~~~~v~~~~~~~~~~~-~--------------~~~~~~~~Sa~~g~gi~~l~~  185 (194)
T 2atx_A          130 TQIDLRDDPKTLAR------LNDM---KEKPICVEQGQKLAKE-I--------------GACCYVECSALTQKGLKTVFD  185 (194)
T ss_dssp             ECTTSTTCHHHHHH------HTTT---TCCCCCHHHHHHHHHH-H--------------TCSCEEECCTTTCTTHHHHHH
T ss_pred             EChhhcccccchhh------cccc---cCcccCHHHHHHHHHH-c--------------CCcEEEEeeCCCCCCHHHHHH
Confidence            99999754210000      0000   0001234455444221 1              012578899999999999999


Q ss_pred             HHHHHHH
Q 018283          342 LVDETLR  348 (358)
Q Consensus       342 ~i~~~i~  348 (358)
                      ++.+.++
T Consensus       186 ~l~~~i~  192 (194)
T 2atx_A          186 EAIIAIL  192 (194)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998876

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.82  E-value=1.1e-20  Score=168.70  Aligned_cols=117  Identities=15%  Similarity=0.197  Sum_probs=88.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.....|+..+...  ..++|++||+|
T Consensus        60 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~ilv~n  127 (221)
T 3gj0_A           60 NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVT----------SRVTYKNVPNWHRDLVRV--CENIPIVLCGN  127 (221)
T ss_dssp             TTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETT----------CHHHHHTHHHHHHHHHHH--STTCCEEEEEE
T ss_pred             CCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence            556789999999999999999999999999999999984          345555555666665543  24789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+++...                       ++..+..                ...+.++++||+++.||+++|++
T Consensus       128 K~Dl~~~~~~~-----------------------~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~l~~~  168 (221)
T 3gj0_A          128 KVDIKDRKVKA-----------------------KSIVFHR----------------KKNLQYYDISAKSNYNFEKPFLW  168 (221)
T ss_dssp             CTTSSSCSSCG-----------------------GGCCHHH----------------HHTCEEEECBGGGTBTTTHHHHH
T ss_pred             CCccccccccH-----------------------HHHHHHH----------------HcCCEEEEEeCCCCCCHHHHHHH
Confidence            99996543211                       0011100                11256789999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+...
T Consensus       169 l~~~l~~~  176 (221)
T 3gj0_A          169 LARKLIGD  176 (221)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhC
Confidence            99998754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.82  E-value=1.9e-19  Score=156.99  Aligned_cols=114  Identities=18%  Similarity=0.246  Sum_probs=86.9

Q ss_pred             ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283          186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD  265 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D  265 (358)
                      .+.+.+||++|++.++..|..|+++++++|||+|++          +..++.+...|+..+....   +.|+++|+||+|
T Consensus        92 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~----------~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D  158 (208)
T 3clv_A           92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS----------NSNTLDRAKTWVNQLKISS---NYIIILVANKID  158 (208)
T ss_dssp             EEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT
T ss_pred             eeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC
Confidence            388999999999999999999999999999999984          3455556666666665432   389999999999


Q ss_pred             chhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283          266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~  345 (358)
                      + .++.                     ...+++.+++..                ..+.++.+||++++||.++|+++.+
T Consensus       159 ~-~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~l~~  200 (208)
T 3clv_A          159 K-NKFQ---------------------VDILEVQKYAQD----------------NNLLFIQTSAKTGTNIKNIFYMLAE  200 (208)
T ss_dssp             C-C-CC---------------------SCHHHHHHHHHH----------------TTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             c-cccc---------------------CCHHHHHHHHHH----------------cCCcEEEEecCCCCCHHHHHHHHHH
Confidence            3 2210                     234555554322                1256889999999999999999999


Q ss_pred             HHHHh
Q 018283          346 TLRRR  350 (358)
Q Consensus       346 ~i~~~  350 (358)
                      .+.++
T Consensus       201 ~~~~~  205 (208)
T 3clv_A          201 EIYKN  205 (208)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.82  E-value=3.6e-20  Score=160.95  Aligned_cols=124  Identities=14%  Similarity=0.163  Sum_probs=78.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.+...|+..+.......++|+++|+|
T Consensus        65 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~n  134 (190)
T 3con_A           65 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN----------NSKSFADINLYREQIKRVKDSDDVPMVLVGN  134 (190)
T ss_dssp             TTEEEEEEEEECCC-----------CTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHHTCSCCCEEEEEE
T ss_pred             CCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECc----------CHHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            455678999999999999999999999999999999984          3345555555555543322234689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+....                      ...+++.++.. .+               .+.++.+||+++.|++++|++
T Consensus       135 K~Dl~~~~----------------------~~~~~~~~~~~-~~---------------~~~~~~~Sa~~~~gi~~l~~~  176 (190)
T 3con_A          135 KCDLPTRT----------------------VDTKQAHELAK-SY---------------GIPFIETSAKTRQGVEDAFYT  176 (190)
T ss_dssp             CTTCSCCC----------------------SCHHHHHHHHH-HH---------------TCCEEECCTTTCTTHHHHHHH
T ss_pred             CCcCCccc----------------------CCHHHHHHHHH-Hc---------------CCeEEEEeCCCCCCHHHHHHH
Confidence            99986421                      12233433322 11               245788999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 018283          343 VDETLRRRHLFE  354 (358)
Q Consensus       343 i~~~i~~~~~~~  354 (358)
                      +.+.+.+...++
T Consensus       177 l~~~~~~~~~~~  188 (190)
T 3con_A          177 LVREIRQYRMKK  188 (190)
T ss_dssp             HHHHHHHHC---
T ss_pred             HHHHHHHHHHhh
Confidence            999998765443

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.82  E-value=2.1e-19  Score=158.87  Aligned_cols=133  Identities=11%  Similarity=0.207  Sum_probs=88.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHH-HHHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+|||+|++.++..|..|+++++++|+|+|++          +..++... ..|+..+...  .+++|+++|+
T Consensus        69 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~  136 (207)
T 2fv8_A           69 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVD----------SPDSLENIPEKWVPEVKHF--CPNVPIILVA  136 (207)
T ss_dssp             TTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--STTCCEEEEE
T ss_pred             CCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence            556689999999999999999999999999999999984          34455554 2333333321  2478999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+..+......      +....   ......+++..+... +              ....++++||+++.||+++|+
T Consensus       137 nK~Dl~~~~~~~~~------~~~~~---~~~v~~~~~~~~~~~-~--------------~~~~~~~~SA~~g~gi~el~~  192 (207)
T 2fv8_A          137 NKKDLRSDEHVRTE------LARMK---QEPVRTDDGRAMAVR-I--------------QAYDYLECSAKTKEGVREVFE  192 (207)
T ss_dssp             ECGGGGGCHHHHHH------HHHTT---CCCCCHHHHHHHHHH-T--------------TCSEEEECCTTTCTTHHHHHH
T ss_pred             Echhhhccccchhh------hhhcc---cCCCCHHHHHHHHHh-c--------------CCCEEEEeeCCCCCCHHHHHH
Confidence            99999754211000      00000   000223444433111 0              112678899999999999999


Q ss_pred             HHHHHHHHhh
Q 018283          342 LVDETLRRRH  351 (358)
Q Consensus       342 ~i~~~i~~~~  351 (358)
                      ++.+.+++..
T Consensus       193 ~l~~~i~~~~  202 (207)
T 2fv8_A          193 TATRAALQKR  202 (207)
T ss_dssp             HHHHHHHSCC
T ss_pred             HHHHHHHHHh
Confidence            9999987543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.81  E-value=5.3e-20  Score=154.96  Aligned_cols=118  Identities=14%  Similarity=0.165  Sum_probs=87.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.+...|+..+.......+.|+++++|
T Consensus        47 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~n  116 (166)
T 2ce2_X           47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN----------NTKSFEDIHQYREQIKRVKDSDDVPMVLVGN  116 (166)
T ss_dssp             TTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHHTCSCCCEEEEEE
T ss_pred             CCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence            456688999999999999999999999999999999984          3455555556665554433334789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+....                      ...+++.++. ..+               .+.++.+||+++.|++++|++
T Consensus       117 K~Dl~~~~----------------------~~~~~~~~~~-~~~---------------~~~~~~~Sa~~~~gi~~l~~~  158 (166)
T 2ce2_X          117 KSDLAART----------------------VESRQAQDLA-RSY---------------GIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             CTTCSCCC----------------------SCHHHHHHHH-HHH---------------TCCEEEECTTTCTTHHHHHHH
T ss_pred             chhhhhcc----------------------cCHHHHHHHH-HHc---------------CCeEEEecCCCCCCHHHHHHH
Confidence            99986421                      1123333332 111               245788999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +.+.+.
T Consensus       159 l~~~~~  164 (166)
T 2ce2_X          159 LVREIR  164 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.81  E-value=5.5e-20  Score=159.62  Aligned_cols=124  Identities=10%  Similarity=0.081  Sum_probs=81.9

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  264 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~  264 (358)
                      ..+.+.+||++|++.++..|..|+++++++++|+|+++         ...++.....|+..+...  .+++|++||+||+
T Consensus        54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~---------~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~  122 (184)
T 2zej_A           54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSK---------GQAEVDAMKPWLFNIKAR--ASSSPVILVGTHL  122 (184)
T ss_dssp             --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGG---------CHHHHHTHHHHHHHHHHH--CTTCEEEEEEECG
T ss_pred             CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCc---------chhHHHHHHHHHHHHHhh--CCCCcEEEEEECC
Confidence            57889999999999999999999999999999999852         112344445555555432  1368999999999


Q ss_pred             CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh-hHHHHHHHH
Q 018283          265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK-LVKKTFKLV  343 (358)
Q Consensus       265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~-ni~~vf~~i  343 (358)
                      |+.+++..                       .....-....|...   . +   -.....+++|||+++. ++.++|+.|
T Consensus       123 Dl~~~~~~-----------------------~~~~~~~~~~~~~~---~-~---~~~~~~~~~~Sa~~~~~~~~~l~~~i  172 (184)
T 2zej_A          123 DVSDEKQR-----------------------KACMSKITKELLNK---R-G---FPAIRDYHFVNATEESDALAKLRKTI  172 (184)
T ss_dssp             GGCCHHHH-----------------------HHHHHHHHHHTTTC---T-T---SCEEEEEEECCTTSCCHHHHHHHHHH
T ss_pred             Ccccchhh-----------------------HHHHHHHHHHHHHh---c-C---CcchhheEEEecccCchhHHHHHHHH
Confidence            99654321                       00001111111100   0 0   1112347899999995 999999999


Q ss_pred             HHHHHH
Q 018283          344 DETLRR  349 (358)
Q Consensus       344 ~~~i~~  349 (358)
                      .+.+.+
T Consensus       173 ~~~~~~  178 (184)
T 2zej_A          173 INESLN  178 (184)
T ss_dssp             HHHHHC
T ss_pred             HHHHhc
Confidence            887764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.81  E-value=2.8e-19  Score=154.07  Aligned_cols=132  Identities=14%  Similarity=0.174  Sum_probs=88.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.+.. .|+..+...  ..+.|+++|+
T Consensus        49 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~  116 (186)
T 1mh1_A           49 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLV----------SPASFENVRAKWYPEVRHH--CPNTPIILVG  116 (186)
T ss_dssp             TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--STTSCEEEEE
T ss_pred             CCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHHHh--CCCCCEEEEe
Confidence            556788999999999999999999999999999999984          445555554 344444332  2378999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+..+......      ..+.   .......+++..+...    .           ..+.++++||++++||+++|+
T Consensus       117 nK~Dl~~~~~~~~~------~~~~---~~~~v~~~~~~~~~~~----~-----------~~~~~~~~Sa~~g~gi~~l~~  172 (186)
T 1mh1_A          117 TKLDLRDDKDTIEK------LKEK---KLTPITYPQGLAMAKE----I-----------GAVKYLECSALTQRGLKTVFD  172 (186)
T ss_dssp             ECHHHHTCHHHHHH------HHHT---TCCCCCHHHHHHHHHH----T-----------TCSEEEECCTTTCTTHHHHHH
T ss_pred             Ecccccccchhhhh------hccc---ccccCCHHHHHHHHHh----c-----------CCcEEEEecCCCccCHHHHHH
Confidence            99999754210000      0000   0000233444433211    0           113678999999999999999


Q ss_pred             HHHHHHHHh
Q 018283          342 LVDETLRRR  350 (358)
Q Consensus       342 ~i~~~i~~~  350 (358)
                      ++.+.+++.
T Consensus       173 ~l~~~~~~~  181 (186)
T 1mh1_A          173 EAIRAVLCP  181 (186)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHHHHhcc
Confidence            999988643

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.81  E-value=2.4e-19  Score=157.76  Aligned_cols=131  Identities=13%  Similarity=0.186  Sum_probs=87.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.... .|+..+...  ..++|+++|+
T Consensus        69 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~  136 (201)
T 2gco_A           69 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKHF--CPNVPIILVG  136 (201)
T ss_dssp             TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--STTCCEEEEE
T ss_pred             CCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence            556689999999999999999999999999999999984          445555552 333333221  2478999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+..+......      +.+..   ......+++.++... +              ....++++||++++||+++|+
T Consensus       137 nK~Dl~~~~~~~~~------~~~~~---~~~v~~~~~~~~~~~-~--------------~~~~~~~~SA~~g~gi~~l~~  192 (201)
T 2gco_A          137 NKKDLRQDEHTRRE------LAKMK---QEPVRSEEGRDMANR-I--------------SAFGYLECSAKTKEGVREVFE  192 (201)
T ss_dssp             ECGGGTTCHHHHHH------HHTTT---CCCCCHHHHHHHHHH-T--------------TCSEEEECCTTTCTTHHHHHH
T ss_pred             ecHHhhcCccchhh------hcccc---cCcCCHHHHHHHHHh-C--------------CCcEEEEeeCCCCCCHHHHHH
Confidence            99999754211000      00000   001233444443211 0              112578899999999999999


Q ss_pred             HHHHHHHH
Q 018283          342 LVDETLRR  349 (358)
Q Consensus       342 ~i~~~i~~  349 (358)
                      ++.+.+++
T Consensus       193 ~i~~~~l~  200 (201)
T 2gco_A          193 MATRAGLQ  200 (201)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99988763

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.81  E-value=5.4e-20  Score=156.20  Aligned_cols=119  Identities=18%  Similarity=0.116  Sum_probs=83.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC-CCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~-~~~~~~~iilv~  261 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....++..+... ....+.|+++|+
T Consensus        47 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~  116 (172)
T 2erx_A           47 DKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSIT----------SRQSLEELKPIYEQICEIKGDVESIPIMLVG  116 (172)
T ss_dssp             TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETT----------CHHHHHTTHHHHHHHHHHHC---CCCEEEEE
T ss_pred             CCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence            456678999999999999999999999999999999985          334444444454444321 123478999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+..++.                     ....++..+.. .               ..+.++++||+++.||+++|+
T Consensus       117 nK~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~gi~~l~~  159 (172)
T 2erx_A          117 NKCDESPSRE---------------------VQSSEAEALAR-T---------------WKCAFMETSAKLNHNVKELFQ  159 (172)
T ss_dssp             ECGGGGGGCC---------------------SCHHHHHHHHH-H---------------HTCEEEECBTTTTBSHHHHHH
T ss_pred             Eccccccccc---------------------cCHHHHHHHHH-H---------------hCCeEEEecCCCCcCHHHHHH
Confidence            9999965421                     11222222211 1               125678899999999999999


Q ss_pred             HHHHHHH
Q 018283          342 LVDETLR  348 (358)
Q Consensus       342 ~i~~~i~  348 (358)
                      ++.+.+.
T Consensus       160 ~l~~~~~  166 (172)
T 2erx_A          160 ELLNLEK  166 (172)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHHh
Confidence            9987653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.81  E-value=2.8e-19  Score=157.92  Aligned_cols=119  Identities=15%  Similarity=0.249  Sum_probs=86.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.....|+..+.... ..++|++||+|
T Consensus        65 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~n  133 (213)
T 3cph_A           65 NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVT----------DERTFTNIKQWFKTVNEHA-NDEAQLLLVGN  133 (213)
T ss_dssp             TTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHT-TTCSEEEEEEE
T ss_pred             CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCCEEEEEE
Confidence            445588999999999999999999999999999999985          3344544455555554321 24689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+....                      ...+++..+.. .+               .+.++++||+++.||+++|++
T Consensus       134 K~Dl~~~~----------------------~~~~~~~~~~~-~~---------------~~~~~~~Sa~~~~gi~~l~~~  175 (213)
T 3cph_A          134 KSDMETRV----------------------VTADQGEALAK-EL---------------GIPFIESSAKNDDNVNEIFFT  175 (213)
T ss_dssp             CTTCSSCC----------------------SCHHHHHHHHH-HH---------------TCCEEECBTTTTBSSHHHHHH
T ss_pred             CCCCcccc----------------------cCHHHHHHHHH-Hc---------------CCEEEEEeCCCCCCHHHHHHH
Confidence            99983211                      12233333321 11               145788999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+.+.
T Consensus       176 l~~~~~~~  183 (213)
T 3cph_A          176 LAKLIQEK  183 (213)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.81  E-value=3.9e-21  Score=168.88  Aligned_cols=118  Identities=16%  Similarity=0.235  Sum_probs=79.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.....|+..+... ...+.|++||+|
T Consensus        78 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~n  146 (199)
T 3l0i_B           78 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT----------DQESFNNVKQWLQEIDRY-ASENVNKLLVGN  146 (199)
T ss_dssp             TTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CC----------CSHHHHHHHHHHHHHHSC-C-CCSEEEEC-C
T ss_pred             CCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh-ccCCCCEEEEEE
Confidence            556688999999999999999999999999999999984          456677777777776543 335789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++...  .                ....+..+                   ...+.++++||++++||+++|++
T Consensus       147 K~Dl~~~~~v~--~----------------~~~~~~~~-------------------~~~~~~~~vSA~~g~gv~~l~~~  189 (199)
T 3l0i_B          147 KCDLTTKKVVD--Y----------------TTAKEFAD-------------------SLGIPFLETSAKNATNVEQSFMT  189 (199)
T ss_dssp             CSSCC--CCCC--S----------------CC-CHHHH-------------------TTTCCBCCCCC---HHHHHHHHH
T ss_pred             CccCCccccCC--H----------------HHHHHHHH-------------------HcCCeEEEEECCCCCCHHHHHHH
Confidence            99996543211  0                11111110                   11245678999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +.+.+.
T Consensus       190 l~~~l~  195 (199)
T 3l0i_B          190 MAAEIK  195 (199)
T ss_dssp             HTTTTT
T ss_pred             HHHHHH
Confidence            987664

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.80  E-value=3.1e-19  Score=157.64  Aligned_cols=129  Identities=14%  Similarity=0.172  Sum_probs=86.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.+.. .|+..+....  .+.|++||+
T Consensus        74 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~--~~~piilv~  141 (204)
T 4gzl_A           74 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLV----------SPASFENVRAKWYPEVRHHC--PNTPIILVG  141 (204)
T ss_dssp             C-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHHC--SSCCEEEEE
T ss_pred             CCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhC--CCCCEEEEE
Confidence            556788899999999999999999999999999999984          455666654 4444443322  578999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+..++.....+.      +.   .......+++..+... +              ....++++||++++||+++|+
T Consensus       142 nK~Dl~~~~~~~~~~~------~~---~~~~v~~~~~~~~~~~-~--------------~~~~~~~~SA~~g~gi~~l~~  197 (204)
T 4gzl_A          142 TKLDLRDDKDTIEKLK------EK---KLTPITYPQGLAMAKE-I--------------GAVKYLECSALTQRGLKTVFD  197 (204)
T ss_dssp             ECHHHHTCHHHHHHHH------HT---TCCCCCHHHHHHHHHH-T--------------TCSEEEECCTTTCTTHHHHHH
T ss_pred             echhhccchhhhhhhh------cc---ccccccHHHHHHHHHh-c--------------CCcEEEEeeCCCCCCHHHHHH
Confidence            9999976432100000      00   0000233444443211 0              113478899999999999999


Q ss_pred             HHHHHH
Q 018283          342 LVDETL  347 (358)
Q Consensus       342 ~i~~~i  347 (358)
                      ++.+.+
T Consensus       198 ~l~~~~  203 (204)
T 4gzl_A          198 EAIRAV  203 (204)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            998754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.80  E-value=2.5e-19  Score=159.26  Aligned_cols=118  Identities=12%  Similarity=0.131  Sum_probs=83.3

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  264 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~  264 (358)
                      ..+.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.+...|+..+... ...+.|++||+||+
T Consensus        59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~  127 (218)
T 4djt_A           59 NVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVT----------SRITCQNLARWVKEFQAV-VGNEAPIVVCANKI  127 (218)
T ss_dssp             CEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHH-HCSSSCEEEEEECT
T ss_pred             cEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECC
Confidence            3388999999999999999999999999999999985          333444444444443321 12358999999999


Q ss_pred             CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283          265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD  344 (358)
Q Consensus       265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~  344 (358)
                      |+..++.                     ...+.+..+             .   ....+.++++||+++.||+++|+++.
T Consensus       128 Dl~~~~~---------------------~~~~~~~~~-------------~---~~~~~~~~~~Sa~~g~gv~~l~~~l~  170 (218)
T 4djt_A          128 DIKNRQK---------------------ISKKLVMEV-------------L---KGKNYEYFEISAKTAHNFGLPFLHLA  170 (218)
T ss_dssp             TCC-------------------------CCHHHHHHH-------------T---TTCCCEEEEEBTTTTBTTTHHHHHHH
T ss_pred             CCccccc---------------------cCHHHHHHH-------------H---HHcCCcEEEEecCCCCCHHHHHHHHH
Confidence            9865321                     112222222             0   12346789999999999999999999


Q ss_pred             HHHHHh
Q 018283          345 ETLRRR  350 (358)
Q Consensus       345 ~~i~~~  350 (358)
                      +.+...
T Consensus       171 ~~~~~~  176 (218)
T 4djt_A          171 RIFTGR  176 (218)
T ss_dssp             HHHHCC
T ss_pred             HHHhcc
Confidence            988653

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.79  E-value=1.2e-19  Score=158.37  Aligned_cols=119  Identities=18%  Similarity=0.141  Sum_probs=84.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC-CCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~-~~~~~~~iilv~  261 (358)
                      +...+.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.....++..+... ....+.|+++|+
T Consensus        52 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~piilv~  121 (199)
T 2gf0_A           52 DKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVT----------SKQSLEELGPIYKLIVQIKGSVEDIPVMLVG  121 (199)
T ss_dssp             TTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETT----------CHHHHHTTHHHHHHHHHHHSCGGGSCEEEEE
T ss_pred             CCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            556778999999999999999999999999999999985          333444433344333221 113468999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+..+.                      ...+++..+.. .               ..+.++++||++++||+++|+
T Consensus       122 nK~Dl~~~~----------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~gi~~l~~  163 (199)
T 2gf0_A          122 NKCDETQRE----------------------VDTREAQAVAQ-E---------------WKCAFMETSAKMNYNVKELFQ  163 (199)
T ss_dssp             ECTTCSSCS----------------------SCHHHHHHHHH-H---------------HTCEEEECBTTTTBSHHHHHH
T ss_pred             ECccCCccc----------------------cCHHHHHHHHH-H---------------hCCeEEEEecCCCCCHHHHHH
Confidence            999986421                      12233333311 1               125678899999999999999


Q ss_pred             HHHHHHHH
Q 018283          342 LVDETLRR  349 (358)
Q Consensus       342 ~i~~~i~~  349 (358)
                      ++.+.+..
T Consensus       164 ~l~~~~~~  171 (199)
T 2gf0_A          164 ELLTLETR  171 (199)
T ss_dssp             HHHHHCSS
T ss_pred             HHHHHHhh
Confidence            99987654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.79  E-value=3.6e-18  Score=161.13  Aligned_cols=131  Identities=14%  Similarity=0.161  Sum_probs=88.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.+.. .|+..+...  ..++|++||+
T Consensus       199 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~  266 (332)
T 2wkq_A          199 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLV----------SPASFHHVRAKWYPEVRHH--CPNTPIILVG  266 (332)
T ss_dssp             TTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CTTSCEEEEE
T ss_pred             CCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhh--CCCCcEEEEE
Confidence            556678889999999999999999999999999999984          445565554 344444332  1378999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+..+.-....      +....   ......+++.+|....               ....++++||++++||+++|+
T Consensus       267 nK~Dl~~~~~~~~~------~~~~~---~~~v~~~~~~~~~~~~---------------~~~~~~~~Sa~~~~gi~~l~~  322 (332)
T 2wkq_A          267 TKLDLRDDKDTIEK------LKEKK---LTPITYPQGLAMAKEI---------------GAVKYLECSALTQRGLKTVFD  322 (332)
T ss_dssp             ECHHHHTCHHHHHH------HHHTT---CCCCCHHHHHHHHHHT---------------TCSEEEECCTTTCTTHHHHHH
T ss_pred             Echhcccccchhhh------ccccc---cccccHHHHHHHHHHc---------------CCcEEEEecCCCCcCHHHHHH
Confidence            99999653210000      00000   0012344454442210               113678899999999999999


Q ss_pred             HHHHHHHH
Q 018283          342 LVDETLRR  349 (358)
Q Consensus       342 ~i~~~i~~  349 (358)
                      .+.+.+++
T Consensus       323 ~l~~~~~~  330 (332)
T 2wkq_A          323 EAIRAVLC  330 (332)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99988864

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.78  E-value=5.6e-18  Score=148.72  Aligned_cols=120  Identities=19%  Similarity=0.232  Sum_probs=87.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ++..+.+.+||++|++.++..|..|+++++++|+|+|++          +..++.+...|+..+... ...+.|+++++|
T Consensus        50 ~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~n  118 (199)
T 2f9l_A           50 DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIA----------KHLTYENVERWLKELRDH-ADSNIVIMLVGN  118 (199)
T ss_dssp             TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred             CCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh-cCCCCeEEEEEE
Confidence            566788999999999999999999999999999999984          333444444555544321 224689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+...+-                     ....++..+...                ..+.++.|||+|+.+++++|+.
T Consensus       119 K~Dl~~~~~---------------------~~~~~a~~l~~~----------------~~~~~~d~Sal~~~~i~~l~~~  161 (199)
T 2f9l_A          119 KSDLRHLRA---------------------VPTDEARAFAEK----------------NNLSFIETSALDSTNVEEAFKN  161 (199)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred             CcccccccC---------------------cCHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence            999965321                     123344433211                1255677999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+.+.
T Consensus       162 l~~~~~~~  169 (199)
T 2f9l_A          162 ILTEIYRI  169 (199)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.64  E-value=1.9e-20  Score=164.92  Aligned_cols=129  Identities=15%  Similarity=0.169  Sum_probs=83.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHH-HHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~iilv~  261 (358)
                      +...+.+.+|||+|++.++..|..|+++++++|+|+|++          +..++.+.. .|+..+...  ..++|+++|+
T Consensus        74 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~----------~~~s~~~~~~~~~~~l~~~--~~~~piilv~  141 (204)
T 3th5_A           74 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLV----------SPASFENVRAKWYPEVRHH--CPNTPIILVG  141 (204)
Confidence            455678899999999999999999999999999999984          344455544 344333221  2378999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE-EEEEeeccChhhHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKLVKKTF  340 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~d~~ni~~vf  340 (358)
                      ||+|+..+......+.      ...   ......+++..+..                ...+ .++++||++++||+++|
T Consensus       142 NK~Dl~~~~~~~~~~~------~~~---~~~v~~~~~~~~~~----------------~~~~~~~~~vSA~~g~gi~~l~  196 (204)
T 3th5_A          142 TKLDLRDDKDTIEKLK------EKK---LTPITYPQGLAMAK----------------EIGAVKYLECSALTQRGLKTVF  196 (204)
Confidence            9999975431110000      000   00011122222210                1122 56789999999999999


Q ss_pred             HHHHHHHH
Q 018283          341 KLVDETLR  348 (358)
Q Consensus       341 ~~i~~~i~  348 (358)
                      +++.+.++
T Consensus       197 ~~l~~~il  204 (204)
T 3th5_A          197 DEAIRAVL  204 (204)
Confidence            99987653

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.77  E-value=2.7e-18  Score=146.93  Aligned_cols=124  Identities=11%  Similarity=0.094  Sum_probs=83.3

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ..+..+.+|||+|++.++..|..++.+++++|+|+|+++           .....+.+.+..+..    .++|+++|+||
T Consensus        52 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-----------~~~~~~~~~l~~~~~----~~~p~ilv~nK  116 (178)
T 2lkc_A           52 VNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADD-----------GVMPQTVEAINHAKA----ANVPIIVAINK  116 (178)
T ss_dssp             ETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTC-----------CCCHHHHHHHHHHGG----GSCCEEEEEET
T ss_pred             eCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHh----CCCCEEEEEEC
Confidence            345678999999999999999999999999999999752           112334444444422    36899999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      +|+..+.                        .++...++. .+...     + ......+.++++||++++||+++|+++
T Consensus       117 ~Dl~~~~------------------------~~~~~~~~~-~~~~~-----~-~~~~~~~~~~~~Sa~~~~gv~~l~~~l  165 (178)
T 2lkc_A          117 MDKPEAN------------------------PDRVMQELM-EYNLV-----P-EEWGGDTIFCKLSAKTKEGLDHLLEMI  165 (178)
T ss_dssp             TTSSCSC------------------------HHHHHHHHT-TTTCC-----B-TTTTSSEEEEECCSSSSHHHHHHHHHH
T ss_pred             ccCCcCC------------------------HHHHHHHHH-hcCcC-----h-hHcCCcccEEEEecCCCCCHHHHHHHH
Confidence            9986421                        111111110 00000     0 000123678899999999999999999


Q ss_pred             HHHHHHhhhh
Q 018283          344 DETLRRRHLF  353 (358)
Q Consensus       344 ~~~i~~~~~~  353 (358)
                      .+.+....++
T Consensus       166 ~~~~~~~~~~  175 (178)
T 2lkc_A          166 LLVSEMEELK  175 (178)
T ss_dssp             HHHHHHTTTT
T ss_pred             HHhhhhhccc
Confidence            9988765543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.76  E-value=4.9e-18  Score=144.60  Aligned_cols=108  Identities=15%  Similarity=0.154  Sum_probs=74.4

Q ss_pred             cceEEEEEecCCCchhh------hhHhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc
Q 018283          185 SGEVYRLFDVGGQRNER------RKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS  256 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r------~~w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~  256 (358)
                      .+..+.+|||+|++.++      .++..|++  +++++++|+|.++          .++.   ..|+..+..    .++|
T Consensus        48 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~----------~~~~---~~~~~~~~~----~~~p  110 (165)
T 2wji_A           48 NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA----------LERN---LYLTLQLME----MGAN  110 (165)
T ss_dssp             TTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTC----------HHHH---HHHHHHHHH----TTCC
T ss_pred             CCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCc----------hhHh---HHHHHHHHh----cCCC
Confidence            45789999999999875      45577886  8999999999852          2222   334444433    2689


Q ss_pred             EEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhH
Q 018283          257 FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLV  336 (358)
Q Consensus       257 iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni  336 (358)
                      +++++||+|+..++...                   ....   . +.+.+               .+.+++|||++++||
T Consensus       111 ~ilv~nK~Dl~~~~~~~-------------------~~~~---~-~~~~~---------------~~~~~~~SA~~~~~v  152 (165)
T 2wji_A          111 LLLALNKMDLAKSLGIE-------------------IDVD---K-LEKIL---------------GVKVVPLSAAKKMGI  152 (165)
T ss_dssp             EEEEEECHHHHHHTTCC-------------------CCHH---H-HHHHH---------------TSCEEECBGGGTBSH
T ss_pred             EEEEEEchHhccccChh-------------------hHHH---H-HHHHh---------------CCCEEEEEcCCCCCH
Confidence            99999999997543210                   1111   1 11111               134788999999999


Q ss_pred             HHHHHHHHHHH
Q 018283          337 KKTFKLVDETL  347 (358)
Q Consensus       337 ~~vf~~i~~~i  347 (358)
                      +++|+++.+.+
T Consensus       153 ~~l~~~l~~~~  163 (165)
T 2wji_A          153 EELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.75  E-value=1.4e-17  Score=144.88  Aligned_cols=111  Identities=11%  Similarity=0.144  Sum_probs=76.1

Q ss_pred             EEEEEecCC----------CchhhhhHhhhhcCC---cEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          188 VYRLFDVGG----------QRNERRKWIHLFEGV---SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       188 ~l~i~D~~G----------q~~~r~~w~~y~~~~---~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      .+.+|||+|          ++.++..|..|++++   +++|+|+|.++          ..+..+ ..++..+..    .+
T Consensus        70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~-~~~~~~~~~----~~  134 (195)
T 1svi_A           70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRH----------APSNDD-VQMYEFLKY----YG  134 (195)
T ss_dssp             TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTS----------CCCHHH-HHHHHHHHH----TT
T ss_pred             cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCC----------CCCHHH-HHHHHHHHH----cC
Confidence            589999999          899999999999887   99999999852          122211 122222222    36


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      .|+++|+||+|+..++                       ......+.+.+.+.           ....+.++++||++++
T Consensus       135 ~p~i~v~nK~Dl~~~~-----------------------~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~  180 (195)
T 1svi_A          135 IPVIVIATKADKIPKG-----------------------KWDKHAKVVRQTLN-----------IDPEDELILFSSETKK  180 (195)
T ss_dssp             CCEEEEEECGGGSCGG-----------------------GHHHHHHHHHHHHT-----------CCTTSEEEECCTTTCT
T ss_pred             CCEEEEEECcccCChH-----------------------HHHHHHHHHHHHHc-----------ccCCCceEEEEccCCC
Confidence            8999999999986432                       12222222222221           0123578899999999


Q ss_pred             hHHHHHHHHHHHH
Q 018283          335 LVKKTFKLVDETL  347 (358)
Q Consensus       335 ni~~vf~~i~~~i  347 (358)
                      ||+++|+++.+.+
T Consensus       181 gv~~l~~~l~~~l  193 (195)
T 1svi_A          181 GKDEAWGAIKKMI  193 (195)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998765

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.75  E-value=9.2e-18  Score=158.00  Aligned_cols=134  Identities=17%  Similarity=0.178  Sum_probs=88.6

Q ss_pred             eccCceeeEeeccCCCCc-ccceEEEEEecCCCchh-----hhhHhhhhcCCcEEEEEEEccccccccccccccchHH--
Q 018283          166 VRTTGVVEIQFSPVGEHK-KSGEVYRLFDVGGQRNE-----RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMM--  237 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~-~~~~~l~i~D~~Gq~~~-----r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~--  237 (358)
                      .+|.++....+      . .+.+.+.+||++|++.+     +..|..||++++++|+|+|++          +..++.  
T Consensus        36 ~~Ti~~~~~~~------~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t----------~~~s~~~l   99 (307)
T 3r7w_A           36 GATIDVEHSHL------RFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVE----------STEVLKDI   99 (307)
T ss_dssp             CCCCSEEEEEE------EETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETT----------CSCHHHHH
T ss_pred             CCccceEEEEE------EeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECC----------ChhhHHHH
Confidence            46777666554      2 24789999999999999     889999999999999999985          334443  


Q ss_pred             -HHHHHHHHHHcCCCCCCCcEEEEeeCCCchh--hhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcC
Q 018283          238 -ETKELFDWVLKQPCFEKTSFMLFLNKFDIFE--KKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST  314 (358)
Q Consensus       238 -~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~--eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~  314 (358)
                       .+..++..+...  .+++|++|++||+|+..  ++...        +         ....+++.++     ...   ..
T Consensus       100 ~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~--------~---------~v~~~~~~~~-----~~~---~g  152 (307)
T 3r7w_A          100 EIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREEL--------F---------QIMMKNLSET-----SSE---FG  152 (307)
T ss_dssp             HHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHH--------H---------HHHHHHHHHH-----HHT---TT
T ss_pred             HHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHH--------H---------HHHHHHHHHH-----HHH---cC
Confidence             334445554332  34789999999999965  22100        0         0001222222     110   00


Q ss_pred             CCCCCCceEEEEEeeccChhhHHHHHHHHHHHHH
Q 018283          315 APDRVDRVFKIYRTTALDPKLVKKTFKLVDETLR  348 (358)
Q Consensus       315 ~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~  348 (358)
                           -..+.+++|||++ .++.++|..+...++
T Consensus       153 -----~~~~~~~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          153 -----FPNLIGFPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             -----CCSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred             -----CCCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence                 0026789999999 899999999877653

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.75  E-value=2.9e-17  Score=143.44  Aligned_cols=117  Identities=16%  Similarity=0.202  Sum_probs=83.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ++..+.+.+||++|+++++..|..|+++++++++|+|++          +..++.+...|+..+... ...+.|+++++|
T Consensus        74 ~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~n  142 (191)
T 1oix_A           74 DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIA----------KHLTYENVERWLKELRDH-ADSNIVIMLVGN  142 (191)
T ss_dssp             TTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETT----------CHHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh-cCCCCcEEEEEE
Confidence            556678889999999999999999999999999999984          233344434455444321 123679999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+.+.+.                     .....+..+..+                ..+.++.|||+|+.+++++|+.
T Consensus       143 K~Dl~~~~~---------------------~~~~~a~~l~~~----------------~~~~~ld~Sald~~~v~~l~~~  185 (191)
T 1oix_A          143 KSDLRHLRA---------------------VPTDEARAFAEK----------------NGLSFIETSALDSTNVEAAFQT  185 (191)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred             Ccccccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence            999965321                     123444443211                1255677999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      +.+.+
T Consensus       186 l~~~i  190 (191)
T 1oix_A          186 ILTEI  190 (191)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98765

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.74  E-value=1.1e-17  Score=145.03  Aligned_cols=113  Identities=17%  Similarity=0.215  Sum_probs=76.7

Q ss_pred             eEEEEEecCC----------CchhhhhHhhhhcCC---cEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283          187 EVYRLFDVGG----------QRNERRKWIHLFEGV---SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE  253 (358)
Q Consensus       187 ~~l~i~D~~G----------q~~~r~~w~~y~~~~---~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~  253 (358)
                      ..+.+|||+|          ++.++..|..|++++   +++++|+|.++        ...........++...       
T Consensus        68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~--------~~~~~~~~~~~~~~~~-------  132 (195)
T 3pqc_A           68 SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRI--------PPQDSDLMMVEWMKSL-------  132 (195)
T ss_dssp             TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTS--------CCCHHHHHHHHHHHHT-------
T ss_pred             CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCC--------CCCHHHHHHHHHHHHc-------
Confidence            4578999999          888999999999877   89999999742        1112222223333322       


Q ss_pred             CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283          254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP  333 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~  333 (358)
                      +.|+++|+||+|+..+.                       ......+.+...+..           ...+.++++||+++
T Consensus       133 ~~p~i~v~nK~Dl~~~~-----------------------~~~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~  178 (195)
T 3pqc_A          133 NIPFTIVLTKMDKVKMS-----------------------ERAKKLEEHRKVFSK-----------YGEYTIIPTSSVTG  178 (195)
T ss_dssp             TCCEEEEEECGGGSCGG-----------------------GHHHHHHHHHHHHHS-----------SCCSCEEECCTTTC
T ss_pred             CCCEEEEEEChhcCChH-----------------------HHHHHHHHHHHHHhh-----------cCCCceEEEecCCC
Confidence            58999999999986431                       122222222222221           12356888999999


Q ss_pred             hhHHHHHHHHHHHHH
Q 018283          334 KLVKKTFKLVDETLR  348 (358)
Q Consensus       334 ~ni~~vf~~i~~~i~  348 (358)
                      +||+++|+++.+.+.
T Consensus       179 ~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          179 EGISELLDLISTLLK  193 (195)
T ss_dssp             TTHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhh
Confidence            999999999998774

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.74  E-value=1.1e-16  Score=143.50  Aligned_cols=126  Identities=19%  Similarity=0.182  Sum_probs=80.7

Q ss_pred             cccceEEEEEecCCC------chh---hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283          183 KKSGEVYRLFDVGGQ------RNE---RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE  253 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq------~~~---r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~  253 (358)
                      ......+.+|||+|+      +..   ...+..++..++++|||+|+++-        ..-.......++..+...  ..
T Consensus        72 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~--------~s~~~~~~~~~~~~l~~~--~~  141 (228)
T 2qu8_A           72 DHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQ--------CGLTIKEQINLFYSIKSV--FS  141 (228)
T ss_dssp             EETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCT--------TSSCHHHHHHHHHHHHTC--C-
T ss_pred             ecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccc--------cCcchHHHHHHHHHHHHh--hc
Confidence            345688999999999      331   23345678899999999998631        111134456667666543  34


Q ss_pred             CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283          254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP  333 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~  333 (358)
                      +.|+++|+||+|+...+.                     ...+  .......+...         ....+.++++||+++
T Consensus       142 ~~piilv~nK~Dl~~~~~---------------------~~~~--~~~~~~~~~~~---------~~~~~~~~~~SA~~g  189 (228)
T 2qu8_A          142 NKSIVIGFNKIDKCNMDS---------------------LSID--NKLLIKQILDN---------VKNPIKFSSFSTLTG  189 (228)
T ss_dssp             CCCEEEEEECGGGCC--C---------------------CCHH--HHHHHHHHHHH---------CCSCEEEEECCTTTC
T ss_pred             CCcEEEEEeCcccCCchh---------------------hHHH--HHHHHHHHHHh---------cCCCceEEEEecccC
Confidence            789999999999965321                     0001  00111112111         011267889999999


Q ss_pred             hhHHHHHHHHHHHHHHh
Q 018283          334 KLVKKTFKLVDETLRRR  350 (358)
Q Consensus       334 ~ni~~vf~~i~~~i~~~  350 (358)
                      +||.++|+++.+.+.+.
T Consensus       190 ~gi~~l~~~l~~~i~~~  206 (228)
T 2qu8_A          190 VGVEQAKITACELLKND  206 (228)
T ss_dssp             TTHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999998754

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.72  E-value=1.8e-17  Score=139.33  Aligned_cols=107  Identities=16%  Similarity=0.127  Sum_probs=72.7

Q ss_pred             ccceEEEEEecCCCch-------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc
Q 018283          184 KSGEVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS  256 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~-------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~  256 (358)
                      ..+..+.+||++|+..       ++..|..++++++++|+|+|.++-         .....   .++...+..   .+.|
T Consensus        46 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~---~~~~~~~~~---~~~p  110 (161)
T 2dyk_A           46 TDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAE---------LTQAD---YEVAEYLRR---KGKP  110 (161)
T ss_dssp             ETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSC---------CCHHH---HHHHHHHHH---HTCC
T ss_pred             eCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCc---------ccHhH---HHHHHHHHh---cCCC
Confidence            3456889999999987       577888999999999999998531         11111   122222221   3689


Q ss_pred             EEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE-EEEEeeccChhh
Q 018283          257 FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKL  335 (358)
Q Consensus       257 iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~d~~n  335 (358)
                      +++|+||+|+.+++..   .      .++                     ..            ..+ .++++||+++.|
T Consensus       111 ~ilv~nK~Dl~~~~~~---~------~~~---------------------~~------------~~~~~~~~~Sa~~~~g  148 (161)
T 2dyk_A          111 VILVATKVDDPKHELY---L------GPL---------------------YG------------LGFGDPIPTSSEHARG  148 (161)
T ss_dssp             EEEEEECCCSGGGGGG---C------GGG---------------------GG------------GSSCSCEECBTTTTBS
T ss_pred             EEEEEECcccccchHh---H------HHH---------------------Hh------------CCCCCeEEEecccCCC
Confidence            9999999999764210   0      000                     00            001 357899999999


Q ss_pred             HHHHHHHHHHHH
Q 018283          336 VKKTFKLVDETL  347 (358)
Q Consensus       336 i~~vf~~i~~~i  347 (358)
                      ++++|+++.+.+
T Consensus       149 v~~l~~~l~~~l  160 (161)
T 2dyk_A          149 LEELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhC
Confidence            999999988753

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.72  E-value=5.4e-17  Score=140.37  Aligned_cols=113  Identities=13%  Similarity=0.160  Sum_probs=79.2

Q ss_pred             cccceEEEEEecCCCchhh------hhHhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNER------RKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r------~~w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ...+..+.+|||+|++.++      ..|..|+.  +++++++|+|.+.             +.....++..+..    .+
T Consensus        50 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-------------~~~~~~~~~~~~~----~~  112 (188)
T 2wjg_A           50 EYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA-------------LERNLYLTLQLME----MG  112 (188)
T ss_dssp             EETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG-------------HHHHHHHHHHHHT----TT
T ss_pred             EeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh-------------HHHHHHHHHHHHh----cC
Confidence            4456889999999999875      56888886  5999999999742             2333445555543    36


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      .|+++++||+|+..++...                   ....+    +.+.+               .+.++++||++++
T Consensus       113 ~piilv~nK~Dl~~~~~~~-------------------~~~~~----~~~~~---------------~~~~~~~Sa~~~~  154 (188)
T 2wjg_A          113 ANLLLALNKMDLAKSLGIE-------------------IDVDK----LEKIL---------------GVKVVPLSAAKKM  154 (188)
T ss_dssp             CCEEEEEECHHHHHHTTCC-------------------CCHHH----HHHHH---------------TSCEEECBGGGTB
T ss_pred             CCEEEEEEhhhccccccch-------------------HHHHH----HHHHh---------------CCCeEEEEecCCC
Confidence            8999999999997653210                   11111    11111               1457889999999


Q ss_pred             hHHHHHHHHHHHHHHh
Q 018283          335 LVKKTFKLVDETLRRR  350 (358)
Q Consensus       335 ni~~vf~~i~~~i~~~  350 (358)
                      ||.++|+++.+.+...
T Consensus       155 ~v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          155 GIEELKKAISIAVKDK  170 (188)
T ss_dssp             SHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999887543

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.72  E-value=6.5e-18  Score=154.81  Aligned_cols=118  Identities=12%  Similarity=0.106  Sum_probs=81.7

Q ss_pred             cccceEEEEEe-----------------------cCCCchhhhhHhhhhc---------------------CCcEEEEEE
Q 018283          183 KKSGEVYRLFD-----------------------VGGQRNERRKWIHLFE---------------------GVSAVIFCA  218 (358)
Q Consensus       183 ~~~~~~l~i~D-----------------------~~Gq~~~r~~w~~y~~---------------------~~~~iIfv~  218 (358)
                      +...+.+.+||                       ++||++++.+|..||+                     +++++|+|+
T Consensus        91 ~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~  170 (255)
T 3c5h_A           91 DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGI  170 (255)
T ss_dssp             -----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEE
T ss_pred             CCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEE
Confidence            45678999999                       9999999999999998                     899999999


Q ss_pred             Ecccccccccccccc--chHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHH
Q 018283          219 AISEYDQTLFEDEQK--NRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIE  296 (358)
Q Consensus       219 dls~~d~~~~~~~~~--~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~  296 (358)
                      |++          +.  .++.....|+..+.......++|++||+||+|+..++.                       ++
T Consensus       171 D~t----------~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~-----------------------v~  217 (255)
T 3c5h_A          171 DVS----------RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY-----------------------IR  217 (255)
T ss_dssp             ECB----------C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH-----------------------HH
T ss_pred             ECC----------CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH-----------------------HH
Confidence            984          33  55666566666554321124689999999999854321                       12


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHH
Q 018283          297 NAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLR  348 (358)
Q Consensus       297 ~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~  348 (358)
                      ++.++..    .           ...+.++++||+++.||+++|+++.+.+.
T Consensus       218 ~~~~~~~----~-----------~~~~~~~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          218 DAHTFAL----S-----------KKNLQVVETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             HHHHHHH----T-----------SSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHH----h-----------cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            2222211    0           11356789999999999999999988763

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.70  E-value=7e-17  Score=163.13  Aligned_cols=115  Identities=13%  Similarity=0.087  Sum_probs=78.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..+..|+++++++|+|+|++.          .+.+..+...+....     .+.|++||+|
T Consensus        94 ~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~----------~~~~~~~~~~l~~~~-----~~~pvilV~N  158 (535)
T 3dpu_A           94 ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT----------DSNKHYWLRHIEKYG-----GKSPVIVVMN  158 (535)
T ss_dssp             TTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGG----------GGGHHHHHHHHHHHS-----SSCCEEEEEC
T ss_pred             CCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCC----------chhHHHHHHHHHHhC-----CCCCEEEEEE
Confidence            4567899999999999999999999999999999999853          244444444444431     3689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++.++    +.            ...+.++.+||++++||+++|+.
T Consensus       159 K~Dl~~~~~---------------------v~~~~~~~~----~~------------~~~~~~~~vSA~~g~gi~eL~~~  201 (535)
T 3dpu_A          159 KIDENPSYN---------------------IEQKKINER----FP------------AIENRFHRISCKNGDGVESIAKS  201 (535)
T ss_dssp             CTTTCTTCC---------------------CCHHHHHHH----CG------------GGTTCEEECCC-----CTTHHHH
T ss_pred             CCCcccccc---------------------cCHHHHHHH----HH------------hcCCceEEEecCcccCHHHHHHH
Confidence            999864321                     122222222    11            11234788999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.+..
T Consensus       202 l~~~~~~  208 (535)
T 3dpu_A          202 LKSAVLH  208 (535)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHhc
Confidence            9988754

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.69  E-value=5.2e-17  Score=139.49  Aligned_cols=107  Identities=18%  Similarity=0.219  Sum_probs=70.9

Q ss_pred             cceEEEEEecCCCchhh---------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283          185 SGEVYRLFDVGGQRNER---------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT  255 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r---------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~  255 (358)
                      .+..+.+|||+|++.+.         +.| .++++++++|+|+|.++..       +..    ...|+..+... ...++
T Consensus        50 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~ad~~i~v~D~~~~~-------s~~----~~~~~~~~~~~-~~~~~  116 (172)
T 2gj8_A           50 DGMPLHIIDTAGLREASDEVERIGIERAW-QEIEQADRVLFMVDGTTTD-------AVD----PAEIWPEFIAR-LPAKL  116 (172)
T ss_dssp             TTEEEEEEECCCCSCCSSHHHHHHHHHHH-HHHHTCSEEEEEEETTTCC-------CCS----HHHHCHHHHHH-SCTTC
T ss_pred             CCeEEEEEECCCcccchhHHHHHHHHHHH-HHHHhCCEEEEEEECCCCC-------CHH----HHHHHHHHHHh-cccCC
Confidence            44678999999997532         122 4689999999999986421       111    12344444332 12468


Q ss_pred             cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283          256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL  335 (358)
Q Consensus       256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n  335 (358)
                      |+++|+||+|+..+...        +. .                                   ...+.+++|||++++|
T Consensus       117 p~ilv~NK~Dl~~~~~~--------~~-~-----------------------------------~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A          117 PITVVRNKADITGETLG--------MS-E-----------------------------------VNGHALIRLSARTGEG  152 (172)
T ss_dssp             CEEEEEECHHHHCCCCE--------EE-E-----------------------------------ETTEEEEECCTTTCTT
T ss_pred             CEEEEEECccCCcchhh--------hh-h-----------------------------------ccCCceEEEeCCCCCC
Confidence            99999999998543110        00 0                                   0125678899999999


Q ss_pred             HHHHHHHHHHHHH
Q 018283          336 VKKTFKLVDETLR  348 (358)
Q Consensus       336 i~~vf~~i~~~i~  348 (358)
                      |+++|+++.+.+-
T Consensus       153 v~~l~~~l~~~~~  165 (172)
T 2gj8_A          153 VDVLRNHLKQSMG  165 (172)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.68  E-value=3.1e-17  Score=141.79  Aligned_cols=118  Identities=15%  Similarity=0.218  Sum_probs=72.4

Q ss_pred             EEEEEecCC-----------CchhhhhHhhhhcC-CcEEEEEEEccccccccccccccchHHHHH-------------HH
Q 018283          188 VYRLFDVGG-----------QRNERRKWIHLFEG-VSAVIFCAAISEYDQTLFEDEQKNRMMETK-------------EL  242 (358)
Q Consensus       188 ~l~i~D~~G-----------q~~~r~~w~~y~~~-~~~iIfv~dls~~d~~~~~~~~~~~l~~~~-------------~~  242 (358)
                      .+.+|||+|           ++.++..|..|+++ ++++++|+++.          +..++.+..             ..
T Consensus        45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~----------d~~s~~~~~~~~~~~~~~~~~~~~  114 (190)
T 2cxx_A           45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVV----------DGKAAPEIIKRWEKRGEIPIDVEF  114 (190)
T ss_dssp             TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEE----------ETTHHHHHHHHHHHTTCCCHHHHH
T ss_pred             CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEE----------cchhhhhHHHhhhccCccHHHHHH
Confidence            689999999           88999999999987 66555555542          122222221             12


Q ss_pred             HHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCce
Q 018283          243 FDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRV  322 (358)
Q Consensus       243 ~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~  322 (358)
                      +..+..    .++|+++|+||+|+..++                         .+..+.+.+++...+        ....
T Consensus       115 ~~~~~~----~~~piilv~nK~Dl~~~~-------------------------~~~~~~~~~~~~~~~--------~~~~  157 (190)
T 2cxx_A          115 YQFLRE----LDIPTIVAVNKLDKIKNV-------------------------QEVINFLAEKFEVPL--------SEID  157 (190)
T ss_dssp             HHHHHH----TTCCEEEEEECGGGCSCH-------------------------HHHHHHHHHHHTCCG--------GGHH
T ss_pred             HHHHHh----cCCceEEEeehHhccCcH-------------------------HHHHHHHHHHhhhhh--------hccC
Confidence            222211    368999999999986432                         111112222221000        0001


Q ss_pred             EEEEEeeccChhhHHHHHHHHHHHHHHhhh
Q 018283          323 FKIYRTTALDPKLVKKTFKLVDETLRRRHL  352 (358)
Q Consensus       323 ~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~  352 (358)
                      ..++++||++++||+++|+++.+.+.+..-
T Consensus       158 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          158 KVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             HHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             CcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence            346889999999999999999998876543

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.68  E-value=3.5e-16  Score=139.18  Aligned_cols=123  Identities=14%  Similarity=0.188  Sum_probs=79.8

Q ss_pred             ccceEEEEEecCC----------CchhhhhHhhhhcC---CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC
Q 018283          184 KSGEVYRLFDVGG----------QRNERRKWIHLFEG---VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP  250 (358)
Q Consensus       184 ~~~~~l~i~D~~G----------q~~~r~~w~~y~~~---~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~  250 (358)
                      ..+..+.+|||+|          ++.++..+..|+++   ++++|||+|.++         ...  .....++..+..  
T Consensus        76 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~---------~~~--~~~~~~~~~l~~--  142 (223)
T 4dhe_A           76 AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARR---------PLT--ELDRRMIEWFAP--  142 (223)
T ss_dssp             TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTS---------CCC--HHHHHHHHHHGG--
T ss_pred             CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCC---------CCC--HHHHHHHHHHHh--
Confidence            4567899999999          56678888888887   677999999752         111  112233333322  


Q ss_pred             CCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeec
Q 018283          251 CFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTA  330 (358)
Q Consensus       251 ~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA  330 (358)
                        .+.|+++|+||+|+.....                       ..+..+.+.+.+......  .   ....+.++.+||
T Consensus       143 --~~~p~i~v~nK~Dl~~~~~-----------------------~~~~~~~~~~~l~~~~~~--~---~~~~~~~~~~SA  192 (223)
T 4dhe_A          143 --TGKPIHSLLTKCDKLTRQE-----------------------SINALRATQKSLDAYRDA--G---YAGKLTVQLFSA  192 (223)
T ss_dssp             --GCCCEEEEEECGGGSCHHH-----------------------HHHHHHHHHHHHHHHHHH--T---CCSCEEEEEEBT
T ss_pred             --cCCCEEEEEeccccCChhh-----------------------HHHHHHHHHHHHHhhhhc--c---cCCCCeEEEeec
Confidence              3689999999999865321                       122223333333222100  0   023467889999


Q ss_pred             cChhhHHHHHHHHHHHHHH
Q 018283          331 LDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       331 ~d~~ni~~vf~~i~~~i~~  349 (358)
                      ++++||.++|+++.+.+..
T Consensus       193 ~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          193 LKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             TTTBSHHHHHHHHHHHHC-
T ss_pred             CCCcCHHHHHHHHHHhcCc
Confidence            9999999999999988754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.67  E-value=1.8e-17  Score=147.12  Aligned_cols=76  Identities=21%  Similarity=0.320  Sum_probs=59.9

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcC----CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC---CCCCCcE
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEG----VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP---CFEKTSF  257 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~----~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~---~~~~~~i  257 (358)
                      ....+.+||++|++.++..|..|+++    ++++|||+|.+         .+..++.....++..++...   ...++|+
T Consensus        53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  123 (218)
T 1nrj_B           53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST---------VDPKKLTTTAEFLVDILSITESSCENGIDI  123 (218)
T ss_dssp             GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETT---------SCTTCCHHHHHHHHHHHHHHHHHSTTCCCE
T ss_pred             eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECC---------CChHHHHHHHHHHHHHHhcccccccCCCCE
Confidence            55688999999999999999999988    89999999984         13455666666666665432   2247899


Q ss_pred             EEEeeCCCchhh
Q 018283          258 MLFLNKFDIFEK  269 (358)
Q Consensus       258 ilv~NK~Dl~~e  269 (358)
                      ++++||+|+..+
T Consensus       124 ilv~nK~Dl~~~  135 (218)
T 1nrj_B          124 LIACNKSELFTA  135 (218)
T ss_dssp             EEEEECTTSTTC
T ss_pred             EEEEEchHhccc
Confidence            999999999754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.66  E-value=6.5e-16  Score=142.88  Aligned_cols=107  Identities=13%  Similarity=0.146  Sum_probs=74.6

Q ss_pred             ceEEEEEecCCCchhh------hhHhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcE
Q 018283          186 GEVYRLFDVGGQRNER------RKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF  257 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r------~~w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~i  257 (358)
                      +..+.+|||+|+++++      ..+..|+.  +++++|+|+|.++          .++   ...++..+..    .++|+
T Consensus        48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~----------~e~---~~~~~~~l~~----~~~p~  110 (272)
T 3b1v_A           48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATN----------LER---NLYLTTQLIE----TGIPV  110 (272)
T ss_dssp             CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGG----------HHH---HHHHHHHHHH----TCSCE
T ss_pred             CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCc----------hHh---HHHHHHHHHh----cCCCE
Confidence            6789999999999886      67888887  5999999999842          222   2344444443    26899


Q ss_pred             EEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHH
Q 018283          258 MLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK  337 (358)
Q Consensus       258 ilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~  337 (358)
                      ++++||+|+.+.+...                   .+...    +.+.+               .+.++.|||++++||+
T Consensus       111 ilv~NK~Dl~~~~~~~-------------------~~~~~----l~~~l---------------g~~vi~~SA~~g~gi~  152 (272)
T 3b1v_A          111 TIALNMIDVLDGQGKK-------------------INVDK----LSYHL---------------GVPVVATSALKQTGVD  152 (272)
T ss_dssp             EEEEECHHHHHHTTCC-------------------CCHHH----HHHHH---------------TSCEEECBTTTTBSHH
T ss_pred             EEEEEChhhCCcCCcH-------------------HHHHH----HHHHc---------------CCCEEEEEccCCCCHH
Confidence            9999999997653210                   11111    11111               1446789999999999


Q ss_pred             HHHHHHHHHH
Q 018283          338 KTFKLVDETL  347 (358)
Q Consensus       338 ~vf~~i~~~i  347 (358)
                      ++|+++.+.+
T Consensus       153 el~~~i~~~~  162 (272)
T 3b1v_A          153 QVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHHHHH
Confidence            9999987754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.66  E-value=9e-16  Score=140.87  Aligned_cols=111  Identities=14%  Similarity=0.126  Sum_probs=77.5

Q ss_pred             cccceEEEEEecCCCchhhhhH------hhhh--cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNERRKW------IHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w------~~y~--~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ...+..+.+|||+|+..++..|      ..|+  .+++++|+|+|.++          .++   .+.++..+...    +
T Consensus        48 ~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~----------~~~---~~~~~~~l~~~----~  110 (258)
T 3a1s_A           48 TYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVN----------PEQ---SLYLLLEILEM----E  110 (258)
T ss_dssp             EETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTS----------CHH---HHHHHHHHHTT----T
T ss_pred             EECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCc----------hhh---HHHHHHHHHhc----C
Confidence            4567899999999999887644      6676  58999999999853          222   23455555442    6


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      .|+++++||+|+.+++-..                   .+..+    +.+.+               .+.++.|||++++
T Consensus       111 ~pvilv~NK~Dl~~~~~i~-------------------~~~~~----l~~~l---------------g~~vi~~SA~~g~  152 (258)
T 3a1s_A          111 KKVILAMTAIDEAKKTGMK-------------------IDRYE----LQKHL---------------GIPVVFTSSVTGE  152 (258)
T ss_dssp             CCEEEEEECHHHHHHTTCC-------------------BCHHH----HHHHH---------------CSCEEECCTTTCT
T ss_pred             CCEEEEEECcCCCCccchH-------------------HHHHH----HHHHc---------------CCCEEEEEeeCCc
Confidence            8999999999997653210                   11111    11111               2457889999999


Q ss_pred             hHHHHHHHHHHHHH
Q 018283          335 LVKKTFKLVDETLR  348 (358)
Q Consensus       335 ni~~vf~~i~~~i~  348 (358)
                      ||.++|+.+.+.+.
T Consensus       153 gi~el~~~i~~~~~  166 (258)
T 3a1s_A          153 GLEELKEKIVEYAQ  166 (258)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999988653

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.61  E-value=1.2e-15  Score=132.40  Aligned_cols=76  Identities=21%  Similarity=0.320  Sum_probs=60.0

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcC----CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC---CCCCCcE
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEG----VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP---CFEKTSF  257 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~----~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~---~~~~~~i  257 (358)
                      ..+.+.+|||+|++.++..|..|+.+    ++++|||+|.+         .+..++.+...++..++...   ...++|+
T Consensus        89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  159 (193)
T 2ged_A           89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST---------VDPKKLTTTAEFLVDILSITESSCENGIDI  159 (193)
T ss_dssp             CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETT---------CCHHHHHHHHHHHHHHHHHHHHHSTTCCCE
T ss_pred             cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECC---------CCchhHHHHHHHHHHHHhhhhhccccCCCE
Confidence            45678999999999999999999987    89999999973         24566777777777665432   2247899


Q ss_pred             EEEeeCCCchhh
Q 018283          258 MLFLNKFDIFEK  269 (358)
Q Consensus       258 ilv~NK~Dl~~e  269 (358)
                      ++|+||+|+..+
T Consensus       160 ilv~nK~Dl~~~  171 (193)
T 2ged_A          160 LIACNKSELFTA  171 (193)
T ss_dssp             EEEEECTTSTTC
T ss_pred             EEEEEchHhcCC
Confidence            999999999653

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.61  E-value=4.8e-15  Score=137.18  Aligned_cols=110  Identities=16%  Similarity=0.156  Sum_probs=73.8

Q ss_pred             cccceEEEEEecCCCchhh----------hhHhhhh--cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC
Q 018283          183 KKSGEVYRLFDVGGQRNER----------RKWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP  250 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r----------~~w~~y~--~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~  250 (358)
                      ...+..+.+|||+|+..++          ..+..|+  ++++++|+|+|.++          .++...   +...+... 
T Consensus        46 ~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~----------~~~~~~---~~~~l~~~-  111 (274)
T 3i8s_A           46 STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN----------LERNLY---LTLQLLEL-  111 (274)
T ss_dssp             ECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG----------HHHHHH---HHHHHHHH-
T ss_pred             EeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC----------hHHHHH---HHHHHHhc-
Confidence            4455688999999998876          4456665  79999999999742          233333   33333221 


Q ss_pred             CCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeec
Q 018283          251 CFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTA  330 (358)
Q Consensus       251 ~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA  330 (358)
                         +.|+++++||+|+.+++-..                   ...+.    +.+.+               .+.++.+||
T Consensus       112 ---~~p~ivv~NK~Dl~~~~~~~-------------------~~~~~----l~~~l---------------g~~~i~~SA  150 (274)
T 3i8s_A          112 ---GIPCIVALNMLDIAEKQNIR-------------------IEIDA----LSARL---------------GCPVIPLVS  150 (274)
T ss_dssp             ---TCCEEEEEECHHHHHHTTEE-------------------ECHHH----HHHHH---------------TSCEEECCC
T ss_pred             ---CCCEEEEEECccchhhhhHH-------------------HHHHH----HHHhc---------------CCCEEEEEc
Confidence               68999999999997653211                   11111    11111               145788999


Q ss_pred             cChhhHHHHHHHHHHHH
Q 018283          331 LDPKLVKKTFKLVDETL  347 (358)
Q Consensus       331 ~d~~ni~~vf~~i~~~i  347 (358)
                      ++++||+++|+.+.+.+
T Consensus       151 ~~g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          151 TRGRGIEALKLAIDRYK  167 (274)
T ss_dssp             GGGHHHHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999987654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.61  E-value=7.4e-15  Score=135.47  Aligned_cols=112  Identities=17%  Similarity=0.180  Sum_probs=78.8

Q ss_pred             cccceEEEEEecCCCchhhh------hHhhhh--cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNERR------KWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~------~w~~y~--~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ...+..+.+||++|+..+..      .+..|+  .+++++|+|+|.+.             ......++..+...   ..
T Consensus        46 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~-------------~~~~~~~~~~~~~~---~~  109 (271)
T 3k53_A           46 EYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTC-------------LMRNLFLTLELFEM---EV  109 (271)
T ss_dssp             EETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGG-------------HHHHHHHHHHHHHT---TC
T ss_pred             EECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCc-------------chhhHHHHHHHHhc---CC
Confidence            44567799999999998877      788888  78999999999742             23345555555543   23


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      .|+++++||+|+.+.+-..                   .+..    -+..++               .+.++.|||+++.
T Consensus       110 ~p~ilv~NK~Dl~~~~~~~-------------------~~~~----~l~~~l---------------g~~~~~~Sa~~g~  151 (271)
T 3k53_A          110 KNIILVLNKFDLLKKKGAK-------------------IDIK----KMRKEL---------------GVPVIPTNAKKGE  151 (271)
T ss_dssp             CSEEEEEECHHHHHHHTCC-------------------CCHH----HHHHHH---------------SSCEEECBGGGTB
T ss_pred             CCEEEEEEChhcCcccccH-------------------HHHH----HHHHHc---------------CCcEEEEEeCCCC
Confidence            8999999999997653211                   1111    112221               1346789999999


Q ss_pred             hHHHHHHHHHHHHH
Q 018283          335 LVKKTFKLVDETLR  348 (358)
Q Consensus       335 ni~~vf~~i~~~i~  348 (358)
                      |+.++|+.+.+.+.
T Consensus       152 gi~~l~~~i~~~~~  165 (271)
T 3k53_A          152 GVEELKRMIALMAE  165 (271)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999887764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.61  E-value=3.2e-15  Score=137.03  Aligned_cols=109  Identities=10%  Similarity=0.023  Sum_probs=75.1

Q ss_pred             cccceEEEEEecCCCchhhh----------hHhhhh--cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCC
Q 018283          183 KKSGEVYRLFDVGGQRNERR----------KWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP  250 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~----------~w~~y~--~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~  250 (358)
                      ...+..+.+|||+|+..++.          .+..|+  ++++++|+|+|.+          +   ......+...+..  
T Consensus        44 ~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas----------~---~~~~~~l~~~l~~--  108 (256)
T 3iby_A           44 LLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDAC----------H---LERHLYLTSQLFE--  108 (256)
T ss_dssp             EETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGG----------G---HHHHHHHHHHHTT--
T ss_pred             EECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCC----------C---chhHHHHHHHHHH--
Confidence            44566899999999988875          677888  8999999999974          2   2223334444432  


Q ss_pred             CCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeec
Q 018283          251 CFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTA  330 (358)
Q Consensus       251 ~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA  330 (358)
                        .+.|+++++||+|+.+.+-..                   .....    +.+.+               .+.++.+||
T Consensus       109 --~~~pvilv~NK~Dl~~~~~~~-------------------~~~~~----l~~~l---------------g~~vi~~SA  148 (256)
T 3iby_A          109 --LGKPVVVALNMMDIAEHRGIS-------------------IDTEK----LESLL---------------GCSVIPIQA  148 (256)
T ss_dssp             --SCSCEEEEEECHHHHHHTTCE-------------------ECHHH----HHHHH---------------CSCEEECBG
T ss_pred             --cCCCEEEEEEChhcCCcCCcH-------------------HHHHH----HHHHc---------------CCCEEEEEC
Confidence              268999999999997653110                   11111    22221               245788999


Q ss_pred             cChhhHHHHHHHHHHH
Q 018283          331 LDPKLVKKTFKLVDET  346 (358)
Q Consensus       331 ~d~~ni~~vf~~i~~~  346 (358)
                      ++++|++++|+.+.+.
T Consensus       149 ~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          149 HKNIGIPALQQSLLHC  164 (256)
T ss_dssp             GGTBSHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            9999999999998764

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.58  E-value=1.4e-14  Score=143.82  Aligned_cols=113  Identities=12%  Similarity=0.144  Sum_probs=67.2

Q ss_pred             cccceEEEEEecCCCchhhhhH--------hhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNERRKW--------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w--------~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ...+..+.+|||+|++.++..|        ..++++++++|+|+|.++..       ....+.....++..+      .+
T Consensus       277 ~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~-------s~~~~~~~~~~l~~l------~~  343 (476)
T 3gee_A          277 IHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTER-------LDDELTEIRELKAAH------PA  343 (476)
T ss_dssp             EETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCS-------SGGGHHHHHHHHHHC------TT
T ss_pred             EECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCc-------chhhhHHHHHHHHhc------CC
Confidence            4466889999999998876554        44789999999999986421       222233444444443      26


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      .|+++|+||+|+.....                       ...  +    .+....           ...++.+||++++
T Consensus       344 ~piIvV~NK~Dl~~~~~-----------------------~~~--~----~l~~~~-----------~~~~i~vSAktg~  383 (476)
T 3gee_A          344 AKFLTVANKLDRAANAD-----------------------ALI--R----AIADGT-----------GTEVIGISALNGD  383 (476)
T ss_dssp             SEEEEEEECTTSCTTTH-----------------------HHH--H----HHHHHH-----------TSCEEECBTTTTB
T ss_pred             CCEEEEEECcCCCCccc-----------------------hhH--H----HHHhcC-----------CCceEEEEECCCC
Confidence            89999999999864321                       110  1    111110           0236779999999


Q ss_pred             hHHHHHHHHHHHHH
Q 018283          335 LVKKTFKLVDETLR  348 (358)
Q Consensus       335 ni~~vf~~i~~~i~  348 (358)
                      ||+++|+++.+.+.
T Consensus       384 GI~eL~~~i~~~~~  397 (476)
T 3gee_A          384 GIDTLKQHMGDLVK  397 (476)
T ss_dssp             SHHHHHHHHTHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988775

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.57  E-value=2.5e-14  Score=134.51  Aligned_cols=113  Identities=14%  Similarity=0.157  Sum_probs=76.1

Q ss_pred             ceEEEEEecCCCchh----------hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283          186 GEVYRLFDVGGQRNE----------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT  255 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~----------r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~  255 (358)
                      +..+.+|||+|+...          ...+..+++++|++|||+|.++          .....+...|+..+..    .+.
T Consensus        58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~----------~~~~~~~~~~~~~l~~----~~~  123 (308)
T 3iev_A           58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATE----------GWRPRDEEIYQNFIKP----LNK  123 (308)
T ss_dssp             TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTT----------BSCHHHHHHHHHHTGG----GCC
T ss_pred             CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCC----------CCCchhHHHHHHHHHh----cCC
Confidence            788999999999554          4778889999999999999852          2222232223444332    368


Q ss_pred             cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283          256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL  335 (358)
Q Consensus       256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n  335 (358)
                      |+++|+||+|+...+                      ....+..+.+.+.+.             ....++.+||+++.|
T Consensus       124 pvilV~NK~Dl~~~~----------------------~~~~~~~~~l~~~~~-------------~~~~i~~vSA~~g~g  168 (308)
T 3iev_A          124 PVIVVINKIDKIGPA----------------------KNVLPLIDEIHKKHP-------------ELTEIVPISALKGAN  168 (308)
T ss_dssp             CEEEEEECGGGSSSG----------------------GGGHHHHHHHHHHCT-------------TCCCEEECBTTTTBS
T ss_pred             CEEEEEECccCCCCH----------------------HHHHHHHHHHHHhcc-------------CCCeEEEEeCCCCCC
Confidence            999999999986211                      112222333332221             123467899999999


Q ss_pred             HHHHHHHHHHHH
Q 018283          336 VKKTFKLVDETL  347 (358)
Q Consensus       336 i~~vf~~i~~~i  347 (358)
                      +.++|+.+.+.+
T Consensus       169 v~~L~~~l~~~l  180 (308)
T 3iev_A          169 LDELVKTILKYL  180 (308)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhC
Confidence            999999988765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.56  E-value=5.1e-15  Score=146.61  Aligned_cols=121  Identities=13%  Similarity=0.161  Sum_probs=84.8

Q ss_pred             cccceEEEEEecCC----------CchhhhhHhh-hhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283          183 KKSGEVYRLFDVGG----------QRNERRKWIH-LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  251 (358)
Q Consensus       183 ~~~~~~l~i~D~~G----------q~~~r~~w~~-y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~  251 (358)
                      ...+..+.+|||+|          ++.++..+.. |++.++++|+|+|.++        ...   .....++..+..   
T Consensus       239 ~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~--------~~~---~~~~~~~~~~~~---  304 (456)
T 4dcu_A          239 TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE--------GII---EQDKRIAGYAHE---  304 (456)
T ss_dssp             EETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT--------CCC---HHHHHHHHHHHH---
T ss_pred             EECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCC--------CcC---HHHHHHHHHHHH---
Confidence            34556899999999          8888888765 7899999999999752        111   122333333333   


Q ss_pred             CCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeecc
Q 018283          252 FEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL  331 (358)
Q Consensus       252 ~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~  331 (358)
                       .+.|++||+||+|+.+++.                     ...+++.+++.+.+...           ..+.++++||+
T Consensus       305 -~~~~~ilv~NK~Dl~~~~~---------------------~~~~~~~~~~~~~~~~~-----------~~~~~~~~SA~  351 (456)
T 4dcu_A          305 -AGKAVVIVVNKWDAVDKDE---------------------STMKEFEENIRDHFQFL-----------DYAPILFMSAL  351 (456)
T ss_dssp             -TTCEEEEEEECGGGSCCCS---------------------SHHHHHHHHHHHHCGGG-----------TTSCEEECCTT
T ss_pred             -cCCCEEEEEEChhcCCCch---------------------HHHHHHHHHHHHhcccC-----------CCCCEEEEcCC
Confidence             3689999999999864311                     33455666665554322           12457889999


Q ss_pred             ChhhHHHHHHHHHHHHHHh
Q 018283          332 DPKLVKKTFKLVDETLRRR  350 (358)
Q Consensus       332 d~~ni~~vf~~i~~~i~~~  350 (358)
                      +++||.++|+.+.+.+.+.
T Consensus       352 ~g~gv~~l~~~i~~~~~~~  370 (456)
T 4dcu_A          352 TKKRIHTLMPAIIKASENH  370 (456)
T ss_dssp             TCTTGGGHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHh
Confidence            9999999999999877543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.53  E-value=1.5e-14  Score=142.56  Aligned_cols=120  Identities=13%  Similarity=0.160  Sum_probs=81.8

Q ss_pred             cccceEEEEEecCCC----------chhhhhHh-hhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283          183 KKSGEVYRLFDVGGQ----------RNERRKWI-HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  251 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq----------~~~r~~w~-~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~  251 (358)
                      ...+..+.+|||+|+          +.++..+. .+++.++++|+|+|.++          .... ....++..+..   
T Consensus       219 ~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~----------~~s~-~~~~~~~~~~~---  284 (436)
T 2hjg_A          219 TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE----------GIIE-QDKRIAGYAHE---  284 (436)
T ss_dssp             EETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT----------CCCH-HHHHHHHHHHH---
T ss_pred             EECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCc----------CCcH-HHHHHHHHHHH---
Confidence            334567999999998          66666655 48899999999999853          1122 22345554433   


Q ss_pred             CCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeecc
Q 018283          252 FEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL  331 (358)
Q Consensus       252 ~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~  331 (358)
                       .++|+++++||+|+.+++.                     ...++..+.+...+...           ..+.++++||+
T Consensus       285 -~~~~iiiv~NK~Dl~~~~~---------------------~~~~~~~~~~~~~l~~~-----------~~~~~~~~SA~  331 (436)
T 2hjg_A          285 -AGKAVVIVVNKWDAVDKDE---------------------STMKEFEENIRDHFQFL-----------DYAPILFMSAL  331 (436)
T ss_dssp             -TTCEEEEEEECGGGSCCCT---------------------THHHHHHHHHHHHCGGG-----------TTSCEEECCTT
T ss_pred             -cCCcEEEEEECccCCCcch---------------------HHHHHHHHHHHHhcccC-----------CCCCEEEEecc
Confidence             3689999999999864311                     12334444444444321           12457889999


Q ss_pred             ChhhHHHHHHHHHHHHHH
Q 018283          332 DPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       332 d~~ni~~vf~~i~~~i~~  349 (358)
                      +++||.++|+.+.+.+.+
T Consensus       332 tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          332 TKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             TCTTGGGHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHH
Confidence            999999999999888764

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.53  E-value=6e-14  Score=139.47  Aligned_cols=110  Identities=16%  Similarity=0.259  Sum_probs=74.0

Q ss_pred             cccceEEEEEecCCCc-hhh--------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283          183 KKSGEVYRLFDVGGQR-NER--------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE  253 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~-~~r--------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~  253 (358)
                      ...+..+.+|||+|++ .+.        ..+..|+++++++|+|+|.++-          ....+ .++++.+      .
T Consensus       287 ~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~----------~s~~~-~~il~~l------~  349 (482)
T 1xzp_A          287 VIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSP----------LDEED-RKILERI------K  349 (482)
T ss_dssp             EETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSC----------CCHHH-HHHHHHH------T
T ss_pred             ecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCC----------CCHHH-HHHHHHh------c
Confidence            4456789999999998 543        3456789999999999998531          12211 2333332      2


Q ss_pred             CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283          254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP  333 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~  333 (358)
                      +.|+++|+||+|+..+                       ...++..++     .            ...+.++.+||+++
T Consensus       350 ~~piivV~NK~DL~~~-----------------------~~~~~~~~~-----~------------~~~~~~i~iSAktg  389 (482)
T 1xzp_A          350 NKRYLVVINKVDVVEK-----------------------INEEEIKNK-----L------------GTDRHMVKISALKG  389 (482)
T ss_dssp             TSSEEEEEEECSSCCC-----------------------CCHHHHHHH-----H------------TCSTTEEEEEGGGT
T ss_pred             CCCEEEEEECcccccc-----------------------cCHHHHHHH-----h------------cCCCcEEEEECCCC
Confidence            6799999999998532                       111222221     0            01123678999999


Q ss_pred             hhHHHHHHHHHHHHHH
Q 018283          334 KLVKKTFKLVDETLRR  349 (358)
Q Consensus       334 ~ni~~vf~~i~~~i~~  349 (358)
                      +||+++|+++.+.+..
T Consensus       390 ~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          390 EGLEKLEESIYRETQE  405 (482)
T ss_dssp             CCHHHHHHHHHHHTHH
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999997663

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.53  E-value=2.2e-13  Score=136.95  Aligned_cols=80  Identities=18%  Similarity=0.210  Sum_probs=60.6

Q ss_pred             cCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHH
Q 018283          168 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL  247 (358)
Q Consensus       168 T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~  247 (358)
                      |.......+      ...+..+.+|||+|+..|+..+..+++.++++|+|+|.++           ........+|..+.
T Consensus        69 Ti~~~~~~~------~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~-----------g~~~~t~~~~~~~~  131 (528)
T 3tr5_A           69 SVTTSVMQF------PYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAK-----------GVEPRTIKLMEVCR  131 (528)
T ss_dssp             SSSSSEEEE------EETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTT-----------CSCHHHHHHHHHHH
T ss_pred             eEEEeEEEE------EeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCC-----------CCCHHHHHHHHHHH
Confidence            444444555      6678899999999999999999999999999999999752           11123344555543


Q ss_pred             cCCCCCCCcEEEEeeCCCchh
Q 018283          248 KQPCFEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       248 ~~~~~~~~~iilv~NK~Dl~~  268 (358)
                      .    .++|+++|+||+|+..
T Consensus       132 ~----~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A          132 L----RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             T----TTCCEEEEEECTTSCC
T ss_pred             H----cCCCEEEEEeCCCCcc
Confidence            3    2689999999999864

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.52  E-value=1.1e-13  Score=129.78  Aligned_cols=113  Identities=17%  Similarity=0.138  Sum_probs=72.5

Q ss_pred             cccceEEEEEecCCCch--------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRN--------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~--------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ...+..+.+|||+|+..        +...+..+++++|++|||+|.++-         ....   ..++...+... ..+
T Consensus        51 ~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~---------~~~~---~~~i~~~l~~~-~~~  117 (301)
T 1wf3_A           51 TEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHP---------PTPE---DELVARALKPL-VGK  117 (301)
T ss_dssp             EETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSC---------CCHH---HHHHHHHHGGG-TTT
T ss_pred             EeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCC---------CChH---HHHHHHHHHhh-cCC
Confidence            34568899999999976        566778899999999999998531         1111   12222222221 246


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      +|+++|+||+|+..+.-                         +..+++.. +   .          ....++.+||+++.
T Consensus       118 ~p~ilV~NK~Dl~~~~~-------------------------~~~~~~~~-~---~----------~~~~~~~iSA~~g~  158 (301)
T 1wf3_A          118 VPILLVGNKLDAAKYPE-------------------------EAMKAYHE-L---L----------PEAEPRMLSALDER  158 (301)
T ss_dssp             SCEEEEEECGGGCSSHH-------------------------HHHHHHHH-T---S----------TTSEEEECCTTCHH
T ss_pred             CCEEEEEECcccCCchH-------------------------HHHHHHHH-h---c----------CcCcEEEEeCCCCC
Confidence            89999999999853210                         01111111 1   0          01246778999999


Q ss_pred             hHHHHHHHHHHHH
Q 018283          335 LVKKTFKLVDETL  347 (358)
Q Consensus       335 ni~~vf~~i~~~i  347 (358)
                      |++++|+.+.+.+
T Consensus       159 gv~~l~~~l~~~l  171 (301)
T 1wf3_A          159 QVAELKADLLALM  171 (301)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHhc
Confidence            9999999887643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.52  E-value=2e-14  Score=141.57  Aligned_cols=110  Identities=19%  Similarity=0.208  Sum_probs=68.5

Q ss_pred             cccceEEEEEecCCCc--------hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQR--------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~--------~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ...+..+.+|||||++        .++..|..+++++|++|||+|.++         . ...  ...++..++..   .+
T Consensus        47 ~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~---------~-~~~--~d~~~~~~l~~---~~  111 (436)
T 2hjg_A           47 EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGRE---------G-VTA--ADEEVAKILYR---TK  111 (436)
T ss_dssp             TTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTT---------C-SCH--HHHHHHHHHTT---CC
T ss_pred             EECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCC---------C-CCH--HHHHHHHHHHH---cC
Confidence            4456789999999996        788999999999999999999742         1 111  11233344432   36


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      +|++|++||+|+......   .  .    ++                     ..+     +   -   -.++.+||+++.
T Consensus       112 ~pvilv~NK~D~~~~~~~---~--~----~~---------------------~~l-----g---~---~~~~~iSA~~g~  150 (436)
T 2hjg_A          112 KPVVLAVNKLDNTEMRAN---I--Y----DF---------------------YSL-----G---F---GEPYPISGTHGL  150 (436)
T ss_dssp             SCEEEEEECCCC-----C---C--C----SS---------------------GGG-----S---S---CCCEECBTTTTB
T ss_pred             CCEEEEEECccCccchhh---H--H----HH---------------------HHc-----C---C---CCeEEEeCcCCC
Confidence            899999999998654210   0  0    00                     000     0   0   024679999999


Q ss_pred             hHHHHHHHHHHHHH
Q 018283          335 LVKKTFKLVDETLR  348 (358)
Q Consensus       335 ni~~vf~~i~~~i~  348 (358)
                      |+.++|+++.+.+.
T Consensus       151 gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          151 GLGDLLDAVAEHFK  164 (436)
T ss_dssp             THHHHHHHHHHTGG
T ss_pred             ChHHHHHHHHHhcC
Confidence            99999999887664

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.52  E-value=4.6e-14  Score=139.07  Aligned_cols=109  Identities=14%  Similarity=0.156  Sum_probs=73.3

Q ss_pred             ccceEEEEEecCCCch---------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHH-HHHHHHHHHcCCCCC
Q 018283          184 KSGEVYRLFDVGGQRN---------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME-TKELFDWVLKQPCFE  253 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~---------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~-~~~~~~~i~~~~~~~  253 (358)
                      ..+..+.+|||||++.         ++..|..|++++|++|||+|.++         ......+ ...++..       .
T Consensus        46 ~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~---------~~~~~d~~i~~~l~~-------~  109 (439)
T 1mky_A           46 WYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKR---------GITKEDESLADFLRK-------S  109 (439)
T ss_dssp             ETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTT---------CCCHHHHHHHHHHHH-------H
T ss_pred             ECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCC---------CCCHHHHHHHHHHHH-------c
Confidence            3456789999999764         57789999999999999999742         1111111 1222222       2


Q ss_pred             CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHH-HHHHHHHHHHHhhhcCCCCCCCceE-EEEEeecc
Q 018283          254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA-YEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTAL  331 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~-~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~tSA~  331 (358)
                      ++|++|++||+|+.+...                        .++ .+     |..+            .+ .++.+||+
T Consensus       110 ~~p~ilv~NK~D~~~~~~------------------------~~~~~~-----~~~l------------g~~~~~~iSA~  148 (439)
T 1mky_A          110 TVDTILVANKAENLREFE------------------------REVKPE-----LYSL------------GFGEPIPVSAE  148 (439)
T ss_dssp             TCCEEEEEESCCSHHHHH------------------------HHTHHH-----HGGG------------SSCSCEECBTT
T ss_pred             CCCEEEEEeCCCCccccH------------------------HHHHHH-----HHhc------------CCCCEEEEecc
Confidence            579999999999864210                        011 11     1111            01 24679999


Q ss_pred             ChhhHHHHHHHHHHHHHH
Q 018283          332 DPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       332 d~~ni~~vf~~i~~~i~~  349 (358)
                      +|.|+.++|+.+.+.+..
T Consensus       149 ~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          149 HNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhccc
Confidence            999999999999988764

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.52  E-value=7.3e-14  Score=139.29  Aligned_cols=132  Identities=15%  Similarity=0.119  Sum_probs=81.7

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      ..|..+....+      +..+..+.+|||+|++.|.+.+..+++++|++|+|+|.++-..   + ...+......+.+..
T Consensus        96 GiTi~~~~~~~------~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~---~-~~~~~~~qt~e~~~~  165 (483)
T 3p26_A           96 GVTVSICTSHF------STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAF---E-SGFDLDGQTKEHMLL  165 (483)
T ss_dssp             CSSCCCCEEEE------ECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC----------CCCCHHHHHHHHH
T ss_pred             CcceEeeeEEE------ecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCcc---c-cccchhhhHHHHHHH
Confidence            34555555666      6678899999999999999999999999999999999853100   0 000001111222211


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +..   ....|+++++||+|+.+...                     ...++..+.+...+..+-    .   ....+.+
T Consensus       166 ~~~---~~~~~iIvviNK~Dl~~~~~---------------------~~~~~i~~~~~~~l~~~g----~---~~~~~~~  214 (483)
T 3p26_A          166 ASS---LGIHNLIIAMNKMDNVDWSQ---------------------QRFEEIKSKLLPYLVDIG----F---FEDNINW  214 (483)
T ss_dssp             HHH---TTCCCEEEEEECGGGGTTCH---------------------HHHHHHHHHHHHHHHHHT----C---CGGGEEE
T ss_pred             HHH---cCCCcEEEEEECcCcccchH---------------------HHHHHHHHHHHHHHHHcC----C---CcccceE
Confidence            111   12357999999999864210                     223444455444444331    0   1224778


Q ss_pred             EEeeccChhhHHH
Q 018283          326 YRTTALDPKLVKK  338 (358)
Q Consensus       326 ~~tSA~d~~ni~~  338 (358)
                      +.+||++++||.+
T Consensus       215 i~iSA~~g~gi~e  227 (483)
T 3p26_A          215 VPISGFSGEGVYK  227 (483)
T ss_dssp             EECCSSSCTTSSS
T ss_pred             EEEeeecCCCccc
Confidence            8999999999975

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.52  E-value=1.1e-13  Score=134.81  Aligned_cols=117  Identities=15%  Similarity=0.117  Sum_probs=78.5

Q ss_pred             ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283          186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD  265 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D  265 (358)
                      ...+.+|||+|++.+.+.+..++..+|++|+|+|.++-       .......+.+..+..+      ...|+++++||+|
T Consensus        74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~-------~~~~qt~~~~~~~~~~------~~~~iivviNK~D  140 (403)
T 3sjy_A           74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP-------FPQPQTREHFVALGII------GVKNLIIVQNKVD  140 (403)
T ss_dssp             EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSC-------SSCHHHHHHHHHHHHH------TCCCEEEEEECGG
T ss_pred             cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC-------CCcHHHHHHHHHHHHc------CCCCEEEEEECcc
Confidence            37899999999999999999999999999999997521       1122233333333222      1258999999999


Q ss_pred             chhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283          266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~  345 (358)
                      +....                       ...+..+.+.+.+...         ....+.++.+||++++||.++|+.+.+
T Consensus       141 l~~~~-----------------------~~~~~~~~i~~~l~~~---------~~~~~~ii~vSA~~g~gi~~L~~~l~~  188 (403)
T 3sjy_A          141 VVSKE-----------------------EALSQYRQIKQFTKGT---------WAENVPIIPVSALHKINIDSLIEGIEE  188 (403)
T ss_dssp             GSCHH-----------------------HHHHHHHHHHHHHTTS---------TTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             ccchH-----------------------HHHHHHHHHHHHHHhh---------CCCCCEEEEEECCCCcChHHHHHHHHH
Confidence            86431                       1122222222222111         012356888999999999999999987


Q ss_pred             HH
Q 018283          346 TL  347 (358)
Q Consensus       346 ~i  347 (358)
                      .+
T Consensus       189 ~l  190 (403)
T 3sjy_A          189 YI  190 (403)
T ss_dssp             HS
T ss_pred             hC
Confidence            65

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.51  E-value=5e-13  Score=128.17  Aligned_cols=118  Identities=21%  Similarity=0.235  Sum_probs=77.9

Q ss_pred             cccceEEEEEecCCCchhh---------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNER---------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE  253 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r---------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~  253 (358)
                      ...+..+.+|||+|+....         .....+...++++|+|+|++..        ..-.+.+...++..+....  .
T Consensus       210 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~--------~~~~~~~~~~~~~~i~~~~--~  279 (357)
T 2e87_A          210 EDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEH--------CGFPLEEQIHLFEEVHGEF--K  279 (357)
T ss_dssp             EETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCT--------TSSCHHHHHHHHHHHHHHT--T
T ss_pred             EecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCcc--------ccCCHHHHHHHHHHHHHhc--C
Confidence            3346789999999985431         2233455679999999998521        1113455556666654421  2


Q ss_pred             CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283          254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP  333 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~  333 (358)
                      +.|+++|+||+|+....                       +++++.+++.    .            ..+.++++||+++
T Consensus       280 ~~piilV~NK~Dl~~~~-----------------------~~~~~~~~~~----~------------~~~~~~~iSA~~g  320 (357)
T 2e87_A          280 DLPFLVVINKIDVADEE-----------------------NIKRLEKFVK----E------------KGLNPIKISALKG  320 (357)
T ss_dssp             TSCEEEEECCTTTCCHH-----------------------HHHHHHHHHH----H------------TTCCCEECBTTTT
T ss_pred             CCCEEEEEECcccCChH-----------------------HHHHHHHHHH----h------------cCCCeEEEeCCCC
Confidence            68999999999985431                       1233333322    1            1134678999999


Q ss_pred             hhHHHHHHHHHHHHHH
Q 018283          334 KLVKKTFKLVDETLRR  349 (358)
Q Consensus       334 ~ni~~vf~~i~~~i~~  349 (358)
                      +||+++|+++.+.+..
T Consensus       321 ~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          321 TGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             BTHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            9999999999988854

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.50  E-value=8.8e-15  Score=128.39  Aligned_cols=112  Identities=10%  Similarity=0.029  Sum_probs=72.1

Q ss_pred             ecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHH---HHHHcCCC-CCCCcEEEEeeCC-Cch
Q 018283          193 DVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF---DWVLKQPC-FEKTSFMLFLNKF-DIF  267 (358)
Q Consensus       193 D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~---~~i~~~~~-~~~~~iilv~NK~-Dl~  267 (358)
                      |+|||+++|+.|.+||++++++|||||.+          +..+++ +.+.+   ..+++... +.++|++|++||+ |+.
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSs----------D~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp  176 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAE----------AHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV  176 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECB----------TTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEeccc----------cHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence            57899999999999999999999999975          334443 55555   44555543 5789999999995 774


Q ss_pred             hhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHH
Q 018283          268 EKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       268 ~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                      .+                       -...+..+.     ..+..       -+|.+++.-|||++|+|+.+.++|+.+.+
T Consensus       177 ~A-----------------------ms~~EI~e~-----L~L~~-------l~R~W~Iq~csA~TGeGL~EGLdWL~~~l  221 (227)
T 3l82_B          177 KR-----------------------MPCFYLAHE-----LHLNL-------LNHPWLVQDTEAETLTGFLNGIEWILEEV  221 (227)
T ss_dssp             CB-----------------------CCHHHHHHH-----TTGGG-------GCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred             CC-----------------------CCHHHHHHH-----cCCcC-------CCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence            32                       111222211     11110       13679999999999999999999999877


Q ss_pred             HHh
Q 018283          348 RRR  350 (358)
Q Consensus       348 ~~~  350 (358)
                      .++
T Consensus       222 ~~k  224 (227)
T 3l82_B          222 ESK  224 (227)
T ss_dssp             TTC
T ss_pred             Hhh
Confidence            543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.48  E-value=2.1e-12  Score=124.07  Aligned_cols=123  Identities=11%  Similarity=0.093  Sum_probs=73.7

Q ss_pred             cceEEEEEecCCC---------chhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283          185 SGEVYRLFDVGGQ---------RNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT  255 (358)
Q Consensus       185 ~~~~l~i~D~~Gq---------~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~  255 (358)
                      .+..+.+|||+|.         +.++..+. ++..++.+++|+|.++.+.     .....+..+.+++..+    ...+.
T Consensus       224 ~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~-----~~~~~~~~~~~~L~~l----~~~~~  293 (364)
T 2qtf_A          224 NNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSEN-----LLIETLQSSFEILREI----GVSGK  293 (364)
T ss_dssp             TTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHH-----HHHHHHHHHHHHHHHH----TCCSC
T ss_pred             CCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcc-----hHHHHHHHHHHHHHHh----CcCCC
Confidence            3467899999997         33555544 5789999999999863110     0112222233334333    23468


Q ss_pred             cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283          256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL  335 (358)
Q Consensus       256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n  335 (358)
                      |+++|+||+|+......                    .....+.++ ...+            ......++.+||++++|
T Consensus       294 p~ilV~NK~Dl~~~~~~--------------------~~~~~~~~l-~~~l------------~~~~~~~~~~SA~~g~g  340 (364)
T 2qtf_A          294 PILVTLNKIDKINGDLY--------------------KKLDLVEKL-SKEL------------YSPIFDVIPISALKRTN  340 (364)
T ss_dssp             CEEEEEECGGGCCSCHH--------------------HHHHHHHHH-HHHH------------CSCEEEEEECBTTTTBS
T ss_pred             CEEEEEECCCCCCchHH--------------------HHHHHHHHH-HHHh------------cCCCCcEEEEECCCCcC
Confidence            99999999998532100                    001111111 1111            01124567899999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 018283          336 VKKTFKLVDETLRRR  350 (358)
Q Consensus       336 i~~vf~~i~~~i~~~  350 (358)
                      ++++|+.+.+.+...
T Consensus       341 i~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          341 LELLRDKIYQLATQL  355 (364)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999998877543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.48  E-value=6.8e-13  Score=130.71  Aligned_cols=136  Identities=12%  Similarity=0.086  Sum_probs=78.7

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  246 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i  246 (358)
                      .|..+....|      ...+..+.+|||+||+.|.+.+..+++.+|++|+|+|.++-..   + ...+....+.+.+..+
T Consensus        81 iTid~~~~~~------~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~---e-~~~~~~~qt~e~l~~~  150 (439)
T 3j2k_7           81 KTVEVGRAYF------ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF---E-TGFEKGGQTREHAMLA  150 (439)
T ss_pred             ceEEEeEEEE------ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCcc---c-cccCCCchHHHHHHHH
Confidence            3444444555      5567799999999999999999999999999999999752100   0 0000001222222222


Q ss_pred             HcCCCCCCCc-EEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          247 LKQPCFEKTS-FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       247 ~~~~~~~~~~-iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      ..    .++| +++++||+|+......                   ....++..+.+...+..+.    -+  ....+.+
T Consensus       151 ~~----~~v~~iIvviNK~Dl~~~~~~-------------------~~~~~~i~~~~~~~l~~~g----~~--~~~~~~~  201 (439)
T 3j2k_7          151 KT----AGVKHLIVLINKMDDPTVNWS-------------------NERYEECKEKLVPFLKKVG----FN--PKKDIHF  201 (439)
T ss_pred             HH----cCCCeEEEEeecCCCcccchH-------------------HHHHHHHHHHHHHHHHHhc----cc--ccCCeeE
Confidence            11    1455 9999999998532100                   0111222222222222111    00  0124678


Q ss_pred             EEeeccChhhHHHHHH
Q 018283          326 YRTTALDPKLVKKTFK  341 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~  341 (358)
                      +.+||++|.||.++++
T Consensus       202 i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          202 MPCSGLTGANLKEQSD  217 (439)
T ss_pred             EEeeccCCcccccccc
Confidence            8899999999999655

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.48  E-value=3.7e-13  Score=130.94  Aligned_cols=80  Identities=16%  Similarity=0.216  Sum_probs=57.3

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  246 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i  246 (358)
                      .|.++....+      ......+.+|||+|++.|.+.+..+++.+|++|+|+|.++-           .+..+.+.+..+
T Consensus        52 iTi~~~~~~~------~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~e~l~~~  114 (397)
T 1d2e_A           52 ITINAAHVEY------STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG-----------PMPQTREHLLLA  114 (397)
T ss_dssp             EEEECEEEEE------ECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTC-----------SCHHHHHHHHHH
T ss_pred             cEEEeeeEEe------ccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC-----------CCHHHHHHHHHH
Confidence            3444444555      55678999999999999999999999999999999997521           112233333332


Q ss_pred             HcCCCCCCCc-EEEEeeCCCch
Q 018283          247 LKQPCFEKTS-FMLFLNKFDIF  267 (358)
Q Consensus       247 ~~~~~~~~~~-iilv~NK~Dl~  267 (358)
                      ..    .++| +++++||+|+.
T Consensus       115 ~~----~~vp~iivviNK~Dl~  132 (397)
T 1d2e_A          115 RQ----IGVEHVVVYVNKADAV  132 (397)
T ss_dssp             HH----TTCCCEEEEEECGGGC
T ss_pred             HH----cCCCeEEEEEECcccC
Confidence            22    2567 78999999986

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.47  E-value=4.9e-13  Score=130.38  Aligned_cols=79  Identities=16%  Similarity=0.273  Sum_probs=57.7

Q ss_pred             cCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHH
Q 018283          168 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL  247 (358)
Q Consensus       168 T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~  247 (358)
                      |.......+      ......+.+|||+|++.|.+.+..+++.+|++|+|+|.++-           .+....+++..+.
T Consensus        62 Ti~~~~~~~------~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~~~l~~~~  124 (405)
T 2c78_A           62 TINTAHVEY------ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG-----------PMPQTREHILLAR  124 (405)
T ss_dssp             CCSCEEEEE------ECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTC-----------CCHHHHHHHHHHH
T ss_pred             CEEeeeeEe------ccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCC-----------CcHHHHHHHHHHH
Confidence            344444555      55678899999999999999999999999999999997521           1223344444332


Q ss_pred             cCCCCCCCc-EEEEeeCCCch
Q 018283          248 KQPCFEKTS-FMLFLNKFDIF  267 (358)
Q Consensus       248 ~~~~~~~~~-iilv~NK~Dl~  267 (358)
                      .    .++| +++++||+|+.
T Consensus       125 ~----~~ip~iivviNK~Dl~  141 (405)
T 2c78_A          125 Q----VGVPYIVVFMNKVDMV  141 (405)
T ss_dssp             H----TTCCCEEEEEECGGGC
T ss_pred             H----cCCCEEEEEEECcccc
Confidence            2    2567 89999999986

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.47  E-value=1.3e-13  Score=127.46  Aligned_cols=114  Identities=16%  Similarity=0.168  Sum_probs=60.0

Q ss_pred             cccceEEEEEecCCC-------chhhhhH-------hhhhcC-------------CcEEEEEEEccccccccccccccch
Q 018283          183 KKSGEVYRLFDVGGQ-------RNERRKW-------IHLFEG-------------VSAVIFCAAISEYDQTLFEDEQKNR  235 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq-------~~~r~~w-------~~y~~~-------------~~~iIfv~dls~~d~~~~~~~~~~~  235 (358)
                      ++..+.+.+|||+|+       +.++.++       ..|+..             +|+++|+++-+          ....
T Consensus        61 ~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~----------~~~~  130 (274)
T 3t5d_A           61 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS----------GHGL  130 (274)
T ss_dssp             --CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSC----------CSSC
T ss_pred             CCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCC----------CCCC
Confidence            345579999999998       4456665       666654             78999999743          1111


Q ss_pred             HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCC
Q 018283          236 MMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTA  315 (358)
Q Consensus       236 l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~  315 (358)
                      ......+++.+..     ++|+++|+||+|+....                       ......+.+.+.+..       
T Consensus       131 ~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~-----------------------e~~~~~~~i~~~l~~-------  175 (274)
T 3t5d_A          131 KPLDIEFMKRLHE-----KVNIIPLIAKADTLTPE-----------------------ECQQFKKQIMKEIQE-------  175 (274)
T ss_dssp             CHHHHHHHHHHTT-----TSCEEEEESSGGGSCHH-----------------------HHHHHHHHHHHHHHH-------
T ss_pred             CHHHHHHHHHHhc-----cCCEEEEEeccCCCCHH-----------------------HHHHHHHHHHHHHHH-------
Confidence            1222444555422     68999999999985321                       122222223333322       


Q ss_pred             CCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283          316 PDRVDRVFKIYRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       316 ~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~  346 (358)
                           ..+.++.+||++++++.++++++.+.
T Consensus       176 -----~~i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          176 -----HKIKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             -----TTCCCCCC-----------CHHHHHT
T ss_pred             -----cCCeEEcCCCCCChhHHHHHHHHhcC
Confidence                 12445668999999999999888764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.47  E-value=3.2e-13  Score=121.93  Aligned_cols=76  Identities=12%  Similarity=0.169  Sum_probs=51.2

Q ss_pred             cccceEEEEEecCC-----------CchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283          183 KKSGEVYRLFDVGG-----------QRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  251 (358)
Q Consensus       183 ~~~~~~l~i~D~~G-----------q~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~  251 (358)
                      ...+..+.+|||+|           ++.+++.+..++++++++|+|+|++.++.         ....++.++...+... 
T Consensus        74 ~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---------~~~~~l~~~~~~~~~~-  143 (239)
T 3lxx_A           74 SWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE---------EEHKATEKILKMFGER-  143 (239)
T ss_dssp             EETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS---------HHHHHHHHHHHHHHHH-
T ss_pred             EeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH---------HHHHHHHHHHHHhhhh-
Confidence            44567899999999           55677788888899999999999864321         1123333333332211 


Q ss_pred             CCCCcEEEEeeCCCchhh
Q 018283          252 FEKTSFMLFLNKFDIFEK  269 (358)
Q Consensus       252 ~~~~~iilv~NK~Dl~~e  269 (358)
                       ...|++||+||+|+...
T Consensus       144 -~~~~~iiv~nK~D~~~~  160 (239)
T 3lxx_A          144 -ARSFMILIFTRKDDLGD  160 (239)
T ss_dssp             -HGGGEEEEEECGGGC--
T ss_pred             -ccceEEEEEeCCccCCc
Confidence             13599999999998654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.47  E-value=2.6e-13  Score=135.22  Aligned_cols=120  Identities=17%  Similarity=0.113  Sum_probs=78.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ...+..+.+|||+|++.+.+.+..++..+|++|+|+|.++        .......+.+.++..       .++|+++++|
T Consensus        69 ~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~--------g~~~qt~e~l~~~~~-------~~ip~IvviN  133 (482)
T 1wb1_A           69 KLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKE--------GPKTQTGEHMLILDH-------FNIPIIVVIT  133 (482)
T ss_dssp             EETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTT--------CSCHHHHHHHHHHHH-------TTCCBCEEEE
T ss_pred             EECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCC--------CccHHHHHHHHHHHH-------cCCCEEEEEE
Confidence            3456789999999999999999999999999999999742        111112222222221       2578899999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..+.                       ..++..+.+.+.+...    ..    -..+.++.+||++++||.++++.
T Consensus       134 K~Dl~~~~-----------------------~~~~~~~~l~~~l~~~----~~----~~~~~ii~vSA~~g~gI~~L~~~  182 (482)
T 1wb1_A          134 KSDNAGTE-----------------------EIKRTEMIMKSILQST----HN----LKNSSIIPISAKTGFGVDELKNL  182 (482)
T ss_dssp             CTTSSCHH-----------------------HHHHHHHHHHHHHHHS----SS----GGGCCEEECCTTTCTTHHHHHHH
T ss_pred             CCCcccch-----------------------hHHHHHHHHHHHHhhh----cc----cccceEEEEECcCCCCHHHHHHH
Confidence            99996421                       1111122222222111    00    01245788999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +.+.+-
T Consensus       183 L~~~i~  188 (482)
T 1wb1_A          183 IITTLN  188 (482)
T ss_dssp             HHHHHH
T ss_pred             HHHhhc
Confidence            988763

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.46  E-value=2.4e-14  Score=140.02  Aligned_cols=105  Identities=20%  Similarity=0.190  Sum_probs=72.6

Q ss_pred             EEEEEecCCCchhhhh-------HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEE
Q 018283          188 VYRLFDVGGQRNERRK-------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLF  260 (358)
Q Consensus       188 ~l~i~D~~Gq~~~r~~-------w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv  260 (358)
                      .+.+|||+|+..+...       +..++++++++|+|+|.+          .......++.++..   .    +.|+++|
T Consensus        84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~----------~~~~~~~~l~~l~~---~----~~piIvV  146 (423)
T 3qq5_A           84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSA----------PTPYEDDVVNLFKE---M----EIPFVVV  146 (423)
T ss_dssp             EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSS----------CCHHHHHHHHHHHH---T----TCCEEEE
T ss_pred             eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCC----------ChHHHHHHHHHHHh---c----CCCEEEE
Confidence            8999999999877554       667999999999999962          22223333333333   2    6899999


Q ss_pred             eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283          261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF  340 (358)
Q Consensus       261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf  340 (358)
                      +||+|+..+..                     .  +.+..+     .           ....+.++++||++++|++++|
T Consensus       147 ~NK~Dl~~~~~---------------------~--~~~~~l-----~-----------~~~g~~v~~vSAktg~gI~eL~  187 (423)
T 3qq5_A          147 VNKIDVLGEKA---------------------E--ELKGLY-----E-----------SRYEAKVLLVSALQKKGFDDIG  187 (423)
T ss_dssp             CCCCTTTTCCC---------------------T--HHHHHS-----S-----------CCTTCCCCCCSSCCTTSTTTHH
T ss_pred             EeCcCCCCccH---------------------H--HHHHHH-----H-----------HHcCCCEEEEECCCCCCHHHHH
Confidence            99999865421                     1  111111     0           0122456789999999999999


Q ss_pred             HHHHHHHH
Q 018283          341 KLVDETLR  348 (358)
Q Consensus       341 ~~i~~~i~  348 (358)
                      +.+.+.+.
T Consensus       188 ~~L~~~l~  195 (423)
T 3qq5_A          188 KTISEILP  195 (423)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHhhh
Confidence            99998773

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.46  E-value=2.3e-13  Score=132.88  Aligned_cols=116  Identities=16%  Similarity=0.169  Sum_probs=70.2

Q ss_pred             eEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 018283          187 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI  266 (358)
Q Consensus       187 ~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl  266 (358)
                      ..+.+|||+||+.|.+.+......+|++|+|+|.++-       .......+.+..+..      +...|+++++||+|+
T Consensus        81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g-------~~~~qt~e~l~~~~~------l~~~~iivv~NK~Dl  147 (408)
T 1s0u_A           81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEP-------CPQPQTKEHLMALEI------LGIDKIIIVQNKIDL  147 (408)
T ss_dssp             EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSC-------SSCHHHHHHHHHHHH------TTCCCEEEEEECTTS
T ss_pred             cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCC-------CCCchhHHHHHHHHH------cCCCeEEEEEEccCC
Confidence            6899999999999998888888899999999998521       001222233333321      123589999999999


Q ss_pred             hhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283          267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       267 ~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~  346 (358)
                      ..+...                   ....++..+++..    .         ....+.++.+||++++||.++|+.+.+.
T Consensus       148 ~~~~~~-------------------~~~~~~i~~~l~~----~---------~~~~~~~i~vSA~~g~gi~~L~~~l~~~  195 (408)
T 1s0u_A          148 VDEKQA-------------------EENYEQIKEFVKG----T---------IAENAPIIPISAHHEANIDVLLKAIQDF  195 (408)
T ss_dssp             SCTTTT-------------------TTHHHHHHHHHTT----S---------TTTTCCEEEC------CHHHHHHHHHHH
T ss_pred             CCHHHH-------------------HHHHHHHHHHHhh----c---------CCCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence            643210                   0122333333221    0         0123567889999999999999998875


Q ss_pred             H
Q 018283          347 L  347 (358)
Q Consensus       347 i  347 (358)
                      +
T Consensus       196 i  196 (408)
T 1s0u_A          196 I  196 (408)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.46  E-value=4.1e-13  Score=132.13  Aligned_cols=119  Identities=13%  Similarity=0.171  Sum_probs=74.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHH-------HHHHHHHHHHcCCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMM-------ETKELFDWVLKQPCFEKT  255 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~-------~~~~~~~~i~~~~~~~~~  255 (358)
                      ......+.+|||+|++.|...+..+++.+|++|+|+|.++           .+++       ...+.+..+..   ..-.
T Consensus        80 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-----------gsfe~~~~~~~qt~~~~~~~~~---~~~~  145 (435)
T 1jny_A           80 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-----------GEYEAGMSVEGQTREHIILAKT---MGLD  145 (435)
T ss_dssp             ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-----------THHHHHHSTTCHHHHHHHHHHH---TTCT
T ss_pred             ecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-----------CccccccccchHHHHHHHHHHH---cCCC
Confidence            5667889999999999999999999999999999999752           2222       12222222111   1224


Q ss_pred             cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283          256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL  335 (358)
Q Consensus       256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n  335 (358)
                      |+++++||+|+....              +     .+...++..+.+...+..+    .-   ....+.++.+||++++|
T Consensus       146 ~iivviNK~Dl~~~~--------------~-----~~~~~~~~~~~i~~~~~~~----~~---~~~~~~~i~iSA~~g~~  199 (435)
T 1jny_A          146 QLIVAVNKMDLTEPP--------------Y-----DEKRYKEIVDQVSKFMRSY----GF---NTNKVRFVPVVAPSGDN  199 (435)
T ss_dssp             TCEEEEECGGGSSST--------------T-----CHHHHHHHHHHHHHHHHHT----TC---CCTTCEEEECBTTTTBT
T ss_pred             eEEEEEEcccCCCcc--------------c-----cHHHHHHHHHHHHHHHHHc----CC---CcCCceEEEeecccCcc
Confidence            699999999986420              0     0011122223333333221    10   01236788999999999


Q ss_pred             HHHHHH
Q 018283          336 VKKTFK  341 (358)
Q Consensus       336 i~~vf~  341 (358)
                      |.++++
T Consensus       200 v~e~~~  205 (435)
T 1jny_A          200 ITHKSE  205 (435)
T ss_dssp             TTBCCS
T ss_pred             cccccc
Confidence            986554

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.45  E-value=6.3e-13  Score=131.50  Aligned_cols=71  Identities=20%  Similarity=0.318  Sum_probs=40.6

Q ss_pred             cccceEEEEEecCCCchhhhhHh--------hhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWI--------HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~--------~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ...+..+.+|||+|++.....+.        .+++++|++|+|+|.++          .... ....++..+ .     +
T Consensus       268 ~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~----------~~~~-~~~~i~~~l-~-----~  330 (462)
T 3geh_A          268 VVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAAT----------GWTT-GDQEIYEQV-K-----H  330 (462)
T ss_dssp             EETTEEEEECC--------------------CCCCSCSEEEEEEETTT----------CSCH-HHHHHHHHH-T-----T
T ss_pred             EECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCC----------CCCH-HHHHHHHhc-c-----C
Confidence            34567889999999977654443        36889999999999853          1111 113344433 2     3


Q ss_pred             CcEEEEeeCCCchhhh
Q 018283          255 TSFMLFLNKFDIFEKK  270 (358)
Q Consensus       255 ~~iilv~NK~Dl~~ek  270 (358)
                      .|+++|+||+|+..+.
T Consensus       331 ~piivV~NK~Dl~~~~  346 (462)
T 3geh_A          331 RPLILVMNKIDLVEKQ  346 (462)
T ss_dssp             SCEEEEEECTTSSCGG
T ss_pred             CcEEEEEECCCCCcch
Confidence            6999999999997543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.45  E-value=4.2e-13  Score=131.06  Aligned_cols=116  Identities=14%  Similarity=0.162  Sum_probs=75.7

Q ss_pred             eEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 018283          187 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI  266 (358)
Q Consensus       187 ~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl  266 (358)
                      ..+.+|||+|++.|.+.+......+|++|+|+|.++-       .......+.+..+..+      ...|+++++||+|+
T Consensus        83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g-------~~~~qt~e~l~~~~~~------~~~~iivviNK~Dl  149 (410)
T 1kk1_A           83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP-------CPRPQTREHLMALQII------GQKNIIIAQNKIEL  149 (410)
T ss_dssp             EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSC-------SSCHHHHHHHHHHHHH------TCCCEEEEEECGGG
T ss_pred             cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCC-------CCChhHHHHHHHHHHc------CCCcEEEEEECccC
Confidence            6899999999999988888888899999999997520       0022223333333322      23589999999999


Q ss_pred             hhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283          267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       267 ~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~  346 (358)
                      ..+....                   ...++..+|+.    ..         ....+.++.+||++++||.++|+.+.+.
T Consensus       150 ~~~~~~~-------------------~~~~~i~~~l~----~~---------~~~~~~~i~vSA~~g~gi~~L~~~l~~~  197 (410)
T 1kk1_A          150 VDKEKAL-------------------ENYRQIKEFIE----GT---------VAENAPIIPISALHGANIDVLVKAIEDF  197 (410)
T ss_dssp             SCHHHHH-------------------HHHHHHHHHHT----TS---------TTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCHHHHH-------------------HHHHHHHHHHH----hc---------CcCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence            6432100                   11122222211    10         0123567889999999999999998875


Q ss_pred             H
Q 018283          347 L  347 (358)
Q Consensus       347 i  347 (358)
                      +
T Consensus       198 ~  198 (410)
T 1kk1_A          198 I  198 (410)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.45  E-value=4.4e-13  Score=131.90  Aligned_cols=128  Identities=13%  Similarity=0.017  Sum_probs=77.8

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      ..|..+....+      ......+.+|||+||+.|.+.+..++..+|++|+|+|.++        ..   +....+++..
T Consensus        89 GiTi~~~~~~~------~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~--------g~---~~qt~~~l~~  151 (434)
T 1zun_B           89 GITIDVAYRYF------STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY--------GV---QTQTRRHSYI  151 (434)
T ss_dssp             -CCCCCEEEEE------ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTT--------CS---CHHHHHHHHH
T ss_pred             CcEEEeeeeEe------ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC--------CC---cHHHHHHHHH
Confidence            33444444455      5567889999999999999999999999999999999852        11   1222333322


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +..   ....|+++++||+|+.....                     ..+++..+.+...+..+    ..   ....+.+
T Consensus       152 ~~~---~~~~~iIvviNK~Dl~~~~~---------------------~~~~~i~~~~~~~~~~~----g~---~~~~~~~  200 (434)
T 1zun_B          152 ASL---LGIKHIVVAINKMDLNGFDE---------------------RVFESIKADYLKFAEGI----AF---KPTTMAF  200 (434)
T ss_dssp             HHH---TTCCEEEEEEECTTTTTSCH---------------------HHHHHHHHHHHHHHHTT----TC---CCSEEEE
T ss_pred             HHH---cCCCeEEEEEEcCcCCcccH---------------------HHHHHHHHHHHHHHHHh----CC---CccCceE
Confidence            211   12236999999999864100                     01111122222222111    00   0134778


Q ss_pred             EEeeccChhhHHHHHH
Q 018283          326 YRTTALDPKLVKKTFK  341 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~  341 (358)
                      +.+||++++||.++|+
T Consensus       201 i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          201 VPMSALKGDNVVNKSE  216 (434)
T ss_dssp             EECCTTTCTTTSSCCT
T ss_pred             EEEeccCCCCcccccc
Confidence            8999999999988544

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.45  E-value=1.4e-13  Score=132.21  Aligned_cols=114  Identities=14%  Similarity=0.132  Sum_probs=54.9

Q ss_pred             cceEEEEEecCCC-------chhhhhHh-------hhhcCCc-------------EEEEEEEccccccccccccccchHH
Q 018283          185 SGEVYRLFDVGGQ-------RNERRKWI-------HLFEGVS-------------AVIFCAAISEYDQTLFEDEQKNRMM  237 (358)
Q Consensus       185 ~~~~l~i~D~~Gq-------~~~r~~w~-------~y~~~~~-------------~iIfv~dls~~d~~~~~~~~~~~l~  237 (358)
                      ..+.+.+|||+|+       ++++.++.       .|+++++             +++|+++-+        ......+.
T Consensus        93 ~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~--------~~~l~~~d  164 (361)
T 2qag_A           93 VKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF--------GHGLKPLD  164 (361)
T ss_dssp             EEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS--------SSSCCHHH
T ss_pred             cccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC--------CCCcchhH
Confidence            3468999999999       88888887       8887544             455555421        01112221


Q ss_pred             HHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCC
Q 018283          238 ETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPD  317 (358)
Q Consensus       238 ~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~  317 (358)
                        ..+++.+ .    .++|+++|+||+|+...+.                       +.    .+........       
T Consensus       165 --~~~~~~l-~----~~~piIlV~NK~Dl~~~~e-----------------------v~----~~k~~i~~~~-------  203 (361)
T 2qag_A          165 --VAFMKAI-H----NKVNIVPVIAKADTLTLKE-----------------------RE----RLKKRILDEI-------  203 (361)
T ss_dssp             --HHHHHHT-C----S-SCEEEEEECCSSSCHHH-----------------------HH----HHHHHHHHHT-------
T ss_pred             --HHHHHHh-c----cCCCEEEEEECCCCCCHHH-----------------------HH----HHHHHHHHHH-------
Confidence              1333333 2    4689999999999864321                       11    1111111211       


Q ss_pred             CCCceEEEEEeeccChhhHHHHHHHHHHHHHH
Q 018283          318 RVDRVFKIYRTTALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       318 ~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~  349 (358)
                       ....+.++.+||+++.+ .+.|..+.+.|.+
T Consensus       204 -~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~  233 (361)
T 2qag_A          204 -EEHNIKIYHLPDAESDE-DEDFKEQTRLLKA  233 (361)
T ss_dssp             -TCC-CCSCCCC----------CHHHHHHHHH
T ss_pred             -HHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence             12346678899999999 8899988888865

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.45  E-value=1.7e-13  Score=135.65  Aligned_cols=109  Identities=19%  Similarity=0.210  Sum_probs=70.5

Q ss_pred             cccceEEEEEecCC--------CchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          183 KKSGEVYRLFDVGG--------QRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       183 ~~~~~~l~i~D~~G--------q~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ...+..+.+|||+|        ++.++..+..++++++++|||+|.++            .+.....++...+..   .+
T Consensus        67 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~------------~~~~~d~~l~~~l~~---~~  131 (456)
T 4dcu_A           67 EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGRE------------GVTAADEEVAKILYR---TK  131 (456)
T ss_dssp             TTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSS------------CSCHHHHHHHHHHTT---CC
T ss_pred             EECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCC------------CCChHHHHHHHHHHH---cC
Confidence            45567899999999        89999999999999999999999631            111222334444443   47


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      +|++|++||+|+.+.....         .++                     ..+     +   -.   ..+.+||+++.
T Consensus       132 ~pvilV~NK~D~~~~~~~~---------~e~---------------------~~l-----g---~~---~~~~iSA~~g~  170 (456)
T 4dcu_A          132 KPVVLAVNKLDNTEMRANI---------YDF---------------------YSL-----G---FG---EPYPISGTHGL  170 (456)
T ss_dssp             SCEEEEEECC------------------CCS---------------------GGG-----S---SS---SEEECCTTTCT
T ss_pred             CCEEEEEECccchhhhhhH---------HHH---------------------HHc-----C---CC---ceEEeeccccc
Confidence            8999999999986432100         000                     000     0   00   13578999999


Q ss_pred             hHHHHHHHHHHHH
Q 018283          335 LVKKTFKLVDETL  347 (358)
Q Consensus       335 ni~~vf~~i~~~i  347 (358)
                      |+.++|+.+.+.+
T Consensus       171 gv~~L~~~i~~~l  183 (456)
T 4dcu_A          171 GLGDLLDAVAEHF  183 (456)
T ss_dssp             THHHHHHHHHTTG
T ss_pred             chHHHHHHHHhhc
Confidence            9999999887655

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.45  E-value=3.2e-13  Score=128.63  Aligned_cols=117  Identities=11%  Similarity=0.157  Sum_probs=76.9

Q ss_pred             eEEEEEecCCCc----hhhhhHhhhhc---CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC-CCCCCCcEE
Q 018283          187 EVYRLFDVGGQR----NERRKWIHLFE---GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSFM  258 (358)
Q Consensus       187 ~~l~i~D~~Gq~----~~r~~w~~y~~---~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~-~~~~~~~ii  258 (358)
                      ..+.+|||+|+.    ..+.++..|++   .++++|+|+|+++++       ..+.+.+...++..+... +.+.++|++
T Consensus       206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~-------~~~~~~~~~~~~~eL~~~~~~l~~~p~i  278 (342)
T 1lnz_A          206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLE-------GRDPYDDYLTINQELSEYNLRLTERPQI  278 (342)
T ss_dssp             CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSS-------CCCHHHHHHHHHHHHHHSCSSTTTSCBC
T ss_pred             ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCccc-------ccChHHHHHHHHHHHHHhhhhhcCCCEE
Confidence            689999999963    34455566655   599999999986321       134555555555555432 334678999


Q ss_pred             EEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHH
Q 018283          259 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK  338 (358)
Q Consensus       259 lv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~  338 (358)
                      ||+||+|+..++                          +..+-+.+.+             ...+.++.+||++++||++
T Consensus       279 lV~NK~Dl~~~~--------------------------e~~~~l~~~l-------------~~~~~v~~iSA~tg~gi~e  319 (342)
T 1lnz_A          279 IVANKMDMPEAA--------------------------ENLEAFKEKL-------------TDDYPVFPISAVTREGLRE  319 (342)
T ss_dssp             BEEECTTSTTHH--------------------------HHHHHHHHHC-------------CSCCCBCCCSSCCSSTTHH
T ss_pred             EEEECccCCCCH--------------------------HHHHHHHHHh-------------hcCCCEEEEECCCCcCHHH
Confidence            999999986431                          0011111111             0013467799999999999


Q ss_pred             HHHHHHHHHHH
Q 018283          339 TFKLVDETLRR  349 (358)
Q Consensus       339 vf~~i~~~i~~  349 (358)
                      +|++|.+.+..
T Consensus       320 L~~~l~~~l~~  330 (342)
T 1lnz_A          320 LLFEVANQLEN  330 (342)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHHhh
Confidence            99999988753

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.45  E-value=5.5e-14  Score=141.12  Aligned_cols=117  Identities=16%  Similarity=0.135  Sum_probs=78.5

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  264 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~  264 (358)
                      .+..+.+|||+||+.|...+..+++.+|++|+|+|.++           ..+..+.+.+..+..    .++|+++++||+
T Consensus        50 ~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~d-----------g~~~qt~e~l~~~~~----~~vPiIVViNKi  114 (537)
T 3izy_P           50 SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADD-----------GVMKQTVESIQHAKD----AHVPIVLAINKC  114 (537)
T ss_dssp             CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSS-----------CCCHHHHHHHHHHHT----TTCCEEECCBSG
T ss_pred             CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCC-----------CccHHHHHHHHHHHH----cCCcEEEEEecc
Confidence            34578999999999999999999999999999999742           223344455544433    267999999999


Q ss_pred             CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283          265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD  344 (358)
Q Consensus       265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~  344 (358)
                      |+.......  .                .  .+...+      ..     ........+.++.+||++++||.++|+.+.
T Consensus       115 Dl~~~~~~~--v----------------~--~~l~~~------~~-----~~e~~~~~~~iv~vSAktG~GI~eLle~I~  163 (537)
T 3izy_P          115 DKAEADPEK--V----------------K--KELLAY------DV-----VCEDYGGDVQAVHVSALTGENMMALAEATI  163 (537)
T ss_dssp             GGTTTSCCS--S----------------S--SHHHHT------TS-----CCCCSSSSEEECCCCSSSSCSSHHHHHHHH
T ss_pred             cccccchHH--H----------------H--HHHHhh------hh-----hHHhcCCCceEEEEECCCCCCchhHHHHHH
Confidence            996532110  0                0  000000      00     000011236778899999999999999988


Q ss_pred             HHH
Q 018283          345 ETL  347 (358)
Q Consensus       345 ~~i  347 (358)
                      ..+
T Consensus       164 ~l~  166 (537)
T 3izy_P          164 ALA  166 (537)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            764

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.45  E-value=6.5e-13  Score=127.94  Aligned_cols=128  Identities=10%  Similarity=0.029  Sum_probs=83.5

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      ..|.++....+      ...+..+.+|||+|++.|.+....+++.+|++|+|+| +.        ..   +....+++..
T Consensus        45 giTi~~~~~~~------~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~--------g~---~~qt~e~~~~  106 (370)
T 2elf_A           45 GTSSDITMYNN------DKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ--------GL---DAHTGECIIA  106 (370)
T ss_dssp             EEESSSEEEEE------CSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT--------CC---CHHHHHHHHH
T ss_pred             CEEEEeeEEEE------ecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC--------CC---cHHHHHHHHH
Confidence            45666666666      6667789999999999999888999999999999998 52        11   1222333333


Q ss_pred             HHcCCCCCCCcE-EEEee-CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceE
Q 018283          246 VLKQPCFEKTSF-MLFLN-KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF  323 (358)
Q Consensus       246 i~~~~~~~~~~i-ilv~N-K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~  323 (358)
                      +..    .++|. ++++| |+|+ .+..                       .++..+-+    .++....     .-..+
T Consensus       107 ~~~----~~i~~~ivvvNNK~Dl-~~~~-----------------------~~~~~~~i----~~~l~~~-----~~~~~  149 (370)
T 2elf_A          107 LDL----LGFKHGIIALTRSDST-HMHA-----------------------IDELKAKL----KVITSGT-----VLQDW  149 (370)
T ss_dssp             HHH----TTCCEEEEEECCGGGS-CHHH-----------------------HHHHHHHH----HHHTTTS-----TTTTC
T ss_pred             HHH----cCCCeEEEEEEeccCC-CHHH-----------------------HHHHHHHH----HHHHHhc-----CCCce
Confidence            222    14566 88888 9999 4321                       11111111    1111100     01236


Q ss_pred             EEEE--eeccC---hhhHHHHHHHHHHHHH
Q 018283          324 KIYR--TTALD---PKLVKKTFKLVDETLR  348 (358)
Q Consensus       324 ~~~~--tSA~d---~~ni~~vf~~i~~~i~  348 (358)
                      .++.  +||++   ++||+++|+.+.+.+-
T Consensus       150 ~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~  179 (370)
T 2elf_A          150 ECISLNTNKSAKNPFEGVDELKARINEVAE  179 (370)
T ss_dssp             EEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred             EEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence            7888  99999   9999999999988764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.44  E-value=6.6e-13  Score=130.78  Aligned_cols=118  Identities=12%  Similarity=0.192  Sum_probs=71.5

Q ss_pred             cceEEEEEecCCCchhhhhH------------hhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCC
Q 018283          185 SGEVYRLFDVGGQRNERRKW------------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  252 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w------------~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~  252 (358)
                      .+..+.+|||+|+++.....            ..+++.++++++|+|.++          .....+ ..+...+..    
T Consensus       226 ~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~----------~~~~~~-~~i~~~l~~----  290 (439)
T 1mky_A          226 DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQ----------GITRQD-QRMAGLMER----  290 (439)
T ss_dssp             TTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTT----------CCCHHH-HHHHHHHHH----
T ss_pred             CCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCC----------CCCHHH-HHHHHHHHH----
Confidence            44578999999996554332            346788999999999752          111111 222222222    


Q ss_pred             CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283          253 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD  332 (358)
Q Consensus       253 ~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d  332 (358)
                      .++|+++++||.|+.+.+-                     ...++..+.+...+..+           ....++++||++
T Consensus       291 ~~~~~ilv~NK~Dl~~~~~---------------------~~~~~~~~~~~~~~~~~-----------~~~~~~~~SA~~  338 (439)
T 1mky_A          291 RGRASVVVFNKWDLVVHRE---------------------KRYDEFTKLFREKLYFI-----------DYSPLIFTSADK  338 (439)
T ss_dssp             TTCEEEEEEECGGGSTTGG---------------------GCHHHHHHHHHHHCGGG-----------TTSCEEECBTTT
T ss_pred             cCCCEEEEEECccCCCchh---------------------hHHHHHHHHHHHHhccC-----------CCCcEEEEECCC
Confidence            2689999999999864321                     11233333444433221           123478899999


Q ss_pred             hhhHHHHHHHHHHHHHH
Q 018283          333 PKLVKKTFKLVDETLRR  349 (358)
Q Consensus       333 ~~ni~~vf~~i~~~i~~  349 (358)
                      |.||.++|+.+.+.+.+
T Consensus       339 g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          339 GWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999886644

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.43  E-value=1.9e-12  Score=118.25  Aligned_cols=128  Identities=9%  Similarity=0.132  Sum_probs=71.8

Q ss_pred             cccceEEEEEecCCCchh-----------hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283          183 KKSGEVYRLFDVGGQRNE-----------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  251 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~-----------r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~  251 (358)
                      ...+..+.+|||+|+..+           .+.+..++++++++|+|+|.+.+.         ........++..+... .
T Consensus        67 ~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~---------~~~~~~~~~l~~~~~~-~  136 (260)
T 2xtp_A           67 SWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT---------SQDQQAAQRVKEIFGE-D  136 (260)
T ss_dssp             EETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCC---------HHHHHHHHHHHHHHCG-G
T ss_pred             EeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCC---------HHHHHHHHHHHHHhCc-h
Confidence            345678999999998654           223344789999999999985321         1122334555555432 1


Q ss_pred             CCCCcEEEEee-CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCce--EEEEEe
Q 018283          252 FEKTSFMLFLN-KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRV--FKIYRT  328 (358)
Q Consensus       252 ~~~~~iilv~N-K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~--~~~~~t  328 (358)
                      . ..|+++|+| |+|+..+.+..       +..+.     +   ..++.++ ...   +         ..+.  +..+.+
T Consensus       137 ~-~~~~i~vv~nK~Dl~~~~~~~-------~i~~~-----~---~~~~~~~-~~~---~---------~~~~~~~~~~~~  187 (260)
T 2xtp_A          137 A-MGHTIVLFTHKEDLNGGSLMD-------YMHDS-----D---NKALSKL-VAA---C---------GGRICAFNNRAE  187 (260)
T ss_dssp             G-GGGEEEEEECGGGGTTCCHHH-------HHHHC-----C---CHHHHHH-HHH---T---------TTCEEECCTTCC
T ss_pred             h-hccEEEEEEcccccCCccHHH-------HHHhc-----c---hHHHHHH-HHH---h---------CCeEEEecCccc
Confidence            1 245555555 99986432100       00000     0   0111111 111   1         0111  111568


Q ss_pred             eccChhhHHHHHHHHHHHHHH
Q 018283          329 TALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       329 SA~d~~ni~~vf~~i~~~i~~  349 (358)
                      ||+++.|+.++|+.|.+.+..
T Consensus       188 SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          188 GSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHh
Confidence            999999999999999988765

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.41  E-value=2.8e-12  Score=126.98  Aligned_cols=84  Identities=17%  Similarity=0.120  Sum_probs=56.6

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchH---HHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRM---METKELF  243 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l---~~~~~~~  243 (358)
                      .|..+....|      ......+.+|||+||+.|.+.+..++..+|++|+|+|.++-       ....++   ..+.+.+
T Consensus        71 iTi~~~~~~~------~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g-------~~~~sf~~~~qt~~~~  137 (458)
T 1f60_A           71 ITIDIALWKF------ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG-------EFEAGISKDGQTREHA  137 (458)
T ss_dssp             CCCSCSCEEE------ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH-------HHHHHTCTTSHHHHHH
T ss_pred             cEEEEEEEEE------ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC-------ccccccCcchhHHHHH
Confidence            3444444555      56678899999999999999999999999999999997420       000000   0222222


Q ss_pred             HHHHcCCCCCCCc-EEEEeeCCCch
Q 018283          244 DWVLKQPCFEKTS-FMLFLNKFDIF  267 (358)
Q Consensus       244 ~~i~~~~~~~~~~-iilv~NK~Dl~  267 (358)
                      ..+..    .++| +++++||+|+.
T Consensus       138 ~~~~~----~~v~~iivviNK~Dl~  158 (458)
T 1f60_A          138 LLAFT----LGVRQLIVAVNKMDSV  158 (458)
T ss_dssp             HHHHH----TTCCEEEEEEECGGGG
T ss_pred             HHHHH----cCCCeEEEEEEccccc
Confidence            22221    1454 99999999996

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.41  E-value=8e-13  Score=134.47  Aligned_cols=113  Identities=11%  Similarity=0.049  Sum_probs=78.0

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ...+.+++|||+|+..|...|..+++.+|++|+|+|.++-          ... .+...|.....    .+.|+++|+||
T Consensus        68 g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~g----------v~~-qt~~~~~~~~~----~~ipiIvViNK  132 (599)
T 3cb4_D           68 GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQG----------VEA-QTLANCYTAME----MDLEVVPVLNK  132 (599)
T ss_dssp             SCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTC----------CCT-HHHHHHHHHHH----TTCEEEEEEEC
T ss_pred             CCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC----------CCH-HHHHHHHHHHH----CCCCEEEeeec
Confidence            3468999999999999999999999999999999998521          111 22233333332    26799999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      +|+..+.                        .++..+.+.+.+. +     .      ...++.+||+++.||+++|+.+
T Consensus       133 iDl~~a~------------------------~~~v~~ei~~~lg-~-----~------~~~vi~vSAktg~GI~~Ll~~I  176 (599)
T 3cb4_D          133 IDLPAAD------------------------PERVAEEIEDIVG-I-----D------ATDAVRCSAKTGVGVQDVLERL  176 (599)
T ss_dssp             TTSTTCC------------------------HHHHHHHHHHHTC-C-----C------CTTCEEECTTTCTTHHHHHHHH
T ss_pred             cCccccc------------------------HHHHHHHHHHHhC-C-----C------cceEEEeecccCCCchhHHHHH
Confidence            9986431                        2222333333221 0     0      0125779999999999999999


Q ss_pred             HHHH
Q 018283          344 DETL  347 (358)
Q Consensus       344 ~~~i  347 (358)
                      .+.+
T Consensus       177 ~~~l  180 (599)
T 3cb4_D          177 VRDI  180 (599)
T ss_dssp             HHHS
T ss_pred             hhcC
Confidence            8765

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.41  E-value=2.2e-13  Score=135.63  Aligned_cols=114  Identities=11%  Similarity=0.049  Sum_probs=74.5

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ..+..+.+|||+||+.|...|..++..+|++|+|+|.++        .....   +.+.+..+..    .++|+++++||
T Consensus        48 ~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~--------g~~~q---T~e~l~~~~~----~~vPiIVviNK  112 (501)
T 1zo1_I           48 TENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADD--------GVMPQ---TIEAIQHAKA----AQVPVVVAVNK  112 (501)
T ss_dssp             TTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTT--------BSCTT---THHHHHHHHH----TTCCEEEEEEC
T ss_pred             ECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeeccc--------CccHH---HHHHHHHHHh----cCceEEEEEEe
Confidence            344578999999999999999999999999999999752        11111   2222222222    26799999999


Q ss_pred             CCchhhhhcc--CCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          264 FDIFEKKVLK--VPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       264 ~Dl~~eki~~--~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      +|+.......  ..+.....+++.                                 ....+.++.+||++++||.++|+
T Consensus       113 iDl~~~~~~~v~~~l~~~~~~~~~---------------------------------~~~~~~~v~vSAktG~gI~eLle  159 (501)
T 1zo1_I          113 IDKPEADPDRVKNELSQYGILPEE---------------------------------WGGESQFVHVSAKAGTGIDELLD  159 (501)
T ss_dssp             SSSSTTCCCCTTCCCCCCCCCTTC---------------------------------CSSSCEEEECCTTTCTTCTTHHH
T ss_pred             ccccccCHHHHHHHHHHhhhhHHH---------------------------------hCCCccEEEEeeeeccCcchhhh
Confidence            9997532111  011100000000                                 01236688899999999999999


Q ss_pred             HHHH
Q 018283          342 LVDE  345 (358)
Q Consensus       342 ~i~~  345 (358)
                      .+..
T Consensus       160 ~I~~  163 (501)
T 1zo1_I          160 AILL  163 (501)
T ss_dssp             HTTT
T ss_pred             hhhh
Confidence            8764

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.40  E-value=2.8e-12  Score=130.46  Aligned_cols=142  Identities=13%  Similarity=0.076  Sum_probs=81.6

Q ss_pred             ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283          186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD  265 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D  265 (358)
                      ...+.+|||+||+.|...|..+++.+|++|+|+|.++        .-   ...+.+.+..+..    .++|+++++||+|
T Consensus        69 ~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~--------Gv---~~qT~e~l~~l~~----~~vPiIVViNKiD  133 (594)
T 1g7s_A           69 LPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINE--------GF---KPQTQEALNILRM----YRTPFVVAANKID  133 (594)
T ss_dssp             CCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTT--------CC---CHHHHHHHHHHHH----TTCCEEEEEECGG
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC--------Cc---cHhHHHHHHHHHH----cCCeEEEEecccc
Confidence            3469999999999999999999999999999999852        10   1122333333322    3689999999999


Q ss_pred             chhhhhccCCCcccccccccccCCCCcccHHHHH----HHHHHHHHHHhhhc---CCCCCCCceEEEEEeeccChhhHHH
Q 018283          266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAY----EFVKKKFEELYFQS---TAPDRVDRVFKIYRTTALDPKLVKK  338 (358)
Q Consensus       266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~----~~i~~~f~~~~~~~---~~~~~~~~~~~~~~tSA~d~~ni~~  338 (358)
                      +....-..   ...+++....  ..+ ..+.+.+    .-+...+.+.....   ..-......+.++.+||++++||.+
T Consensus       134 l~~~~~~~---~~~~~~e~sa--~~~-~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~e  207 (594)
T 1g7s_A          134 RIHGWRVH---EGRPFMETFS--KQD-IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPE  207 (594)
T ss_dssp             GSTTCCCC---TTCCHHHHHT--TSC-HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHH
T ss_pred             cccccccc---cCCchHHHHH--HhH-HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchh
Confidence            96421100   0011111110  011 1222221    11222222111000   0000012456788899999999999


Q ss_pred             HHHHHHHHHH
Q 018283          339 TFKLVDETLR  348 (358)
Q Consensus       339 vf~~i~~~i~  348 (358)
                      +++++...+.
T Consensus       208 Ll~~I~~~~~  217 (594)
T 1g7s_A          208 LLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhhcc
Confidence            9999988664

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.40  E-value=1.6e-12  Score=132.05  Aligned_cols=114  Identities=9%  Similarity=0.078  Sum_probs=78.1

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ...+.+++|||+|+..|...+..+++.++++|+|+|.++          .... .+...|.....    .+.|+++|+||
T Consensus        70 g~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~----------gv~~-qt~~~~~~a~~----~~ipiIvviNK  134 (600)
T 2ywe_A           70 GNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQ----------GIEA-QTVANFWKAVE----QDLVIIPVINK  134 (600)
T ss_dssp             SCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTT----------BCCH-HHHHHHHHHHH----TTCEEEEEEEC
T ss_pred             CCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCC----------CccH-HHHHHHHHHHH----CCCCEEEEEec
Confidence            345889999999999999999999999999999999852          1111 22333333333    26899999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      +|+..+.                        .++..+-+.+.+        +    -....++.+||+++.||.++|+++
T Consensus       135 iDl~~a~------------------------~~~v~~el~~~l--------g----~~~~~vi~vSAktg~GI~~Lle~I  178 (600)
T 2ywe_A          135 IDLPSAD------------------------VDRVKKQIEEVL--------G----LDPEEAILASAKEGIGIEEILEAI  178 (600)
T ss_dssp             TTSTTCC------------------------HHHHHHHHHHTS--------C----CCGGGCEECBTTTTBSHHHHHHHH
T ss_pred             cCccccC------------------------HHHHHHHHHHhh--------C----CCcccEEEEEeecCCCchHHHHHH
Confidence            9986431                        122222222221        0    000125779999999999999999


Q ss_pred             HHHHH
Q 018283          344 DETLR  348 (358)
Q Consensus       344 ~~~i~  348 (358)
                      .+.+.
T Consensus       179 ~~~lp  183 (600)
T 2ywe_A          179 VNRIP  183 (600)
T ss_dssp             HHHSC
T ss_pred             HHhcc
Confidence            87653

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.39  E-value=4.4e-13  Score=137.09  Aligned_cols=122  Identities=16%  Similarity=0.134  Sum_probs=75.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ...+..+.||||+|++.+.+.+..++++++++|+|+|.++-.   .+ ........+...+..+..   ....|++|++|
T Consensus       241 ~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~---~e-~~~~~~~qt~e~l~~~~~---lgi~~iIVVvN  313 (611)
T 3izq_1          241 STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNA---FE-SGFDLDGQTKEHMLLASS---LGIHNLIIAMN  313 (611)
T ss_dssp             ECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHH---HH-TTCCTTSHHHHHHHHHHT---TTCCEEEEEEE
T ss_pred             ecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCc---cc-ccchhhhHHHHHHHHHHH---cCCCeEEEEEe
Confidence            567789999999999999999999999999999999985200   00 000001112222222211   22346999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT  339 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v  339 (358)
                      |+|+.....                     ...++..+.+...+..+.    .   ....+.++.+||++|.||.++
T Consensus       314 KiDl~~~~~---------------------~~~~ei~~~l~~~l~~~g----~---~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          314 KMDNVDWSQ---------------------QRFEEIKSKLLPYLVDIG----F---FEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CTTTTTTCH---------------------HHHHHHHHHHHHHHHHHT----C---CGGGCEEEECCTTTCTTTSSC
T ss_pred             cccccchhH---------------------HHHHHHHHHHHHHHHhhc----c---cccCccEEeeecccCCCcccc
Confidence            999864210                     123333444444443331    0   112467888999999999865

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.39  E-value=1.2e-12  Score=129.98  Aligned_cols=89  Identities=16%  Similarity=0.131  Sum_probs=43.2

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      ..|.++....|      ...+..+.+|||+||+.|.+.+..+++.+|++|+|+|.++-..   + .+.+....+.+.+..
T Consensus       106 giTi~~~~~~~------~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~---e-~sf~~~~qt~e~l~~  175 (467)
T 1r5b_A          106 GKTVEVGRAYF------ETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEF---E-AGFERGGQTREHAVL  175 (467)
T ss_dssp             -------CCEE------ECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHH---H-HTTSTTCCHHHHHHH
T ss_pred             CceEEeeeEEE------ecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCcc---c-cccCCCCcHHHHHHH
Confidence            44555544455      5557889999999999999999999999999999999852100   0 000000112222222


Q ss_pred             HHcCCCCCCCc-EEEEeeCCCchh
Q 018283          246 VLKQPCFEKTS-FMLFLNKFDIFE  268 (358)
Q Consensus       246 i~~~~~~~~~~-iilv~NK~Dl~~  268 (358)
                      ...    .++| +++++||+|+..
T Consensus       176 ~~~----~~vp~iivviNK~Dl~~  195 (467)
T 1r5b_A          176 ART----QGINHLVVVINKMDEPS  195 (467)
T ss_dssp             HHH----TTCSSEEEEEECTTSTT
T ss_pred             HHH----cCCCEEEEEEECccCCC
Confidence            211    2466 999999999853

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.38  E-value=1e-13  Score=127.32  Aligned_cols=112  Identities=10%  Similarity=0.053  Sum_probs=75.6

Q ss_pred             ecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH---HHHcCCC-CCCCcEEEEeeC-CCch
Q 018283          193 DVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD---WVLKQPC-FEKTSFMLFLNK-FDIF  267 (358)
Q Consensus       193 D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~---~i~~~~~-~~~~~iilv~NK-~Dl~  267 (358)
                      |+|||++.|+.|.+||++++++|||||.+          +.+|++ +.+.+.   .+++... +.++|++|++|| +|+.
T Consensus       193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSs----------DreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp  261 (312)
T 3l2o_B          193 QQGSRYSVIPQIQKVCEVVDGFIYVANAE----------AHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV  261 (312)
T ss_dssp             ----CCCCCHHHHHHHHHCSEEEECCBCB----------TTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS
T ss_pred             CCCCHHHHHHHHHHHhcCCCEEEEEecCC----------cHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc
Confidence            47999999999999999999999999974          445543 444443   4554432 468999999997 6885


Q ss_pred             hhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHH
Q 018283          268 EKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       268 ~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                      .+.                       ...+..+.    . .+..       -+|.+++.-|||++|+|+.+.++|+.+.+
T Consensus       262 ~Am-----------------------s~~EI~e~----L-~L~~-------l~r~W~Iq~csA~tGeGL~EGldWL~~~l  306 (312)
T 3l2o_B          262 KRM-----------------------PCFYLAHE----L-HLNL-------LNHPWLVQDTEAETLTGFLNGIEWILEEV  306 (312)
T ss_dssp             CBC-----------------------CHHHHHHH----T-TGGG-------GCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred             CCC-----------------------CHHHHHHH----c-CCcc-------CCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence            431                       11222211    1 1110       13679999999999999999999999887


Q ss_pred             HHh
Q 018283          348 RRR  350 (358)
Q Consensus       348 ~~~  350 (358)
                      .++
T Consensus       307 ~~k  309 (312)
T 3l2o_B          307 ESK  309 (312)
T ss_dssp             CC-
T ss_pred             Hhh
Confidence            543

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.34  E-value=1.3e-11  Score=131.87  Aligned_cols=71  Identities=18%  Similarity=0.196  Sum_probs=52.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc-EEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-iilv~  261 (358)
                      +.....+.+|||+||+.|.+.+..+++.+|++|+|+|.++-        ......+.+..+..       .++| +++++
T Consensus       355 ~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdG--------v~~QTrEhL~ll~~-------lgIP~IIVVI  419 (1289)
T 3avx_A          355 DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLGRQ-------VGVPYIIVFL  419 (1289)
T ss_dssp             ECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTC--------SCTTHHHHHHHHHH-------HTCSCEEEEE
T ss_pred             cCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCcc--------CcHHHHHHHHHHHH-------cCCCeEEEEE
Confidence            56678999999999999999999999999999999998531        11222233322222       1567 89999


Q ss_pred             eCCCchh
Q 018283          262 NKFDIFE  268 (358)
Q Consensus       262 NK~Dl~~  268 (358)
                      ||+|+..
T Consensus       420 NKiDLv~  426 (1289)
T 3avx_A          420 NKCDMVD  426 (1289)
T ss_dssp             ECCTTCC
T ss_pred             eeccccc
Confidence            9999863

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.34  E-value=1.7e-11  Score=126.65  Aligned_cols=70  Identities=14%  Similarity=0.083  Sum_probs=54.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+++|||+|+..|+..+..+++.++++|+|+|.++         ...  .....++..+..    .++|+++++|
T Consensus        70 ~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~---------g~~--~qt~~~~~~~~~----~~ip~ilv~N  134 (665)
T 2dy1_A           70 LFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEA---------GVQ--VGTERAWTVAER----LGLPRMVVVT  134 (665)
T ss_dssp             EETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTT---------CSC--HHHHHHHHHHHH----TTCCEEEEEE
T ss_pred             eeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCc---------ccc--hhHHHHHHHHHH----ccCCEEEEec
Confidence            4567899999999999999999999999999999999742         111  122344444433    2689999999


Q ss_pred             CCCch
Q 018283          263 KFDIF  267 (358)
Q Consensus       263 K~Dl~  267 (358)
                      |+|+.
T Consensus       135 KiD~~  139 (665)
T 2dy1_A          135 KLDKG  139 (665)
T ss_dssp             CGGGC
T ss_pred             CCchh
Confidence            99985

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.33  E-value=9.9e-12  Score=113.90  Aligned_cols=75  Identities=8%  Similarity=0.073  Sum_probs=50.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhc---------CCcEEEEEEEccccccccccccccchH-HHHHHHHHHHHcCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFE---------GVSAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQPCF  252 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~---------~~~~iIfv~dls~~d~~~~~~~~~~~l-~~~~~~~~~i~~~~~~  252 (358)
                      ...+..+.+|||+|+..++.....+++         +++++|||+|++.        ...... ..++..+.......  
T Consensus        80 ~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~--------~~~~~~~~~~~~~l~~~~~~~--  149 (262)
T 3def_A           80 TMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDV--------YAVDELDKQVVIAITQTFGKE--  149 (262)
T ss_dssp             EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSC--------SCCCHHHHHHHHHHHHHHCGG--
T ss_pred             EECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCC--------CCCCHHHHHHHHHHHHHhchh--
Confidence            456679999999999887666555554         8899999998742        112222 23445555443321  


Q ss_pred             CCCcEEEEeeCCCch
Q 018283          253 EKTSFMLFLNKFDIF  267 (358)
Q Consensus       253 ~~~~iilv~NK~Dl~  267 (358)
                      ...|+++++||+|+.
T Consensus       150 ~~~~~ivv~nK~Dl~  164 (262)
T 3def_A          150 IWCKTLLVLTHAQFS  164 (262)
T ss_dssp             GGGGEEEEEECTTCC
T ss_pred             hhcCEEEEEeCcccC
Confidence            124899999999985

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.30  E-value=4.3e-12  Score=127.60  Aligned_cols=81  Identities=16%  Similarity=0.211  Sum_probs=57.9

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  246 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i  246 (358)
                      .|.......+      ..++..+.+|||+|++.|+..+..+++.+|++|+|+|.++-         ..  ......+..+
T Consensus        68 iTi~~~~~~~------~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g---------~~--~~t~~~~~~~  130 (529)
T 2h5e_A           68 ISITTSVMQF------PYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG---------VE--DRTRKLMEVT  130 (529)
T ss_dssp             --CCTTEEEE------EETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC---------SC--HHHHHHHHHH
T ss_pred             cceeeeEEEE------EECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCcc---------ch--HHHHHHHHHH
Confidence            3444444555      66788999999999999999999999999999999997521         11  1223333333


Q ss_pred             HcCCCCCCCcEEEEeeCCCchh
Q 018283          247 LKQPCFEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       247 ~~~~~~~~~~iilv~NK~Dl~~  268 (358)
                       ..   .++|+++|+||+|+..
T Consensus       131 -~~---~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A          131 -RL---RDTPILTFMNKLDRDI  148 (529)
T ss_dssp             -TT---TTCCEEEEEECTTSCC
T ss_pred             -HH---cCCCEEEEEcCcCCcc
Confidence             21   3689999999999854

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.30  E-value=1.5e-12  Score=132.74  Aligned_cols=76  Identities=18%  Similarity=0.242  Sum_probs=38.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccc--cccchHHHHHHHHHHHHcCCCCCCCc-EEE
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFED--EQKNRMMETKELFDWVLKQPCFEKTS-FML  259 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~--~~~~~l~~~~~~~~~i~~~~~~~~~~-iil  259 (358)
                      ...+..+.||||+|++.|.+.+..++..++++|+|+|.++-.   .+.  .......+.+.+...       .++| +++
T Consensus       251 ~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~---~e~gi~~~~qt~e~l~~~~~-------lgip~iIv  320 (592)
T 3mca_A          251 ESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN---FERGFLENGQTREHAYLLRA-------LGISEIVV  320 (592)
T ss_dssp             --------CCEEESSSEEEEECCC-------CCSEEEEEECC---SSTTSCSCSSHHHHHHHHHH-------SSCCCEEE
T ss_pred             EeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCc---cccccccchHHHHHHHHHHH-------cCCCeEEE
Confidence            455678999999999999999999999999999999985200   000  001222222222221       1344 999


Q ss_pred             EeeCCCchh
Q 018283          260 FLNKFDIFE  268 (358)
Q Consensus       260 v~NK~Dl~~  268 (358)
                      ++||+|+..
T Consensus       321 viNKiDl~~  329 (592)
T 3mca_A          321 SVNKLDLMS  329 (592)
T ss_dssp             EEECGGGGT
T ss_pred             EEecccccc
Confidence            999999864

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.29  E-value=2.1e-11  Score=107.02  Aligned_cols=112  Identities=15%  Similarity=0.124  Sum_probs=66.5

Q ss_pred             EEEEEecCCCch----------hhhhHhhhh---cCCcEEEEEEEccccccccccccccchHH-HHHHHHHHHHcCCCCC
Q 018283          188 VYRLFDVGGQRN----------ERRKWIHLF---EGVSAVIFCAAISEYDQTLFEDEQKNRMM-ETKELFDWVLKQPCFE  253 (358)
Q Consensus       188 ~l~i~D~~Gq~~----------~r~~w~~y~---~~~~~iIfv~dls~~d~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~  253 (358)
                      .+.+||++|+..          +++....|+   ..++++++|+|++...         .... +...++.   .    .
T Consensus        73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~---------~~~~~~~~~~~~---~----~  136 (210)
T 1pui_A           73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL---------KDLDQQMIEWAV---D----S  136 (210)
T ss_dssp             TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC---------CHHHHHHHHHHH---H----T
T ss_pred             CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC---------chhHHHHHHHHH---H----c
Confidence            578999999842          333444566   4788999999985311         1111 1122221   1    2


Q ss_pred             CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283          254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP  333 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~  333 (358)
                      +.|+++++||+|+.......                   ..+..+..++    .+          ....+..+.|||+|+
T Consensus       137 ~~~~~~v~nK~D~~s~~~~~-------------------~~~~~~~~~~----~~----------~~~~~~~~~~Sal~~  183 (210)
T 1pui_A          137 NIAVLVLLTKADKLASGARK-------------------AQLNMVREAV----LA----------FNGDVQVETFSSLKK  183 (210)
T ss_dssp             TCCEEEEEECGGGSCHHHHH-------------------HHHHHHHHHH----GG----------GCSCEEEEECBTTTT
T ss_pred             CCCeEEEEecccCCCchhHH-------------------HHHHHHHHHH----Hh----------cCCCCceEEEeecCC
Confidence            57899999999985421000                   0122222222    11          012356678999999


Q ss_pred             hhHHHHHHHHHHHHH
Q 018283          334 KLVKKTFKLVDETLR  348 (358)
Q Consensus       334 ~ni~~vf~~i~~~i~  348 (358)
                      .+++++|+.+.+.+.
T Consensus       184 ~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          184 QGVDKLRQKLDTWFS  198 (210)
T ss_dssp             BSHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999887653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.26  E-value=4.2e-11  Score=112.09  Aligned_cols=69  Identities=17%  Similarity=0.171  Sum_probs=47.4

Q ss_pred             ccceEEEEEecCCCc---------hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          184 KSGEVYRLFDVGGQR---------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~---------~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      .....+.+|||+|+.         .+...+..+++.+++++||+|.+++          .....  ..++.+ ..   .+
T Consensus        53 ~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~----------~~~~~--~i~~~l-~~---~~  116 (301)
T 1ega_A           53 EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW----------TPDDE--MVLNKL-RE---GK  116 (301)
T ss_dssp             ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCC----------CHHHH--HHHHHH-HS---SS
T ss_pred             ECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCC----------CHHHH--HHHHHH-Hh---cC
Confidence            356789999999998         3444556788999999999997531          11111  222233 21   36


Q ss_pred             CcEEEEeeCCCchh
Q 018283          255 TSFMLFLNKFDIFE  268 (358)
Q Consensus       255 ~~iilv~NK~Dl~~  268 (358)
                      .|+++++||+|+..
T Consensus       117 ~P~ilvlNK~D~~~  130 (301)
T 1ega_A          117 APVILAVNKVDNVQ  130 (301)
T ss_dssp             SCEEEEEESTTTCC
T ss_pred             CCEEEEEECcccCc
Confidence            89999999999854

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.26  E-value=4.5e-11  Score=123.93  Aligned_cols=83  Identities=13%  Similarity=0.012  Sum_probs=58.6

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      ..|.+.....+      ...+..+.+|||+|+..|+..|..+++.+|++|+|+|.++..          . ......|..
T Consensus        62 giTi~~~~~~~------~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~----------~-~~t~~~~~~  124 (691)
T 1dar_A           62 GITITAAVTTC------FWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV----------E-PQSETVWRQ  124 (691)
T ss_dssp             -----CCEEEE------EETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCS----------C-HHHHHHHHH
T ss_pred             ccccccceEEE------EECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCc----------c-hhhHHHHHH
Confidence            34444444555      556789999999999999999999999999999999985321          1 122334444


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhh
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEK  269 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~e  269 (358)
                      +..    .+.|+++|+||+|+...
T Consensus       125 ~~~----~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A          125 AEK----YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             HHH----TTCCEEEEEECTTSTTC
T ss_pred             HHH----cCCCEEEEEECCCcccC
Confidence            433    26899999999999754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.25  E-value=7.2e-12  Score=116.39  Aligned_cols=69  Identities=12%  Similarity=0.145  Sum_probs=47.8

Q ss_pred             ceEEEEEecCCCc-------------hhhhhHhhhhcCCcEEE-EEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283          186 GEVYRLFDVGGQR-------------NERRKWIHLFEGVSAVI-FCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  251 (358)
Q Consensus       186 ~~~l~i~D~~Gq~-------------~~r~~w~~y~~~~~~iI-fv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~  251 (358)
                      ...+.+|||+|+.             .++..+..|+++++++| +|+|.++         +. ...+...+++.+ ..  
T Consensus       124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~---------~~-~~~~~~~~~~~~-~~--  190 (299)
T 2aka_B          124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS---------DL-ANSDALKIAKEV-DP--  190 (299)
T ss_dssp             CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSS---------CG-GGCHHHHHHHHH-CT--
T ss_pred             CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCc---------ch-hhhHHHHHHHHh-CC--
Confidence            4689999999964             56788899999998776 7888742         11 111222344443 21  


Q ss_pred             CCCCcEEEEeeCCCchh
Q 018283          252 FEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       252 ~~~~~iilv~NK~Dl~~  268 (358)
                       .+.|+++|+||+|+..
T Consensus       191 -~~~~~i~V~NK~Dl~~  206 (299)
T 2aka_B          191 -QGQRTIGVITKLDLMD  206 (299)
T ss_dssp             -TCSSEEEEEECGGGSC
T ss_pred             -CCCeEEEEEEccccCC
Confidence             3689999999999864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.25  E-value=2e-11  Score=114.36  Aligned_cols=105  Identities=11%  Similarity=0.152  Sum_probs=73.4

Q ss_pred             EEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccc-hHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 018283          188 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKN-RMMETKELFDWVLKQPCFEKTSFMLFLNKFDI  266 (358)
Q Consensus       188 ~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~-~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl  266 (358)
                      .+.+||+  |++++.+|..||+++|++|+|+|+++          .. ++.....|+..+..    .++|++||+||+||
T Consensus        64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~----------~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL  127 (301)
T 1u0l_A           64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKM----------PETSTYIIDKFLVLAEK----NELETVMVINKMDL  127 (301)
T ss_dssp             SEEEEEE--CCCSCEETTTTEESCCEEEEEECSST----------TCCCHHHHHHHHHHHHH----TTCEEEEEECCGGG
T ss_pred             eEEEEEE--ccccceeeccccccCCEEEEEEeCCC----------CCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHc
Confidence            7899999  99999999999999999999999853          12 22233334433322    36899999999999


Q ss_pred             hhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283          267 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       267 ~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~  345 (358)
                      ..++.                       ++++.++.. .|.            .. +.+++|||++++||+++|..+..
T Consensus       128 ~~~~~-----------------------v~~~~~~~~-~~~------------~~-~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          128 YDEDD-----------------------LRKVRELEE-IYS------------GL-YPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             CCHHH-----------------------HHHHHHHHH-HHT------------TT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred             CCchh-----------------------HHHHHHHHH-HHh------------hh-CcEEEEECCCCcCHHHHHHHhcC
Confidence            64321                       122233221 111            12 55788999999999999987753

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.25  E-value=6.2e-11  Score=108.98  Aligned_cols=76  Identities=7%  Similarity=0.091  Sum_probs=47.0

Q ss_pred             cccceEEEEEecCCCchhhhh-------Hhhh--hcCCcEEEEEEEccccccccccccccchH-HHHHHHHHHHHcCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNERRK-------WIHL--FEGVSAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQPCF  252 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~-------w~~y--~~~~~~iIfv~dls~~d~~~~~~~~~~~l-~~~~~~~~~i~~~~~~  252 (358)
                      ...+..+.+|||+|+..+...       +..|  +++++++|||+|++..        ..... .+++..+...+...  
T Consensus        83 ~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~--------~~~~~~~~~~~~l~~~~~~~--  152 (270)
T 1h65_A           83 SRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY--------RVDNLDKLVAKAITDSFGKG--  152 (270)
T ss_dssp             EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC--------CCCHHHHHHHHHHHHHHCGG--
T ss_pred             eeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC--------cCCHHHHHHHHHHHHHhCcc--
Confidence            556788999999999765422       2223  3479999999997421        11111 23334443332211  


Q ss_pred             CCCcEEEEeeCCCchh
Q 018283          253 EKTSFMLFLNKFDIFE  268 (358)
Q Consensus       253 ~~~~iilv~NK~Dl~~  268 (358)
                      ...|+++|+||+|+..
T Consensus       153 ~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          153 IWNKAIVALTHAQFSP  168 (270)
T ss_dssp             GGGGEEEEEECCSCCC
T ss_pred             cccCEEEEEECcccCC
Confidence            1269999999999853

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.24  E-value=9.8e-11  Score=121.60  Aligned_cols=70  Identities=11%  Similarity=0.088  Sum_probs=53.6

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  264 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~  264 (358)
                      ....++||||+|+..|...+..+++.+|++|+|+|.++-           ....+...|..+..    .+.|+++|+||+
T Consensus        80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~qt~~~~~~~~~----~~ip~ilviNKi  144 (704)
T 2rdo_7           80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG-----------VQPQSETVWRQANK----YKVPRIAFVNKM  144 (704)
T ss_pred             CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCC-----------CcHHHHHHHHHHHH----cCCCEEEEEeCC
Confidence            448999999999999999999999999999999998531           11223334444332    268999999999


Q ss_pred             Cchhh
Q 018283          265 DIFEK  269 (358)
Q Consensus       265 Dl~~e  269 (358)
                      |+...
T Consensus       145 D~~~~  149 (704)
T 2rdo_7          145 DRMGA  149 (704)
T ss_pred             Ccccc
Confidence            98654

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.19  E-value=2.5e-10  Score=118.34  Aligned_cols=72  Identities=11%  Similarity=0.102  Sum_probs=55.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ...+..+.+|||+|+..+...+..+++.+|++|+|+|.++-          .. ......|..+..    .+.|+++|+|
T Consensus        71 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g----------~~-~~~~~~~~~~~~----~~~p~ilviN  135 (693)
T 2xex_A           71 AWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSG----------VE-PQTETVWRQATT----YGVPRIVFVN  135 (693)
T ss_dssp             EETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTB----------SC-HHHHHHHHHHHH----TTCCEEEEEE
T ss_pred             EECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCC----------Cc-HHHHHHHHHHHH----cCCCEEEEEE
Confidence            45678999999999999999999999999999999997521          11 122344444433    2689999999


Q ss_pred             CCCchhh
Q 018283          263 KFDIFEK  269 (358)
Q Consensus       263 K~Dl~~e  269 (358)
                      |+|+...
T Consensus       136 K~Dl~~~  142 (693)
T 2xex_A          136 KMDKLGA  142 (693)
T ss_dssp             CTTSTTC
T ss_pred             CCCcccc
Confidence            9999753

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.17  E-value=3.2e-11  Score=112.88  Aligned_cols=115  Identities=11%  Similarity=0.096  Sum_probs=56.7

Q ss_pred             ccceEEEEEecCCC-------chhhhhHh-------hhhcCCc-------------EEEEEEEccccccccccccccchH
Q 018283          184 KSGEVYRLFDVGGQ-------RNERRKWI-------HLFEGVS-------------AVIFCAAISEYDQTLFEDEQKNRM  236 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq-------~~~r~~w~-------~y~~~~~-------------~iIfv~dls~~d~~~~~~~~~~~l  236 (358)
                      .....+++||++|+       +.++.++.       .|+++.+             +++|+.+-+.        ...+..
T Consensus        73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~--------~~Ld~~  144 (301)
T 2qnr_A           73 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG--------HGLKPL  144 (301)
T ss_dssp             -CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS--------SSCCHH
T ss_pred             CcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc--------cCCCHH
Confidence            34578999999999       67777776       7776543             3454443210        011222


Q ss_pred             HHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCC
Q 018283          237 METKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAP  316 (358)
Q Consensus       237 ~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~  316 (358)
                      .  .++++.+ .    .++|+++|+||.|+...+...                   ...+++.+++..            
T Consensus       145 ~--~~~l~~l-~----~~~~iilV~~K~Dl~~~~e~~-------------------~~~~~~~~~~~~------------  186 (301)
T 2qnr_A          145 D--VAFMKAI-H----NKVNIVPVIAKADTLTLKERE-------------------RLKKRILDEIEE------------  186 (301)
T ss_dssp             H--HHHHHHH-T----TTSCEEEEECCGGGSCHHHHH-------------------HHHHHHHHHHHH------------
T ss_pred             H--HHHHHHH-H----hcCCEEEEEEeCCCCCHHHHH-------------------HHHHHHHHHHHH------------
Confidence            1  2344443 1    257999999999986432100                   001222332211            


Q ss_pred             CCCCceEEEEEeeccChhhHHHHHHHHHHHHHH
Q 018283          317 DRVDRVFKIYRTTALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       317 ~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~  349 (358)
                          ..+.++++||+++ |++++|..+.+.+.+
T Consensus       187 ----~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          187 ----HNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             ----TTCCCCCCC----------CHHHHHHHHT
T ss_pred             ----cCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence                1255788999999 999999999988864

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.16  E-value=6.6e-10  Score=115.27  Aligned_cols=134  Identities=11%  Similarity=0.191  Sum_probs=78.4

Q ss_pred             eEEEEEecCCCch---hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          187 EVYRLFDVGGQRN---ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       187 ~~l~i~D~~Gq~~---~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ..+.+|||+|...   ....+..|++++|++|||+|.+.          .....+ ...+...+..   .+.|+++|+||
T Consensus       174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~----------~~s~~e-~~~l~~~l~~---~~~~iiiVlNK  239 (695)
T 2j69_A          174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQ----------PCTLGE-RRYLENYIKG---RGLTVFFLVNA  239 (695)
T ss_dssp             TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTS----------TTCHHH-HHHHHHHTTT---SCCCEEEEEEC
T ss_pred             CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCC----------ccchhH-HHHHHHHHHh---hCCCEEEEEEC
Confidence            4689999999765   45778889999999999999742          122222 2333333332   25689999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCC-CCCCceEEEEEeecc-----------
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAP-DRVDRVFKIYRTTAL-----------  331 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~-~~~~~~~~~~~tSA~-----------  331 (358)
                      +|+.......  .             ......+++.+.+...+.......... +.......++.+||+           
T Consensus       240 ~Dl~~~~~~~--~-------------ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          240 WDQVRESLID--P-------------DDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             GGGGGGGCSS--T-------------TCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             cccccccccC--h-------------hhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence            9997543110  0             000122333333333322211110000 000012246789999           


Q ss_pred             ---ChhhHHHHHHHHHHHHHH
Q 018283          332 ---DPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       332 ---d~~ni~~vf~~i~~~i~~  349 (358)
                         ++.|+.++++.+.+.+..
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHH
T ss_pred             hhhhccCHHHHHHHHHHHHHH
Confidence               999999999999887754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.09  E-value=6.4e-09  Score=91.87  Aligned_cols=107  Identities=15%  Similarity=0.071  Sum_probs=66.6

Q ss_pred             cceEEEEEecCCCchhhhhHhhhh-cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLF-EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~-~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ....+.+|||+|+-.    .+.++ ...+.+|+|+|.+..+         ....    .+....      +.|+++++||
T Consensus       107 ~~~d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~---------~~~~----~~~~~~------~~~~iiv~NK  163 (221)
T 2wsm_A          107 SDCDLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGD---------DVVE----KHPEIF------RVADLIVINK  163 (221)
T ss_dssp             TTCSEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCT---------THHH----HCHHHH------HTCSEEEEEC
T ss_pred             CCCCEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcc---------hhhh----hhhhhh------hcCCEEEEec
Confidence            356789999999621    11222 3678899999985321         1111    111111      3688999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      +|+....-                     ...++..+++...              ...+.++.+||++++|+.++|+++
T Consensus       164 ~Dl~~~~~---------------------~~~~~~~~~~~~~--------------~~~~~i~~~Sa~~g~gi~~l~~~l  208 (221)
T 2wsm_A          164 VALAEAVG---------------------ADVEKMKADAKLI--------------NPRAKIIEMDLKTGKGFEEWIDFL  208 (221)
T ss_dssp             GGGHHHHT---------------------CCHHHHHHHHHHH--------------CTTSEEEECBTTTTBTHHHHHHHH
T ss_pred             ccCCcchh---------------------hHHHHHHHHHHHh--------------CCCCeEEEeecCCCCCHHHHHHHH
Confidence            99865321                     2234444444321              012457889999999999999999


Q ss_pred             HHHHHH
Q 018283          344 DETLRR  349 (358)
Q Consensus       344 ~~~i~~  349 (358)
                      .+.+..
T Consensus       209 ~~~~~~  214 (221)
T 2wsm_A          209 RGILNV  214 (221)
T ss_dssp             HHHHC-
T ss_pred             HHHHHH
Confidence            987753

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.08  E-value=1.6e-09  Score=103.56  Aligned_cols=116  Identities=15%  Similarity=0.113  Sum_probs=70.5

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ..+..+.||||+|-..   -.......+|.+|+|+|.+.-++          +    .   .+ . ....+.|+++|+||
T Consensus       169 ~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~----------~----~---~l-~-~~~~~~p~ivVlNK  226 (355)
T 3p32_A          169 AAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQ----------L----Q---GI-K-KGVLELADIVVVNK  226 (355)
T ss_dssp             HTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCT----------T----T---TC-C-TTSGGGCSEEEEEC
T ss_pred             hCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCcc----------H----H---HH-H-HhHhhcCCEEEEEC
Confidence            3567899999999533   23344689999999999642211          0    0   00 0 11234689999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      +|+..+.                       +.....+.+...+....     +........++.+||++++||+++++.|
T Consensus       227 ~Dl~~~~-----------------------~~~~~~~~l~~~l~~~~-----~~~~~~~~~vi~iSA~~g~Gi~~L~~~i  278 (355)
T 3p32_A          227 ADGEHHK-----------------------EARLAARELSAAIRLIY-----PREALWRPPVLTMSAVEGRGLAELWDTV  278 (355)
T ss_dssp             CCGGGHH-----------------------HHHHHHHHHHHHHHHHS-----TTCCSCCCCEEEEBGGGTBSHHHHHHHH
T ss_pred             CCCcChh-----------------------HHHHHHHHHHHHHhhcc-----ccccCCCCceEEEEcCCCCCHHHHHHHH
Confidence            9986431                       12223333333332221     0000112346789999999999999999


Q ss_pred             HHHHHH
Q 018283          344 DETLRR  349 (358)
Q Consensus       344 ~~~i~~  349 (358)
                      .+.+..
T Consensus       279 ~~~~~~  284 (355)
T 3p32_A          279 ERHRQV  284 (355)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887643

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.06  E-value=2.7e-10  Score=109.16  Aligned_cols=72  Identities=15%  Similarity=0.104  Sum_probs=51.5

Q ss_pred             cceEEEEEecCCCchh-------------hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283          185 SGEVYRLFDVGGQRNE-------------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  251 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~-------------r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~  251 (358)
                      ....+.+|||+|+..+             +.+...|+++++++|+|+|.+.-+         ....+++.++..+.    
T Consensus       134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~---------~~~~~~~~l~~~~~----  200 (360)
T 3t34_A          134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQD---------LATSDAIKISREVD----  200 (360)
T ss_dssp             TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSC---------GGGCHHHHHHHHSC----
T ss_pred             CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCC---------cCCHHHHHHHHHhc----
Confidence            3457999999999876             778889999999999999864211         11123344444432    


Q ss_pred             CCCCcEEEEeeCCCchhh
Q 018283          252 FEKTSFMLFLNKFDIFEK  269 (358)
Q Consensus       252 ~~~~~iilv~NK~Dl~~e  269 (358)
                      ..+.|+++|+||+|+..+
T Consensus       201 ~~~~~~i~V~nK~Dl~~~  218 (360)
T 3t34_A          201 PSGDRTFGVLTKIDLMDK  218 (360)
T ss_dssp             TTCTTEEEEEECGGGCCT
T ss_pred             ccCCCEEEEEeCCccCCC
Confidence            136799999999999753

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.05  E-value=3.9e-10  Score=119.34  Aligned_cols=70  Identities=14%  Similarity=0.115  Sum_probs=54.0

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ..++.+++|||+|+..|...|..+++.+|++|+|+|.++          ..... ....|..+..    .++|+++|+||
T Consensus        95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~----------g~~~q-t~~~~~~~~~----~~~p~ilviNK  159 (842)
T 1n0u_A           95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE----------GVCVQ-TETVLRQALG----ERIKPVVVINK  159 (842)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTT----------BSCHH-HHHHHHHHHH----TTCEEEEEEEC
T ss_pred             CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCC----------CCCHH-HHHHHHHHHH----cCCCeEEEEEC
Confidence            347899999999999999999999999999999999852          11222 2333444433    26899999999


Q ss_pred             CCchh
Q 018283          264 FDIFE  268 (358)
Q Consensus       264 ~Dl~~  268 (358)
                      +|+..
T Consensus       160 ~D~~~  164 (842)
T 1n0u_A          160 VDRAL  164 (842)
T ss_dssp             HHHHH
T ss_pred             CCcch
Confidence            99974

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.99  E-value=7.3e-10  Score=108.06  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.6

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      .++|+|+|++|||||||++.+.
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~   52 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLF   52 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHT
T ss_pred             CEEEEEECCCCCcHHHHHHHHh
Confidence            4689999999999999999873

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.98  E-value=2.9e-09  Score=94.43  Aligned_cols=61  Identities=13%  Similarity=0.207  Sum_probs=41.7

Q ss_pred             CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283          254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP  333 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~  333 (358)
                      +.|+++++||+|+..++.                     ...+++.+++...              .....++++||+++
T Consensus       164 ~~~~iiv~NK~Dl~~~~~---------------------~~~~~~~~~~~~~--------------~~~~~~~~~Sa~~g  208 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVG---------------------ADIKKMENDAKRI--------------NPDAEVVLLSLKTM  208 (226)
T ss_dssp             TTCSEEEEECGGGHHHHT---------------------CCHHHHHHHHHHH--------------CTTSEEEECCTTTC
T ss_pred             hcCCEEEEeccccCchhH---------------------HHHHHHHHHHHHh--------------CCCCeEEEEEecCC
Confidence            368899999999965421                     1234444443321              01245788999999


Q ss_pred             hhHHHHHHHHHHHHHH
Q 018283          334 KLVKKTFKLVDETLRR  349 (358)
Q Consensus       334 ~ni~~vf~~i~~~i~~  349 (358)
                      +|+.++|+.+.+.+..
T Consensus       209 ~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          209 EGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999887643

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.98  E-value=5.2e-09  Score=101.99  Aligned_cols=114  Identities=14%  Similarity=0.221  Sum_probs=68.6

Q ss_pred             eEEEEEecCCCch----hhhhHhhh---hcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEE
Q 018283          187 EVYRLFDVGGQRN----ERRKWIHL---FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML  259 (358)
Q Consensus       187 ~~l~i~D~~Gq~~----~r~~w~~y---~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iil  259 (358)
                      ..+.+||++|...    .+.+...+   .+.++.+++|+|++  +      .....+......+..+  .+.+.+.|.+|
T Consensus       205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls--~------~~~~~ls~g~~el~~l--a~aL~~~P~IL  274 (416)
T 1udx_A          205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA--D------EPLKTLETLRKEVGAY--DPALLRRPSLV  274 (416)
T ss_dssp             CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--S------CHHHHHHHHHHHHHHH--CHHHHHSCEEE
T ss_pred             ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--c------CCHHHHHHHHHHHHHH--hHHhhcCCEEE
Confidence            6789999999832    22232333   45799999999985  1      1112222222222222  11123568999


Q ss_pred             EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283          260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT  339 (358)
Q Consensus       260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v  339 (358)
                      ++||+|+....                           ....+...+.            ...+.++.+||+++++++++
T Consensus       275 VlNKlDl~~~~---------------------------~~~~l~~~l~------------~~g~~vi~iSA~~g~gi~eL  315 (416)
T 1udx_A          275 ALNKVDLLEEE---------------------------AVKALADALA------------REGLAVLPVSALTGAGLPAL  315 (416)
T ss_dssp             EEECCTTSCHH---------------------------HHHHHHHHHH------------TTTSCEEECCTTTCTTHHHH
T ss_pred             EEECCChhhHH---------------------------HHHHHHHHHH------------hcCCeEEEEECCCccCHHHH
Confidence            99999985321                           1111122211            11245678999999999999


Q ss_pred             HHHHHHHHHH
Q 018283          340 FKLVDETLRR  349 (358)
Q Consensus       340 f~~i~~~i~~  349 (358)
                      |+.|.+.+..
T Consensus       316 ~~~i~~~l~~  325 (416)
T 1udx_A          316 KEALHALVRS  325 (416)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998864

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.97  E-value=2.8e-09  Score=96.87  Aligned_cols=73  Identities=15%  Similarity=0.077  Sum_probs=43.0

Q ss_pred             ceEEEEEecCCCchhhhhHh------hhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEE
Q 018283          186 GEVYRLFDVGGQRNERRKWI------HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML  259 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r~~w~------~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iil  259 (358)
                      .+.+.+|||+|+......+.      .++.+ +.+|+|+|.+..       .+...+.............   .+.|+++
T Consensus       108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~-------~~~~~~~~~~~~~~~~~~~---~~~p~~i  176 (262)
T 1yrb_A          108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEIL-------KKPNDYCFVRFFALLIDLR---LGATTIP  176 (262)
T ss_dssp             HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGC-------CSHHHHHHHHHHHHHHHHH---HTSCEEE
T ss_pred             cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhh-------cCHHHHHHHHHHHHHHhcc---cCCCeEE
Confidence            36799999999987644322      24566 899999986421       1112222222111111111   2579999


Q ss_pred             EeeCCCchhh
Q 018283          260 FLNKFDIFEK  269 (358)
Q Consensus       260 v~NK~Dl~~e  269 (358)
                      |+||+|+...
T Consensus       177 v~NK~D~~~~  186 (262)
T 1yrb_A          177 ALNKVDLLSE  186 (262)
T ss_dssp             EECCGGGCCH
T ss_pred             EEeccccccc
Confidence            9999998643

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.94  E-value=6.4e-10  Score=106.30  Aligned_cols=69  Identities=12%  Similarity=0.148  Sum_probs=44.8

Q ss_pred             ceEEEEEecCCCc-------------hhhhhHhhhhcCCcEEEEEE-EccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283          186 GEVYRLFDVGGQR-------------NERRKWIHLFEGVSAVIFCA-AISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  251 (358)
Q Consensus       186 ~~~l~i~D~~Gq~-------------~~r~~w~~y~~~~~~iIfv~-dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~  251 (358)
                      ...+.+|||+|..             .++.++..|+++++.+|+++ |.+         .+... .++..+++.+..   
T Consensus       129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~---------~~~~~-~~~~~i~~~~~~---  195 (353)
T 2x2e_A          129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPAN---------SDLAN-SDALKVAKEVDP---  195 (353)
T ss_dssp             CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETT---------SCGGG-CHHHHHHHHHCT---
T ss_pred             CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCC---------Cccch-hHHHHHHHHhCc---
Confidence            4679999999963             46778888998777666654 432         11111 122334444421   


Q ss_pred             CCCCcEEEEeeCCCchh
Q 018283          252 FEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       252 ~~~~~iilv~NK~Dl~~  268 (358)
                       .+.|+++|+||+|+..
T Consensus       196 -~~~~~i~V~NK~Dl~~  211 (353)
T 2x2e_A          196 -QGQRTIGVITKLDLMD  211 (353)
T ss_dssp             -TCTTEEEEEECGGGSC
T ss_pred             -CCCceEEEeccccccC
Confidence             3689999999999964

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.93  E-value=2.2e-09  Score=100.44  Aligned_cols=110  Identities=16%  Similarity=0.163  Sum_probs=64.0

Q ss_pred             cceEEEEEecCCCch-------------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283          185 SGEVYRLFDVGGQRN-------------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  251 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~-------------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~  251 (358)
                      ....+.+|||+|...             ++..+..|+++++++|+|+|.+.-+.      ...   +...++..+ ..  
T Consensus       129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~------~~~---~~~~i~~~~-~~--  196 (315)
T 1jwy_B          129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL------ANS---DALQLAKEV-DP--  196 (315)
T ss_dssp             TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS------TTC---SHHHHHHHH-CS--
T ss_pred             CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch------hhh---HHHHHHHHh-CC--
Confidence            446899999999864             67788899999999999999642110      001   112233333 21  


Q ss_pred             CCCCcEEEEeeCCCchhhhh-----ccCCCcc--cccccccccCCCC---cccHHHHHHHHHHHHH
Q 018283          252 FEKTSFMLFLNKFDIFEKKV-----LKVPLNV--CEWFKDYQPVSTG---KQEIENAYEFVKKKFE  307 (358)
Q Consensus       252 ~~~~~iilv~NK~Dl~~eki-----~~~~l~~--~~~f~~y~~~~~g---~~~~~~~~~~i~~~f~  307 (358)
                       .+.|+++|+||+|+....-     ....+..  ..|++-...+..+   ..++.+..+.+.+.|.
T Consensus       197 -~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~  261 (315)
T 1jwy_B          197 -EGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK  261 (315)
T ss_dssp             -SCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             -CCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence             3689999999999864321     0011111  2333322111111   2567777777777664

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.90  E-value=3.3e-08  Score=99.72  Aligned_cols=84  Identities=21%  Similarity=0.264  Sum_probs=61.7

Q ss_pred             eeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH
Q 018283          165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD  244 (358)
Q Consensus       165 ~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~  244 (358)
                      |+-|+.-..+.+      ..++..++|.||+|+-.|..-...-++-+|++|+|+|..           ..-...+...|+
T Consensus        84 RGITI~s~~~~~------~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~-----------~GV~~qT~~v~~  146 (548)
T 3vqt_A           84 RGISVTTSVMQF------PYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAA-----------KGVEAQTRKLMD  146 (548)
T ss_dssp             ----CTTTEEEE------EETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETT-----------TBSCHHHHHHHH
T ss_pred             CCCcEeeceEEE------EECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecC-----------CCcccccHHHHH
Confidence            444544445666      778899999999999999888888889999999999963           223334556666


Q ss_pred             HHHcCCCCCCCcEEEEeeCCCchhh
Q 018283          245 WVLKQPCFEKTSFMLFLNKFDIFEK  269 (358)
Q Consensus       245 ~i~~~~~~~~~~iilv~NK~Dl~~e  269 (358)
                      .....    +.|+++|.||+|...+
T Consensus       147 ~a~~~----~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          147 VCRMR----ATPVMTFVNKMDREAL  167 (548)
T ss_dssp             HHHHT----TCCEEEEEECTTSCCC
T ss_pred             HHHHh----CCceEEEEecccchhc
Confidence            66543    6899999999998643

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.89  E-value=3e-09  Score=107.38  Aligned_cols=68  Identities=19%  Similarity=0.138  Sum_probs=49.1

Q ss_pred             eEEEEEecCCCch-----------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283          187 EVYRLFDVGGQRN-----------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT  255 (358)
Q Consensus       187 ~~l~i~D~~Gq~~-----------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~  255 (358)
                      ..+.+|||+|...           +...+..++.++|++|||+|.+.+          ....+...+++.+..    .+.
T Consensus       154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~----------~~~~~~~~~l~~l~~----~~~  219 (550)
T 2qpt_A          154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL----------EISDEFSEAIGALRG----HED  219 (550)
T ss_dssp             HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC----------CCCHHHHHHHHHTTT----CGG
T ss_pred             CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC----------CCCHHHHHHHHHHHh----cCC
Confidence            3689999999975           667888899999999999997532          111223344444322    257


Q ss_pred             cEEEEeeCCCchh
Q 018283          256 SFMLFLNKFDIFE  268 (358)
Q Consensus       256 ~iilv~NK~Dl~~  268 (358)
                      |+++|+||+|+..
T Consensus       220 pvilVlNK~Dl~~  232 (550)
T 2qpt_A          220 KIRVVLNKADMVE  232 (550)
T ss_dssp             GEEEEEECGGGSC
T ss_pred             CEEEEEECCCccC
Confidence            9999999999874

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.78  E-value=4.2e-08  Score=93.52  Aligned_cols=112  Identities=9%  Similarity=-0.026  Sum_probs=61.6

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH-HHHcCCCCCCCcEEEEeeC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD-WVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~-~i~~~~~~~~~~iilv~NK  263 (358)
                      .+..+.++||+|-.   .-+......++.+++|+|.+..          ...    +.+. .+      -+.|.++++||
T Consensus       165 ~~~~~iliDT~Gi~---~~~~~l~~~~d~vl~V~d~~~~----------~~~----~~i~~~i------l~~~~ivVlNK  221 (349)
T 2www_A          165 AGYDIILIETVGVG---QSEFAVADMVDMFVLLLPPAGG----------DEL----QGIKRGI------IEMADLVAVTK  221 (349)
T ss_dssp             TTCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC--------------------------------CCSCSEEEECC
T ss_pred             CCCCEEEEECCCcc---hhhhhHHhhCCEEEEEEcCCcc----------hhH----HHhHHHH------HhcCCEEEEee
Confidence            45678999999953   2345567899999999997521          111    1111 11      13578999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      +|+....                       +.......+.......     .+........++.+||++++|+.+++++|
T Consensus       222 ~Dl~~~~-----------------------~~~~~~~~l~~~l~~~-----~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I  273 (349)
T 2www_A          222 SDGDLIV-----------------------PARRIQAEYVSALKLL-----RKRSQVWKPKVIRISARSGEGISEMWDKM  273 (349)
T ss_dssp             CSGGGHH-----------------------HHHHHHHHHHHHHTTC-----C-----CCCEEEECCTTTCTTHHHHHHHH
T ss_pred             ecCCCch-----------------------hHHHHHHHHHHHHHhc-----CccccCCCceEEEEecCCCCCHHHHHHHH
Confidence            9986421                       0111111111111000     00000011345679999999999999998


Q ss_pred             HHHH
Q 018283          344 DETL  347 (358)
Q Consensus       344 ~~~i  347 (358)
                      .+.+
T Consensus       274 ~~~~  277 (349)
T 2www_A          274 KDFQ  277 (349)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.72  E-value=1e-08  Score=99.39  Aligned_cols=37  Identities=19%  Similarity=0.054  Sum_probs=23.6

Q ss_pred             ceEEEEEecCCCch----hhhhHh---hhhcCCcEEEEEEEccc
Q 018283          186 GEVYRLFDVGGQRN----ERRKWI---HLFEGVSAVIFCAAISE  222 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~----~r~~w~---~y~~~~~~iIfv~dls~  222 (358)
                      .+.+.+|||+|+..    .+.++.   .++++++++|+|+|.++
T Consensus        70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~  113 (397)
T 1wxq_A           70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (397)
T ss_dssp             EEEEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred             eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEeccc
Confidence            47899999999854    333443   45789999999999875

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.69  E-value=5.1e-08  Score=92.65  Aligned_cols=115  Identities=10%  Similarity=0.076  Sum_probs=65.4

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ..+..+.+|||+|.......   ..+.+|++|+|+|.+..+..       ..+..      ..      .+.|.++|+||
T Consensus       146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~-------~~l~~------~~------~~~p~ivv~NK  203 (341)
T 2p67_A          146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDL-------QGIKK------GL------MEVADLIVINK  203 (341)
T ss_dssp             HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC-------------CCCCH------HH------HHHCSEEEECC
T ss_pred             ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHH-------HHHHH------hh------hcccCEEEEEC
Confidence            34578899999997654332   46899999999997533210       00000      01      13578999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      +|+....                       ++....+.+...+...     .+........++.+||++++|++++++.|
T Consensus       204 ~Dl~~~~-----------------------~~~~~~~~l~~~l~~~-----~~~~~~~~~~vi~iSA~~g~gi~~L~~~l  255 (341)
T 2p67_A          204 DDGDNHT-----------------------NVAIARHMYESALHIL-----RRKYDEWQPRVLTCSALEKRGIDEIWHAI  255 (341)
T ss_dssp             CCTTCHH-----------------------HHHHHHHHHHHHHHHS-----CCSBTTBCCEEEECBGGGTBSHHHHHHHH
T ss_pred             CCCCChH-----------------------HHHHHHHHHHHHHHhc-----cccccCCCCcEEEeeCCCCCCHHHHHHHH
Confidence            9985431                       1122222222222211     00000012346679999999999999998


Q ss_pred             HHHHH
Q 018283          344 DETLR  348 (358)
Q Consensus       344 ~~~i~  348 (358)
                      .+.+.
T Consensus       256 ~~~~~  260 (341)
T 2p67_A          256 IDFKT  260 (341)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87653

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.60  E-value=4e-07  Score=86.92  Aligned_cols=37  Identities=14%  Similarity=0.160  Sum_probs=29.9

Q ss_pred             ceEEEEEecCCCchhh-------hhHhhhhcCCcEEEEEEEccc
Q 018283          186 GEVYRLFDVGGQRNER-------RKWIHLFEGVSAVIFCAAISE  222 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r-------~~w~~y~~~~~~iIfv~dls~  222 (358)
                      ...+.+|||+|+..+.       ..+..++++++++++|+|.++
T Consensus        65 ~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             eeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence            3579999999998653       234556899999999999985

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.58  E-value=5.8e-07  Score=86.12  Aligned_cols=38  Identities=11%  Similarity=0.142  Sum_probs=30.4

Q ss_pred             cceEEEEEecCCCchh-------hhhHhhhhcCCcEEEEEEEccc
Q 018283          185 SGEVYRLFDVGGQRNE-------RRKWIHLFEGVSAVIFCAAISE  222 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~-------r~~w~~y~~~~~~iIfv~dls~  222 (358)
                      ....+.+|||+|+...       ...+..++++++++++|+|.++
T Consensus        67 ~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           67 VPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             ECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             CCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            3467999999999764       2345567899999999999975

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.39  E-value=9e-07  Score=82.57  Aligned_cols=112  Identities=10%  Similarity=0.109  Sum_probs=72.1

Q ss_pred             ccceEEEEEe-c-----CCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcE
Q 018283          184 KSGEVYRLFD-V-----GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF  257 (358)
Q Consensus       184 ~~~~~l~i~D-~-----~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~i  257 (358)
                      +..+.+.+|| +     ..|++++.+...|+.++|++|+|+|+++-+      .+.+.+..++..++   .    .++|+
T Consensus        47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~------~s~~~l~~~l~~~~---~----~~~~~  113 (302)
T 2yv5_A           47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPE------FNNYLLDNMLVVYE---Y----FKVEP  113 (302)
T ss_dssp             TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTT------CCHHHHHHHHHHHH---H----TTCEE
T ss_pred             ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCC------CCHHHHHHHHHHHH---h----CCCCE
Confidence            4456677776 3     348889999999999999999999985310      12233333333222   2    36899


Q ss_pred             EEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHH
Q 018283          258 MLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK  337 (358)
Q Consensus       258 ilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~  337 (358)
                      +||+||+||..+...                    ...+++.+    .|...            .+.+++|||++++|++
T Consensus       114 ilV~NK~DL~~~~~v--------------------~~~~~~~~----~~~~~------------g~~~~~~SA~~g~gi~  157 (302)
T 2yv5_A          114 VIVFNKIDLLNEEEK--------------------KELERWIS----IYRDA------------GYDVLKVSAKTGEGID  157 (302)
T ss_dssp             EEEECCGGGCCHHHH--------------------HHHHHHHH----HHHHT------------TCEEEECCTTTCTTHH
T ss_pred             EEEEEcccCCCcccc--------------------HHHHHHHH----HHHHC------------CCeEEEEECCCCCCHH
Confidence            999999999543100                    00122222    22221            2467889999999999


Q ss_pred             HHHHHHH
Q 018283          338 KTFKLVD  344 (358)
Q Consensus       338 ~vf~~i~  344 (358)
                      ++|+.+.
T Consensus       158 ~L~~~l~  164 (302)
T 2yv5_A          158 ELVDYLE  164 (302)
T ss_dssp             HHHHHTT
T ss_pred             HHHhhcc
Confidence            9998764

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.39  E-value=1e-07  Score=98.00  Aligned_cols=84  Identities=17%  Similarity=0.148  Sum_probs=60.8

Q ss_pred             eeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH
Q 018283          165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD  244 (358)
Q Consensus       165 ~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~  244 (358)
                      |.-|.....+.+      ..++..+++.||+|+..|..-...-.+-+|++|+|+|..         ....  ..+...|+
T Consensus        51 RGITI~s~~~~~------~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~---------~GV~--~qT~~v~~  113 (638)
T 3j25_A           51 RGITIQTGITSF------QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAK---------DGVQ--AQTRILFH  113 (638)
T ss_dssp             HSSCSSCCCCCC------BCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESS---------CTTC--SHHHHHHH
T ss_pred             CCCcEEeeeEEE------EECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCC---------CCCc--HHHHHHHH
Confidence            344444444555      677889999999999999888888889999999999974         2222  23345555


Q ss_pred             HHHcCCCCCCCcEEEEeeCCCchhh
Q 018283          245 WVLKQPCFEKTSFMLFLNKFDIFEK  269 (358)
Q Consensus       245 ~i~~~~~~~~~~iilv~NK~Dl~~e  269 (358)
                      .....    ++|.++|.||+|....
T Consensus       114 ~a~~~----~lp~i~~INKmDr~~a  134 (638)
T 3j25_A          114 ALRKM----GIPTIFFINKIDQNGI  134 (638)
T ss_dssp             HHHHH----TCSCEECCEECCSSSC
T ss_pred             HHHHc----CCCeEEEEeccccccC
Confidence            55442    6789999999998643

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.37  E-value=1.1e-06  Score=84.29  Aligned_cols=103  Identities=10%  Similarity=0.059  Sum_probs=70.9

Q ss_pred             CCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCC
Q 018283          196 GQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVP  275 (358)
Q Consensus       196 Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~  275 (358)
                      .++.|++.+.+++++++++|+|+|+++++.            .+...+...+     .+.|+++|+||+||....     
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~------------~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~-----  112 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFNG------------SWLPGLHRFV-----GNNKVLLVGNKADLIPKS-----  112 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHHH------------HCCTTHHHHS-----SSSCEEEEEECGGGSCTT-----
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCcc------------cHHHHHHHHh-----CCCcEEEEEEChhcCCcc-----
Confidence            568999999999999999999999975421            1122233332     368999999999996421     


Q ss_pred             CcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283          276 LNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       276 l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~  346 (358)
                                       ...++..+|+...+....         -+...++.+||+++.|++++++.+.+.
T Consensus       113 -----------------~~~~~~~~~l~~~~~~~g---------~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          113 -----------------VKHDKVKHWMRYSAKQLG---------LKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             -----------------SCHHHHHHHHHHHHHHTT---------CCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             -----------------cCHHHHHHHHHHHHHHcC---------CCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence                             223445566655554321         112357889999999999999988654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.36  E-value=1.5e-06  Score=83.44  Aligned_cols=105  Identities=11%  Similarity=0.095  Sum_probs=71.8

Q ss_pred             CCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccC
Q 018283          195 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKV  274 (358)
Q Consensus       195 ~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~  274 (358)
                      ..|+.|++.+.+++++++.+|+|+|+++++..+     ...+       ...+     .+.|+++|+||+||....    
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~-----~~~l-------~~~l-----~~~piilV~NK~DLl~~~----  114 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNGSF-----IPGL-------PRFA-----ADNPILLVGNKADLLPRS----  114 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGGGC-----CSSH-------HHHC-----TTSCEEEEEECGGGSCTT----
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCCch-----hhHH-------HHHh-----CCCCEEEEEEChhcCCCc----
Confidence            468999999999999999999999998765211     1112       2222     367999999999996431    


Q ss_pred             CCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHH
Q 018283          275 PLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       275 ~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                                        ...+...+|+...+....         -+...++.+||+++.|++++++.+.+..
T Consensus       115 ------------------~~~~~~~~~l~~~~~~~g---------~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          115 ------------------VKYPKLLRWMRRMAEELG---------LCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             ------------------CCHHHHHHHHHHHHHTTT---------CCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             ------------------cCHHHHHHHHHHHHHHcC---------CCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence                              223455566665554321         1123577899999999999999887643

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.24  E-value=4.3e-06  Score=80.64  Aligned_cols=38  Identities=8%  Similarity=0.163  Sum_probs=26.3

Q ss_pred             ceEEEEEecCCCchhhh-------hHhhhhcCCcEEEEEEEcccc
Q 018283          186 GEVYRLFDVGGQRNERR-------KWIHLFEGVSAVIFCAAISEY  223 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r~-------~w~~y~~~~~~iIfv~dls~~  223 (358)
                      ...+.+|||+|+...+.       .|..++++++++++|+|.++-
T Consensus        85 ~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A           85 PAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             CCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             ccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            34689999999987654       688899999999999998753

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.18  E-value=5e-06  Score=78.74  Aligned_cols=35  Identities=9%  Similarity=-0.017  Sum_probs=26.1

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEcc
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAIS  221 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls  221 (358)
                      ..+..+.++||+|...-.   ......++.+++|+|.+
T Consensus       145 ~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~  179 (337)
T 2qm8_A          145 AAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPG  179 (337)
T ss_dssp             HTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSC
T ss_pred             cCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCC
Confidence            356789999999975321   23457899999999864

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.12  E-value=9.8e-06  Score=84.22  Aligned_cols=71  Identities=8%  Similarity=0.047  Sum_probs=55.0

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      .+++.+++.||+|+-.|..--..-++-+|++|+|+|..         .  .-...+...|+.....    +.|+++|.||
T Consensus        82 ~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDav---------e--GV~~qT~~v~~~a~~~----~lp~i~~iNK  146 (709)
T 4fn5_A           82 YDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGT---------S--GVEPQSETVWRQANKY----GVPRIVYVNK  146 (709)
T ss_dssp             SCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETT---------T--CSCHHHHHHHHHHHHH----TCCEEEEEEC
T ss_pred             CCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECC---------C--CCchhHHHHHHHHHHc----CCCeEEEEcc
Confidence            45789999999999999888888888999999999964         1  2223445566666543    6899999999


Q ss_pred             CCchhh
Q 018283          264 FDIFEK  269 (358)
Q Consensus       264 ~Dl~~e  269 (358)
                      +|....
T Consensus       147 iDr~~a  152 (709)
T 4fn5_A          147 MDRQGA  152 (709)
T ss_dssp             SSSTTC
T ss_pred             ccccCc
Confidence            998643

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.01  E-value=1.7e-05  Score=82.39  Aligned_cols=70  Identities=10%  Similarity=0.122  Sum_probs=43.8

Q ss_pred             ceEEEEEecCCCch-------------hhhhHhhhh-cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCC
Q 018283          186 GEVYRLFDVGGQRN-------------ERRKWIHLF-EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  251 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~-------------~r~~w~~y~-~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~  251 (358)
                      ...+.++||+|-..             .+.....|. ..++.+++|+|.+.         ... -.+.+.++..+..   
T Consensus       149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~---------~~~-~~d~l~ll~~L~~---  215 (772)
T 3zvr_A          149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS---------DLA-NSDALKIAKEVDP---  215 (772)
T ss_dssp             CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTS---------CSS-SCHHHHHHHHHCT---
T ss_pred             CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCC---------Ccc-hhHHHHHHHHHHh---
Confidence            34689999999533             333445565 47889999999742         100 0122234444422   


Q ss_pred             CCCCcEEEEeeCCCchhh
Q 018283          252 FEKTSFMLFLNKFDIFEK  269 (358)
Q Consensus       252 ~~~~~iilv~NK~Dl~~e  269 (358)
                       .+.|+++|+||.|+...
T Consensus       216 -~g~pvIlVlNKiDlv~~  232 (772)
T 3zvr_A          216 -QGQRTIGVITKLDLMDE  232 (772)
T ss_dssp             -TCSSEEEEEECTTSSCT
T ss_pred             -cCCCEEEEEeCcccCCc
Confidence             26899999999999743

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=97.63  E-value=9.5e-05  Score=70.83  Aligned_cols=74  Identities=11%  Similarity=0.120  Sum_probs=44.0

Q ss_pred             cccceEEEEEecCCCchh-------hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNE-------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT  255 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~-------r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~  255 (358)
                      ...+..+++.||+|--.-       -.......+++|++++|+|.++         ...........++..  ...+.+.
T Consensus       115 ~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~---------p~~~~~~i~~EL~~~--~~~l~~k  183 (376)
T 4a9a_A          115 RYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNK---------PLHHKQIIEKELEGV--GIRLNKT  183 (376)
T ss_dssp             EETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTS---------HHHHHHHHHHHHHHT--TEEETCC
T ss_pred             EeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCc---------cHHHHHHHHHHHHHh--hHhhccC
Confidence            345678999999996322       1223345678999999999852         111111111222221  2234467


Q ss_pred             cEEEEeeCCCch
Q 018283          256 SFMLFLNKFDIF  267 (358)
Q Consensus       256 ~iilv~NK~Dl~  267 (358)
                      |.++++||.|..
T Consensus       184 ~~~i~~nK~d~~  195 (376)
T 4a9a_A          184 PPDILIKKKEKG  195 (376)
T ss_dssp             CCCEEEEECSSS
T ss_pred             ChhhhhhHhhhh
Confidence            888999999963

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.56  E-value=0.00016  Score=69.58  Aligned_cols=36  Identities=14%  Similarity=0.264  Sum_probs=29.1

Q ss_pred             eEEEEEecCCCc-------hhhhhHhhhhcCCcEEEEEEEccc
Q 018283          187 EVYRLFDVGGQR-------NERRKWIHLFEGVSAVIFCAAISE  222 (358)
Q Consensus       187 ~~l~i~D~~Gq~-------~~r~~w~~y~~~~~~iIfv~dls~  222 (358)
                      ..+.+||++|..       .....+..++++++++++|+|+++
T Consensus        85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            468999999953       345577888899999999999875

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.33  E-value=0.00034  Score=64.34  Aligned_cols=100  Identities=14%  Similarity=0.156  Sum_probs=63.1

Q ss_pred             cCCC-chhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhc
Q 018283          194 VGGQ-RNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVL  272 (358)
Q Consensus       194 ~~Gq-~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~  272 (358)
                      .+|+ ...++........+|+||+|+|..+-.      ...+      ..+..++     .+.|+++++||+||....  
T Consensus         6 ~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~------~~~~------~~l~~~l-----~~kp~ilVlNK~DL~~~~--   66 (282)
T 1puj_A            6 FPGHMAKARREVTEKLKLIDIVYELVDARIPM------SSRN------PMIEDIL-----KNKPRIMLLNKADKADAA--   66 (282)
T ss_dssp             ---CTTHHHHHHHHHGGGCSEEEEEEETTSTT------TTSC------HHHHHHC-----SSSCEEEEEECGGGSCHH--
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEEeCCCCC------ccCC------HHHHHHH-----CCCCEEEEEECcccCCHH--
Confidence            4555 466777777899999999999985311      1111      1122332     468999999999995421  


Q ss_pred             cCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHH
Q 018283          273 KVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       273 ~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~  349 (358)
                                           ..+...+|+    .+            ..+.++.+||+++.+++++++.+.+.+-.
T Consensus        67 ---------------------~~~~~~~~~----~~------------~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           67 ---------------------VTQQWKEHF----EN------------QGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             ---------------------HHHHHHHHH----HT------------TTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHH----Hh------------cCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence                                 122333332    11            11346779999999999999988877653

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.06  E-value=0.0018  Score=62.95  Aligned_cols=20  Identities=30%  Similarity=0.491  Sum_probs=18.0

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      +++|+|++|||||||++.+-
T Consensus        44 ~vaLvG~nGaGKSTLln~L~   63 (427)
T 2qag_B           44 NILCVGETGLGKSTLMDTLF   63 (427)
T ss_dssp             EEEEECSTTSSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            49999999999999998874

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=96.95  E-value=0.0003  Score=67.27  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=20.2

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ...+++++|.+++||||+++.+.
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~  183 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRII  183 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHH
Confidence            34689999999999999999874

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.69  E-value=0.00094  Score=65.79  Aligned_cols=34  Identities=6%  Similarity=0.112  Sum_probs=26.7

Q ss_pred             EEEEEecCCC--chhhhhH--------hhhhcCCcEEEEEEEcc
Q 018283          188 VYRLFDVGGQ--RNERRKW--------IHLFEGVSAVIFCAAIS  221 (358)
Q Consensus       188 ~l~i~D~~Gq--~~~r~~w--------~~y~~~~~~iIfv~dls  221 (358)
                      ...+||.+|+  .+.|..|        ..|+.++.+.++|+|.+
T Consensus        88 ~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~t  131 (469)
T 1bif_A           88 SFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDAT  131 (469)
T ss_dssp             CGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred             cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            3467899999  4557777        77888888989999964

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.67  E-value=0.0066  Score=60.26  Aligned_cols=65  Identities=9%  Similarity=0.106  Sum_probs=39.0

Q ss_pred             cceEEEEEecCCCchhh-hhHhhh-----hcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcE-
Q 018283          185 SGEVYRLFDVGGQRNER-RKWIHL-----FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF-  257 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r-~~w~~y-----~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~i-  257 (358)
                      .+..+.|+||+|..... ..+...     .-.++.++||+|.+.         ..+.+ .....|...        .|+ 
T Consensus       182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~---------g~~~~-~~a~~~~~~--------~~i~  243 (504)
T 2j37_W          182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI---------GQACE-AQAKAFKDK--------VDVA  243 (504)
T ss_dssp             TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC---------CTTHH-HHHHHHHHH--------HCCC
T ss_pred             CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccc---------cccHH-HHHHHHHhh--------cCce
Confidence            56789999999986432 223211     237899999999742         12211 222223221        464 


Q ss_pred             EEEeeCCCch
Q 018283          258 MLFLNKFDIF  267 (358)
Q Consensus       258 ilv~NK~Dl~  267 (358)
                      .+|+||.|..
T Consensus       244 gvVlNK~D~~  253 (504)
T 2j37_W          244 SVIVTKLDGH  253 (504)
T ss_dssp             CEEEECTTSC
T ss_pred             EEEEeCCccc
Confidence            7889999975

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=96.55  E-value=0.0013  Score=62.73  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=20.2

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ...+++++|.+++||||+++.+.
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~  181 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMI  181 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHH
Confidence            34689999999999999999874

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.14  E-value=0.029  Score=54.58  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=18.5

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      ...|+++|.+||||||++..+.
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA  121 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLA  121 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHH
Confidence            3568899999999999987763

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.01  E-value=0.01  Score=60.36  Aligned_cols=24  Identities=21%  Similarity=0.430  Sum_probs=20.5

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -.+.|+|++||||||+++.+..+.
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            369999999999999999886544

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.99  E-value=0.0038  Score=53.93  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=20.4

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -.++|+|++||||||+++.+..++
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            478999999999999999885444

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.98  E-value=0.0038  Score=52.91  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=19.8

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -++|+|++||||||+++.+...+
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            57899999999999999986444

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.83  E-value=0.0049  Score=52.47  Aligned_cols=21  Identities=33%  Similarity=0.575  Sum_probs=18.7

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      .+++|+|++||||||+++.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~   21 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIV   21 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999999874

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.81  E-value=0.13  Score=49.98  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=17.9

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      .-|+++|.+||||||++..+.
T Consensus        98 ~vI~lvG~~GsGKTTt~~kLA  118 (433)
T 3kl4_A           98 FIIMLVGVQGSGKTTTAGKLA  118 (433)
T ss_dssp             EEEEECCCTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            457888999999999988874

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.79  E-value=0.14  Score=46.98  Aligned_cols=20  Identities=25%  Similarity=0.498  Sum_probs=17.6

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -++++|.+|+||||++..+.
T Consensus       100 vi~i~G~~G~GKTT~~~~la  119 (297)
T 1j8m_F          100 VIMLVGVQGTGKTTTAGKLA  119 (297)
T ss_dssp             EEEEECSSCSSTTHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57788999999999998875

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=95.68  E-value=0.007  Score=50.39  Aligned_cols=27  Identities=30%  Similarity=0.443  Sum_probs=22.4

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcCCC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQTG   74 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~~~   74 (358)
                      ..|+|+|++||||||+++.+...++..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~~~   31 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLNME   31 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            468999999999999999987655443

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.61  E-value=0.0055  Score=51.94  Aligned_cols=23  Identities=48%  Similarity=0.504  Sum_probs=19.8

Q ss_pred             ccEEEecCCCCChhHHHHHHHHh
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l   70 (358)
                      -.++|+|++||||||+++.+...
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35889999999999999998644

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.58  E-value=0.0053  Score=51.63  Aligned_cols=18  Identities=44%  Similarity=0.661  Sum_probs=16.5

Q ss_pred             cEEEecCCCCChhHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQ   66 (358)
Q Consensus        49 killlG~~~sGKSTi~kq   66 (358)
                      -++|+|++||||||+++.
T Consensus        11 i~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EEEEECCTTSCHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHH
Confidence            478999999999999996

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.56  E-value=0.0069  Score=51.91  Aligned_cols=24  Identities=8%  Similarity=0.329  Sum_probs=19.8

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      --+.|+|++||||||+++.+..++
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            357899999999999999885443

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.54  E-value=0.086  Score=51.20  Aligned_cols=21  Identities=33%  Similarity=0.512  Sum_probs=18.3

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      ..|+++|.+||||||++..+-
T Consensus       100 ~vI~ivG~~GvGKTTla~~La  120 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLA  120 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            468899999999999988773

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.54  E-value=0.0073  Score=51.88  Aligned_cols=21  Identities=29%  Similarity=0.521  Sum_probs=18.3

Q ss_pred             EEEecCCCCChhHHHHHHHHh
Q 018283           50 LLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l   70 (358)
                      |+|+|++|||||||++.+..-
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999987533

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.54  E-value=0.0081  Score=52.13  Aligned_cols=25  Identities=20%  Similarity=0.182  Sum_probs=20.5

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .-|+|+|++||||||+++.+...+.
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3578899999999999999865543

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.45  E-value=0.0075  Score=52.28  Aligned_cols=27  Identities=33%  Similarity=0.305  Sum_probs=22.0

Q ss_pred             hccccEEEecCCCCChhHHHHHHHHhc
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      +....|.|+|++|||||||++.+..++
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            345688999999999999999885443

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.38  E-value=0.0066  Score=54.99  Aligned_cols=92  Identities=21%  Similarity=0.182  Sum_probs=53.8

Q ss_pred             CCC-chhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhcc
Q 018283          195 GGQ-RNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLK  273 (358)
Q Consensus       195 ~Gq-~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~  273 (358)
                      +|| ...++.......++|.+|.|+|..+-.      ...+..      +.      .. ++|.++++||+||....   
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~------~~~~~~------l~------ll-~k~~iivlNK~DL~~~~---   62 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPF------ATSAYG------VD------FS-RKETIILLNKVDIADEK---   62 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTT------TTSCTT------SC------CT-TSEEEEEEECGGGSCHH---
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCC------cCcChH------HH------hc-CCCcEEEEECccCCCHH---
Confidence            344 334455666789999999999985311      111110      11      11 68999999999995421   


Q ss_pred             CCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283          274 VPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       274 ~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~  345 (358)
                                          ..++..+|    |...          .  +.+ .+||+++.+++.+++.+.+
T Consensus        63 --------------------~~~~~~~~----~~~~----------g--~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           63 --------------------TTKKWVEF----FKKQ----------G--KRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             --------------------HHHHHHHH----HHHT----------T--CCE-EECCTTSCHHHHHHHHCCC
T ss_pred             --------------------HHHHHHHH----HHHc----------C--CeE-EEECCCCcCHHHHHHHHHH
Confidence                                11222333    2211          1  224 7899999999998887643

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.38  E-value=0.009  Score=49.97  Aligned_cols=25  Identities=24%  Similarity=0.468  Sum_probs=20.6

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcCC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      -|+|.|.+||||||+.+.+...++.
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~l~~   29 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSVLPE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCC
Confidence            4789999999999999998654433

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.36  E-value=0.0088  Score=52.41  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=21.4

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhc
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ..-.+.|+|++||||||+++.+..++
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34478999999999999999886444

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.36  E-value=0.0095  Score=52.45  Aligned_cols=27  Identities=11%  Similarity=0.147  Sum_probs=21.6

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhcC
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ..--++|+|++|||||||++.+..+..
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            444688999999999999998865443

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.33  E-value=0.0093  Score=51.62  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=20.3

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .--+.|+|++||||||+++.+..++
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3357899999999999999885444

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.32  E-value=0.02  Score=50.92  Aligned_cols=28  Identities=32%  Similarity=0.312  Sum_probs=23.1

Q ss_pred             hhccccEEEecCCCCChhHHHHHHHHhc
Q 018283           44 EKHIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        44 ~~~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .++...|+|.|++||||||+.+.+..-+
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4466789999999999999999985333

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.18  E-value=0.011  Score=48.83  Aligned_cols=23  Identities=22%  Similarity=0.196  Sum_probs=19.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .|+|.|.+||||||+.+.+...+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999985433

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.18  E-value=0.0099  Score=54.09  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=20.6

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      +.+.|+|++|||||||++.+..+.
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999886444

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.18  E-value=0.011  Score=51.09  Aligned_cols=26  Identities=19%  Similarity=0.217  Sum_probs=21.4

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhcC
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ...|.|+|++||||||+++.+..+++
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34688999999999999999865443

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.17  E-value=0.012  Score=51.31  Aligned_cols=26  Identities=23%  Similarity=0.331  Sum_probs=21.7

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhcC
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ...|.|+|++||||||+++.+...++
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g   30 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQ   30 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999865443

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=95.16  E-value=0.011  Score=51.14  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=19.6

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -|+|+|++|||||||++.+...+
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            57889999999999999886444

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.15  E-value=0.01  Score=49.00  Aligned_cols=19  Identities=37%  Similarity=0.480  Sum_probs=17.7

Q ss_pred             cEEEecCCCCChhHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~   67 (358)
                      -|+|.|++||||||+.+.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999998

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.11  E-value=0.011  Score=50.60  Aligned_cols=25  Identities=28%  Similarity=0.151  Sum_probs=20.7

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ...|+|+|++||||||+++.+...+
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3468899999999999999886444

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.10  E-value=0.01  Score=52.85  Aligned_cols=24  Identities=33%  Similarity=0.432  Sum_probs=20.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++|||||||++-+..+..
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            578999999999999998865543

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.10  E-value=0.011  Score=50.21  Aligned_cols=20  Identities=30%  Similarity=0.468  Sum_probs=17.9

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -++|+|++||||||+++.+.
T Consensus         4 ii~l~G~~GaGKSTl~~~L~   23 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLA   23 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHh
Confidence            46899999999999999885

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.00  E-value=0.015  Score=48.46  Aligned_cols=26  Identities=19%  Similarity=0.169  Sum_probs=20.8

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhc
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ..-.+.|+|+.|||||||+|-+..+.
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            33468899999999999999885443

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=94.99  E-value=0.012  Score=50.83  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=19.9

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ...-|+|+|++||||||+.+.+.
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~   33 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVL   33 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHH
Confidence            44568999999999999999985

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.95  E-value=0.014  Score=49.14  Aligned_cols=24  Identities=25%  Similarity=0.320  Sum_probs=20.5

Q ss_pred             ccccEEEecCCCCChhHHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~   69 (358)
                      +...|+|.|.+||||||+.+.+..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999853

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=94.95  E-value=0.015  Score=50.42  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=20.2

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ++|+|.|++||||||+.+.+.--+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            379999999999999999984333

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=94.94  E-value=0.013  Score=48.95  Aligned_cols=21  Identities=33%  Similarity=0.407  Sum_probs=18.5

Q ss_pred             cEEEecCCCCChhHHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~   69 (358)
                      -|+|.|.+||||||+.+.+..
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            478999999999999999853

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=94.91  E-value=0.011  Score=52.89  Aligned_cols=28  Identities=36%  Similarity=0.426  Sum_probs=22.3

Q ss_pred             hccccEEEecCCCCChhHHHHHHHHhcC
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .....|+|+|.+||||||+.+.+...++
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3445789999999999999999864443

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=94.91  E-value=0.015  Score=50.00  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=20.6

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ..-|+|+|++||||||+++.+...+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhh
Confidence            4468899999999999999985443

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=94.89  E-value=0.016  Score=50.20  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ++|+|.|++||||||+.+.+.--+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            379999999999999999985433

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=94.87  E-value=0.015  Score=49.93  Aligned_cols=29  Identities=24%  Similarity=0.360  Sum_probs=22.9

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhcCCCC
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLFQTGF   75 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~~~~f   75 (358)
                      ...|+|+|++||||||+.+.+...++-.|
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~   53 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARKLNVPF   53 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence            44789999999999999999865544433

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.85  E-value=0.013  Score=55.48  Aligned_cols=27  Identities=30%  Similarity=0.584  Sum_probs=23.5

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhcCC
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      .-++.|+|++|||||||++.+..++.+
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            458999999999999999999777654

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=94.85  E-value=0.021  Score=48.93  Aligned_cols=23  Identities=26%  Similarity=0.254  Sum_probs=19.7

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ...-|+|+|++||||||+++.+.
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La   46 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALN   46 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34568899999999999999885

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.84  E-value=0.013  Score=51.77  Aligned_cols=24  Identities=38%  Similarity=0.461  Sum_probs=20.1

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++|||||||+|-+..+..
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            578999999999999998865543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=94.83  E-value=0.016  Score=48.31  Aligned_cols=23  Identities=26%  Similarity=0.444  Sum_probs=19.5

Q ss_pred             ccEEEecCCCCChhHHHHHHHHh
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l   70 (358)
                      ..|+|+|++||||||+++.+...
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            36889999999999999988543

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=94.77  E-value=0.015  Score=51.86  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=20.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++|||||||+|-+..+..
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999998865543

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=94.77  E-value=0.017  Score=49.57  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=20.6

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ...|+|.|.+||||||+.+.+...+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468999999999999999985433

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=94.77  E-value=0.017  Score=49.13  Aligned_cols=21  Identities=38%  Similarity=0.521  Sum_probs=19.0

Q ss_pred             cEEEecCCCCChhHHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~   69 (358)
                      .|+|.|.+||||||+.+.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999999864

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.76  E-value=0.039  Score=44.76  Aligned_cols=37  Identities=16%  Similarity=0.124  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHH
Q 018283           32 EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        32 ~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~   68 (358)
                      .+.+..+.-+.......-|++.|++|+|||++++.+.
T Consensus         9 ~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~   45 (145)
T 3n70_A            9 WINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLH   45 (145)
T ss_dssp             HHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHH
Confidence            3444443333334566789999999999999998763

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=94.73  E-value=0.015  Score=51.77  Aligned_cols=22  Identities=32%  Similarity=0.600  Sum_probs=19.6

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      ...|+|+|++||||||+++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999985

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.70  E-value=0.015  Score=50.53  Aligned_cols=21  Identities=19%  Similarity=0.271  Sum_probs=18.9

Q ss_pred             cEEEecCCCCChhHHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~   69 (358)
                      -++|+|++||||||+++++..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999854

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=94.70  E-value=0.015  Score=52.17  Aligned_cols=24  Identities=33%  Similarity=0.477  Sum_probs=20.6

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++|||||||+|.+..++.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            688999999999999998865553

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=94.68  E-value=0.013  Score=51.49  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=18.3

Q ss_pred             EEEecCCCCChhHHHHHHHHhc
Q 018283           50 LLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~   71 (358)
                      |+|+|++||||+|..+.+..-|
T Consensus        32 I~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5578999999999999886444

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=94.68  E-value=0.019  Score=50.01  Aligned_cols=25  Identities=28%  Similarity=0.278  Sum_probs=20.9

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      +.|+|+|++||||+|..+.+..-|+
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Confidence            4689999999999999999864443

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=94.67  E-value=0.015  Score=53.09  Aligned_cols=24  Identities=29%  Similarity=0.535  Sum_probs=20.5

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++|||||||+|.+..+..
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            578999999999999998865553

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=94.60  E-value=0.021  Score=49.70  Aligned_cols=26  Identities=23%  Similarity=0.402  Sum_probs=21.8

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhc
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      +...|+|+|.+||||||+.+.+...+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45689999999999999999985443

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=94.60  E-value=0.018  Score=48.55  Aligned_cols=21  Identities=29%  Similarity=0.373  Sum_probs=18.7

Q ss_pred             cEEEecCCCCChhHHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~   69 (358)
                      .|+|.|.+||||||+.+.+..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999853

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=94.59  E-value=0.016  Score=52.44  Aligned_cols=24  Identities=33%  Similarity=0.560  Sum_probs=20.2

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|++|||||||+|.+..+..
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            578999999999999998865543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=94.59  E-value=0.016  Score=50.76  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=19.8

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+.|+|++|||||||+|-+..+.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999886444

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.58  E-value=0.016  Score=51.60  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=20.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++|||||||+|-+..+..
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999998865543

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=94.56  E-value=0.017  Score=51.64  Aligned_cols=24  Identities=33%  Similarity=0.595  Sum_probs=20.6

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++|||||||++-+..++.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            688999999999999998865553

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=94.51  E-value=0.017  Score=52.01  Aligned_cols=24  Identities=33%  Similarity=0.530  Sum_probs=20.3

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++|||||||+|-+..+..
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999998865543

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=94.49  E-value=0.019  Score=49.23  Aligned_cols=21  Identities=29%  Similarity=0.344  Sum_probs=19.4

Q ss_pred             cEEEecCCCCChhHHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~   69 (358)
                      +|.|+|..||||||+++.+..
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999876

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=94.47  E-value=0.021  Score=48.77  Aligned_cols=25  Identities=24%  Similarity=0.197  Sum_probs=21.0

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHh
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l   70 (358)
                      +...|+|.|.+||||||+.+.+...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998643

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=94.47  E-value=0.025  Score=48.02  Aligned_cols=26  Identities=19%  Similarity=0.388  Sum_probs=21.6

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhc
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ....|+|.|.+||||||+.+.+...+
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            44579999999999999999986444

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=94.46  E-value=0.017  Score=52.46  Aligned_cols=24  Identities=21%  Similarity=0.466  Sum_probs=20.5

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++|||||||+|-+..+..
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            578999999999999998865553

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=94.46  E-value=0.022  Score=47.89  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=20.7

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ..|+|+|.+||||||+.+.+...++
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3689999999999999999854443

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=94.46  E-value=0.018  Score=50.91  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=20.3

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++|||||||+|-+..++.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            688999999999999998865543

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=94.45  E-value=0.018  Score=52.37  Aligned_cols=24  Identities=38%  Similarity=0.510  Sum_probs=20.6

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++|||||||+|-+..++.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            688999999999999998865554

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=94.44  E-value=0.019  Score=48.48  Aligned_cols=24  Identities=17%  Similarity=0.261  Sum_probs=20.1

Q ss_pred             cccEEEecCCCCChhHHHHHHHHh
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l   70 (358)
                      ..-|+|.|.+||||||+.+.+..-
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999998543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=94.43  E-value=0.019  Score=51.07  Aligned_cols=23  Identities=17%  Similarity=0.306  Sum_probs=19.7

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+.|+|++|||||||+|-+..++
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999885443

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.43  E-value=0.02  Score=48.23  Aligned_cols=22  Identities=14%  Similarity=0.108  Sum_probs=19.5

Q ss_pred             ccEEEecCCCCChhHHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~   69 (358)
                      ..|+|.|.+||||||+.+.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999854

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=94.42  E-value=0.023  Score=49.26  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=20.4

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ++|+|.|.+||||||+.+.+..-+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999986433

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=94.40  E-value=0.026  Score=47.73  Aligned_cols=27  Identities=26%  Similarity=0.415  Sum_probs=22.1

Q ss_pred             hccccEEEecCCCCChhHHHHHHHHhc
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+...|+|.|.+||||||+.+.+...+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            445679999999999999999986433

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=94.40  E-value=0.019  Score=52.04  Aligned_cols=24  Identities=33%  Similarity=0.578  Sum_probs=20.3

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++|||||||+|-+..+..
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Confidence            578999999999999998865543

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.34  E-value=0.026  Score=46.61  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=20.0

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      +|+|.|.+||||||+.+.+...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999986533

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.34  E-value=0.02  Score=51.68  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=20.2

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++|||||||+|-+..+..
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            578999999999999998865543

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=94.33  E-value=0.025  Score=47.22  Aligned_cols=24  Identities=25%  Similarity=0.405  Sum_probs=20.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      +|+|+|.+||||||+.+.+...++
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            689999999999999999854443

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=94.33  E-value=0.02  Score=51.42  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=20.3

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++|||||||+|-+..+..
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            578999999999999998865543

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=94.33  E-value=0.019  Score=50.07  Aligned_cols=23  Identities=22%  Similarity=0.235  Sum_probs=19.4

Q ss_pred             ccEEEecCCCCChhHHHHHHHHh
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l   70 (358)
                      -.+.|+|++|||||||++.+..+
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36889999999999999987533

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=94.24  E-value=0.022  Score=52.96  Aligned_cols=27  Identities=22%  Similarity=0.185  Sum_probs=21.7

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhcC
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ...-|.|+|++||||||+++.+..+..
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            344688999999999999999865543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=94.24  E-value=0.06  Score=49.84  Aligned_cols=52  Identities=10%  Similarity=0.100  Sum_probs=31.0

Q ss_pred             HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchh
Q 018283          204 WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       204 w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~  268 (358)
                      +..-..++|.+++|+|..+        +..+. .. ++-+-....   ..++|.+||+||+||..
T Consensus        80 ~R~~~anvD~v~~V~~~~~--------p~~~~-~~-i~r~L~~~~---~~~~~~vivlnK~DL~~  131 (307)
T 1t9h_A           80 IRPPICNVDQAVLVFSAVQ--------PSFST-AL-LDRFLVLVE---ANDIQPIICITKMDLIE  131 (307)
T ss_dssp             TTTTEECCCEEEEEEESTT--------TTCCH-HH-HHHHHHHHH---TTTCEEEEEEECGGGCC
T ss_pred             hHHHHHhCCEEEEEEeCCC--------CCCCH-HH-HHHHHHHHH---HCCCCEEEEEECCccCc
Confidence            3345789999999999732        22221 11 111111111   13678999999999953

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=94.23  E-value=0.024  Score=51.19  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=19.4

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ..-.++|+|++||||||+++.+.
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~   46 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMI   46 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHH
Confidence            33368999999999999999874

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=94.22  E-value=0.021  Score=47.98  Aligned_cols=22  Identities=18%  Similarity=0.208  Sum_probs=19.1

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      .-.++|+|++|+||||+++.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~   59 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATL   59 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3468999999999999999874

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=94.18  E-value=0.022  Score=51.25  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=20.2

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++|||||||+|.+..+..
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999998865543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=94.17  E-value=0.023  Score=51.53  Aligned_cols=24  Identities=38%  Similarity=0.505  Sum_probs=20.3

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++|||||||+|-+..+..
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            578999999999999998865543

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=94.16  E-value=0.023  Score=50.90  Aligned_cols=22  Identities=32%  Similarity=0.259  Sum_probs=19.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHh
Q 018283           49 KLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l   70 (358)
                      .+.|+|++|||||||+|-+..+
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999988654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.13  E-value=0.016  Score=50.97  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=14.5

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      --+.|+|++||||||+++.+.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             CEEEEECSCC----CHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            357899999999999999875

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=94.12  E-value=0.023  Score=51.89  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++|||||||+|-+..+..
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            688999999999999998865543

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=94.11  E-value=0.028  Score=48.31  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=20.6

Q ss_pred             hccccEEEecCCCCChhHHHHHHH
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ++...|+|.|.+||||||+.+.+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~   30 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLV   30 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHH
Confidence            345679999999999999999885

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.11  E-value=0.028  Score=48.16  Aligned_cols=20  Identities=25%  Similarity=0.494  Sum_probs=18.2

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      ++.++|++||||||+++.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~   22 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKAS   22 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHH
Confidence            68999999999999999874

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=94.11  E-value=0.024  Score=51.22  Aligned_cols=23  Identities=39%  Similarity=0.475  Sum_probs=19.9

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+.|+|++|||||||+|-+..++
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68899999999999999886544

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.10  E-value=0.028  Score=48.28  Aligned_cols=23  Identities=30%  Similarity=0.273  Sum_probs=20.1

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      +...|+|.|.+||||||+.+.+.
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~   31 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLV   31 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHH
Confidence            34579999999999999999885

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.07  E-value=0.042  Score=50.84  Aligned_cols=27  Identities=19%  Similarity=0.351  Sum_probs=22.4

Q ss_pred             hccccEEEecCCCCChhHHHHHHHHhc
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ...-.++|+|++|||||||++.+..++
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            445579999999999999999986554

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=94.04  E-value=0.029  Score=47.43  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=20.6

Q ss_pred             cccEEEecCCCCChhHHHHHHHHh
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l   70 (358)
                      ...|+|+|.+||||||+.+.+...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999998643

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.04  E-value=0.017  Score=53.58  Aligned_cols=25  Identities=32%  Similarity=0.569  Sum_probs=21.3

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcCC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      .+.|+|++|||||||++.+..++.+
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~~p  106 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFYDI  106 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCchHHHHHHHHHcCCCC
Confidence            6889999999999999988666643

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=94.03  E-value=0.027  Score=47.21  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=20.1

Q ss_pred             cccEEEecCCCCChhHHHHHHHHh
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l   70 (358)
                      ...|++.|.+||||||+.+.+...
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHH
Confidence            346899999999999999988533

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.01  E-value=0.027  Score=53.39  Aligned_cols=24  Identities=29%  Similarity=0.499  Sum_probs=20.5

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|++||||||++|.+..+..
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            578999999999999998876553

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=94.00  E-value=0.034  Score=47.58  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=21.7

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhc
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ..+.|+|.|.+||||||+.+.+...+
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999986443

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=94.00  E-value=0.045  Score=50.26  Aligned_cols=27  Identities=30%  Similarity=0.155  Sum_probs=21.7

Q ss_pred             hccccEEEecCCCCChhHHHHHHHHhc
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+...|.|.|++||||||+++.+..++
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345678899999999999999885333

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=94.00  E-value=0.041  Score=47.23  Aligned_cols=23  Identities=30%  Similarity=0.297  Sum_probs=19.7

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ....|.|+|++||||||+++.+.
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~   43 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLS   43 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34568899999999999999875

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=94.00  E-value=0.03  Score=49.69  Aligned_cols=26  Identities=31%  Similarity=0.321  Sum_probs=21.5

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhc
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ....|.|+|+.||||||+++.+..++
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            44568999999999999999886543

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=94.00  E-value=0.034  Score=48.41  Aligned_cols=25  Identities=36%  Similarity=0.433  Sum_probs=21.0

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ...|+|+|.+||||||+.+.+..-+
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999985444

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=93.97  E-value=0.035  Score=46.54  Aligned_cols=24  Identities=33%  Similarity=0.389  Sum_probs=20.1

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -.+|+|+.|||||||++.+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            467899999999999999865544

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=93.97  E-value=0.028  Score=48.28  Aligned_cols=21  Identities=33%  Similarity=0.221  Sum_probs=19.1

Q ss_pred             cEEEecCCCCChhHHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~   69 (358)
                      .|.|+|+.||||||+.+.+..
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999875

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=93.95  E-value=0.035  Score=46.64  Aligned_cols=25  Identities=36%  Similarity=0.430  Sum_probs=20.9

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ..|+|.|.+||||||+.+.+...++
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            3699999999999999999865443

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=93.93  E-value=0.027  Score=51.03  Aligned_cols=22  Identities=27%  Similarity=0.295  Sum_probs=19.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHh
Q 018283           49 KLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l   70 (358)
                      .+.|+|++|||||||+|-+..+
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999988654

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=93.93  E-value=0.033  Score=47.60  Aligned_cols=22  Identities=27%  Similarity=0.219  Sum_probs=19.4

Q ss_pred             ccEEEecCCCCChhHHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~   69 (358)
                      ..|+|.|.+||||||+.+.+..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999853

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=93.89  E-value=0.034  Score=46.79  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=19.2

Q ss_pred             ccEEEecCCCCChhHHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~   69 (358)
                      ..|+|.|.+||||||+.+.+..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998853

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=93.89  E-value=0.036  Score=48.49  Aligned_cols=25  Identities=32%  Similarity=0.553  Sum_probs=21.0

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ...|+|.|.+||||||+.+.+..-+
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4579999999999999999986433

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=93.88  E-value=0.017  Score=48.73  Aligned_cols=23  Identities=26%  Similarity=0.576  Sum_probs=19.5

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+.|+|++||||||+++.+..++
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999885444

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=93.79  E-value=0.039  Score=50.50  Aligned_cols=25  Identities=28%  Similarity=0.189  Sum_probs=20.4

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ..-|+|.|++||||||+.+.+..-+
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3458899999999999999985433

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=93.76  E-value=0.035  Score=46.74  Aligned_cols=20  Identities=30%  Similarity=0.351  Sum_probs=18.2

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      .|+|.|.+||||||+.+.+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~   21 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLY   21 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999885

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=93.73  E-value=0.033  Score=52.70  Aligned_cols=24  Identities=42%  Similarity=0.479  Sum_probs=20.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|++||||||++|-+..+..
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            578999999999999998865553

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=93.73  E-value=0.033  Score=53.23  Aligned_cols=24  Identities=29%  Similarity=0.431  Sum_probs=20.7

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|++||||||++|-+..+..
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHHcCCC
Confidence            578999999999999999876654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=93.72  E-value=0.033  Score=52.78  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=20.6

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|++||||||++|-+..+..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHHCCCC
Confidence            578999999999999999876654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=93.72  E-value=0.21  Score=47.18  Aligned_cols=21  Identities=5%  Similarity=0.110  Sum_probs=16.2

Q ss_pred             EEEEEeeccChhhHHHHHHHH
Q 018283          323 FKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       323 ~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      +..+.+||+++.+++.+-..+
T Consensus       193 ~~v~~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          193 YRVLMVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             CCEEECBTTTTBTHHHHHHHH
T ss_pred             CcEEEEecCCCcCHHHHHHhc
Confidence            446789999999988876543

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=93.72  E-value=0.029  Score=50.73  Aligned_cols=23  Identities=39%  Similarity=0.726  Sum_probs=19.9

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+.|+|++|||||||+|-+..+.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999886544

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=93.72  E-value=0.042  Score=47.79  Aligned_cols=25  Identities=40%  Similarity=0.511  Sum_probs=21.1

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+.|+|+|.+||||||+.+.+..-+
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999985433

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=93.69  E-value=0.034  Score=52.82  Aligned_cols=24  Identities=33%  Similarity=0.499  Sum_probs=20.8

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|++|||||||+|.+..+..
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHhcCCC
Confidence            478999999999999999876654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=93.67  E-value=0.04  Score=45.58  Aligned_cols=23  Identities=17%  Similarity=0.416  Sum_probs=19.9

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .|+|.|.+||||||+.+.+...+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999986433

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=93.66  E-value=0.039  Score=48.23  Aligned_cols=22  Identities=32%  Similarity=0.397  Sum_probs=19.3

Q ss_pred             cEEEecCCCCChhHHHHHHHHh
Q 018283           49 KLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l   70 (358)
                      .|+|.|.+||||||+.+.+...
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=93.66  E-value=0.036  Score=47.64  Aligned_cols=24  Identities=25%  Similarity=0.293  Sum_probs=20.3

Q ss_pred             cccEEEecCCCCChhHHHHHHHHh
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l   70 (358)
                      ...|.|+|++||||||+++.+...
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            446889999999999999998643

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=93.65  E-value=0.034  Score=48.16  Aligned_cols=20  Identities=20%  Similarity=0.228  Sum_probs=17.9

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -++|+|++||||||+++++.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~   44 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFI   44 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            47889999999999999974

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=93.62  E-value=0.035  Score=52.67  Aligned_cols=24  Identities=38%  Similarity=0.567  Sum_probs=20.5

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|++||||||++|-+..+..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            578999999999999999876553

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=93.61  E-value=0.035  Score=52.86  Aligned_cols=24  Identities=38%  Similarity=0.487  Sum_probs=20.6

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|++||||||++|-+..+..
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            578999999999999999876653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=93.59  E-value=0.045  Score=46.74  Aligned_cols=25  Identities=20%  Similarity=0.412  Sum_probs=20.4

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ...|+|.|.+||||||+.+.+..-+
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3468899999999999999885433

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=93.57  E-value=0.035  Score=49.78  Aligned_cols=19  Identities=37%  Similarity=0.450  Sum_probs=17.3

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      |+|+|++||||||+.+++.
T Consensus         4 i~I~G~~GSGKSTla~~La   22 (253)
T 2ze6_A            4 HLIYGPTCSGKTDMAIQIA   22 (253)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            6889999999999999874

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=93.57  E-value=0.042  Score=46.15  Aligned_cols=22  Identities=32%  Similarity=0.323  Sum_probs=19.2

Q ss_pred             cEEEecCCCCChhHHHHHHHHh
Q 018283           49 KLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l   70 (358)
                      .|+|.|.+||||||+.+.+...
T Consensus         8 ~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            8 VVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998543

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=93.57  E-value=0.036  Score=48.07  Aligned_cols=23  Identities=30%  Similarity=0.199  Sum_probs=20.2

Q ss_pred             cccEEEecCCCCChhHHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~   69 (358)
                      .+-|+|.|.+||||||+.+.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999865

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=93.56  E-value=0.084  Score=48.69  Aligned_cols=27  Identities=22%  Similarity=0.239  Sum_probs=21.9

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhcC
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      +...|.|+|++||||||+++.+..++.
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            345688999999999999999865543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=93.54  E-value=0.037  Score=52.72  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=20.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|++||||||++|-+..+..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCC
Confidence            578999999999999999866553

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=93.54  E-value=0.039  Score=49.34  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=20.0

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ....|.|+|++||||||+++.+.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999999885

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=93.50  E-value=0.035  Score=50.43  Aligned_cols=23  Identities=26%  Similarity=0.288  Sum_probs=19.9

Q ss_pred             EEEecCCCCChhHHHHHHHHhcC
Q 018283           50 LLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ++|+|++|+||||+++.+....+
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTT
T ss_pred             EEEECCCCCcHHHHHHHHHHHcC
Confidence            99999999999999998864443

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=93.50  E-value=0.038  Score=46.60  Aligned_cols=23  Identities=30%  Similarity=0.306  Sum_probs=19.5

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      +..-|+|.|.+||||||+++.+.
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~   34 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLA   34 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHH
Confidence            34568899999999999999874

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=93.42  E-value=0.03  Score=51.41  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+.|+|++|||||||+|-+..+.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57899999999999999886544

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=93.39  E-value=0.035  Score=46.41  Aligned_cols=24  Identities=13%  Similarity=0.122  Sum_probs=16.1

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ..|+|.|.+||||||+.+.+...+
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            468899999999999999985433

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=93.35  E-value=0.04  Score=50.94  Aligned_cols=24  Identities=21%  Similarity=0.479  Sum_probs=20.1

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      --++++|++||||||+++.+..++
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHH
Confidence            468899999999999999886444

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=93.34  E-value=0.045  Score=51.06  Aligned_cols=24  Identities=29%  Similarity=0.317  Sum_probs=20.2

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      +-|.|+|++||||||+++.+..+.
T Consensus        93 ~iigI~GpsGSGKSTl~~~L~~ll  116 (321)
T 3tqc_A           93 YIIGIAGSVAVGKSTTSRVLKALL  116 (321)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            358899999999999999886554

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=93.34  E-value=0.065  Score=46.25  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=19.7

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ...-|+|.|.+||||||+.+.+.
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~   46 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELE   46 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
Confidence            44568899999999999999885

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=93.31  E-value=0.041  Score=49.41  Aligned_cols=21  Identities=33%  Similarity=0.417  Sum_probs=18.8

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      .-|+|.|.+||||||+.+.+.
T Consensus         5 ~lIvl~G~pGSGKSTla~~La   25 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLA   25 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHH
Confidence            468899999999999999985

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=93.30  E-value=0.044  Score=45.89  Aligned_cols=22  Identities=23%  Similarity=0.299  Sum_probs=19.2

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      ...|+|.|.+||||||+++.+.
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~   26 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALE   26 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3468899999999999999885

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=93.27  E-value=0.03  Score=52.81  Aligned_cols=24  Identities=21%  Similarity=0.373  Sum_probs=20.7

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|++||||||++|-+..+..
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Confidence            578999999999999999876654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=93.26  E-value=0.043  Score=47.21  Aligned_cols=20  Identities=30%  Similarity=0.253  Sum_probs=18.2

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -++|+|++|||||||++++.
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~   41 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTG   41 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999984

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=93.24  E-value=0.059  Score=44.65  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=18.8

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      .--++|.|++|+|||++++.+.
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~   64 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLA   64 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHH
Confidence            3468999999999999998873

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=93.20  E-value=0.021  Score=49.14  Aligned_cols=20  Identities=20%  Similarity=0.454  Sum_probs=17.8

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -|++.|.+||||||+++.+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~   21 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLS   21 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            47899999999999999874

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=93.19  E-value=0.044  Score=46.55  Aligned_cols=25  Identities=28%  Similarity=0.248  Sum_probs=21.4

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHh
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l   70 (358)
                      +...|.|.|..||||||+.+.+...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3457899999999999999998755

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=93.17  E-value=0.054  Score=44.75  Aligned_cols=24  Identities=33%  Similarity=0.564  Sum_probs=20.0

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -|+|.|..||||||+.+.+...++
T Consensus         9 ~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999865333

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=93.17  E-value=0.094  Score=50.59  Aligned_cols=27  Identities=19%  Similarity=0.313  Sum_probs=21.8

Q ss_pred             hccccEEEecCCCCChhHHHHHHHHhc
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .....+.|+|++||||||+++.+..+.
T Consensus        67 ~~~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           67 SSVLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence            344578999999999999999886443

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=93.15  E-value=0.064  Score=43.37  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=19.7

Q ss_pred             hccccEEEecCCCCChhHHHHHH
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~   67 (358)
                      .....|++.|++|+|||++++.+
T Consensus        25 ~~~~~vll~G~~GtGKt~lA~~i   47 (143)
T 3co5_A           25 KRTSPVFLTGEAGSPFETVARYF   47 (143)
T ss_dssp             TCSSCEEEEEETTCCHHHHHGGG
T ss_pred             CCCCcEEEECCCCccHHHHHHHH
Confidence            45567999999999999998765

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=93.08  E-value=0.054  Score=48.10  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=19.6

Q ss_pred             EEEecCCCCChhHHHHHHHHhcC
Q 018283           50 LLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ++|+|++|+||||+++.+.....
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999998854433

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=93.03  E-value=0.05  Score=46.01  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=17.9

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      .-++++|.+||||||+++.+.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~   27 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLI   27 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            357889999999999998873

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=92.93  E-value=0.11  Score=48.32  Aligned_cols=24  Identities=29%  Similarity=0.365  Sum_probs=20.2

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -.++++|++|+||||+++.+....
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            468999999999999999885443

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=92.89  E-value=0.093  Score=49.62  Aligned_cols=28  Identities=21%  Similarity=0.332  Sum_probs=22.7

Q ss_pred             hccccEEEecCCCCChhHHHHHHHHhcC
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      +..-.++|+|++||||||+++.+..++.
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3455899999999999999998865443

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=92.85  E-value=0.066  Score=47.05  Aligned_cols=26  Identities=27%  Similarity=0.324  Sum_probs=21.7

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhc
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ....|+|+|.+||||||+.+.+..-+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            44689999999999999999986444

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=92.84  E-value=0.053  Score=47.43  Aligned_cols=22  Identities=18%  Similarity=0.326  Sum_probs=19.1

Q ss_pred             ccEEEecCCCCChhHHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~   69 (358)
                      --++|+|++||||||+++++..
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            3578999999999999999854

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=92.80  E-value=0.051  Score=50.78  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=21.6

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhcC
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ..-.++++|++||||||+++.+-.++.
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            344799999999999999998754443

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=92.78  E-value=0.052  Score=49.48  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.0

Q ss_pred             cEEEecCCCCChhHHHHHHHHh
Q 018283           49 KLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l   70 (358)
                      -++|+|++|+|||||++++...
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5789999999999999998533

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=92.76  E-value=0.032  Score=52.78  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=20.5

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|++||||||++|-+..+..
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            578999999999999998866553

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=92.74  E-value=0.11  Score=47.31  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=21.1

Q ss_pred             hccccEEEecCCCCChhHHHHHHH
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ...++++++|.+++||||+++.+.
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~  141 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLA  141 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCceEEEEecCCCchHHHHHHHh
Confidence            356789999999999999999874

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=92.70  E-value=0.05  Score=44.58  Aligned_cols=21  Identities=24%  Similarity=0.377  Sum_probs=18.2

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      --++|+|++|+||||+++.+.
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~   57 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWV   57 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            368899999999999998864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=92.66  E-value=0.063  Score=49.46  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=19.6

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .-+.++|++|||||||++.+. +.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hh
Confidence            357899999999999999986 44

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=92.62  E-value=0.056  Score=51.12  Aligned_cols=20  Identities=35%  Similarity=0.453  Sum_probs=18.2

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -++++|+.||||||+++.+-
T Consensus       125 ~i~I~GptGSGKTTlL~~l~  144 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAML  144 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78999999999999999873

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=92.61  E-value=0.061  Score=44.54  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=19.0

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      ...++|.|++|+||||+++.+.
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~   64 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLA   64 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHH
Confidence            4468999999999999998874

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=92.60  E-value=0.057  Score=48.44  Aligned_cols=27  Identities=26%  Similarity=0.241  Sum_probs=22.1

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhcCC
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      .-.|+|+|.+||||||+.+.+....+-
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~   74 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGY   74 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            447999999999999999998654443

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=92.59  E-value=0.056  Score=51.79  Aligned_cols=23  Identities=39%  Similarity=0.527  Sum_probs=19.8

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+.|+|++||||||+++-+..+.
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTCS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58899999999999999886543

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=92.57  E-value=0.042  Score=48.29  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=20.5

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHh
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l   70 (358)
                      +..-|.|.|++||||||+++.+...
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            3446889999999999999987544

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=92.53  E-value=0.066  Score=49.42  Aligned_cols=22  Identities=18%  Similarity=0.424  Sum_probs=18.9

Q ss_pred             cEEEecCCCCChhHHHHHHHHh
Q 018283           49 KLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l   70 (358)
                      -++|+|++||||||+++.+..+
T Consensus       102 vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A          102 VIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5789999999999999987543

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=92.49  E-value=0.076  Score=47.26  Aligned_cols=24  Identities=25%  Similarity=0.238  Sum_probs=20.5

Q ss_pred             ccccEEEecCCCCChhHHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~   69 (358)
                      +.+.|.|.|.+||||||+.+.+..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            445789999999999999998854

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=92.41  E-value=0.15  Score=49.97  Aligned_cols=27  Identities=11%  Similarity=0.351  Sum_probs=22.0

Q ss_pred             hhccccEEEecCCCCChhHHHHHHHHh
Q 018283           44 EKHIQKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        44 ~~~~~killlG~~~sGKSTi~kq~~~l   70 (358)
                      ....-.++|+|++|||||||+|-+..+
T Consensus       135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          135 NFEGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             SSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence            345568999999999999999987533

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=92.40  E-value=0.074  Score=47.99  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=19.7

Q ss_pred             EEEecCCCCChhHHHHHHHHhcC
Q 018283           50 LLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ++|+|++|+||||+++.+.....
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCcChHHHHHHHHHHHcC
Confidence            89999999999999998854443

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=92.39  E-value=0.062  Score=49.43  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=19.8

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      --+.++|++||||||+++.+..+.
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccc
Confidence            357899999999999999885443

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=92.36  E-value=0.082  Score=46.91  Aligned_cols=26  Identities=15%  Similarity=0.213  Sum_probs=21.1

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhc
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ..+.|++.|++||||||+.+.+...+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999885433

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=92.27  E-value=0.067  Score=48.37  Aligned_cols=20  Identities=30%  Similarity=0.351  Sum_probs=18.2

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -++|+|++|||||||++++.
T Consensus        32 i~~i~G~~GsGKTtl~~~l~   51 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLA   51 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            57899999999999999985

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=92.25  E-value=0.072  Score=50.63  Aligned_cols=22  Identities=32%  Similarity=0.440  Sum_probs=19.0

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      .-.++|+|++||||||+++.+-
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~  157 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMI  157 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3368999999999999999874

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=92.15  E-value=0.071  Score=48.56  Aligned_cols=21  Identities=33%  Similarity=0.407  Sum_probs=18.7

Q ss_pred             cEEEecCCCCChhHHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~   69 (358)
                      -|+|.|.+||||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            4 IILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999864

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=92.14  E-value=0.076  Score=45.19  Aligned_cols=19  Identities=32%  Similarity=0.466  Sum_probs=17.5

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      ++++|.++|||||+..|+-
T Consensus         2 ilV~Gg~~SGKS~~A~~la   20 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALI   20 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7899999999999999874

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=92.13  E-value=0.074  Score=47.96  Aligned_cols=21  Identities=38%  Similarity=0.765  Sum_probs=19.5

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      .+++++|.+++|||||++.+.
T Consensus       100 ~~v~~vG~~~vGKSslin~l~  120 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLK  120 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             hheEEeCCCCCCHHHHHHHHh
Confidence            699999999999999999875

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=92.07  E-value=0.081  Score=49.44  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=19.9

Q ss_pred             cccEEEecCCCCChhHHHHHHHHh
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l   70 (358)
                      ..-++++|++||||||+++.+..+
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag~  152 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLANW  152 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            446889999999999999987533

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=92.07  E-value=0.091  Score=45.06  Aligned_cols=27  Identities=26%  Similarity=0.292  Sum_probs=22.5

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhcC
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ..+.|.|.|..||||||+.+.+...++
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~lg   37 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKYG   37 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            456788999999999999999976543

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=92.01  E-value=0.093  Score=49.40  Aligned_cols=28  Identities=21%  Similarity=0.133  Sum_probs=23.3

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhcCC
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      +.-++.|+|++|+||||+++.+..+..+
T Consensus        70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           70 IGQRIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4558999999999999999998666543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=92.00  E-value=0.075  Score=50.29  Aligned_cols=21  Identities=19%  Similarity=0.406  Sum_probs=18.8

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      -.++|+|++|||||||++.+.
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~  236 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALL  236 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHh
Confidence            368999999999999999875

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=91.96  E-value=0.068  Score=49.58  Aligned_cols=22  Identities=32%  Similarity=0.342  Sum_probs=18.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHh
Q 018283           49 KLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l   70 (358)
                      -++|+|..||||||+++.+-..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEEecCCCCHHHHHHHHHhh
Confidence            4678899999999999987543

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=91.91  E-value=0.085  Score=48.00  Aligned_cols=23  Identities=35%  Similarity=0.430  Sum_probs=20.0

Q ss_pred             cccEEEecCCCCChhHHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~   69 (358)
                      .+.|+|.|.+||||||+.+.+..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999873

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=91.82  E-value=0.089  Score=44.27  Aligned_cols=20  Identities=25%  Similarity=0.383  Sum_probs=17.3

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -+.+.|.+||||||++..+.
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~   25 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWV   25 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47789999999999998863

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=91.82  E-value=0.1  Score=45.98  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=20.6

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHh
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l   70 (358)
                      +..-|++.|++||||||+++.+...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4456889999999999999988533

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=91.82  E-value=0.078  Score=53.47  Aligned_cols=26  Identities=31%  Similarity=0.489  Sum_probs=22.1

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcCC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      -++.++|++||||||++|-+..++.+
T Consensus       370 ~~~~ivG~sGsGKSTll~~l~g~~~p  395 (582)
T 3b5x_A          370 KTVALVGRSGSGKSTIANLFTRFYDV  395 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            36889999999999999998766643

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=91.82  E-value=0.076  Score=53.54  Aligned_cols=24  Identities=38%  Similarity=0.541  Sum_probs=21.0

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ++.++|++||||||+++-+..++.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhhccC
Confidence            688999999999999999866654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=91.79  E-value=0.18  Score=43.60  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=19.8

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ..-.++|.|++|+||||+++.+.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~   73 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAAC   73 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHH
Confidence            35579999999999999999873

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=91.76  E-value=0.095  Score=46.54  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=18.7

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      ..++|+|++|+||||+++.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la   66 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIA   66 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHH
Confidence            359999999999999999874

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=91.75  E-value=0.1  Score=50.79  Aligned_cols=27  Identities=19%  Similarity=0.241  Sum_probs=22.9

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhcC
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      +.-++.|+|++|||||||++.+..+..
T Consensus       156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          156 RGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            455899999999999999999866654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=91.66  E-value=0.092  Score=51.78  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=18.9

Q ss_pred             cEEEecCCCCChhHHHHHHHHh
Q 018283           49 KLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l   70 (358)
                      -++|+|.+||||||+++.+..+
T Consensus       295 VI~LVGpNGSGKTTLl~~LAgl  316 (503)
T 2yhs_A          295 VILMVGVNGVGKTTTIGKLARQ  316 (503)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCcccHHHHHHHHHHH
Confidence            5889999999999999987533

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=91.59  E-value=0.1  Score=50.38  Aligned_cols=22  Identities=32%  Similarity=0.229  Sum_probs=18.9

Q ss_pred             cEEEecCCCCChhHHHHHHHHh
Q 018283           49 KLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l   70 (358)
                      -++|+|+.||||||+++.+-.+
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999987433

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=91.59  E-value=0.11  Score=44.19  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=20.2

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .|.|.|..||||||+.+.+...++
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            578999999999999999865443

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=91.56  E-value=0.1  Score=51.31  Aligned_cols=24  Identities=25%  Similarity=0.230  Sum_probs=20.3

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|++||||||+++.+..+..
T Consensus        31 ~~~liG~nGsGKSTLl~~l~Gl~~   54 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVTALI   54 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEECCCCCcHHHHHHHHhcCCC
Confidence            578999999999999998865553

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=91.52  E-value=0.25  Score=45.57  Aligned_cols=40  Identities=20%  Similarity=0.315  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhcC
Q 018283           33 IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        33 id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      +...+..-.........|||.|++|+|||++++.+....+
T Consensus        41 l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~   80 (338)
T 3pfi_A           41 LNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS   80 (338)
T ss_dssp             HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            4444443322233445799999999999999998854433

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=91.50  E-value=0.1  Score=49.44  Aligned_cols=22  Identities=18%  Similarity=0.424  Sum_probs=18.9

Q ss_pred             cEEEecCCCCChhHHHHHHHHh
Q 018283           49 KLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l   70 (358)
                      -++|+|++||||||+++.+..+
T Consensus       159 vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          159 VIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCChHHHHHHHHHhh
Confidence            5889999999999999987543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=91.33  E-value=0.12  Score=42.20  Aligned_cols=20  Identities=35%  Similarity=0.619  Sum_probs=17.5

Q ss_pred             EEEecCCCCChhHHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~   69 (358)
                      .+++|+.|||||||+..+..
T Consensus        26 ~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            57889999999999998863

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=91.24  E-value=0.24  Score=44.12  Aligned_cols=24  Identities=21%  Similarity=0.386  Sum_probs=20.5

Q ss_pred             hccccEEEecCCCCChhHHHHHHH
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ....-|+|.|++|+|||++++.+.
T Consensus        27 ~~~~~vll~G~~GtGKt~la~~i~   50 (265)
T 2bjv_A           27 PLDKPVLIIGERGTGKELIASRLH   50 (265)
T ss_dssp             TSCSCEEEECCTTSCHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCcHHHHHHHHH
Confidence            345689999999999999998874

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=91.19  E-value=0.23  Score=49.30  Aligned_cols=26  Identities=27%  Similarity=0.494  Sum_probs=21.1

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhc
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ...-++++|+.||||||+++.+..+.
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34459999999999999999885444

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=91.17  E-value=0.087  Score=53.32  Aligned_cols=26  Identities=35%  Similarity=0.562  Sum_probs=21.9

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcCC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      -++.++|++||||||+++-+..++.+
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~~~p  407 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRFYDV  407 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCC
Confidence            36899999999999999988766643

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=91.06  E-value=0.12  Score=44.04  Aligned_cols=21  Identities=29%  Similarity=0.388  Sum_probs=18.4

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      .-++|.|++|+||||+++.+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~   75 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIA   75 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            468999999999999998763

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=91.02  E-value=0.11  Score=45.35  Aligned_cols=19  Identities=32%  Similarity=0.462  Sum_probs=17.1

Q ss_pred             cEEEecCCCCChhHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~   67 (358)
                      -++|+|++|+|||||+.|+
T Consensus        25 ~~~i~G~~GsGKTtl~~~~   43 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQF   43 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999998887

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=90.97  E-value=0.26  Score=41.70  Aligned_cols=20  Identities=25%  Similarity=0.394  Sum_probs=18.0

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      .++|.|++|+|||++++.+.
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~   59 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALA   59 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            49999999999999999873

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=90.97  E-value=0.15  Score=44.86  Aligned_cols=26  Identities=31%  Similarity=0.290  Sum_probs=21.8

Q ss_pred             hccccEEEecCCCCChhHHHHHHHHh
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~~l   70 (358)
                      .....|.|+|..||||||+.+.+...
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~   39 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKD   39 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            44567999999999999999988643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=90.95  E-value=0.048  Score=50.51  Aligned_cols=21  Identities=24%  Similarity=0.491  Sum_probs=18.7

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      -.++++|++|||||||++.+.
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~  194 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAIS  194 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHhc
Confidence            468999999999999999874

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=90.88  E-value=0.29  Score=41.86  Aligned_cols=20  Identities=25%  Similarity=0.433  Sum_probs=17.8

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -++|.|++|+||||+++.+.
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~   66 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLA   66 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999873

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=90.83  E-value=0.11  Score=48.77  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=19.7

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -++|+|++|||||||++++....
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999986443

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=90.83  E-value=0.12  Score=51.64  Aligned_cols=26  Identities=23%  Similarity=0.245  Sum_probs=21.8

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcCC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      -.+.|+|++|||||||+|-+..+..+
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~Gl~~p   73 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAGQLIP   73 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            36889999999999999998766543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=90.78  E-value=0.11  Score=51.60  Aligned_cols=20  Identities=25%  Similarity=0.370  Sum_probs=17.9

Q ss_pred             ccEEEecCCCCChhHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~   67 (358)
                      --++|+|++|||||||++++
T Consensus        40 e~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           40 RSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             SEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHH
Confidence            36889999999999999993

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=90.45  E-value=0.13  Score=49.62  Aligned_cols=21  Identities=24%  Similarity=0.360  Sum_probs=18.2

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      .-|+|+|.+||||||+.+++.
T Consensus       259 ~lIil~G~pGSGKSTla~~L~  279 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEHL  279 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            357788999999999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=90.25  E-value=0.14  Score=51.86  Aligned_cols=24  Identities=33%  Similarity=0.286  Sum_probs=20.9

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++||||||++|-+..+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            578999999999999999876654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=90.22  E-value=0.14  Score=45.98  Aligned_cols=23  Identities=26%  Similarity=0.431  Sum_probs=19.6

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ....+||.|++|+|||++++.+.
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la   72 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVA   72 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHH
Confidence            34469999999999999999874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=90.13  E-value=0.14  Score=51.25  Aligned_cols=25  Identities=28%  Similarity=0.304  Sum_probs=20.9

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcCC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      -+.|+|++||||||++|-+..++.+
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~~p   51 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEIIP   51 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCC
Confidence            4679999999999999998766543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=90.10  E-value=0.15  Score=46.27  Aligned_cols=22  Identities=27%  Similarity=0.526  Sum_probs=19.3

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      ..-+||.|++|+||||+++.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la   75 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVA   75 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHH
Confidence            3479999999999999999874

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=90.05  E-value=0.085  Score=53.15  Aligned_cols=24  Identities=25%  Similarity=0.516  Sum_probs=20.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.++|++||||||+++-+..++.
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            688999999999999998765554

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=89.99  E-value=0.16  Score=44.92  Aligned_cols=21  Identities=33%  Similarity=0.509  Sum_probs=18.5

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      .-+||.|++|+|||++++.+.
T Consensus        40 ~~vll~G~~GtGKT~la~~la   60 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVA   60 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            358999999999999999874

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=89.97  E-value=0.15  Score=46.68  Aligned_cols=26  Identities=27%  Similarity=0.342  Sum_probs=21.2

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcCC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      --|||.|++|+|||++++.+....+.
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~~~~   75 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANECQA   75 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHTTC
T ss_pred             ceEEEECCCCcCHHHHHHHHHHHhCC
Confidence            35999999999999999998654443

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=89.83  E-value=0.16  Score=47.10  Aligned_cols=24  Identities=33%  Similarity=0.486  Sum_probs=20.2

Q ss_pred             cEEEecCCCCChhHHHHHHHH-hcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKL-LFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~-l~~   72 (358)
                      .+++.|++|+||||+++.+.. ++.
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~   62 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFG   62 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcC
Confidence            399999999999999998854 443

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=89.79  E-value=0.35  Score=45.58  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=19.1

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      ...|+|+|++||||||+.+.+.
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHH
Confidence            3469999999999999999874

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=89.69  E-value=0.23  Score=42.77  Aligned_cols=25  Identities=32%  Similarity=0.400  Sum_probs=21.1

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      +.|.|.|..||||||+.+.+...++
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~g   28 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASELS   28 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4689999999999999999865443

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=89.68  E-value=0.49  Score=42.85  Aligned_cols=21  Identities=19%  Similarity=0.349  Sum_probs=18.3

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      ..+||.|++|+|||++++.+.
T Consensus        68 ~~vll~G~~GtGKT~la~~la   88 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALKMA   88 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            359999999999999998763

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=89.65  E-value=0.16  Score=48.71  Aligned_cols=20  Identities=25%  Similarity=0.336  Sum_probs=17.9

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -++|+|++|||||||++++.
T Consensus       180 i~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHH
Confidence            47899999999999999874

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=89.63  E-value=0.11  Score=47.50  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=16.6

Q ss_pred             cccEEEecCCCCChhHHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~   69 (358)
                      ..-|.|-|++||||||+.+.+..
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            44588999999999999999864

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=89.54  E-value=0.19  Score=43.27  Aligned_cols=22  Identities=32%  Similarity=0.526  Sum_probs=18.2

Q ss_pred             EEEecCCCCChhHHHHHHHHhc
Q 018283           50 LLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+++|+.|||||||+..+..+.
T Consensus        26 ~~I~G~NgsGKStil~ai~~~l   47 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAILVGL   47 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            5788999999999999886433

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=89.54  E-value=0.11  Score=52.34  Aligned_cols=24  Identities=38%  Similarity=0.506  Sum_probs=20.5

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ++.++|++||||||+++-+..++.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~~  394 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLID  394 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcc
Confidence            688999999999999998765554

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=89.50  E-value=0.19  Score=46.04  Aligned_cols=22  Identities=23%  Similarity=0.522  Sum_probs=18.8

Q ss_pred             ccEEEecCCCCChhHHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~   69 (358)
                      -.++++|++||||||++..+..
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA~  127 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLAA  127 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999988753

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=89.40  E-value=0.33  Score=46.12  Aligned_cols=24  Identities=25%  Similarity=0.279  Sum_probs=20.0

Q ss_pred             ccccEEEecCCCCChhHHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~   69 (358)
                      ..-.++|+|++||||||+++.+..
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            344689999999999999998753

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=89.32  E-value=0.31  Score=44.54  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=19.9

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ...-++|.|++|+|||++++.+.
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~   59 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIA   59 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999999874

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=89.27  E-value=0.18  Score=46.35  Aligned_cols=21  Identities=14%  Similarity=0.445  Sum_probs=18.8

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      --++|.|++|+||||+++.+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~   58 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAG   58 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            469999999999999999874

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=89.20  E-value=0.17  Score=51.22  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=21.1

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -.+.|+|++|||||||+|-+..+..
T Consensus       118 e~~~LiG~NGsGKSTLlkiL~Gll~  142 (607)
T 3bk7_A          118 MVVGIVGPNGTGKTTAVKILAGQLI  142 (607)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCC
Confidence            3688999999999999998876553

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=89.14  E-value=0.23  Score=46.51  Aligned_cols=22  Identities=18%  Similarity=0.371  Sum_probs=18.6

Q ss_pred             cEEEecCCCCChhHHHHHHHHh
Q 018283           49 KLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l   70 (358)
                      -|+|.|++||||||+.+.+...
T Consensus         9 lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCcHHHHHHHHHHH
Confidence            4788999999999999887543

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=89.10  E-value=0.41  Score=43.91  Aligned_cols=24  Identities=17%  Similarity=0.346  Sum_probs=20.9

Q ss_pred             hccccEEEecCCCCChhHHHHHHH
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ....-|||.|++|+|||++++.+.
T Consensus        23 ~~~~~vLi~Ge~GtGKt~lAr~i~   46 (304)
T 1ojl_A           23 PSDATVLIHGDSGTGKELVARALH   46 (304)
T ss_dssp             STTSCEEEESCTTSCHHHHHHHHH
T ss_pred             CCCCcEEEECCCCchHHHHHHHHH
Confidence            456689999999999999998874

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=88.95  E-value=0.48  Score=44.58  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=21.0

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ...+++.|++|+|||++++.+....
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999885444

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=88.94  E-value=0.28  Score=49.86  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=18.7

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      .-|+|.|.+||||||+.+.+.
T Consensus        53 ~lIvLtGlsGSGKSTlAr~La   73 (630)
T 1x6v_B           53 CTVWLTGLSGAGKTTVSMALE   73 (630)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHH
Confidence            458999999999999999884

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=88.94  E-value=0.25  Score=43.60  Aligned_cols=26  Identities=46%  Similarity=0.565  Sum_probs=21.0

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhc
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ..+++.|+|++||||||+.+.+..-+
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999885444

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=88.84  E-value=0.13  Score=46.01  Aligned_cols=25  Identities=36%  Similarity=0.478  Sum_probs=20.7

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHh
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l   70 (358)
                      +..-|++.|..||||||+++.+..-
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4557889999999999999987533

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=88.80  E-value=0.21  Score=46.47  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=18.9

Q ss_pred             cEEEecCCCCChhHHHHHHHHh
Q 018283           49 KLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l   70 (358)
                      .|+|+|++||||||+.+.+..-
T Consensus         7 ~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999987543

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=88.72  E-value=0.22  Score=43.06  Aligned_cols=22  Identities=23%  Similarity=0.225  Sum_probs=18.6

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      ...|+++|++|+||||+...+.
T Consensus        34 g~~ilI~GpsGsGKStLA~~La   55 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELV   55 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3468999999999999988763

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=88.69  E-value=0.22  Score=50.49  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=19.9

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+.|+|+.|||||||+|.+..+.
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999986554

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=88.69  E-value=0.24  Score=45.68  Aligned_cols=23  Identities=22%  Similarity=0.537  Sum_probs=19.0

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -++++|++||||||++..+...+
T Consensus       106 vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          106 VIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCChHHHHHHHHHHHH
Confidence            47799999999999998875433

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=88.69  E-value=0.2  Score=50.01  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=19.5

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+.|+|++|||||||+|.+..+.
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46799999999999999886544

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=88.58  E-value=0.56  Score=43.91  Aligned_cols=28  Identities=25%  Similarity=0.440  Sum_probs=22.5

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhcCCC
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLFQTG   74 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~~~~   74 (358)
                      ...|||.|++|+|||++++.+....+..
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~~~~   78 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLLDVP   78 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            3469999999999999999986554433

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=88.44  E-value=0.23  Score=46.99  Aligned_cols=19  Identities=32%  Similarity=0.623  Sum_probs=17.2

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      .+|+|+.|||||||+..+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6789999999999999875

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=88.40  E-value=0.24  Score=43.51  Aligned_cols=22  Identities=32%  Similarity=0.379  Sum_probs=18.9

Q ss_pred             ccEEEecCCCCChhHHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~   69 (358)
                      .-|++-|..||||||+++.+..
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            3578899999999999998853

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=88.37  E-value=0.32  Score=47.58  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=19.7

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ..-.+||+|++|+|||++++.+.
T Consensus       200 ~~~~~LL~G~pG~GKT~la~~la  222 (468)
T 3pxg_A          200 TKNNPVLIGEPGVGKTAIAEGLA  222 (468)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHH
Confidence            34578999999999999999874

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=88.31  E-value=0.23  Score=46.22  Aligned_cols=22  Identities=18%  Similarity=0.428  Sum_probs=19.1

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      .--++|.|++|+||||+++.+.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~   66 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVL   66 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            3468999999999999999874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=88.30  E-value=0.24  Score=49.38  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=20.0

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+.|+|+.|||||||+|.+..+.
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999986554

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=88.25  E-value=0.25  Score=44.22  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=19.0

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      ..-+||.|++|+|||++++.+.
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia   85 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIA   85 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHH
Confidence            4468999999999999998874

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=88.25  E-value=0.16  Score=50.87  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=20.6

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHh
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l   70 (358)
                      +...++|+|.+||||||+++.+...
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            4456899999999999999988533

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=88.23  E-value=0.5  Score=44.08  Aligned_cols=21  Identities=33%  Similarity=0.336  Sum_probs=18.3

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      --++|.|++|+||||+++.+.
T Consensus        46 ~~vll~G~~G~GKT~la~~l~   66 (384)
T 2qby_B           46 FSNLFLGLTGTGKTFVSKYIF   66 (384)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            368899999999999998873

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=88.23  E-value=0.24  Score=44.99  Aligned_cols=20  Identities=30%  Similarity=0.557  Sum_probs=18.2

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -+++.|++|+|||++++.+.
T Consensus        49 ~~ll~G~~GtGKt~la~~la   68 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLA   68 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            58999999999999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=88.18  E-value=0.25  Score=50.09  Aligned_cols=23  Identities=26%  Similarity=0.560  Sum_probs=19.8

Q ss_pred             EEEecCCCCChhHHHHHHHHhcC
Q 018283           50 LLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~~   72 (358)
                      +.|+|++|||||||++.+..+..
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            68999999999999998865553

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=88.15  E-value=0.5  Score=43.78  Aligned_cols=20  Identities=25%  Similarity=0.506  Sum_probs=18.1

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      .+++.|++|+||||+++.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la   67 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALA   67 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999874

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=88.04  E-value=0.11  Score=45.93  Aligned_cols=23  Identities=26%  Similarity=0.276  Sum_probs=19.1

Q ss_pred             EEEecCCCCChhHHHHHHHHhcC
Q 018283           50 LLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ++|+|++|||||||++.+..+..
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcccc
Confidence            36889999999999998865554

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=88.01  E-value=0.26  Score=44.58  Aligned_cols=22  Identities=23%  Similarity=0.540  Sum_probs=19.5

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      ..-+++.|++|+|||++++.+.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la   71 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLA   71 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999874

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=87.97  E-value=0.26  Score=51.29  Aligned_cols=20  Identities=35%  Similarity=0.559  Sum_probs=18.1

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -++|+|++||||||++|++-
T Consensus       578 i~~I~GpNGsGKSTlLr~ia  597 (765)
T 1ewq_A          578 LVLITGPNMAGKSTFLRQTA  597 (765)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHH
Confidence            47899999999999999985

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=87.96  E-value=0.28  Score=41.49  Aligned_cols=20  Identities=25%  Similarity=0.398  Sum_probs=17.6

Q ss_pred             ccEEEecCCCCChhHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~   67 (358)
                      .-||+.|++|+||||+...+
T Consensus        17 ~gvli~G~SGaGKStlal~L   36 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLAL   36 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHH
Confidence            35899999999999998776

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=87.90  E-value=0.34  Score=44.11  Aligned_cols=23  Identities=22%  Similarity=0.083  Sum_probs=18.5

Q ss_pred             ccEEEecCCCCChhHHHHHHHHh
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l   70 (358)
                      .-+||.|++|+|||++++.+..-
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            34667799999999999988533

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=87.70  E-value=0.27  Score=46.41  Aligned_cols=20  Identities=25%  Similarity=0.338  Sum_probs=17.6

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      =++|+|++|||||||+.++.
T Consensus        63 i~~I~GppGsGKSTLal~la   82 (356)
T 3hr8_A           63 IVEIFGQESSGKTTLALHAI   82 (356)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37888999999999999974

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=87.63  E-value=0.33  Score=46.73  Aligned_cols=25  Identities=24%  Similarity=0.446  Sum_probs=21.2

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcCC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      -++++|+.|||||||++.+..+..+
T Consensus        28 ~~~i~G~nG~GKstll~ai~~~~~~   52 (430)
T 1w1w_A           28 FTSIIGPNGSGKSNMMDAISFVLGV   52 (430)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhhcc
Confidence            3688999999999999999876654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.59  E-value=0.57  Score=45.31  Aligned_cols=20  Identities=30%  Similarity=0.567  Sum_probs=18.3

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -|||.|++|+|||++++.+.
T Consensus       208 GiLL~GPPGtGKT~lakAiA  227 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVA  227 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            49999999999999999874

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=87.55  E-value=0.29  Score=45.84  Aligned_cols=21  Identities=33%  Similarity=0.491  Sum_probs=18.3

Q ss_pred             cEEEecCCCCChhHHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~   69 (358)
                      -|+|+|+.|||||||...+..
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998853

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=87.55  E-value=0.28  Score=45.44  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=18.7

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      --|||.|++|+|||++++.+.
T Consensus        46 ~~iLL~GppGtGKT~la~ala   66 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVA   66 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHH
Confidence            359999999999999999874

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=87.50  E-value=0.29  Score=51.18  Aligned_cols=20  Identities=35%  Similarity=0.541  Sum_probs=18.1

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -++|+|+.||||||++|++-
T Consensus       609 i~~ItGpNGsGKSTlLr~ia  628 (800)
T 1wb9_A          609 MLIITGPNMGGKSTYMRQTA  628 (800)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHH
Confidence            47899999999999999985

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=87.50  E-value=0.25  Score=49.30  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=19.9

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -++|+|++|+||||+++.+....
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            58899999999999999986544

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=87.48  E-value=0.31  Score=42.43  Aligned_cols=22  Identities=27%  Similarity=0.129  Sum_probs=18.5

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      ..-|++.|.+||||||+++.+.
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~   27 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLA   27 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHH
Confidence            3457888999999999999874

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=87.46  E-value=0.27  Score=43.27  Aligned_cols=24  Identities=17%  Similarity=0.160  Sum_probs=17.0

Q ss_pred             hccccEEEecCCCCChhHHHHHHH
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~   68 (358)
                      .+..-|++.|.+||||||+++.+.
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~   46 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFC   46 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHH
Confidence            345568899999999999999874

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=87.33  E-value=0.19  Score=55.55  Aligned_cols=26  Identities=35%  Similarity=0.590  Sum_probs=22.4

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcCC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      -||.++|++||||||+++-+-.+|.+
T Consensus      1106 e~vaIVG~SGsGKSTL~~lL~rl~~p 1131 (1321)
T 4f4c_A         1106 QTLALVGPSGCGKSTVVALLERFYDT 1131 (1321)
T ss_dssp             CEEEEECSTTSSTTSHHHHHTTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCccC
Confidence            37899999999999999998777653

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=87.32  E-value=0.29  Score=45.74  Aligned_cols=20  Identities=25%  Similarity=0.493  Sum_probs=18.1

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -++|.|++|+||||+++.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~   65 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLW   65 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999874

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=87.17  E-value=0.14  Score=48.97  Aligned_cols=24  Identities=29%  Similarity=0.376  Sum_probs=21.3

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .++|+|+.|||||||++-+..+.+
T Consensus        62 ~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            688999999999999999876665

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=87.15  E-value=0.3  Score=45.03  Aligned_cols=21  Identities=33%  Similarity=0.512  Sum_probs=18.8

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      ..|||.|++|+|||++++.+.
T Consensus        52 ~~vLl~GppGtGKT~la~aia   72 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVA   72 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            359999999999999999875

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=87.08  E-value=0.22  Score=44.28  Aligned_cols=20  Identities=30%  Similarity=0.546  Sum_probs=18.0

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -++|.|++|+|||++++.+.
T Consensus        46 ~vll~G~~GtGKT~la~~la   65 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVA   65 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            48999999999999999874

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=86.93  E-value=0.3  Score=48.47  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=19.6

Q ss_pred             cccEEEecCCCCChhHHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~   69 (358)
                      .--++|+|++|||||||++++..
T Consensus       281 G~i~~i~G~~GsGKSTLl~~l~g  303 (525)
T 1tf7_A          281 DSIILATGATGTGKTLLVSRFVE  303 (525)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHH
Confidence            34688999999999999999853

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=86.86  E-value=0.33  Score=45.02  Aligned_cols=20  Identities=15%  Similarity=0.262  Sum_probs=17.5

Q ss_pred             EEEecCCCCChhHHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~   69 (358)
                      |+|.|++||||||+...+..
T Consensus         6 i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            6 VAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCcCCHHHHHHHHHH
Confidence            67889999999999998853

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=86.84  E-value=0.34  Score=44.74  Aligned_cols=24  Identities=38%  Similarity=0.573  Sum_probs=20.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -.+++|+.|||||||++.+..+.+
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~~llg   49 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIKWVFG   49 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhC
Confidence            468899999999999999876653

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=86.83  E-value=0.3  Score=45.50  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=19.4

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ..--++|.|++|+||||+++.+.
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~   65 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVL   65 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHH
Confidence            34469999999999999998873

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=86.79  E-value=0.59  Score=42.76  Aligned_cols=20  Identities=35%  Similarity=0.542  Sum_probs=18.0

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -++|.|+.|+||||+++++.
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~   52 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFL   52 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHH
Confidence            57888999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	7e-25
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-19
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	4e-19
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	8e-18
d1cipa1	121	a.66.1.1 (A:61-181) Transducin (alpha subunit), in	1e-14
d1tada1	121	a.66.1.1 (A:57-177) Transducin (alpha subunit), in	6e-14
d1zcba1	126	a.66.1.1 (A:76-201) Transducin (alpha subunit), in	8e-14
d1zcaa1	122	a.66.1.1 (A:83-204) Transducin (alpha subunit), in	2e-10
d2bcjq1	117	a.66.1.1 (Q:67-183) Transducin (alpha subunit), in	1e-08
d1azta1	114	a.66.1.1 (A:88-201) Transducin (alpha subunit), in	1e-05

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 98.7 bits (245), Expect = 7e-25
 Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 18/196 (9%)

Query: 166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 225
           V T+G+ E +F            + +FDVGGQR+ERRKWI  F  V+A+IF  A S Y+ 
Sbjct: 32  VLTSGIFETKFQ------VDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNM 85

Query: 226 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 285
            + ED Q NR+ E   LF  +         S +LFLNK D+  +KVL     + ++F ++
Sbjct: 86  VIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEF 145

Query: 286 QPVST---------GKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLV 336
              +T             +  A  F++ +F  +   STA          + T A+D + +
Sbjct: 146 ARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRI---STASGDGRHYCYPHFTCAVDTENI 202

Query: 337 KKTFKLVDETLRRRHL 352
           ++ F    + ++R HL
Sbjct: 203 RRVFNDCRDIIQRMHL 218

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.4 bits (205), Expect = 1e-19
 Identities = 52/191 (27%), Positives = 100/191 (52%), Gaps = 16/191 (8%)

Query: 162 LYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAIS 221
           ++ +  T G+ E  F            +++ DVGGQR+ER++W   F+ V++++F  + S
Sbjct: 25  IHGQDPTKGIHEYDFEIKNVP------FKMVDVGGQRSERKRWFECFDSVTSILFLVSSS 78

Query: 222 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEW 281
           E+DQ L ED Q NR+ E+  +F+ ++    F   S +LFLNK D+ E+KV  V +   ++
Sbjct: 79  EFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSI--KDY 136

Query: 282 FKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 341
           F +++        + +  +F+ + F          D+  R    + TTA++ + ++  F+
Sbjct: 137 FLEFEGDP---HCLRDVQKFLVECFRGKR-----RDQQQRPLYHHFTTAINTENIRLVFR 188

Query: 342 LVDETLRRRHL 352
            V +T+   +L
Sbjct: 189 DVKDTILHDNL 199

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.9 bits (201), Expect = 4e-19
 Identities = 71/184 (38%), Positives = 103/184 (55%), Gaps = 17/184 (9%)

Query: 168 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTL 227
            TG+VE  F+    H      +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD  L
Sbjct: 29  GTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVL 82

Query: 228 FEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQP 287
            EDE+ NRM E+ +LFD +     F  TS +LFLNK D+FE+K+ K PL          P
Sbjct: 83  AEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPL------TICYP 136

Query: 288 VSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 347
              G    E A  +++ +FE+L        +  +    + T A D K V+  F  V + +
Sbjct: 137 EYAGSNTYEEAAAYIQCQFEDLN-----KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 191

Query: 348 RRRH 351
            + +
Sbjct: 192 IKNN 195

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.8 bits (193), Expect = 8e-18
 Identities = 67/185 (36%), Positives = 108/185 (58%), Gaps = 17/185 (9%)

Query: 168 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTL 227
           TTG++E  F            +R+ DVGGQR+ERRKWIH FE V++++F  A+SEYDQ L
Sbjct: 32  TTGIIEYPFDLQSVI------FRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVL 85

Query: 228 FEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQP 287
            E + +NRM E+K LF  ++  P F+ +S +LFLNK D+ E+K++   L   ++F +Y  
Sbjct: 86  VESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLV--DYFPEYD- 142

Query: 288 VSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 347
               +++ + A EF+ K F +L   S      D++   + T A D + ++  F  V +T+
Sbjct: 143 --GPQRDAQAAREFILKMFVDLNPDS------DKIIYSHFTCATDTENIRFVFAAVKDTI 194

Query: 348 RRRHL 352
            + +L
Sbjct: 195 LQLNL 199

>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 121

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.6 bits (165), Expect = 1e-14
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 41/128 (32%)

Query: 75  FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGR 134
           + E E K Y +V+++N  Q+I  +      L  +  D+          +   +L  + G 
Sbjct: 1   YSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDA-------ARADDARQLFVLAGA 53

Query: 135 LDYPRLTKELAEDIETLWADPAIQ----------------------------------DD 160
            +   +T ELA  I+ LW D  +Q                                   D
Sbjct: 54  AEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQD 113

Query: 161 VLYARVRT 168
           VL  RV+T
Sbjct: 114 VLRTRVKT 121

>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]} Length = 121

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.7 bits (160), Expect = 6e-14
 Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 41/128 (32%)

Query: 75  FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGR 134
           +   E   +I++I+ N  Q+I  +      L     D       S  ++   KL  +   
Sbjct: 1   YSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGD-------SARQDDARKLMHMADT 53

Query: 135 LDYPRLTKELAEDIETLWADPAIQ----------------------------------DD 160
           ++   + KE+++ I+ LW D  IQ                                   D
Sbjct: 54  IEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQD 113

Query: 161 VLYARVRT 168
           VL +RV+T
Sbjct: 114 VLRSRVKT 121

>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.4 bits (159), Expect = 8e-14
 Identities = 17/84 (20%), Positives = 34/84 (40%)

Query: 75  FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGR 134
           FD+   + +   I++NV + ++VL D  ++L     D+   +   +      +       
Sbjct: 1   FDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQG 60

Query: 135 LDYPRLTKELAEDIETLWADPAIQ 158
           +   R+  +    I  LW D  IQ
Sbjct: 61  MVETRVFLQYLPAIRALWEDSGIQ 84

>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.7 bits (134), Expect = 2e-10
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 75  FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGR 134
           FD+  L  +   I  N+ +  +VL D   +L      S     + ++           G 
Sbjct: 1   FDQKALLEFRDTIFDNILKGSRVLVDARDKLGIPWQHSE----NEKHGMFLMAFENKAGL 56

Query: 135 LDYPRLTKELAEDIETLWADPAIQ 158
              P   +     +  LW D  I+
Sbjct: 57  PVEPATFQLYVPALSALWRDSGIR 80

>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.7 bits (121), Expect = 1e-08
 Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 8/84 (9%)

Query: 75  FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGR 134
           + + + + +  +++ N++  ++ +      L        K     E+ +   +L      
Sbjct: 1   YSDEDKRGFTKLVYQNIFTAMQAMIRAMDTL--------KIPYKYEHNKAHAQLVREVDV 52

Query: 135 LDYPRLTKELAEDIETLWADPAIQ 158
                      + I++LW DP IQ
Sbjct: 53  EKVSAFENPYVDAIKSLWNDPGIQ 76

>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]} Length = 114

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 81  KSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRL 140
            + +  I  N+ + I+ +      L      +     + EN+   + +  +    D+   
Sbjct: 2   ATKVQDIKNNLKEAIETIVAAMSNLVPPVELA-----NPENQFRVDYILSVMNVPDFD-F 55

Query: 141 TKELAEDIETLWADPAIQ 158
             E  E  + LW D  ++
Sbjct: 56  PPEFYEHAKALWEDEGVR 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	100.0
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	100.0
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	100.0
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	100.0
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.93
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.93
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.92
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.92
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.91
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.91
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.91
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.9
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.9
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.9
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.9
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.9
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.89
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.89
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.88
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.88
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.88
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.87
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.87
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.87
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.86
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.86
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.85
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.85
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.84
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.8
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.79
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.77
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.64
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.63
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.53
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.5
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.49
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.49
d1tada1	121	Transducin (alpha subunit), insertion domain {Cow	99.48
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.48
d1cipa1	121	Transducin (alpha subunit), insertion domain {Rat	99.44
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.42
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.38
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.37
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.36
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.36
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.35
d2bcjq1	117	Transducin (alpha subunit), insertion domain {Mous	99.33
d1zcaa1	122	Transducin (alpha subunit), insertion domain {Mous	99.31
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.26
d1zcba1	126	Transducin (alpha subunit), insertion domain {Mous	99.24
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.18
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.15
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.13
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.09
d1azta1	114	Transducin (alpha subunit), insertion domain {Cow	99.01
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.0
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.98
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.91
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.88
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.88
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.86
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.78
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.63
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.62
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.48
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.34
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.8
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.77
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	96.94
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.87
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	96.82
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	96.81
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.73
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.59
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.49
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.42
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.4
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.36
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.24
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.19
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.19
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.15
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.12
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.12
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.1
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.09
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.09
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.07
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.01
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.01
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.88
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.85
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.84
d1okkd2	207	GTPase domain of the signal recognition particle r	95.76
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.73
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.73
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.67
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.67
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	95.64
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.61
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.61
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.59
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.59
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.53
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.53
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.52
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.47
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.45
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.43
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.4
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.34
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.33
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.32
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.32
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.31
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.22
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.22
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.21
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.2
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.16
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.14
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.14
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.1
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.09
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.98
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	94.98
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	94.81
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	94.78
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.77
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.71
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	94.7
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	94.65
d1g2912	240	Maltose transport protein MalK, N-terminal domain	94.62
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	94.56
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	94.48
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.46
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	94.43
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	94.23
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.22
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	93.87
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	93.65
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	93.6
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.52
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	93.34
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	93.3
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	93.29
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	93.19
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	93.11
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	93.08
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.07
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.02
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.77
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	92.54
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	92.5
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	92.34
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	92.22
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	92.2
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	92.11
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	92.1
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	92.06
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	92.06
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	91.77
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	91.69
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	91.56
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	91.54
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	91.49
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	91.05
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	90.84
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	90.84
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	90.7
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	90.69
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	90.63
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	90.6
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.57
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	90.3
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	90.11
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	90.11
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	89.97
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	89.87
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	89.73
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	89.5
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.29
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	89.28
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	89.24
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	88.84
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	88.75
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	88.46
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	88.32
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	88.26
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	88.22
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	88.07
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	87.88
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	87.68
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	87.61
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	87.54
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	87.46
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	87.42
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	87.29
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	87.17
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	87.1
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	86.93
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	86.44
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	85.7
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	85.25
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	85.14
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	84.82
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	84.76
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	84.4
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	84.33
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	84.33
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	83.95
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	83.51
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	83.08
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	83.01
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	82.51
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	82.41
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	82.24
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	82.1
d1xpua3	289	Transcription termination factor Rho, ATPase domai	80.8
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	80.57
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	80.27
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	80.11

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-40  Score=297.72  Aligned_cols=181  Identities=32%  Similarity=0.540  Sum_probs=162.7

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||+|+.+..+      +.+++.+++||+|||+.+|++|.+||+++++++||+|++++++.+.++...+++.+++.+|+.
T Consensus        32 ~pTiG~~~~~~------~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~  105 (221)
T d1azta2          32 VLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKS  105 (221)
T ss_dssp             CCCCSCEEEEE------EETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHH
T ss_pred             CCCCCeEEEEE------EECcEEEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHH
Confidence            48999999888      888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCC--------Cc-ccHHHHHHHHHHHHHHHhhhcCCC
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVST--------GK-QEIENAYEFVKKKFEELYFQSTAP  316 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~--------g~-~~~~~~~~~i~~~f~~~~~~~~~~  316 (358)
                      +++++.+.++|++|++||+||+++|+...+....+|||+|.+..+        |+ .++.+|.+||..+|.++++.+.. 
T Consensus       106 il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~-  184 (221)
T d1azta2         106 IWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGD-  184 (221)
T ss_dssp             HHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCT-
T ss_pred             HhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCC-
Confidence            999999999999999999999999997766666778999964321        32 46888999999999998755443 


Q ss_pred             CCCCceEEEEEeeccChhhHHHHHHHHHHHHHHhhhhhc
Q 018283          317 DRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEA  355 (358)
Q Consensus       317 ~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~~~~~~~  355 (358)
                        .++.+|.|+|||+|++||+.+|+.|.+.|++.||++.
T Consensus       185 --~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~l~~~  221 (221)
T d1azta2         185 --GRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQY  221 (221)
T ss_dssp             --TSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHHHTTC
T ss_pred             --CCCceeeeecceeccHHHHHHHHHHHHHHHHHHhhcC
Confidence              4677999999999999999999999999999999863

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-37  Score=272.39  Aligned_cols=171  Identities=31%  Similarity=0.575  Sum_probs=147.2

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|+....+      +.+...+++||++||+.++..|.+||++++++++|+|+++++..+.+....+++.++..+|..
T Consensus        29 ~pTiG~~~~~~------~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (200)
T d1zcba2          29 DPTKGIHEYDF------EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFET  102 (200)
T ss_dssp             CCCSSEEEEEE------EETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHH
T ss_pred             CCeeeeEEEEE------eeeeeeeeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHH
Confidence            68999999999      889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCc-ccHHHHHHHHHHHHHHHhhhcCCCCCCCceEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGK-QEIENAYEFVKKKFEELYFQSTAPDRVDRVFK  324 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~  324 (358)
                      +++++...++|++|++||+|++++++...++..  +||+|.    |. .+.+.+.+|+.++|.+...     ....+.+|
T Consensus       103 i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~--~f~~~~----~~~~~~~~~~~~~~~~f~~~~~-----~~~~~~iy  171 (200)
T d1zcba2         103 IVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKD--YFLEFE----GDPHCLRDVQKFLVECFRGKRR-----DQQQRPLY  171 (200)
T ss_dssp             HHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGG--TCTTCC----SCTTCHHHHHHHHHHHHHTTCS-----SCC--CCE
T ss_pred             HhhChhhcCceEEEEeccchhhhhhccccHHHH--hCcccc----CCcchHHHHHHHHHHHHHHhcc-----CCCCCceE
Confidence            999998999999999999999999988777764  488883    43 6789999999999997642     22457899


Q ss_pred             EEEeeccChhhHHHHHHHHHHHHHHhhhh
Q 018283          325 IYRTTALDPKLVKKTFKLVDETLRRRHLF  353 (358)
Q Consensus       325 ~~~tSA~d~~ni~~vf~~i~~~i~~~~~~  353 (358)
                      +|+|||+|++||+.+|+.|.+.|+++|||
T Consensus       172 ~~~TsA~d~~ni~~vf~~v~d~i~~~~l~  200 (200)
T d1zcba2         172 HHFTTAINTENIRLVFRDVKDTILHDNLK  200 (200)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEeeeeCcHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999986

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5e-34  Score=247.73  Aligned_cols=168  Identities=42%  Similarity=0.740  Sum_probs=148.9

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  246 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i  246 (358)
                      ||+|+.+..+      +...+.+++||+|||+.++.+|..||++++++++|+|+++++.........+.+.++..+|..+
T Consensus        28 ~t~~~~~~~~------~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i  101 (195)
T d1svsa1          28 AGTGIVETHF------TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI  101 (195)
T ss_dssp             CCCSEEEEEE------EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred             CCccEEEEEE------EeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHH
Confidence            6778888888      8889999999999999999999999999999999999999998887777888999999999999


Q ss_pred             HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283          247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY  326 (358)
Q Consensus       247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~  326 (358)
                      ++++...++|+++++||+|++.+++...++..+  ||++    .++.+..++..++..+|.+....     ...+.+++|
T Consensus       102 ~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~f~~~~~~-----~~~~~~~~~  170 (195)
T d1svsa1         102 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEY----AGSNTYEEAAAYIQCQFEDLNKR-----KDTKEIYTH  170 (195)
T ss_dssp             HTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGT--CTTC----CSCSSHHHHHHHHHHHHHTTCSC-----TTTCCEEEE
T ss_pred             hcccccCCCCEEEEeccchhhhhhccchHHHHH--hhhh----cCcccHHHHHHHHHHHHHHHhcc-----cCCCcceeE
Confidence            999888899999999999999999888777665  6666    45577889999999999987532     135789999


Q ss_pred             EeeccChhhHHHHHHHHHHHHHHhh
Q 018283          327 RTTALDPKLVKKTFKLVDETLRRRH  351 (358)
Q Consensus       327 ~tSA~d~~ni~~vf~~i~~~i~~~~  351 (358)
                      +|||+|++||+++|+.|++.|+++|
T Consensus       171 ~tSA~~~~nv~~~F~~v~~~il~~n  195 (195)
T d1svsa1         171 FTCATDTKNVQFVFDAVTDVIIKNN  195 (195)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEeECCHhHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999865

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.5e-34  Score=247.97  Aligned_cols=170  Identities=40%  Similarity=0.675  Sum_probs=150.6

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|+....+      ....+.+++||++||+.++..|.+||++++++++|+|+++++.....+...+++.+++.+|..
T Consensus        30 ~pTiG~~~~~~------~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  103 (200)
T d2bcjq2          30 VPTTGIIEYPF------DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRT  103 (200)
T ss_dssp             CCCCSCEEEEE------ECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHH
T ss_pred             CceeeEEEEEE------eccceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHH
Confidence            58999998888      888999999999999999999999999999999999999999998888889999999999999


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCC-cccHHHHHHHHHHHHHHHhhhcCCCCCCCceEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTG-KQEIENAYEFVKKKFEELYFQSTAPDRVDRVFK  324 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g-~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~  324 (358)
                      +++.+...++|+++++||+|++++++...++..+  +|++    .+ +.+...+.+|+..+|.+...   .   .++.++
T Consensus       104 ~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~i~~~f~~~~~---~---~~~~~~  171 (200)
T d2bcjq2         104 IITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDY--FPEY----DGPQRDAQAAREFILKMFVDLNP---D---SDKIIY  171 (200)
T ss_dssp             HHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHH--STTC----CSCSSCHHHHHHHHHHHHHTTCS---C---TTSCEE
T ss_pred             HHhhhhccCccEEEecchhhhhhhcccchHHHHh--cccc----cCCchhHHHHHHHHHHHHHHhcc---c---CCCceE
Confidence            9999888999999999999999998866554433  5555    33 36789999999999998631   1   357799


Q ss_pred             EEEeeccChhhHHHHHHHHHHHHHHhhhh
Q 018283          325 IYRTTALDPKLVKKTFKLVDETLRRRHLF  353 (358)
Q Consensus       325 ~~~tSA~d~~ni~~vf~~i~~~i~~~~~~  353 (358)
                      +|+|||+|++||+++|+.|.+.|++.||+
T Consensus       172 ~~~tSAk~~~ni~~vF~~i~~~I~~~nl~  200 (200)
T d2bcjq2         172 SHFTCATDTENIRFVFAAVKDTILQLNLK  200 (200)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEeEEEcCHhHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999885

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.93  E-value=1.1e-25  Score=193.83  Aligned_cols=136  Identities=18%  Similarity=0.304  Sum_probs=103.1

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|......      ..+++.+.+||++|++.++..|..|+.++++++||+|+          ++..++.+...++..
T Consensus        46 ~~t~~~~~~~~------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~----------~d~~s~~~~~~~l~~  109 (182)
T d1moza_          46 KPTIGFNVETL------SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDS----------TDKDRMSTASKELHL  109 (182)
T ss_dssp             CSSTTCCEEEE------EETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEET----------TCTTTHHHHHHHHHH
T ss_pred             ccccceEEEEE------eeCCEEEEEEecccccccchhHHhhhccceeEEEEeee----------cccccchhHHHHHHH
Confidence            46777777766      67889999999999999999999999999999999998          466788888899988


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      ++......+.|++|++||+|+..+                       .+..+..+.+.     +   ...   ..+.+.+
T Consensus       110 ~~~~~~~~~~piliv~NK~Dl~~~-----------------------~~~~~i~~~~~-----~---~~~---~~~~~~~  155 (182)
T d1moza_         110 MLQEEELQDAALLVFANKQDQPGA-----------------------LSASEVSKELN-----L---VEL---KDRSWSI  155 (182)
T ss_dssp             HTTSSTTSSCEEEEEEECTTSTTC-----------------------CCHHHHHHHTT-----T---TTC---CSSCEEE
T ss_pred             HHHhhccCCcceEEEEEeeccccc-----------------------cCHHHHHHHHH-----H---HHH---hhCCCEE
Confidence            888777788999999999998542                       11122111110     0   001   2456788


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHHhh
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRRRH  351 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~~~  351 (358)
                      ++|||++|+||.++|++|.+.|.++.
T Consensus       156 ~e~SA~~g~gv~e~~~~l~~~i~~~~  181 (182)
T d1moza_         156 VASSAIKGEGITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             EEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            99999999999999999999987653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.93  E-value=2e-25  Score=188.81  Aligned_cols=134  Identities=17%  Similarity=0.279  Sum_probs=106.8

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|+....+      ..+++.+.+||++|++.++..|..++++++++++|+|+          .+...+.++..++..
T Consensus        31 ~~t~~~~~~~~------~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~----------~d~~~~~~~~~~~~~   94 (165)
T d1ksha_          31 SPTLGFNIKTL------EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS----------ADRQRMQDCQRELQS   94 (165)
T ss_dssp             CCCSSEEEEEE------EETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET----------TCGGGHHHHHHHHHH
T ss_pred             cceEeeeeeec------cccccceeeeecCcchhhhhHHHhhhhhhhcceeeeec----------ccchhHHHHHHhhhh
Confidence            57888888888      78889999999999999999999999999999999998          456788888888888


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      .+......+.|++||+||+|+.+.+                       ..++....+...   .     .   ..+.+.+
T Consensus        95 ~~~~~~~~~~p~iiv~nK~Dl~~~~-----------------------~~~~~~~~~~~~---~-----~---~~~~~~~  140 (165)
T d1ksha_          95 LLVEERLAGATLLIFANKQDLPGAL-----------------------SCNAIQEALELD---S-----I---RSHHWRI  140 (165)
T ss_dssp             HHTCGGGTTCEEEEEEECTTSTTCC-----------------------CHHHHHHHTTGG---G-----C---CSSCEEE
T ss_pred             hhhhcccCCCceEEEEecccccccc-----------------------CHHHHHHHHHhh---h-----h---hcCCCEE
Confidence            8877777889999999999985431                       112222111100   0     1   2356788


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~  349 (358)
                      ++|||++|+||.++|+++.+.|.+
T Consensus       141 ~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         141 QGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHc
Confidence            999999999999999999998864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.93  E-value=1.2e-25  Score=190.36  Aligned_cols=131  Identities=19%  Similarity=0.317  Sum_probs=104.2

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|+....+      +.+.+.+.+||++|++.++..|.+||.+++++++|+|+          .+..++.+...++..
T Consensus        32 ~~T~~~~~~~~------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~~   95 (164)
T d1zd9a1          32 IPTVGFNMRKI------TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDA----------ADQEKIEASKNELHN   95 (164)
T ss_dssp             CCCCSEEEEEE------EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEET----------TCGGGHHHHHHHHHH
T ss_pred             cccceeeeeee------eeeeEEEEEeeccccccccccccccccccchhhccccc----------ccccccchhhhhhhh
Confidence            47888887777      77889999999999999999999999999999999998          456778888999999


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +++.+..+++|++|++||+|+.+.                       .+..+..+.+...        ..   ..+.+.+
T Consensus        96 ~~~~~~~~~~pi~lv~nK~Dl~~~-----------------------~~~~~i~~~~~~~--------~~---~~~~~~~  141 (164)
T d1zd9a1          96 LLDKPQLQGIPVLVLGNKRDLPGA-----------------------LDEKELIEKMNLS--------AI---QDREICC  141 (164)
T ss_dssp             HHTCGGGTTCCEEEEEECTTSTTC-----------------------CCHHHHHHHTTGG--------GC---CSSCEEE
T ss_pred             hhhhhcccCCcEEEEEeccccchh-----------------------hhHHHHHHHHHHH--------HH---HhCCCEE
Confidence            988877789999999999998542                       1122222211100        01   2356788


Q ss_pred             EEeeccChhhHHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~  346 (358)
                      +++||++++||.++|+++.+.
T Consensus       142 ~e~Sa~~g~gv~e~~~~l~~~  162 (164)
T d1zd9a1         142 YSISCKEKDNIDITLQWLIQH  162 (164)
T ss_dssp             EECCTTTCTTHHHHHHHHHHT
T ss_pred             EEEeCcCCcCHHHHHHHHHHc
Confidence            999999999999999998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-24  Score=184.95  Aligned_cols=121  Identities=17%  Similarity=0.113  Sum_probs=88.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++||+.++..|..||++++++|+|+|+          ++..++.+...|+..+.......++|++||+|
T Consensus        44 ~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~----------t~~~s~~~~~~~~~~i~~~~~~~~~piilvgn  113 (168)
T d2gjsa1          44 DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV----------TDKGSFEKASELRVQLRRARQTDDVPIILVGN  113 (168)
T ss_dssp             TTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHCC--CCCEEEEEE
T ss_pred             cccccceeeeecccccccceecccchhhhhhhceeccc----------cccccccccccccchhhcccccccceEEEeec
Confidence            66778999999999999999999999999999999998          46678888888888876654556789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ....++..|.. .               ..+.+++|||+++.||+++|+.
T Consensus       114 K~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~e~Sak~~~~v~~~f~~  156 (168)
T d2gjsa1         114 KSDLVRSRE---------------------VSVDEGRACAV-V---------------FDCKFIETSAALHHNVQALFEG  156 (168)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHH-H---------------HTSEEEECBTTTTBSHHHHHHH
T ss_pred             ccchhhhcc---------------------hhHHHHHHHHH-h---------------cCCEEEEEeCCCCcCHHHHHHH
Confidence            999976432                     22344444311 1               2256789999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +++.|+.+
T Consensus       157 l~~~i~~~  164 (168)
T d2gjsa1         157 VVRQIRLR  164 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988765

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.92  E-value=7e-25  Score=187.19  Aligned_cols=132  Identities=17%  Similarity=0.302  Sum_probs=104.5

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .+|.|+.....      ....+.+.+||++|++.++..|..++++++++|||+|+          ++..++..+..++..
T Consensus        41 ~~t~~~~~~~~------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~----------s~~~~~~~~~~~l~~  104 (173)
T d1e0sa_          41 IPTVGFNVETV------TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDC----------ADRDRIDEARQELHR  104 (173)
T ss_dssp             EEETTEEEEEE------EETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEET----------TCGGGHHHHHHHHHH
T ss_pred             cceeeeeEEEe------eccceeeEEecCCCcchhhhHHHhhhcccceEEEEEec----------ccchhHHHHHHHHHH
Confidence            57788887777      77889999999999999999999999999999999998          456788888889999


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      .++++...++|++|++||+|+.++.                       ...+....+.   ...     .   ..+.+.+
T Consensus       105 ~~~~~~~~~~piiiv~NK~Dl~~~~-----------------------~~~~i~~~~~---~~~-----~---~~~~~~~  150 (173)
T d1e0sa_         105 IINDREMRDAIILIFANKQDLPDAM-----------------------KPHEIQEKLG---LTR-----I---RDRNWYV  150 (173)
T ss_dssp             HHTSGGGTTCEEEEEEECTTSTTCC-----------------------CHHHHHHHTT---GGG-----C---CSSCEEE
T ss_pred             Hhhhcccccceeeeeeecccccccc-----------------------cHHHHHHHHH---HHH-----H---HhCCCEE
Confidence            8888777889999999999996431                       1111111110   000     1   2456888


Q ss_pred             EEeeccChhhHHHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                      +++||++|+||.++|++|.+.+
T Consensus       151 ~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         151 QPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHC
T ss_pred             EEeeCCCCcCHHHHHHHHHHhc
Confidence            9999999999999999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.92  E-value=5.7e-25  Score=187.80  Aligned_cols=132  Identities=23%  Similarity=0.347  Sum_probs=102.0

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .++.|+....+      ..+++.+.+||++|++.++..|..|+++++++|+|+|+          ++..++.++..++..
T Consensus        45 ~~~~~~~~~~i------~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~----------~d~~s~~~~~~~~~~  108 (176)
T d1fzqa_          45 TPTQGFNIKSV------QSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS----------ADRKRFEETGQELTE  108 (176)
T ss_dssp             EEETTEEEEEE------EETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET----------TCGGGHHHHHHHHHH
T ss_pred             eeeeeeeEEEe------ccCCeeEeEeeccccccchhHHHHHhhccceeEEeecc----------ccccchhhhhhhhhh
Confidence            35667766666      66789999999999999999999999999999999998          456788888888888


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +.......++|++|++||+|+..+.                       ......+.+..   .     ..   ..+.+.+
T Consensus       109 ~~~~~~~~~~pillv~nK~Dl~~~~-----------------------~~~~~~~~~~~---~-----~~---~~~~~~~  154 (176)
T d1fzqa_         109 LLEEEKLSCVPVLIFANKQDLLTAA-----------------------PASEIAEGLNL---H-----TI---RDRVWQI  154 (176)
T ss_dssp             HTTCGGGTTCCEEEEEECTTSTTCC-----------------------CHHHHHHHTTG---G-----GC---CSSCEEE
T ss_pred             hhhhhccCCCeEEEEEEeccccccc-----------------------cHHHHHHHHHH---H-----HH---HhcCCEE
Confidence            8777666789999999999996531                       11111111000   0     01   2456788


Q ss_pred             EEeeccChhhHHHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                      ++|||++|+||+++|+++++.|
T Consensus       155 ~~~SA~tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         155 QSCSALTGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             EECCTTTCTTHHHHHHHHHHTC
T ss_pred             EEEeCCCCCCHHHHHHHHHhcC
Confidence            9999999999999999998753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-24  Score=185.85  Aligned_cols=120  Identities=19%  Similarity=0.180  Sum_probs=93.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+|||+||+.++..|..|+++++++|+|+|++          +..++.....++..+.+. ....+|++|++|
T Consensus        50 ~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgn  118 (171)
T d2ew1a1          50 NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDIT----------CEESFRCLPEWLREIEQY-ASNKVITVLVGN  118 (171)
T ss_dssp             TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred             CCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeeecc----------cchhhhhhhhhhhhhccc-ccccccEEEEEe
Confidence            567789999999999999999999999999999999984          556677777777766543 234689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+++.                     ...+++..|...                ..+.+++|||++|+||+++|.+
T Consensus       119 K~D~~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~SAktg~gV~e~f~~  161 (171)
T d2ew1a1         119 KIDLAERRE---------------------VSQQRAEEFSEA----------------QDMYYLETSAKESDNVEKLFLD  161 (171)
T ss_dssp             CGGGGGGCS---------------------SCHHHHHHHHHH----------------HTCCEEECCTTTCTTHHHHHHH
T ss_pred             ecccccccc---------------------hhhhHHHHHHHh----------------CCCEEEEEccCCCCCHHHHHHH
Confidence            999865421                     233445444221                1245788999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      ++..++..
T Consensus       162 l~~~l~~~  169 (171)
T d2ew1a1         162 LACRLISE  169 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.7e-24  Score=183.71  Aligned_cols=120  Identities=13%  Similarity=0.154  Sum_probs=95.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|+          ++..++++...|+..+......+++|++||+|
T Consensus        47 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgn  116 (167)
T d1c1ya_          47 DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSI----------TAQSTFNDLQDLREQILRVKDTEDVPMILVGN  116 (167)
T ss_dssp             SSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEE
T ss_pred             eeeEEEeccccccCcccccccccccccccceeEEeeec----------cchhhhHhHHHHHHHHHHhcCCCCCeEEEEEE
Confidence            56779999999999999999999999999999999998          46678888888888876654456789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..+.. ++              ..+.+++|||++|+||.++|++
T Consensus       117 K~Dl~~~~~---------------------~~~~~~~~~~~-~~--------------~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_         117 KCDLEDERV---------------------VGKEQGQNLAR-QW--------------CNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHH-HT--------------TSCEEEECBTTTTBSHHHHHHH
T ss_pred             ecCcccccc---------------------cchhHHHHHHH-Hh--------------CCCEEEEEcCCCCcCHHHHHHH
Confidence            999975432                     22344444322 11              2366789999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +++.|.
T Consensus       161 l~~~i~  166 (167)
T d1c1ya_         161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998774

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=2e-24  Score=183.76  Aligned_cols=119  Identities=17%  Similarity=0.269  Sum_probs=91.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+++|||+||+.++.+|..|+++++++|+|+|++          +.+++.....++..+.. ....+.|+++++|
T Consensus        50 ~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~----------~~~s~~~~~~~~~~~~~-~~~~~~~iivv~n  118 (169)
T d3raba_          50 NDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT----------NEESFNAVQDWSTQIKT-YSWDNAQVLLVGN  118 (169)
T ss_dssp             TTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETT----------CHHHHHTHHHHHHHHHH-HCCSCCEEEEEEE
T ss_pred             ecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECc----------cchhhhhhhhhhhhhhc-ccCCcceEEEEEe
Confidence            556789999999999999999999999999999999984          45566666666655533 2345789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+.+.+.                     ...+++.++...                ..+.+++|||++++||+++|++
T Consensus       119 K~D~~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~e~Sak~g~gv~e~f~~  161 (169)
T d3raba_         119 KCDMEDERV---------------------VSSERGRQLADH----------------LGFEFFEASAKDNINVKQTFER  161 (169)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHHH----------------HTCEEEECBTTTTBSHHHHHHH
T ss_pred             ecccccccc---------------------cchhhhHHHHHH----------------cCCEEEEecCCCCcCHHHHHHH
Confidence            999865432                     223444444221                1256889999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +++.|++
T Consensus       162 l~~~i~e  168 (169)
T d3raba_         162 LVDVICE  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9998875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.4e-24  Score=179.60  Aligned_cols=119  Identities=13%  Similarity=0.077  Sum_probs=95.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++.++..|+++++++|+|+|+          ++.+++.....|+..+.+.....++|++|++|
T Consensus        48 ~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilvgn  117 (167)
T d1xtqa1          48 NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSV----------TSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN  117 (167)
T ss_dssp             TTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEET----------TCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEE
T ss_pred             CcEEEEeeecccccccccccccchhhhhhhhhhhhccc----------chhhhhhhhhhhhhhhhhcccccccceeeecc
Confidence            67788999999999999999999999999999999998          46777877778887776654445789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++.+|.. +               ..+.+++|||+++.||+++|..
T Consensus       118 K~Dl~~~r~---------------------v~~~~~~~~a~-~---------------~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1         118 KKDLHMERV---------------------ISYEEGKALAE-S---------------WNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHH-H---------------HTCEEEECCTTCHHHHHHHHHH
T ss_pred             ccccccccc---------------------hhHHHHHHHHH-H---------------cCCEEEEEecCCCCCHHHHHHH
Confidence            999965532                     23455554422 1               1255789999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +...+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988775

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2e-24  Score=185.04  Aligned_cols=131  Identities=14%  Similarity=0.204  Sum_probs=95.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +.+.+.+.+||++|++.++..|..||++++++|+|+|+          ++..++++...++...+... .+++|++|++|
T Consensus        46 ~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~Sf~~~~~~~~~~~~~~-~~~~piilvgn  114 (177)
T d1kmqa_          46 DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHF-CPNVPIILVGN  114 (177)
T ss_dssp             TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH-STTSCEEEEEE
T ss_pred             cccceeeeccccCccchhcccchhhcccchhhhhhccc----------chhHHHHHHHHHHHHHHHHh-CCCCceEEeee
Confidence            56778999999999999999999999999999999998          45677877777776665532 35799999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+...+.......      ...   ......+++..+..+ +              ..+.+++|||+++.||+++|+.
T Consensus       115 K~Dl~~~~~~~~~~~------~~~---~~~v~~~e~~~~a~~-~--------------~~~~~~E~SAkt~~gi~e~F~~  170 (177)
T d1kmqa_         115 KKDLRNDEHTRRELA------KMK---QEPVKPEEGRDMANR-I--------------GAFGYMECSAKTKDGVREVFEM  170 (177)
T ss_dssp             CGGGTTCHHHHHHHH------HTT---CCCCCHHHHHHHHHH-T--------------TCSEEEECCTTTCTTHHHHHHH
T ss_pred             cccccchhhHHHHHH------Hhh---cccccHHHHHHHHHH-c--------------CCcEEEEecCCCCcCHHHHHHH
Confidence            999976432110000      000   001345555554221 1              1256789999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +++.++
T Consensus       171 i~~~~l  176 (177)
T d1kmqa_         171 ATRAAL  176 (177)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998876

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2e-24  Score=184.54  Aligned_cols=121  Identities=16%  Similarity=0.168  Sum_probs=96.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..|+++++++|+|+|+          ++..++.....|+..+.......++|++||+|
T Consensus        50 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgn  119 (173)
T d2fn4a1          50 DGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAI----------NDRQSFNEVGKLFTQILRVKDRDDFPVVLVGN  119 (173)
T ss_dssp             TTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred             CCeeeeeeccccccccccccccchhhccceeeeeeccc----------ccccccchhhhhhHHHHHHhccCCCceEEEEE
Confidence            66778999999999999999999999999999999998          46677777777877776544446789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..|...                ..+.+++|||++++||+++|+.
T Consensus       120 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~e~Sak~g~gv~e~f~~  162 (173)
T d2fn4a1         120 KADLESQRQ---------------------VPRSEASAFGAS----------------HHVAYFEASAKLRLNVDEAFEQ  162 (173)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECBTTTTBSHHHHHHH
T ss_pred             eechhhccc---------------------cchhhhhHHHHh----------------cCCEEEEEeCCCCcCHHHHHHH
Confidence            999965432                     223444444221                2356789999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.|.+.
T Consensus       163 l~~~i~k~  170 (173)
T d2fn4a1         163 LVRAVRKY  170 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.90  E-value=6.5e-24  Score=180.48  Aligned_cols=120  Identities=18%  Similarity=0.185  Sum_probs=92.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..+..++++++++|+|+|+          ++..++.....|+..+......+++|++||+|
T Consensus        48 ~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piiivgn  117 (168)
T d1u8za_          48 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSI----------TEMESFAATADFREQILRVKEDENVPFLLVGN  117 (168)
T ss_dssp             TTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEE
T ss_pred             ccccccccccccccccchhhhhhhcccccceeEEEeec----------cchhhhhhHHHHHHHHHHhhCCCCCcEEEEec
Confidence            66789999999999999999999999999999999998          45677777778887776544456899999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+.+.+.                     ...+++.+|...                ..+.+++|||++|.||+++|.+
T Consensus       118 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~e~Sak~g~gv~e~f~~  160 (168)
T d1u8za_         118 KSDLEDKRQ---------------------VSVEEAKNRADQ----------------WNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHHH----------------HTCEEEECCTTTCTTHHHHHHH
T ss_pred             ccccccccc---------------------ccHHHHHHHHHH----------------cCCeEEEEcCCCCcCHHHHHHH
Confidence            999865431                     234555554222                1256789999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.|+.
T Consensus       161 l~~~i~~  167 (168)
T d1u8za_         161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            9988764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-23  Score=179.32  Aligned_cols=126  Identities=16%  Similarity=0.232  Sum_probs=98.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++|++.++..|..++++++++|+|+|+          ++..++.+...++..+.+. ...+.|++|++|
T Consensus        48 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~sf~~~~~~~~~~~~~-~~~~~piilv~n  116 (173)
T d2a5ja1          48 DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI----------TRRETFNHLTSWLEDARQH-SSSNMVIMLIGN  116 (173)
T ss_dssp             TTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred             eeeEEEEEeecccCccchhhHHHHHhhccCEEEEEEee----------cChHHHHhHHHHHHHHHHh-CCCCCeEEEEec
Confidence            55678999999999999999999999999999999998          5677888888888777653 235789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+...+.                     ...+++..|...                ..+.+++|||++|.||+++|.+
T Consensus       117 K~D~~~~~~---------------------~~~~~~~~~a~~----------------~~~~~~e~Sa~tg~~V~e~f~~  159 (173)
T d2a5ja1         117 KSDLESRRD---------------------VKREEGEAFARE----------------HGLIFMETSAKTACNVEEAFIN  159 (173)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHHH----------------HTCEEEEECTTTCTTHHHHHHH
T ss_pred             CCchhhhhh---------------------hHHHHHHHHHHH----------------cCCEEEEecCCCCCCHHHHHHH
Confidence            999865532                     223444444221                1256789999999999999999


Q ss_pred             HHHHHHHhhhhhcCCC
Q 018283          343 VDETLRRRHLFEAGLL  358 (358)
Q Consensus       343 i~~~i~~~~~~~~~l~  358 (358)
                      +.+.|+++  .+.|||
T Consensus       160 i~~~i~~~--~~~~~~  173 (173)
T d2a5ja1         160 TAKEIYRK--IQQGLF  173 (173)
T ss_dssp             HHHHHHHH--HHTTCC
T ss_pred             HHHHHHHH--HHccCC
Confidence            99999864  344443

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.2e-24  Score=180.58  Aligned_cols=118  Identities=14%  Similarity=0.217  Sum_probs=94.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..+..|+++++++|+|+|+          ++..++.+...|+..+.......++|++||||
T Consensus        47 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilvgn  116 (167)
T d1kaoa_          47 DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSL----------VNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN  116 (167)
T ss_dssp             TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEE
T ss_pred             CcceEeeccccCCCccccccchHHHhhcccceeeeeee----------cchhhhhhhhchhhhhhhhccCCCCCEEEEEE
Confidence            56678999999999999999999999999999999998          56788888888888876654456899999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+...+.                     ...+++..+... +               .+.+++|||++|.||+++|+.
T Consensus       117 K~Dl~~~~~---------------------~~~~~~~~~~~~-~---------------~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_         117 KVDLESERE---------------------VSSSEGRALAEE-W---------------GCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHHH-H---------------TSCEEEECTTCHHHHHHHHHH
T ss_pred             ccchhhccc---------------------chHHHHHHHHHH-c---------------CCeEEEECCCCCcCHHHHHHH
Confidence            999976432                     223444444221 1               245789999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      +++.|
T Consensus       160 i~~~i  164 (167)
T d1kaoa_         160 IVRQM  164 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98776

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-23  Score=178.77  Aligned_cols=121  Identities=14%  Similarity=0.154  Sum_probs=89.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.+. ....|+++++++|+|+|++          +..++.....++..+.......+.|++||||
T Consensus        46 ~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilvgn  114 (168)
T d2atva1          46 DDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDIT----------DRGSFEEVLPLKNILDEIKKPKNVTLILVGN  114 (168)
T ss_dssp             TTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             cccceEEEEeecccccccc-cchhhhcccccceeecccC----------CccchhhhhhhcccccccccccCcceeeecc
Confidence            5677999999999998875 5667999999999999984          5566666555554443333345789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh-hHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK-LVKKTFK  341 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~-ni~~vf~  341 (358)
                      |+|+..++.                     ...+++.++.. +               ..+.+++|||+++. ||+++|.
T Consensus       115 K~Dl~~~r~---------------------V~~~e~~~~a~-~---------------~~~~~~e~Saktg~gnV~e~F~  157 (168)
T d2atva1         115 KADLDHSRQ---------------------VSTEEGEKLAT-E---------------LACAFYECSACTGEGNITEIFY  157 (168)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHH-H---------------HTSEEEECCTTTCTTCHHHHHH
T ss_pred             chhhhhhcc---------------------CcHHHHHHHHH-H---------------hCCeEEEEccccCCcCHHHHHH
Confidence            999965432                     23455555422 1               12568899999998 6999999


Q ss_pred             HHHHHHHHhh
Q 018283          342 LVDETLRRRH  351 (358)
Q Consensus       342 ~i~~~i~~~~  351 (358)
                      .+++.|.++.
T Consensus       158 ~l~~~i~~~r  167 (168)
T d2atva1         158 ELCREVRRRR  167 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999988764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=5.3e-24  Score=181.22  Aligned_cols=121  Identities=17%  Similarity=0.236  Sum_probs=96.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..+..|+++++++|+|+|+          ++.+++.....|+..+.+.....+.|++|++|
T Consensus        48 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~----------~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgn  117 (169)
T d1x1ra1          48 DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSV----------TDKASFEHVDRFHQLILRVKDRESFPMILVAN  117 (169)
T ss_dssp             TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred             ccccccccccccccccccccchhhhhhhccEEEEeccc----------ccchhhhccchhhHHHHhhccccCccEEEEec
Confidence            66789999999999999999999999999999999998          46677777777777776544445789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh-hHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK-LVKKTFK  341 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~-ni~~vf~  341 (358)
                      |+|+.+.+.                     ...+++.+|..+                ..+.+++|||+++. ||+++|.
T Consensus       118 K~Dl~~~~~---------------------v~~e~~~~~~~~----------------~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1         118 KVDLMHLRK---------------------VTRDQGKEMATK----------------YNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             CTTCSTTCC---------------------SCHHHHHHHHHH----------------HTCCEEEEBCSSSCBSHHHHHH
T ss_pred             ccchhhhce---------------------eehhhHHHHHHH----------------cCCEEEEEcCCCCCcCHHHHHH
Confidence            999965431                     234566655332                12457899999876 9999999


Q ss_pred             HHHHHHHHh
Q 018283          342 LVDETLRRR  350 (358)
Q Consensus       342 ~i~~~i~~~  350 (358)
                      .+.+.|+++
T Consensus       161 ~l~~~i~~~  169 (169)
T d1x1ra1         161 DLVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999988763

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.8e-23  Score=178.22  Aligned_cols=122  Identities=16%  Similarity=0.208  Sum_probs=97.3

Q ss_pred             ccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 018283          184 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK  263 (358)
Q Consensus       184 ~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK  263 (358)
                      ...+.+.+||++||+.++..|..|+++++++|+|+|+          ++..++.....|+..+..+....+.|++||+||
T Consensus        61 ~~~~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK  130 (186)
T d2f7sa1          61 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDL----------TSQQSFLNVRNWMSQLQANAYCENPDIVLIGNK  130 (186)
T ss_dssp             EEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEET----------TCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEEC
T ss_pred             cceEEeccccCCcchhhHHHHHHHHhcCCEEEEEEec----------cccccceeeeeccchhhhhccCCCceEEEEeee
Confidence            3457899999999999999999999999999999998          456778887888877766655667899999999


Q ss_pred             CCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          264 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       264 ~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                      .|+.+++.                     ...+++.+|..+                ..+.+++|||++++||+++|+++
T Consensus       131 ~Dl~~~~~---------------------v~~~e~~~~~~~----------------~~~~~~e~Sak~~~~i~e~f~~l  173 (186)
T d2f7sa1         131 ADLPDQRE---------------------VNERQARELADK----------------YGIPYFETSAATGQNVEKAVETL  173 (186)
T ss_dssp             TTCGGGCC---------------------SCHHHHHHHHHH----------------TTCCEEEEBTTTTBTHHHHHHHH
T ss_pred             ccchhhhc---------------------chHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHHH
Confidence            99976432                     234555554221                12567899999999999999999


Q ss_pred             HHHHHHhhh
Q 018283          344 DETLRRRHL  352 (358)
Q Consensus       344 ~~~i~~~~~  352 (358)
                      .+.|+++..
T Consensus       174 ~~~i~~k~~  182 (186)
T d2f7sa1         174 LDLIMKRME  182 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999986543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.3e-24  Score=180.54  Aligned_cols=131  Identities=17%  Similarity=0.175  Sum_probs=95.8

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.|+.........  +...+.+.+||++|++.++..|..|+++++++|+|+|++          +.+++++...|+..
T Consensus        33 ~~Ti~~~~~~~~~~~--~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~Sf~~~~~~~~~  100 (170)
T d1i2ma_          33 VATLGVEVHPLVFHT--NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVT----------SRVTYKNVPNWHRD  100 (170)
T ss_dssp             EEETTEEEEEEEECB--TTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETT----------SGGGGTTHHHHHHH
T ss_pred             ccceecccccccccc--ccccccccccccccccccceecchhcccccchhhccccc----------cccccchhHHHHHH
Confidence            467776543222111  567899999999999999999999999999999999985          44555556666666


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      +...  .+++|++||+||+|+..++...                   ..    ..+     .           ....+.+
T Consensus       101 ~~~~--~~~~piilvgnK~Dl~~~~~~~-------------------~~----~~~-----~-----------~~~~~~~  139 (170)
T d1i2ma_         101 LVRV--CENIPIVLCGNKVDIKDRKVKA-------------------KS----IVF-----H-----------RKKNLQY  139 (170)
T ss_dssp             HHHH--HCSCCEEEEEECCCCSCSCCTT-------------------TS----HHH-----H-----------SSCSSEE
T ss_pred             Hhhc--cCCCceeeecchhhhhhhhhhh-------------------HH----HHH-----H-----------HHcCCEE
Confidence            5443  2478999999999986543210                   11    111     0           1234678


Q ss_pred             EEeeccChhhHHHHHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~~i~~  349 (358)
                      ++|||+++.||+++|.++++.|++
T Consensus       140 ~e~Sak~~~~v~e~f~~l~~~l~~  163 (170)
T d1i2ma_         140 YDISAKSNYNFEKPFLWLARKLIG  163 (170)
T ss_dssp             EEEBTTTTBTTTHHHHHHHHHHHT
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHcc
Confidence            999999999999999999999975

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.4e-24  Score=178.88  Aligned_cols=117  Identities=15%  Similarity=0.167  Sum_probs=91.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++||+.++..|..++++++++|+|+|+          ++..++.....++..+.+ ......|+++++|
T Consensus        49 ~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~s~~~~~~~~~~~~~-~~~~~~~iilvgn  117 (166)
T d1z0fa1          49 SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDI----------TRRSTYNHLSSWLTDARN-LTNPNTVIILIGN  117 (166)
T ss_dssp             TTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEET----------TCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEE
T ss_pred             CCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEecc----------CchHHHHHHHHHHHHHHh-hccccceEEEEcc
Confidence            66778999999999999999999999999999999998          455667666777766644 3345789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+...+.                     ...+++.++...                ..+.+++|||++++||+++|++
T Consensus       118 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~e~Saktg~~v~e~f~~  160 (166)
T d1z0fa1         118 KADLEAQRD---------------------VTYEEAKQFAEE----------------NGLLFLEASAKTGENVEDAFLE  160 (166)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred             cccchhhcc---------------------cHHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence            999864321                     223455554221                1256889999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      +.+.|
T Consensus       161 i~~~i  165 (166)
T d1z0fa1         161 AAKKI  165 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98876

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.8e-24  Score=182.35  Aligned_cols=119  Identities=15%  Similarity=0.145  Sum_probs=86.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..||++++++|+|+|+          ++.+++.....|++.+... .....|++|++|
T Consensus        48 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgn  116 (167)
T d1z08a1          48 GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDI----------TDEDSFQKVKNWVKELRKM-LGNEICLCIVGN  116 (167)
T ss_dssp             SSCEEEEEEEECCCC-------CCSSTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEE
T ss_pred             CCccceeeeeccCCcceecccchhhccCCceeEEEEeC----------CchhHHHhhhhhhhhcccc-cccccceeeecc
Confidence            56678999999999999999999999999999999998          4667777777777665432 234679999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++.+|..+                ..+.+++|||+++.||+++|.+
T Consensus       117 K~Dl~~~~~---------------------v~~~e~~~~a~~----------------~~~~~~e~Sak~~~~v~e~F~~  159 (167)
T d1z08a1         117 KIDLEKERH---------------------VSIQEAESYAES----------------VGAKHYHTSAKQNKGIEELFLD  159 (167)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEEEBTTTTBSHHHHHHH
T ss_pred             ccccccccc---------------------cchHHHHHHHHH----------------cCCeEEEEecCCCcCHHHHHHH
Confidence            999976532                     234555554221                2256789999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +++.|++
T Consensus       160 l~~~i~~  166 (167)
T d1z08a1         160 LCKRMIE  166 (167)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9998864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.7e-24  Score=182.83  Aligned_cols=131  Identities=17%  Similarity=0.166  Sum_probs=95.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++||+.++..|..||++++++|+|+|+          ++.+++++...++...++.. ..++|++||+|
T Consensus        53 ~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~----------t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgn  121 (185)
T d2atxa1          53 GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSV----------VNPASFQNVKEEWVPELKEY-APNVPFLLIGT  121 (185)
T ss_dssp             SSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH-STTCCEEEEEE
T ss_pred             CCceEEeecccccccchhhhhhhhcccccceeeecccc----------chHHHHHHHHHHHHHHHHhc-CCCCCeeEeee
Confidence            55678999999999999999999999999999999998          46677887777777766532 45799999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+||.+..-........    .     .-....+++.++.. ++              ..+.+++|||+++.||+++|+.
T Consensus       122 K~Dl~~~~~~~~~~~~~----~-----~r~v~~~~~~~~a~-~~--------------~~~~~~E~SAk~~~gv~e~F~~  177 (185)
T d2atxa1         122 QIDLRDDPKTLARLNDM----K-----EKPICVEQGQKLAK-EI--------------GACCYVECSALTQKGLKTVFDE  177 (185)
T ss_dssp             CTTSTTCHHHHHHHTTT----T-----CCCCCHHHHHHHHH-HH--------------TCSCEEECCTTTCTTHHHHHHH
T ss_pred             ccccccchhhhhhhhhc----c-----cccccHHHHHHHHH-Hc--------------CCCEEEEecCCCCcCHHHHHHH
Confidence            99997532110000000    0     00134566665422 11              1245788999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +++.|+
T Consensus       178 li~~il  183 (185)
T d2atxa1         178 AIIAIL  183 (185)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            998875

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.9e-23  Score=178.29  Aligned_cols=120  Identities=14%  Similarity=0.192  Sum_probs=80.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.+...|..|+++++++|+|+|++          +..++.....++..+.+ ....+.|+++++|
T Consensus        51 ~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~-~~~~~~~iilv~~  119 (173)
T d2fu5c1          51 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDIT----------NEKSFDNIRNWIRNIEE-HASADVEKMILGN  119 (173)
T ss_dssp             TTEEEEEEEEEC---------CCTTTTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHH-HSCTTCEEEEEEE
T ss_pred             CCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECC----------ChhhHHHHHHHHHHhhh-hccCCceEEEEEe
Confidence            566789999999999999999999999999999999984          55677777777777644 3346789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+...+.                     ...+++..+...                ..+.++++||++++||.++|++
T Consensus       120 k~D~~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~e~Sa~~g~gv~e~f~~  162 (173)
T d2fu5c1         120 KCDVNDKRQ---------------------VSKERGEKLALD----------------YGIKFMETSAKANINVENAFFT  162 (173)
T ss_dssp             C--CCSCCC---------------------SCHHHHHHHHHH----------------HTCEEEECCC---CCHHHHHHH
T ss_pred             cccchhhcc---------------------cHHHHHHHHHHh----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence            999864321                     223444443221                2366889999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +++.|..+
T Consensus       163 l~~~i~~k  170 (173)
T d2fu5c1         163 LARDIKAK  170 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4.6e-24  Score=180.48  Aligned_cols=117  Identities=18%  Similarity=0.253  Sum_probs=91.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++|++.+...|..|+++++++++|+|++          +..+++....|+..+...  .+++|++||+|
T Consensus        47 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~--~~~~~iilVgn  114 (164)
T d1z2aa1          47 NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTT----------DRESFEAISSWREKVVAE--VGDIPTALVQN  114 (164)
T ss_dssp             TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETT----------CHHHHHTHHHHHHHHHHH--HCSCCEEEEEE
T ss_pred             cCceeeeeeeccCCccchhhhhhhhhccCceEEEEEecc----------chhhhhhccccccccccc--CCCceEEEeec
Confidence            556789999999999999999999999999999999984          556666666677666542  24689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+++.                     ...+++.+|..+                ..+.+++|||+++.||+++|+.
T Consensus       115 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~e~Sak~g~~v~e~f~~  157 (164)
T d1z2aa1         115 KIDLLDDSC---------------------IKNEEAEGLAKR----------------LKLRFYRTSVKEDLNVSEVFKY  157 (164)
T ss_dssp             CGGGGGGCS---------------------SCHHHHHHHHHH----------------HTCEEEECBTTTTBSSHHHHHH
T ss_pred             cCCccccee---------------------eeehhhHHHHHH----------------cCCEEEEeccCCCcCHHHHHHH
Confidence            999976532                     223445444221                1256789999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +++.++
T Consensus       158 l~~~~l  163 (164)
T d1z2aa1         158 LAEKHL  163 (164)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999886

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.1e-23  Score=177.91  Aligned_cols=117  Identities=23%  Similarity=0.201  Sum_probs=90.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++||+.++..|..|+++++++|+|+|+          ++..++.+...|+..+.... ..++|++||+|
T Consensus        45 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgn  113 (164)
T d1yzqa1          45 EDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDI----------TNVNSFQQTTKWIDDVRTER-GSDVIIMLVGN  113 (164)
T ss_dssp             SSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEE
T ss_pred             CCCceeeeecccCCcchhccchHHHhhccceEEEeecc----------ccccchhhhHhhHHHHHHhc-CCCceEEEEec
Confidence            55678999999999999999999999999999999998          45666777777776665432 24789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+.+.+.                     ...+++.++...                ..+.+++|||++|+||+++|++
T Consensus       114 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~e~SAk~g~~v~e~f~~  156 (164)
T d1yzqa1         114 KTDLADKRQ---------------------VSIEEGERKAKE----------------LNVMFIETSAKAGYNVKQLFRR  156 (164)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred             ccchhhhhh---------------------hhHHHHHHHHHH----------------cCCEEEEecCCCCcCHHHHHHH
Confidence            999965432                     233444444211                2256889999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      |++.|
T Consensus       157 i~~~l  161 (164)
T d1yzqa1         157 VAAAL  161 (164)
T ss_dssp             HHHHS
T ss_pred             HHHhh
Confidence            98765

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.5e-23  Score=177.78  Aligned_cols=117  Identities=13%  Similarity=0.126  Sum_probs=89.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ......+.+||++|++.++.+|..|+++++++|+|+|++          +..++.....|+..+.. ....+.|++||+|
T Consensus        49 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~-~~~~~~~iilvgn  117 (167)
T d1z0ja1          49 QNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDIT----------KEETFSTLKNWVRELRQ-HGPPSIVVAIAGN  117 (167)
T ss_dssp             TTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHH-HSCTTSEEEEEEE
T ss_pred             cccccceeeeecCCchhhhHHHHHHHhhccceEEEeeec----------hhhhhhhHHHhhhhhhh-ccCCcceEEEecc
Confidence            456678899999999999999999999999999999984          55666666666655533 2345789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+++.                     ...+++.+|..+                ..+.+++|||+++.||+++|.+
T Consensus       118 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~e~SAk~~~nV~e~f~~  160 (167)
T d1z0ja1         118 KCDLTDVRE---------------------VMERDAKDYADS----------------IHAIFVETSAKNAININELFIE  160 (167)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECBTTTTBSHHHHHHH
T ss_pred             cchhccccc---------------------hhHHHHHHHHHH----------------cCCEEEEEecCCCCCHHHHHHH
Confidence            999965432                     233455544221                1256789999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      |++.|
T Consensus       161 l~~~i  165 (167)
T d1z0ja1         161 ISRRI  165 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.1e-23  Score=179.16  Aligned_cols=120  Identities=18%  Similarity=0.124  Sum_probs=90.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC-CCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~-~~~~~~~iilv~  261 (358)
                      +...+.+.+||++|++.++..+..|+++++++|+|+|+          ++.+++.....|+..+... ....++|++|||
T Consensus        46 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~~piilVg  115 (171)
T d2erxa1          46 DKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSI----------TSRQSLEELKPIYEQICEIKGDVESIPIMLVG  115 (171)
T ss_dssp             TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEET----------TCHHHHHTTHHHHHHHHHHHC---CCCEEEEE
T ss_pred             ccccceeccccccccccccccccccccceeEEEEEeec----------ccccchhcccchhhhhhhhhccCCCCcEEEEe
Confidence            56778999999999999999999999999999999998          4566676767777665432 234578999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK  341 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~  341 (358)
                      ||+|+..++.                     ...+++.+|.. .               ..+.+++|||++++||+++|+
T Consensus       116 nK~Dl~~~~~---------------------v~~~e~~~~~~-~---------------~~~~~~e~Sak~~~~v~e~f~  158 (171)
T d2erxa1         116 NKCDESPSRE---------------------VQSSEAEALAR-T---------------WKCAFMETSAKLNHNVKELFQ  158 (171)
T ss_dssp             ECGGGGGGCC---------------------SCHHHHHHHHH-H---------------HTCEEEECBTTTTBSHHHHHH
T ss_pred             eccccccccc---------------------ccHHHHHHHHH-H---------------cCCeEEEEcCCCCcCHHHHHH
Confidence            9999865432                     22345554422 1               125688999999999999999


Q ss_pred             HHHHHHHH
Q 018283          342 LVDETLRR  349 (358)
Q Consensus       342 ~i~~~i~~  349 (358)
                      .+.+.+.+
T Consensus       159 ~l~~~~~~  166 (171)
T d2erxa1         159 ELLNLEKR  166 (171)
T ss_dssp             HHHHTCCS
T ss_pred             HHHHHHHH
Confidence            98876643

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.5e-23  Score=177.50  Aligned_cols=120  Identities=14%  Similarity=0.168  Sum_probs=92.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +.....+.+||++|++.+..+|..|+++++++|+|+|++          +..++.....++..+... ...+.|+++++|
T Consensus        50 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~piivv~n  118 (174)
T d2bmea1          50 GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT----------SRETYNALTNWLTDARML-ASQNIVIILCGN  118 (174)
T ss_dssp             TTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred             cCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEecc----------cchhHHHHhhhhcccccc-cCCceEEEEEEe
Confidence            567789999999999999999999999999999999984          456666666666666442 235799999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+.+.++..                ...+.+++|||++++||+++|.+
T Consensus       119 K~D~~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~e~Sak~~~gi~e~f~~  161 (174)
T d2bmea1         119 KKDLDADRE---------------------VTFLEASRFAQ----------------ENELMFLETSALTGENVEEAFVQ  161 (174)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHH----------------HTTCEEEECCTTTCTTHHHHHHH
T ss_pred             cccccchhc---------------------hhhhHHHHHHH----------------hCCCEEEEeeCCCCcCHHHHHHH
Confidence            999865421                     12233333311                12367899999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.++++
T Consensus       162 l~~~i~~~  169 (174)
T d2bmea1         162 CARKILNK  169 (174)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.9e-23  Score=181.69  Aligned_cols=120  Identities=19%  Similarity=0.257  Sum_probs=92.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+|||+|++.++.+|..||++++++|+|+|+          ++.+++.....++..+.. ....+.|++|++|
T Consensus        51 ~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~----------t~~~s~~~~~~~~~~~~~-~~~~~~~iilv~n  119 (194)
T d2bcgy1          51 DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDV----------TDQESFNGVKMWLQEIDR-YATSTVLKLLVGN  119 (194)
T ss_dssp             TTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHH-HSCTTCEEEEEEE
T ss_pred             eeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeC----------cchhhhhhHhhhhhhhhh-cccCCceEEEEEe
Confidence            56778999999999999999999999999999999998          456777777777666643 3346789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+.+.                     ...+++..+...                ..+.++++||+++.||+++|+.
T Consensus       120 K~D~~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~e~SAk~g~gi~e~f~~  162 (194)
T d2bcgy1         120 KCDLKDKRV---------------------VEYDVAKEFADA----------------NKMPFLETSALDSTNVEDAFLT  162 (194)
T ss_dssp             CTTCTTTCC---------------------SCHHHHHHHHHH----------------TTCCEEECCTTTCTTHHHHHHH
T ss_pred             ccccccccc---------------------hhHHHHhhhhhc----------------cCcceEEEecCcCccHHHHHHH
Confidence            999865321                     223333333211                1245789999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.|.+.
T Consensus       163 l~~~i~~~  170 (194)
T d2bcgy1         163 MARQIKES  170 (194)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988753

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.4e-23  Score=174.78  Aligned_cols=118  Identities=18%  Similarity=0.247  Sum_probs=92.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++|++.++..|..||++++++|+|+|+          ++..++.....++..+.+. ..++.|++|++|
T Consensus        51 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgn  119 (170)
T d1r2qa_          51 DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDI----------TNEESFARAKNWVKELQRQ-ASPNIVIALSGN  119 (170)
T ss_dssp             TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred             cceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEecc----------chhhHHHHHHHHhhhhhhc-cCCCceEEeecc
Confidence            55678999999999999999999999999999999998          4667777777777777553 345799999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++..+..                ...+.+++|||+++.||+++|..
T Consensus       120 K~Dl~~~~~---------------------v~~e~~~~~~~----------------~~~~~~~e~SAk~g~~V~e~f~~  162 (170)
T d1r2qa_         120 KADLANKRA---------------------VDFQEAQSYAD----------------DNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             CGGGGGGCC---------------------SCHHHHHHHHH----------------HTTCEEEECCTTTCTTHHHHHHH
T ss_pred             ccccccccc---------------------ccHHHHHHHHH----------------hcCCEEEEeeCCCCCCHHHHHHH
Confidence            999976532                     22344444321                12367899999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +.+.|.
T Consensus       163 l~~~i~  168 (170)
T d1r2qa_         163 IAKKLP  168 (170)
T ss_dssp             HHHTSC
T ss_pred             HHHHHh
Confidence            988764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.1e-23  Score=177.58  Aligned_cols=120  Identities=12%  Similarity=0.148  Sum_probs=90.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.+...+..++++++++|+|+|+          ++..++.....|+..+.......+.|++|++|
T Consensus        49 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgn  118 (171)
T d2erya1          49 DDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSV----------TDRGSFEEIYKFQRQILRVKDRDEFPMILIGN  118 (171)
T ss_dssp             TTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred             cccccccccccccccccccccccccccccceEEEeecc----------ccccchhhHHHHhHHHHhhcccCCCCEEEEEe
Confidence            66778999999999999999999999999999999998          45667777777777766554455789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..++.                     ...+++.+|...                ..+.+++|||+++.||.++|..
T Consensus       119 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~e~Sak~~~~i~e~f~~  161 (171)
T d2erya1         119 KADLDHQRQ---------------------VTQEEGQQLARQ----------------LKVTYMEASAKIRMNVDQAFHE  161 (171)
T ss_dssp             CTTCTTSCS---------------------SCHHHHHHHHHH----------------TTCEEEECBTTTTBSHHHHHHH
T ss_pred             ccchhhhcc---------------------chHHHHHHHHHH----------------cCCEEEEEcCCCCcCHHHHHHH
Confidence            999865421                     223445444221                1256789999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      +.+.|.+
T Consensus       162 l~~~i~k  168 (171)
T d2erya1         162 LVRVIRK  168 (171)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998854

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.8e-23  Score=175.50  Aligned_cols=120  Identities=18%  Similarity=0.222  Sum_probs=93.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.++..|..++++++++|+|+|+          ++..++.....++..+.+. ..+++|++||||
T Consensus        49 ~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~----------~~~~S~~~~~~~~~~i~~~-~~~~~piilvgn  117 (175)
T d2f9la1          49 DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDI----------AKHLTYENVERWLKELRDH-ADSNIVIMLVGN  117 (175)
T ss_dssp             TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred             CCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEEC----------CCcccchhHHHHHHHHHHh-cCCCCcEEEEEe
Confidence            56778999999999999999999999999999999998          4567777777777777553 235789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+.+++.                     ...+.+..+..                .....+++|||++++||+++|++
T Consensus       118 K~Dl~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~e~Sa~~g~~i~e~f~~  160 (175)
T d2f9la1         118 KSDLRHLRA---------------------VPTDEARAFAE----------------KNNLSFIETSALDSTNVEEAFKN  160 (175)
T ss_dssp             CTTCGGGCC---------------------SCHHHHHHHHH----------------HTTCEEEECCTTTCTTHHHHHHH
T ss_pred             eeccccccc---------------------chHHHHHHhhc----------------ccCceEEEEecCCCcCHHHHHHH
Confidence            999976432                     11222222211                11246789999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.|.+.
T Consensus       161 l~~~i~~~  168 (175)
T d2f9la1         161 ILTEIYRI  168 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.8e-23  Score=176.37  Aligned_cols=120  Identities=15%  Similarity=0.194  Sum_probs=97.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+|||+|++.++..|..|+++++++|+|+|+          ++.+++.....++..+.........|+++++|
T Consensus        52 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~n  121 (177)
T d1x3sa1          52 DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDV----------TRRDTFVKLDNWLNELETYCTRNDIVNMLVGN  121 (177)
T ss_dssp             TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEE
T ss_pred             eccccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEEC----------CCccccccchhhhhhhcccccccceeeEEEee
Confidence            66778999999999999999999999999999999998          45677888888888887665566789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|.....                      ....++.++...                ..+.+++|||++|+||.++|++
T Consensus       122 k~d~~~~~----------------------v~~~~~~~~~~~----------------~~~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1         122 KIDKENRE----------------------VDRNEGLKFARK----------------HSMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             CTTSSSCC----------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred             cccccccc----------------------ccHHHHHHHHHH----------------CCCEEEEEeCCCCCCHHHHHHH
Confidence            99975321                      233445554221                2367889999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+++.
T Consensus       164 l~~~l~~~  171 (177)
T d1x3sa1         164 LVEKIIQT  171 (177)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHccC
Confidence            99888753

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2e-22  Score=171.85  Aligned_cols=119  Identities=18%  Similarity=0.125  Sum_probs=91.6

Q ss_pred             cccceEEEEEecC---CCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEE
Q 018283          183 KKSGEVYRLFDVG---GQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML  259 (358)
Q Consensus       183 ~~~~~~l~i~D~~---Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iil  259 (358)
                      +.+.+.+.+||+.   ||+++  ++..|+++++++|+|+|+          ++..++.+...|+..+.......++|++|
T Consensus        49 ~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~~ilvfd~----------t~~~s~~~~~~~~~~i~~~~~~~~~piil  116 (172)
T d2g3ya1          49 DGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSI----------TDRASFEKASELRIQLRRARQTEDIPIIL  116 (172)
T ss_dssp             TTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSEEEEEEET----------TCHHHHHHHHHHHHHHHTSGGGTTSCEEE
T ss_pred             CCceeeeeeeccccccccccc--cccccccccceeeeeecc----------cccchhhhhhhhhhhhhhccccCCceEEE
Confidence            5667788888865   55544  688899999999999998          46788888888888887765556899999


Q ss_pred             EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283          260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT  339 (358)
Q Consensus       260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v  339 (358)
                      |+||+|+..++.                     ...+++.++.. .               ..+.+++|||++|+||+++
T Consensus       117 vgnK~Dl~~~~~---------------------v~~~~~~~~a~-~---------------~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1         117 VGNKSDLVRCRE---------------------VSVSEGRACAV-V---------------FDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEECTTCGGGCC---------------------SCHHHHHHHHH-H---------------HTCEEEECBTTTTBSHHHH
T ss_pred             Eecccccccccc---------------------ccHHHHHHHHH-H---------------cCCeEEEEeCCCCcCHHHH
Confidence            999999976532                     22344444311 1               1256789999999999999


Q ss_pred             HHHHHHHHHHh
Q 018283          340 FKLVDETLRRR  350 (358)
Q Consensus       340 f~~i~~~i~~~  350 (358)
                      |+.+++.|..+
T Consensus       160 f~~l~~~i~~r  170 (172)
T d2g3ya1         160 FEGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999988653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.8e-22  Score=171.95  Aligned_cols=124  Identities=17%  Similarity=0.243  Sum_probs=81.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHH---cCCCCCCCcEEE
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL---KQPCFEKTSFML  259 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~---~~~~~~~~~iil  259 (358)
                      +...+.+.+||++|++.+...|..|++.++++|+|+|++          +..++.....|+..+.   ......++|++|
T Consensus        48 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~~piil  117 (175)
T d1ky3a_          48 GDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVT----------NASSFENIKSWRDEFLVHANVNSPETFPFVI  117 (175)
T ss_dssp             SSCCEEEEEECCC----------CCSTTCCEEEEEEETT----------CHHHHHTHHHHHHHHHHHHCCSCTTTCCEEE
T ss_pred             CcccccceeeccCCchhhhhHHHHHhhccceEEEEeecc----------cccccchhhhcchhhhhhhhhcccccCcEEE
Confidence            445678999999999999999999999999999999984          4455555555555543   333445789999


Q ss_pred             EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283          260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT  339 (358)
Q Consensus       260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v  339 (358)
                      ++||+|+.+++-.                    ...+++.+|. .++              ..+.+++|||+++.||+++
T Consensus       118 v~nK~Dl~~~~~~--------------------v~~~~~~~~~-~~~--------------~~~~~~e~SA~~g~gv~e~  162 (175)
T d1ky3a_         118 LGNKIDAEESKKI--------------------VSEKSAQELA-KSL--------------GDIPLFLTSAKNAINVDTA  162 (175)
T ss_dssp             EEECTTSCGGGCC--------------------SCHHHHHHHH-HHT--------------TSCCEEEEBTTTTBSHHHH
T ss_pred             Eecccchhhhhcc--------------------hhHHHHHHHH-HHc--------------CCCeEEEEeCCCCcCHHHH
Confidence            9999999754310                    1223343332 111              1245788999999999999


Q ss_pred             HHHHHHHHHHhh
Q 018283          340 FKLVDETLRRRH  351 (358)
Q Consensus       340 f~~i~~~i~~~~  351 (358)
                      |+++++.+++++
T Consensus       163 f~~l~~~~l~~~  174 (175)
T d1ky3a_         163 FEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc
Confidence            999999998765

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.6e-22  Score=170.30  Aligned_cols=120  Identities=16%  Similarity=0.223  Sum_probs=90.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHH---HHHHcCCCCCCCcEEE
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF---DWVLKQPCFEKTSFML  259 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~---~~i~~~~~~~~~~iil  259 (358)
                      ....+.+.+||++|+...+..|..++..++++|+|+|++          +..++.....|+   ....+.....+.|++|
T Consensus        51 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~~piil  120 (174)
T d1wmsa_          51 DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVD----------DSQSFQNLSNWKKEFIYYADVKEPESFPFVI  120 (174)
T ss_dssp             TTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHHTCSCTTTSCEEE
T ss_pred             cCceeeEeeecccCcceehhhhhhhhhccceEEEEEeee----------cccccchhhhHHHHHHHHhccccCCCceEEE
Confidence            456788999999999999999999999999999999984          344444444444   4444445556789999


Q ss_pred             EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283          260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT  339 (358)
Q Consensus       260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v  339 (358)
                      |+||.|+.+..                      ...+++.+|..+.               ..+.+++|||++++||+++
T Consensus       121 VgnK~Dl~~~~----------------------v~~~~~~~~~~~~---------------~~~~~~e~Sak~~~gI~e~  163 (174)
T d1wmsa_         121 LGNKIDISERQ----------------------VSTEEAQAWCRDN---------------GDYPYFETSAKDATNVAAA  163 (174)
T ss_dssp             EEECTTCSSCS----------------------SCHHHHHHHHHHT---------------TCCCEEECCTTTCTTHHHH
T ss_pred             eccccchhhcc----------------------CcHHHHHHHHHHc---------------CCCeEEEEcCCCCcCHHHH
Confidence            99999985321                      2345555553321               1245789999999999999


Q ss_pred             HHHHHHHHHH
Q 018283          340 FKLVDETLRR  349 (358)
Q Consensus       340 f~~i~~~i~~  349 (358)
                      |+++++.|+.
T Consensus       164 f~~l~~~il~  173 (174)
T d1wmsa_         164 FEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999998874

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1e-22  Score=173.03  Aligned_cols=118  Identities=16%  Similarity=0.199  Sum_probs=83.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+++|||+||+.++..|..|+++++++|+|+|+          ++..++.....++..+.... ....|++|++|
T Consensus        52 ~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~  120 (170)
T d2g6ba1          52 DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDV----------TNKASFDNIQAWLTEIHEYA-QHDVALMLLGN  120 (170)
T ss_dssp             TTEEEEEEEEECCCC--------CCGGGCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred             cCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEEecC----------Ccccchhhhhhhhhhhhhcc-CCCceEEEEEe
Confidence            55678999999999999999999999999999999998          45566777777776665432 24679999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+..++.                     ...+++..+...                ..+.++++||+++.||+++|++
T Consensus       121 k~d~~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~e~Sak~g~gi~e~f~~  163 (170)
T d2g6ba1         121 KVDSAHERV---------------------VKREDGEKLAKE----------------YGLPFMETSAKTGLNVDLAFTA  163 (170)
T ss_dssp             CCSTTSCCC---------------------SCHHHHHHHHHH----------------HTCCEEECCTTTCTTHHHHHHH
T ss_pred             eechhhccc---------------------ccHHHHHHHHHH----------------cCCEEEEEeCCCCcCHHHHHHH
Confidence            999865421                     234455544221                1256889999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +++.|+
T Consensus       164 l~~~i~  169 (170)
T d2g6ba1         164 IAKELK  169 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHcC
Confidence            998875

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=5.6e-23  Score=176.55  Aligned_cols=132  Identities=14%  Similarity=0.143  Sum_probs=95.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+++||++|++.++..+..||++++++|+|+|+          ++.++++....++...+... ..++|++||||
T Consensus        46 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~Sf~~~~~~~~~~~~~~-~~~~~iilVgn  114 (179)
T d1m7ba_          46 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDI----------SRPETLDSVLKKWKGEIQEF-CPNTKMLLVGC  114 (179)
T ss_dssp             SSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEE
T ss_pred             cceEEeeccccccccccccccccchhhhhhhhheeeec----------ccCCCHHHHHHHHHHHHhcc-CCcceEEEEEe
Confidence            56778999999999999999999999999999999998          46778888887777765432 24789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh-HHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL-VKKTFK  341 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n-i~~vf~  341 (358)
                      |+|+.........+.      +.   ..-....+++.++..+ +              ....+++|||+++.| |+++|+
T Consensus       115 K~Dl~~~~~~~~~~~------~~---~~~~V~~~e~~~~a~~-~--------------~~~~y~E~SAk~~~n~i~~~F~  170 (179)
T d1m7ba_         115 KSDLRTDVSTLVELS------NH---RQTPVSYDQGANMAKQ-I--------------GAATYIECSALQSENSVRDIFH  170 (179)
T ss_dssp             CGGGGGCHHHHHHHH------TT---TCCCCCHHHHHHHHHH-H--------------TCSEEEECBTTTBHHHHHHHHH
T ss_pred             cccccccchhhHHHh------hh---hcCcchHHHHHHHHHH-h--------------CCCeEEEEeCCCCCcCHHHHHH
Confidence            999865321100000      00   0011345555554321 1              124678999999996 999999


Q ss_pred             HHHHHHHH
Q 018283          342 LVDETLRR  349 (358)
Q Consensus       342 ~i~~~i~~  349 (358)
                      .+...+++
T Consensus       171 ~~~~~~l~  178 (179)
T d1m7ba_         171 VATLACVN  178 (179)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99998875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.5e-23  Score=179.15  Aligned_cols=131  Identities=14%  Similarity=0.134  Sum_probs=93.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|++.+...+..||++++++|+|+|+          ++..++++...++...+.. ...++|++||+|
T Consensus        49 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~sf~~i~~~~~~~~~~-~~~~~piilvgn  117 (183)
T d1mh1a_          49 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSL----------VSPASFENVRAKWYPEVRH-HCPNTPIILVGT  117 (183)
T ss_dssp             TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEE
T ss_pred             cCcceEEEeecccccccchhhhhhcccccceeeeeecc----------chHHHHHHHHHHHHHHHHH-hCCCCcEEEEee
Confidence            66788999999999999999999999999999999998          4566776666655555443 235789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+...+........     ..    ..+....++..+..+               -..+.+++|||++++||+++|++
T Consensus       118 K~Dl~~~~~~~~~~~~-----~~----~~~~~~~~~~~~a~~---------------~~~~~~~E~SAk~~~~V~e~F~~  173 (183)
T d1mh1a_         118 KLDLRDDKDTIEKLKE-----KK----LTPITYPQGLAMAKE---------------IGAVKYLECSALTQRGLKTVFDE  173 (183)
T ss_dssp             CHHHHTCHHHHHHHHH-----TT----CCCCCHHHHHHHHHH---------------TTCSEEEECCTTTCTTHHHHHHH
T ss_pred             cccchhhhhhhhhhhh-----cc----ccchhhHHHHHHHHH---------------cCCceEEEcCCCCCcCHHHHHHH
Confidence            9999765321100000     00    011334455544211               12367889999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +++.|+
T Consensus       174 l~~~il  179 (183)
T d1mh1a_         174 AIRAVL  179 (183)
T ss_dssp             HHHHHS
T ss_pred             HHHHHc
Confidence            998876

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.8e-23  Score=177.28  Aligned_cols=133  Identities=17%  Similarity=0.169  Sum_probs=96.1

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++|++.++..|..||++++++|+|+|+          ++..++++..+++...+.. ...++|+++++|
T Consensus        47 ~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~Sf~~~~~~~~~~~~~-~~~~~~i~lvgn  115 (191)
T d2ngra_          47 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV----------VSPSSFENVKEKWVPEITH-HCPKTPFLLVGT  115 (191)
T ss_dssp             TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHH-HCTTCCEEEEEE
T ss_pred             CCceeeeeccccccchhhhhhhhhcccccceeeccccc----------chHHHHHHHHHHHHHHHhh-cCCCCceEEEec
Confidence            45678999999999999999999999999999999998          4567787777766665543 235799999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.||.+.+.....+.      ..   .......+++.+|..+.               ..+.+++|||+++.||+++|+.
T Consensus       116 K~Dl~~~~~~~~~~~------~~---~~~~v~~~~~~~~~~~~---------------~~~~~~e~SAk~~~~V~e~f~~  171 (191)
T d2ngra_         116 QIDLRDDPSTIEKLA------KN---KQKPITPETAEKLARDL---------------KAVKYVECSALTQKGLKNVFDE  171 (191)
T ss_dssp             CGGGGGCHHHHHHHH------TT---TCCCCCHHHHHHHHHHT---------------TCSCEEECCTTTCTTHHHHHHH
T ss_pred             cccccccchhhhhhh------hc---ccccccHHHHHHHHHHc---------------CCCeEEEEeCCCCcCHHHHHHH
Confidence            999976532110000      00   00114456666553221               1245789999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +...+++.
T Consensus       172 l~~~~~~~  179 (191)
T d2ngra_         172 AILAALEP  179 (191)
T ss_dssp             HHHHHTSC
T ss_pred             HHHHHhcC
Confidence            98887643

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.8e-22  Score=170.86  Aligned_cols=118  Identities=14%  Similarity=0.151  Sum_probs=92.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++|++.++..+..++++++++|+|+|+          ++..+++....|+..+.......++|++|++|
T Consensus        47 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  116 (166)
T d1ctqa_          47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAI----------NNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN  116 (166)
T ss_dssp             TTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEE
T ss_pred             eceeeeeeeeeccCccccccchhhhhhcccccceeecc----------cccccHHHHHHHHHHHHHhcCCCCCeEEEEec
Confidence            45678999999999999999999999999999999998          46677777777777766544445789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+..+.                      ...+++.+|...                ..+.+++|||++|+||+++|.+
T Consensus       117 K~Dl~~~~----------------------~~~~~~~~~~~~----------------~~~~~~e~Sak~g~gi~e~f~~  158 (166)
T d1ctqa_         117 KCDLAART----------------------VESRQAQDLARS----------------YGIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             CTTCSCCC----------------------SCHHHHHHHHHH----------------HTCCEEECCTTTCTTHHHHHHH
T ss_pred             cccccccc----------------------ccHHHHHHHHHH----------------hCCeEEEEcCCCCcCHHHHHHH
Confidence            99984321                      234455554321                1245789999999999999999


Q ss_pred             HHHHHH
Q 018283          343 VDETLR  348 (358)
Q Consensus       343 i~~~i~  348 (358)
                      +.+.|.
T Consensus       159 i~~~i~  164 (166)
T d1ctqa_         159 LVREIR  164 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=3.5e-22  Score=168.98  Aligned_cols=119  Identities=15%  Similarity=0.230  Sum_probs=88.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+|||+||+.++..|..|+++++++|+|+|++          +..++.....++..+.. ......|+++++|
T Consensus        47 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~-~~~~~~~~i~~~~  115 (166)
T d1g16a_          47 NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT----------DERTFTNIKQWFKTVNE-HANDEAQLLLVGN  115 (166)
T ss_dssp             SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETT----------CHHHHHTHHHHHHHHHH-HSCTTCEEEEEEE
T ss_pred             CCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECC----------CccCHHHHHhhhhhhhc-cccCcceeeeecc
Confidence            667789999999999999999999999999999999984          34455444444444433 2334679999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+..+.                      ...+++.++.. +               ..+.+++|||++++||+++|++
T Consensus       116 k~d~~~~~----------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~~v~e~f~~  157 (166)
T d1g16a_         116 KSDMETRV----------------------VTADQGEALAK-E---------------LGIPFIESSAKNDDNVNEIFFT  157 (166)
T ss_dssp             CTTCTTCC----------------------SCHHHHHHHHH-H---------------HTCCEEECBTTTTBSHHHHHHH
T ss_pred             hhhhhhhh----------------------hhHHHHHHHHH-h---------------cCCeEEEECCCCCCCHHHHHHH
Confidence            99975432                      22344444422 1               1255789999999999999999


Q ss_pred             HHHHHHHh
Q 018283          343 VDETLRRR  350 (358)
Q Consensus       343 i~~~i~~~  350 (358)
                      +.+.+.++
T Consensus       158 l~~~i~~k  165 (166)
T d1g16a_         158 LAKLIQEK  165 (166)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99988653

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=3.7e-22  Score=169.47  Aligned_cols=120  Identities=13%  Similarity=0.195  Sum_probs=93.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ....+.+.+||++|++.+...|..|+.+++++|+|+|+          ++..++.....|+..+... .....|+++++|
T Consensus        48 ~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~~~~~v~n  116 (170)
T d1ek0a_          48 NEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDV----------TKPQSFIKARHWVKELHEQ-ASKDIIIALVGN  116 (170)
T ss_dssp             TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred             ccccccccccccCCchhHHHHHHHHHhccceEEEEEeC----------Ccccchhhhhhhhhhhccc-cccccceeeeec
Confidence            66778999999999999999999999999999999998          4667777777777665443 335789999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+.++.-.                  .....+++.+|..+                ..+.+++|||+++.||+++|..
T Consensus       117 k~d~~~~~~~------------------~~v~~~~~~~~~~~----------------~~~~~~e~Sak~g~gV~e~F~~  162 (170)
T d1ek0a_         117 KIDMLQEGGE------------------RKVAREEGEKLAEE----------------KGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             CGGGGGSSCC------------------CCSCHHHHHHHHHH----------------HTCEEEECCTTTCTTHHHHHHH
T ss_pred             ccccccccch------------------hhhhHHHHHHHHHH----------------cCCEEEEecCCCCcCHHHHHHH
Confidence            9998654211                  01344566665332                2367889999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      |.+.|
T Consensus       163 i~~~i  167 (170)
T d1ek0a_         163 IGEKI  167 (170)
T ss_dssp             HHTTS
T ss_pred             HHHHh
Confidence            87654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2.9e-22  Score=169.05  Aligned_cols=115  Identities=17%  Similarity=0.213  Sum_probs=88.1

Q ss_pred             cccceEEEEEecCCCchhhh-hHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 018283          183 KKSGEVYRLFDVGGQRNERR-KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL  261 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~-~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~  261 (358)
                      ......+.+||+.|+..+.. .|..|+++++++|+|+|+          ++.+++++...|+..+.+.....++|++|||
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvg  116 (165)
T d1z06a1          47 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDM----------TNMASFHSLPAWIEECKQHLLANDIPRILVG  116 (165)
T ss_dssp             TTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHHHCCCSCCCEEEEE
T ss_pred             eccceEEEEEeccCchhhccccceeeecCCCceEEEEEe----------ehhhhhhhhhhhhHHHHhhccCCCCeEEEEe
Confidence            56778899999999887754 588899999999999998          5678888877888887765555689999999


Q ss_pred             eCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC---hhhHHH
Q 018283          262 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD---PKLVKK  338 (358)
Q Consensus       262 NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d---~~ni~~  338 (358)
                      ||+|+.+++.                     ...+++.+|..+                ..+.+++|||++   ++||++
T Consensus       117 nK~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~e~SAkt~~~~~~V~e  159 (165)
T d1z06a1         117 NKCDLRSAIQ---------------------VPTDLAQKFADT----------------HSMPLFETSAKNPNDNDHVEA  159 (165)
T ss_dssp             ECTTCGGGCC---------------------SCHHHHHHHHHH----------------TTCCEEECCSSSGGGGSCHHH
T ss_pred             ccccchhccc---------------------hhHHHHHHHHHH----------------CCCEEEEEecccCCcCcCHHH
Confidence            9999976531                     234555554321                124578999986   559999


Q ss_pred             HHHHHH
Q 018283          339 TFKLVD  344 (358)
Q Consensus       339 vf~~i~  344 (358)
                      +|.+++
T Consensus       160 ~F~~lA  165 (165)
T d1z06a1         160 IFMTLA  165 (165)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            999873

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=2.4e-21  Score=166.55  Aligned_cols=121  Identities=13%  Similarity=0.212  Sum_probs=89.2

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH---HcCCCCCCCcEEE
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV---LKQPCFEKTSFML  259 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i---~~~~~~~~~~iil  259 (358)
                      ....+.+.+||++|+...+..|..++.+++++|+|+|++          +..++.....|+..+   .......++|++|
T Consensus        47 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~ip~il  116 (184)
T d1vg8a_          47 DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVT----------APNTFKTLDSWRDEFLIQASPRDPENFPFVV  116 (184)
T ss_dssp             SSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHHCCSSGGGSCEEE
T ss_pred             CCceEEEEeeecCCcccccccccccccCccEEEEeeccc----------chhhhhcchhhHHHHHHHhccccccCCCEEE
Confidence            556789999999999999999999999999999999984          444555545555444   3333345789999


Q ss_pred             EeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHH
Q 018283          260 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT  339 (358)
Q Consensus       260 v~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~v  339 (358)
                      |+||+|+.+++                      ...+++..+...               ...+.+++|||+++.||+++
T Consensus       117 v~nK~Dl~~~~----------------------~~~~~~~~~~~~---------------~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_         117 LGNKIDLENRQ----------------------VATKRAQAWCYS---------------KNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             EEECTTSSCCC----------------------SCHHHHHHHHHH---------------TTSCCEEECBTTTTBSHHHH
T ss_pred             EEEeecccccc----------------------hhHHHHHHHHHH---------------hcCCeEEEEcCCCCcCHHHH
Confidence            99999985432                      122333333211               12356789999999999999


Q ss_pred             HHHHHHHHHHh
Q 018283          340 FKLVDETLRRR  350 (358)
Q Consensus       340 f~~i~~~i~~~  350 (358)
                      |+++++.++++
T Consensus       160 f~~l~~~i~~~  170 (184)
T d1vg8a_         160 FQTIARNALKQ  170 (184)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999988764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1e-20  Score=161.76  Aligned_cols=122  Identities=13%  Similarity=0.061  Sum_probs=86.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHH--cCCCCCCCcEEEE
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL--KQPCFEKTSFMLF  260 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~--~~~~~~~~~iilv  260 (358)
                      +++.+.+.+||++|+..+     .||++++++|+|||++          +..+++....|+..+.  +.....+.|++||
T Consensus        48 ~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilVfd~~----------~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV  112 (175)
T d2bmja1          48 DGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLE----------DENSFQAVSRLHGQLSSLRGEGRGGLALALV  112 (175)
T ss_dssp             TTEEEEEEEEECSSCCCH-----HHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHCC--CCCCEEEEE
T ss_pred             CceEEEEEEeeccccccc-----ccccccceeEEEeecc----------cchhhhhhHHHHHHHHHHhhcccCCccEEEE
Confidence            677899999999999875     3899999999999984          5556666555555442  3333457899999


Q ss_pred             eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283          261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF  340 (358)
Q Consensus       261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf  340 (358)
                      +||.|+..+...                   .....++.+|..+               ...+.+++|||+++.||.++|
T Consensus       113 ~~k~d~d~~~~~-------------------~v~~~~~~~~~~~---------------~~~~~~~e~SAk~~~~v~~~F  158 (175)
T d2bmja1         113 GTQDRISASSPR-------------------VVGDARARALCAD---------------MKRCSYYETCATYGLNVDRVF  158 (175)
T ss_dssp             EECTTCCSSSCC-------------------CSCHHHHHHHHHT---------------STTEEEEEEBTTTTBTHHHHH
T ss_pred             eeecCcchhhhc-------------------chhHHHHHHHHHH---------------hCCCeEEEeCCCCCcCHHHHH
Confidence            999998433110                   0223444444221               134678999999999999999


Q ss_pred             HHHHHHHHHhhhh
Q 018283          341 KLVDETLRRRHLF  353 (358)
Q Consensus       341 ~~i~~~i~~~~~~  353 (358)
                      ..+++.+++..-+
T Consensus       159 ~~l~~~i~~~~~~  171 (175)
T d2bmja1         159 QEVAQKVVTLRKQ  171 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999876544

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.85  E-value=6.7e-21  Score=158.61  Aligned_cols=121  Identities=20%  Similarity=0.309  Sum_probs=93.4

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +...+.+.+||++|+...+..|..|+.+++++|+++|+          .+...+.....++..+.........|+++++|
T Consensus        40 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  109 (160)
T d1r8sa_          40 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRERVNEAREELMRMLAEDELRDAVLLVFAN  109 (160)
T ss_dssp             ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred             eeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEe----------cChHHHHHHHHHHHHHHHhhcccCceEEEEee
Confidence            56778999999999999999999999999999999998          45677778888888888777777899999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |.|+....                       ...+......   ...     .   +...+.++++||++|+||+++|++
T Consensus       110 k~d~~~~~-----------------------~~~~i~~~~~---~~~-----~---~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_         110 KQDLPNAM-----------------------NAAEITDKLG---LHS-----L---RHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             CTTSTTCC-----------------------CHHHHHHHTT---GGG-----C---SSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             cccccccc-----------------------cHHHHHHHHH---HHH-----H---hhCCCEEEEeECCCCCCHHHHHHH
Confidence            99986431                       1111111100   000     1   234578899999999999999999


Q ss_pred             HHHHH
Q 018283          343 VDETL  347 (358)
Q Consensus       343 i~~~i  347 (358)
                      |.+.|
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98753

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.84  E-value=2.1e-20  Score=158.72  Aligned_cols=131  Identities=21%  Similarity=0.304  Sum_probs=94.0

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  246 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i  246 (358)
                      ++.+.....+      ....+.+.+||++|++..+..|..++..++++++|+|.+          +..++......+...
T Consensus        45 ~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~----------d~~~~~~~~~~~~~~  108 (177)
T d1zj6a1          45 PTIGSNVEEI------VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST----------DRERISVTREELYKM  108 (177)
T ss_dssp             CCSCSSCEEE------EETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETT----------CTTTHHHHHHHHHHH
T ss_pred             cccceeEEEE------eecceEEEEeccccccccccchhhhhccceeeeeecccc----------cccchhhhhhhhhhh
Confidence            4445445555      567789999999999999999999999999999999984          455666666666666


Q ss_pred             HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283          247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY  326 (358)
Q Consensus       247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~  326 (358)
                      .......+.|++|++||+|+....                       ...+..+.+...+        .   ..+.+.++
T Consensus       109 ~~~~~~~~~p~iiv~nK~Dl~~~~-----------------------~~~~i~~~~~~~~--------~---~~~~~~~~  154 (177)
T d1zj6a1         109 LAHEDLRKAGLLIFANKQDVKECM-----------------------TVAEISQFLKLTS--------I---KDHQWHIQ  154 (177)
T ss_dssp             HTSGGGTTCEEEEEEECTTSTTCC-----------------------CHHHHHHHHTGGG--------C---CSSCEEEE
T ss_pred             hhcccccceEEEEEEEcccccccC-----------------------cHHHHHHHHHHHh--------h---HhcCCEEE
Confidence            666667789999999999985431                       1222222211110        1   24568899


Q ss_pred             EeeccChhhHHHHHHHHHHHH
Q 018283          327 RTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       327 ~tSA~d~~ni~~vf~~i~~~i  347 (358)
                      .+||++|+||+++|+++.+.|
T Consensus       155 ~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         155 ACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.80  E-value=6.9e-19  Score=147.22  Aligned_cols=133  Identities=20%  Similarity=0.293  Sum_probs=99.1

Q ss_pred             ccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHH
Q 018283          167 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  246 (358)
Q Consensus       167 ~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i  246 (358)
                      +|.+.....+      ..+.+.+.+||.+|...++..|..++..++++++++|+.          +..+......++...
T Consensus        35 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~   98 (169)
T d1upta_          35 PTIGFNVETV------TYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC----------DRDRIGISKSELVAM   98 (169)
T ss_dssp             CCSSEEEEEE------EETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT----------CCTTHHHHHHHHHHH
T ss_pred             cccceeeeee------ccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhh----------hcchhhhccchhhhh
Confidence            5566666666      667899999999999999999999999999999999973          445566666666666


Q ss_pred             HcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEE
Q 018283          247 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY  326 (358)
Q Consensus       247 ~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~  326 (358)
                      .........|+++++||.|+..+..                       ..+....+...+        +   ..+.+.++
T Consensus        99 ~~~~~~~~~~i~iv~nk~Dl~~~~~-----------------------~~~i~~~~~~~~--------~---~~~~~~~~  144 (169)
T d1upta_          99 LEEEELRKAILVVFANKQDMEQAMT-----------------------SSEMANSLGLPA--------L---KDRKWQIF  144 (169)
T ss_dssp             HTCGGGTTCEEEEEEECTTSTTCCC-----------------------HHHHHHHHTGGG--------C---TTSCEEEE
T ss_pred             hhhhccccceEEEEEeecccccccc-----------------------HHHHHHHHHHHH--------H---hcCCCEEE
Confidence            6666667889999999999965321                       111111111111        1   23567889


Q ss_pred             EeeccChhhHHHHHHHHHHHHHH
Q 018283          327 RTTALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       327 ~tSA~d~~ni~~vf~~i~~~i~~  349 (358)
                      +|||++|+||+++|+++.+.|.+
T Consensus       145 ~~SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         145 KTSATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999998754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=3e-18  Score=142.27  Aligned_cols=137  Identities=15%  Similarity=0.242  Sum_probs=98.5

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .||.+......      ....+.+.+||+.|...+...|..++..++++++++|.+          +...+.....++..
T Consensus        29 ~~t~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----------~~~~~~~~~~~~~~   92 (166)
T d2qtvb1          29 QPTWHPTSEEL------AIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA----------DPERFDEARVELDA   92 (166)
T ss_dssp             CCCCSCEEEEE------CCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETT----------CGGGHHHHHHHHHH
T ss_pred             eceeeEeEEEe------ccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecccc----------chhhhhhhhHHHHh
Confidence            46777777766      677889999999999999999999999999999999984          45566677777878


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEE
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI  325 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~  325 (358)
                      ..+.....+.|+++++||.|+..+.-                       ..+.    .+.+..............+.+.+
T Consensus        93 ~~~~~~~~~~~i~i~~~k~d~~~~~~-----------------------~~~i----~~~~~~~~~~~~~~~~~~~~~~~  145 (166)
T d2qtvb1          93 LFNIAELKDVPFVILGNKIDAPNAVS-----------------------EAEL----RSALGLLNTTGSQRIEGQRPVEV  145 (166)
T ss_dssp             HHTCTTTTTCCEEEEEECTTSSSCCC-----------------------HHHH----HHHHTCSSCCC---CCSSCCEEE
T ss_pred             hhhhhccCCceEEEEeccccccccCC-----------------------HHHH----HHHhhhhhhhHHHhhcccCCCEE
Confidence            87777778899999999999864210                       0000    00000000000000012456789


Q ss_pred             EEeeccChhhHHHHHHHHHH
Q 018283          326 YRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       326 ~~tSA~d~~ni~~vf~~i~~  345 (358)
                      ++|||++|+||+++|+++.+
T Consensus       146 ~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         146 FMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             EEEBTTTTBSHHHHHHHHTT
T ss_pred             EEeeCCCCCCHHHHHHHHhC
Confidence            99999999999999999864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.77  E-value=1.5e-18  Score=147.38  Aligned_cols=128  Identities=17%  Similarity=0.342  Sum_probs=86.9

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ......+..||+.|+...+..|..+++..+++++++|++          +...+.+....+......+...+.|++|++|
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----------d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  122 (186)
T d1f6ba_          53 TIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCA----------DHERLLESKEELDSLMTDETIANVPILILGN  122 (186)
T ss_dssp             EETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETT----------CGGGHHHHHHHHHHHHTCGGGTTSCEEEEEE
T ss_pred             EecccccccccccchhhhhhHHhhhhcccceeeeeeecc----------CccchHHHHHHHHHhhcccccCCCceEEEEe
Confidence            456678899999999999999999999999999999984          4566667777777777767778899999999


Q ss_pred             CCCchhhh----hcc-CCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHH
Q 018283          263 KFDIFEKK----VLK-VPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK  337 (358)
Q Consensus       263 K~Dl~~ek----i~~-~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~  337 (358)
                      |.|+....    +.. ..+..      ......+ .                    ..+....+.+.++.+||++|+||+
T Consensus       123 K~D~~~~~~~~~i~~~~~~~~------~~~~~~~-~--------------------~~~~~~~~~~~~~~~SA~tg~Gi~  175 (186)
T d1f6ba_         123 KIDRPEAISEERLREMFGLYG------QTTGKGS-V--------------------SLKELNARPLEVFMCSVLKRQGYG  175 (186)
T ss_dssp             CTTSTTCCCHHHHHHHHTCTT------TCCCSSC-C--------------------CTTTCCSCCEEEEECBTTTTBSHH
T ss_pred             ccCccccCCHHHHHHHHhhcc------cchhhhh-h--------------------hHHHhhcCCCEEEEEeCCCCCCHH
Confidence            99986431    000 00000      0000000 0                    001112456888999999999999


Q ss_pred             HHHHHHHHHH
Q 018283          338 KTFKLVDETL  347 (358)
Q Consensus       338 ~vf~~i~~~i  347 (358)
                      ++|+++.+.|
T Consensus       176 e~~~~l~~~i  185 (186)
T d1f6ba_         176 EGFRWMAQYI  185 (186)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHHhh
Confidence            9999998653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=4.2e-15  Score=129.21  Aligned_cols=78  Identities=21%  Similarity=0.245  Sum_probs=57.0

Q ss_pred             cccceEEEEEecCCCchhh-hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcC-C-CCCCCcEEE
Q 018283          183 KKSGEVYRLFDVGGQRNER-RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-P-CFEKTSFML  259 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r-~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~-~-~~~~~~iil  259 (358)
                      ....+.+.+||++|++.++ ..|..|++.++++++|+|.++         ....+.+..+++..++.. . ...++|++|
T Consensus        43 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d---------~~~~~~~~~~~l~~~l~~~~~~~~~~pilv  113 (207)
T d2fh5b1          43 NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA---------FQREVKDVAEFLYQVLIDSMALKNSPSLLI  113 (207)
T ss_dssp             STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT---------HHHHHHHHHHHHHHHHHHHHTSTTCCEEEE
T ss_pred             eeeeeeeeeeeccccccccchhhhhhhhhccccceEEEccc---------ccccHHHHHHHHHHHHHhHHHhhcCCcEEE
Confidence            4567889999999999986 678899999999999999852         122244445555554332 1 224689999


Q ss_pred             EeeCCCchhh
Q 018283          260 FLNKFDIFEK  269 (358)
Q Consensus       260 v~NK~Dl~~e  269 (358)
                      ++||+|+..+
T Consensus       114 v~NK~Dl~~a  123 (207)
T d2fh5b1         114 ACNKQDIAMA  123 (207)
T ss_dssp             EEECTTSTTC
T ss_pred             EEECcccCCC
Confidence            9999999753

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.63  E-value=1.2e-15  Score=129.61  Aligned_cols=113  Identities=18%  Similarity=0.149  Sum_probs=71.5

Q ss_pred             cccceEEEEEecCCCchhhhh--------HhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNERRK--------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~--------w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ...+..+.+|||+|+......        ...++++++++|||+|.++         ....   ...++...++. ...+
T Consensus        49 ~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~---------~~~~---~~~~i~~~l~~-~~~~  115 (178)
T d1wf3a1          49 TEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRH---------PPTP---EDELVARALKP-LVGK  115 (178)
T ss_dssp             EETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTS---------CCCH---HHHHHHHHHGG-GTTT
T ss_pred             eeeeeeeeecccccccccccccchhcccccccccccccceeeeechhh---------hhcc---cccchhhheec-cccc
Confidence            456678999999998554333        3445789999999999752         1111   12233333332 2346


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      .|+++|+||+|+.+.                         .++..+.+.+.+              ....++.+||++++
T Consensus       116 ~piilv~NK~Dl~~~-------------------------~~~~~~~~~~~~--------------~~~~~~~iSA~~~~  156 (178)
T d1wf3a1         116 VPILLVGNKLDAAKY-------------------------PEEAMKAYHELL--------------PEAEPRMLSALDER  156 (178)
T ss_dssp             SCEEEEEECGGGCSS-------------------------HHHHHHHHHHTS--------------TTSEEEECCTTCHH
T ss_pred             hhhhhhhcccccccC-------------------------HHHHHHHHHhhc--------------ccCceEEEecCCCC
Confidence            899999999998532                         122222222111              11345679999999


Q ss_pred             hHHHHHHHHHHHH
Q 018283          335 LVKKTFKLVDETL  347 (358)
Q Consensus       335 ni~~vf~~i~~~i  347 (358)
                      ||+++++.|.+.+
T Consensus       157 gi~~L~~~i~~~l  169 (178)
T d1wf3a1         157 QVAELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999987643

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.1e-14  Score=120.98  Aligned_cols=109  Identities=15%  Similarity=0.120  Sum_probs=71.0

Q ss_pred             cccceEEEEEecCCCchhh--------hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNER--------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  254 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r--------~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~  254 (358)
                      ...+..+.+||++|.....        +....++.+++.++|++|.++.+       ..+....    +..++.. ...+
T Consensus        45 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~-------~~~~~~~----~~~~~~~-~~~~  112 (161)
T d2gj8a1          45 HIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTD-------AVDPAEI----WPEFIAR-LPAK  112 (161)
T ss_dssp             EETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCC-------CCSHHHH----CHHHHHH-SCTT
T ss_pred             eccCceeeeccccccccccccchhHHHHHHHHHHHhccccceeecccccc-------chhhhhh----hhhhhhh-cccc
Confidence            4566788999999975432        23445688999999999975321       1122222    2222221 1236


Q ss_pred             CcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChh
Q 018283          255 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK  334 (358)
Q Consensus       255 ~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~  334 (358)
                      .|++||+||+||..+....         .+                                   .....++.+||++++
T Consensus       113 ~~iilv~NK~Dl~~~~~~~---------~~-----------------------------------~~~~~~~~iSAk~~~  148 (161)
T d2gj8a1         113 LPITVVRNKADITGETLGM---------SE-----------------------------------VNGHALIRLSARTGE  148 (161)
T ss_dssp             CCEEEEEECHHHHCCCCEE---------EE-----------------------------------ETTEEEEECCTTTCT
T ss_pred             cceeeccchhhhhhhHHHH---------HH-----------------------------------hCCCcEEEEECCCCC
Confidence            8999999999986542210         00                                   012457789999999


Q ss_pred             hHHHHHHHHHHHH
Q 018283          335 LVKKTFKLVDETL  347 (358)
Q Consensus       335 ni~~vf~~i~~~i  347 (358)
                      ||++++++|++.|
T Consensus       149 gi~~L~~~l~~~l  161 (161)
T d2gj8a1         149 GVDVLRNHLKQSM  161 (161)
T ss_dssp             THHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998753

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.50  E-value=8.5e-14  Score=118.34  Aligned_cols=121  Identities=14%  Similarity=0.062  Sum_probs=79.5

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ...+..+.++|++|+..+.+........++++++|+|.++         ...  ......+..+..    .++|+++++|
T Consensus        55 ~~~~~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~---------g~~--~~~~~~~~~~~~----~~~p~iiv~N  119 (179)
T d1wb1a4          55 KLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKE---------GPK--TQTGEHMLILDH----FNIPIIVVIT  119 (179)
T ss_dssp             EETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTT---------CSC--HHHHHHHHHHHH----TTCCBCEEEE
T ss_pred             ccCCccccccccccccccccchhhhhhhcccccccccccc---------ccc--hhhhhhhhhhhh----cCCcceeccc
Confidence            4566788999999999999988889999999999999752         111  122233333322    2679999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL  342 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~  342 (358)
                      |+|+......                    ....+..+.+.+.+..           -....++.+||++|+||+++++.
T Consensus       120 KiD~~~~~~~--------------------~~~~~~~~~~~~~~~~-----------~~~~~iv~iSA~~g~gi~eL~~~  168 (179)
T d1wb1a4         120 KSDNAGTEEI--------------------KRTEMIMKSILQSTHN-----------LKNSSIIPISAKTGFGVDELKNL  168 (179)
T ss_dssp             CTTSSCHHHH--------------------HHHHHHHHHHHHHSSS-----------GGGCCEEECCTTTCTTHHHHHHH
T ss_pred             cccccCHHHH--------------------HHHHHHHHHHHHHhhc-----------CCCCeEEEEEccCCcCHHHHHHH
Confidence            9998643110                    1112222222222111           12245678999999999999999


Q ss_pred             HHHHHHH
Q 018283          343 VDETLRR  349 (358)
Q Consensus       343 i~~~i~~  349 (358)
                      |.+.+-+
T Consensus       169 I~~~l~~  175 (179)
T d1wb1a4         169 IITTLNN  175 (179)
T ss_dssp             HHHHHHH
T ss_pred             HHhcCCc
Confidence            8877643

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.49  E-value=4.5e-14  Score=118.78  Aligned_cols=115  Identities=13%  Similarity=0.133  Sum_probs=72.0

Q ss_pred             cccceEEEEEecCCCc---------hhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283          183 KKSGEVYRLFDVGGQR---------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE  253 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~---------~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~  253 (358)
                      ......+.+||++|..         .....+..++..++.+++++|.+.        .......+...++..       .
T Consensus        44 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~--------~~~~~~~~~~~~l~~-------~  108 (171)
T d1mkya1          44 EWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKR--------GITKEDESLADFLRK-------S  108 (171)
T ss_dssp             EETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTT--------CCCHHHHHHHHHHHH-------H
T ss_pred             cccccccccccccceeeeeccccccccccccccccccCcEEEEeecccc--------ccccccccccccccc-------c
Confidence            5667789999999842         234456667789999999998631        111111222222222       2


Q ss_pred             CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283          254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP  333 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~  333 (358)
                      ++|+++++||+|+.++.-.                       +     +...+...     .      ...++.+||++|
T Consensus       109 ~~pviiv~NK~Dl~~~~~~-----------------------~-----~~~~~~~~-----~------~~~~i~iSAk~g  149 (171)
T d1mkya1         109 TVDTILVANKAENLREFER-----------------------E-----VKPELYSL-----G------FGEPIPVSAEHN  149 (171)
T ss_dssp             TCCEEEEEESCCSHHHHHH-----------------------H-----THHHHGGG-----S------SCSCEECBTTTT
T ss_pred             cccccccchhhhhhhhhhh-----------------------H-----HHHHHHhc-----C------CCCeEEEecCCC
Confidence            5799999999999754210                       0     01111111     0      012366999999


Q ss_pred             hhHHHHHHHHHHHHHHhh
Q 018283          334 KLVKKTFKLVDETLRRRH  351 (358)
Q Consensus       334 ~ni~~vf~~i~~~i~~~~  351 (358)
                      .||++++++|.+.+-+++
T Consensus       150 ~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         150 INLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             BSHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHhCCCCC
Confidence            999999999998876554

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.49  E-value=5.4e-14  Score=119.30  Aligned_cols=117  Identities=12%  Similarity=0.204  Sum_probs=73.4

Q ss_pred             cccceEEEEEecCCCch-------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT  255 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~-------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~  255 (358)
                      ...+..+.+|||+|...       ....+..++..++.+++++|.+.        .....+.....++....  ....+.
T Consensus        45 ~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~--------~~~~~~~~~~~~~~~~~--~~~~~~  114 (180)
T d1udxa2          45 VSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAAD--------EPLKTLETLRKEVGAYD--PALLRR  114 (180)
T ss_dssp             CSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTS--------CHHHHHHHHHHHHHHHC--HHHHHS
T ss_pred             ecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhccccc--------ccccchhhhhhhhhccc--cccchh
Confidence            34566789999999532       22334456788999999999742        12233333333333221  112257


Q ss_pred             cEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhh
Q 018283          256 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL  335 (358)
Q Consensus       256 ~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~n  335 (358)
                      |+++++||+|+..++.                       ..+    +.+.+..            ..+.++.+||++|+|
T Consensus       115 p~iiv~NK~D~~~~~~-----------------------~~~----~~~~~~~------------~~~~~~~iSA~tg~g  155 (180)
T d1udxa2         115 PSLVALNKVDLLEEEA-----------------------VKA----LADALAR------------EGLAVLPVSALTGAG  155 (180)
T ss_dssp             CEEEEEECCTTSCHHH-----------------------HHH----HHHHHHT------------TTSCEEECCTTTCTT
T ss_pred             hhhhhhhhhhhhhHHH-----------------------HHH----HHHHHHh------------cCCeEEEEEcCCCCC
Confidence            9999999999865421                       111    1222211            124567899999999


Q ss_pred             HHHHHHHHHHHHH
Q 018283          336 VKKTFKLVDETLR  348 (358)
Q Consensus       336 i~~vf~~i~~~i~  348 (358)
                      |+++++.|.+.+.
T Consensus       156 id~L~~~i~~~l~  168 (180)
T d1udxa2         156 LPALKEALHALVR  168 (180)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988774

>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.48  E-value=7.8e-15  Score=116.97  Aligned_cols=77  Identities=23%  Similarity=0.392  Sum_probs=68.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcchHHHHHHHhhccCCCCCccCcHHHHHHHHHhhcC
Q 018283           75 FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWAD  154 (358)
Q Consensus        75 f~~~e~~~~~~~I~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d  154 (358)
                      |+++|+..|+++||.|++++|+.|+++|+.++++..       +|+++..+..+.......+.+.++++++++|..||+|
T Consensus         1 Fs~eE~~~~~~~I~~Nii~~m~~li~a~~~l~i~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~i~~LW~D   73 (121)
T d1tada1           1 YSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYG-------DSARQDDARKLMHMADTIEEGTMPKEMSDIIQRLWKD   73 (121)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCS-------STTHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHC
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCCC-------CchHHHHHHHHHHhhccccCCCCCHHHHHHHHHHhCC
Confidence            789999999999999999999999999999998743       6778888887777655555678999999999999999


Q ss_pred             CCCC
Q 018283          155 PAIQ  158 (358)
Q Consensus       155 ~~i~  158 (358)
                      |+||
T Consensus        74 ~~iq   77 (121)
T d1tada1          74 SGIQ   77 (121)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9999

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.48  E-value=3.8e-14  Score=120.20  Aligned_cols=125  Identities=11%  Similarity=0.165  Sum_probs=69.9

Q ss_pred             EEEEEecCCC-----------chhhhhHh----hhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCC
Q 018283          188 VYRLFDVGGQ-----------RNERRKWI----HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  252 (358)
Q Consensus       188 ~l~i~D~~Gq-----------~~~r~~w~----~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~  252 (358)
                      .+.+|||+|.           +.....+.    .+.+.++++++|+|.+..+..................++.+..    
T Consensus        44 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~----  119 (184)
T d2cxxa1          44 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE----  119 (184)
T ss_dssp             TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH----
T ss_pred             cceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH----
Confidence            3578999994           22223333    3456899999999975322111100000001111223333322    


Q ss_pred             CCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccC
Q 018283          253 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD  332 (358)
Q Consensus       253 ~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d  332 (358)
                      .+.|+++|+||+|+.+.                         .++..+++...+....        ......++.+||++
T Consensus       120 ~~~p~iiv~NK~D~~~~-------------------------~~~~~~~~~~~~~~~~--------~~~~~~~~~vSA~~  166 (184)
T d2cxxa1         120 LDIPTIVAVNKLDKIKN-------------------------VQEVINFLAEKFEVPL--------SEIDKVFIPISAKF  166 (184)
T ss_dssp             TTCCEEEEEECGGGCSC-------------------------HHHHHHHHHHHHTCCG--------GGHHHHEEECCTTT
T ss_pred             cCCCEEEEEeeeehhhh-------------------------HHHHHHHHHHHhcccc--------cccCCeEEEEECCC
Confidence            26799999999997532                         2233344444432211        11122356799999


Q ss_pred             hhhHHHHHHHHHHHHHH
Q 018283          333 PKLVKKTFKLVDETLRR  349 (358)
Q Consensus       333 ~~ni~~vf~~i~~~i~~  349 (358)
                      ++||+++++.|.+.+-+
T Consensus       167 g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         167 GDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHccC
Confidence            99999999999887753

>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=1.8e-14  Score=114.91  Aligned_cols=77  Identities=26%  Similarity=0.374  Sum_probs=65.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcchHHHHHHHhhccCCCCCccCcHHHHHHHHHhhcC
Q 018283           75 FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWAD  154 (358)
Q Consensus        75 f~~~e~~~~~~~I~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d  154 (358)
                      |+++|+..|+++||.|++++|+.|+++|+.++++..       +|.++..+..+...........++++++++|..||+|
T Consensus         1 Fs~eE~~~~~~~I~~Ni~~~~~~ll~a~~~l~i~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~LW~D   73 (121)
T d1cipa1           1 YSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFG-------DAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKD   73 (121)
T ss_dssp             CCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCCS-------STTHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHC
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCC-------ChhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHhCC
Confidence            799999999999999999999999999999998743       5667777766655444444667899999999999999


Q ss_pred             CCCC
Q 018283          155 PAIQ  158 (358)
Q Consensus       155 ~~i~  158 (358)
                      |+||
T Consensus        74 ~~Iq   77 (121)
T d1cipa1          74 SGVQ   77 (121)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9999

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.42  E-value=1e-12  Score=111.52  Aligned_cols=112  Identities=8%  Similarity=0.114  Sum_probs=64.4

Q ss_pred             EEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhh
Q 018283          190 RLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEK  269 (358)
Q Consensus       190 ~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~e  269 (358)
                      .+|+..++......+..+.+.+|++++|+|.+.         ...  .....++..+..    .+.|+++++||+|+...
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~---------~~~--~~~~~~~~~~~~----~~~~~i~v~nK~D~~~~  135 (186)
T d1mkya2          71 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQ---------GIT--RQDQRMAGLMER----RGRASVVVFNKWDLVVH  135 (186)
T ss_dssp             -------CCSCCHHHHHHHHHCSEEEEEEETTT---------CCC--HHHHHHHHHHHH----TTCEEEEEEECGGGSTT
T ss_pred             cccccccccchhHHHHHHHhcCCEEEEeecccc---------cch--hhHHHHHHHHHH----cCCceeeeccchhhhcc
Confidence            344444444555566667788999999999741         111  122222222222    25799999999998643


Q ss_pred             hhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHH
Q 018283          270 KVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLR  348 (358)
Q Consensus       270 ki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~  348 (358)
                      +-                     ....+..+.+.+.+...           ....++.+||++|.||+++++.|.+.+-
T Consensus       136 ~~---------------------~~~~~~~~~~~~~~~~~-----------~~~~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         136 RE---------------------KRYDEFTKLFREKLYFI-----------DYSPLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             GG---------------------GCHHHHHHHHHHHCGGG-----------TTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             hh---------------------hhhhhHHHHHHHHhccc-----------CCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            21                     12344444444433211           1234678999999999999999966543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=5.9e-13  Score=114.93  Aligned_cols=78  Identities=19%  Similarity=0.288  Sum_probs=54.7

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhc----CCcEEEEEEEccccccccccccccchHHHHHHHHH---HHHcCCCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFE----GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD---WVLKQPCFEKT  255 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~----~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~---~i~~~~~~~~~  255 (358)
                      ...+..+.+||++|++..+..|..++.    .++.+++++|.+.         ....+.+...++.   .+.......++
T Consensus        42 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~  112 (209)
T d1nrjb_          42 DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTV---------DPKKLTTTAEFLVDILSITESSCENGI  112 (209)
T ss_dssp             TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTS---------CTTCCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred             EeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEec---------ccccHHHHHHHHHHHHHHHHHHHhccC
Confidence            566778899999999999999998875    4478899999752         2233333333332   22333344579


Q ss_pred             cEEEEeeCCCchhh
Q 018283          256 SFMLFLNKFDIFEK  269 (358)
Q Consensus       256 ~iilv~NK~Dl~~e  269 (358)
                      |+++++||+|+...
T Consensus       113 piiiv~NK~D~~~~  126 (209)
T d1nrjb_         113 DILIACNKSELFTA  126 (209)
T ss_dssp             CEEEEEECTTSTTC
T ss_pred             CeEEEEEeeccccc
Confidence            99999999998653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=9.6e-13  Score=108.87  Aligned_cols=106  Identities=21%  Similarity=0.332  Sum_probs=65.1

Q ss_pred             cccceEEEEEecCCCchh---------hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNE---------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE  253 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~---------r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~  253 (358)
                      ...+..+.+||++|....         .......+.+++++|+|+|.++.          . ..+.......+      .
T Consensus        44 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~----------~-~~~~~~~~~~~------~  106 (160)
T d1xzpa2          44 VIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSP----------L-DEEDRKILERI------K  106 (160)
T ss_dssp             EETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSC----------C-CHHHHHHHHHH------T
T ss_pred             EeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC----------c-chhhhhhhhhc------c
Confidence            556788999999994221         12233346789999999997521          1 11222222222      2


Q ss_pred             CCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh
Q 018283          254 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP  333 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~  333 (358)
                      ..++++++||.|+.+.                       .+.++    +.+.+.             ....++.+||+++
T Consensus       107 ~~~~i~~~~k~d~~~~-----------------------~~~~~----~~~~~~-------------~~~~~~~vSA~~g  146 (160)
T d1xzpa2         107 NKRYLVVINKVDVVEK-----------------------INEEE----IKNKLG-------------TDRHMVKISALKG  146 (160)
T ss_dssp             TSSEEEEEEECSSCCC-----------------------CCHHH----HHHHHT-------------CSTTEEEEEGGGT
T ss_pred             cccceeeeeeccccch-----------------------hhhHH----HHHHhC-------------CCCcEEEEECCCC
Confidence            4689999999998642                       11111    111111             1123567999999


Q ss_pred             hhHHHHHHHHHH
Q 018283          334 KLVKKTFKLVDE  345 (358)
Q Consensus       334 ~ni~~vf~~i~~  345 (358)
                      +||++++++|.+
T Consensus       147 ~gi~~L~~~I~k  158 (160)
T d1xzpa2         147 EGLEKLEESIYR  158 (160)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHh
Confidence            999999998765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.36  E-value=1.6e-12  Score=114.66  Aligned_cols=150  Identities=15%  Similarity=0.065  Sum_probs=82.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ..+...+.++||+|++.|-.........+|++|+|+|..+         ...  ......+..+..    .+.|+++++|
T Consensus        66 ~~~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~---------g~~--~~~~~~~~~~~~----~~~p~iivlN  130 (227)
T d1g7sa4          66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINE---------GFK--PQTQEALNILRM----YRTPFVVAAN  130 (227)
T ss_dssp             GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTT---------CCC--HHHHHHHHHHHH----TTCCEEEEEE
T ss_pred             cccccccccccccceecccccchhcccccceEEEEEeccc---------Ccc--cchhHHHHHhhc----CCCeEEEEEE
Confidence            4566788999999999998777778889999999999741         111  223344444433    2689999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhh--cCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQ--STAPDRVDRVFKIYRTTALDPKLVKKTF  340 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~--~~~~~~~~~~~~~~~tSA~d~~ni~~vf  340 (358)
                      |+|+..............++......... .-.+....++..........  ......-...+.++.+||++|+||++++
T Consensus       131 K~D~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll  209 (227)
T d1g7sa4         131 KIDRIHGWRVHEGRPFMETFSKQDIQVQQ-KLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELL  209 (227)
T ss_dssp             CGGGSTTCCCCTTCCHHHHHTTSCHHHHH-HHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHH
T ss_pred             CccCCCchhhhhhHHHHHhhhcchHHHHH-HHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHH
Confidence            99997643211111111111110000000 00111111111111111000  0000001234567789999999999999


Q ss_pred             HHHHHHHH
Q 018283          341 KLVDETLR  348 (358)
Q Consensus       341 ~~i~~~i~  348 (358)
                      +.+.+...
T Consensus       210 ~~l~~l~~  217 (227)
T d1g7sa4         210 TMLMGLAQ  217 (227)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98887653

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.36  E-value=1.7e-12  Score=110.29  Aligned_cols=118  Identities=14%  Similarity=0.140  Sum_probs=69.6

Q ss_pred             cceEEEEEecCCCchh----hhhH---hhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcE
Q 018283          185 SGEVYRLFDVGGQRNE----RRKW---IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF  257 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~----r~~w---~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~i  257 (358)
                      .+..+.+|||+|....    +..+   ..++..++.++++++.+..+.     ............. .........++|+
T Consensus        47 ~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~kp~  120 (185)
T d1lnza2          47 DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEG-----RDPYDDYLTINQE-LSEYNLRLTERPQ  120 (185)
T ss_dssp             SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSC-----CCHHHHHHHHHHH-HHHSCSSTTTSCB
T ss_pred             CCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeeccccc-----chhhhhhhhhhhc-cchhhhhccCCcc
Confidence            3457899999996322    2222   233457889999988754321     1111111112222 2233455567899


Q ss_pred             EEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHH
Q 018283          258 MLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK  337 (358)
Q Consensus       258 ilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~  337 (358)
                      ++++||+|+.+.+.                          ..+.+.+.+             .....++.+||++++||+
T Consensus       121 ivv~NK~Dl~~~~~--------------------------~~~~~~~~~-------------~~~~~v~~iSA~~g~Gi~  161 (185)
T d1lnza2         121 IIVANKMDMPEAAE--------------------------NLEAFKEKL-------------TDDYPVFPISAVTREGLR  161 (185)
T ss_dssp             CBEEECTTSTTHHH--------------------------HHHHHHHHC-------------CSCCCBCCCSSCCSSTTH
T ss_pred             hhhccccchHhHHH--------------------------HHHHHHHHh-------------ccCCcEEEEECCCCCCHH
Confidence            99999999965421                          111122211             112345679999999999


Q ss_pred             HHHHHHHHHH
Q 018283          338 KTFKLVDETL  347 (358)
Q Consensus       338 ~vf~~i~~~i  347 (358)
                      ++++.|.+.+
T Consensus       162 ~L~~~i~~~L  171 (185)
T d1lnza2         162 ELLFEVANQL  171 (185)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999998876

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.35  E-value=8.7e-12  Score=106.70  Aligned_cols=98  Identities=12%  Similarity=0.159  Sum_probs=60.7

Q ss_pred             hhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccc
Q 018283          201 RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCE  280 (358)
Q Consensus       201 r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~  280 (358)
                      ...+.+.+.+++++++|+|.+.        .......+.++++.   .    .++|+++|+||+|+..+           
T Consensus        96 ~~~~~~~~~~~~~vi~viD~~~--------~~~~~~~~~~~~l~---~----~~~piivv~NK~D~~~~-----------  149 (195)
T d1svia_          96 IETYITTREELKAVVQIVDLRH--------APSNDDVQMYEFLK---Y----YGIPVIVIATKADKIPK-----------  149 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTS--------CCCHHHHHHHHHHH---H----TTCCEEEEEECGGGSCG-----------
T ss_pred             Hhhhhccccchhhhhhhhhccc--------cccccccccccccc---c----ccCcceechhhccccCH-----------
Confidence            3345556678899999999741        11122222333322   2    25799999999998532           


Q ss_pred             cccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHH
Q 018283          281 WFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       281 ~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                                  ...++..+.+.+.+.           ......++.+||++++|++++|++|.+.|
T Consensus       150 ------------~~~~~~~~~~~~~l~-----------~~~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         150 ------------GKWDKHAKVVRQTLN-----------IDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             ------------GGHHHHHHHHHHHHT-----------CCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHhc-----------ccCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence                        123333333333331           12234567799999999999999998765

>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=5.9e-13  Score=105.20  Aligned_cols=76  Identities=16%  Similarity=0.406  Sum_probs=67.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcchHHHHHHHhhccCCCCCccCcHHHHHHHHHhhcC
Q 018283           75 FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWAD  154 (358)
Q Consensus        75 f~~~e~~~~~~~I~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d  154 (358)
                      ||++|+..|+++|+.|++++|+.|++||+.++++..       +|+++..+..+.+.+.. +.+.+++++++.|..||+|
T Consensus         1 fs~eE~~~~~~~I~~Nii~~m~~ll~a~~~l~i~~~-------~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~i~~LW~D   72 (117)
T d2bcjq1           1 YSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYK-------YEHNKAHAQLVREVDVE-KVSAFENPYVDAIKSLWND   72 (117)
T ss_dssp             CCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCCS-------STTHHHHHHHHHTSCST-TCCCCCHHHHHHHHHHHHS
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCCC-------ChhhHHHHHHHHhcccc-cccccCHHHHHHHHHHHcC
Confidence            789999999999999999999999999999998643       67888888888877553 3467899999999999999


Q ss_pred             CCCC
Q 018283          155 PAIQ  158 (358)
Q Consensus       155 ~~i~  158 (358)
                      |+||
T Consensus        73 ~~iq   76 (117)
T d2bcjq1          73 PGIQ   76 (117)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9998

>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=6.9e-13  Score=105.62  Aligned_cols=77  Identities=25%  Similarity=0.373  Sum_probs=67.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcchHHHHHHHhhccCCCC---CccCcHHHHHHHHHh
Q 018283           75 FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLD---YPRLTKELAEDIETL  151 (358)
Q Consensus        75 f~~~e~~~~~~~I~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~l  151 (358)
                      |+++|+..|+++|+.|++++|+.|+++|+.++++.       .+|+++..+..+........   .+.+.++++++|+.|
T Consensus         1 Fs~~E~~~~r~~I~~Nii~~~~~Li~am~~l~i~~-------~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~L   73 (122)
T d1zcaa1           1 FDQKALLEFRDTIFDNILKGSRVLVDARDKLGIPW-------QHSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSAL   73 (122)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-------SSGGGHHHHHHHHTCCCTTCCCCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCC-------CChhhHHHHHHHHhcccccCCCCCccchHHHHHHHHHH
Confidence            78999999999999999999999999999999864       37889999998887765432   456678899999999


Q ss_pred             hcCCCCC
Q 018283          152 WADPAIQ  158 (358)
Q Consensus       152 w~d~~i~  158 (358)
                      |+||+||
T Consensus        74 W~D~~Iq   80 (122)
T d1zcaa1          74 WRDSGIR   80 (122)
T ss_dssp             HHCHHHH
T ss_pred             HCCHHHH
Confidence            9999998

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=2.4e-11  Score=105.29  Aligned_cols=82  Identities=16%  Similarity=0.270  Sum_probs=57.9

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      .-|.......+      ...+..+.+.||+|++.|-+-...-.+.+|++|+|+|.++           .-...+.+.+..
T Consensus        52 giTi~~~~~~~------~~~~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~-----------Gv~~qt~~~~~~  114 (204)
T d2c78a3          52 GITINTAHVEY------ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD-----------GPMPQTREHILL  114 (204)
T ss_dssp             TCCCSCEEEEE------ECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTT-----------CCCHHHHHHHHH
T ss_pred             CeEEEeeEEEE------EeCCeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCC-----------CCcHHHHHHHHH
Confidence            34555555566      6778899999999999998888888899999999999741           122233444444


Q ss_pred             HHcCCCCCCCc-EEEEeeCCCchh
Q 018283          246 VLKQPCFEKTS-FMLFLNKFDIFE  268 (358)
Q Consensus       246 i~~~~~~~~~~-iilv~NK~Dl~~  268 (358)
                      +...    ++| ++++.||+|+.+
T Consensus       115 ~~~~----gi~~iiv~iNK~D~~~  134 (204)
T d2c78a3         115 ARQV----GVPYIVVFMNKVDMVD  134 (204)
T ss_dssp             HHHT----TCCCEEEEEECGGGCC
T ss_pred             HHHc----CCCeEEEEEEecccCC
Confidence            3222    454 788899999853

>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=1.3e-12  Score=104.60  Aligned_cols=77  Identities=27%  Similarity=0.400  Sum_probs=66.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcchHHHHHHHhhccCCC-------CCccCcHHHHHH
Q 018283           75 FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRL-------DYPRLTKELAED  147 (358)
Q Consensus        75 f~~~e~~~~~~~I~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  147 (358)
                      |+++|+..|+++|+.|++++|+.|+++|+.++++..       +|+++..++.+.......       ..+.++++++..
T Consensus         1 Fs~~Er~~~r~~I~~Nii~~m~~ll~a~~~l~i~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~   73 (126)
T d1zcba1           1 FDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWG-------DNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPA   73 (126)
T ss_dssp             CCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCS-------SGGGHHHHHHHHTSCSSSHHHHTTCCCHHHHHHHHHH
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCCC-------CchhHHHHHHHHhcccccccccccccccccCHHHHHH
Confidence            789999999999999999999999999999998753       688888888887754332       246688899999


Q ss_pred             HHHhhcCCCCC
Q 018283          148 IETLWADPAIQ  158 (358)
Q Consensus       148 i~~lw~d~~i~  158 (358)
                      |..||+||+||
T Consensus        74 i~~LW~D~~iq   84 (126)
T d1zcba1          74 IRALWEDSGIQ   84 (126)
T ss_dssp             HHHHHHCHHHH
T ss_pred             HHHHhCCHHHH
Confidence            99999999998

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.18  E-value=2e-10  Score=98.75  Aligned_cols=121  Identities=18%  Similarity=0.179  Sum_probs=76.0

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      ......+.+.|++|++.|-+-...-...+|++|+|+|.++           .-...+.+.+..+..   +...|++++.|
T Consensus        62 ~~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~-----------G~~~QT~~~~~~a~~---~~~~~iIv~iN  127 (196)
T d1d2ea3          62 STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAND-----------GPMPQTREHLLLARQ---IGVEHVVVYVN  127 (196)
T ss_dssp             ECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTT-----------CSCHHHHHHHHHHHH---TTCCCEEEEEE
T ss_pred             EeceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCC-----------CCchhHHHHHHHHHH---hcCCcEEEEEe
Confidence            6677889999999999998777777889999999999741           111233333333322   22458999999


Q ss_pred             CCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccCh---------
Q 018283          263 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP---------  333 (358)
Q Consensus       263 K~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~---------  333 (358)
                      |+|+..+.                      ...+...+-+...+..+.    -   ....+.+..+||++|         
T Consensus       128 K~D~~~~~----------------------~~~~~i~~~i~~~l~~~~----~---~~~~~pii~iSa~~g~~~~~~~~~  178 (196)
T d1d2ea3         128 KADAVQDS----------------------EMVELVELEIRELLTEFG----Y---KGEETPIIVGSALCALEQRDPELG  178 (196)
T ss_dssp             CGGGCSCH----------------------HHHHHHHHHHHHHHHHTT----S---CTTTSCEEECCHHHHHTTCCTTTT
T ss_pred             cccccccH----------------------HHHHHHHHHHHHHHHHhC----C---CcccCEEEEEEccccccccCcccc
Confidence            99985321                      011222222333232221    0   112345677999998         


Q ss_pred             -hhHHHHHHHHHHH
Q 018283          334 -KLVKKTFKLVDET  346 (358)
Q Consensus       334 -~ni~~vf~~i~~~  346 (358)
                       .++.++++.|.+.
T Consensus       179 ~~~~~~Lldai~~~  192 (196)
T d1d2ea3         179 LKSVQKLLDAVDTY  192 (196)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhh
Confidence             6999999887654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.15  E-value=1.6e-10  Score=99.01  Aligned_cols=118  Identities=14%  Similarity=0.134  Sum_probs=73.9

Q ss_pred             cceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 018283          185 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  264 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~  264 (358)
                      ....+.+.|++|++.|......-...++++++|+|..+       ........+.+.....+ +     ..+++++.||+
T Consensus        76 ~~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~-------g~~~~~t~e~~~~~~~~-~-----~~~iiv~inK~  142 (195)
T d1kk1a3          76 FVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE-------PCPRPQTREHLMALQII-G-----QKNIIIAQNKI  142 (195)
T ss_dssp             EEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTS-------CSSCHHHHHHHHHHHHH-T-----CCCEEEEEECG
T ss_pred             CceeEeeeccchhhhhhHHhhcccccccccccccchhh-------hhhhhhhHHHHHHHHHh-c-----Cccceeeeecc
Confidence            44678999999999998887777889999999999742       11112233444433332 1     24688899999


Q ss_pred             CchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHH
Q 018283          265 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD  344 (358)
Q Consensus       265 Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~  344 (358)
                      |+.++..                       ..+...-+.+.+....         ...+.+..+||++|+||.++++.|.
T Consensus       143 D~~d~~~-----------------------~~~~~~~~~~~~~~~~---------~~~~~iIpiSA~~G~ni~~Ll~~I~  190 (195)
T d1kk1a3         143 ELVDKEK-----------------------ALENYRQIKEFIEGTV---------AENAPIIPISALHGANIDVLVKAIE  190 (195)
T ss_dssp             GGSCHHH-----------------------HHHHHHHHHHHHTTST---------TTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             cchhhHH-----------------------HHHHHHHHHHHhcccc---------CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            9865321                       1111111222221110         1234566799999999999998887


Q ss_pred             HHH
Q 018283          345 ETL  347 (358)
Q Consensus       345 ~~i  347 (358)
                      +.|
T Consensus       191 ~~i  193 (195)
T d1kk1a3         191 DFI  193 (195)
T ss_dssp             HHS
T ss_pred             HHC
Confidence            643

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.13  E-value=9.7e-10  Score=96.11  Aligned_cols=83  Identities=13%  Similarity=0.065  Sum_probs=55.1

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      ..|..+....+      ...+..+.+.|++|++.|-.-...-..-+|++|+|+|..+        .-...   +.+.+.-
T Consensus        74 g~ti~~~~~~~------~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~--------G~~~Q---t~e~~~~  136 (222)
T d1zunb3          74 GITIDVAYRYF------STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY--------GVQTQ---TRRHSYI  136 (222)
T ss_dssp             -CCCCCEEEEE------ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTT--------CSCHH---HHHHHHH
T ss_pred             CCCceeeEEEE------eccceEEEEEeccchhhhhhhhccccccCceEEEEecccc--------Ccccc---hHHHHHH
Confidence            34444444555      5567889999999999998888888889999999999742        11222   2222222


Q ss_pred             HHcCCCCCCCcEEEEeeCCCchh
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~~  268 (358)
                      +..   +.-..++++.||+|+.+
T Consensus       137 ~~~---~gv~~iiv~vNK~D~~~  156 (222)
T d1zunb3         137 ASL---LGIKHIVVAINKMDLNG  156 (222)
T ss_dssp             HHH---TTCCEEEEEEECTTTTT
T ss_pred             HHH---cCCCEEEEEEEcccccc
Confidence            211   11235899999999864

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.09  E-value=3.1e-10  Score=97.94  Aligned_cols=117  Identities=14%  Similarity=0.102  Sum_probs=71.9

Q ss_pred             ceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 018283          186 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD  265 (358)
Q Consensus       186 ~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~D  265 (358)
                      ...+.+.|++|+..|-+....-...++++|+|+|..+       .-......+.+.....      +.-.|++++.||+|
T Consensus        85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~-------gi~~~~t~e~~~~~~~------~~i~~iIV~vNK~D  151 (205)
T d2qn6a3          85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE-------PFPQPQTREHFVALGI------IGVKNLIIVQNKVD  151 (205)
T ss_dssp             EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTS-------CSSCHHHHHHHHHHHH------TTCCCEEEEEECGG
T ss_pred             eEEEEEeccchHHHHHhhhhcceeccccccccccccc-------cccchhHHHHHHHHHH------cCCceeeeccccCC
Confidence            3568999999999998777777889999999999741       0001112222222222      12358999999999


Q ss_pred             chhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHH
Q 018283          266 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE  345 (358)
Q Consensus       266 l~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~  345 (358)
                      +......                       ..-...+.......         ....+.+..+||++|.||.++++.|..
T Consensus       152 l~~~~~~-----------------------~~~~~~~~~~l~~~---------~~~~~p~ipiSA~~g~nI~~L~e~i~~  199 (205)
T d2qn6a3         152 VVSKEEA-----------------------LSQYRQIKQFTKGT---------WAENVPIIPVSALHKINIDSLIEGIEE  199 (205)
T ss_dssp             GSCHHHH-----------------------HHHHHHHHHHHTTS---------TTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             CccchHH-----------------------HHHHHHHHHHhccc---------cCCCCeEEEEeCCCCCChHHHHHHHHh
Confidence            9653210                       11111111111111         112355677999999999999998876


Q ss_pred             HH
Q 018283          346 TL  347 (358)
Q Consensus       346 ~i  347 (358)
                      .|
T Consensus       200 ~i  201 (205)
T d2qn6a3         200 YI  201 (205)
T ss_dssp             HS
T ss_pred             hC
Confidence            43

>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.01  E-value=1.1e-10  Score=91.07  Aligned_cols=72  Identities=15%  Similarity=0.221  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcchHHHHHHHhhccCCCCCccCcHHHHHHHHHhhcCCCCC
Q 018283           81 KSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQ  158 (358)
Q Consensus        81 ~~~~~~I~~n~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~i~  158 (358)
                      ..+.+.||.|++++|+.|++||+.|+++-.     +.+|+++..+..+.+..... ...++++++++|++||+|++||
T Consensus         2 ~~~i~~I~~Nii~sm~~li~Am~~L~~~i~-----~~~~~n~~~~~~i~~~~~~~-~~~~~~e~~~~i~~LW~D~giq   73 (114)
T d1azta1           2 ATKVQDIKNNLKEAIETIVAAMSNLVPPVE-----LANPENQFRVDYILSVMNVP-DFDFPPEFYEHAKALWEDEGVR   73 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSSCCC-----CSSGGGHHHHHHHHHTTTCS-SCCCCHHHHHHHHHHHHSHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHcCCCCC-----cCCHHHHHHHHHHHhccccc-CcccCHHHHHHHHHHhCCHHHH
Confidence            457789999999999999999999975421     23689999999888876543 3568899999999999999998

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.00  E-value=5.2e-09  Score=93.79  Aligned_cols=81  Identities=14%  Similarity=0.053  Sum_probs=60.6

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHH
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  245 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~  245 (358)
                      ..|.......+      ..++.+++++||+|+..|..-...-.+-+|++|+|+|..           ..-...+...|+.
T Consensus        52 ~~ti~~~~~~~------~~~~~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~-----------~Gv~~~t~~~~~~  114 (267)
T d2dy1a2          52 RTTVRTGVAPL------LFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAE-----------AGVQVGTERAWTV  114 (267)
T ss_dssp             TSCCSCEEEEE------EETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETT-----------TCSCHHHHHHHHH
T ss_pred             CCeEEeecccc------cccccceeEEccCchhhhhhhhhhhhcccCceEEEeecc-----------CCccchhHHHHHh
Confidence            34444444556      667889999999999999888888899999999999963           2233344555665


Q ss_pred             HHcCCCCCCCcEEEEeeCCCch
Q 018283          246 VLKQPCFEKTSFMLFLNKFDIF  267 (358)
Q Consensus       246 i~~~~~~~~~~iilv~NK~Dl~  267 (358)
                      +...    +.|.++|.||+|..
T Consensus       115 ~~~~----~~p~~i~iNk~D~~  132 (267)
T d2dy1a2         115 AERL----GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHT----TCCEEEEEECGGGC
T ss_pred             hhhc----cccccccccccccc
Confidence            5443    68999999999964

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.98  E-value=1e-09  Score=96.04  Aligned_cols=79  Identities=15%  Similarity=0.147  Sum_probs=51.6

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +.++..+.+.|++|+..|-.-...-.+-+|++|+|+|..+=-..-. ..-.....+.+.....      +...+++++.|
T Consensus        77 ~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t-~~~~~qt~e~l~~~~~------~~~~~iIv~iN  149 (224)
T d1jnya3          77 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAG-MSVEGQTREHIILAKT------MGLDQLIVAVN  149 (224)
T ss_dssp             ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHH-HSTTCHHHHHHHHHHH------TTCTTCEEEEE
T ss_pred             ecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCccccc-ccccchhHHHHHHHHH------hCCCceEEEEE
Confidence            5677899999999999998888888889999999999742100000 0001222233332222      22347899999


Q ss_pred             CCCchh
Q 018283          263 KFDIFE  268 (358)
Q Consensus       263 K~Dl~~  268 (358)
                      |+|+..
T Consensus       150 K~D~~~  155 (224)
T d1jnya3         150 KMDLTE  155 (224)
T ss_dssp             CGGGSS
T ss_pred             cccCCC
Confidence            999853

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.91  E-value=5.2e-09  Score=94.10  Aligned_cols=84  Identities=14%  Similarity=0.045  Sum_probs=64.7

Q ss_pred             eeccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHH
Q 018283          165 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD  244 (358)
Q Consensus       165 ~~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~  244 (358)
                      |..|+......|      ..++.++++.||+|+..|..-...-++-+|++|+|+|-+           ..--..+...|+
T Consensus        55 r~~si~~~~~~~------~~~~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~-----------~Gv~~~T~~~w~  117 (276)
T d2bv3a2          55 RGITITAAVTTC------FWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSS-----------QGVEPQSETVWR  117 (276)
T ss_dssp             CCCCCCCSEEEE------EETTEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETT-----------TSSCHHHHHHHH
T ss_pred             cCCccccceeee------ccCCeEEEEecCCchhhhHHHHHHHHHhhhheEEecccc-----------CCcchhHHHHHH
Confidence            445555556667      778899999999999999988888899999999999963           222234556666


Q ss_pred             HHHcCCCCCCCcEEEEeeCCCchhh
Q 018283          245 WVLKQPCFEKTSFMLFLNKFDIFEK  269 (358)
Q Consensus       245 ~i~~~~~~~~~~iilv~NK~Dl~~e  269 (358)
                      .....    +.|.++|.||+|...+
T Consensus       118 ~a~~~----~lP~i~fINKmDr~~a  138 (276)
T d2bv3a2         118 QAEKY----KVPRIAFANKMDKTGA  138 (276)
T ss_dssp             HHHTT----TCCEEEEEECTTSTTC
T ss_pred             HHHHc----CCCEEEEEeccccccc
Confidence            65432    7899999999998653

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=1.2e-08  Score=90.07  Aligned_cols=49  Identities=16%  Similarity=0.104  Sum_probs=40.6

Q ss_pred             eccCceeeEeeccCCCCcccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEc
Q 018283          166 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAI  220 (358)
Q Consensus       166 ~~T~gi~e~~~~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dl  220 (358)
                      .-|.......|      ...+.++.+.|++|+..|-+-+..=..-+|++|+|+|.
T Consensus        69 GiTi~~~~~~~------~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda  117 (239)
T d1f60a3          69 GITIDIALWKF------ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAG  117 (239)
T ss_dssp             TCCCSCSCEEE------ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEEC
T ss_pred             eeccccceeEe------ccCCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEEC
Confidence            34555555666      66788999999999999998888888899999999996

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=6.6e-09  Score=86.61  Aligned_cols=25  Identities=20%  Similarity=0.133  Sum_probs=20.7

Q ss_pred             EEEEEeeccChhhHHHHHHHHHHHH
Q 018283          323 FKIYRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       323 ~~~~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                      ..++.+||++++||+++++.|.+.+
T Consensus       146 ~~~~~vSA~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         146 LDIVPISAETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             SEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             CCEEEEeCcCCCCHHHHHHHHHHhC
Confidence            4577899999999999999886643

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=9.8e-09  Score=85.68  Aligned_cols=72  Identities=13%  Similarity=0.253  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCC
Q 018283          238 ETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPD  317 (358)
Q Consensus       238 ~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~  317 (358)
                      .....+......    ..++++++||.|+...                       .......+.+.+.....        
T Consensus       115 ~~~~~~~~~~~~----~~~~~~v~~k~D~~~~-----------------------~~~~~~~~~~~~~l~~~--------  159 (188)
T d1puia_         115 LDQQMIEWAVDS----NIAVLVLLTKADKLAS-----------------------GARKAQLNMVREAVLAF--------  159 (188)
T ss_dssp             HHHHHHHHHHHT----TCCEEEEEECGGGSCH-----------------------HHHHHHHHHHHHHHGGG--------
T ss_pred             HHHHHHHHhhhc----cccccchhhhhhccCH-----------------------HHHHHHHHHHHHHHHhh--------
Confidence            334445554332    5689999999998543                       11222333334433322        


Q ss_pred             CCCceEEEEEeeccChhhHHHHHHHHHHH
Q 018283          318 RVDRVFKIYRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       318 ~~~~~~~~~~tSA~d~~ni~~vf~~i~~~  346 (358)
                        .....++.|||++|.||+++++.|.+-
T Consensus       160 --~~~~~~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         160 --NGDVQVETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             --CSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             --CCCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence              123567889999999999999987653

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.78  E-value=2.7e-08  Score=88.04  Aligned_cols=126  Identities=11%  Similarity=0.112  Sum_probs=64.8

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccc--cccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEE
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE--YDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLF  260 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~--~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv  260 (358)
                      ......+.+.|++|+..|-.....-..-++++|+|+|..+  +.+..   .......+.+......      .-.+++++
T Consensus        98 ~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~---~~~~QT~e~l~l~~~~------~i~~iiv~  168 (245)
T d1r5ba3          98 ETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGF---ERGGQTREHAVLARTQ------GINHLVVV  168 (245)
T ss_dssp             ECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTT---STTCCHHHHHHHHHHT------TCSSEEEE
T ss_pred             ccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCcc---ccccchHHHHHHHHHc------CCCeEEEE
Confidence            5567789999999999998777777788999999999742  00000   0011233333322221      12358899


Q ss_pred             eeCCCchhhhhccCCCcccccccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHH
Q 018283          261 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF  340 (358)
Q Consensus       261 ~NK~Dl~~eki~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf  340 (358)
                      .||+|+......                   +..+++..+-+...+..+.    +. .....+.+.-+||++|+||.+.+
T Consensus       169 iNKmD~~~~~~~-------------------e~~~~ei~~~l~~~l~~i~----~~-~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         169 INKMDEPSVQWS-------------------EERYKECVDKLSMFLRRVA----GY-NSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             EECTTSTTCSSC-------------------HHHHHHHHHHHHHHHHHHH----CC-CHHHHEEEEECBTTTTBTTSSCC
T ss_pred             EEcCCCCccchh-------------------HHHHHHHHHHHHHHHHHHh----Cc-CcccCCEEEEeeccCCCCcccch
Confidence            999998542110                   0123444444444443332    00 01234677789999999997654


Q ss_pred             H
Q 018283          341 K  341 (358)
Q Consensus       341 ~  341 (358)
                      +
T Consensus       225 ~  225 (245)
T d1r5ba3         225 D  225 (245)
T ss_dssp             C
T ss_pred             h
Confidence            3

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=2.6e-07  Score=87.27  Aligned_cols=25  Identities=20%  Similarity=0.464  Sum_probs=22.3

Q ss_pred             hhccccEEEecCCCCChhHHHHHHH
Q 018283           44 EKHIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        44 ~~~~~killlG~~~sGKSTi~kq~~   68 (358)
                      .+..++|+++|.+|+|||||++.++
T Consensus        53 ~~~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          53 DSSVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             HHCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHh
Confidence            4567899999999999999999875

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.62  E-value=1.7e-07  Score=83.33  Aligned_cols=77  Identities=8%  Similarity=0.098  Sum_probs=45.5

Q ss_pred             cccceEEEEEecCCCchh-------hhhHhhhh--cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283          183 KKSGEVYRLFDVGGQRNE-------RRKWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE  253 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~-------r~~w~~y~--~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~  253 (358)
                      ...+..+.++||+|-...       ......+.  .+.++++||++++..       .-...-...+..+..++....  
T Consensus        76 ~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~-------r~~~~~~~~l~~l~~~fg~~~--  146 (257)
T d1h65a_          76 SRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-------RVDNLDKLVAKAITDSFGKGI--  146 (257)
T ss_dssp             EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-------CCCHHHHHHHHHHHHHHCGGG--
T ss_pred             EeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCC-------CCCHHHHHHHHHHHHHcchhh--
Confidence            456678999999996321       12222222  357889999987421       011222334555555554322  


Q ss_pred             CCcEEEEeeCCCchh
Q 018283          254 KTSFMLFLNKFDIFE  268 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~  268 (358)
                      -.++++|+||.|...
T Consensus       147 ~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         147 WNKAIVALTHAQFSP  161 (257)
T ss_dssp             GGGEEEEEECCSCCC
T ss_pred             hhCEEEEEECcccCC
Confidence            247899999999864

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=2.8e-07  Score=84.98  Aligned_cols=72  Identities=11%  Similarity=0.111  Sum_probs=56.3

Q ss_pred             cccceEEEEEecCCCchhhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 018283          183 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN  262 (358)
Q Consensus       183 ~~~~~~l~i~D~~Gq~~~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~N  262 (358)
                      +.+...+++.||+|+..|-.-...-.+-+|++|+|||..           ..-...+...++.....    +.|+++|.|
T Consensus        92 ~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~-----------eGv~~qT~~~~~~a~~~----~~p~i~viN  156 (341)
T d1n0ua2          92 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTI-----------EGVCVQTETVLRQALGE----RIKPVVVIN  156 (341)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETT-----------TBSCHHHHHHHHHHHHT----TCEEEEEEE
T ss_pred             cccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecc-----------cCcchhHHHHHHHHHHc----CCCeEEEEE
Confidence            456788999999999999888888889999999999963           22233445566665543    689999999


Q ss_pred             CCCchhh
Q 018283          263 KFDIFEK  269 (358)
Q Consensus       263 K~Dl~~e  269 (358)
                      |+|....
T Consensus       157 KiDr~~~  163 (341)
T d1n0ua2         157 KVDRALL  163 (341)
T ss_dssp             CHHHHHH
T ss_pred             Ccccccc
Confidence            9998654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.34  E-value=4.9e-06  Score=71.85  Aligned_cols=24  Identities=13%  Similarity=0.027  Sum_probs=19.8

Q ss_pred             EEEEEeeccChhhHHHHHHHHHHH
Q 018283          323 FKIYRTTALDPKLVKKTFKLVDET  346 (358)
Q Consensus       323 ~~~~~tSA~d~~ni~~vf~~i~~~  346 (358)
                      +.++.+||++++||+++++.+.+.
T Consensus       217 ~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         217 VRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             CCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            456779999999999999877653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=0.00011  Score=66.92  Aligned_cols=26  Identities=8%  Similarity=0.169  Sum_probs=21.8

Q ss_pred             eEEEEEeeccChhhHHHHHHHHHHHH
Q 018283          322 VFKIYRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       322 ~~~~~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                      ...++.|||+++++|+++++.|.+..
T Consensus       232 ~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         232 QPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             CCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             cceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            34677899999999999999987754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.77  E-value=7.5e-05  Score=67.87  Aligned_cols=26  Identities=8%  Similarity=0.117  Sum_probs=21.9

Q ss_pred             eEEEEEeeccChhhHHHHHHHHHHHH
Q 018283          322 VFKIYRTTALDPKLVKKTFKLVDETL  347 (358)
Q Consensus       322 ~~~~~~tSA~d~~ni~~vf~~i~~~i  347 (358)
                      ...+..|||+++++|+++++.|.+..
T Consensus       230 ~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         230 TPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             CCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CCceEEEEecCCCCHHHHHHHHHHHH
Confidence            34578899999999999999997664

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.94  E-value=0.0011  Score=59.41  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=19.3

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      +||.|+|-+.||||||++.+.
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt   21 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAAT   21 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEeEECCCCCCHHHHHHHHH
Confidence            589999999999999999984

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.87  E-value=0.00022  Score=57.92  Aligned_cols=21  Identities=33%  Similarity=0.575  Sum_probs=19.3

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      +||+|+|++|||||||++.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~   21 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIV   21 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHH
Confidence            589999999999999999874

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.82  E-value=0.0018  Score=57.04  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=20.0

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      .+||-|||-+.||||||++.+.
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt   23 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALT   23 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHH
Confidence            4799999999999999999874

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.81  E-value=0.0015  Score=58.20  Aligned_cols=70  Identities=20%  Similarity=0.252  Sum_probs=43.9

Q ss_pred             eEEEEEecCCCch-------------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283          187 EVYRLFDVGGQRN-------------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE  253 (358)
Q Consensus       187 ~~l~i~D~~Gq~~-------------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~  253 (358)
                      ..+.++|++|--.             ....+..|..+++++|+++.-..         ..-.......+.+.+ . +  .
T Consensus       131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~---------~~~~~~~~~~~~~~~-~-~--~  197 (306)
T d1jwyb_         131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN---------TDLANSDALQLAKEV-D-P--E  197 (306)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS---------SCSTTCSHHHHHHHH-C-S--S
T ss_pred             CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccc---------ccccccHHHHHHHHh-C-c--C
Confidence            4578999999632             24678889999998777663211         111112234445554 2 2  2


Q ss_pred             CCcEEEEeeCCCchhh
Q 018283          254 KTSFMLFLNKFDIFEK  269 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~e  269 (358)
                      ...+++|.||.|..++
T Consensus       198 ~~r~i~Vitk~D~~~~  213 (306)
T d1jwyb_         198 GKRTIGVITKLDLMDK  213 (306)
T ss_dssp             CSSEEEEEECTTSSCS
T ss_pred             CCeEEEEEeccccccc
Confidence            4589999999998643

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.73  E-value=0.0032  Score=55.57  Aligned_cols=70  Identities=13%  Similarity=0.214  Sum_probs=42.8

Q ss_pred             eEEEEEecCCCch-------------hhhhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCC
Q 018283          187 EVYRLFDVGGQRN-------------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE  253 (358)
Q Consensus       187 ~~l~i~D~~Gq~~-------------~r~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~  253 (358)
                      ..+.++|++|--.             ....+..|....+.+|+++.-+         ...-...+...+.+.+ . +  .
T Consensus       125 ~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a---------~~~~~~~~~~~~~~~~-~-~--~  191 (299)
T d2akab1         125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPA---------NSDLANSDALKIAKEV-D-P--Q  191 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEES---------SSCGGGCHHHHHHHHH-C-T--T
T ss_pred             CCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeeccc---------ccchhhhHHHHHHHHh-C-c--C
Confidence            3578899998632             2466778888888766655422         1111122344555554 2 2  2


Q ss_pred             CCcEEEEeeCCCchhh
Q 018283          254 KTSFMLFLNKFDIFEK  269 (358)
Q Consensus       254 ~~~iilv~NK~Dl~~e  269 (358)
                      ..++++|.||.|...+
T Consensus       192 ~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         192 GQRTIGVITKLDLMDE  207 (299)
T ss_dssp             CSSEEEEEECGGGSCT
T ss_pred             CCceeeEEeccccccc
Confidence            4588999999998764

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.59  E-value=0.00038  Score=56.30  Aligned_cols=26  Identities=31%  Similarity=0.584  Sum_probs=22.2

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcCCC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQTG   74 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~~~   74 (358)
                      +|++.|++||||||+++.+..-++..
T Consensus         9 ~I~i~G~~GsGKTTla~~La~~~~~~   34 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAAVFNTT   34 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            79999999999999999997655543

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.49  E-value=0.00072  Score=54.12  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=20.6

Q ss_pred             cccEEEecCCCCChhHHHHHHHHh
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l   70 (358)
                      ..+|+|.|++||||||+.+.+..-
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999998533

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.42  E-value=0.0095  Score=49.94  Aligned_cols=36  Identities=17%  Similarity=0.173  Sum_probs=23.0

Q ss_pred             cceEEEEEecCCCchhhh----hHhhhh--cCCcEEEEEEEc
Q 018283          185 SGEVYRLFDVGGQRNERR----KWIHLF--EGVSAVIFCAAI  220 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~----~w~~y~--~~~~~iIfv~dl  220 (358)
                      ....+.++||+|......    -+..+.  -+.+-+++|.|.
T Consensus        91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a  132 (207)
T d1ls1a2          91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA  132 (207)
T ss_dssp             HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred             ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEecc
Confidence            456788999999754322    223332  256778889885

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.40  E-value=0.00086  Score=54.55  Aligned_cols=25  Identities=28%  Similarity=0.424  Sum_probs=21.3

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      ++|+|+|++||||||+.+.+..-++
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Confidence            4799999999999999999855453

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.36  E-value=0.00085  Score=53.89  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=21.4

Q ss_pred             ccccEEEecCCCCChhHHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~   69 (358)
                      +.++|+|.|++||||||+.+.+..
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            567999999999999999999853

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.24  E-value=0.0012  Score=54.26  Aligned_cols=26  Identities=27%  Similarity=0.324  Sum_probs=22.1

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhc
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      +.++|+|+|++||||||+.+.+.--+
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHh
Confidence            45799999999999999999985444

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.0013  Score=53.58  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=20.8

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      +||+++|++||||||+.+.+..-+
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999985444

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.19  E-value=0.0013  Score=53.74  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=20.8

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      +||+|+|++||||||+.+.+..-+
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            589999999999999999985444

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.15  E-value=0.0016  Score=53.96  Aligned_cols=26  Identities=31%  Similarity=0.491  Sum_probs=22.8

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhc
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      +.++|+|+|++||||||+.+.+.--|
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999986444

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.12  E-value=0.0024  Score=56.00  Aligned_cols=92  Identities=16%  Similarity=0.182  Sum_probs=56.0

Q ss_pred             hhHhhhhcCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCccccc
Q 018283          202 RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEW  281 (358)
Q Consensus       202 ~~w~~y~~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~  281 (358)
                      +......+.+|.||+|+|.-+-      -++.+.      .++.++.     +.|+++|+||+||.....          
T Consensus         7 r~i~~~i~~~DvIl~V~DaR~P------~ss~~~------~l~~~~~-----~Kp~IlVlNK~DLv~~~~----------   59 (273)
T d1puja_           7 REVTEKLKLIDIVYELVDARIP------MSSRNP------MIEDILK-----NKPRIMLLNKADKADAAV----------   59 (273)
T ss_dssp             HHHHHHGGGCSEEEEEEETTST------TTTSCH------HHHHHCS-----SSCEEEEEECGGGSCHHH----------
T ss_pred             HHHHHHHHhCCEEEEEEECCCC------CCCCCH------HHHHHHc-----CCCeEEEEECccCCchHH----------
Confidence            3344578999999999996310      012232      2344433     579999999999864321          


Q ss_pred             ccccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHHHHHHHH
Q 018283          282 FKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRR  349 (358)
Q Consensus       282 f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i~~~i~~  349 (358)
                                   .++..+    .|..            .......+||+++.++..+...+.+.+..
T Consensus        60 -------------~~~w~~----~f~~------------~~~~~i~isa~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          60 -------------TQQWKE----HFEN------------QGIRSLSINSVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             -------------HHHHHH----HHHT------------TTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             -------------HHHHHH----HHHh------------cCCccceeecccCCCccccchhhhhhhhh
Confidence                         122222    2332            12345678999988888877777665543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.12  E-value=0.0015  Score=51.96  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=19.5

Q ss_pred             EEEecCCCCChhHHHHHHHHhcC
Q 018283           50 LLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~~   72 (358)
                      |+|.|++||||||+++++..-++
T Consensus         5 I~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            77889999999999999865443

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.10  E-value=0.0015  Score=53.21  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=20.8

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      ++|+|+|++||||||+.+.+.--+
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            589999999999999999985444

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.0013  Score=51.74  Aligned_cols=27  Identities=33%  Similarity=0.511  Sum_probs=21.5

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcCCCC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQTGF   75 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~~~f   75 (358)
                      .|+|+|++||||||+.+.+...++-.|
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~   30 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEF   30 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            689999999999999999854444333

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.09  E-value=0.0013  Score=51.59  Aligned_cols=19  Identities=37%  Similarity=0.508  Sum_probs=16.8

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      |+|.|++||||||+++++.
T Consensus         5 Iii~G~pGsGKTTla~~L~   23 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFI   23 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6778999999999999873

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.07  E-value=0.017  Score=50.87  Aligned_cols=23  Identities=35%  Similarity=0.468  Sum_probs=20.8

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ..+||-|+|-+.||||||++.+.
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT   31 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAIT   31 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            56899999999999999999874

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.0019  Score=52.73  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=21.5

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhc
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+||+|+|++||||||+.+.+.--+
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4789999999999999999986444

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.01  E-value=0.0019  Score=53.08  Aligned_cols=26  Identities=35%  Similarity=0.422  Sum_probs=22.1

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhc
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      +.++|+|+|++||||||+++.+..-+
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35789999999999999999885444

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.88  E-value=0.0021  Score=51.57  Aligned_cols=28  Identities=36%  Similarity=0.487  Sum_probs=22.5

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcCCCC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQTGF   75 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~~~f   75 (358)
                      .+|+|+|.+||||||+.+.+...++-.|
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~~f   29 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGVGL   29 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            3799999999999999999865444444

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.85  E-value=0.0045  Score=52.63  Aligned_cols=47  Identities=13%  Similarity=0.207  Sum_probs=28.2

Q ss_pred             cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchh
Q 018283          209 EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE  268 (358)
Q Consensus       209 ~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~  268 (358)
                      .|+|.+++|+++.+-      +.+...++..+.   ..    +..+++.+||+||+||..
T Consensus         9 ANiD~vliV~s~~~P------~~~~~~ldR~Lv---~a----~~~~i~pvIvlnK~DL~~   55 (225)
T d1u0la2           9 ANVDQVILVVTVKMP------ETSTYIIDKFLV---LA----EKNELETVMVINKMDLYD   55 (225)
T ss_dssp             ESCCEEEEEECSSTT------CCCHHHHHHHHH---HH----HHTTCEEEEEECCGGGCC
T ss_pred             ccCCEEEEEEeCCCC------CCCHHHHHHHHH---HH----HHcCCCEEEEEeCcccCC
Confidence            588999999986310      112222322221   21    123789999999999964

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.0022  Score=52.72  Aligned_cols=22  Identities=27%  Similarity=0.575  Sum_probs=19.0

Q ss_pred             EEEecCCCCChhHHHHHHHHhc
Q 018283           50 LLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~   71 (358)
                      |+|+|++|||||||.+++..-+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999985433

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.76  E-value=0.035  Score=46.26  Aligned_cols=65  Identities=14%  Similarity=0.147  Sum_probs=40.6

Q ss_pred             cceEEEEEecCCCchhhhh----Hhhhhc--------CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCC
Q 018283          185 SGEVYRLFDVGGQRNERRK----WIHLFE--------GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  252 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~~----w~~y~~--------~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~  252 (358)
                      ++..+.+.||+|.......    +..+.+        ...-+++|+|.+         ...+.+.+....|..+ .    
T Consensus        87 ~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~---------~~~~~~~~~~~~~~~~-~----  152 (207)
T d1okkd2          87 RGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAV---------TGQNGLEQAKKFHEAV-G----  152 (207)
T ss_dssp             HTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETT---------BCTHHHHHHHHHHHHH-C----
T ss_pred             CCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecc---------cCchHHHHHHHhhhcc-C----
Confidence            3467889999997443221    222221        345688899864         4556677777766665 2    


Q ss_pred             CCCcEEEEeeCCCc
Q 018283          253 EKTSFMLFLNKFDI  266 (358)
Q Consensus       253 ~~~~iilv~NK~Dl  266 (358)
                         +=-++++|.|-
T Consensus       153 ---~~~lI~TKlDe  163 (207)
T d1okkd2         153 ---LTGVIVTKLDG  163 (207)
T ss_dssp             ---CSEEEEECTTS
T ss_pred             ---CceEEEeccCC
Confidence               11467899995

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.73  E-value=0.0023  Score=52.12  Aligned_cols=21  Identities=24%  Similarity=0.360  Sum_probs=18.2

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      .=|+|+|.+||||||+++++.
T Consensus        15 ~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            357889999999999999873

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.73  E-value=0.0025  Score=52.62  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=19.9

Q ss_pred             EEEecCCCCChhHHHHHHHHhcCC
Q 018283           50 LLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      |+|+|++|||||||.+++.-.+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~   26 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSS   26 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCC
Confidence            789999999999999988544443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.67  E-value=0.0019  Score=55.29  Aligned_cols=87  Identities=11%  Similarity=0.223  Sum_probs=50.5

Q ss_pred             cCCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCchhhhhccCCCcccccccccccC
Q 018283          209 EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPV  288 (358)
Q Consensus       209 ~~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~eki~~~~l~~~~~f~~y~~~  288 (358)
                      .|+|.+++|++..+-      +.+...++.   ++-.. .   ..+++.+||+||.||..+                   
T Consensus         9 ANiD~~~iV~s~~~P------~~~~~~idR---~Lv~a-~---~~~i~pvIvlnK~DL~~~-------------------   56 (231)
T d1t9ha2           9 CNVDQAVLVFSAVQP------SFSTALLDR---FLVLV-E---ANDIQPIICITKMDLIED-------------------   56 (231)
T ss_dssp             ECCCEEEEEEESTTT------TCCHHHHHH---HHHHH-H---TTTCEEEEEEECGGGCCC-------------------
T ss_pred             cccCEEEEEEECCCC------CCCHHHHHH---HHHHH-H---HcCCCEEEEEeccccccc-------------------
Confidence            588999999986311      112222222   22122 2   247889999999999643                   


Q ss_pred             CCCcccHHHHHHHHHHHHHHHhhhcCCCCCCCceEEEEEeeccChhhHHHHHHHH
Q 018283          289 STGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV  343 (358)
Q Consensus       289 ~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~tSA~d~~ni~~vf~~i  343 (358)
                          .+..+.++.+.+.|..+            .+..+.+||+++++++++-..+
T Consensus        57 ----~~~~~~~~~~~~~y~~~------------g~~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          57 ----QDTEDTIQAYAEDYRNI------------GYDVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             ----HHHHHHHHHHHHHHHHH------------TCCEEECCHHHHTTCTTTGGGG
T ss_pred             ----HHHHHHHHHHHHHHhhc------------cccceeeecCChhHHHHHHHhh
Confidence                12233334444445443            2557789999888887765543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0029  Score=51.84  Aligned_cols=22  Identities=32%  Similarity=0.412  Sum_probs=18.6

Q ss_pred             EEEecCCCCChhHHHHHHHHhc
Q 018283           50 LLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~   71 (358)
                      |+|+|++|||||||++++..-+
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7889999999999999875444

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0026  Score=50.54  Aligned_cols=19  Identities=26%  Similarity=0.450  Sum_probs=17.1

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      +.+.|.+|||||||++.+-
T Consensus         5 i~itG~~GSGKTTL~~~L~   23 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLI   23 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            6788999999999999873

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.61  E-value=0.0032  Score=50.21  Aligned_cols=25  Identities=24%  Similarity=0.599  Sum_probs=20.0

Q ss_pred             cEEEe-cCCCCChhHHHHHHHHhcCC
Q 018283           49 KLLLL-GAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        49 killl-G~~~sGKSTi~kq~~~l~~~   73 (358)
                      ||++| |.+||||||+.+.+...++.
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l~~   29 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVLPE   29 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            55555 99999999999998755544

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.61  E-value=0.0039  Score=50.36  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=17.7

Q ss_pred             ccEEE-ecCCCCChhHHHHHHH
Q 018283           48 QKLLL-LGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~kill-lG~~~sGKSTi~kq~~   68 (358)
                      +||++ .|.+||||||+++.+.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            46665 5999999999999985

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.59  E-value=0.0032  Score=51.76  Aligned_cols=24  Identities=33%  Similarity=0.403  Sum_probs=19.9

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .-|+|+|++||||||+.+++.--+
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            357889999999999999985433

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.59  E-value=0.037  Score=46.39  Aligned_cols=65  Identities=12%  Similarity=0.187  Sum_probs=37.8

Q ss_pred             cceEEEEEecCCCchhhh----hHhhhhcC--------CcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCC
Q 018283          185 SGEVYRLFDVGGQRNERR----KWIHLFEG--------VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  252 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r~----~w~~y~~~--------~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~  252 (358)
                      ++..+.+.||+|......    -+..+.+.        .+-+++|.|.+         ...+.+.+....|..+ .    
T Consensus        92 ~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~---------~~~~~~~~~~~~~~~~-~----  157 (213)
T d1vmaa2          92 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT---------TGQNGLVQAKIFKEAV-N----  157 (213)
T ss_dssp             TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG---------GHHHHHHHHHHHHHHS-C----
T ss_pred             cCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccc---------cCcchhhhhhhhcccc-C----
Confidence            456789999999533211    11222221        35688899863         4455566666655543 1    


Q ss_pred             CCCcEEEEeeCCCc
Q 018283          253 EKTSFMLFLNKFDI  266 (358)
Q Consensus       253 ~~~~iilv~NK~Dl  266 (358)
                         +-=++++|.|-
T Consensus       158 ---~~~lI~TKlDe  168 (213)
T d1vmaa2         158 ---VTGIILTKLDG  168 (213)
T ss_dssp             ---CCEEEEECGGG
T ss_pred             ---CceEEEecccC
Confidence               22477899995

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.0028  Score=54.61  Aligned_cols=27  Identities=30%  Similarity=0.391  Sum_probs=22.8

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhcCC
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      .-++.++|++|||||||++.+..++.+
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl~~p   55 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRFYIP   55 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            347999999999999999998766653

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.044  Score=45.81  Aligned_cols=65  Identities=17%  Similarity=0.173  Sum_probs=39.0

Q ss_pred             cceEEEEEecCCCchh-------hhhHhhhhc-----CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCC
Q 018283          185 SGEVYRLFDVGGQRNE-------RRKWIHLFE-----GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  252 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~-------r~~w~~y~~-----~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~  252 (358)
                      ++..+.+.||+|....       -..+....+     ...-+++|.|.+         ...+.+.++...|+.+ .    
T Consensus        90 ~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~---------~~~~~~~~~~~~~~~~-~----  155 (211)
T d2qy9a2          90 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS---------TGQNAVSQAKLFHEAV-G----  155 (211)
T ss_dssp             TTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGG---------GTHHHHHHHHHHHHHS-C----
T ss_pred             cCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcc---------cCcchHHHHhhhhhcc-C----
Confidence            4567889999995322       222333332     135788899863         4456666666666544 1    


Q ss_pred             CCCcEEEEeeCCCc
Q 018283          253 EKTSFMLFLNKFDI  266 (358)
Q Consensus       253 ~~~~iilv~NK~Dl  266 (358)
                         +=-++++|.|-
T Consensus       156 ---~~~lIlTKlDe  166 (211)
T d2qy9a2         156 ---LTGITLTKLDG  166 (211)
T ss_dssp             ---CCEEEEECCTT
T ss_pred             ---CceEEEeecCC
Confidence               22477899996

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0034  Score=51.52  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=20.4

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhc
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      +.|+|+|++||||||+.+.+.--+
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999985433

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.47  E-value=0.0034  Score=51.17  Aligned_cols=19  Identities=32%  Similarity=0.620  Sum_probs=17.0

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      |+|+|++||||||+++.+.
T Consensus         5 ivl~GpsG~GK~tl~~~L~   23 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLR   23 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6788999999999999875

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.45  E-value=0.0032  Score=54.69  Aligned_cols=27  Identities=33%  Similarity=0.437  Sum_probs=22.9

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhcCC
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      .-++.|+|++|||||||++.+..++.+
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl~~p   67 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRFYDI   67 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcccCC
Confidence            347999999999999999998766654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0035  Score=49.96  Aligned_cols=19  Identities=32%  Similarity=0.614  Sum_probs=16.6

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      ++|.|.+||||||+.+.+.
T Consensus         9 ivl~G~~GsGKsT~a~~La   27 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVA   27 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5568999999999999884

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.40  E-value=0.0036  Score=49.95  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=19.5

Q ss_pred             ccccEEEecCCCCChhHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~   68 (358)
                      +.+=|+|.|.+||||||+.+.+.
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34568899999999999999874

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.34  E-value=0.0037  Score=49.92  Aligned_cols=22  Identities=50%  Similarity=0.490  Sum_probs=18.2

Q ss_pred             EEEecCCCCChhHHHHHHHHhc
Q 018283           50 LLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~   71 (358)
                      |+|.|++||||||+.+.+...+
T Consensus         7 I~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTCS
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5677999999999999885444

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0036  Score=54.28  Aligned_cols=27  Identities=33%  Similarity=0.421  Sum_probs=22.9

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhcCC
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      .-++.++|++|||||||++-+..++.+
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~gl~~p   66 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQNLYQP   66 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcccCC
Confidence            347999999999999999998766654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0039  Score=49.87  Aligned_cols=19  Identities=26%  Similarity=0.518  Sum_probs=17.5

Q ss_pred             cEEEecCCCCChhHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~   67 (358)
                      .|+|.|++|+||||+++++
T Consensus         3 ~v~ItG~~GtGKTtl~~~i   21 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKA   21 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHH
Confidence            4889999999999999987

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.32  E-value=0.0037  Score=53.93  Aligned_cols=26  Identities=31%  Similarity=0.553  Sum_probs=22.3

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcCC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      -++.++|++|||||||++-+..++.+
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~~p   54 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFYQP   54 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            37899999999999999998766653

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.31  E-value=0.095  Score=43.66  Aligned_cols=66  Identities=12%  Similarity=0.074  Sum_probs=36.8

Q ss_pred             cceEEEEEecCCCchhh------hhHhhhhc--CCcEEEEEEEccccccccccccccchHHHHHHHHHHHHcCCCCCCCc
Q 018283          185 SGEVYRLFDVGGQRNER------RKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS  256 (358)
Q Consensus       185 ~~~~l~i~D~~Gq~~~r------~~w~~y~~--~~~~iIfv~dls~~d~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~  256 (358)
                      .+..+.+.||+|...+.      .....+..  ..+-+++|.|.+         ...+.+......+..+       + +
T Consensus        93 ~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~---------~~~~~~~~~~~~~~~~-------~-~  155 (211)
T d1j8yf2          93 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDAS---------IGQKAYDLASKFNQAS-------K-I  155 (211)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGG---------GGGGHHHHHHHHHHHC-------T-T
T ss_pred             cCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecc---------cCcchHHHHhhhhccc-------C-c
Confidence            45678899999963221      11122222  345678888863         3445555544444332       1 1


Q ss_pred             EEEEeeCCCch
Q 018283          257 FMLFLNKFDIF  267 (358)
Q Consensus       257 iilv~NK~Dl~  267 (358)
                      =-++++|.|-.
T Consensus       156 ~~lI~TKlDet  166 (211)
T d1j8yf2         156 GTIIITKMDGT  166 (211)
T ss_dssp             EEEEEECTTSC
T ss_pred             ceEEEecccCC
Confidence            23669999963

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.22  E-value=0.0052  Score=50.50  Aligned_cols=24  Identities=21%  Similarity=0.386  Sum_probs=20.1

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -|+|+|++||||||+.+.+..-|+
T Consensus        10 iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478889999999999999865553

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.22  E-value=0.0044  Score=49.88  Aligned_cols=24  Identities=17%  Similarity=0.384  Sum_probs=19.7

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .|+|+|.+||||||+.+.+..-.+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999854333

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.21  E-value=0.0043  Score=51.17  Aligned_cols=19  Identities=26%  Similarity=0.545  Sum_probs=17.4

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      |+|+|.+||||||+++++.
T Consensus         5 i~l~GlpgsGKSTla~~L~   23 (213)
T d1bifa1           5 IVMVGLPARGKTYISKKLT   23 (213)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7889999999999999884

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.20  E-value=0.0043  Score=49.61  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=20.8

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcCCC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQTG   74 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~~~   74 (358)
                      .|+|+|.+||||||+.|.+..-++-.
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~   27 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLV   27 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            48999999999999999985444433

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.16  E-value=0.0049  Score=52.91  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=20.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|++||||||+++.+..+..
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            467899999999999999876664

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.005  Score=52.63  Aligned_cols=24  Identities=29%  Similarity=0.431  Sum_probs=20.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|++||||||+++-+..+..
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            578999999999999998865554

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.14  E-value=0.0051  Score=49.18  Aligned_cols=20  Identities=25%  Similarity=0.493  Sum_probs=17.4

Q ss_pred             ccEE-EecCCCCChhHHHHHH
Q 018283           48 QKLL-LLGAGESGKSTIFKQI   67 (358)
Q Consensus        48 ~kil-llG~~~sGKSTi~kq~   67 (358)
                      +||+ ++|.+|||||||+.++
T Consensus         1 Mkii~I~G~~gSGKTTli~~l   21 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKW   21 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHH
Confidence            3665 9999999999999887

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.10  E-value=0.0078  Score=49.39  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=19.6

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -|+|+|++||||||+.+.+.--|
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47789999999999999986544

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.09  E-value=0.012  Score=49.60  Aligned_cols=40  Identities=20%  Similarity=0.277  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHHHhc
Q 018283           32 EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        32 ~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      .+...++.-..+.+....+|+.|++|+||||+++.+..-+
T Consensus        20 ~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~   59 (238)
T d1in4a2          20 KLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL   59 (238)
T ss_dssp             HHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhcc
Confidence            3444554444444445579999999999999999875333

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.98  E-value=0.0054  Score=51.18  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=20.1

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++||||||+++-+..+..
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcccc
Confidence            578999999999999998865443

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.98  E-value=0.0054  Score=52.36  Aligned_cols=24  Identities=33%  Similarity=0.432  Sum_probs=20.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|++||||||+++-+..+..
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~~   56 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLDK   56 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCcchhhHhccCCCC
Confidence            578999999999999998865554

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.81  E-value=0.007  Score=51.91  Aligned_cols=25  Identities=36%  Similarity=0.469  Sum_probs=21.1

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcCC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      -+.|+|++||||||+++-+..+..+
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~~p   58 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLEEP   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCC
Confidence            5789999999999999988665543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.78  E-value=0.0069  Score=53.29  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=21.2

Q ss_pred             ccEEEecCCCCChhHHHHHHHHhcC
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -++.|+|++|||||||++-+..++.
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCc
Confidence            4689999999999999998865554

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.77  E-value=0.0068  Score=48.52  Aligned_cols=19  Identities=16%  Similarity=0.198  Sum_probs=16.5

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      |++.|.+||||||+++.+.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5566999999999999884

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.71  E-value=0.015  Score=50.76  Aligned_cols=38  Identities=29%  Similarity=0.277  Sum_probs=24.6

Q ss_pred             cHHHHHHHHHHHHHhhccc-cEEEecCCCCChhHHHHHH
Q 018283           30 TAEIERRIEQETKAEKHIQ-KLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        30 s~~id~~l~~~~~~~~~~~-killlG~~~sGKSTi~kq~   67 (358)
                      ..++|+.++.-.+...... -|+|.|.||+|||||++++
T Consensus        26 ~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v   64 (277)
T d2a5yb3          26 EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQA   64 (277)
T ss_dssp             HHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHH
Confidence            3455555544333222333 4568999999999999886

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.70  E-value=0.004  Score=54.08  Aligned_cols=28  Identities=21%  Similarity=0.417  Sum_probs=22.6

Q ss_pred             ccccEEEecCCCCChhHHHHHHHHhcCC
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      ..-++.|+|++|||||||++-+..++.+
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p   70 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFYDV   70 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcCCc
Confidence            3448999999999999999887655543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.0072  Score=51.89  Aligned_cols=24  Identities=33%  Similarity=0.499  Sum_probs=20.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.++|++||||||+++-+..+..
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~~   56 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLER   56 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCcc
Confidence            578999999999999998865554

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=94.62  E-value=0.0084  Score=51.43  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=20.5

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|++||||||+++-+..+..
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            678999999999999998865554

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=94.56  E-value=0.0061  Score=51.98  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=21.2

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcCC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      -+.|+|++||||||+++-+..+..+
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~~p   52 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFHVP   52 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcCC
Confidence            4789999999999999998766643

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.48  E-value=0.0086  Score=48.55  Aligned_cols=21  Identities=33%  Similarity=0.385  Sum_probs=17.8

Q ss_pred             cEEEecCCCCChhHHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~   69 (358)
                      =|.+-|++||||||+++++..
T Consensus        24 iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            356889999999999999853

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.0049  Score=50.11  Aligned_cols=22  Identities=23%  Similarity=0.299  Sum_probs=18.7

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      ..-|+|.|.+||||||+.+.+.
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3467788999999999999884

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.009  Score=49.92  Aligned_cols=19  Identities=16%  Similarity=0.410  Sum_probs=17.1

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      |+|+|++|||||||.+.+.
T Consensus         5 ivi~GPSG~GK~tl~~~L~   23 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALL   23 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6788999999999999875

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.23  E-value=0.013  Score=50.14  Aligned_cols=26  Identities=31%  Similarity=0.247  Sum_probs=21.2

Q ss_pred             EEEecCCCCChhHHHHHHHHhcCCCC
Q 018283           50 LLLLGAGESGKSTIFKQIKLLFQTGF   75 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~~~~f   75 (358)
                      |||.|++|+||||+++.+..-.+.+|
T Consensus        35 ilL~GpPGtGKT~la~~la~~~~~~~   60 (273)
T d1gvnb_          35 FLLGGQPGSGKTSLRSAIFEETQGNV   60 (273)
T ss_dssp             EEEECCTTSCTHHHHHHHHHHTTTCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcce
Confidence            88999999999999999865544444

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.22  E-value=0.0063  Score=52.31  Aligned_cols=25  Identities=28%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcCC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      -+.|+|++||||||+++-+..+..+
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~~p   57 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLDVP   57 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcCC
Confidence            6889999999999999988766543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.87  E-value=0.014  Score=49.47  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=18.3

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      -..+++|.+|+|||||++.+.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHhhc
Confidence            357899999999999999873

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=93.65  E-value=0.015  Score=49.75  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=20.2

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|++||||||+++-+.-++.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            478999999999999998865554

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.60  E-value=0.016  Score=50.26  Aligned_cols=24  Identities=33%  Similarity=0.560  Sum_probs=20.5

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|+|++||||||+++-+..+..
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~~   53 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLEK   53 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcc
Confidence            688999999999999998865554

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.52  E-value=0.013  Score=49.91  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=19.6

Q ss_pred             cEEEecCCCCChhHHHHHHHHhc
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~   71 (358)
                      -+.|+|++||||||+++.+..+.
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999886543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=93.34  E-value=0.027  Score=47.41  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=19.3

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      .-.+|+.|++|+||||+++-+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la   56 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIA   56 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999874

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.30  E-value=0.025  Score=46.91  Aligned_cols=26  Identities=35%  Similarity=0.377  Sum_probs=20.8

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhcC
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .+.|.+-|++||||||+.+.+..-|+
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35677789999999999999864443

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.29  E-value=0.021  Score=50.64  Aligned_cols=22  Identities=23%  Similarity=0.540  Sum_probs=19.5

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      .--+|++||+|+|||.++|++.
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA   70 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLA   70 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHh
Confidence            3469999999999999999984

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.19  E-value=0.036  Score=47.44  Aligned_cols=21  Identities=33%  Similarity=0.487  Sum_probs=18.6

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      ..|||.|++|+|||++++.+.
T Consensus        41 ~~vLL~GppGtGKT~la~alA   61 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIA   61 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHh
Confidence            359999999999999999874

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.026  Score=46.65  Aligned_cols=23  Identities=30%  Similarity=0.338  Sum_probs=18.7

Q ss_pred             ccEEEecCCCCChhHHHHHHHHh
Q 018283           48 QKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~~l   70 (358)
                      +-|.+-|++||||||+.+.+...
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            34678899999999999988533

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.08  E-value=0.021  Score=49.23  Aligned_cols=24  Identities=33%  Similarity=0.530  Sum_probs=20.4

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|++||||||+++-+..++.
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHCCCc
Confidence            478999999999999999865554

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.07  E-value=0.021  Score=48.73  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=19.8

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      -+.|+|+.||||||++|-+..+..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            467999999999999998865544

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.026  Score=46.65  Aligned_cols=36  Identities=25%  Similarity=0.435  Sum_probs=25.8

Q ss_pred             cHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHH
Q 018283           30 TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        30 s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~   67 (358)
                      ..+|++.+.--..  +..-.++|+|++|+|||+++..+
T Consensus        28 d~Ei~~l~~iL~r--~~k~n~lLvG~pGVGKTalv~~L   63 (195)
T d1jbka_          28 DEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGL   63 (195)
T ss_dssp             HHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHhc--cCCCCeEEEecCCcccHHHHHHH
Confidence            4466666554321  23447999999999999999887

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.77  E-value=0.028  Score=48.86  Aligned_cols=36  Identities=28%  Similarity=0.435  Sum_probs=26.6

Q ss_pred             cHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHH
Q 018283           30 TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        30 s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~   67 (358)
                      ..+|++.+.--.  .+..-.+||+|++|+|||+++..+
T Consensus        24 d~Ei~~l~~iL~--r~~k~n~lLVG~~GvGKTalv~~l   59 (268)
T d1r6bx2          24 EKELERAIQVLC--RRRKNNPLLVGESGVGKTAIAEGL   59 (268)
T ss_dssp             HHHHHHHHHHHT--SSSSCEEEEECCTTSSHHHHHHHH
T ss_pred             HHHHHHHHHHHh--cCccCCcEEECCCCCcHHHHHHHH
Confidence            456776666542  123347999999999999999887

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.54  E-value=0.028  Score=47.64  Aligned_cols=20  Identities=40%  Similarity=0.433  Sum_probs=17.5

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -++|.|++|+||||+++++.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            57788999999999999873

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=92.50  E-value=0.034  Score=45.77  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=18.4

Q ss_pred             EEEecCCCCChhHHHHHHHHhcC
Q 018283           50 LLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~~   72 (358)
                      |++.|++||||||+.+.+..-|+
T Consensus         6 I~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            45569999999999999864443

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=92.34  E-value=0.048  Score=45.32  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=19.6

Q ss_pred             hccccEEEecCCCCChhHHHHHHH
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ++..=|.+.|.+|||||||.+.+.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            345558889999999999998873

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.22  E-value=0.014  Score=49.69  Aligned_cols=20  Identities=25%  Similarity=0.491  Sum_probs=17.8

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      ..+++|.+|+|||||++.+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~  118 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAIS  118 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHC
T ss_pred             eEEEECCCCccHHHHHHhhc
Confidence            57899999999999999873

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=92.20  E-value=0.036  Score=51.71  Aligned_cols=31  Identities=26%  Similarity=0.475  Sum_probs=24.9

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcCCCCCHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAE   79 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~~~f~~~e   79 (358)
                      .|||+||+|||||-|++.+..+.+-+|.--+
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~VPFv~~d   81 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLANAPFIKVE   81 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence            5999999999999999999766665554333

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.11  E-value=0.03  Score=47.31  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=18.7

Q ss_pred             cccEEEecCCCCChhHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~   67 (358)
                      ...+|+.|++|+||||+++.+
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~l   53 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMAL   53 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTH
T ss_pred             CCeEEEECCCCCCHHHHHHHH
Confidence            446999999999999999887

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.10  E-value=0.035  Score=46.41  Aligned_cols=20  Identities=30%  Similarity=0.400  Sum_probs=18.0

Q ss_pred             ccEEEecCCCCChhHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~   67 (358)
                      -.+||.|++|+||||+++.+
T Consensus        46 ~~lll~Gp~G~GKTtla~~i   65 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALAL   65 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHH
Confidence            45899999999999999876

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=92.06  E-value=0.038  Score=44.74  Aligned_cols=24  Identities=25%  Similarity=0.176  Sum_probs=19.7

Q ss_pred             cccEEEecCCCCChhHHHHHHHHh
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l   70 (358)
                      .+=|.|.|..||||||+++.++..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC
Confidence            345678899999999999988643

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.06  E-value=0.026  Score=45.94  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=20.0

Q ss_pred             ccccEEEecCCCCChhHHHHHHHH
Q 018283           46 HIQKLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        46 ~~~killlG~~~sGKSTi~kq~~~   69 (358)
                      +.+=|++-|..||||||+++.+..
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            445688889999999999998853

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.77  E-value=0.04  Score=46.58  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=18.7

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      -.++|.|++|+||||+++.+.
T Consensus        44 ~~lll~GppGtGKT~l~~~l~   64 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLW   64 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHH
Confidence            468999999999999999874

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=91.56  E-value=0.11  Score=44.22  Aligned_cols=20  Identities=25%  Similarity=0.512  Sum_probs=18.4

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      .|||.|++|+|||++++.+.
T Consensus        44 giLl~GppGtGKT~la~aia   63 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVA   63 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHH
Confidence            49999999999999999884

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.54  E-value=0.044  Score=46.26  Aligned_cols=20  Identities=25%  Similarity=0.340  Sum_probs=18.0

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      .+||.|++|+||||+++.+.
T Consensus        54 ~lll~GPpG~GKTt~a~~la   73 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVA   73 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            58899999999999999874

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=91.49  E-value=0.016  Score=46.54  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=19.5

Q ss_pred             EEecCCCCChhHHHHHHHHhcCC
Q 018283           51 LLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        51 lllG~~~sGKSTi~kq~~~l~~~   73 (358)
                      +|+|+.|||||||+..+..+..+
T Consensus        28 vi~G~NGsGKStil~Ai~~~L~g   50 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFVTALIP   50 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             EEECCCCCCHHHHHHHHHHHhcC
Confidence            67899999999999999866544

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.05  E-value=0.059  Score=43.97  Aligned_cols=20  Identities=20%  Similarity=0.454  Sum_probs=17.5

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      -|++-|..||||||+++.+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47788999999999999874

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.84  E-value=0.14  Score=43.71  Aligned_cols=42  Identities=17%  Similarity=0.245  Sum_probs=27.2

Q ss_pred             HHhcHHHHHHHHHHHHHhh----ccccEEEecCCCCChhHHHHHHH
Q 018283           27 NAQTAEIERRIEQETKAEK----HIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        27 ~~~s~~id~~l~~~~~~~~----~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ++....|+-.|+.-....+    ..-.+||.|++|+|||++++.+.
T Consensus        14 ~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala   59 (258)
T d1e32a2          14 AQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA   59 (258)
T ss_dssp             HHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHH
Confidence            3444455555554322221    12359999999999999999875

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.84  E-value=0.058  Score=43.51  Aligned_cols=20  Identities=20%  Similarity=0.325  Sum_probs=17.5

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      =+++.|++|||||+|+-|+.
T Consensus        25 v~~i~G~~GsGKT~l~l~la   44 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLA   44 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46788999999999999874

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=90.70  E-value=0.059  Score=46.35  Aligned_cols=20  Identities=30%  Similarity=0.541  Sum_probs=18.2

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      .+||.|++|+|||++++.+.
T Consensus        47 ~iLL~GppGtGKT~la~~iA   66 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIA   66 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHH
Confidence            49999999999999999874

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.69  E-value=0.056  Score=46.98  Aligned_cols=24  Identities=38%  Similarity=0.595  Sum_probs=20.5

Q ss_pred             EEEecCCCCChhHHHHHHHHhcCC
Q 018283           50 LLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      -+|+|+.||||||+++.+..+.+.
T Consensus        27 nvlvG~NgsGKS~iL~Ai~~~lg~   50 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIKWVFGE   50 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHHHTSCC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCC
Confidence            368899999999999999877654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.63  E-value=0.062  Score=44.74  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=18.3

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      -.+++.|++|+||||+++.+.
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~   54 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALT   54 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHH
Confidence            358999999999999998873

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.60  E-value=0.061  Score=44.62  Aligned_cols=20  Identities=25%  Similarity=0.336  Sum_probs=17.4

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      =++|.|++|||||||+-|+.
T Consensus        36 ~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            47788999999999999873

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=90.30  E-value=0.12  Score=45.94  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=19.8

Q ss_pred             hccccEEEecCCCCChhHHHHHHH
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~   68 (358)
                      +....||+.|+.||||||+++.+-
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~  187 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIM  187 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHG
T ss_pred             HhCCCEEEEeeccccchHHHHHHh
Confidence            344469999999999999998763

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.11  E-value=0.15  Score=42.04  Aligned_cols=22  Identities=23%  Similarity=0.499  Sum_probs=18.9

Q ss_pred             cccEEEecCCCCChhHHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~   68 (358)
                      ...+|+.|+.|+||||+++.+.
T Consensus        35 ~~~lLl~Gp~G~GKttl~~~la   56 (227)
T d1sxjc2          35 LPHLLFYGPPGTGKTSTIVALA   56 (227)
T ss_dssp             CCCEEEECSSSSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHH
Confidence            3469999999999999999873

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.11  E-value=0.075  Score=43.67  Aligned_cols=19  Identities=21%  Similarity=0.352  Sum_probs=16.5

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      |++-|..||||||+++.+.
T Consensus         5 IviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5666999999999999875

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=89.97  E-value=0.096  Score=46.23  Aligned_cols=27  Identities=22%  Similarity=0.270  Sum_probs=21.4

Q ss_pred             hccccEEEecCCCCChhHHHHHHHHhc
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~~l~   71 (358)
                      +..+=|.+-|++||||||+.+.++.+.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL  104 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHH
Confidence            345567788999999999999886543

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.87  E-value=0.076  Score=44.42  Aligned_cols=20  Identities=20%  Similarity=0.255  Sum_probs=17.5

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      =++|.|++|||||||.-|+-
T Consensus        38 ~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            47888999999999998873

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.73  E-value=0.082  Score=43.88  Aligned_cols=21  Identities=19%  Similarity=0.382  Sum_probs=18.3

Q ss_pred             cccEEEecCCCCChhHHHHHH
Q 018283           47 IQKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~   67 (358)
                      .-.+||.|++|+||||+++-+
T Consensus        36 ~~~~ll~Gp~G~GKTt~a~~l   56 (224)
T d1sxjb2          36 MPHMIISGMPGIGKTTSVHCL   56 (224)
T ss_dssp             CCCEEEECSTTSSHHHHHHHH
T ss_pred             CCeEEEECCCCCCchhhHHHH
Confidence            346999999999999998876

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=89.50  E-value=0.089  Score=45.47  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=21.5

Q ss_pred             hccccEEEecCCCCChhHHHHHHH
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~   68 (358)
                      ...++|+++|-+++|||||++.++
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~  133 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLA  133 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCceEEEEEecCccchhhhhhhhh
Confidence            356899999999999999999885

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=89.28  E-value=0.092  Score=43.13  Aligned_cols=30  Identities=30%  Similarity=0.128  Sum_probs=21.5

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcCCCCCHH
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEA   78 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~~~f~~~   78 (358)
                      =|.|.|..||||||+++.++...-+-|+.+
T Consensus         4 iIgITG~igSGKStv~~~l~~~G~~vidaD   33 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTDLGVPLVDAD   33 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTTTCCEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCeEEEch
Confidence            466899999999999998874333334433

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.24  E-value=0.054  Score=45.97  Aligned_cols=19  Identities=26%  Similarity=0.160  Sum_probs=15.6

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      +++.|++|+||||+++.+.
T Consensus        49 l~l~GppGtGKT~l~~~l~   67 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTV   67 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHH
Confidence            3456999999999998863

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.84  E-value=0.094  Score=45.13  Aligned_cols=20  Identities=30%  Similarity=0.474  Sum_probs=18.5

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      .|||.|++|+|||++++.+.
T Consensus        43 giLL~Gp~GtGKT~l~~ala   62 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIA   62 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcchhHHHHHH
Confidence            59999999999999999985

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.75  E-value=0.072  Score=44.37  Aligned_cols=21  Identities=33%  Similarity=0.409  Sum_probs=17.8

Q ss_pred             cEEEecCCCCChhHHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~   69 (358)
                      .|++-|..||||||+++.+..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467779999999999998854

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.46  E-value=0.12  Score=43.22  Aligned_cols=20  Identities=35%  Similarity=0.346  Sum_probs=17.0

Q ss_pred             EEEecCCCCChhHHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIKL   69 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~   69 (358)
                      |++=|..||||||+++.+..
T Consensus         5 IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           5 LSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            45669999999999999864

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=88.32  E-value=0.13  Score=46.85  Aligned_cols=37  Identities=24%  Similarity=0.406  Sum_probs=26.5

Q ss_pred             hcHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHH
Q 018283           29 QTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        29 ~s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~   67 (358)
                      |..+|++.+.--..  +..-.+||||++|+|||+++.-+
T Consensus        27 r~~ei~~~~~~L~r--~~k~n~llvG~~GvGKtaiv~~l   63 (387)
T d1qvra2          27 RDEEIRRVIQILLR--RTKNNPVLIGEPGVGKTAIVEGL   63 (387)
T ss_dssp             CHHHHHHHHHHHHC--SSCCCCEEEECTTSCHHHHHHHH
T ss_pred             cHHHHHHHHHHHhc--CCCCCCeEECCCCCCHHHHHHHH
Confidence            45567776665432  23446899999999999999865

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=88.26  E-value=0.13  Score=42.40  Aligned_cols=21  Identities=38%  Similarity=0.379  Sum_probs=18.0

Q ss_pred             EEEecCCCCChhHHHHHHHHh
Q 018283           50 LLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l   70 (358)
                      |.|.|..||||||+++.+..+
T Consensus         6 IgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEECCCcCCHHHHHHHHHHC
Confidence            558999999999999988644

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=88.22  E-value=0.32  Score=43.74  Aligned_cols=26  Identities=23%  Similarity=0.420  Sum_probs=21.3

Q ss_pred             cccEEEecCCCCChhHHHHHHHHhcC
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l~~   72 (358)
                      .-.+|++|+.|||||-++|++..+..
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhcc
Confidence            34599999999999999999854443

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.07  E-value=0.12  Score=42.62  Aligned_cols=19  Identities=32%  Similarity=0.513  Sum_probs=15.8

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      |++-|..||||||.++.+.
T Consensus         6 I~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5555999999999988873

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=87.88  E-value=0.13  Score=42.91  Aligned_cols=20  Identities=25%  Similarity=0.411  Sum_probs=17.6

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      =++|.|++|||||+|+.|+-
T Consensus        28 l~li~G~pGsGKT~l~~qia   47 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFV   47 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            47888999999999999973

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=87.68  E-value=0.13  Score=42.39  Aligned_cols=20  Identities=30%  Similarity=0.227  Sum_probs=17.3

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      =++|.|++|+|||+|+-|+.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            36788999999999999873

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=87.61  E-value=0.1  Score=46.17  Aligned_cols=24  Identities=33%  Similarity=0.542  Sum_probs=20.6

Q ss_pred             cccEEEecCCCCChhHHHHHHHHh
Q 018283           47 IQKLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        47 ~~killlG~~~sGKSTi~kq~~~l   70 (358)
                      .-.|||.|++|+||||+++.+..+
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred             CCeEEEECCCCccHHHHHHHHHHh
Confidence            347999999999999999998544

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=87.54  E-value=0.13  Score=45.49  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=19.0

Q ss_pred             cEEEecCCCCChhHHHHHHHHh
Q 018283           49 KLLLLGAGESGKSTIFKQIKLL   70 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l   70 (358)
                      -+|++|++|+|||.+++++...
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhh
Confidence            4889999999999999998533

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=87.46  E-value=0.15  Score=40.29  Aligned_cols=21  Identities=24%  Similarity=0.290  Sum_probs=17.7

Q ss_pred             ccEEEecCCCCChhHHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~~   68 (358)
                      .=|+|-|+-|||||||+|.+-
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~   54 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGML   54 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEecCCCccHHHHHHHHH
Confidence            347788999999999999863

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.42  E-value=0.13  Score=43.04  Aligned_cols=18  Identities=39%  Similarity=0.595  Sum_probs=15.7

Q ss_pred             EEEecCCCCChhHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~   67 (358)
                      .++-|.-||||||+++++
T Consensus         6 ~iitGFLGaGKTTll~~l   23 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHI   23 (222)
T ss_dssp             EEEEESSSSSCHHHHHHH
T ss_pred             EEEeeCCCCCHHHHHHHH
Confidence            467799999999999986

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=87.29  E-value=0.15  Score=41.05  Aligned_cols=20  Identities=25%  Similarity=0.350  Sum_probs=17.0

Q ss_pred             ccEEEecCCCCChhHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~   67 (358)
                      .-||+.|++|+||||+.-.+
T Consensus        15 ~gvl~~G~sG~GKStlal~l   34 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALEL   34 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHH
Confidence            35899999999999998654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=87.17  E-value=0.15  Score=41.08  Aligned_cols=20  Identities=30%  Similarity=0.332  Sum_probs=17.1

Q ss_pred             ccEEEecCCCCChhHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~   67 (358)
                      .-||+.|++|+||||+.-.+
T Consensus        16 ~gvli~G~sG~GKS~lal~l   35 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDL   35 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHH
Confidence            35899999999999998664

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.10  E-value=0.15  Score=42.42  Aligned_cols=20  Identities=15%  Similarity=0.165  Sum_probs=17.7

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      =++|.|++|+|||+|.-|+.
T Consensus        39 ~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47888999999999999884

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=86.93  E-value=0.1  Score=45.55  Aligned_cols=20  Identities=20%  Similarity=0.348  Sum_probs=14.6

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      =|.+-|++||||||+.+.+.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            37788999999999999875

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.44  E-value=0.4  Score=40.50  Aligned_cols=39  Identities=18%  Similarity=0.278  Sum_probs=28.4

Q ss_pred             cHHHHHHHHHHHHHhhccccEEEecCCCCChhHHHHHHH
Q 018283           30 TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        30 s~~id~~l~~~~~~~~~~~killlG~~~sGKSTi~kq~~   68 (358)
                      |..+-+.+++-++......-|+|.|..|+||+++.+.+.
T Consensus         6 S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih   44 (247)
T d1ny5a2           6 SPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIH   44 (247)
T ss_dssp             SHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHH
Confidence            445555555544445567789999999999999988763

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.70  E-value=0.43  Score=39.00  Aligned_cols=19  Identities=16%  Similarity=0.296  Sum_probs=17.3

Q ss_pred             cEEEecCCCCChhHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~   67 (358)
                      -+|+.|+.|+||||+++.+
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~   44 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYAL   44 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHH
Confidence            4899999999999999876

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.25  E-value=0.23  Score=41.01  Aligned_cols=19  Identities=26%  Similarity=0.438  Sum_probs=16.5

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      |++=|..||||||.++.+.
T Consensus         6 I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            6677999999999998874

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.14  E-value=0.23  Score=44.66  Aligned_cols=22  Identities=27%  Similarity=0.576  Sum_probs=19.3

Q ss_pred             EEecCCCCChhHHHHHHHHhcC
Q 018283           51 LLLGAGESGKSTIFKQIKLLFQ   72 (358)
Q Consensus        51 lllG~~~sGKSTi~kq~~~l~~   72 (358)
                      +++|+.|||||||+..+..+.+
T Consensus        29 ~i~G~NGsGKS~ileAi~~~lg   50 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAISFVLG   50 (427)
T ss_dssp             EEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEECCCCCCHHHHHHHHHHHhC
Confidence            6889999999999999987653

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=84.82  E-value=0.38  Score=43.18  Aligned_cols=25  Identities=28%  Similarity=0.283  Sum_probs=20.5

Q ss_pred             cEEEecCCCCChhHHHHHHHHhcCC
Q 018283           49 KLLLLGAGESGKSTIFKQIKLLFQT   73 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~~l~~~   73 (358)
                      -+|+.|++|+|||++++.+....+.
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~~~~~  180 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLELCGG  180 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCC
Confidence            4899999999999999988544443

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=84.76  E-value=0.18  Score=43.72  Aligned_cols=29  Identities=24%  Similarity=0.455  Sum_probs=19.4

Q ss_pred             cEEEecCCCCChhHHHHH-H-HHhcCCCCCH
Q 018283           49 KLLLLGAGESGKSTIFKQ-I-KLLFQTGFDE   77 (358)
Q Consensus        49 killlG~~~sGKSTi~kq-~-~~l~~~~f~~   77 (358)
                      -++|.|++||||||.+-. + +++...+..+
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p   56 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLMAEKHVAP   56 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHHHTTCCCG
T ss_pred             CEEEEecCCccHHHHHHHHHHHHHHcCCCCH
Confidence            589999999999987533 2 3444443433

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.40  E-value=0.53  Score=39.17  Aligned_cols=18  Identities=28%  Similarity=0.495  Sum_probs=16.4

Q ss_pred             EEEecCCCCChhHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~   67 (358)
                      +|+.|++|+||||+++.+
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~   54 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLL   54 (239)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            788899999999998876

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=84.33  E-value=0.25  Score=40.34  Aligned_cols=19  Identities=26%  Similarity=0.363  Sum_probs=16.8

Q ss_pred             cEEEecCCCCChhHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~   67 (358)
                      =+++.|++|+|||+|+-|+
T Consensus        28 ~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHH
Confidence            4678899999999999886

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=84.33  E-value=0.26  Score=39.31  Aligned_cols=20  Identities=25%  Similarity=0.338  Sum_probs=16.8

Q ss_pred             ccEEEecCCCCChhHHHHHH
Q 018283           48 QKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        48 ~killlG~~~sGKSTi~kq~   67 (358)
                      .-||+.|++|+||||+.-.+
T Consensus        16 ~gvli~G~sg~GKS~la~~l   35 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALEL   35 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHH
Confidence            46899999999999987544

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.95  E-value=0.31  Score=42.35  Aligned_cols=36  Identities=25%  Similarity=0.183  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHh-hccccEEEecCCCCChhHHHHHH
Q 018283           32 EIERRIEQETKAE-KHIQKLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        32 ~id~~l~~~~~~~-~~~~killlG~~~sGKSTi~kq~   67 (358)
                      -+++.+..-.+.. +..+=|.|-|+.||||||+...+
T Consensus        11 ~~~~~~~~~~~~~~~~P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          11 FLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             HHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCEEEEeECCCCCCHHHHHHHH
Confidence            3445554432222 23344557799999999999876

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=83.51  E-value=0.21  Score=42.87  Aligned_cols=16  Identities=31%  Similarity=0.538  Sum_probs=14.0

Q ss_pred             cEEEecCCCCChhHHH
Q 018283           49 KLLLLGAGESGKSTIF   64 (358)
Q Consensus        49 killlG~~~sGKSTi~   64 (358)
                      -++|+|++||||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4889999999999864

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.08  E-value=0.3  Score=41.02  Aligned_cols=19  Identities=37%  Similarity=0.594  Sum_probs=16.7

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      ++|-|+..+||||++|++-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            5677999999999999973

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=83.01  E-value=0.35  Score=40.38  Aligned_cols=19  Identities=37%  Similarity=0.625  Sum_probs=17.1

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      ++|-|+..+||||++|++-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6788999999999999973

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=82.51  E-value=0.32  Score=41.26  Aligned_cols=20  Identities=25%  Similarity=0.371  Sum_probs=17.2

Q ss_pred             cEEEecCCCCChhHHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~~   68 (358)
                      =+++.|.+|+|||||+.|+-
T Consensus        37 l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            36788999999999999873

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=82.41  E-value=0.31  Score=44.26  Aligned_cols=19  Identities=37%  Similarity=0.702  Sum_probs=17.0

Q ss_pred             cEEEecCCCCChhHHHHHH
Q 018283           49 KLLLLGAGESGKSTIFKQI   67 (358)
Q Consensus        49 killlG~~~sGKSTi~kq~   67 (358)
                      +++++|++|||||++++.+
T Consensus        52 H~~I~G~tGsGKT~~l~~l   70 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLREL   70 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHH
Confidence            5999999999999998765

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.24  E-value=0.38  Score=40.80  Aligned_cols=23  Identities=35%  Similarity=0.628  Sum_probs=17.8

Q ss_pred             hccccEEEe-cCCCCChhHHHHHH
Q 018283           45 KHIQKLLLL-GAGESGKSTIFKQI   67 (358)
Q Consensus        45 ~~~~killl-G~~~sGKSTi~kq~   67 (358)
                      +...||+++ |-||+||||+.=.+
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHH
Confidence            456677766 99999999985544

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=82.10  E-value=0.34  Score=40.97  Aligned_cols=19  Identities=32%  Similarity=0.399  Sum_probs=16.7

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      .+|.|++|+|||||+-|+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5688999999999998874

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=80.80  E-value=0.42  Score=41.44  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=20.8

Q ss_pred             hccccEEEecCCCCChhHHHHHHH
Q 018283           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        45 ~~~~killlG~~~sGKSTi~kq~~   68 (358)
                      -+.-|++++|+.|+|||+|+.++.
T Consensus        41 grGQr~~I~g~~g~GKT~l~~~i~   64 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLLQNIA   64 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHHHHHH
T ss_pred             cCCCeeeEeCCCCCCHHHHHHHHH
Confidence            356699999999999999998873

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=80.57  E-value=0.97  Score=37.01  Aligned_cols=19  Identities=16%  Similarity=0.490  Sum_probs=17.0

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      +.|.|++|+|||.|+..+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~   57 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAG   57 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            8899999999999998763

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=80.27  E-value=0.52  Score=38.99  Aligned_cols=22  Identities=32%  Similarity=0.385  Sum_probs=18.0

Q ss_pred             EEEecCCCCChhHHHHHHHHhc
Q 018283           50 LLLLGAGESGKSTIFKQIKLLF   71 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~~l~   71 (358)
                      |.|.|.-||||||+.+.+.--|
T Consensus         4 IgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           4 IFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            5677999999999999885433

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=80.11  E-value=0.43  Score=42.09  Aligned_cols=19  Identities=26%  Similarity=0.656  Sum_probs=16.1

Q ss_pred             EEEecCCCCChhHHHHHHH
Q 018283           50 LLLLGAGESGKSTIFKQIK   68 (358)
Q Consensus        50 illlG~~~sGKSTi~kq~~   68 (358)
                      +|+.|++|+|||.+.+.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala  144 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALG  144 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHH
Confidence            4456999999999999874