Citrus Sinensis ID: 018290

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MGNFQLKLVLLLFTVCAALSTLSTAQDFKCSAQTAARCQALVGYLPPNKTTISEIQSLFTVKNLRSILGANNFPPGTPRNFSVPAQKPIKVPIHCICSNGTGVSDKVPVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPCSCDDVDNAKVVHYAHVVEEGSSFALIAQKFGTDRDTLMKLNGIHDDSKLIAGEPLDVPLKACNSSIKADSFDNYLRVANGTYTFTANSCVKCQCDATNNWTLQCKPSQFQPSSPNSRWKTCPSMLCGDSESLSIGNTTTSNNCNRTTCEYAGYNNLSILTTLNSLSTCPSPSNNASRIGSWNLLLISIFLVLLHFHLIQ
cccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEccccccHHHHHHHHccccHHHHHHHccccccccccccccccccEEEcccccccccccccccccEEEEcccccHHHHHHHHccccccHHHHHHHcccccccccccccEEEEccccccccccccEEEEEEEEEcccccHHHHHHHHcccHHHHHHHHccccccccccccEEEEcccccccccccccccccEEEcccEEEEEEccEEEEEccccccccEEEcccccccccccccccccccccccccccEEEcccccccccccEEEEEccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHcc
ccccccHHHHHEEEEEccccccccccccEccccccccccEEEEEEccccccHHHHHHHHccccHHHHHHHcccccccccccccccccEEEEEEEcEcccccccccccEEEEEcccccHHHHHHHHHcccccHHHHHHHcccccccccccccEEEEEccccccccccccEEEEEEEEcccccHHHHHHHHcccHHHHHHHcccccccccccccEEEEEcccccccccccccccccEccccEEEEEcccEEEEEcccccccEEEEEcccccccccccccccccccccccccccEEcccccccccccEEEEEccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHcc
MGNFQLKLVLLLFTVCAALstlstaqdfkCSAQTAARCQALvgylppnkttiSEIQSLFTVKNLRSilgannfppgtprnfsvpaqkpikvpihcicsngtgvsdkvpvytvkkddgldFIARTIFGQLLKYQKIVeannisnpdliqigqnltiplpcscddvdnakVVHYAHVVEEGSSFALIAQKfgtdrdtlmklngihddskliagepldvplkacnssikadsfdnyLRVANGTytftanscvkcqcdatnnwtlqckpsqfqpsspnsrwktcpsmlcgdseslsigntttsnncnrttceyagynnLSILTTlnslstcpspsnnasrigsWNLLLISIFLVLLHFHLIQ
MGNFQLKLVLLLFTVCAALSTLSTAQDFKCSAQTAARCQALVGYLPPNKTTISEIQSLFTVKNLRSILGANNFPPGTPRNFSVPAQKPIKVPIHCICSngtgvsdkvpvytvkkddglDFIARTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPCSCDDVDNAKVVHYAHVVEEGSSFALIAQKFGTDRDTLMKLNGIHDDSKLIAGEPLDVPLKACNSSIKADSFDNYLRVANGTYTFTANSCVKCQCDATNNWTLQCKPSQFQPSSPNSRWKTCPSMLCGDSESLSIGNTTTSNNCNRTTCEYAGYNNLSILTTLNSLSTCPSPSNNASRIGSWNLLLISIFLVLLHFHLIQ
MGNFQLKLVLLLFTVCAALSTLSTAQDFKCSAQTAARCQALVGYLPPNKTTISEIQSLFTVKNLRSILGANNFPPGTPRNFSVPAQKPIKVPIHCICSNGTGVSDKVPVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPCSCDDVDNAKVVHYAHVVEEGSSFALIAQKFGTDRDTLMKLNGIHDDSKLIAGEPLDVPLKACNSSIKADSFDNYLRVANGTYTFTANSCVKCQCDATNNWTLQCKPSQFQPSSPNSRWKTCPSMLCGDSESLSIGntttsnncnrttcEYAGYnnlsilttlnslstCPSPSNNASRIGSWNlllisiflvllhfhliQ
***FQLKLVLLLFTVCAALSTLSTAQDFKCSAQTAARCQALVGYLPPNKTTISEIQSLFTVKNLRSILGANNFPPGTPRNFSVPAQKPIKVPIHCICSNGTGVSDKVPVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPCSCDDVDNAKVVHYAHVVEEGSSFALIAQKFGTDRDTLMKLNGIHDDSKLIAGEPLDVPLKACNSSIKADSFDNYLRVANGTYTFTANSCVKCQCDATNNWTLQCK******************MLC*******IGNTTTSNNCNRTTCEYAGYNNLSILTTLNSLSTC******ASRIGSWNLLLISIFLVLLHFHLI*
**NFQLKLVLLLFTVCAALS*****************CQALVGYLPPNKTTISEIQSLFTVKNLRSILGANNFPPGTPRNFSVPAQKPIKVPIHCIC******SDKVPVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPCSC******KVVHYAHVVEEGSSFALIAQKFGTDRDTLMKLNGIHDDSKLIAGEPLDVPLKA*************LRVANGTYTFTANSCVKCQCDATNNWTLQCKPSQF************P*MLCGDSESLSIGNTTTSNNCNRTTCEYAGYNNLSILTT*****************GSWNLLLISIFLVLLHFHLIQ
MGNFQLKLVLLLFTVCAALSTLSTAQDFKCSAQTAARCQALVGYLPPNKTTISEIQSLFTVKNLRSILGANNFPPGTPRNFSVPAQKPIKVPIHCICSNGTGVSDKVPVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPCSCDDVDNAKVVHYAHVVEEGSSFALIAQKFGTDRDTLMKLNGIHDDSKLIAGEPLDVPLKACNSSIKADSFDNYLRVANGTYTFTANSCVKCQCDATNNWTLQCKP*************TCPSMLCGDSESLSIGNTTTSNNCNRTTCEYAGYNNLSILTTLNSLSTCPSPSNNASRIGSWNLLLISIFLVLLHFHLIQ
**NFQLKLVLLLFTVCAALSTLSTAQDFKCSAQTAARCQALVGYLPPNKTTISEIQSLFTVKNLRSILGANNFPPGTPRNFSVPAQKPIKVPIHCICSNGTGVSDKVPVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPCSCDDVDNAKVVHYAHVVEEGSSFALIAQKFGTDRDTLMKLNGIHDDSKLIAGEPLDVPLKACNSSIKADSFDNYLRVANGTYTFTANSCVKCQCDATNNWTLQCKPSQFQPSSPNSRWKTCPSMLCGDSESLSIGNTTTSNNCNRTTCEYAGYNNLSILTTLNSLSTCPSPSNNASRIGSWNLLLISIFLVLLHFHLIQ
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHi
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGNFQLKLVLLLFTVCAALSTLSTAQDFKCSAQTAARCQALVGYLPPNKTTISEIQSLFTVKNLRSILGANNFPPGTPRNFSVPAQKPIKVPIHCICSNGTGVSDKVPVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPCSCDDVDNAKVVHYAHVVEEGSSFALIAQKFGTDRDTLMKLNGIHDDSKLIAGEPLDVPLKACNSSIKADSFDNYLRVANGTYTFTANSCVKCQCDATNNWTLQCKPSQFQPSSPNSRWKTCPSMLCGDSESLSIGNTTTSNNCNRTTCEYAGYNNLSILTTLNSLSTCPSPSNNASRIGSWNLLLISIFLVLLHFHLIQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query358 2.2.26 [Sep-21-2011]
O23006350 LysM domain-containing GP yes no 0.918 0.94 0.491 1e-80
Q8H8C7356 Chitin elicitor-binding p no no 0.874 0.879 0.379 3e-56
Q93ZH0416 LysM domain-containing GP no no 0.877 0.754 0.345 2e-35
Q6NPN4423 LysM domain-containing GP no no 0.891 0.754 0.310 2e-30
Q9RVY3253 Uncharacterized protein D yes no 0.134 0.189 0.583 1e-07
O64825 612 LysM domain receptor-like no no 0.477 0.279 0.275 9e-06
Q8CMN2324 N-acetylmuramoyl-L-alanin yes no 0.284 0.314 0.342 0.0002
Q5HRU2324 N-acetylmuramoyl-L-alanin yes no 0.284 0.314 0.342 0.0002
>sp|O23006|LYM2_ARATH LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=LYM2 PE=1 SV=1 Back     alignment and function desciption
 Score =  300 bits (767), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 172/350 (49%), Positives = 224/350 (64%), Gaps = 21/350 (6%)

Query: 4   FQLKLVLLLFTVCAALSTLSTAQDFKCSAQTAARCQALVGYLPPNKTTISEIQSLFTVKN 63
           F L  +L+  +    LS   T  +F CS  T+  CQ+LVGY   N TT+  IQ+LF VKN
Sbjct: 6   FTLLGLLVSLSFFLTLSAQMTG-NFNCSGSTST-CQSLVGYSSKNATTLRNIQTLFAVKN 63

Query: 64  LRSILGANNFPPGTPRNFSVPAQKPIKVPIHCICSNGTGVSDKVPVYTVKKDDGLDFIAR 123
           LRSILGANN P  T R+  V   + ++VPIHC CSNGTGVS++   YT+KKDD L F+A 
Sbjct: 64  LRSILGANNLPLNTSRDQRVNPNQVVRVPIHCSCSNGTGVSNRDIEYTIKKDDILSFVAT 123

Query: 124 TIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPCSCDDVDNAKVVHYAHVVEEGSSFA 183
            IFG L+ Y+KI E N I +P+ I+IGQ   IPLPCSCD ++   VVHYAHVV+ GSS  
Sbjct: 124 EIFGGLVTYEKISEVNKIPDPNKIEIGQKFWIPLPCSCDKLNGEDVVHYAHVVKLGSSLG 183

Query: 184 LIAQKFGTDRDTLMKLNGIHDDSKLIAGEPLDVPLKACNSSIKADSFDNYLRVANGTYTF 243
            IA +FGTD  TL +LNGI  DS+L+A +PLDVPLKAC+SS++ DS D  L ++N +Y F
Sbjct: 184 EIAAQFGTDNTTLAQLNGIIGDSQLLADKPLDVPLKACSSSVRKDSLDAPLLLSNNSYVF 243

Query: 244 TANSCVKCQCDATNNWTLQCK-PSQFQPSSPNSRWKTCPSMLCGDSESLSIGNTTTSNNC 302
           TAN+CVKC CDA  NWTL C+  S+ +PS+    W+TCP     D   L+        +C
Sbjct: 244 TANNCVKCTCDALKNWTLSCQSSSEIKPSN----WQTCPPFSQCDGALLNA-------SC 292

Query: 303 NR-TTCEYAGYNNLSILTTLNSLSTCP---SPSNNASRI-GSWNLLLISI 347
            +   C YAGY+N +I TT +    CP    P N AS +  S+N +++ I
Sbjct: 293 RQPRDCVYAGYSNQTIFTTAS--PACPDSAGPDNYASTLSSSFNFVIVLI 340

Arabidopsis thaliana (taxid: 3702)
>sp|Q8H8C7|CEBIP_ORYSJ Chitin elicitor-binding protein OS=Oryza sativa subsp. japonica GN=CEBIP PE=1 SV=1 Back     alignment and function description
>sp|Q93ZH0|LYM1_ARATH LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana GN=LYM1 PE=1 SV=1 Back     alignment and function description
>sp|Q6NPN4|LYM3_ARATH LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=LYM3 PE=1 SV=1 Back     alignment and function description
>sp|Q9RVY3|Y888_DEIRA Uncharacterized protein DR_0888 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_0888 PE=1 SV=1 Back     alignment and function description
>sp|O64825|LYK4_ARATH LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana GN=LYK4 PE=1 SV=1 Back     alignment and function description
>sp|Q8CMN2|SLE1_STAES N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sle1 PE=3 SV=1 Back     alignment and function description
>sp|Q5HRU2|SLE1_STAEQ N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sle1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query358
255569692361 LysM domain GPI-anchored protein 2 precu 0.932 0.925 0.517 9e-95
359474985353 PREDICTED: lysM domain-containing GPI-an 0.963 0.977 0.532 3e-93
297744533367 unnamed protein product [Vitis vinifera] 0.896 0.874 0.547 1e-91
225428159357 PREDICTED: lysM domain-containing GPI-an 0.868 0.871 0.556 2e-91
224078525312 predicted protein [Populus trichocarpa] 0.863 0.990 0.559 6e-91
224105073351 predicted protein [Populus trichocarpa] 0.966 0.985 0.541 2e-90
297832316356 peptidoglycan-binding LysM domain-contai 0.941 0.946 0.525 9e-90
449454275365 PREDICTED: lysM domain-containing GPI-an 0.969 0.950 0.490 7e-86
338815365354 RSI3 [Solanum tuberosum] 0.902 0.912 0.491 2e-84
28207683354 Erwinia induced protein 1 [Solanum tuber 0.902 0.912 0.488 3e-83
>gi|255569692|ref|XP_002525811.1| LysM domain GPI-anchored protein 2 precursor, putative [Ricinus communis] gi|223534898|gb|EEF36585.1| LysM domain GPI-anchored protein 2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  353 bits (905), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 178/344 (51%), Positives = 244/344 (70%), Gaps = 10/344 (2%)

Query: 22  LSTAQDFKCSAQTAARCQALVGYLPPNKTTISEIQSLFTVKNLRSILGANNFPPGTPRNF 81
           +ST+  FKC++ +++ C AL+ Y+PPN T++S +++LF+VKNLRSILGANN P  TP N 
Sbjct: 21  ISTSAPFKCTSSSSSTCHALIDYIPPNTTSLSSLKTLFSVKNLRSILGANNLPLSTPSNN 80

Query: 82  SVPAQKPIKVPIHCICSNGTGVSDKVPVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNI 141
           +VPAQ  IK+P  CICSNGTG+S+  P+Y V+  D LD IAR +F  L+ +Q+I   N+I
Sbjct: 81  NVPAQTTIKIPFPCICSNGTGISNSKPIYIVQPGDILDHIAREVFSGLVTFQEIAAVNSI 140

Query: 142 SNPDLIQIGQNLTIPLPCSCDDVDNAKVVHYAHVVEEGSSFALIAQKFGTDRDTLMKLNG 201
            + ++I+ GQ L IPLPCSCD+V   +VVHY H+VE GS+  +IA+++GT +D LM LN 
Sbjct: 141 PDANVIEAGQKLRIPLPCSCDEVGGERVVHYGHIVESGSTLEVIAEEYGTSKDILMSLNN 200

Query: 202 IHDDSKLIAGEPLDVPLKACNSSIKADSFDNYLRVANGTYTFTANSCVKCQCDATNNWTL 261
             +D+ L+AG+ LDVPL+ACNSS+   S D  L V NGTY FTANSCV+C+CD+ NNW L
Sbjct: 201 GVNDTSLLAGQILDVPLQACNSSVTTSSLDYPLLVPNGTYAFTANSCVRCKCDSANNWIL 260

Query: 262 QCKPSQFQPSSPNSRWKTCPSMLCGDSESLSIGNTTTSNNCNRTTCEYAGYNNLSILTTL 321
           QC+PS    +  NS W TCP M C  +++LSIGN+T +  CN TTC YAG++N +ILT L
Sbjct: 261 QCEPSGLTIA--NSTWSTCPPMKCDGADNLSIGNSTNA-GCNTTTCAYAGFSNQTILTAL 317

Query: 322 NSLSTCPSPS------NNASRIG-SWNLLLISIFLVLLHFHLIQ 358
            ++STCP+ +      N AS  G SW  L+IS+ L LL  + +Q
Sbjct: 318 ATVSTCPASTPGSGSDNYASSSGMSWKFLIISLHLFLLCVYPLQ 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359474985|ref|XP_002278760.2| PREDICTED: lysM domain-containing GPI-anchored protein 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744533|emb|CBI37795.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225428159|ref|XP_002278742.1| PREDICTED: lysM domain-containing GPI-anchored protein 2 [Vitis vinifera] gi|297744534|emb|CBI37796.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224078525|ref|XP_002305553.1| predicted protein [Populus trichocarpa] gi|222848517|gb|EEE86064.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224105073|ref|XP_002313676.1| predicted protein [Populus trichocarpa] gi|222850084|gb|EEE87631.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297832316|ref|XP_002884040.1| peptidoglycan-binding LysM domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329880|gb|EFH60299.1| peptidoglycan-binding LysM domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449454275|ref|XP_004144881.1| PREDICTED: lysM domain-containing GPI-anchored protein 2-like [Cucumis sativus] gi|449473230|ref|XP_004153824.1| PREDICTED: lysM domain-containing GPI-anchored protein 2-like [Cucumis sativus] gi|449500176|ref|XP_004161025.1| PREDICTED: lysM domain-containing GPI-anchored protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|338815365|gb|AEJ08745.1| RSI3 [Solanum tuberosum] Back     alignment and taxonomy information
>gi|28207683|gb|AAO32065.1| Erwinia induced protein 1 [Solanum tuberosum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query358
TAIR|locus:2827686350 LYP1 "LysM-containing receptor 0.899 0.92 0.482 7.3e-75
UNIPROTKB|Q8H8C7356 CEBIP "Chitin elicitor-binding 0.801 0.806 0.380 1.3e-50
TAIR|locus:2201143416 LYP2 "LysM-containing receptor 0.759 0.653 0.327 3.7e-32
TAIR|locus:2204720423 LYM3 "lysin-motif (LysM) domai 0.877 0.742 0.283 3.1e-28
TAIR|locus:2049029 612 LYK4 "LysM-containing receptor 0.539 0.315 0.257 2e-09
UNIPROTKB|G4N906162 MGG_10097 "Intracellular hypha 0.371 0.820 0.268 7.1e-06
TAIR|locus:2050987 664 LYK5 "LysM-containing receptor 0.513 0.277 0.252 5.4e-05
TAIR|locus:2827686 LYP1 "LysM-containing receptor protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 164/340 (48%), Positives = 206/340 (60%)

Query:     4 FQLKLVLLLFTVCAALSTLSTAQDFKCSAQTAARCQALVGYLPPNKTTISEIQSLFTVKN 63
             F L  +L+  +    LS   T  +F CS  T+  CQ+LVGY   N TT+  IQ+LF VKN
Sbjct:     6 FTLLGLLVSLSFFLTLSAQMTG-NFNCSGSTST-CQSLVGYSSKNATTLRNIQTLFAVKN 63

Query:    64 LRSILGANNFPPGTPRNFSVPAQKPIKVPIHCICSNGTGVSDKVPVYTVKKDDGLDFIAR 123
             LRSILGANN P  T R+  V   + ++VPIHC CSNGTGVS++   YT+KKDD L F+A 
Sbjct:    64 LRSILGANNLPLNTSRDQRVNPNQVVRVPIHCSCSNGTGVSNRDIEYTIKKDDILSFVAT 123

Query:   124 TIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPCSCDDVDNAKVVHYAHVVEEGSSFA 183
              IFG L+ Y+KI E N I +P+ I+IGQ   IPLPCSCD ++   VVHYAHVV+ GSS  
Sbjct:   124 EIFGGLVTYEKISEVNKIPDPNKIEIGQKFWIPLPCSCDKLNGEDVVHYAHVVKLGSSLG 183

Query:   184 LIAQKFGTDRDTLMKLNGIHDDSKLIAGEPLDVPLKACNSSIKADSFDNYLRVANGTYTF 243
              IA +FGTD  TL +LNGI  DS+L+A +PLDVPLKAC+SS++ DS D  L ++N +Y F
Sbjct:   184 EIAAQFGTDNTTLAQLNGIIGDSQLLADKPLDVPLKACSSSVRKDSLDAPLLLSNNSYVF 243

Query:   244 TANSCVKCQCDATNNWTLQCKPS-QFQPSSPNSRWKTCPSMLCGDSESLSIGXXXXXXXX 302
             TAN+CVKC CDA  NWTL C+ S + +PS+    W+TCP     D      G        
Sbjct:   244 TANNCVKCTCDALKNWTLSCQSSSEIKPSN----WQTCPPFSQCD------GALLNASCR 293

Query:   303 XXXXXEYAGYXXXXXXXXXXXXXXCPS---PSNNASRIGS 339
                   YAGY              CP    P N AS + S
Sbjct:   294 QPRDCVYAGYSNQTIFTTASPA--CPDSAGPDNYASTLSS 331
GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA;ISS
GO:0031225 "anchored to membrane" evidence=TAS
GO:0046658 "anchored to plasma membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0008061 "chitin binding" evidence=IDA
UNIPROTKB|Q8H8C7 CEBIP "Chitin elicitor-binding protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2201143 LYP2 "LysM-containing receptor protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204720 LYM3 "lysin-motif (LysM) domain protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049029 LYK4 "LysM-containing receptor-like kinase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4N906 MGG_10097 "Intracellular hyphae protein 1" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TAIR|locus:2050987 LYK5 "LysM-containing receptor-like kinase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O23006LYM2_ARATHNo assigned EC number0.49140.91890.94yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query358
PRK11198147 PRK11198, PRK11198, LysM domain/BON superfamily pr 1e-08
cd0011845 cd00118, LysM, Lysine Motif is a small domain invo 8e-08
smart0025744 smart00257, LysM, Lysin motif 2e-07
pfam0147643 pfam01476, LysM, LysM domain 1e-06
smart0025744 smart00257, LysM, Lysin motif 2e-05
pfam0147643 pfam01476, LysM, LysM domain 2e-05
COG1652269 COG1652, XkdP, Uncharacterized protein containing 4e-05
cd0011845 cd00118, LysM, Lysine Motif is a small domain invo 5e-05
>gnl|CDD|236880 PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional Back     alignment and domain information 
 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 110 YTVKKDDGLDFIARTIFGQLLKYQKIVEANN--ISNPDLIQIGQNLTIP 156
           YTVK  D L  IA+ ++G   KY KI EAN   + +PD I  GQ L IP
Sbjct: 98  YTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQVLRIP 146

Length = 147
>gnl|CDD|212030 cd00118, LysM, Lysine Motif is a small domain involved in binding peptidoglycan Back     alignment and domain information
>gnl|CDD|197609 smart00257, LysM, Lysin motif Back     alignment and domain information
>gnl|CDD|144899 pfam01476, LysM, LysM domain Back     alignment and domain information
>gnl|CDD|197609 smart00257, LysM, Lysin motif Back     alignment and domain information
>gnl|CDD|144899 pfam01476, LysM, LysM domain Back     alignment and domain information
>gnl|CDD|224566 COG1652, XkdP, Uncharacterized protein containing LysM domain [Function unknown] Back     alignment and domain information
>gnl|CDD|212030 cd00118, LysM, Lysine Motif is a small domain involved in binding peptidoglycan Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 358
PRK06347592 autolysin; Reviewed 99.95
PRK06347592 autolysin; Reviewed 99.94
PRK10783456 mltD membrane-bound lytic murein transglycosylase 99.9
PRK13914481 invasion associated secreted endopeptidase; Provis 99.82
PRK10783456 mltD membrane-bound lytic murein transglycosylase 99.64
PF0147644 LysM: LysM domain; InterPro: IPR018392 This domain 99.25
COG1388124 LytE FOG: LysM repeat [Cell envelope biogenesis, o 99.19
PF0147644 LysM: LysM domain; InterPro: IPR018392 This domain 99.01
COG1388124 LytE FOG: LysM repeat [Cell envelope biogenesis, o 98.93
TIGR0289944 spore_safA spore coat assembly protein SafA. in wh 98.91
PRK14125103 cell division suppressor protein YneA; Provisional 98.89
cd0011846 LysM Lysin domain, found in a variety of enzymes i 98.88
PRK14125103 cell division suppressor protein YneA; Provisional 98.87
COG3858 423 Predicted glycosyl hydrolase [General function pre 98.8
PRK10871319 nlpD lipoprotein NlpD; Provisional 98.73
TIGR02907338 spore_VI_D stage VI sporulation protein D. SpoVID, 98.6
cd0011846 LysM Lysin domain, found in a variety of enzymes i 98.55
smart0025744 LysM Lysin motif. 98.55
TIGR0289944 spore_safA spore coat assembly protein SafA. in wh 98.54
PRK13914 481 invasion associated secreted endopeptidase; Provis 98.49
COG3858 423 Predicted glycosyl hydrolase [General function pre 98.43
PRK10871319 nlpD lipoprotein NlpD; Provisional 98.42
PRK11198147 LysM domain/BON superfamily protein; Provisional 98.31
TIGR02907338 spore_VI_D stage VI sporulation protein D. SpoVID, 98.22
PRK11198147 LysM domain/BON superfamily protein; Provisional 98.19
smart0025744 LysM Lysin motif. 98.14
COG1652269 XkdP Uncharacterized protein containing LysM domai 97.34
PRK10190310 L,D-transpeptidase; Provisional 97.12
PRK10260306 L,D-transpeptidase; Provisional 97.11
PRK10260306 L,D-transpeptidase; Provisional 97.04
TIGR0350574 FimV_core FimV N-terminal domain. This region is f 97.01
COG1652269 XkdP Uncharacterized protein containing LysM domai 96.94
PF0422585 OapA: Opacity-associated protein A LysM-like domai 96.82
PRK10190310 L,D-transpeptidase; Provisional 96.69
PF0422585 OapA: Opacity-associated protein A LysM-like domai 96.28
TIGR0350574 FimV_core FimV N-terminal domain. This region is f 96.25
PF0548960 Phage_tail_X: Phage Tail Protein X; InterPro: IPR0 96.21
PF0548960 Phage_tail_X: Phage Tail Protein X; InterPro: IPR0 94.95
PRK11649439 putative peptidase; Provisional 94.6
PRK11649 439 putative peptidase; Provisional 93.72
COG3061242 OapA Cell envelope opacity-associated protein A [C 92.04
COG3061242 OapA Cell envelope opacity-associated protein A [C 91.87
COG3170 755 FimV Tfp pilus assembly protein FimV [Cell motilit 91.59
COG3170 755 FimV Tfp pilus assembly protein FimV [Cell motilit 89.15
COG4784479 Putative Zn-dependent protease [General function p 89.01
KOG2850186 consensus Predicted peptidoglycan-binding protein, 87.29
PRK10838190 spr outer membrane lipoprotein; Provisional 87.08
COG4254339 Uncharacterized protein conserved in bacteria [Fun 82.44
COG0739277 NlpD Membrane proteins related to metalloendopepti 82.4
TIGR00247342 conserved hypothetical protein, YceG family. This 82.31
>PRK06347 autolysin; Reviewed Back     alignment and domain information 
Probab=99.95  E-value=6.7e-27  Score=241.73  Aligned_cols=167  Identities=20%  Similarity=0.246  Sum_probs=135.1

Q ss_pred             ccEEEECCCCCCHHHHHHHhCCCcHHHHHhcCCCCCCCCCCCcCCCCCeEEecccccCCCC--------------CccCC
Q 018290           40 ALVGYLPPNKTTISEIQSLFTVKNLRSILGANNFPPGTPRNFSVPAQKPIKVPIHCICSNG--------------TGVSD  105 (358)
Q Consensus        40 a~~~YtV~~GdTL~~IA~~fgvs~l~~L~~~N~L~~~~~~~~~L~~Gq~L~IP~~~~c~~~--------------~~~s~  105 (358)
                      .+..|+|++||||+.||++|||+ +++|+++|++..     +.|.+||.|+||........              .....
T Consensus       404 ~~~~ytVk~GDTL~sIA~kygVS-v~~L~~~N~l~s-----~~L~~Gq~L~IP~~~~~~~~t~~~s~~~~~~k~~s~~~~  477 (592)
T PRK06347        404 NAKVYTVVKGDSLWRIANNNKVT-IANLKSWNNLKS-----DFIYPGQKLKVSAGSTSNTNTSKPSTNTNTSKPSTNTNT  477 (592)
T ss_pred             CceeEEecCCCCHHHHHHHhCCC-HHHHHHHhCCCc-----ceeccCcEEEEecCCcccccccccccccccccccccccc
Confidence            35689999999999999999999 699999998752     57999999999964221000              00112


Q ss_pred             CcceEEEcCCCcHHHHHHHHhCCCccHHHHHHhcCCCCCCccCCCcEEEECCCCCcCCC--------Cccccceeeeeee
Q 018290          106 KVPVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPCSCDDV--------DNAKVVHYAHVVE  177 (358)
Q Consensus       106 ~~~~YtV~~GDTL~~IA~~~ygglvs~~~L~~~N~l~~~~~L~~Gq~L~IP~~~~~~~~--------~~~~~~~~~Y~V~  177 (358)
                      ....|+|++||||+.||++ |+  +++++|++||++.+ +.|++||+|.||........        .........|+|+
T Consensus       478 ~~~~YtVk~GDTL~sIAkk-yg--VSv~~L~~~N~l~s-~~L~~GQ~L~Ip~~~~~s~~~t~~~s~~~~~~~~~~~Y~Vk  553 (592)
T PRK06347        478 NAKVYTVAKGDSLWRIANN-NK--VTIANLKSWNNLKS-DFIYPGQKLKVSAGSTTNNTNTAKPSTNKPSNSTVKTYTVK  553 (592)
T ss_pred             cceeeeecCCCCHHHHHHH-HC--CCHHHHHHhcCCCc-ccccCCcEEEEecCcccccccccCCccCCccCccceeeecC
Confidence            3458999999999999999 99  99999999999875 68999999999975432110        0111234689999


Q ss_pred             cCChHHHHHHHhCCCHHHHhhhhCCCCCCCcCCCCeEEEC
Q 018290          178 EGSSFALIAQKFGTDRDTLMKLNGIHDDSKLIAGEPLDVP  217 (358)
Q Consensus       178 ~GDTL~~IA~kygvt~~~L~~~N~l~~~~~l~~Gq~L~IP  217 (358)
                      +|||||+||++||+++++|++||++.. +.|++||+|.|+
T Consensus       554 ~GDTL~sIA~KygvSv~~L~~~N~L~~-~~L~~GQ~L~I~  592 (592)
T PRK06347        554 KGDSLWAISRQYKTTVDNIKAWNKLTS-NMIHVGQKLTIK  592 (592)
T ss_pred             CCCcHHHHHHHhCCCHHHHHHhcCCCc-ccCCCCCEEecC
Confidence            999999999999999999999999975 789999999985

>PRK06347 autolysin; Reviewed Back     alignment and domain information
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional Back     alignment and domain information
>PRK13914 invasion associated secreted endopeptidase; Provisional Back     alignment and domain information
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional Back     alignment and domain information
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation [] Back     alignment and domain information
>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation [] Back     alignment and domain information
>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR02899 spore_safA spore coat assembly protein SafA Back     alignment and domain information
>PRK14125 cell division suppressor protein YneA; Provisional Back     alignment and domain information
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation Back     alignment and domain information
>PRK14125 cell division suppressor protein YneA; Provisional Back     alignment and domain information
>COG3858 Predicted glycosyl hydrolase [General function prediction only] Back     alignment and domain information
>PRK10871 nlpD lipoprotein NlpD; Provisional Back     alignment and domain information
>TIGR02907 spore_VI_D stage VI sporulation protein D Back     alignment and domain information
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation Back     alignment and domain information
>smart00257 LysM Lysin motif Back     alignment and domain information
>TIGR02899 spore_safA spore coat assembly protein SafA Back     alignment and domain information
>PRK13914 invasion associated secreted endopeptidase; Provisional Back     alignment and domain information
>COG3858 Predicted glycosyl hydrolase [General function prediction only] Back     alignment and domain information
>PRK10871 nlpD lipoprotein NlpD; Provisional Back     alignment and domain information
>PRK11198 LysM domain/BON superfamily protein; Provisional Back     alignment and domain information
>TIGR02907 spore_VI_D stage VI sporulation protein D Back     alignment and domain information
>PRK11198 LysM domain/BON superfamily protein; Provisional Back     alignment and domain information
>smart00257 LysM Lysin motif Back     alignment and domain information
>COG1652 XkdP Uncharacterized protein containing LysM domain [Function unknown] Back     alignment and domain information
>PRK10190 L,D-transpeptidase; Provisional Back     alignment and domain information
>PRK10260 L,D-transpeptidase; Provisional Back     alignment and domain information
>PRK10260 L,D-transpeptidase; Provisional Back     alignment and domain information
>TIGR03505 FimV_core FimV N-terminal domain Back     alignment and domain information
>COG1652 XkdP Uncharacterized protein containing LysM domain [Function unknown] Back     alignment and domain information
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein Back     alignment and domain information
>PRK10190 L,D-transpeptidase; Provisional Back     alignment and domain information
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein Back     alignment and domain information
>TIGR03505 FimV_core FimV N-terminal domain Back     alignment and domain information
>PF05489 Phage_tail_X: Phage Tail Protein X; InterPro: IPR008861 This entry is represented by Bacteriophage P2, GpX Back     alignment and domain information
>PF05489 Phage_tail_X: Phage Tail Protein X; InterPro: IPR008861 This entry is represented by Bacteriophage P2, GpX Back     alignment and domain information
>PRK11649 putative peptidase; Provisional Back     alignment and domain information
>PRK11649 putative peptidase; Provisional Back     alignment and domain information
>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG3170 FimV Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>COG3170 FimV Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>COG4784 Putative Zn-dependent protease [General function prediction only] Back     alignment and domain information
>KOG2850 consensus Predicted peptidoglycan-binding protein, contains LysM domain [General function prediction only] Back     alignment and domain information
>PRK10838 spr outer membrane lipoprotein; Provisional Back     alignment and domain information
>COG4254 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR00247 conserved hypothetical protein, YceG family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query358
4eby_A212 Chitin elicitor receptor kinase 1; pathogen-associ 5e-29
2l9y_A167 CVNH-LYSM lectin; carbohydrate, sugar binding prot 2e-10
2l9y_A167 CVNH-LYSM lectin; carbohydrate, sugar binding prot 3e-04
2djp_A77 Hypothetical protein SB145; LYSM, structural genom 4e-08
2djp_A77 Hypothetical protein SB145; LYSM, structural genom 3e-06
1e0g_A48 Membrane-bound lytic murein transglycosylase D; ce 2e-04
1e0g_A48 Membrane-bound lytic murein transglycosylase D; ce 7e-04
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A* Length = 212 Back     alignment and structure
 Score =  110 bits (277), Expect = 5e-29
 Identities = 40/197 (20%), Positives = 68/197 (34%), Gaps = 16/197 (8%)

Query: 38  CQALVGYLPPNKTTISEIQSLFTVK-------NLRSILGANNFPPGTPRNFSVPAQKPIK 90
             AL  Y   N TT+S I              N   IL  N           +     + 
Sbjct: 6   PLALASYYLENGTTLSVINQNLNSSIAPYDQINFDPILRYN---SNIKDKDRIQMGSRVL 62

Query: 91  VPIHCICSNGTGVSDKVPVYTVKKDDGLDFIARTIFGQLLKYQKIVEANNISNPDLIQIG 150
           VP  C C  G  +      Y+V+++D  + +A + +  L   + +   N       I + 
Sbjct: 63  VPFPCECQPGDFLGHNFS-YSVRQEDTYERVAISNYANLTTMESLQARNPF-PATNIPLS 120

Query: 151 QNLTIPLPCSCDD--VDNAKVVHYAHVVEEGSSFALIAQKFGTDRDTLMKLNGIHDDSKL 208
             L + + CSC D  V     +   + +    S + IA+  G   D L + N   + +  
Sbjct: 121 ATLNVLVNCSCGDESVSKDFGLFVTYPLRPEDSLSSIARSSGVSADILQRYNPGVNFNS- 179

Query: 209 IAGEPLDVPLKACNSSI 225
                + VP +  N + 
Sbjct: 180 -GNGIVYVPGRDPNGAF 195
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15} Length = 167 Back     alignment and structure
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15} Length = 167 Back     alignment and structure
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1 Length = 48 Back     alignment and structure
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1 Length = 48 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query358
4eby_A212 Chitin elicitor receptor kinase 1; pathogen-associ 100.0
4eby_A212 Chitin elicitor receptor kinase 1; pathogen-associ 99.85
2l9y_A167 CVNH-LYSM lectin; carbohydrate, sugar binding prot 99.54
2djp_A77 Hypothetical protein SB145; LYSM, structural genom 99.44
2gu1_A361 Zinc peptidase; alpha/beta, beta barrel, structura 99.42
2gu1_A361 Zinc peptidase; alpha/beta, beta barrel, structura 99.28
2l9y_A167 CVNH-LYSM lectin; carbohydrate, sugar binding prot 99.27
1e0g_A48 Membrane-bound lytic murein transglycosylase D; ce 99.24
2djp_A77 Hypothetical protein SB145; LYSM, structural genom 99.13
1e0g_A48 Membrane-bound lytic murein transglycosylase D; ce 98.99
4a1k_A165 Putative L, D-transpeptidase YKUD; transferase, pe 98.36
4a1k_A165 Putative L, D-transpeptidase YKUD; transferase, pe 97.96
3slu_A371 M23 peptidase domain protein; outer membrane, hydr 97.49
3slu_A371 M23 peptidase domain protein; outer membrane, hydr 97.27
2k1g_A135 Lipoprotein SPR; solution structure, bacterial lip 91.54
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A* Back     alignment and structure
Probab=100.00  E-value=5.2e-37  Score=280.72  Aligned_cols=183  Identities=23%  Similarity=0.333  Sum_probs=155.7

Q ss_pred             cccC-ccEEEECCCCCCHHHHHHHhCCCcH--------HHHHhcC-CCCCCCCCCCcCCCCCeEEecccccCCCCCccCC
Q 018290           36 ARCQ-ALVGYLPPNKTTISEIQSLFTVKNL--------RSILGAN-NFPPGTPRNFSVPAQKPIKVPIHCICSNGTGVSD  105 (358)
Q Consensus        36 ~~C~-a~~~YtV~~GdTL~~IA~~fgvs~l--------~~L~~~N-~L~~~~~~~~~L~~Gq~L~IP~~~~c~~~~~~s~  105 (358)
                      .+|+ ++..|+|++||||+.||++|+++ +        ++|+++| +|.    +.+.|.+||.|+||.+|.|.++... .
T Consensus         3 ~~C~~a~~~Y~V~~GDTL~~IA~~~~vs-v~~~~~~~~~~I~~~Np~l~----~~~~l~~Gq~L~IP~~~~~~~~~~~-~   76 (212)
T 4eby_A            3 TSCPLALASYYLENGTTLSVINQNLNSS-IAPYDQINFDPILRYNSNIK----DKDRIQMGSRVLVPFPCECQPGDFL-G   76 (212)
T ss_dssp             CCCSCEEEEEECCTTCCHHHHHHHTCCS-SSCCCSSCCHHHHTTCTTCS----CTTSCCTTCEEEEEECCEEETTTEE-E
T ss_pred             CCCccceEEEEeCCCCCHHHHHHHHCCC-chhccccCHHHHHHhccCCC----CcCccCCCCEEEEeccccccCCccc-c
Confidence            3899 99999999999999999999999 6        9999999 774    3478999999999999888654321 2


Q ss_pred             CcceEEEcCCCcHHHHH-HHHhCCCccHHHHHHhcCCCCCCccCCCcEEEECCCCCcCCCCccc--cceeeeeeecCChH
Q 018290          106 KVPVYTVKKDDGLDFIA-RTIFGQLLKYQKIVEANNISNPDLIQIGQNLTIPLPCSCDDVDNAK--VVHYAHVVEEGSSF  182 (358)
Q Consensus       106 ~~~~YtV~~GDTL~~IA-~~~ygglvs~~~L~~~N~l~~~~~L~~Gq~L~IP~~~~~~~~~~~~--~~~~~Y~V~~GDTL  182 (358)
                      ....|+|++||||+.|| ++ |++++++++|+++|++ +++.|++||+|.||..+.|+......  ....+|+|++||||
T Consensus        77 ~~~~Y~V~~GDTL~~IA~~~-y~~lvt~~~L~~~N~~-~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~~~~Y~V~~GDTL  154 (212)
T 4eby_A           77 HNFSYSVRQEDTYERVAISN-YANLTTMESLQARNPF-PATNIPLSATLNVLVNCSCGDESVSKDFGLFVTYPLRPEDSL  154 (212)
T ss_dssp             EEEEEECCTTCCHHHHHHTT-TTTSSCHHHHHHHCCS-CTTCCCTTCEEEEEEECCCCCTTTCSSCCCEEEEECCTTCCH
T ss_pred             CceEEEecCCCcHHHHHHHh-cCCCCCHHHHHHhcCC-CcccCCCCCEEEEcCCCcCCCcccccCCCCeEEEEECCCCcH
Confidence            34689999999999999 67 9999999999999994 55899999999999988776543222  23468999999999


Q ss_pred             HHHHHHhCCCHHHHhhhhCCCCCCCcCCCCeEEECCCCCCCCCCCC
Q 018290          183 ALIAQKFGTDRDTLMKLNGIHDDSKLIAGEPLDVPLKACNSSIKAD  228 (358)
Q Consensus       183 ~~IA~kygvt~~~L~~~N~l~~~~~l~~Gq~L~IP~~~~~s~~~~~  228 (358)
                      |+||++||+++++|++||++.+ ..+.+|+ |+||.+.++..+++.
T Consensus       155 ~~IA~~fgvsv~~L~~~N~~~~-~~~~~g~-l~IP~~~~~~~~~~~  198 (212)
T 4eby_A          155 SSIARSSGVSADILQRYNPGVN-FNSGNGI-VYVPGRDPNGAFPPF  198 (212)
T ss_dssp             HHHHHHHTSCHHHHHHHSTTCC-TTSCSSE-EEEECCCTTSCCCCC
T ss_pred             HHHHHHHCcCHHHHHHhcCCCc-cCCCCCE-EEecCCCCCCccCCc
Confidence            9999999999999999999876 4555554 999999998888765
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A* Back     alignment and structure
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15} Back     alignment and structure
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae} Back     alignment and structure
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae} Back     alignment and structure
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15} Back     alignment and structure
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1 Back     alignment and structure
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1 Back     alignment and structure
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A* Back     alignment and structure
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A* Back     alignment and structure
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis} Back     alignment and structure
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis} Back     alignment and structure
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 358
d1e0ga_48 d.7.1.1 (A:) Membrane-bound lytic murein transclyc 2e-05
d1e0ga_48 d.7.1.1 (A:) Membrane-bound lytic murein transclyc 3e-05
d1y7ma248 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-term 2e-04
d1y7ma248 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-term 0.002
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]} Length = 48 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Membrane-bound lytic murein transclycosylase D, MltD
species: Escherichia coli [TaxId: 562]

 Score = 39.2 bits (92), Expect = 2e-05
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 174 HVVEEGSSFALIAQKFGTDRDTLMKLNGIHDDSKLIAGEPLDVPLK 219
           + V +G S + IA++ G +   +M+ N     + L  G+ L + +K
Sbjct: 5   YRVRKGDSLSSIAKRHGVNIKDVMRWNSD--TANLQPGDKLTLFVK 48
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]} Length = 48 Back     information, alignment and structure
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 48 Back     information, alignment and structure
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 48 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query358
d1e0ga_48 Membrane-bound lytic murein transclycosylase D, Ml 99.45
d1y7ma248 Hypothetical protein YkuD, N-terminal domain {Baci 99.44
d1e0ga_48 Membrane-bound lytic murein transclycosylase D, Ml 99.2
d1y7ma248 Hypothetical protein YkuD, N-terminal domain {Baci 99.17
d2evra2148 Cell wall-associated hydrolase Spr C-terminal doma 89.32
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Membrane-bound lytic murein transclycosylase D, MltD
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=2.6e-14  Score=98.23  Aligned_cols=46  Identities=26%  Similarity=0.401  Sum_probs=42.8

Q ss_pred             eeeeeecCChHHHHHHHhCCCHHHHhhhhCCCCCCCcCCCCeEEECCC
Q 018290          172 YAHVVEEGSSFALIAQKFGTDRDTLMKLNGIHDDSKLIAGEPLDVPLK  219 (358)
Q Consensus       172 ~~Y~V~~GDTL~~IA~kygvt~~~L~~~N~l~~~~~l~~Gq~L~IP~~  219 (358)
                      .+|+|++||||++||++||+++++|++||++.+  .|+|||+|.||.+
T Consensus         3 v~y~V~~GDTl~~IA~~y~vs~~~i~~~N~l~~--~l~~Gq~L~i~vk   48 (48)
T d1e0ga_           3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTA--NLQPGDKLTLFVK   48 (48)
T ss_dssp             CEEEECTTCCHHHHHHHHTCCHHHHHHHCSCGG--GCCTTEEEECCCC
T ss_pred             EEEEECCCCCHHHHHHHHCCCHHHHHHHcCCcc--cCcCCCEEEEEeC
Confidence            579999999999999999999999999999853  6999999999974
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2evra2 d.3.1.16 (A:87-234) Cell wall-associated hydrolase Spr C-terminal domain {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure