Citrus Sinensis ID: 018293

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKKPQSVI
Secondary Structure (PSIPRED)
cEEcccccEEEEEEccccEEEEEEEEEEccccccccEEEEccccccccccccccccccccccccccEEEEEcccccEEEEEcccccccccEEEEEcccccEEEEEcccccccccccccccccccEEEEEEcccccEEEEEccccccEEEEEccccEEEcccccccccEEEEEEccccccEEEEccccccEEEEEccccccEEEcccccccEEEEEEccccccEEEEEEccccEEEEEccccccccccccccccEEEEEccccEEEEEEccccccEEEEEEccccEEEEEccccccEEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEccccHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEcccccEEEEEccccccEEEEEEEEEccccEEEEEEcccccEEccccEEEcEEEcEEEEcccccEEEEEccccEEEEEEccccccccccEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEccccccccEEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccccEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEcccccccccccEcc
Coil and Loop (DISEMBL)
MTINPNDAVIVCARNEDDVSHLEVYILEesdggdpnlyvhhhiiipafplcmawldcplkdrekgnfmavgsmepaieiwdldvidevqphvilggideekkkkkskkgkkssikykkgshtdsvlgLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVawnhhspqillsgsfdrsvvmkdaristhsGFKWAVAADVeslawdphaehsfvvsledgtikgfdirtaksdpdstsqqssftlhahdkavctisynplvpnllatgstdkMVKLWdlsnnqpsciasrnpkagaVFSVafsedspfvlaiggskgklEIWDTLsdagisnrfskyskpkkpqsvi
Flexible Loop (DISEMBL)
MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHvilggideekkkkkskkgkkssikykkgshtdsvlglAWNKEFRNILASasadkqvkIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSdagisnrfskyskpkkpqsvi
Low Complexity Region (SEG)
MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEkkkkkskkgkkssikykkgsHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKKPQSVI
Disordered region (IsUnstruct)
*******AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGI**************************SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI****************TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG******************
Disordered Region (DISOPRED)
MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKK***********KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK*S******SVI
Disordered Region (DISEMBL)
MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE*******************SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA*************TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS************
Disordered Region (DISPRO)
MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKKPQSVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
Q9P775	516	Uncharacterized WD repeat	yes	no	0.916	0.635	0.395	3e-70
Q99LL5	501	Periodic tryptophan prote	yes	no	0.921	0.658	0.363	2e-60
Q2HJ56	500	Periodic tryptophan prote	yes	no	0.921	0.66	0.372	3e-60
Q13610	501	Periodic tryptophan prote	yes	no	0.921	0.658	0.363	6e-60
P21304	576	Periodic tryptophan prote	yes	no	0.946	0.588	0.337	3e-50
Q00808	1356	Vegetative incompatibilit	no	no	0.561	0.148	0.327	1e-16
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.553	0.157	0.322	7e-15
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.491	0.115	0.282	9e-14
Q54WA3	316	Peroxisomal targeting sig	no	no	0.581	0.658	0.269	4e-13
Q4WEI5	436	Histone acetyltransferase	no	no	0.614	0.504	0.275	1e-12

>sp|Q9P775|YBEG_SCHPO Uncharacterized WD repeat-containing protein C17D11.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1711.16 PE=1 SV=1

 Score =  265 bits (678), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 212/349 (60%), Gaps = 21/349 (6%)

Query: 1   MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPL- 59
           M I P D++++ AR ED++SH+EVY+ E ++    NLYVHH  ++P FPLC+ WLD  + 
Sbjct: 139 MQILPTDSLLLAARTEDNLSHVEVYVYEPTE---ENLYVHHDFLLPTFPLCLEWLDYKVG 195

Query: 60  -KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKK 118
             D   GN++AVG+ +P IEIWDLD+ID V P  +LG         +  K KK S K   
Sbjct: 196 TSDNAPGNYVAVGTFDPEIEIWDLDIIDAVYPAAVLGA-----GASQVNKKKKKSKKIND 250

Query: 119 GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP 178
             HTD+VL L+ N+   N+L S SAD  +K+WD++   C  +  +H+DKV  + W   +P
Sbjct: 251 SYHTDAVLALSSNRNAHNLLVSGSADTTLKLWDLSTCNCVKSFTYHSDKVSCLDWYSKAP 310

Query: 179 QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 238
            +LLSGS+D++  + D R+   +   + V +DVE++AWD H+E++F +  ++G +   D 
Sbjct: 311 SVLLSGSYDKTAKIADLRLE-EAPSSFQVTSDVENVAWDQHSENNFFIGTDNGIVYYCDA 369

Query: 239 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 298
           R           +S + L AHD  +  +S NP VP+ +ATGSTD++VKLW+ S++ P  +
Sbjct: 370 RNLS--------KSVWQLQAHDGPISCLSVNPSVPSFVATGSTDRVVKLWNTSDSSPKMV 421

Query: 299 ASRNPKAGAVFSVAFSED--SPFVLAIGGSKGKLEIWDTLSDAGISNRF 345
            SR+   G VF+ +F+ D  + F LA  GSKG + +WDT ++ G+   F
Sbjct: 422 VSRDLDVGRVFTCSFTTDESTAFHLAASGSKGVVRVWDTATNPGVRKAF 470

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q99LL5|PWP1_MOUSE Periodic tryptophan protein 1 homolog OS=Mus musculus GN=Pwp1 PE=1 SV=1

 Score =  233 bits (594), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 127/349 (36%), Positives = 194/349 (55%), Gaps = 19/349 (5%)

Query: 3   INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKD 61
           I P D +IVC R E +  +LEV++  + +    + YVHH I++ A+PL + WL+  P  D
Sbjct: 144 IKPTDNLIVCGRAEQEQCNLEVHVYNQEE---ESFYVHHDILLSAYPLSVEWLNFDPSPD 200

Query: 62  REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH 121
              GN++AVG+M P IE+WDLD++D ++P      +     K   KK KK         H
Sbjct: 201 ASTGNYIAVGNMTPVIEVWDLDIVDSLEP------VFTLGSKLSKKKKKKGKKSSSAEGH 254

Query: 122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQIL 181
           TD+VL L+WNK  RN+LASASAD  V +WD++ GK    L  HTDKVQ + ++    Q L
Sbjct: 255 TDAVLDLSWNKTVRNVLASASADSTVVLWDLSVGKSVARLTAHTDKVQTLQFHPFEAQTL 314

Query: 182 LSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241
           +SGS+D+SV + D R  + +  +W  +  +E + W+  +   F+ S +DG +   D R+ 
Sbjct: 315 ISGSYDKSVALYDCRDPSQNHRQWRFSGQIERVTWNHFSPCHFLASTDDGFVYNLDARSD 374

Query: 242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 301
           K           FTL+AH+  +  +  +  +   L T S DK VK+WD+  ++PS I SR
Sbjct: 375 K---------PIFTLNAHNDEISGLDLSSQIKGCLVTASADKFVKIWDILGDRPSLIHSR 425

Query: 302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 350
           + K G +F  +   D PFV A GG K  L +WD  + + ++  F +  +
Sbjct: 426 DMKMGVLFCSSCCPDLPFVYAFGGQKEGLRVWDISTVSSVNEAFGRRER 474

May play an important role in cell growth and/or transcription.

Mus musculus (taxid: 10090)

>sp|Q2HJ56|PWP1_BOVIN Periodic tryptophan protein 1 homolog OS=Bos taurus GN=PWP1 PE=2 SV=1

 Score =  232 bits (591), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 130/349 (37%), Positives = 198/349 (56%), Gaps = 19/349 (5%)

Query: 3   INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKD 61
           I P+D +IVC R E D  +LEV++  + +    + YVHH I++ A+PL + WL+  P  D
Sbjct: 144 IKPSDNLIVCGRAEQDQCNLEVHVYNQEED---SFYVHHDILLSAYPLSVEWLNFDPSPD 200

Query: 62  REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH 121
              GN++AVG+M P IE+WDLD++D ++P  +     +  KKKK K  K SS       H
Sbjct: 201 DSTGNYIAVGNMTPVIEVWDLDIVDSLEP--VFTLGSKLSKKKKKKGKKNSSAD----GH 254

Query: 122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQIL 181
           TD+VL L+WNK  RN+LASASAD  V +WD++ GK   +L  HTDKVQ + ++    Q L
Sbjct: 255 TDAVLDLSWNKLVRNVLASASADNTVILWDMSLGKPAASLAVHTDKVQTLQFHPFEAQTL 314

Query: 182 LSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241
           +SGS+D+SV + D R    S   W  +  +E + W+  +   F+ S +DG +   D R  
Sbjct: 315 ISGSYDKSVALYDCRSPEESHRMWRFSGQIERVTWNHFSPCHFLASTDDGFVYNLDAR-- 372

Query: 242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 301
                  S +  FTL+AH+  +  +  +  +   L T S DK VK+WD+  ++PS + SR
Sbjct: 373 -------SDKPIFTLNAHNDEISGLDLSSQIKGCLVTASADKYVKIWDILGDRPSLVHSR 425

Query: 302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 350
           + K G +F  +   D PF+ A GG K  L +WD  + + ++  F +  +
Sbjct: 426 DMKMGVLFCSSCCPDLPFIYAFGGQKEGLRVWDISTVSSVNEAFGRRER 474

May play an important role in cell growth and/or transcription.

Bos taurus (taxid: 9913)

>sp|Q13610|PWP1_HUMAN Periodic tryptophan protein 1 homolog OS=Homo sapiens GN=PWP1 PE=1 SV=1

 Score =  231 bits (589), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 127/349 (36%), Positives = 194/349 (55%), Gaps = 19/349 (5%)

Query: 3   INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKD 61
           I P+D +IVC R E D  +LEV++  + +    + YVHH I++ A+PL + WL+  P  D
Sbjct: 145 IKPSDNLIVCGRAEQDQCNLEVHVYNQEED---SFYVHHDILLSAYPLSVEWLNFDPSPD 201

Query: 62  REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH 121
              GN++AVG+M P IE+WDLD++D ++P      +     K   KK KK         H
Sbjct: 202 DSTGNYIAVGNMTPVIEVWDLDIVDSLEP------VFTLGSKLSKKKKKKGKKSSSAEGH 255

Query: 122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQIL 181
           TD+VL L+WNK  RN+LASASAD  V +WD++ GK   +L  HTDKVQ + ++    Q L
Sbjct: 256 TDAVLDLSWNKLIRNVLASASADNTVILWDMSLGKPAASLAVHTDKVQTLQFHPFEAQTL 315

Query: 182 LSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241
           +SGS+D+SV + D R    S   W  +  +E + W+  +   F+ S +DG +   D R  
Sbjct: 316 ISGSYDKSVALYDCRSPDESHRMWRFSGQIERVTWNHFSPCHFLASTDDGFVYNLDAR-- 373

Query: 242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 301
                  S +  FTL+AH+  +  +  +  +   L T S DK VK+WD+  ++PS + SR
Sbjct: 374 -------SDKPIFTLNAHNDEISGLDLSSQIKGCLVTASADKYVKIWDILGDRPSLVHSR 426

Query: 302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 350
           + K G +F  +   D PF+ A GG K  L +WD  + + ++  F +  +
Sbjct: 427 DMKMGVLFCSSCCPDLPFIYAFGGQKEGLRVWDISTVSSVNEAFGRRER 475

May play an important role in cell growth and/or transcription.

Homo sapiens (taxid: 9606)

>sp|P21304|PWP1_YEAST Periodic tryptophan protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PWP1 PE=1 SV=1

 Score =  199 bits (506), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 204/385 (52%), Gaps = 46/385 (11%)

Query: 1   MTINPNDAVIVCARNEDDVSHLEVYI-------------LEESDGGDPN----------L 37
           + + P+D +++ AR EDDVS+L++Y+             +EE D  DP+          L
Sbjct: 138 LQVYPSDNLVLAARTEDDVSYLDIYVYDDGAGFHSSDIPVEEGDEADPDVARGLVRDPAL 197

Query: 38  YVHHHIIIPAFPLCMAWLDCPL--KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILG 95
           YVHH +++PAFPLC+ WLD  +     E  N+ A+G+ +P IEIW+LD +D+  P +ILG
Sbjct: 198 YVHHDLMLPAFPLCVEWLDYKVGSNSEEAANYAAIGTFDPQIEIWNLDCVDKAFPDMILG 257

Query: 96  G-IDEEK-KKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 153
             +D      K  KK KKS   +    HTD+VL +A NK FR++LAS SAD  VK+WD+ 
Sbjct: 258 EPLDNSMVSLKSKKKKKKSKTGHITTHHTDAVLSMAHNKYFRSVLASTSADHTVKLWDLN 317

Query: 154 AGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAA 209
           +G    +L   H    V +  W+  +  ILL+G +D  V + D RIS  S     W+  A
Sbjct: 318 SGNAARSLASIHSNKNVSSSEWHMLNGSILLTGGYDSRVALTDVRISDESQMSKYWSAMA 377

Query: 210 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN 269
             E       +E+  +   + G +  FDIR      ++ +++  +TL AHD  + T+  N
Sbjct: 378 GEEIETVTFASENIILCGTDSGNVYSFDIR------NNENRKPVWTLKAHDAGISTLCSN 431

Query: 270 PLVPNLLATGST-DKMVKLW-----DLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPF--V 320
             +P +++TG+  +K VKLW     D +N + PS + SR+   G V + +F+ D      
Sbjct: 432 KFIPGMMSTGAMGEKTVKLWKFPLDDATNTKGPSMVLSRDFDVGNVLTSSFAPDIEVAGT 491

Query: 321 LAIGGSKGKLEIWDTLSDAGISNRF 345
           + IGG    L++WD  ++  +   F
Sbjct: 492 MVIGGVNKVLKLWDVFTNRSVRKSF 516

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 115/217 (52%), Gaps = 16/217 (7%)

Query: 121  HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
            H  SVL +A++ + + + AS S DK +KIWD A+G    TLE H   V +VA++    ++
Sbjct: 840  HGSSVLSVAFSADGQRV-ASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERV 898

Query: 181  LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
              SGS D+++ + DA   T +         V+S+A+ P  +     S +D TIK +    
Sbjct: 899  -ASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGS-DDHTIKIW---- 952

Query: 241  AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
                 D+ S   + TL  H  +V +++++P     +A+GS DK +K+WD ++   +C  +
Sbjct: 953  -----DAASGTCTQTLEGHGSSVLSVAFSP-DGQRVASGSGDKTIKIWDTASG--TCTQT 1004

Query: 301  RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337
                 G+V+SVAFS D   V A G     ++IWDT S
Sbjct: 1005 LEGHGGSVWSVAFSPDGQRV-ASGSDDKTIKIWDTAS 1040

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 82.0 bits (201), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 108/214 (50%), Gaps = 16/214 (7%)

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           HTD V  +A++ +  N LAS++AD  +K+WDV+ GKC  TL+ HT  V++VA++    Q 
Sbjct: 767 HTDWVRCVAFSPD-GNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADG-QT 824

Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
           L SGS DR++ + +                V S+A+ P ++   V    D TIK +D +T
Sbjct: 825 LASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSK-ILVSGSGDRTIKLWDCQT 883

Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
                         TLH H   VC+++++P     LA  S D+ V+LW+    Q  C+ +
Sbjct: 884 HICIK---------TLHGHTNEVCSVAFSP-DGQTLACVSLDQSVRLWNCRTGQ--CLKA 931

Query: 301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
                     VAFS D   +LA G +   +++WD
Sbjct: 932 WYGNTDWALPVAFSPDRQ-ILASGSNDKTVKLWD 964

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 78.2 bits (191), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 29/205 (14%)

Query: 137  ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 196
            +LAS S D+ V++WD+++G+C  T + HT +V++V ++ +S  +L SGS D++V + D  
Sbjct: 920  MLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSL-MLASGSSDQTVRLWDIS 978

Query: 197  -------ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS 249
                      H+G+ ++VA +++                 D T++ +DI         +S
Sbjct: 979  SGECLYIFQGHTGWVYSVAFNLDG--------SMLATGSGDQTVRLWDI---------SS 1021

Query: 250  QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF 309
             Q  +    H   V ++ ++     +LA+GS D+ V+LWD+S+   +C+ +       V 
Sbjct: 1022 SQCFYIFQGHTSCVRSVVFSS-DGAMLASGSDDQTVRLWDISSG--NCLYTLQGHTSCVR 1078

Query: 310  SVAFSEDSPFVLAIGGSKGKLEIWD 334
            SV FS D   +LA GG    + +WD
Sbjct: 1079 SVVFSPDGA-MLASGGDDQIVRLWD 1102

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q54WA3|PEX7_DICDI Peroxisomal targeting signal 2 receptor OS=Dictyostelium discoideum GN=pex7 PE=3 SV=1

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 15/223 (6%)

Query: 116 YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA---GKCNLTLEHHTDKVQAVA 172
           +K     D +    W++E    +AS+S D  +KIWD  A   G+   + E HT +V +V 
Sbjct: 52  FKTFDTRDGLYDCTWSEENECHVASSSGDGSIKIWDTQAPSGGRPIKSFEEHTKEVYSVD 111

Query: 173 WNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 232
           WN  +    ++GS+D+S+ + + R+             + S  W P   H F     D T
Sbjct: 112 WNLVTKDTFITGSWDQSIKIWNPRMDRSLKTFREHRYCIYSAIWSPRNAHLFASVSGDRT 171

Query: 233 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 292
           +K +D R           +S  T+ AHD  + T  +N      + TGS DK +++WD+  
Sbjct: 172 LKIWDSR---------DNRSLNTIKAHDHEILTCDWNKYNDKEVVTGSVDKTIRIWDIRY 222

Query: 293 -NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
            ++P+ I        AV  +  S  S  +LA       + +WD
Sbjct: 223 PDRPTTIL--RGHTYAVRRIKCSPHSESMLASCSYDMSVIVWD 263

Binds to the N-terminal PTS2-type peroxisomal targeting signal and plays an essential role in peroxisomal protein import.

Dictyostelium discoideum (taxid: 44689)

>sp|Q4WEI5|HAT2_ASPFU Histone acetyltransferase type B subunit 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=hat2 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 121/261 (46%), Gaps = 41/261 (15%)

Query: 106 SKKGKKSSIKY---KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD------VAAGK 156
           S K     IK+   +K  H   V    +  +  NI+A+   D +V +WD      +  G+
Sbjct: 119 SSKKAPMEIKFNIVQKIDHKGEVNKARYQPQNPNIIATMCTDGRVMVWDRSKHPSLPTGQ 178

Query: 157 CNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSV-------------VMKDARISTHS 201
            N  +E   HT +   ++W+ H+   L +GS D++V             ++K +R  TH 
Sbjct: 179 VNPQMELIGHTKEGFGLSWSPHTAGQLATGSEDKTVRIWDLTTYSKGNKLLKPSRTYTHH 238

Query: 202 GFKWAVAADVESLAWDPHAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH 259
               ++  DV+      H  HS ++    +D T++  DIR ++     T++ ++ T   H
Sbjct: 239 S---SIVNDVQY-----HPLHSSLIGTVSDDITLQILDIRESE-----TTRAAASTEGQH 285

Query: 260 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF 319
             A+  I++NP    +LATGS DK + LWDL N + + + S      +V S+++      
Sbjct: 286 RDAINAIAFNPAAETVLATGSADKTIGLWDLRNLK-TKLHSLESHTDSVTSISWHPFEEA 344

Query: 320 VLAIGGSKGKLEIWDTLSDAG 340
           VLA      K+  WD LS AG
Sbjct: 345 VLASASYDRKIAFWD-LSRAG 364

Regulatory subunit of the histone acetylase B (HAT-B) complex. The complex acetylates 'Lys-12' of histone H4 which is required for telomeric silencing.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
255561012	493	WD-repeat protein, putative [Ricinus com	0.980	0.711	0.780	1e-159
225431285	493	PREDICTED: uncharacterized WD repeat-con	0.960	0.697	0.765	1e-158
297735093	492	unnamed protein product [Vitis vinifera]	0.958	0.697	0.759	1e-155
224103561	489	predicted protein [Populus trichocarpa]	0.952	0.697	0.771	1e-152
449517174	492	PREDICTED: uncharacterized WD repeat-con	0.972	0.707	0.732	1e-148
449462697	493	PREDICTED: uncharacterized WD repeat-con	0.972	0.705	0.732	1e-148
356551466	478	PREDICTED: uncharacterized WD repeat-con	0.966	0.723	0.718	1e-144
363807774	477	uncharacterized protein LOC100800393 [Gl	0.955	0.716	0.706	1e-140
357495421	485	Periodic tryptophan protein-like protein	0.983	0.725	0.697	1e-140
297804260	493	transducin family protein [Arabidopsis l	0.955	0.693	0.682	1e-134

>gi|255561012|ref|XP_002521518.1| WD-repeat protein, putative [Ricinus communis] gi|223539196|gb|EEF40789.1| WD-repeat protein, putative [Ricinus communis]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 277/355 (78%), Positives = 312/355 (87%), Gaps = 4/355 (1%)

Query: 1   MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLK 60
           MTINP DAVIVCARNED+ SHLEV+I+EESD GD N+YVHH II+ AFPLC AWLDCPLK
Sbjct: 140 MTINPKDAVIVCARNEDEFSHLEVWIIEESDDGDSNMYVHHDIILSAFPLCTAWLDCPLK 199

Query: 61  DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS 120
             EKGNF+AVGSMEP+IEIWDLD++DEVQP V+LGG+ E+KKKKK KK   +SIKYK+GS
Sbjct: 200 GAEKGNFIAVGSMEPSIEIWDLDIVDEVQPSVVLGGVAEKKKKKKGKK---TSIKYKEGS 256

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           HTDSVLGLAWNK+FRNILASASADKQVKIWDVA GKC++T+EHHTDKVQAVAWN+H PQ+
Sbjct: 257 HTDSVLGLAWNKQFRNILASASADKQVKIWDVATGKCDITMEHHTDKVQAVAWNYHEPQV 316

Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
           LLSGSFD SVV+KD RI TH GFKW V ADVESLAWDPH  HSFVVSLEDGT++GFDIRT
Sbjct: 317 LLSGSFDHSVVLKDGRIPTHPGFKWYVTADVESLAWDPHNTHSFVVSLEDGTVQGFDIRT 376

Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
           AK+D  S S + SFTLHAHDKAVCT+SYNP VPNLLATGSTDKMVKLWDLSNNQPSC+AS
Sbjct: 377 AKTDSTSDS-KPSFTLHAHDKAVCTVSYNPSVPNLLATGSTDKMVKLWDLSNNQPSCVAS 435

Query: 301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKKPQ 355
           ++PKAG +FS++FSEDSPF LAIGGSKGKL++WD  SDAG+S RF   SK   P 
Sbjct: 436 KDPKAGGIFSISFSEDSPFSLAIGGSKGKLQVWDISSDAGVSRRFMNSSKQNGPH 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431285|ref|XP_002275719.1| PREDICTED: uncharacterized WD repeat-containing protein C17D11.16-like [Vitis vinifera]

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 267/349 (76%), Positives = 307/349 (87%), Gaps = 5/349 (1%)

Query: 1   MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLK 60
           MTI   D+VIVCARN DD+SHLEV+I EES+ GD N+YVHH +IIPAFPLC AWLDCPLK
Sbjct: 141 MTIKAEDSVIVCARNADDLSHLEVWIFEESEDGDSNMYVHHDVIIPAFPLCTAWLDCPLK 200

Query: 61  DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS 120
             EKGNF+AVGSME +IEIWDLD+IDEVQP ++LGG+ E+KKKK  K    +S+KY+KGS
Sbjct: 201 GGEKGNFIAVGSMETSIEIWDLDIIDEVQPFLVLGGVAEKKKKKAKK----TSVKYRKGS 256

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           HTDSVLGLAWNKE+RNILASASADK VKIWDV +G+CN+T++HHTDKVQ VAWNHH PQ+
Sbjct: 257 HTDSVLGLAWNKEYRNILASASADKLVKIWDVTSGECNITMDHHTDKVQVVAWNHHEPQV 316

Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
           LLSGSFDRSVVMKD RI TH+GFKW+V ADVESLAWDPH  HSFVVSLEDGT++GFD+RT
Sbjct: 317 LLSGSFDRSVVMKDGRIPTHAGFKWSVTADVESLAWDPHTNHSFVVSLEDGTVQGFDVRT 376

Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
           AKSD  S S+  +FTLHAHD+AVCTISYNPL PN LATGSTDKMVKLWDLSNNQPSC+A+
Sbjct: 377 AKSDSASESKP-AFTLHAHDQAVCTISYNPLAPNFLATGSTDKMVKLWDLSNNQPSCVAT 435

Query: 301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 349
           RNPKAGAVFS++FSED PF+LAIGGS GKLE+WDTLS+A +S +F  YS
Sbjct: 436 RNPKAGAVFSISFSEDRPFLLAIGGSTGKLEVWDTLSEAPVSRKFGNYS 484

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735093|emb|CBI17455.3| unnamed protein product [Vitis vinifera]

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 265/349 (75%), Positives = 305/349 (87%), Gaps = 6/349 (1%)

Query: 1   MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLK 60
           MTI   D+VIVCARN DD+SHLEV+I EES+ GD N+YVHH +IIPAFPLC AWLDCPLK
Sbjct: 141 MTIKAEDSVIVCARNADDLSHLEVWIFEESEDGDSNMYVHHDVIIPAFPLCTAWLDCPLK 200

Query: 61  DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS 120
             EKGNF+AVGSME +IEIWDLD+IDEVQP ++LGG+ E+KKKK  K    +S+KY+KGS
Sbjct: 201 GGEKGNFIAVGSMETSIEIWDLDIIDEVQPFLVLGGVAEKKKKKAKK----TSVKYRKGS 256

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           HTDSVLGLAWNKE+RNILASASADK VKIWDV +G+CN+T++HHTDK   VAWNHH PQ+
Sbjct: 257 HTDSVLGLAWNKEYRNILASASADKLVKIWDVTSGECNITMDHHTDKA-IVAWNHHEPQV 315

Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
           LLSGSFDRSVVMKD RI TH+GFKW+V ADVESLAWDPH  HSFVVSLEDGT++GFD+RT
Sbjct: 316 LLSGSFDRSVVMKDGRIPTHAGFKWSVTADVESLAWDPHTNHSFVVSLEDGTVQGFDVRT 375

Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
           AKSD  S S+ + FTLHAHD+AVCTISYNPL PN LATGSTDKMVKLWDLSNNQPSC+A+
Sbjct: 376 AKSDSASESKPA-FTLHAHDQAVCTISYNPLAPNFLATGSTDKMVKLWDLSNNQPSCVAT 434

Query: 301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 349
           RNPKAGAVFS++FSED PF+LAIGGS GKLE+WDTLS+A +S +F  YS
Sbjct: 435 RNPKAGAVFSISFSEDRPFLLAIGGSTGKLEVWDTLSEAPVSRKFGNYS 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103561|ref|XP_002334041.1| predicted protein [Populus trichocarpa] gi|222839644|gb|EEE77967.1| predicted protein [Populus trichocarpa]

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 266/345 (77%), Positives = 303/345 (87%), Gaps = 4/345 (1%)

Query: 1   MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLK 60
           M I P DAVIVCA N+D+ S+LEV+IL+E+  GD N+YVHH + + AFPLC AWLDCPLK
Sbjct: 144 MAIKPKDAVIVCACNKDEFSNLEVWILDETSDGDSNIYVHHEVPLSAFPLCTAWLDCPLK 203

Query: 61  DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS 120
             EKGNF+AVGSMEPAIEIWDLD+IDEVQP V+LGGI+E+KKKKK KK    SIKYK+GS
Sbjct: 204 GGEKGNFIAVGSMEPAIEIWDLDIIDEVQPAVVLGGIEEKKKKKKGKK---VSIKYKEGS 260

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           HTDSVLGLAWNK FRNILASASADKQVKIWDV AGKC++T+EHHTDKVQAVAWNHH PQ+
Sbjct: 261 HTDSVLGLAWNKHFRNILASASADKQVKIWDVDAGKCDITMEHHTDKVQAVAWNHHEPQV 320

Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
           LLSGSFDRSVVMKD R+ +  GFKW+V ADVESLAWDPH +H FVVSLEDGT++GFDIR 
Sbjct: 321 LLSGSFDRSVVMKDGRLPSDPGFKWSVTADVESLAWDPHDKHLFVVSLEDGTVQGFDIRA 380

Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
           AKS   S+  + SFTLHAHDKAVCTISYNPL PNLLATGSTDKMVKLWDLSNNQPSC+ S
Sbjct: 381 AKSG-SSSDLKPSFTLHAHDKAVCTISYNPLAPNLLATGSTDKMVKLWDLSNNQPSCLVS 439

Query: 301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 345
           +NPKAGA+FSV+FSED+PF+LAIGGSKG LE+WDTLS+A ++ RF
Sbjct: 440 KNPKAGAIFSVSFSEDNPFLLAIGGSKGTLELWDTLSEAEVARRF 484

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517174|ref|XP_004165621.1| PREDICTED: uncharacterized WD repeat-containing protein C17D11.16-like [Cucumis sativus]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 257/351 (73%), Positives = 301/351 (85%), Gaps = 3/351 (0%)

Query: 2   TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKD 61
           TI P DAVI+CA +ED+VS L+V+I E    GDPN Y+H  IIIPAFPLC AWLDCPLK 
Sbjct: 144 TIKPTDAVIICACSEDNVSALQVWICEGYGAGDPNFYIHRDIIIPAFPLCTAWLDCPLKG 203

Query: 62  REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH 121
            E+GNF+AVGSMEP+IEIWDLDVIDEVQP  +LGGI E+KKKKK  K  K+S+ YK+ SH
Sbjct: 204 GERGNFIAVGSMEPSIEIWDLDVIDEVQPCAVLGGIVEKKKKKKKGK--KTSVTYKENSH 261

Query: 122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQIL 181
           TDSVLGLAWNKEFRNILASASADKQVKIWDV+ G+CN+T++HH DKVQAVAWNHHS Q+L
Sbjct: 262 TDSVLGLAWNKEFRNILASASADKQVKIWDVSTGQCNITMQHHIDKVQAVAWNHHSSQVL 321

Query: 182 LSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241
           LSGSFD SVV+KD R  +HSG+KW V ADVE+LAWDPH EH FVVSLEDGT+KGFDIR A
Sbjct: 322 LSGSFDHSVVLKDGRNPSHSGYKWQVTADVENLAWDPHTEHMFVVSLEDGTVKGFDIRNA 381

Query: 242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 301
            ++  S S ++SFTLHAH+KAVC++SY+P  PNLLATGSTDKMVKLWDLSNN+PSC+AS 
Sbjct: 382 TTESSSES-KASFTLHAHEKAVCSVSYSPSAPNLLATGSTDKMVKLWDLSNNEPSCLAST 440

Query: 302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPK 352
           NPKAGAVFSV+FSED PF+LAIGGSKGKLE+WDTL+DA +S ++  YS+ +
Sbjct: 441 NPKAGAVFSVSFSEDCPFLLAIGGSKGKLEVWDTLTDAAVSRKYGNYSQQR 491

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462697|ref|XP_004149077.1| PREDICTED: uncharacterized WD repeat-containing protein C17D11.16-like [Cucumis sativus]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 257/351 (73%), Positives = 301/351 (85%), Gaps = 3/351 (0%)

Query: 2   TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKD 61
           TI P DAVI+CA +ED+VS L+V+I E    GDPN Y+H  IIIPAFPLC AWLDCPLK 
Sbjct: 145 TIKPTDAVIICACSEDNVSALQVWICEGYGVGDPNFYIHRDIIIPAFPLCTAWLDCPLKG 204

Query: 62  REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH 121
            E+GNF+AVGSMEP+IEIWDLDVIDEVQP  +LGGI E+KKKKK  K  K+S+ YK+ SH
Sbjct: 205 GERGNFIAVGSMEPSIEIWDLDVIDEVQPCAVLGGIVEKKKKKKKGK--KTSVTYKENSH 262

Query: 122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQIL 181
           TDSVLGLAWNKEFRNILASASADKQVKIWDV+ G+CN+T++HH DKVQAVAWNHHS Q+L
Sbjct: 263 TDSVLGLAWNKEFRNILASASADKQVKIWDVSTGQCNITMQHHIDKVQAVAWNHHSSQVL 322

Query: 182 LSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241
           LSGSFD SVV+KD R  +HSG+KW V ADVE+LAWDPH EH FVVSLEDGT+KGFDIR A
Sbjct: 323 LSGSFDHSVVLKDGRNPSHSGYKWQVTADVENLAWDPHTEHMFVVSLEDGTVKGFDIRNA 382

Query: 242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 301
            ++  S S ++SFTLHAH+KAVC++SY+P  PNLLATGSTDKMVKLWDLSNN+PSC+AS 
Sbjct: 383 TTESSSES-KASFTLHAHEKAVCSVSYSPSAPNLLATGSTDKMVKLWDLSNNEPSCLAST 441

Query: 302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPK 352
           NPKAGAVFSV+FSED PF+LAIGGSKGKLE+WDTL+DA +S ++  YS+ +
Sbjct: 442 NPKAGAVFSVSFSEDCPFLLAIGGSKGKLEVWDTLTDAAVSRKYGNYSQQR 492

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551466|ref|XP_003544096.1| PREDICTED: uncharacterized WD repeat-containing protein C17D11.16-like [Glycine max]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 253/352 (71%), Positives = 305/352 (86%), Gaps = 6/352 (1%)

Query: 1   MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLK 60
           M INP D+V+V A  ED+VS+LEV+++E++D  + N+Y HH+IIIPAFPLC AWLDCPLK
Sbjct: 128 MIINPTDSVVVYACTEDEVSYLEVWVIEDADSSEMNMYPHHNIIIPAFPLCTAWLDCPLK 187

Query: 61  DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS 120
             E+GNF+AVGSMEP+IEIWDLDVIDEVQP V+LGG +E     + KKGKK SIKYK  S
Sbjct: 188 GGERGNFIAVGSMEPSIEIWDLDVIDEVQPCVVLGGFEE-----RKKKGKKKSIKYKDDS 242

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           HTDSVLGLAWNKE+RNILASASADKQVKIWDV AGKC++T+EHH+DKVQAVAWNHH+PQ+
Sbjct: 243 HTDSVLGLAWNKEYRNILASASADKQVKIWDVVAGKCDITMEHHSDKVQAVAWNHHAPQV 302

Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
           LLSGSFD +VV++D R+ +HSG+KW+V ADVESLAWDPH EHSFVVSLEDG +KGFDIRT
Sbjct: 303 LLSGSFDHTVVLRDGRMPSHSGYKWSVTADVESLAWDPHTEHSFVVSLEDGIVKGFDIRT 362

Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
           A S   S+   S+FTLHAHDKAV ++SYNP  PNLLATGS DK VKLWDLSNNQPSC+AS
Sbjct: 363 ANS-DSSSDPSSTFTLHAHDKAVTSVSYNPSAPNLLATGSMDKTVKLWDLSNNQPSCVAS 421

Query: 301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPK 352
           ++P+AGA+F ++FSED+PF+LAIGGSKGKL++WDTLSD+GIS R+  Y+K +
Sbjct: 422 KSPRAGAIFKISFSEDNPFLLAIGGSKGKLQVWDTLSDSGISRRYGNYNKNR 473

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807774|ref|NP_001242432.1| uncharacterized protein LOC100800393 [Glycine max] gi|255642317|gb|ACU21423.1| unknown [Glycine max]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/348 (70%), Positives = 293/348 (84%), Gaps = 6/348 (1%)

Query: 1   MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLK 60
           M INP D+VIV A  ED+VS+LEV ++E++D  + N+Y HH+IIIPAFPLC AWLDCPLK
Sbjct: 128 MIINPTDSVIVYACTEDEVSYLEVLVIEDADSSEMNVYPHHNIIIPAFPLCTAWLDCPLK 187

Query: 61  DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS 120
             E+ NF+AVGSMEP+IEIWDLDVIDEVQP V+LGG +E+KKK K K  K         S
Sbjct: 188 GGERRNFIAVGSMEPSIEIWDLDVIDEVQPCVVLGGFEEKKKKGKKKPIKYK-----DDS 242

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           HTDSVLGLAWNKE+RNILASA ADK+VKIWDV AGKC++T+EHH+DKVQAVAWNHH+PQ+
Sbjct: 243 HTDSVLGLAWNKEYRNILASAGADKRVKIWDVVAGKCDITMEHHSDKVQAVAWNHHAPQV 302

Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
           LLSGSFD +VV+KD R+ +HSG+KW+V ADVESLAWD H EHSFVVSLEDG +KGFDIRT
Sbjct: 303 LLSGSFDHTVVLKDGRMPSHSGYKWSVTADVESLAWDLHTEHSFVVSLEDGIVKGFDIRT 362

Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
           A S   S+   S+FTLHAHDKAV ++SYNP  PNLLATGS DK VKLWDLSNNQPSC+AS
Sbjct: 363 ANS-DSSSDLSSTFTLHAHDKAVTSVSYNPSAPNLLATGSMDKTVKLWDLSNNQPSCVAS 421

Query: 301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 348
           ++P+AG +F ++FSED+PF+LAIGGSKGKL++WDTLSDAGIS R+  Y
Sbjct: 422 KSPRAGVIFKISFSEDNPFLLAIGGSKGKLQVWDTLSDAGISRRYGNY 469

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495421|ref|XP_003617999.1| Periodic tryptophan protein-like protein [Medicago truncatula] gi|355519334|gb|AET00958.1| Periodic tryptophan protein-like protein [Medicago truncatula]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/357 (69%), Positives = 300/357 (84%), Gaps = 5/357 (1%)

Query: 1   MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLK 60
           M INP D+V+VCAR EDDV+ LEV+ILE+++  D NLY+HH IIIP FPLC AWLDCPLK
Sbjct: 133 MIINPTDSVVVCARTEDDVNFLEVWILEDANTRDMNLYIHHDIIIPEFPLCTAWLDCPLK 192

Query: 61  DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS 120
             EKGNF+AVGSM P+IEIWDLDVIDEV+P V+LG    ++K+KK K GKK S KYK+ S
Sbjct: 193 GGEKGNFLAVGSMGPSIEIWDLDVIDEVEPCVVLG---GKEKRKKGKNGKKKSAKYKEDS 249

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           HTDSVLGLAWNKE+ N LASASADK+VKIWD+ AGKC +T++HH+DKVQAVAWNH + QI
Sbjct: 250 HTDSVLGLAWNKEYSNTLASASADKRVKIWDIVAGKCTITMDHHSDKVQAVAWNHRAQQI 309

Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
           LLSGSFD +V +KD R  +HSG+ W+V+ADVESLAWDPH EHSF VSLEDGTI+ FD+RT
Sbjct: 310 LLSGSFDHTVALKDVRTPSHSGYTWSVSADVESLAWDPHTEHSFAVSLEDGTIQCFDVRT 369

Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
           A S+  S  Q ++FTLHAHDK+V ++SYN   PNLLATGS DK VKLWDLSNNQPS +AS
Sbjct: 370 AMSNATSV-QNATFTLHAHDKSVTSVSYNTAAPNLLATGSMDKTVKLWDLSNNQPSSVAS 428

Query: 301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKKPQSV 357
           + PKAGAVFS++FSED+PF+LAIGGSKGKL++WDTLSD GIS R+ K+++  +PQSV
Sbjct: 429 KEPKAGAVFSISFSEDNPFLLAIGGSKGKLQLWDTLSDEGISRRYGKFNR-NQPQSV 484

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804260|ref|XP_002870014.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297315850|gb|EFH46273.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/350 (68%), Positives = 285/350 (81%), Gaps = 8/350 (2%)

Query: 2   TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKD 61
           T+ P D+VI+CARNEDDVSHLEVY+ EES G  PN+YVHHHIIIP FPLC AW+DCPLK 
Sbjct: 141 TVKPTDSVIICARNEDDVSHLEVYVYEESSGS-PNMYVHHHIIIPEFPLCTAWIDCPLKG 199

Query: 62  REKGNFMAVGSME-PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSI---KYK 117
            EKGNF+A+GS E P IEIWDLDV DEV P + LGG +E    KK K  K        YK
Sbjct: 200 GEKGNFVAIGSKESPTIEIWDLDVRDEVLPCIQLGGTEEMIVSKKKKNKKDKICLWQTYK 259

Query: 118 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS 177
           +GSHTDSVLGLAWNKEFRNILASASADK+VK+WDVA G C +T+EHHT +VQAVAWNH++
Sbjct: 260 EGSHTDSVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYA 319

Query: 178 PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 237
           P++LLSGSFD++VV+KD R  +HSGFKW+V +DVESLAWDPH+EHSFVVSLEDGT+KGFD
Sbjct: 320 PEVLLSGSFDQTVVLKDGRQPSHSGFKWSVMSDVESLAWDPHSEHSFVVSLEDGTVKGFD 379

Query: 238 IRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295
           IR A+S  DS   + SFT+ AH  DK V +ISYN   PNLLATGS DK VKLWDLSNN+P
Sbjct: 380 IRAAQSGSDS-DLKPSFTIQAHDQDKGVSSISYNISSPNLLATGSMDKTVKLWDLSNNEP 438

Query: 296 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 345
           SC+A+  PKAGAVFS++F+ D+PF+LAIGGSKG+L +WDTL DA ++ ++
Sbjct: 439 SCLATHKPKAGAVFSISFAVDNPFLLAIGGSKGELHVWDTLLDANVARKY 488

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:2117169	461	AT4G18900 "AT4G18900" [Arabido	0.932	0.724	0.590	5.3e-111
TAIR|locus:2122133	433	AT4G35370 "AT4G35370" [Arabido	0.561	0.464	0.639	7.8e-95
UNIPROTKB|G4MTU3	551	MGG_04802 "Periodic tryptophan	0.952	0.618	0.439	8.1e-76
ASPGD|ASPL0000062261	535	AN0310 [Emericella nidulans (t	0.946	0.633	0.426	1.4e-73
POMBASE|SPBC1711.16	516	SPBC1711.16 "WD repeat protein	0.913	0.633	0.385	3.6e-66
DICTYBASE|DDB_G0275073	569	pwp1 "periodic tryptophan prot	0.963	0.606	0.386	2.9e-64
ZFIN|ZDB-GENE-040426-1049	490	pwp1 "PWP1 homolog (S. cerevis	0.910	0.665	0.386	1.3e-59
MGI|MGI:1914735	501	Pwp1 "PWP1 homolog (S. cerevis	0.913	0.652	0.361	5.7e-59
UNIPROTKB|Q13610	501	PWP1 "Periodic tryptophan prot	0.913	0.652	0.361	9.3e-59
UNIPROTKB|Q2HJ56	500	PWP1 "Periodic tryptophan prot	0.913	0.654	0.361	1.5e-58

TAIR|locus:2117169 AT4G18900 "AT4G18900" [Arabidopsis thaliana (taxid:3702)]

 Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
 Identities = 208/352 (59%), Positives = 264/352 (75%)

Query:     3 INPNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKD 61
             I P D VIVCA  +D + + L+VY+ E++  G PN+Y HH+ IIPA PLC AWLDCPLK 
Sbjct:   125 ILPTDLVIVCAMTDDKEANRLDVYVSEDTSHGSPNMYNHHYRIIPAIPLCTAWLDCPLKG 184

Query:    62 REKGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXX 120
              E+GNF+AVGS   P IEIWDLD   ++ P V LGG ++E                    
Sbjct:   185 GERGNFLAVGSDGTPTIEIWDLDAWFDMLPCVQLGGQNKEGNYKQGS------------- 231

Query:   121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
             HT SVLGLAWNKEFRNILASASADK+VK+WDVA G C +T+EHHT +VQAVAWNH++P++
Sbjct:   232 HTRSVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYAPEV 291

Query:   181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
             LLSGSFD++VV+KD R  +HSGFKW+V +DVESLAWDPH+EHSFVVSLEDGT+KGFD+R 
Sbjct:   292 LLSGSFDQTVVLKDGRQPSHSGFKWSVMSDVESLAWDPHSEHSFVVSLEDGTVKGFDVRQ 351

Query:   241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
             A     ++    SFT++ HD+A  ++SYN   PNLLATGS D+ VKLWDLSNN+PSCIA+
Sbjct:   352 ASIS--ASESNPSFTINGHDEAATSVSYNISAPNLLATGSKDRTVKLWDLSNNEPSCIAT 409

Query:   301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF-SKYSKP 351
              NP AG +F +AFS D+PF+LA+GG  G+L++WDTLSD  +S+R+ S+  +P
Sbjct:   410 HNPNAGGLFFIAFSPDNPFLLAMGGVMGELKLWDTLSDTNVSSRYGSREVRP 461

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122133 AT4G35370 "AT4G35370" [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 7.8e-95, Sum P(2) = 7.8e-95
 Identities = 133/208 (63%), Positives = 161/208 (77%)

Query:   121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
             HT  V+ LAWNKEFRNI+AS S DK+VK+WDVA GKC +T+EHH  KV AVAWN+++P++
Sbjct:   215 HTGPVIDLAWNKEFRNIVASGSEDKKVKVWDVATGKCKVTMEHHEKKVHAVAWNNYTPEV 274

Query:   181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
             LLSGS DR+VV+KD R  ++SG KW+  A VE LAWDPH+EHSFVVSL+DGT+KGFD R 
Sbjct:   275 LLSGSRDRTVVLKDGRDPSNSGLKWSTEAKVEKLAWDPHSEHSFVVSLKDGTVKGFDTRA 334

Query:   241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
             +   P       SF +HAHD  V +ISYN   PNLLATGS D+ VKLWDLSNNQPS IA+
Sbjct:   335 SDLSP-------SFIIHAHDSEVSSISYNIHAPNLLATGSADESVKLWDLSNNQPSWIAT 387

Query:   301 RNPKAGAVFSVAFSEDSPFVLAIGGSKG 328
               P AG VFSV+FS D PF+LA+GGS+G
Sbjct:   388 NKPNAGEVFSVSFSADCPFLLAVGGSEG 415

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4MTU3 MGG_04802 "Periodic tryptophan protein 1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 155/353 (43%), Positives = 222/353 (62%)

Query:     1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPL- 59
             + I   D +++ A+ ED+++HLEVY+ E  D  D NLYVHH I++PA PLC+ WLD  + 
Sbjct:   152 LQILATDNLLLAAKVEDELAHLEVYVYE--DAAD-NLYVHHDIMLPAIPLCVEWLDIAVE 208

Query:    60 -KDREK---GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXX 115
              KD  K    NF+A+G+M+P IEIWDLD ID + P+ ILG                    
Sbjct:   209 KKDTPKDAAANFVAIGTMDPDIEIWDLDTIDCMYPNAILGQGSNADEASGKKKKKKKSKK 268

Query:   116 XXXXXHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH 175
                  H D+VL LA N++ RN+LASASADK VK+WD+   KC  + ++HTDKV +VAW+ 
Sbjct:   269 VNDEFHVDAVLALAANRKHRNLLASASADKTVKLWDLNTTKCAKSYKYHTDKVCSVAWHP 328

Query:   176 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 235
                 +LLSGS+DR++V  D R       +W V +DVE++ WDPH  + F VS E+G I  
Sbjct:   329 VESTVLLSGSYDRTIVAADMRAPDAKVPRWGVESDVENVRWDPHDPNFFFVSTENGLIHY 388

Query:   236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295
             +D+R A SDP +TS+ +++TL AHD+++ +   NP++P  + TGSTDK VKLW++  + P
Sbjct:   389 YDVRNAPSDP-ATSK-ATWTLQAHDESISSFDINPVIPGFMVTGSTDKTVKLWNIQESGP 446

Query:   296 SCIASRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLSDAGISNRFS 346
             S I SRN   G VFS +F+ D+   F L++ GSKG + +WDT ++  I   F+
Sbjct:   447 SMIVSRNLDVGKVFSTSFAPDAEVGFRLSVAGSKGTVTVWDTSTNPAIRRAFA 499

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

ASPGD|ASPL0000062261 AN0310 [Emericella nidulans (taxid:162425)]

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 150/352 (42%), Positives = 215/352 (61%)

Query:     1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPL- 59
             + I P D +++  + ED+V+HLEVY+ E  D  D NLYVHH I++PA PLC+ WLD P+ 
Sbjct:   142 LQILPTDNLLLAGKVEDEVAHLEVYVYE--DEAD-NLYVHHDIMLPAIPLCLEWLDFPVG 198

Query:    60 KDREKG----NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXX 115
             K  E G    NF+AVG+MEP IE+WDLDV+D + P+ ILG    +               
Sbjct:   199 KSGENGGATGNFVAVGTMEPDIEVWDLDVVDSMYPNAILGQGGADADTDAKKPRKKKKVK 258

Query:   116 XXXXXHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH 175
                  H DSVL LA N++ RN+LAS SAD+ VK+WD+   K   +  HHTDKV ++ W+ 
Sbjct:   259 ANDEFHVDSVLALAANRQHRNLLASGSADRTVKLWDLNTAKSAKSYTHHTDKVCSLDWHP 318

Query:   176 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 235
                 +LL+GS+DR++V  D R +  S  +W V ADVE++ WD H  + F  + + G +  
Sbjct:   319 KESTVLLTGSYDRTIVAADMR-APDSKARWGVDADVENVRWDIHDPNYFYATTDAGMVYR 377

Query:   236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295
             +DIR   + P  +  +  ++L AHD +V +   NP +P  LATGSTDK VKLW++ N++P
Sbjct:   378 YDIRNVPATPKDS--KPVWSLQAHDSSVSSFDINPAIPGFLATGSTDKQVKLWNVENDKP 435

Query:   296 SCIASRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLSDAGISNRF 345
             S + SR  + G VFS  F+ D+   F LA+ GSKG ++IWDT ++A +   F
Sbjct:   436 SMVVSRKLEVGKVFSTTFAPDAEVGFRLAVAGSKGTVQIWDTSTNAAVRRAF 487

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

POMBASE|SPBC1711.16 SPBC1711.16 "WD repeat protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
 Identities = 135/350 (38%), Positives = 207/350 (59%)

Query:     1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPL- 59
             M I P D++++ AR ED++SH+EVY+ E ++    NLYVHH  ++P FPLC+ WLD  + 
Sbjct:   139 MQILPTDSLLLAARTEDNLSHVEVYVYEPTE---ENLYVHHDFLLPTFPLCLEWLDYKVG 195

Query:    60 -KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXX 118
               D   GN++AVG+ +P IEIWDLD+ID V P  +LG                       
Sbjct:   196 TSDNAPGNYVAVGTFDPEIEIWDLDIIDAVYPAAVLGA-----GASQVNKKKKKSKKIND 250

Query:   119 XXHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP 178
               HTD+VL L+ N+   N+L S SAD  +K+WD++   C  +  +H+DKV  + W   +P
Sbjct:   251 SYHTDAVLALSSNRNAHNLLVSGSADTTLKLWDLSTCNCVKSFTYHSDKVSCLDWYSKAP 310

Query:   179 QILLSGSFDRSVVMKDARIS-THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 237
              +LLSGS+D++  + D R+    S F+  V +DVE++AWD H+E++F +  ++G +   D
Sbjct:   311 SVLLSGSYDKTAKIADLRLEEAPSSFQ--VTSDVENVAWDQHSENNFFIGTDNGIVYYCD 368

Query:   238 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 297
              R           +S + L AHD  +  +S NP VP+ +ATGSTD++VKLW+ S++ P  
Sbjct:   369 ARNLS--------KSVWQLQAHDGPISCLSVNPSVPSFVATGSTDRVVKLWNTSDSSPKM 420

Query:   298 IASRNPKAGAVFSVAFSED--SPFVLAIGGSKGKLEIWDTLSDAGISNRF 345
             + SR+   G VF+ +F+ D  + F LA  GSKG + +WDT ++ G+   F
Sbjct:   421 VVSRDLDVGRVFTCSFTTDESTAFHLAASGSKGVVRVWDTATNPGVRKAF 470

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0043234 "protein complex" evidence=NAS

DICTYBASE|DDB_G0275073 pwp1 "periodic tryptophan protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
 Identities = 141/365 (38%), Positives = 205/365 (56%)

Query:     3 INPNDAVIVCA--RNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PL 59
             I P D+++V A    EDD SHL++ + EE      NLYVHH II+ ++PL +AW+D  P+
Sbjct:   140 IRPTDSILVSAIVTGEDDYSHLDIMVYEEECD---NLYVHHDIILSSYPLALAWMDQNPI 196

Query:    60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXX----XXXXXXXXXXX 115
               +EKG+FMAVG+ EP+IEIWDLDV+D + P VILGG +E+                   
Sbjct:   197 NPQEKGSFMAVGTFEPSIEIWDLDVVDNLIPTVILGGKEEDSADPMKKPSAKKRGGKHNK 256

Query:   116 XXXXXHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH 175
                  H D V+ L+WN   RN+LAS S+D  VK+WD+   +C  T  HH DKV  + WN 
Sbjct:   257 FKEGSHRDGVMSLSWNSHQRNVLASGSSDNTVKVWDITTQQCLNTFTHHKDKVSCLHWNS 316

Query:   176 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 235
             H    LL GS D+ V + D R +  S +KW+V  +VESL+W+PH    F+V  +DG +  
Sbjct:   317 HEKTALLIGSHDKHVSILDVR-APDSAYKWSVKGEVESLSWNPHNPKEFIVGTDDGRLLC 375

Query:   236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL--SNN 293
             +D     +     S Q+S        +V   SY P      ATGS+D  VKLW+L  S+N
Sbjct:   376 YDATLGTAAAPVWSVQAS-----QKGSVSCFSYCPGQVGFFATGSSDHTVKLWNLETSSN 430

Query:   294 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKK 353
             +P+ I S+N     +F+++F E+SPF+LA+G    +  + DT     + N F   ++P+ 
Sbjct:   431 KPTLIESKN-LGQEIFTLSFFENSPFLLAVGSETQRPNVIDTKRFISVQNSFG-IARPEN 488

Query:   354 PQSVI 358
              +  +
Sbjct:   489 SKEPV 493

GO:0003674 "molecular_function" evidence=ND

GO:0006364 "rRNA processing" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

ZFIN|ZDB-GENE-040426-1049 pwp1 "PWP1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 133/344 (38%), Positives = 193/344 (56%)

Query:     3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKD 61
             I P D +I+  R E +  +LE+++    +    +LYVHH I++PA+PLC+ WL+  P  +
Sbjct:   142 IKPTDNLILAGRAEKECCNLEIHVYNSEED---SLYVHHDILLPAYPLCVEWLNFDPNPE 198

Query:    62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXH 121
              ++GN+ AVG+M P I++WDLDV+D ++P   LG   E+                    H
Sbjct:   199 EQQGNYAAVGNMTPVIDVWDLDVVDCLEPAFSLGSKKEKKKKKKAKKAAEPIEG-----H 253

Query:   122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQIL 181
             TD+VL L+WN+  RN+LASASAD+ V +WD+  GK   TL  HTDKVQ + ++    Q L
Sbjct:   254 TDAVLDLSWNRLVRNVLASASADETVILWDLEKGKPAATLAKHTDKVQTLKFHPFEAQTL 313

Query:   182 LSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241
             +SGSFD+SV++ D R    S   W  +  VE + WD  +  +F+ S EDG I   D   A
Sbjct:   314 ISGSFDKSVILYDCRSPDDSHRIWRFSGQVERVTWDHFSPCNFLASTEDGFIYCLD---A 370

Query:   242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 301
             +SD      +  FTL AHD  V  +  +  +   L T S DK VK+WD+  N+P+ I SR
Sbjct:   371 RSD------KPVFTLRAHDGEVSGMDLSSQIRGCLVTCSADKHVKIWDILGNKPNLIHSR 424

Query:   302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 345
             + K G +F  +   D PFV A GG +  L +WD    A ++  F
Sbjct:   425 DMKMGVLFCGSCCPDLPFVYAFGGQREGLRVWDISDVAAVAEVF 468

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1914735 Pwp1 "PWP1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 125/346 (36%), Positives = 191/346 (55%)

Query:     3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKD 61
             I P D +IVC R E +  +LEV++  + +    + YVHH I++ A+PL + WL+  P  D
Sbjct:   144 IKPTDNLIVCGRAEQEQCNLEVHVYNQEE---ESFYVHHDILLSAYPLSVEWLNFDPSPD 200

Query:    62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXH 121
                GN++AVG+M P IE+WDLD++D ++P   LG                         H
Sbjct:   201 ASTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTLGS------KLSKKKKKKGKKSSSAEGH 254

Query:   122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQIL 181
             TD+VL L+WNK  RN+LASASAD  V +WD++ GK    L  HTDKVQ + ++    Q L
Sbjct:   255 TDAVLDLSWNKTVRNVLASASADSTVVLWDLSVGKSVARLTAHTDKVQTLQFHPFEAQTL 314

Query:   182 LSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241
             +SGS+D+SV + D R  + +  +W  +  +E + W+  +   F+ S +DG +   D   A
Sbjct:   315 ISGSYDKSVALYDCRDPSQNHRQWRFSGQIERVTWNHFSPCHFLASTDDGFVYNLD---A 371

Query:   242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 301
             +SD      +  FTL+AH+  +  +  +  +   L T S DK VK+WD+  ++PS I SR
Sbjct:   372 RSD------KPIFTLNAHNDEISGLDLSSQIKGCLVTASADKFVKIWDILGDRPSLIHSR 425

Query:   302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 347
             + K G +F  +   D PFV A GG K  L +WD  + + ++  F +
Sbjct:   426 DMKMGVLFCSSCCPDLPFVYAFGGQKEGLRVWDISTVSSVNEAFGR 471

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q13610 PWP1 "Periodic tryptophan protein 1 homolog" [Homo sapiens (taxid:9606)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 125/346 (36%), Positives = 191/346 (55%)

Query:     3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKD 61
             I P+D +IVC R E D  +LEV++  + +    + YVHH I++ A+PL + WL+  P  D
Sbjct:   145 IKPSDNLIVCGRAEQDQCNLEVHVYNQEED---SFYVHHDILLSAYPLSVEWLNFDPSPD 201

Query:    62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXH 121
                GN++AVG+M P IE+WDLD++D ++P   LG                         H
Sbjct:   202 DSTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTLGS------KLSKKKKKKGKKSSSAEGH 255

Query:   122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQIL 181
             TD+VL L+WNK  RN+LASASAD  V +WD++ GK   +L  HTDKVQ + ++    Q L
Sbjct:   256 TDAVLDLSWNKLIRNVLASASADNTVILWDMSLGKPAASLAVHTDKVQTLQFHPFEAQTL 315

Query:   182 LSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241
             +SGS+D+SV + D R    S   W  +  +E + W+  +   F+ S +DG +   D   A
Sbjct:   316 ISGSYDKSVALYDCRSPDESHRMWRFSGQIERVTWNHFSPCHFLASTDDGFVYNLD---A 372

Query:   242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 301
             +SD      +  FTL+AH+  +  +  +  +   L T S DK VK+WD+  ++PS + SR
Sbjct:   373 RSD------KPIFTLNAHNDEISGLDLSSQIKGCLVTASADKYVKIWDILGDRPSLVHSR 426

Query:   302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 347
             + K G +F  +   D PF+ A GG K  L +WD  + + ++  F +
Sbjct:   427 DMKMGVLFCSSCCPDLPFIYAFGGQKEGLRVWDISTVSSVNEAFGR 472

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q2HJ56 PWP1 "Periodic tryptophan protein 1 homolog" [Bos taurus (taxid:9913)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 125/346 (36%), Positives = 191/346 (55%)

Query:     3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKD 61
             I P+D +IVC R E D  +LEV++  + +    + YVHH I++ A+PL + WL+  P  D
Sbjct:   144 IKPSDNLIVCGRAEQDQCNLEVHVYNQEED---SFYVHHDILLSAYPLSVEWLNFDPSPD 200

Query:    62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXH 121
                GN++AVG+M P IE+WDLD++D ++P   LG                         H
Sbjct:   201 DSTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTLGS------KLSKKKKKKGKKNSSADGH 254

Query:   122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQIL 181
             TD+VL L+WNK  RN+LASASAD  V +WD++ GK   +L  HTDKVQ + ++    Q L
Sbjct:   255 TDAVLDLSWNKLVRNVLASASADNTVILWDMSLGKPAASLAVHTDKVQTLQFHPFEAQTL 314

Query:   182 LSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 241
             +SGS+D+SV + D R    S   W  +  +E + W+  +   F+ S +DG +   D   A
Sbjct:   315 ISGSYDKSVALYDCRSPEESHRMWRFSGQIERVTWNHFSPCHFLASTDDGFVYNLD---A 371

Query:   242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 301
             +SD      +  FTL+AH+  +  +  +  +   L T S DK VK+WD+  ++PS + SR
Sbjct:   372 RSD------KPIFTLNAHNDEISGLDLSSQIKGCLVTASADKYVKIWDILGDRPSLVHSR 425

Query:   302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 347
             + K G +F  +   D PF+ A GG K  L +WD  + + ++  F +
Sbjct:   426 DMKMGVLFCSSCCPDLPFIYAFGGQKEGLRVWDISTVSSVNEAFGR 471

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-31
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-29
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-14
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	6e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-09
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	9e-09
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002
smart00320	40	smart00320, WD40, WD40 repeats	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  120 bits (303), Expect = 1e-31
 Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 24/224 (10%)

Query: 120 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQ 179
            HT  V  +A++ +   +LA+ S D  +K+WD+  G+   TL+ HT  V+ VA +     
Sbjct: 7   GHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY 65

Query: 180 ILLSGSFDRSV----VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 235
            L SGS D+++    +     + T +G      + V S+A+ P        S  D TIK 
Sbjct: 66  -LASGSSDKTIRLWDLETGECVRTLTGHT----SYVSSVAFSPD-GRILSSSSRDKTIKV 119

Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295
           +D+ T K            TL  H   V +++++P     +A+ S D  +KLWDL     
Sbjct: 120 WDVETGK---------CLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTG-- 167

Query: 296 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 339
            C+A+     G V SVAFS D    L    S G +++WD  +  
Sbjct: 168 KCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK 210

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  112 bits (282), Expect = 9e-29
 Identities = 80/274 (29%), Positives = 127/274 (46%), Gaps = 51/274 (18%)

Query: 65  GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 124
           G ++A GS +  I +WDL+         + G                         HT  
Sbjct: 63  GTYLASGSSDKTIRLWDLE--TGECVRTLTG-------------------------HTSY 95

Query: 125 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 184
           V  +A++ +   IL+S+S DK +K+WDV  GKC  TL  HTD V +VA+       + S 
Sbjct: 96  VSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF-SPDGTFVASS 153

Query: 185 SFDRSVVMKDAR----ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
           S D ++ + D R    ++T +G       +V S+A+ P      + S  DGTIK +D+ T
Sbjct: 154 SQDGTIKLWDLRTGKCVATLTGHT----GEVNSVAFSP-DGEKLLSSSSDGTIKLWDLST 208

Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
                     +   TL  H+  V +++++P    LLA+GS D  +++WDL   +     S
Sbjct: 209 ---------GKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLS 258

Query: 301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
            +    +V S+A+S D    LA G + G + IWD
Sbjct: 259 GHT--NSVTSLAWSPDGKR-LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  111 bits (279), Expect = 2e-28
 Identities = 85/309 (27%), Positives = 133/309 (43%), Gaps = 71/309 (22%)

Query: 37  LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 96
           L  H   +      C+A+          G  +A GS +  I++WDL              
Sbjct: 5   LKGHTGGV-----TCVAFSPD-------GKLLATGSGDGTIKVWDL-------------- 38

Query: 97  IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 156
             E  +  ++ KG           HT  V  +A +      LAS S+DK +++WD+  G+
Sbjct: 39  --ETGELLRTLKG-----------HTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGE 84

Query: 157 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR-------ISTHSGFKWAVAA 209
           C  TL  HT  V +VA+     +IL S S D+++ + D         +  H+        
Sbjct: 85  CVRTLTGHTSYVSSVAF-SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD------- 136

Query: 210 DVESLAWDPHAEHSFVV-SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 268
            V S+A+ P    +FV  S +DGTIK +D+RT K            TL  H   V ++++
Sbjct: 137 WVNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKC---------VATLTGHTGEVNSVAF 185

Query: 269 NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 328
           +P     L + S+D  +KLWDLS     C+ +       V SVAFS D   + + G   G
Sbjct: 186 SP-DGEKLLSSSSDGTIKLWDLST--GKCLGTLRGHENGVNSVAFSPDGYLLAS-GSEDG 241

Query: 329 KLEIWDTLS 337
            + +WD  +
Sbjct: 242 TIRVWDLRT 250

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  108 bits (269), Expect = 4e-26
 Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 10/261 (3%)

Query: 78  EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 137
            +  L +       ++L     +   K         +      H++SV  LA++ + + +
Sbjct: 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL 170

Query: 138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 197
            + +S D  +K+WD+  GK   TL  HTD V ++A++     ++ SGS D ++ + D   
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230

Query: 198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH 257
                   +  +D    ++ P           DGTI+ +D+R        +S     TL 
Sbjct: 231 GKLLRSTLSGHSDSVVSSFSPD-GSLLASGSSDGTIRLWDLR--------SSSSLLRTLS 281

Query: 258 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 317
            H  +V +++++P    LLA+GS+D  V+LWDL   +     +     G V S++FS D 
Sbjct: 282 GHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDG 340

Query: 318 PFVLAIGGSKGKLEIWDTLSD 338
             +++ G   G + +WD  + 
Sbjct: 341 SLLVSGGSDDGTIRLWDLRTG 361

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 83.2 bits (204), Expect = 1e-17
 Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 16/229 (6%)

Query: 120 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSP 178
            HTD V  LA++ +   ++AS S+D  +++WD++ GK    TL  H+D    V+      
Sbjct: 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD--SVVSSFSPDG 253

Query: 179 QILLSGSFDRSVVMKDARISTHSGFKWAVAAD-VESLAWDPHAEHSFVVSLEDGTIKGFD 237
            +L SGS D ++ + D R S+      +  +  V S+A+ P  +        DGT++ +D
Sbjct: 254 SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWD 312

Query: 238 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 297
           + T K         SS TL  H+  V ++S++P    L++ GS D  ++LWDL   +P  
Sbjct: 313 LETGKL-------LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL- 364

Query: 298 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 346
                     V SV+FS D   V++ G + G + +WD  + + + N   
Sbjct: 365 --KTLEGHSNVLSVSFSPDG-RVVSSGSTDGTVRLWDLSTGSLLRNLDG 410

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 29/186 (15%)

Query: 157 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-------KDARISTHSGFKWAVAA 209
              TL+ HT  V  VA++     +L +GS D ++ +           +  H+G    VAA
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 210 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN 269
             +                 D TI+ +D+ T          +   TL  H   V +++++
Sbjct: 60  SADG--------TYLASGSSDKTIRLWDLET---------GECVRTLTGHTSYVSSVAFS 102

Query: 270 PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK 329
           P    +L++ S DK +K+WD+   +  C+ +       V SVAFS D  FV A     G 
Sbjct: 103 PD-GRILSSSSRDKTIKVWDVETGK--CLTTLRGHTDWVNSVAFSPDGTFV-ASSSQDGT 158

Query: 330 LEIWDT 335
           +++WD 
Sbjct: 159 IKLWDL 164

Length = 289

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 63.0 bits (153), Expect = 6e-11
 Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 25/229 (10%)

Query: 114 IKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT--------LEHHT 165
           IK K   HT S+L L +N  F  ILAS S D  +++W++     ++         L+ H 
Sbjct: 68  IKLK--GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125

Query: 166 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV 225
            K+  + WN  +  I+ S  FD  V + D   +    F+  +   + SL W+        
Sbjct: 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIE-NEKRAFQINMPKKLSSLKWNIKG----- 179

Query: 226 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN---LLATG-ST 281
            +L  GT  G  +     DP      SSF +H   K    I  + L  +   +L+TG S 
Sbjct: 180 -NLLSGTCVGKHMHII--DPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK 236

Query: 282 DKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 328
           + M  +KLWDL N   + +      A A     + E +  +  IG   G
Sbjct: 237 NNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285

Length = 568

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 61.3 bits (147), Expect = 2e-10
 Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 24/257 (9%)

Query: 99  EEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN 158
             + K K  K  +        S            E   +L +  +D  V + D++    +
Sbjct: 8   SSENKSKLLKKSELGPSLNSLSLLSLGSS-----ESGILLLALLSDSLVSLPDLS----S 58

Query: 159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAW 216
           L L  H D + ++A++    ++LLSGS D ++ + D           +    + V  LA 
Sbjct: 59  LLLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117

Query: 217 DPHAEHSFVVSLE--DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 274
                +S +++    DGT+K +D+        ST  +   TL  H ++V +++++P    
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDL--------STPGKLIRTLEGHSESVTSLAFSPDGKL 169

Query: 275 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
           L +  S D  +KLWDL       +++       V S+AFS D   ++A G S G + +WD
Sbjct: 170 LASGSSLDGTIKLWDLR--TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Query: 335 TLSDAGISNRFSKYSKP 351
             +   + +  S +S  
Sbjct: 228 LSTGKLLRSTLSGHSDS 244

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 59.3 bits (142), Expect = 1e-09
 Identities = 59/240 (24%), Positives = 103/240 (42%), Gaps = 41/240 (17%)

Query: 65  GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 124
           G+ +A GS +  I +WDL           L G                        H+ S
Sbjct: 253 GSLLASGSSDGTIRLWDLR--SSSSLLRTLSG------------------------HSSS 286

Query: 125 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILL 182
           VL +A++ +   +LAS S+D  V++WD+  GK    LTL+ H   V +++++     ++ 
Sbjct: 287 VLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345

Query: 183 SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 242
            GS D ++ + D R            ++V S+++ P        S  DGT++ +D+ T  
Sbjct: 346 GGSDDGTIRLWDLRTGKPL-KTLEGHSNVLSVSFSPDGRVVSSGS-TDGTVRLWDLSTGS 403

Query: 243 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 302
                        L  H   V ++ ++P     LA+GS+D  ++LWDL  +  S   S +
Sbjct: 404 LLR---------NLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTSLKSVSFSPD 453

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 56.6 bits (136), Expect = 9e-09
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 13/166 (7%)

Query: 127 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF 186
           G+ WN   ++ +AS++ +  V++WDVA  +    ++ H  +V ++ ++   P +L SGS 
Sbjct: 537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD 596

Query: 187 DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD 246
           D SV +         G      A++  + +   +  S      D  +  +D+R  K    
Sbjct: 597 DGSVKLWSINQGVSIG-TIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--- 652

Query: 247 STSQQSSFTLHAHDKAVCTISYNPLV-PNLLATGSTDKMVKLWDLS 291
                   T+  H K   T+SY   V  + L + STD  +KLWDLS
Sbjct: 653 -----PLCTMIGHSK---TVSYVRFVDSSTLVSSSTDNTLKLWDLS 690

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           HT  V  ++++    N+LASA AD  V +WDV  GK    ++ H+D++ ++ WN     +
Sbjct: 124 HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG-SL 182

Query: 181 LLSGSFDRSVVMKDARIST 199
           L + S D+ + + D R  T
Sbjct: 183 LCTTSKDKKLNIIDPRDGT 201

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 251 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 289
           +   TL  H   V +++++P   NLLA+GS D  V++WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 9e-05
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWD 151
           HT  V  +A++ +  N+LAS S D  V++WD
Sbjct: 10  HTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 249 SQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 289
           S +   TL  H   V +++++P     LA+GS D  +KLWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 210 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT----LHAHDKAVCT 265
            +  +A++P        + EDGTI G+ I      P+    Q+       L  H K V  
Sbjct: 77  PIIDVAFNPFDPQKLFTASEDGTIMGWGI------PEEGLTQNISDPIVHLQGHTKKVGI 130

Query: 266 ISYNPLVPNLLATGSTDKMVKLWDL 290
           +S++P   N+LA+   D +V +WD+
Sbjct: 131 VSFHPSAMNVLASAGADMVVNVWDV 155

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWD 151
           HT  V  +A++ +    LAS S D  +K+WD
Sbjct: 11  HTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 155 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 190
           GK   TL+ HT  V +VA++     +L SGS D +V
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDG-NLLASGSDDGTV 35

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 155 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 190
           G+   TL+ HT  V +VA++    + L SGS D ++
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDG-KYLASGSDDGTI 36

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
KOG0270	463	consensus WD40 repeat-containing protein [Function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0269	839	consensus WD40 repeat-containing protein [Function	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	99.98
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.98
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.98
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.98
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.98
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG1273	405	consensus WD40 repeat protein [General function pr	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.94
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.94
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.94
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.93
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG1188	376	consensus WD40 repeat protein [General function pr	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.9
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG1310	758	consensus WD40 repeat protein [General function pr	99.89
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.88
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.88
KOG1188	376	consensus WD40 repeat protein [General function pr	99.88
KOG0649	325	consensus WD40 repeat protein [General function pr	99.88
PRK11028	330	6-phosphogluconolactonase; Provisional	99.86
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.86
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG4227	609	consensus WD40 repeat protein [General function pr	99.85
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.85
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.85
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.84
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.84
KOG1963	792	consensus WD40 repeat protein [General function pr	99.84
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.83
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.82
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.82
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.82
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.81
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.81
PRK01742	429	tolB translocation protein TolB; Provisional	99.8
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
KOG2139	445	consensus WD40 repeat protein [General function pr	99.79
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.79
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.79
KOG1334	559	consensus WD40 repeat protein [General function pr	99.78
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.77
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.77
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.77
KOG1310	758	consensus WD40 repeat protein [General function pr	99.77
KOG2139	445	consensus WD40 repeat protein [General function pr	99.77
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.77
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.76
KOG1963	792	consensus WD40 repeat protein [General function pr	99.76
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.75
KOG4227	609	consensus WD40 repeat protein [General function pr	99.75
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.73
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.73
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.73
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.73
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.72
PRK03629	429	tolB translocation protein TolB; Provisional	99.72
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.72
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.72
PRK04922	433	tolB translocation protein TolB; Provisional	99.71
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.71
PRK03629	429	tolB translocation protein TolB; Provisional	99.71
PRK05137	435	tolB translocation protein TolB; Provisional	99.7
PRK02889	427	tolB translocation protein TolB; Provisional	99.7
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.69
PRK04922	433	tolB translocation protein TolB; Provisional	99.69
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.68
PRK05137	435	tolB translocation protein TolB; Provisional	99.67
KOG1334	559	consensus WD40 repeat protein [General function pr	99.67
PRK02889	427	tolB translocation protein TolB; Provisional	99.67
KOG2321	703	consensus WD40 repeat protein [General function pr	99.66
KOG2321	703	consensus WD40 repeat protein [General function pr	99.64
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.63
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.63
PRK04792	448	tolB translocation protein TolB; Provisional	99.61
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.6
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.59
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.59
PRK04792	448	tolB translocation protein TolB; Provisional	99.59
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.58
PRK01029	428	tolB translocation protein TolB; Provisional	99.58
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.58
KOG4547	541	consensus WD40 repeat-containing protein [General	99.57
PRK00178	430	tolB translocation protein TolB; Provisional	99.56
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.56
PRK00178	430	tolB translocation protein TolB; Provisional	99.55
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.55
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.55
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.55
PRK01029	428	tolB translocation protein TolB; Provisional	99.55
KOG4547	541	consensus WD40 repeat-containing protein [General	99.53
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.52
KOG2315	566	consensus Predicted translation initiation factor	99.52
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.51
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.49
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.48
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.47
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.45
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.44
COG4946	668	Uncharacterized protein related to the periplasmic	99.44
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.43
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.39
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.38
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.37
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.37
KOG2314	698	consensus Translation initiation factor 3, subunit	99.35
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.34
KOG2315	566	consensus Predicted translation initiation factor	99.33
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.3
PRK04043	419	tolB translocation protein TolB; Provisional	99.28
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.28
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.27
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.25
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.24
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.22
COG4946	668	Uncharacterized protein related to the periplasmic	99.22
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.2
KOG2314	698	consensus Translation initiation factor 3, subunit	99.2
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.19
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.18
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.18
PRK04043	419	tolB translocation protein TolB; Provisional	99.17
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.16
KOG2695	425	consensus WD40 repeat protein [General function pr	99.14
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.13
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.12
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.11
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.11
KOG2695	425	consensus WD40 repeat protein [General function pr	99.09
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.09
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.04
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.04
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.04
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.03
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.03
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.01
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.98
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.97
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.96
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.95
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.95
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.89
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.88
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.86
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.83
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.83
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.81
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.8
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.8
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.8
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.8
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.8
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.78
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.78
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.78
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.77
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.77
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.77
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.75
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.73
KOG3621	726	consensus WD40 repeat-containing protein [General	98.68
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.67
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.66
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.6
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.57
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.56
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.53
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.52
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.52
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.46
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.46
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.44
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.43
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.42
PRK02888	635	nitrous-oxide reductase; Validated	98.41
COG3391	381	Uncharacterized conserved protein [Function unknow	98.37
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.36
KOG3621	726	consensus WD40 repeat-containing protein [General	98.31
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.31
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.28
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	98.24
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.24
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.22
KOG2395	644	consensus Protein involved in vacuole import and d	98.21
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.19
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.18
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.17
PRK02888	635	nitrous-oxide reductase; Validated	98.15
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.13
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.12
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.09
COG3391	381	Uncharacterized conserved protein [Function unknow	98.07
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.06
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.01
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.98
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.96
KOG2444	238	consensus WD40 repeat protein [General function pr	97.94
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.9
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.85
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.85
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.81
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.8
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.77
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.75
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.72
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.72
PHA02713	557	hypothetical protein; Provisional	97.68
KOG2395	644	consensus Protein involved in vacuole import and d	97.68
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.65
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.6
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.58
KOG2247	615	consensus WD40 repeat-containing protein [General	97.58
KOG2444	238	consensus WD40 repeat protein [General function pr	97.56
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.52
PHA02713	557	hypothetical protein; Provisional	97.51
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.46
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.45
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.44
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.43
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.42
PRK13616	591	lipoprotein LpqB; Provisional	97.36
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.33
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.26
PRK13616	591	lipoprotein LpqB; Provisional	97.24
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.24
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.2
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.17
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.17
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.15
PHA03098	534	kelch-like protein; Provisional	97.15
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.12
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.06
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.03
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.01
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.01
PHA03098	534	kelch-like protein; Provisional	96.99
PHA02790	480	Kelch-like protein; Provisional	96.88
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.87
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.74
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.69
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.58
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.56
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.53
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.51
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.28
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.22
PRK10115	686	protease 2; Provisional	96.13
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.13
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.01
KOG2247	615	consensus WD40 repeat-containing protein [General	96.01
COG5167	776	VID27 Protein involved in vacuole import and degra	95.97
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.93
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.92
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.89
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.73
PRK10115	686	protease 2; Provisional	95.67
PHA02790	480	Kelch-like protein; Provisional	95.42
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.42
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.4
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.39
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.36
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.32
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.19
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.07
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.05
COG5167	776	VID27 Protein involved in vacuole import and degra	94.99
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.9
PLN02153	341	epithiospecifier protein	94.83
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.62
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	94.52
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.42
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.41
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.19
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.11
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.07
PLN02153	341	epithiospecifier protein	93.74
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.74
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.61
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	93.54
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	93.37
COG4590	733	ABC-type uncharacterized transport system, permeas	93.34
PLN02193	470	nitrile-specifier protein	93.3
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.2
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	93.12
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	93.02
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.02
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.98
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	92.81
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.75
COG5276	370	Uncharacterized conserved protein [Function unknow	92.67
PF12768	281	Rax2: Cortical protein marker for cell polarity	92.64
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.64
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.57
PF12768	281	Rax2: Cortical protein marker for cell polarity	92.56
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	92.44
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.33
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	92.3
PRK13684	334	Ycf48-like protein; Provisional	92.05
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.93
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.89
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	91.89
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	91.87
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	91.82
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.72
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	91.69
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.53
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.24
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	90.99
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	90.99
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.74
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.4
PLN02193	470	nitrile-specifier protein	90.32
COG4880	603	Secreted protein containing C-terminal beta-propel	89.42
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	89.39
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.19
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	89.18
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.11
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	89.1
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	88.88
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.7
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	88.41
PRK13684	334	Ycf48-like protein; Provisional	87.88
KOG3616	1636	consensus Selective LIM binding factor [Transcript	86.69
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	86.67
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	86.61
KOG2727	1244	consensus Rab3 GTPase-activating protein, non-cata	85.36
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	84.6
COG5276	370	Uncharacterized conserved protein [Function unknow	84.51
COG5308	1263	NUP170 Nuclear pore complex subunit [Intracellular	84.32
COG4590	733	ABC-type uncharacterized transport system, permeas	84.3
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	83.85
COG1520	370	FOG: WD40-like repeat [Function unknown]	83.72
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	82.8
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	81.91
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	81.25
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	81.2

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-50  Score=320.35  Aligned_cols=331  Identities=47%  Similarity=0.857  Sum_probs=292.1

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      +.+.|++++|+||+.+++...+++|+|+....   ++|.||+..++.+|+|++|+.+...-...|+|+|.|+.|..|.||
T Consensus       131 ~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~---nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW  207 (463)
T KOG0270|consen  131 EQVKPSDNLILCARNEDDVSYLEVYVYNEEEE---NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW  207 (463)
T ss_pred             ceeccCCcEEEEeeccCCceEEEEEEEcCCCc---ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence            46889999999999999999999999999876   999999999999999999999855555568999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      |++-.+.+.|...++......      +.++.+......+|+..|.+++|+....+.||+|+.|.+|++||+.++++...
T Consensus       208 DLDI~d~v~P~~~LGs~~sk~------~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s  281 (463)
T KOG0270|consen  208 DLDIVDAVLPCVTLGSKASKK------KKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSS  281 (463)
T ss_pred             ccccccccccceeechhhhhh------hhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCccee
Confidence            999888888888777322211      11222233455689999999999998889999999999999999999999999


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      +..|...|.++.|+|..+.+|++|+.|+++.+.|.|........+...+.|..++|+|...+.+++++.||+|+-+|+|+
T Consensus       282 ~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~  361 (463)
T KOG0270|consen  282 ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN  361 (463)
T ss_pred             hhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCC
Confidence            99999999999999999999999999999999999987777778899999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeE
Q 018293          241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFV  320 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  320 (358)
                      .        .++++++..|..+|.++++++.-+.++++++.|+.|++|++....+..+....-.-+...|+++.|+-.+.
T Consensus       362 ~--------~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~  433 (463)
T KOG0270|consen  362 P--------GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFT  433 (463)
T ss_pred             C--------CCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceE
Confidence            7        48999999999999999999988899999999999999999887765554444444568889999999889


Q ss_pred             EEEEccCCeEEEEEccCCCccccccccC
Q 018293          321 LAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       321 l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                      ++.|+..+.++|||+.+...+.+.|..+
T Consensus       434 la~GG~k~~~~vwd~~~~~~V~kaF~~~  461 (463)
T KOG0270|consen  434 LAFGGEKAVLRVWDIFTNSPVRKAFGSR  461 (463)
T ss_pred             EEecCccceEEEeecccChhHHHhhccc
Confidence            9999999999999999999888877654

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.5e-49  Score=307.57  Aligned_cols=293  Identities=26%  Similarity=0.371  Sum_probs=251.0

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|+|++..|++|..+.     .+.+||............    ....++|++|       +|||+.||+|+.||+|++|
T Consensus       121 ~~fsp~g~~l~tGsGD~-----TvR~WD~~TeTp~~t~Kg----H~~WVlcvaw-------sPDgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  121 VQFSPTGSRLVTGSGDT-----TVRLWDLDTETPLFTCKG----HKNWVLCVAW-------SPDGKKIASGSKDGSIRLW  184 (480)
T ss_pred             EEecCCCceEEecCCCc-----eEEeeccCCCCcceeecC----CccEEEEEEE-------CCCcchhhccccCCeEEEe
Confidence            47999999999998776     667777655322222222    3445568888       8999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC----CCcEEEEEEcCCeEEEEECCCCc
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE----FRNILASASADKQVKIWDVAAGK  156 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~l~s~~~dg~v~iwd~~~~~  156 (358)
                      |..++++..                          ..+.+|...|++++|.|-    ...+||+++.||.|+|||+..++
T Consensus       185 dpktg~~~g--------------------------~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~  238 (480)
T KOG0271|consen  185 DPKTGQQIG--------------------------RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT  238 (480)
T ss_pred             cCCCCCccc--------------------------ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce
Confidence            988766544                          256789999999999763    14589999999999999999999


Q ss_pred             eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc-----------CC------
Q 018293          157 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD-----------PH------  219 (358)
Q Consensus       157 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-----------~~------  219 (358)
                      ++..+.+|+.+|+|++|--+|  ++++++.|++|++|+...+.....+.+|...|+.++.+           |.      
T Consensus       239 ~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~  316 (480)
T KOG0271|consen  239 CVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS  316 (480)
T ss_pred             EEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence            999999999999999998665  89999999999999999998888888999999988776           21      


Q ss_pred             ------------------CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC
Q 018293          220 ------------------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  281 (358)
Q Consensus       220 ------------------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~  281 (358)
                                        ++..+++|++|.++.+|+....        .+++..+.+|..-|+.+.|+||+ +++++++.
T Consensus       317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~--------kkpi~rmtgHq~lVn~V~fSPd~-r~IASaSF  387 (480)
T KOG0271|consen  317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS--------KKPITRMTGHQALVNHVSFSPDG-RYIASASF  387 (480)
T ss_pred             hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc--------ccchhhhhchhhheeeEEECCCc-cEEEEeec
Confidence                              1236999999999999998776        36888999999999999999999 99999999


Q ss_pred             CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCc
Q 018293          282 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS  349 (358)
Q Consensus       282 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~  349 (358)
                      |+.|++||.++++  .+..+.+|-+.|..++|+.|.+ +|++|+.|.++++|++++.+....+.+|..
T Consensus       388 DkSVkLW~g~tGk--~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkKl~~DLpGh~D  452 (480)
T KOG0271|consen  388 DKSVKLWDGRTGK--FLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKKLKQDLPGHAD  452 (480)
T ss_pred             ccceeeeeCCCcc--hhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeeeecccCCCCCc
Confidence            9999999999999  6778899999999999999999 799999999999999999887777666643

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.9e-48  Score=303.75  Aligned_cols=275  Identities=20%  Similarity=0.282  Sum_probs=246.7

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCC--CceEEecCCCCeEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK--GNFMAVGSMEPAIEI   79 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~g~~dg~i~v   79 (358)
                      .|++++..|++|+-++     .+.+|+.........+..|...+    .++.|       +|.  +.-||+|+.||++++
T Consensus       182 ~fS~ds~~laT~swsG-----~~kvW~~~~~~~~~~l~gH~~~v----~~~~f-------hP~~~~~~lat~s~Dgtvkl  245 (459)
T KOG0272|consen  182 SFSRDSKHLATGSWSG-----LVKVWSVPQCNLLQTLRGHTSRV----GAAVF-------HPVDSDLNLATASADGTVKL  245 (459)
T ss_pred             EeecCCCeEEEeecCC-----ceeEeecCCcceeEEEeccccce----eeEEE-------ccCCCccceeeeccCCceee
Confidence            5899999999999998     78888877764445555553333    36666       554  678999999999999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  159 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  159 (358)
                      |++++.                           .+...+.+|...|..++|+|+ +++|+|++.|.+-++||+++++.+.
T Consensus       246 w~~~~e---------------------------~~l~~l~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~~tk~ElL  297 (459)
T KOG0272|consen  246 WKLSQE---------------------------TPLQDLEGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDLETKSELL  297 (459)
T ss_pred             eccCCC---------------------------cchhhhhcchhhheeeeecCC-CceeeecccccchhhcccccchhhH
Confidence            999753                           334467799999999999999 7799999999999999999999999


Q ss_pred             eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcc
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR  239 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~  239 (358)
                      ...+|...|.+++|++|| .++++|+.|..-+|||++++.++..+.+|..+|..++|+| +++.+++|+.|++++|||++
T Consensus       298 ~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR  375 (459)
T KOG0272|consen  298 LQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLR  375 (459)
T ss_pred             hhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeec
Confidence            999999999999999999 8999999999999999999999998999999999999999 56799999999999999999


Q ss_pred             cCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCe
Q 018293          240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF  319 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  319 (358)
                      ..         ..+..+.+|..-|+.++|+|..+.+|+|++.|++++||..++..  ++..+.+|.+.|.++..++++++
T Consensus       376 ~r---------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~--~~ksLaGHe~kV~s~Dis~d~~~  444 (459)
T KOG0272|consen  376 MR---------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS--PLKSLAGHEGKVISLDISPDSQA  444 (459)
T ss_pred             cc---------ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc--cchhhcCCccceEEEEeccCCce
Confidence            87         77999999999999999999666999999999999999999988  68889999999999999999995


Q ss_pred             EEEEEccCCeEEEEE
Q 018293          320 VLAIGGSKGKLEIWD  334 (358)
Q Consensus       320 ~l~~~~~dg~i~vw~  334 (358)
                       +++++.|+++++|.
T Consensus       445 -i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  445 -IATSSFDRTIKLWR  458 (459)
T ss_pred             -EEEeccCceeeecc
Confidence             99999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.1e-47  Score=299.37  Aligned_cols=251  Identities=23%  Similarity=0.307  Sum_probs=232.4

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC-CCcEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNIL  138 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l  138 (358)
                      .||.|++.||||+.+|.++||+..+.                           .....+.+|...|.++.|+|. ...-+
T Consensus       182 ~fS~ds~~laT~swsG~~kvW~~~~~---------------------------~~~~~l~gH~~~v~~~~fhP~~~~~~l  234 (459)
T KOG0272|consen  182 SFSRDSKHLATGSWSGLVKVWSVPQC---------------------------NLLQTLRGHTSRVGAAVFHPVDSDLNL  234 (459)
T ss_pred             EeecCCCeEEEeecCCceeEeecCCc---------------------------ceeEEEeccccceeeEEEccCCCccce
Confidence            46899999999999999999999754                           334467799999999999998 46689


Q ss_pred             EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293          139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  218 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  218 (358)
                      |+|+.||++++|++.+..++..+.+|...|..++|+|+| ++|++++.|.+-++||++++.......+|...|.+++|+|
T Consensus       235 at~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~  313 (459)
T KOG0272|consen  235 ATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP  313 (459)
T ss_pred             eeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhcccccccceeEecC
Confidence            999999999999999999999999999999999999999 9999999999999999999999988999999999999999


Q ss_pred             CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceee
Q 018293          219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  298 (358)
Q Consensus       219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  298 (358)
                      +|. ++++|+.|..-+|||+|++         .++..+.+|..+|.++.|+|+| ..|+||+.|++++|||++..+  .+
T Consensus       314 DGS-L~~tGGlD~~~RvWDlRtg---------r~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~--~l  380 (459)
T KOG0272|consen  314 DGS-LAATGGLDSLGRVWDLRTG---------RCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRS--EL  380 (459)
T ss_pred             CCc-eeeccCccchhheeecccC---------cEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccc--cc
Confidence            654 9999999999999999998         8899999999999999999999 999999999999999999988  58


Q ss_pred             EecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcCC
Q 018293          299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP  351 (358)
Q Consensus       299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  351 (358)
                      ..+.+|..-|+.++|+|...++|++++.|+++++|...++.+++.+.+|..+.
T Consensus       381 y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV  433 (459)
T KOG0272|consen  381 YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKV  433 (459)
T ss_pred             eecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccce
Confidence            88999999999999999655579999999999999999999999988887653

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-45  Score=285.81  Aligned_cols=279  Identities=24%  Similarity=0.369  Sum_probs=241.3

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCC--CceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGD--PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE   78 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~   78 (358)
                      ++++|||..|+.|+.++     +|.+|+...++.  ..+..|.+     .+.+++|-|...  .|..++||+++.||.|+
T Consensus       163 vawsPDgk~iASG~~dg-----~I~lwdpktg~~~g~~l~gH~K-----~It~Lawep~hl--~p~~r~las~skDg~vr  230 (480)
T KOG0271|consen  163 VAWSPDGKKIASGSKDG-----SIRLWDPKTGQQIGRALRGHKK-----WITALAWEPLHL--VPPCRRLASSSKDGSVR  230 (480)
T ss_pred             EEECCCcchhhccccCC-----eEEEecCCCCCcccccccCccc-----ceeEEeeccccc--CCCccceecccCCCCEE
Confidence            47899999999999998     899999766532  23334433     344889977533  57888999999999999


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN  158 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  158 (358)
                      |||+..+                           .....+.+|+.+|+|+.|-.+  .++++|+.|++|++|+...|++.
T Consensus       231 IWd~~~~---------------------------~~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~  281 (480)
T KOG0271|consen  231 IWDTKLG---------------------------TCVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLC  281 (480)
T ss_pred             EEEccCc---------------------------eEEEEeccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHH
Confidence            9999643                           334466799999999999866  39999999999999999999999


Q ss_pred             eeecccccceeeEEEc-----------CCC------------------------CcEEEEEeCCCcEEEEEcccCC-Ccc
Q 018293          159 LTLEHHTDKVQAVAWN-----------HHS------------------------PQILLSGSFDRSVVMKDARIST-HSG  202 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~-----------~~~------------------------~~~l~~~~~dg~i~i~d~~~~~-~~~  202 (358)
                      +.+++|...|+.++.+           |.+                        +..+++|+.|.++.+|+....+ ++.
T Consensus       282 r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~  361 (480)
T KOG0271|consen  282 RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT  361 (480)
T ss_pred             HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchh
Confidence            9999999999999877           222                        1359999999999999987654 566


Q ss_pred             ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC
Q 018293          203 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD  282 (358)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d  282 (358)
                      ...+|..-|+.+.|+|+ ..++++++-|..|++||.+++         +.+..+.+|-.+|..++|+.|. ++|++|+.|
T Consensus       362 rmtgHq~lVn~V~fSPd-~r~IASaSFDkSVkLW~g~tG---------k~lasfRGHv~~VYqvawsaDs-RLlVS~SkD  430 (480)
T KOG0271|consen  362 RMTGHQALVNHVSFSPD-GRYIASASFDKSVKLWDGRTG---------KFLASFRGHVAAVYQVAWSADS-RLLVSGSKD  430 (480)
T ss_pred             hhhchhhheeeEEECCC-ccEEEEeecccceeeeeCCCc---------chhhhhhhccceeEEEEeccCc-cEEEEcCCC
Confidence            67889999999999995 569999999999999999998         8888999999999999999998 999999999


Q ss_pred             CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEE
Q 018293          283 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  334 (358)
Q Consensus       283 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~  334 (358)
                      .++++||+++.+  ....+.+|...|.++.|+|||+ .+++|+.|..+++|.
T Consensus       431 sTLKvw~V~tkK--l~~DLpGh~DEVf~vDwspDG~-rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  431 STLKVWDVRTKK--LKQDLPGHADEVFAVDWSPDGQ-RVASGGKDKVLRLWR  479 (480)
T ss_pred             ceEEEEEeeeee--ecccCCCCCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence            999999999988  6778999999999999999999 699999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.3e-43  Score=265.01  Aligned_cols=281  Identities=20%  Similarity=0.326  Sum_probs=239.4

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      +.++++.+.++.++.++     ++-+|+.-+..          ....+|+...|+- ..+|+|.|+++|+|+.|+...||
T Consensus        61 ~~ws~Dsr~ivSaSqDG-----klIvWDs~Ttn----------K~haipl~s~WVM-tCA~sPSg~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   61 MDWSTDSRRIVSASQDG-----KLIVWDSFTTN----------KVHAIPLPSSWVM-TCAYSPSGNFVACGGLDNKCSIY  124 (343)
T ss_pred             eEecCCcCeEEeeccCC-----eEEEEEccccc----------ceeEEecCceeEE-EEEECCCCCeEEecCcCceeEEE
Confidence            46889999999998888     88999987641          1122334455643 34679999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      ++.+.+..                     ...+....+.+|++.+.|+.|-++ + .|++++.|.+..+||+++++.+..
T Consensus       125 ~ls~~d~~---------------------g~~~v~r~l~gHtgylScC~f~dD-~-~ilT~SGD~TCalWDie~g~~~~~  181 (343)
T KOG0286|consen  125 PLSTRDAE---------------------GNVRVSRELAGHTGYLSCCRFLDD-N-HILTGSGDMTCALWDIETGQQTQV  181 (343)
T ss_pred             eccccccc---------------------ccceeeeeecCccceeEEEEEcCC-C-ceEecCCCceEEEEEcccceEEEE
Confidence            99753221                     123344567899999999999987 4 788999999999999999999999


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      |.+|.+.|.++.++|..++.+++|+-|+..++||++.+...+.+.+|+..|++++|.|+ +.-|++|++|++.++||+|.
T Consensus       182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~-G~afatGSDD~tcRlyDlRa  260 (343)
T KOG0286|consen  182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPS-GDAFATGSDDATCRLYDLRA  260 (343)
T ss_pred             ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccC-CCeeeecCCCceeEEEeecC
Confidence            99999999999999944499999999999999999999999989999999999999995 55899999999999999998


Q ss_pred             CCCCCCCCCCCccEEE--eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCC
Q 018293          241 AKSDPDSTSQQSSFTL--HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP  318 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  318 (358)
                      .         +.+..+  ..-..+|++++|+..| ++|++|..|.++.+||.-.++  .+..+.+|.+.|+++..+|||.
T Consensus       261 D---------~~~a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e--~vg~L~GHeNRvScl~~s~DG~  328 (343)
T KOG0286|consen  261 D---------QELAVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGE--RVGVLAGHENRVSCLGVSPDGM  328 (343)
T ss_pred             C---------cEEeeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccc--eEEEeeccCCeeEEEEECCCCc
Confidence            7         333333  3335689999999998 999999999999999998887  5667889999999999999999


Q ss_pred             eEEEEEccCCeEEEEE
Q 018293          319 FVLAIGGSKGKLEIWD  334 (358)
Q Consensus       319 ~~l~~~~~dg~i~vw~  334 (358)
                       .+++|+.|..++||.
T Consensus       329 -av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  329 -AVATGSWDSTLRIWA  343 (343)
T ss_pred             -EEEecchhHheeecC
Confidence             699999999999994

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.6e-42  Score=293.64  Aligned_cols=266  Identities=21%  Similarity=0.412  Sum_probs=227.0

Q ss_pred             cccCCCceEEecCCCCeEEEEEccccc--CcCceeecCCccccc--ccccccCCceeccccccCCCcccEEEEecCCCCC
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVID--EVQPHVILGGIDEEK--KKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  135 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  135 (358)
                      .|++|+.+||.|..|..|++|.+....  .+....-+...+.+.  ................+.||.++|..+.|+|+ .
T Consensus       385 ~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd-~  463 (707)
T KOG0263|consen  385 EFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD-R  463 (707)
T ss_pred             eecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc-c
Confidence            459999999999999999999997422  111111111111000  00111222334445568899999999999999 7


Q ss_pred             cEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEE
Q 018293          136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA  215 (358)
Q Consensus       136 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  215 (358)
                      ++|++++.|++||+|.+.+..++-.+++|..+|..+.|+|-| .+|++++.|++.++|......+.+...+|-+.+.|+.
T Consensus       464 rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~  542 (707)
T KOG0263|consen  464 RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVS  542 (707)
T ss_pred             cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhhhcccccccceEE
Confidence            899999999999999999999999999999999999999999 9999999999999999999888888899999999999


Q ss_pred             EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      |+| +.+++++|+.|.+|++||+.++         ..++.+.+|.++|.+++|+|+| ++|++|+.||.|.+||+.+++ 
T Consensus       543 FHP-Ns~Y~aTGSsD~tVRlWDv~~G---------~~VRiF~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~-  610 (707)
T KOG0263|consen  543 FHP-NSNYVATGSSDRTVRLWDVSTG---------NSVRIFTGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGS-  610 (707)
T ss_pred             ECC-cccccccCCCCceEEEEEcCCC---------cEEEEecCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCc-
Confidence            999 5679999999999999999998         7789999999999999999998 999999999999999999988 


Q ss_pred             eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          296 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       296 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                       .+..+.+|.+.|.++.|+.+|. +||+|+.|.+|++||+..-...
T Consensus       611 -~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  611 -LVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             -chhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhccc
Confidence             5777888999999999999999 7999999999999999764443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4e-43  Score=275.83  Aligned_cols=277  Identities=22%  Similarity=0.381  Sum_probs=237.3

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      ...|+|+.|++|+..+     ++.+|+...-.-..+...|    .+++.+++|       +++|.++++|+.+|.|++|+
T Consensus       103 ~WtPeGRRLltgs~SG-----EFtLWNg~~fnFEtilQaH----Ds~Vr~m~w-------s~~g~wmiSgD~gG~iKyWq  166 (464)
T KOG0284|consen  103 RWTPEGRRLLTGSQSG-----EFTLWNGTSFNFETILQAH----DSPVRTMKW-------SHNGTWMISGDKGGMIKYWQ  166 (464)
T ss_pred             EEcCCCceeEeecccc-----cEEEecCceeeHHHHhhhh----cccceeEEE-------ccCCCEEEEcCCCceEEecc
Confidence            4579999999998888     6677776432111222333    333448888       88999999999999999999


Q ss_pred             cccccCcCceeecCCcccccccccccCCceeccccccC-CCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKG-SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      .+-..                            +.... .|...|.+++|+|+ ...+++++.||+|+|||....+....
T Consensus       167 pnmnn----------------------------Vk~~~ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWdf~~~kee~v  217 (464)
T KOG0284|consen  167 PNMNN----------------------------VKIIQAHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWDFRMPKEERV  217 (464)
T ss_pred             cchhh----------------------------hHHhhHhhhhhhheeccCCC-CceeEEecCCCeEEEEeccCCchhhe
Confidence            86321                            22222 45599999999998 67999999999999999999888888


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      +.+|.-.|.+++|+|.. .++++++.|..|++||.+++.++.....|...|..+.|+|++ ++|++++.|..+++||+++
T Consensus       218 L~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~  295 (464)
T KOG0284|consen  218 LRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRT  295 (464)
T ss_pred             eccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhH
Confidence            99999999999999998 899999999999999999999999999999999999999966 8999999999999999997


Q ss_pred             CCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeE
Q 018293          241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFV  320 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  320 (358)
                      .         +.++.+.+|...++++.|+|-.+.+|.+|+.||.|..|.+...+++.. .-.+|...|++++|+|-|. +
T Consensus       296 m---------kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~-i~~AHd~~iwsl~~hPlGh-i  364 (464)
T KOG0284|consen  296 M---------KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE-IPPAHDGEIWSLAYHPLGH-I  364 (464)
T ss_pred             h---------HHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccC-CCcccccceeeeeccccce-e
Confidence            6         788899999999999999998889999999999999999986665333 3457899999999999998 8


Q ss_pred             EEEEccCCeEEEEEcc
Q 018293          321 LAIGGSKGKLEIWDTL  336 (358)
Q Consensus       321 l~~~~~dg~i~vw~~~  336 (358)
                      |++|+.|.++++|.-.
T Consensus       365 l~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  365 LATGSNDRTVRFWTRN  380 (464)
T ss_pred             EeecCCCcceeeeccC
Confidence            9999999999999764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7.4e-41  Score=246.90  Aligned_cols=294  Identities=18%  Similarity=0.252  Sum_probs=234.1

Q ss_pred             CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccc
Q 018293            6 NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI   85 (358)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~   85 (358)
                      +.+.+++..+-+    ..|..|+...+.=.....|.+..+.    .++-       .|+++.||+++. -.||+||+++.
T Consensus         8 d~~viLvsA~YD----hTIRfWqa~tG~C~rTiqh~dsqVN----rLei-------Tpdk~~LAaa~~-qhvRlyD~~S~   71 (311)
T KOG0315|consen    8 DDPVILVSAGYD----HTIRFWQALTGICSRTIQHPDSQVN----RLEI-------TPDKKDLAAAGN-QHVRLYDLNSN   71 (311)
T ss_pred             CCceEEEeccCc----ceeeeeehhcCeEEEEEecCcccee----eEEE-------cCCcchhhhccC-CeeEEEEccCC
Confidence            444554443333    3677788777522222233333222    2222       799999999984 58999999875


Q ss_pred             cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccc
Q 018293           86 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT  165 (358)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  165 (358)
                      ...                         ++..+.+|+..|+++.|..+ ++++++|+.||+++|||++...+.+.++ |.
T Consensus        72 np~-------------------------Pv~t~e~h~kNVtaVgF~~d-grWMyTgseDgt~kIWdlR~~~~qR~~~-~~  124 (311)
T KOG0315|consen   72 NPN-------------------------PVATFEGHTKNVTAVGFQCD-GRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HN  124 (311)
T ss_pred             CCC-------------------------ceeEEeccCCceEEEEEeec-CeEEEecCCCceEEEEeccCcccchhcc-CC
Confidence            432                         45567789999999999999 6799999999999999999977777776 77


Q ss_pred             cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCC
Q 018293          166 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD  244 (358)
Q Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~  244 (358)
                      .+|+++..+|+. ..|++|..+|.|++||+.......... .....+.++...|++ .+++++...|+.++|++-.... 
T Consensus       125 spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~-  201 (311)
T KOG0315|consen  125 SPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQT-  201 (311)
T ss_pred             CCcceEEecCCc-ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCc-
Confidence            999999999998 789999999999999999876544332 344679999999965 5899999999999999987432 


Q ss_pred             CCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEE
Q 018293          245 PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG  324 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  324 (358)
                        .....++.+++.|.+.+..+.++|++ ++|++++.|.+++||+..+. ......+.+|...++.++||.||+| |++|
T Consensus       202 --~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~Y-lvTa  276 (311)
T KOG0315|consen  202 --ASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEY-LVTA  276 (311)
T ss_pred             --cccceEhhheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccE-EEec
Confidence              12236677899999999999999998 99999999999999999887 3356677899999999999999997 8899


Q ss_pred             ccCCeEEEEEccCCCccccccccCcC
Q 018293          325 GSKGKLEIWDTLSDAGISNRFSKYSK  350 (358)
Q Consensus       325 ~~dg~i~vw~~~~~~~~~~~~~~~~~  350 (358)
                      +.|+.+++|++..++.++..-+|+..
T Consensus       277 ssd~~~rlW~~~~~k~v~qy~gh~K~  302 (311)
T KOG0315|consen  277 SSDHTARLWDLSAGKEVRQYQGHHKA  302 (311)
T ss_pred             CCCCceeecccccCceeeecCCcccc
Confidence            99999999999999998877766543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.4e-40  Score=250.93  Aligned_cols=254  Identities=22%  Similarity=0.345  Sum_probs=228.1

Q ss_pred             ccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEE
Q 018293           49 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  128 (358)
Q Consensus        49 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  128 (358)
                      +.++.|       ++|.+++++++.||.+.|||.-+.+.+..+.+                           ....|..+
T Consensus        58 i~~~~w-------s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl---------------------------~s~WVMtC  103 (343)
T KOG0286|consen   58 IYAMDW-------STDSRRIVSASQDGKLIVWDSFTTNKVHAIPL---------------------------PSSWVMTC  103 (343)
T ss_pred             eeeeEe-------cCCcCeEEeeccCCeEEEEEcccccceeEEec---------------------------CceeEEEE
Confidence            347777       89999999999999999999987665554332                           45789999


Q ss_pred             ecCCCCCcEEEEEEcCCeEEEEECCCC------ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc
Q 018293          129 AWNKEFRNILASASADKQVKIWDVAAG------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  202 (358)
Q Consensus       129 ~~~~~~~~~l~s~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  202 (358)
                      +|+|. ++++|+|+.|+...||++.+.      +..+.+.+|.+.+.++.|.+|+  .|++++.|.++.+||+++++...
T Consensus       104 A~sPS-g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~  180 (343)
T KOG0286|consen  104 AYSPS-GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQ  180 (343)
T ss_pred             EECCC-CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEE
Confidence            99999 779999999999999999855      4566789999999999999864  69999999999999999999998


Q ss_pred             ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC
Q 018293          203 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD  282 (358)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d  282 (358)
                      ...+|.+.|.++.+.|.+.+.+++|+-|+..++||+|.+         ...+.+.+|...|++++|.|+| .-+++|++|
T Consensus       181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~---------~c~qtF~ghesDINsv~ffP~G-~afatGSDD  250 (343)
T KOG0286|consen  181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG---------QCVQTFEGHESDINSVRFFPSG-DAFATGSDD  250 (343)
T ss_pred             EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc---------ceeEeecccccccceEEEccCC-CeeeecCCC
Confidence            889999999999999977889999999999999999998         8899999999999999999999 899999999


Q ss_pred             CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcC
Q 018293          283 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  350 (358)
Q Consensus       283 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  350 (358)
                      ++.++||++..+.+.++....-..+|++++||..|+ +|.+|..|.++.+||.-.++.+..+.+|..+
T Consensus       251 ~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~e~vg~L~GHeNR  317 (343)
T KOG0286|consen  251 ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGERVGVLAGHENR  317 (343)
T ss_pred             ceeEEEeecCCcEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeeccccceEEEeeccCCe
Confidence            999999999998777777666778999999999999 5777899999999999999998888887654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-40  Score=245.10  Aligned_cols=291  Identities=22%  Similarity=0.322  Sum_probs=238.2

Q ss_pred             CcccC-CCcEEEEEE--ecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCC-CceEEecCCCCe
Q 018293            1 MTINP-NDAVIVCAR--NEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAVGSMEPA   76 (358)
Q Consensus         1 l~~~p-~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~   76 (358)
                      ++||| -.+.|+++.  .-+-.+..++++.+...++......+-  ....--+.++|       +++ .+.+++++.||+
T Consensus        14 vqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~--d~~D~LfdV~W-------se~~e~~~~~a~GDGS   84 (311)
T KOG0277|consen   14 VQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY--DTEDGLFDVAW-------SENHENQVIAASGDGS   84 (311)
T ss_pred             eEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee--ecccceeEeee-------cCCCcceEEEEecCce
Confidence            36777 344444442  223335558888887643222222222  22223346666       444 567888899999


Q ss_pred             EEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc
Q 018293           77 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK  156 (358)
Q Consensus        77 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  156 (358)
                      ++|||+.                          .+..++..++.|+.+|.++.|++..+..+++++.|++|++|+....+
T Consensus        85 Lrl~d~~--------------------------~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   85 LRLFDLT--------------------------MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             EEEeccC--------------------------CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            9999964                          23446678889999999999999878889999999999999999999


Q ss_pred             eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEE
Q 018293          157 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF  236 (358)
Q Consensus       157 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~  236 (358)
                      .++++.+|...|...+|+|..++++++++.|+.+++||++..........|...+.++.|+..+.+++++|+.|+.|+.|
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w  218 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW  218 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence            99999999999999999999989999999999999999998766665777888999999999999999999999999999


Q ss_pred             EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293          237 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                      |+++.+        .++..+.+|.-.|..++|+|....+|++++.|-+++|||...+.. ++.....|...+..+.|++-
T Consensus       219 Dir~~r--------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds-~~e~~~~HtEFv~g~Dws~~  289 (311)
T KOG0277|consen  219 DIRNLR--------TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS-AIETVDHHTEFVCGLDWSLF  289 (311)
T ss_pred             ehhhcc--------ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh-hhhhhhccceEEeccccccc
Confidence            999983        788999999999999999998878999999999999999986553 56667789999999999986


Q ss_pred             CCeEEEEEccCCeEEEEEc
Q 018293          317 SPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       317 ~~~~l~~~~~dg~i~vw~~  335 (358)
                      ....+|+.+.|+.++||+.
T Consensus       290 ~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  290 DPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cCceeeecccccceeeecc
Confidence            6557999999999999984

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=8.5e-40  Score=245.09  Aligned_cols=249  Identities=24%  Similarity=0.316  Sum_probs=213.5

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      +.+.+++++.|.++.+|++...+.                      +...+...+.||+..|..+..+++ +++.++++.
T Consensus        27 ~~~~l~sasrDk~ii~W~L~~dd~----------------------~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~sw   83 (315)
T KOG0279|consen   27 NSDILVSASRDKTIIVWKLTSDDI----------------------KYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASW   83 (315)
T ss_pred             CCceEEEcccceEEEEEEeccCcc----------------------ccCceeeeeeccceEecceEEccC-CceEEeccc
Confidence            467899999999999999975322                      334556678899999999999999 779999999


Q ss_pred             CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee-cCCeeeEEEcCCC-C
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-AADVESLAWDPHA-E  221 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~-~  221 (358)
                      |+++++||+.+++..+.|.+|...|.+++|+++. +.+++|+.|.+|++|++............ ...|.|+.|+|+. +
T Consensus        84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~  162 (315)
T KOG0279|consen   84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESN  162 (315)
T ss_pred             cceEEEEEecCCcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCC
Confidence            9999999999999999999999999999999999 88999999999999998766544423332 7789999999974 6


Q ss_pred             CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec
Q 018293          222 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR  301 (358)
Q Consensus       222 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  301 (358)
                      .++++++.|++|++||+++.         +....+.+|.+.++.++++||| .+.++|+.||.+.+||++.++  .++.+
T Consensus       163 p~Ivs~s~DktvKvWnl~~~---------~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k--~lysl  230 (315)
T KOG0279|consen  163 PIIVSASWDKTVKVWNLRNC---------QLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGK--NLYSL  230 (315)
T ss_pred             cEEEEccCCceEEEEccCCc---------chhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCc--eeEec
Confidence            68999999999999999987         7788899999999999999999 899999999999999999998  45554


Q ss_pred             CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcCC
Q 018293          302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP  351 (358)
Q Consensus       302 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  351 (358)
                       .|...|.+++|+|+.. .|+. ..+..|+|||+.++..+.++-....++
T Consensus       231 -~a~~~v~sl~fspnry-wL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~  277 (315)
T KOG0279|consen  231 -EAFDIVNSLCFSPNRY-WLCA-ATATSIKIWDLESKAVVEELKLDGIGP  277 (315)
T ss_pred             -cCCCeEeeEEecCCce-eEee-ccCCceEEEeccchhhhhhcccccccc
Confidence             4678999999999975 3544 445569999999999888766555444

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.3e-40  Score=253.36  Aligned_cols=276  Identities=23%  Similarity=0.406  Sum_probs=241.4

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCC-CCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      -|+|+..+++++..+.     .+++|+..++. +..+..|.+...            .++|+..|++||+++.|-.+++|
T Consensus       115 ~~hp~~~~v~~as~d~-----tikv~D~~tg~~e~~LrGHt~sv~------------di~~~a~Gk~l~tcSsDl~~~LW  177 (406)
T KOG0295|consen  115 IFHPSEALVVSASEDA-----TIKVFDTETGELERSLRGHTDSVF------------DISFDASGKYLATCSSDLSAKLW  177 (406)
T ss_pred             eeccCceEEEEecCCc-----eEEEEEccchhhhhhhhcccccee------------EEEEecCccEEEecCCccchhhe
Confidence            4789999999986554     55666655542 344555554322            44558899999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      |.++                          .......+.+|+..|.++.|-|. +.++++++.|.+|+.|++.++-++.+
T Consensus       178 d~~~--------------------------~~~c~ks~~gh~h~vS~V~f~P~-gd~ilS~srD~tik~We~~tg~cv~t  230 (406)
T KOG0295|consen  178 DFDT--------------------------FFRCIKSLIGHEHGVSSVFFLPL-GDHILSCSRDNTIKAWECDTGYCVKT  230 (406)
T ss_pred             eHHH--------------------------HHHHHHHhcCcccceeeEEEEec-CCeeeecccccceeEEecccceeEEe
Confidence            9974                          23344566789999999999999 57999999999999999999999999


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC--------------CCCeEEE
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH--------------AEHSFVV  226 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~--------------~~~~~~~  226 (358)
                      +.+|...|..++.+.|| .++++++.|.++++|-+.+.++......|+.++.+++|.|.              +..++.+
T Consensus       231 ~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s  309 (406)
T KOG0295|consen  231 FPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS  309 (406)
T ss_pred             ccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe
Confidence            99999999999999999 99999999999999999999888888899999999999873              2358999


Q ss_pred             EecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCc
Q 018293          227 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG  306 (358)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  306 (358)
                      ++.|++|++||+.++         .++..+.+|...|..++|+|.| +||+++.+|+++++||+++.+  +......|..
T Consensus       310 ~SrDktIk~wdv~tg---------~cL~tL~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~--cmk~~~ah~h  377 (406)
T KOG0295|consen  310 GSRDKTIKIWDVSTG---------MCLFTLVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQ--CMKTLEAHEH  377 (406)
T ss_pred             ecccceEEEEeccCC---------eEEEEEecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccce--eeeccCCCcc
Confidence            999999999999998         8999999999999999999987 999999999999999999988  7888889999


Q ss_pred             eeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          307 AVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       307 ~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      .++++.|+.+..| +++|+-|.++++|..
T Consensus       378 fvt~lDfh~~~p~-VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  378 FVTSLDFHKTAPY-VVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeEEEecCCCCce-EEeccccceeeeeec
Confidence            9999999999995 899999999999974

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4e-38  Score=236.15  Aligned_cols=233  Identities=21%  Similarity=0.363  Sum_probs=190.9

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      ++||++.++++.|+++++||+.+++.                           ...+.+|...|.+++|+++ ...+++|
T Consensus        72 s~dg~~alS~swD~~lrlWDl~~g~~---------------------------t~~f~GH~~dVlsva~s~d-n~qivSG  123 (315)
T KOG0279|consen   72 SSDGNFALSASWDGTLRLWDLATGES---------------------------TRRFVGHTKDVLSVAFSTD-NRQIVSG  123 (315)
T ss_pred             ccCCceEEeccccceEEEEEecCCcE---------------------------EEEEEecCCceEEEEecCC-CceeecC
Confidence            79999999999999999999986533                           3356789999999999999 6799999


Q ss_pred             EcCCeEEEEECCCCceeeeeccc--ccceeeEEEcCCC-CcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293          142 SADKQVKIWDVAAGKCNLTLEHH--TDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  218 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  218 (358)
                      +.|.+|++|++... +..++..+  .+-|.|++|+|.. +.++++++.|+++++||+++-+......+|.+.++.++++|
T Consensus       124 SrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp  202 (315)
T KOG0279|consen  124 SRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP  202 (315)
T ss_pred             CCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC
Confidence            99999999998754 44444333  7899999999984 47999999999999999999998888889999999999999


Q ss_pred             CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceee
Q 018293          219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  298 (358)
Q Consensus       219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  298 (358)
                      || .+.++|+.||.+.+||++.+         +.++.+ .|...|.+++|+|+.  +.++...+..|+|||+.+...+..
T Consensus       203 DG-slcasGgkdg~~~LwdL~~~---------k~lysl-~a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~~~~v~~  269 (315)
T KOG0279|consen  203 DG-SLCASGGKDGEAMLWDLNEG---------KNLYSL-EAFDIVNSLCFSPNR--YWLCAATATSIKIWDLESKAVVEE  269 (315)
T ss_pred             CC-CEEecCCCCceEEEEEccCC---------ceeEec-cCCCeEeeEEecCCc--eeEeeccCCceEEEeccchhhhhh
Confidence            65 48999999999999999987         555555 467889999999975  444555566799999998763221


Q ss_pred             EecC--C-----CCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          299 ASRN--P-----KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       299 ~~~~--~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ....  +     ..-...+++|+++|+. |.+|-.|+.|++|.+..
T Consensus       270 l~~d~~g~s~~~~~~~clslaws~dG~t-Lf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  270 LKLDGIGPSSKAGDPICLSLAWSADGQT-LFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             ccccccccccccCCcEEEEEEEcCCCcE-EEeeecCCcEEEEEeec
Confidence            1111  1     1234667899999995 77899999999998753

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.4e-38  Score=254.66  Aligned_cols=248  Identities=26%  Similarity=0.478  Sum_probs=221.9

Q ss_pred             CCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccE
Q 018293           46 PAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV  125 (358)
Q Consensus        46 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  125 (358)
                      ..-..+++|       +.+|.+||+|+.||.++||+.+                            ..+...+..|+++|
T Consensus       235 nkdVT~L~W-------n~~G~~LatG~~~G~~riw~~~----------------------------G~l~~tl~~HkgPI  279 (524)
T KOG0273|consen  235 NKDVTSLDW-------NNDGTLLATGSEDGEARIWNKD----------------------------GNLISTLGQHKGPI  279 (524)
T ss_pred             cCCcceEEe-------cCCCCeEEEeecCcEEEEEecC----------------------------chhhhhhhccCCce
Confidence            344567777       8899999999999999999986                            33444667899999


Q ss_pred             EEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee
Q 018293          126 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  205 (358)
Q Consensus       126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  205 (358)
                      .++.|+.. +++|++++.|+++.+||..+++..+.+..|..+-..+.|-.+.  .|++++.|+.|+++.+....+.....
T Consensus       280 ~slKWnk~-G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~  356 (524)
T KOG0273|consen  280 FSLKWNKK-GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFI  356 (524)
T ss_pred             EEEEEcCC-CCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeee
Confidence            99999999 6799999999999999999999999999898887889997764  69999999999999999999988888


Q ss_pred             eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC--------cEEE
Q 018293          206 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP--------NLLA  277 (358)
Q Consensus       206 ~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~--------~~l~  277 (358)
                      +|.++|.++.|+|. +.+|++++.|+++++|.+...         .....+.+|...|..+.|+|.|+        ..++
T Consensus       357 GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~---------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~  426 (524)
T KOG0273|consen  357 GHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQS---------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA  426 (524)
T ss_pred             cccCceEEEEECCC-CceEEEecCCCeeEeeecCCC---------cchhhhhhhccceeeEeecCCCCccCCCcCCceEE
Confidence            99999999999995 559999999999999999876         77888999999999999999653        4789


Q ss_pred             EEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          278 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       278 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      +++.|++|++||+..+.  ++..+..|..+|.+++|+|+|+| +|+|+.||.|.+|++++++.++..
T Consensus       427 sas~dstV~lwdv~~gv--~i~~f~kH~~pVysvafS~~g~y-lAsGs~dg~V~iws~~~~~l~~s~  490 (524)
T KOG0273|consen  427 SASFDSTVKLWDVESGV--PIHTLMKHQEPVYSVAFSPNGRY-LASGSLDGCVHIWSTKTGKLVKSY  490 (524)
T ss_pred             EeecCCeEEEEEccCCc--eeEeeccCCCceEEEEecCCCcE-EEecCCCCeeEeccccchheeEee
Confidence            99999999999999998  57778899999999999999996 999999999999999998877653

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.1e-39  Score=254.98  Aligned_cols=240  Identities=20%  Similarity=0.336  Sum_probs=213.0

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      .|.|+|+.|++|+..|.+.+|+..+                           ......++.|..+|.++.|+++ +.+++
T Consensus       103 ~WtPeGRRLltgs~SGEFtLWNg~~---------------------------fnFEtilQaHDs~Vr~m~ws~~-g~wmi  154 (464)
T KOG0284|consen  103 RWTPEGRRLLTGSQSGEFTLWNGTS---------------------------FNFETILQAHDSPVRTMKWSHN-GTWMI  154 (464)
T ss_pred             EEcCCCceeEeecccccEEEecCce---------------------------eeHHHHhhhhcccceeEEEccC-CCEEE
Confidence            3489999999999999999999853                           3344566789999999999999 77999


Q ss_pred             EEEcCCeEEEEECCCCceeeeeccc-ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293          140 SASADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  218 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  218 (358)
                      +|+.+|.|++|+..-. .++.++.| ...|++++|+|.+ ..|++++.||+|+|||....+....+.+|.-.|.+++|+|
T Consensus       155 SgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP  232 (464)
T KOG0284|consen  155 SGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP  232 (464)
T ss_pred             EcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC
Confidence            9999999999997644 45555555 4999999999987 8899999999999999998888777889999999999999


Q ss_pred             CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceee
Q 018293          219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  298 (358)
Q Consensus       219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  298 (358)
                      . ..++++++.|..|++||.+++         .++.++..|...|..+.|+|++ ++|++++.|..+++||+++.+  .+
T Consensus       233 ~-kgLiasgskDnlVKlWDprSg---------~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mk--El  299 (464)
T KOG0284|consen  233 T-KGLIASGSKDNLVKLWDPRSG---------SCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMK--EL  299 (464)
T ss_pred             c-cceeEEccCCceeEeecCCCc---------chhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhH--HH
Confidence            5 559999999999999999998         8899999999999999999999 999999999999999999665  57


Q ss_pred             EecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      +.+.+|...++++.|+|-...+|++|+.||.|..|.+...+.+.
T Consensus       300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~  343 (464)
T KOG0284|consen  300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG  343 (464)
T ss_pred             HHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc
Confidence            78889999999999999887799999999999999998544443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=8.2e-37  Score=228.21  Aligned_cols=280  Identities=23%  Similarity=0.369  Sum_probs=219.0

Q ss_pred             CcccCC-CcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293            1 MTINPN-DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI   79 (358)
Q Consensus         1 l~~~p~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v   79 (358)
                      ++++|. |++|++++.+.     .+.+|+...+.......+-+......+..++|       +|.|++||+|+.|.++.|
T Consensus        20 ~awhp~~g~ilAscg~Dk-----~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw-------sp~g~~La~aSFD~t~~I   87 (312)
T KOG0645|consen   20 VAWHPGKGVILASCGTDK-----AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW-------SPHGRYLASASFDATVVI   87 (312)
T ss_pred             EEeccCCceEEEeecCCc-----eEEEEecCCCCcEEEEEeccccchheeeeeee-------cCCCcEEEEeeccceEEE
Confidence            467888 88888887776     77888877432222221111122222334545       899999999999999999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC---c
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---K  156 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~  156 (358)
                      |.-..                         ........+.||+..|.|++|+++ +++||+++.|+.|.||.+..+   +
T Consensus        88 w~k~~-------------------------~efecv~~lEGHEnEVK~Vaws~s-G~~LATCSRDKSVWiWe~deddEfe  141 (312)
T KOG0645|consen   88 WKKED-------------------------GEFECVATLEGHENEVKCVAWSAS-GNYLATCSRDKSVWIWEIDEDDEFE  141 (312)
T ss_pred             eecCC-------------------------CceeEEeeeeccccceeEEEEcCC-CCEEEEeeCCCeEEEEEecCCCcEE
Confidence            98653                         234556688899999999999999 679999999999999998744   6


Q ss_pred             eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC---CCccceeeecCCeeeEEEcCCCCCeEEEEecCCeE
Q 018293          157 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS---THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI  233 (358)
Q Consensus       157 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i  233 (358)
                      +...++.|...|..+.|+|.. .+|++++.|++|++|+-...   .+...+..+...|.+++|++.+ ..+++++.|+++
T Consensus       142 c~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv  219 (312)
T KOG0645|consen  142 CIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTV  219 (312)
T ss_pred             EEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcce
Confidence            788899999999999999988 89999999999999987732   2345566788899999999965 689999999999


Q ss_pred             EEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC--c---eeeEecCCCCcee
Q 018293          234 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--P---SCIASRNPKAGAV  308 (358)
Q Consensus       234 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~---~~~~~~~~~~~~v  308 (358)
                      +||-....             ....|..++..+.|. +  ..|++++.|+.|++|......  +   ........|...|
T Consensus       220 ~Iw~~~~~-------------~~~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dV  283 (312)
T KOG0645|consen  220 SIWRLYTD-------------LSGMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDV  283 (312)
T ss_pred             EeeeeccC-------------cchhcccceEeeeec-c--cceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccccc
Confidence            99987643             113467889999999 4  489999999999999876531  1   1112345688899


Q ss_pred             EEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          309 FSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       309 ~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      ++++|.|....+|++|+.||.|++|.+.
T Consensus       284 NsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  284 NSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ceEEEcCCCCCceeecCCCceEEEEEec
Confidence            9999999655579999999999999874

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=6.1e-38  Score=243.01  Aligned_cols=248  Identities=25%  Similarity=0.430  Sum_probs=223.3

Q ss_pred             ceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec
Q 018293           51 CMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW  130 (358)
Q Consensus        51 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  130 (358)
                      .+.|+. ++++.|.+++|++|+.|++|+|||+.+++                           +...+.||...|..+++
T Consensus       150 HlgWVr-~vavdP~n~wf~tgs~DrtikIwDlatg~---------------------------LkltltGhi~~vr~vav  201 (460)
T KOG0285|consen  150 HLGWVR-SVAVDPGNEWFATGSADRTIKIWDLATGQ---------------------------LKLTLTGHIETVRGVAV  201 (460)
T ss_pred             ccceEE-EEeeCCCceeEEecCCCceeEEEEcccCe---------------------------EEEeecchhheeeeeee
Confidence            345665 57789999999999999999999997643                           44467789999999999


Q ss_pred             CCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCC
Q 018293          131 NKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD  210 (358)
Q Consensus       131 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  210 (358)
                      |+. ..++++++.|+.|+.||++..+.++.+.+|-+.|.+++.+|.- ..|++|+.|.++++||+++...+..+.+|..+
T Consensus       202 S~r-HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~  279 (460)
T KOG0285|consen  202 SKR-HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP  279 (460)
T ss_pred             ccc-CceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCc
Confidence            998 6799999999999999999999999999999999999999998 89999999999999999999999888899999


Q ss_pred             eeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEec
Q 018293          211 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  290 (358)
Q Consensus       211 i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~  290 (358)
                      |..+.+.|.++ .+++|+.|++|++||++.+         +....+..|...+.+++.+|.. ..+++++.| .|+-|++
T Consensus       280 V~~V~~~~~dp-qvit~S~D~tvrlWDl~ag---------kt~~tlt~hkksvral~lhP~e-~~fASas~d-nik~w~~  347 (460)
T KOG0285|consen  280 VASVMCQPTDP-QVITGSHDSTVRLWDLRAG---------KTMITLTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKL  347 (460)
T ss_pred             ceeEEeecCCC-ceEEecCCceEEEeeeccC---------ceeEeeecccceeeEEecCCch-hhhhccCCc-cceeccC
Confidence            99999999665 7999999999999999998         7788899999999999999976 788888876 5999999


Q ss_pred             CCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          291 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       291 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      ..+.  .+..+.+|..-|++++...|+  ++++|+++|.+.+||.+++...++.
T Consensus       348 p~g~--f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~  397 (460)
T KOG0285|consen  348 PEGE--FLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRG  397 (460)
T ss_pred             Cccc--hhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccc
Confidence            9988  455688999999999999998  5888999999999999998876543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.2e-37  Score=233.56  Aligned_cols=251  Identities=21%  Similarity=0.338  Sum_probs=214.5

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      +|+|+|.+||+|+.|..|.+|++....                          .....+.+|.++|..+.|.++ ++.++
T Consensus        54 ~F~P~gs~~aSgG~Dr~I~LWnv~gdc--------------------------eN~~~lkgHsgAVM~l~~~~d-~s~i~  106 (338)
T KOG0265|consen   54 KFHPDGSCFASGGSDRAIVLWNVYGDC--------------------------ENFWVLKGHSGAVMELHGMRD-GSHIL  106 (338)
T ss_pred             EECCCCCeEeecCCcceEEEEeccccc--------------------------cceeeeccccceeEeeeeccC-CCEEE
Confidence            459999999999999999999975321                          122345589999999999999 67999


Q ss_pred             EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293          140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  219 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  219 (358)
                      +++.|.+|+.||+++|+.++.+++|..-++++.-+.-|..++.+++.|+++++||+++..... .......++++.|..+
T Consensus       107 S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~-t~~~kyqltAv~f~d~  185 (338)
T KOG0265|consen  107 SCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK-TFENKYQLTAVGFKDT  185 (338)
T ss_pred             EecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh-ccccceeEEEEEeccc
Confidence            999999999999999999999999999999999777787889999999999999999887766 4556778999999985


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc--ee
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SC  297 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~  297 (358)
                      + ..+.+|+-|+.|++||++..         ...+.+.+|..+|+.+..+|+| .++++-+.|.++++||++...+  .+
T Consensus       186 s-~qv~sggIdn~ikvWd~r~~---------d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~  254 (338)
T KOG0265|consen  186 S-DQVISGGIDNDIKVWDLRKN---------DGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRC  254 (338)
T ss_pred             c-cceeeccccCceeeeccccC---------cceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCce
Confidence            4 47999999999999999987         8899999999999999999998 8999999999999999986432  23


Q ss_pred             eEecCCC----CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcC
Q 018293          298 IASRNPK----AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  350 (358)
Q Consensus       298 ~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  350 (358)
                      +..+.+|    ......++|+|++.+ +.+|+.|..+++||......+...-++...
T Consensus       255 v~if~g~~hnfeknlL~cswsp~~~~-i~ags~dr~vyvwd~~~r~~lyklpGh~gs  310 (338)
T KOG0265|consen  255 VKIFQGHIHNFEKNLLKCSWSPNGTK-ITAGSADRFVYVWDTTSRRILYKLPGHYGS  310 (338)
T ss_pred             EEEeecchhhhhhhcceeeccCCCCc-cccccccceEEEeecccccEEEEcCCccee
Confidence            4455544    234567899999996 888999999999999887877777776654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.4e-38  Score=265.86  Aligned_cols=196  Identities=23%  Similarity=0.360  Sum_probs=182.3

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      ..+|+|+.++|+++++|+++|+|.+.+...                           ...+.||..+|+++.|+|. +.+
T Consensus       456 g~sFsPd~rfLlScSED~svRLWsl~t~s~---------------------------~V~y~GH~~PVwdV~F~P~-GyY  507 (707)
T KOG0263|consen  456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSC---------------------------LVIYKGHLAPVWDVQFAPR-GYY  507 (707)
T ss_pred             eeeecccccceeeccCCcceeeeeccccee---------------------------EEEecCCCcceeeEEecCC-ceE
Confidence            446799999999999999999999986433                           3355689999999999999 789


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  217 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  217 (358)
                      +||++.|++.++|.....++++.+.+|-+.|.|+.|+|+. .++++|+.|.++++||+.++..++...+|.++|.+++|+
T Consensus       508 Fatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~S  586 (707)
T KOG0263|consen  508 FATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFS  586 (707)
T ss_pred             EEecCCCceeeeeecccCCchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEc
Confidence            9999999999999999999999999999999999999999 999999999999999999999999899999999999999


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  293 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~  293 (358)
                      | .+.++++|+.||.|.+||+.++         ..+..+.+|.+.|.++.|+.+| ..|++|+.|.+|++||+...
T Consensus       587 p-~Gr~LaSg~ed~~I~iWDl~~~---------~~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  587 P-CGRYLASGDEDGLIKIWDLANG---------SLVKQLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             C-CCceEeecccCCcEEEEEcCCC---------cchhhhhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhh
Confidence            9 5669999999999999999998         7888999999999999999999 99999999999999998653

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.1e-36  Score=230.67  Aligned_cols=278  Identities=18%  Similarity=0.274  Sum_probs=232.7

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCC--CceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGD--PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE   78 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~   78 (358)
                      ++|+|+|..|++|+.+.     +|.+|+...+.+  ..+..|..     .++.+.|       .+|++.+++++.|.+|+
T Consensus        53 ~~F~P~gs~~aSgG~Dr-----~I~LWnv~gdceN~~~lkgHsg-----AVM~l~~-------~~d~s~i~S~gtDk~v~  115 (338)
T KOG0265|consen   53 IKFHPDGSCFASGGSDR-----AIVLWNVYGDCENFWVLKGHSG-----AVMELHG-------MRDGSHILSCGTDKTVR  115 (338)
T ss_pred             EEECCCCCeEeecCCcc-----eEEEEeccccccceeeeccccc-----eeEeeee-------ccCCCEEEEecCCceEE
Confidence            36999999999999998     889998554321  12222322     2335555       78999999999999999


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN  158 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  158 (358)
                      .||+.+++..+                           ..++|.+-|+++.-+.-|..++.+++.|+++++||+++...+
T Consensus       116 ~wD~~tG~~~r---------------------------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~  168 (338)
T KOG0265|consen  116 GWDAETGKRIR---------------------------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI  168 (338)
T ss_pred             EEecccceeee---------------------------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchh
Confidence            99998876654                           456799999999977777789999999999999999998888


Q ss_pred             eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293          159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  238 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~  238 (358)
                      +++. ...+++++.|..++ ..+.+|+-|+.|++||++.+.......+|..+|+.+..+|++ .++.+-+.|.++++||+
T Consensus       169 ~t~~-~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~  245 (338)
T KOG0265|consen  169 KTFE-NKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDV  245 (338)
T ss_pred             hccc-cceeEEEEEecccc-cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCC-CccccccccceEEEEEe
Confidence            8886 46789999999988 779999999999999999999988899999999999999965 48999999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEeecC----CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEc
Q 018293          239 RTAKSDPDSTSQQSSFTLHAHD----KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS  314 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  314 (358)
                      +......     +++..+.+|.    .....++|+|++ ..+.+|+.|..+++||.....  .+..+.+|.+.|+++.|+
T Consensus       246 rp~~p~~-----R~v~if~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~--~lyklpGh~gsvn~~~Fh  317 (338)
T KOG0265|consen  246 RPFAPSQ-----RCVKIFQGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRR--ILYKLPGHYGSVNEVDFH  317 (338)
T ss_pred             cccCCCC-----ceEEEeecchhhhhhhcceeeccCCC-CccccccccceEEEeeccccc--EEEEcCCcceeEEEeeec
Confidence            9764422     4466666653    335678999998 899999999999999998877  688899999999999999


Q ss_pred             CCCCeEEEEEccCCeEEEEE
Q 018293          315 EDSPFVLAIGGSKGKLEIWD  334 (358)
Q Consensus       315 ~~~~~~l~~~~~dg~i~vw~  334 (358)
                      |..+ ++.+++.|.+|++=+
T Consensus       318 p~e~-iils~~sdk~i~lge  336 (338)
T KOG0265|consen  318 PTEP-IILSCSSDKTIYLGE  336 (338)
T ss_pred             CCCc-EEEEeccCceeEeec
Confidence            9999 688899999998744

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7.3e-37  Score=264.97  Aligned_cols=278  Identities=21%  Similarity=0.335  Sum_probs=223.8

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCC--CCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGG--DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE   78 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~   78 (358)
                      +.|+|+|+.++.+..++     .+.+|+.....  .......|    ...+.++       +|+|+++++++|+.|++|+
T Consensus       165 ~~fs~~g~~l~~~~~~~-----~i~~~~~~~~~~~~~~~l~~h----~~~v~~~-------~fs~d~~~l~s~s~D~tir  228 (456)
T KOG0266|consen  165 VDFSPDGRALAAASSDG-----LIRIWKLEGIKSNLLRELSGH----TRGVSDV-------AFSPDGSYLLSGSDDKTLR  228 (456)
T ss_pred             EEEcCCCCeEEEccCCC-----cEEEeecccccchhhcccccc----ccceeee-------EECCCCcEEEEecCCceEE
Confidence            36899999988887776     55666653322  11111222    2222344       4599999999999999999


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN  158 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  158 (358)
                      |||+..                          .......+.+|...|++++|+|++ +++++|+.|++|++||++++++.
T Consensus       229 iwd~~~--------------------------~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~  281 (456)
T KOG0266|consen  229 IWDLKD--------------------------DGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECV  281 (456)
T ss_pred             EeeccC--------------------------CCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEE
Confidence            999932                          233445677999999999999995 89999999999999999999999


Q ss_pred             eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC--ccceeeecC--CeeeEEEcCCCCCeEEEEecCCeEE
Q 018293          159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH--SGFKWAVAA--DVESLAWDPHAEHSFVVSLEDGTIK  234 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~dg~i~  234 (358)
                      ..+.+|.+.|++++|++++ +++++++.|+.|++||+.++..  ......+..  .++++.|+|+ +.++++++.|+.++
T Consensus       282 ~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~-~~~ll~~~~d~~~~  359 (456)
T KOG0266|consen  282 RKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPN-GKYLLSASLDRTLK  359 (456)
T ss_pred             EeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCC-CcEEEEecCCCeEE
Confidence            9999999999999999999 8999999999999999999883  333333333  5999999995 56999999999999


Q ss_pred             EEEcccCCCCCCCCCCCccEEEeecCCc---eeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCC-CceeEE
Q 018293          235 GFDIRTAKSDPDSTSQQSSFTLHAHDKA---VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-AGAVFS  310 (358)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~~~~~~~~~---i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~v~~  310 (358)
                      +||++..         .......+|...   +.+...++.+ .++++|+.|+.|++||+.++.  .+..+.+| ...+..
T Consensus       360 ~w~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~--~~~~l~~h~~~~~~~  427 (456)
T KOG0266|consen  360 LWDLRSG---------KSVGTYTGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGG--ILQRLEGHSKAAVSD  427 (456)
T ss_pred             EEEccCC---------cceeeecccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccc--hhhhhcCCCCCceec
Confidence            9999987         667777777664   4444556666 899999999999999999876  46667788 889999


Q ss_pred             EEEcCCCCeEEEEEc--cCCeEEEEEcc
Q 018293          311 VAFSEDSPFVLAIGG--SKGKLEIWDTL  336 (358)
Q Consensus       311 ~~~~~~~~~~l~~~~--~dg~i~vw~~~  336 (358)
                      +.++|... ++++++  .|+.+++|...
T Consensus       428 ~~~~~~~~-~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  428 LSSHPTEN-LIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             cccCCCcC-eeeecCcCCCceEEEecCC
Confidence            99999998 588887  78999999754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.9e-36  Score=254.39  Aligned_cols=283  Identities=23%  Similarity=0.390  Sum_probs=230.8

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecC-CcccceeeecCCccccCCCceEEecCCC-CeEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIP-AFPLCMAWLDCPLKDREKGNFMAVGSME-PAIEI   79 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g~i~v   79 (358)
                      .|+|.-++|++|-+.+     ...+|+...-     ...|...+. ..+..+.|       +..|+.||.|+.. |.+-|
T Consensus       272 ~fH~~t~~lvvgFssG-----~f~LyelP~f-----~lih~LSis~~~I~t~~~-------N~tGDWiA~g~~klgQLlV  334 (893)
T KOG0291|consen  272 AFHKGTNLLVVGFSSG-----EFGLYELPDF-----NLIHSLSISDQKILTVSF-------NSTGDWIAFGCSKLGQLLV  334 (893)
T ss_pred             eccCCceEEEEEecCC-----eeEEEecCCc-----eEEEEeecccceeeEEEe-------cccCCEEEEcCCccceEEE
Confidence            5788899999998877     6667776542     223333333 34444444       7889999998865 89999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  159 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  159 (358)
                      |++.+..                           .+...++|...+++++++|| ++++|+|+.||.|+|||...+-|..
T Consensus       335 weWqsEs---------------------------YVlKQQgH~~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~~SgfC~v  386 (893)
T KOG0291|consen  335 WEWQSES---------------------------YVLKQQGHSDRITSLAYSPD-GQLIATGAEDGKVKVWNTQSGFCFV  386 (893)
T ss_pred             EEeeccc---------------------------eeeeccccccceeeEEECCC-CcEEEeccCCCcEEEEeccCceEEE
Confidence            9997533                           33456789999999999999 7799999999999999999999999


Q ss_pred             eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-eecCCeeeEEEcCCCCCeEEEEecCC-eEEEEE
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDG-TIKGFD  237 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~dg-~i~i~d  237 (358)
                      +|..|+..|+.+.|+..+ +.+++++.||+|+.||+......+... ..+....|++.+|.+ .++++|+.|. .|.+|+
T Consensus       387 TFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG-elV~AG~~d~F~IfvWS  464 (893)
T KOG0291|consen  387 TFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG-ELVCAGAQDSFEIFVWS  464 (893)
T ss_pred             EeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC-CEEEeeccceEEEEEEE
Confidence            999999999999999999 899999999999999998776654332 234457789999954 4777777776 599999


Q ss_pred             cccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293          238 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS  317 (358)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  317 (358)
                      +.++         +.+..+.+|.++|.+++|+|.+ ..|++++.|.+|++||+-.... .+.++ .+...+..++|+|+|
T Consensus       465 ~qTG---------qllDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~-~vEtl-~i~sdvl~vsfrPdG  532 (893)
T KOG0291|consen  465 VQTG---------QLLDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSG-TVETL-EIRSDVLAVSFRPDG  532 (893)
T ss_pred             eecC---------eeeehhcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCc-eeeeE-eeccceeEEEEcCCC
Confidence            9998         8889999999999999999998 8999999999999999976531 22233 345679999999999


Q ss_pred             CeEEEEEccCCeEEEEEccCCCccccc
Q 018293          318 PFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       318 ~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      +. ++++..||.|.+||...+.++...
T Consensus       533 ~e-laVaTldgqItf~d~~~~~q~~~I  558 (893)
T KOG0291|consen  533 KE-LAVATLDGQITFFDIKEAVQVGSI  558 (893)
T ss_pred             Ce-EEEEEecceEEEEEhhhceeeccc
Confidence            95 899999999999999988776443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.6e-36  Score=240.91  Aligned_cols=275  Identities=20%  Similarity=0.354  Sum_probs=234.4

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      |+.+-+|++|++|..++     .+.+|+.... ....+..|    ..+++.++|       +.+|+||++++.||++.+|
T Consensus       241 L~Wn~~G~~LatG~~~G-----~~riw~~~G~-l~~tl~~H----kgPI~slKW-------nk~G~yilS~~vD~ttilw  303 (524)
T KOG0273|consen  241 LDWNNDGTLLATGSEDG-----EARIWNKDGN-LISTLGQH----KGPIFSLKW-------NKKGTYILSGGVDGTTILW  303 (524)
T ss_pred             EEecCCCCeEEEeecCc-----EEEEEecCch-hhhhhhcc----CCceEEEEE-------cCCCCEEEeccCCccEEEE
Confidence            45678899999998887     8888887663 33344444    344567777       8899999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      |..++...+.+.                           -|..+-..+.|-.+  ..+++++.|+.|+|+.+....++.+
T Consensus       304 d~~~g~~~q~f~---------------------------~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t  354 (524)
T KOG0273|consen  304 DAHTGTVKQQFE---------------------------FHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKT  354 (524)
T ss_pred             eccCceEEEeee---------------------------eccCCccceEEecC--ceEeecCCCceEEEEEecCCCccee
Confidence            997765554332                           36666678889766  3799999999999999999999999


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC--------CCeEEEEecCCe
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA--------EHSFVVSLEDGT  232 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~dg~  232 (358)
                      +.+|.++|.++.|+|.+ .+|++++.|+++++|..........+..|...|..+.|+|.+        +..+++++.|++
T Consensus       355 ~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst  433 (524)
T KOG0273|consen  355 FIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST  433 (524)
T ss_pred             eecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe
Confidence            99999999999999999 999999999999999998888877788899999999998864        357899999999


Q ss_pred             EEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEE
Q 018293          233 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  312 (358)
Q Consensus       233 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  312 (358)
                      |++||+..+         .+++.+..|+.+|.+++|+|++ .++++|+.||.|.+|+.++++  .+....+ .+.|..++
T Consensus       434 V~lwdv~~g---------v~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~--l~~s~~~-~~~Ifel~  500 (524)
T KOG0273|consen  434 VKLWDVESG---------VPIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGK--LVKSYQG-TGGIFELC  500 (524)
T ss_pred             EEEEEccCC---------ceeEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchh--eeEeecC-CCeEEEEE
Confidence            999999998         8899999999999999999999 999999999999999999998  3444443 46699999


Q ss_pred             EcCCCCeEEEEEccCCeEEEEEcc
Q 018293          313 FSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       313 ~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      |+.+|.+ +..+-.||.+++.|++
T Consensus       501 Wn~~G~k-l~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  501 WNAAGDK-LGACASDGSVCVLDLR  523 (524)
T ss_pred             EcCCCCE-EEEEecCCCceEEEec
Confidence            9999985 6667789999999875

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.6e-37  Score=239.03  Aligned_cols=246  Identities=21%  Similarity=0.290  Sum_probs=222.3

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      -|+|+-..+++++.|++|++||..+++..                           ..++||.+.|..|+|+.. +.+++
T Consensus       115 ~~hp~~~~v~~as~d~tikv~D~~tg~~e---------------------------~~LrGHt~sv~di~~~a~-Gk~l~  166 (406)
T KOG0295|consen  115 IFHPSEALVVSASEDATIKVFDTETGELE---------------------------RSLRGHTDSVFDISFDAS-GKYLA  166 (406)
T ss_pred             eeccCceEEEEecCCceEEEEEccchhhh---------------------------hhhhccccceeEEEEecC-ccEEE
Confidence            36899999999999999999999876553                           367799999999999998 67999


Q ss_pred             EEEcCCeEEEEECCC-CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293          140 SASADKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  218 (358)
Q Consensus       140 s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  218 (358)
                      +++.|-.+.+||..+ .++++.+.+|...|.+++|-|.| .++++++.|.+|+.|++.++.++....+|...+..++.+.
T Consensus       167 tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~  245 (406)
T KOG0295|consen  167 TCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ  245 (406)
T ss_pred             ecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecC
Confidence            999999999999987 47788888999999999999999 8999999999999999999999998889999999999998


Q ss_pred             CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC--------------CCcEEEEEeCCCc
Q 018293          219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL--------------VPNLLATGSTDKM  284 (358)
Q Consensus       219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--------------~~~~l~~~~~dg~  284 (358)
                      | +.++++++.|.++++|-+.+.         .+...+..|..+|-+++|.|.              +..++.+++.|++
T Consensus       246 D-Gti~As~s~dqtl~vW~~~t~---------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt  315 (406)
T KOG0295|consen  246 D-GTIIASCSNDQTLRVWVVATK---------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT  315 (406)
T ss_pred             C-eeEEEecCCCceEEEEEeccc---------hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce
Confidence            5 569999999999999999987         677788899999999999873              2358999999999


Q ss_pred             EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293          285 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       285 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                      |++||+.++.  ++.++.+|.+.|..++|+|.|+| |+++.+|+++++||+++++++.....+
T Consensus       316 Ik~wdv~tg~--cL~tL~ghdnwVr~~af~p~Gky-i~ScaDDktlrvwdl~~~~cmk~~~ah  375 (406)
T KOG0295|consen  316 IKIWDVSTGM--CLFTLVGHDNWVRGVAFSPGGKY-ILSCADDKTLRVWDLKNLQCMKTLEAH  375 (406)
T ss_pred             EEEEeccCCe--EEEEEecccceeeeeEEcCCCeE-EEEEecCCcEEEEEeccceeeeccCCC
Confidence            9999999997  89999999999999999999997 888999999999999999988765433

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.8e-35  Score=238.18  Aligned_cols=312  Identities=16%  Similarity=0.266  Sum_probs=239.7

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      .|+|+|..++++.+++     ++++||-..++...-+. .......-++.+.|       +||++.++|++.|.+++|||
T Consensus       197 RysPDG~~Fat~gsDg-----ki~iyDGktge~vg~l~-~~~aHkGsIfalsW-------sPDs~~~~T~SaDkt~KIWd  263 (603)
T KOG0318|consen  197 RYSPDGSRFATAGSDG-----KIYIYDGKTGEKVGELE-DSDAHKGSIFALSW-------SPDSTQFLTVSADKTIKIWD  263 (603)
T ss_pred             EECCCCCeEEEecCCc-----cEEEEcCCCccEEEEec-CCCCccccEEEEEE-------CCCCceEEEecCCceEEEEE
Confidence            5899999999999999     99999988863222222 13344555667777       89999999999999999999


Q ss_pred             cccccCcCceeecCCccccccc--c--------------cccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCC
Q 018293           82 LDVIDEVQPHVILGGIDEEKKK--K--------------KSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK  145 (358)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~--~--------------~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg  145 (358)
                      +.+...+.....-...++....  |              .-...........+.||...|+++..+|+ +.+|++|+.||
T Consensus       264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d-~~~i~SgsyDG  342 (603)
T KOG0318|consen  264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD-GKTIYSGSYDG  342 (603)
T ss_pred             eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC-CCEEEeeccCc
Confidence            9988766554443332222110  0              00011123367788899999999999999 58999999999


Q ss_pred             eEEEEECCCCceeeee-cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc---------------------
Q 018293          146 QVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---------------------  203 (358)
Q Consensus       146 ~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---------------------  203 (358)
                      .|.-|+..++..-+.. +.|...|.+++-+..+  .+++.+.|.++++.++........                     
T Consensus       343 ~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~a  420 (603)
T KOG0318|consen  343 HINSWDSGSGTSDRLAGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTA  420 (603)
T ss_pred             eEEEEecCCccccccccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEE
Confidence            9999999988765443 6799999999988755  488899999999997743211000                     


Q ss_pred             ----------ee--------eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeE
Q 018293          204 ----------KW--------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT  265 (358)
Q Consensus       204 ----------~~--------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~  265 (358)
                                +.        .......+++++|+ +..+++|+.||.|++|.+.....       ........|.++|++
T Consensus       421 vv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~-~~~vaVGG~Dgkvhvysl~g~~l-------~ee~~~~~h~a~iT~  492 (603)
T KOG0318|consen  421 VVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD-GSEVAVGGQDGKVHVYSLSGDEL-------KEEAKLLEHRAAITD  492 (603)
T ss_pred             EEEecCcEEEEecCCcceeeccccccceEEEcCC-CCEEEEecccceEEEEEecCCcc-------cceeeeecccCCceE
Confidence                      00        01123567899994 56999999999999999987632       344567789999999


Q ss_pred             EEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          266 ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       266 i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      ++++|++ .+|++|...+.+.+||+.+.+. ......-|...|.+++|+|+.. ++|+|+.|-.|.||++.....
T Consensus       493 vaySpd~-~yla~~Da~rkvv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP~~  564 (603)
T KOG0318|consen  493 VAYSPDG-AYLAAGDASRKVVLYDVASREV-KTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKPAK  564 (603)
T ss_pred             EEECCCC-cEEEEeccCCcEEEEEcccCce-ecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccChhh
Confidence            9999999 9999999999999999999885 4444556899999999999999 799999999999999986543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=6.4e-35  Score=271.04  Aligned_cols=288  Identities=18%  Similarity=0.225  Sum_probs=219.5

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCC----CCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCe
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDG----GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA   76 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~   76 (358)
                      ++|+|+++++++|+.++     .+.+|+....    ........ .........++.|.+      +++.+|++++.||+
T Consensus       489 i~fs~dg~~latgg~D~-----~I~iwd~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~~------~~~~~las~~~Dg~  556 (793)
T PLN00181        489 IGFDRDGEFFATAGVNK-----KIKIFECESIIKDGRDIHYPVV-ELASRSKLSGICWNS------YIKSQVASSNFEGV  556 (793)
T ss_pred             EEECCCCCEEEEEeCCC-----EEEEEECCcccccccccccceE-EecccCceeeEEecc------CCCCEEEEEeCCCe
Confidence            47899999999998776     6777775321    00000000 001122334566632      35789999999999


Q ss_pred             EEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc
Q 018293           77 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK  156 (358)
Q Consensus        77 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  156 (358)
                      |++||+.+++.                           ...+.+|...|++++|+|.++.+|++|+.||+|++||+.++.
T Consensus       557 v~lWd~~~~~~---------------------------~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~  609 (793)
T PLN00181        557 VQVWDVARSQL---------------------------VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV  609 (793)
T ss_pred             EEEEECCCCeE---------------------------EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence            99999975332                           234567999999999998547799999999999999999998


Q ss_pred             eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC-ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEE
Q 018293          157 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG  235 (358)
Q Consensus       157 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i  235 (358)
                      .+..+..+ ..+.++.|++..+.++++|+.||.|++||++.... ......|...|.++.|.+  +..+++++.|+.|++
T Consensus       610 ~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~--~~~lvs~s~D~~iki  686 (793)
T PLN00181        610 SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD--SSTLVSSSTDNTLKL  686 (793)
T ss_pred             EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC--CCEEEEEECCCEEEE
Confidence            88888754 67999999665448999999999999999987653 344557888999999974  458999999999999


Q ss_pred             EEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe-----------cCCC
Q 018293          236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-----------RNPK  304 (358)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------~~~~  304 (358)
                      ||++.....   ....++..+.+|...+.+++|+|++ .+|++|+.|+.|++|+.....+.....           ...+
T Consensus       687 Wd~~~~~~~---~~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~  762 (793)
T PLN00181        687 WDLSMSISG---INETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA  762 (793)
T ss_pred             EeCCCCccc---cCCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCC
Confidence            999854210   0124567888999999999999998 899999999999999987654322221           1334


Q ss_pred             CceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          305 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       305 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      ...|.+++|+|++. .|++|+.||.|+||++
T Consensus       763 ~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~  792 (793)
T PLN00181        763 SQFISSVCWRGQSS-TLVAANSTGNIKILEM  792 (793)
T ss_pred             CcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence            56799999999999 5889999999999997

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=7.6e-35  Score=240.85  Aligned_cols=275  Identities=30%  Similarity=0.505  Sum_probs=223.4

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++++|+++.++++..++     .+++|+............|.    ....++.|       +++++++++++.||.|++|
T Consensus        15 ~~~~~~~~~l~~~~~~g-----~i~i~~~~~~~~~~~~~~~~----~~i~~~~~-------~~~~~~l~~~~~~~~i~i~   78 (289)
T cd00200          15 VAFSPDGKLLATGSGDG-----TIKVWDLETGELLRTLKGHT----GPVRDVAA-------SADGTYLASGSSDKTIRLW   78 (289)
T ss_pred             EEEcCCCCEEEEeecCc-----EEEEEEeeCCCcEEEEecCC----cceeEEEE-------CCCCCEEEEEcCCCeEEEE
Confidence            46899999999997766     77777766542222222221    11224444       7888999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      ++.+.+..                           ..+..|...|.++.|+++ +.++++++.|+.+.+||+.+++....
T Consensus        79 ~~~~~~~~---------------------------~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~  130 (289)
T cd00200          79 DLETGECV---------------------------RTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTT  130 (289)
T ss_pred             EcCcccce---------------------------EEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEE
Confidence            99753222                           233468889999999998 67888888899999999998988888


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      +..|...+.+++|+|++ .++++++.++.+++||++..+.......+...+.++.|+|++ ..+++++.++.+++||++.
T Consensus       131 ~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~  208 (289)
T cd00200         131 LRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLST  208 (289)
T ss_pred             eccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCC
Confidence            88899999999999997 788888889999999999877776666777799999999965 4777888899999999987


Q ss_pred             CCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeE
Q 018293          241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFV  320 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  320 (358)
                      .         .....+..|...+.++.|+|++ .++++++.||.|++||+.+++  ....+..|...+.+++|+|+++ .
T Consensus       209 ~---------~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~  275 (289)
T cd00200         209 G---------KCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGE--CVQTLSGHTNSVTSLAWSPDGK-R  275 (289)
T ss_pred             C---------ceecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCce--eEEEccccCCcEEEEEECCCCC-E
Confidence            6         5566666788899999999986 888888889999999999876  4555668888999999999998 5


Q ss_pred             EEEEccCCeEEEEE
Q 018293          321 LAIGGSKGKLEIWD  334 (358)
Q Consensus       321 l~~~~~dg~i~vw~  334 (358)
                      +++++.||.|++|+
T Consensus       276 l~~~~~d~~i~iw~  289 (289)
T cd00200         276 LASGSADGTIRIWD  289 (289)
T ss_pred             EEEecCCCeEEecC
Confidence            88999999999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.5e-36  Score=253.32  Aligned_cols=284  Identities=21%  Similarity=0.336  Sum_probs=237.3

Q ss_pred             cCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcc
Q 018293            4 NPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD   83 (358)
Q Consensus         4 ~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~   83 (358)
                      .|.++.+++|.+..     ++.+|+... ..-.++..|+..+    +.+.       ...+|.+|++|+.|.++++|.++
T Consensus       333 G~e~~~laVATNs~-----~lr~y~~~~-~~c~ii~GH~e~v----lSL~-------~~~~g~llat~sKD~svilWr~~  395 (775)
T KOG0319|consen  333 GPEESHLAVATNSP-----ELRLYTLPT-SYCQIIPGHTEAV----LSLD-------VWSSGDLLATGSKDKSVILWRLN  395 (775)
T ss_pred             CCccceEEEEeCCC-----ceEEEecCC-CceEEEeCchhhe----eeee-------ecccCcEEEEecCCceEEEEEec
Confidence            58889999998886     666776554 2334555554333    2332       12567899999999999999984


Q ss_pred             cccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce------
Q 018293           84 VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC------  157 (358)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~------  157 (358)
                      ....                       +.-+.....+|++.|.+++++..+..+|++++.|+++++|++...+.      
T Consensus       396 ~~~~-----------------------~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~  452 (775)
T KOG0319|consen  396 NNCS-----------------------KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIV  452 (775)
T ss_pred             CCcc-----------------------hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccce
Confidence            3221                       23334456689999999999988888999999999999999976221      


Q ss_pred             ---eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEE
Q 018293          158 ---NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK  234 (358)
Q Consensus       158 ---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~  234 (358)
                         ..+...|...|++++.+|+. .++++|+.|.+.++|++........+.+|...+.++.|+|. .+.+++++.|++|+
T Consensus       453 ~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~-dq~laT~SgD~TvK  530 (775)
T KOG0319|consen  453 LTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN-DQLLATCSGDKTVK  530 (775)
T ss_pred             ehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc-cceeEeccCCceEE
Confidence               11335799999999999998 99999999999999999988877888899999999999995 56999999999999


Q ss_pred             EEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEc
Q 018293          235 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS  314 (358)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  314 (358)
                      ||.+.+.         .++.++.+|...|..+.|-.++ ..|++++.||.+++|++.+++  |...+..|...|++++.+
T Consensus       531 IW~is~f---------SClkT~eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~e--C~~tlD~H~DrvWaL~~~  598 (775)
T KOG0319|consen  531 IWSISTF---------SCLKTFEGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNE--CEMTLDAHNDRVWALSVS  598 (775)
T ss_pred             EEEeccc---------eeeeeecCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchh--hhhhhhhccceeEEEeec
Confidence            9999997         8999999999999999999988 899999999999999999998  888999999999999999


Q ss_pred             CCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          315 EDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       315 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      +... ++++|+.||.|.+|.=.+.+...
T Consensus       599 ~~~~-~~~tgg~Dg~i~~wkD~Te~~~~  625 (775)
T KOG0319|consen  599 PLLD-MFVTGGGDGRIIFWKDVTEEEQN  625 (775)
T ss_pred             Cccc-eeEecCCCeEEEEeecCcHHHHH
Confidence            9999 69999999999999766554433

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=1.4e-35  Score=236.68  Aligned_cols=265  Identities=22%  Similarity=0.361  Sum_probs=223.1

Q ss_pred             eeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCC
Q 018293           42 HIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH  121 (358)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  121 (358)
                      ....+.-+..++++|      .+..++|+++..+.|+|||..........                 .....+...+.+|
T Consensus       120 ~i~h~gEVnRaRymP------Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-----------------~~~~~Pdl~L~gH  176 (422)
T KOG0264|consen  120 KINHDGEVNRARYMP------QNPNIVATKTSSGDVYVFDYTKHPSKPKA-----------------SGECRPDLRLKGH  176 (422)
T ss_pred             eccCCccchhhhhCC------CCCcEEEecCCCCCEEEEEeccCCCcccc-----------------cccCCCceEEEee
Confidence            344444455666665      36678899999999999999754332210                 0134556678899


Q ss_pred             cccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc-------eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEE
Q 018293          122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  194 (358)
Q Consensus       122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  194 (358)
                      ++.-++++|++...-.|++++.|++|++||+....       +...+.+|...|..++|++....+|++++.|+.+.|||
T Consensus       177 ~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD  256 (422)
T KOG0264|consen  177 EKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWD  256 (422)
T ss_pred             cccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEE
Confidence            99899999999877799999999999999997442       34567899999999999998889999999999999999


Q ss_pred             ccc--CCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293          195 ARI--STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  272 (358)
Q Consensus       195 ~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  272 (358)
                      +|+  .+.......|.+++.|++|+|.++.+||+|+.|++|++||+|+.        ..++..+.+|...|.++.|+|..
T Consensus       257 ~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL--------~~~lh~~e~H~dev~~V~WSPh~  328 (422)
T KOG0264|consen  257 TRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL--------NKPLHTFEGHEDEVFQVEWSPHN  328 (422)
T ss_pred             cCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc--------ccCceeccCCCcceEEEEeCCCC
Confidence            995  44445566789999999999999999999999999999999998        47899999999999999999998


Q ss_pred             CcEEEEEeCCCcEEEEecCC------------CCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          273 PNLLATGSTDKMVKLWDLSN------------NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       273 ~~~l~~~~~dg~i~i~d~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ...|++++.|+.+.|||+..            +.+..++...+|...|..+.|+|+..+++++.+.|+.+.||++..
T Consensus       329 etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  329 ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            89999999999999999864            234567888899999999999999999999999999999999863

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-35  Score=245.11  Aligned_cols=281  Identities=20%  Similarity=0.301  Sum_probs=229.5

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|+|..+.++++...+     .+.+|+..+....+-+.-.+.++    ...++       =+.-+.+++|+.|..|+||
T Consensus        19 Vd~HPtePw~la~LynG-----~V~IWnyetqtmVksfeV~~~Pv----Ra~kf-------iaRknWiv~GsDD~~IrVf   82 (794)
T KOG0276|consen   19 VDFHPTEPWILAALYNG-----DVQIWNYETQTMVKSFEVSEVPV----RAAKF-------IARKNWIVTGSDDMQIRVF   82 (794)
T ss_pred             eecCCCCceEEEeeecC-----eeEEEecccceeeeeeeecccch----hhhee-------eeccceEEEecCCceEEEE
Confidence            57999999999999887     66666666542222222222222    12333       3567899999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC-ceee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-KCNL  159 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~  159 (358)
                      +.++++.+.                           .+..|.+-|.|++.+|. ..++++++.|-+|++||.+.. .+.+
T Consensus        83 nynt~ekV~---------------------------~FeAH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we~~wa~~q  134 (794)
T KOG0276|consen   83 NYNTGEKVK---------------------------TFEAHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWENEWACEQ  134 (794)
T ss_pred             ecccceeeE---------------------------EeeccccceeeeeecCC-CCeEEecCCccEEEEeeccCceeeee
Confidence            998765544                           56789999999999999 669999999999999999865 7889


Q ss_pred             eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC-CCeEEEEecCCeEEEEEc
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA-EHSFVVSLEDGTIKGFDI  238 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~dg~i~i~d~  238 (358)
                      ++.+|...|.+++|+|.+.+.+++++-|++|++|.+....+...+.+|...|+|+.+-+-+ ..++++|++|..+++||.
T Consensus       135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDy  214 (794)
T KOG0276|consen  135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDY  214 (794)
T ss_pred             EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeec
Confidence            9999999999999999998999999999999999999998888888999999999998743 358999999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCC
Q 018293          239 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP  318 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  318 (358)
                      .+.         .++.++.+|...|..+.|+|.- .++++|++||+++||+..+-+..  ..+.-.-+.+++++-.+.++
T Consensus       215 Qtk---------~CV~TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~lE--~tLn~gleRvW~I~~~k~~~  282 (794)
T KOG0276|consen  215 QTK---------SCVQTLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYKLE--KTLNYGLERVWCIAAHKGDG  282 (794)
T ss_pred             chH---------HHHHHhhcccccceEEEecCCC-cEEEEecCCccEEEecCcceehh--hhhhcCCceEEEEeecCCCC
Confidence            997         8999999999999999999987 79999999999999999887643  33333457899999888777


Q ss_pred             eEEEEEccCCeEEEEEccCCC
Q 018293          319 FVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       319 ~~l~~~~~dg~i~vw~~~~~~  339 (358)
                       .++.|..+|.|. ..+..++
T Consensus       283 -~i~vG~Deg~i~-v~lgree  301 (794)
T KOG0276|consen  283 -KIAVGFDEGSVT-VKLGREE  301 (794)
T ss_pred             -eEEEeccCCcEE-EEccCCC
Confidence             477777666553 3443333

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-36  Score=249.44  Aligned_cols=243  Identities=19%  Similarity=0.334  Sum_probs=218.6

Q ss_pred             ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      +.|+|....++++-.+|.|.||+.++...+..+                           .-..-+|.+..|-.. .+++
T Consensus        19 Vd~HPtePw~la~LynG~V~IWnyetqtmVksf---------------------------eV~~~PvRa~kfiaR-knWi   70 (794)
T KOG0276|consen   19 VDFHPTEPWILAALYNGDVQIWNYETQTMVKSF---------------------------EVSEVPVRAAKFIAR-KNWI   70 (794)
T ss_pred             eecCCCCceEEEeeecCeeEEEecccceeeeee---------------------------eecccchhhheeeec-cceE
Confidence            445899999999999999999999876655543                           335678899999888 7799


Q ss_pred             EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC-ccceeeecCCeeeEEEc
Q 018293          139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWD  217 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~  217 (358)
                      ++|+.|..|+||+..+++.+..|..|.+.|++++.+|.. .++++++.|-+|++||.+..-. .+...+|...|.+++|+
T Consensus        71 v~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fn  149 (794)
T KOG0276|consen   71 VTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFN  149 (794)
T ss_pred             EEecCCceEEEEecccceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEec
Confidence            999999999999999999999999999999999999999 7899999999999999987754 45566899999999999


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC-cEEEEEeCCCcEEEEecCCCCce
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP-NLLATGSTDKMVKLWDLSNNQPS  296 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~  296 (358)
                      |.+.+.+++++-|++|++|.+...         .+.+++.+|...|+|+.+-+.|. .+|++|++|.+++|||.++..  
T Consensus       150 PkD~ntFaS~sLDrTVKVWslgs~---------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~--  218 (794)
T KOG0276|consen  150 PKDPNTFASASLDRTVKVWSLGSP---------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS--  218 (794)
T ss_pred             CCCccceeeeeccccEEEEEcCCC---------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH--
Confidence            999999999999999999999987         88899999999999999998542 499999999999999999988  


Q ss_pred             eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      |+.++.+|...|..+.|+|.-+ ++++|+.||+++||+..+-+...
T Consensus       219 CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~  263 (794)
T KOG0276|consen  219 CVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEK  263 (794)
T ss_pred             HHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhh
Confidence            8999999999999999999999 79999999999999987755433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.8e-36  Score=255.22  Aligned_cols=267  Identities=20%  Similarity=0.315  Sum_probs=203.2

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCc--------------------CceeecC-----Ccccccc--------cc
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEV--------------------QPHVILG-----GIDEEKK--------KK  104 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~--------------------~~~~~~~-----~~~~~~~--------~~  104 (358)
                      ++.||+||+|||+|+.||.|+||.+...+..                    .+.....     ......+        ..
T Consensus       272 ~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p  351 (712)
T KOG0283|consen  272 AMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLP  351 (712)
T ss_pred             EEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCC
Confidence            4567999999999999999999998751110                    0000000     0000000        00


Q ss_pred             cccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEE
Q 018293          105 KSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG  184 (358)
Q Consensus       105 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  184 (358)
                      .....-..++...+.||.+.|..|+|+.+  ++|++++.|.+|++|++...+++..|. |.+.|+|++|+|-++++|++|
T Consensus       352 ~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSG  428 (712)
T KOG0283|consen  352 LKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISG  428 (712)
T ss_pred             CccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeec
Confidence            11112345677788999999999999987  489999999999999999999999998 999999999999888999999


Q ss_pred             eCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-----
Q 018293          185 SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-----  259 (358)
Q Consensus       185 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-----  259 (358)
                      +-||.|+||++...+... ......-|++++|.|+ ++..++|+.+|.+++|+....+.       .....+..|     
T Consensus       429 SLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~-------~~~~~I~~~~~Kk~  499 (712)
T KOG0283|consen  429 SLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPD-GKGAVIGTFNGYCRFYDTEGLKL-------VSDFHIRLHNKKKK  499 (712)
T ss_pred             ccccceEEeecCcCeeEe-ehhhhhhheeEEeccC-CceEEEEEeccEEEEEEccCCeE-------EEeeeEeeccCccc
Confidence            999999999998776554 4456688999999997 56999999999999999987633       111112212     


Q ss_pred             -CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          260 -DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       260 -~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                       ...|+++.|.|.....+++.+.|..|+|||.++..+++.+.-......-....|+.||++ ++++++|..|++|++..
T Consensus       500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~-IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKH-IVSASEDSWVYIWKNDS  577 (712)
T ss_pred             cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCE-EEEeecCceEEEEeCCC
Confidence             237999999997766678888999999999988875444432223344567889999997 77889999999999844

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6e-37  Score=236.89  Aligned_cols=268  Identities=21%  Similarity=0.391  Sum_probs=220.6

Q ss_pred             CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccc
Q 018293            6 NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI   85 (358)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~   85 (358)
                      ++..++.|..++     .+.+|+...-.-..+...|    ...++|+.+         +.+.+++|+.|.+|+|||++++
T Consensus       206 DD~kiVSGlrDn-----TikiWD~n~~~c~~~L~GH----tGSVLCLqy---------d~rviisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  206 DDEKIVSGLRDN-----TIKIWDKNSLECLKILTGH----TGSVLCLQY---------DERVIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             cchhhhcccccC-----ceEEeccccHHHHHhhhcC----CCcEEeeec---------cceEEEecCCCceEEEEeccCC
Confidence            455566666665     6667776543222222233    334458766         6779999999999999999987


Q ss_pred             cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc---eeeeec
Q 018293           86 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK---CNLTLE  162 (358)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~  162 (358)
                      +++.                           .+.+|...|..+.|+..   ++++++.|.++.+||+....   +.+.+.
T Consensus       268 e~l~---------------------------tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~rrVLv  317 (499)
T KOG0281|consen  268 EPLN---------------------------TLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLRRVLV  317 (499)
T ss_pred             chhh---------------------------HHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHHHHHh
Confidence            7655                           55689999999999954   89999999999999997653   455678


Q ss_pred             ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCC
Q 018293          163 HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK  242 (358)
Q Consensus       163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~  242 (358)
                      +|...|+.+.|+.   +++++++.|.+|++|++.+.+.+....+|...|-|+.+.   +.++++|+.|.+|++||+..+ 
T Consensus       318 GHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G-  390 (499)
T KOG0281|consen  318 GHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG-  390 (499)
T ss_pred             hhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc---CeEEEecCCCceEEEEecccc-
Confidence            9999999999975   689999999999999999999999899999999998874   569999999999999999998 


Q ss_pred             CCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc-------eeeEecCCCCceeEEEEEcC
Q 018293          243 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-------SCIASRNPKAGAVFSVAFSE  315 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~v~~~~~~~  315 (358)
                              .++..+.+|..-|.++.|..   ..+++|+.||+|++||+..+..       .++.....|.+.|..+.|..
T Consensus       391 --------~cLRvLeGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~  459 (499)
T KOG0281|consen  391 --------ACLRVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE  459 (499)
T ss_pred             --------HHHHHHhchHHhhhheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc
Confidence                    88999999999999999985   7899999999999999987643       26667778999999999965


Q ss_pred             CCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          316 DSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       316 ~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      -   .+++++.|.+|.|||+.++..-.
T Consensus       460 f---qIvsssHddtILiWdFl~~~~~~  483 (499)
T KOG0281|consen  460 F---QIISSSHDDTILIWDFLNGPPSA  483 (499)
T ss_pred             e---EEEeccCCCeEEEEEcCCCCccc
Confidence            3   47788999999999998876553

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.8e-36  Score=222.17  Aligned_cols=219  Identities=23%  Similarity=0.392  Sum_probs=196.5

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC-CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  199 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  199 (358)
                      -++.+..++|++...+.+++++.||++++||+.. ..+++.++.|..+|.++.|++.....+++++.|++|++|+...+.
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            4678999999999888999999999999999643 367899999999999999999887889999999999999999999


Q ss_pred             CccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE
Q 018293          200 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  279 (358)
Q Consensus       200 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~  279 (358)
                      .+....+|...|....|+|..++++++++.|+.+++||++..         .....+..|...|.++.|+.-.+++|+||
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~---------gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg  209 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP---------GKFMSIEAHNSEILCCDWSKYNHNVLATG  209 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC---------CceeEEEeccceeEeecccccCCcEEEec
Confidence            888888999999999999999999999999999999999987         33445899999999999999888999999


Q ss_pred             eCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCc
Q 018293          280 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS  349 (358)
Q Consensus       280 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~  349 (358)
                      +.|+.|++||+++.+. ++.++.+|.-.|..++|||....+|++++.|-+++|||...+....+...++.
T Consensus       210 ~vd~~vr~wDir~~r~-pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht  278 (311)
T KOG0277|consen  210 GVDNLVRGWDIRNLRT-PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT  278 (311)
T ss_pred             CCCceEEEEehhhccc-cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence            9999999999998773 67888999999999999998877999999999999999997776655555443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-35  Score=253.88  Aligned_cols=281  Identities=17%  Similarity=0.289  Sum_probs=228.8

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      |+|+|..++++++..++     .+.+||...+....-+..|+.++.           .+.|+|++.++++|+.|-.|+||
T Consensus        15 lsFHP~rPwILtslHsG-----~IQlWDYRM~tli~rFdeHdGpVR-----------gv~FH~~qplFVSGGDDykIkVW   78 (1202)
T KOG0292|consen   15 LSFHPKRPWILTSLHSG-----VIQLWDYRMGTLIDRFDEHDGPVR-----------GVDFHPTQPLFVSGGDDYKIKVW   78 (1202)
T ss_pred             eecCCCCCEEEEeecCc-----eeeeehhhhhhHHhhhhccCCccc-----------eeeecCCCCeEEecCCccEEEEE
Confidence            68999999999998875     445555444333344455554443           34569999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      +..+                           .+....+.||-+.|..+.|++. -.+++++|.|-+|+||+..+++++..
T Consensus        79 nYk~---------------------------rrclftL~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwqsr~~iav  130 (1202)
T KOG0292|consen   79 NYKT---------------------------RRCLFTLLGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQSRKCIAV  130 (1202)
T ss_pred             eccc---------------------------ceehhhhccccceeEEeeccCC-CceEEEccCCCeEEEEeccCCceEEE
Confidence            9964                           5555678899999999999999 56999999999999999999999999


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-----------------------------cceeeecCCe
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-----------------------------GFKWAVAADV  211 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------------------------~~~~~~~~~i  211 (358)
                      +.+|...|.|..|+|.. .++++++-|-+|++||+..-+..                             ....+|...|
T Consensus       131 ltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGV  209 (1202)
T KOG0292|consen  131 LTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGV  209 (1202)
T ss_pred             EecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccccc
Confidence            99999999999999988 79999999999999998632110                             1123567789


Q ss_pred             eeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecC
Q 018293          212 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  291 (358)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~  291 (358)
                      +-++|+|.-+ ++++|++|..|++|.+...+.       -.+....+|...|.++-|+|.. +++++.++|++|+|||+.
T Consensus       210 NwaAfhpTlp-liVSG~DDRqVKlWrmnetKa-------WEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~  280 (1202)
T KOG0292|consen  210 NWAAFHPTLP-LIVSGADDRQVKLWRMNETKA-------WEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMT  280 (1202)
T ss_pred             ceEEecCCcc-eEEecCCcceeeEEEeccccc-------eeehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEecc
Confidence            9999999654 999999999999999987532       3455678999999999999987 899999999999999999


Q ss_pred             CCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          292 NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       292 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      ...  .+..+......-+.++-+|..+ +++ ++.|+.+.||.++...
T Consensus       281 kRt--~v~tfrrendRFW~laahP~lN-LfA-AgHDsGm~VFkleREr  324 (1202)
T KOG0292|consen  281 KRT--SVQTFRRENDRFWILAAHPELN-LFA-AGHDSGMIVFKLERER  324 (1202)
T ss_pred             ccc--ceeeeeccCCeEEEEEecCCcc-eee-eecCCceEEEEEcccC
Confidence            887  5666655567889999999998 566 5567777788776443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.1e-35  Score=254.84  Aligned_cols=250  Identities=26%  Similarity=0.424  Sum_probs=212.9

Q ss_pred             ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      +.|+++|+++++++.|+.+++|+......                         .....+.+|...|.+++|+|+ +.++
T Consensus       165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~~~l~~h~~~v~~~~fs~d-~~~l  218 (456)
T KOG0266|consen  165 VDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------NLLRELSGHTRGVSDVAFSPD-GSYL  218 (456)
T ss_pred             EEEcCCCCeEEEccCCCcEEEeecccccc-------------------------hhhccccccccceeeeEECCC-CcEE
Confidence            46799999999999999999999954331                         122344689999999999999 6699


Q ss_pred             EEEEcCCeEEEEEC-CCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293          139 ASASADKQVKIWDV-AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  217 (358)
Q Consensus       139 ~s~~~dg~v~iwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  217 (358)
                      ++++.|+++++||+ ..+..++++.+|...|++++|+|++ +++++|+.|++|++||+++++.......|...|++++|+
T Consensus       219 ~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~  297 (456)
T KOG0266|consen  219 LSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS  297 (456)
T ss_pred             EEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence            99999999999999 5558899999999999999999999 999999999999999999999988888999999999999


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCC--ceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      ++ ++++++++.|+.|++||+.++..       .+...+..+..  +++++.|+|++ .++++++.|+.+++||++... 
T Consensus       298 ~d-~~~l~s~s~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~-  367 (456)
T KOG0266|consen  298 PD-GNLLVSASYDGTIRVWDLETGSK-------LCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGK-  367 (456)
T ss_pred             CC-CCEEEEcCCCccEEEEECCCCce-------eeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCc-
Confidence            95 55888999999999999998831       03445555544  49999999998 899999999999999999887 


Q ss_pred             eeeEecCCCCc---eeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293          296 SCIASRNPKAG---AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       296 ~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                       ......+|..   .+.+...++.+.+ +++|+.|+.|++||+.++..+.+.-.+
T Consensus       368 -~~~~~~~~~~~~~~~~~~~~~~~~~~-i~sg~~d~~v~~~~~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  368 -SVGTYTGHSNLVRCIFSPTLSTGGKL-IYSGSEDGSVYVWDSSSGGILQRLEGH  420 (456)
T ss_pred             -ceeeecccCCcceeEecccccCCCCe-EEEEeCCceEEEEeCCccchhhhhcCC
Confidence             4556666655   3445566788884 889999999999999998877776666

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.7e-36  Score=218.25  Aligned_cols=240  Identities=23%  Similarity=0.378  Sum_probs=202.9

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      +++|+-||+|.++++.|.+|++|+...                           ..+.+.+.+|..+|..++.+.+ ...
T Consensus        22 avryN~dGnY~ltcGsdrtvrLWNp~r---------------------------g~liktYsghG~EVlD~~~s~D-nsk   73 (307)
T KOG0316|consen   22 AVRYNVDGNYCLTCGSDRTVRLWNPLR---------------------------GALIKTYSGHGHEVLDAALSSD-NSK   73 (307)
T ss_pred             EEEEccCCCEEEEcCCCceEEeecccc---------------------------cceeeeecCCCceeeecccccc-ccc
Confidence            345689999999999999999999854                           4455577799999999999999 668


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC--CccceeeecCCeeeEE
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST--HSGFKWAVAADVESLA  215 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~  215 (358)
                      +++|+.|..+.+||+++|+..+.+.+|...|+.++|+.+. ..+++|+.|.++++||.+...  +++........|.++.
T Consensus        74 f~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~  152 (307)
T KOG0316|consen   74 FASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID  152 (307)
T ss_pred             cccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE
Confidence            9999999999999999999999999999999999999988 899999999999999998764  4454556677899998


Q ss_pred             EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      ...   ..+++|+.||+++.||++.+         .....  -...+|+++.|++++ +..++++.|+++++.|-.+++ 
T Consensus       153 v~~---heIvaGS~DGtvRtydiR~G---------~l~sD--y~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGk-  216 (307)
T KOG0316|consen  153 VAE---HEIVAGSVDGTVRTYDIRKG---------TLSSD--YFGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGK-  216 (307)
T ss_pred             ecc---cEEEeeccCCcEEEEEeecc---------eeehh--hcCCcceeEEecCCC-CEEEEeeccceeeecccchhH-
Confidence            864   47999999999999999987         32222  234689999999999 899999999999999999998 


Q ss_pred             eeeEecCCCCce--eEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          296 SCIASRNPKAGA--VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       296 ~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                       .+....+|...  =...+++.... .+++|++||.+++||+.++..+..+
T Consensus       217 -lL~sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLvd~~~~sk~  265 (307)
T KOG0316|consen  217 -LLKSYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLVDETQISKL  265 (307)
T ss_pred             -HHHHhcccccceeeeeeeecccce-eEEeccCCceEEEEEeccceeeeee
Confidence             45566777554  33456666666 5899999999999999988776543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.1e-35  Score=217.25  Aligned_cols=232  Identities=19%  Similarity=0.310  Sum_probs=197.5

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      +.-+|++++.|-+||+|...++.+.+.+                           +.....|+.+...|+ +..||+++.
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTi---------------------------qh~dsqVNrLeiTpd-k~~LAaa~~   60 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTI---------------------------QHPDSQVNRLEITPD-KKDLAAAGN   60 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEE---------------------------ecCccceeeEEEcCC-cchhhhccC
Confidence            3458999999999999999987776543                           234578999999999 668887776


Q ss_pred             CCeEEEEECCCCc--eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCC
Q 018293          144 DKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  221 (358)
Q Consensus       144 dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  221 (358)
                       -.|++||+++++  ++.++.+|...|+++.|..+| +.+++|++||+++|||++.....+ ...+.++|+++..+|+ .
T Consensus        61 -qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR-~~~~~spVn~vvlhpn-Q  136 (311)
T KOG0315|consen   61 -QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQR-NYQHNSPVNTVVLHPN-Q  136 (311)
T ss_pred             -CeeEEEEccCCCCCceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcccch-hccCCCCcceEEecCC-c
Confidence             579999999875  588999999999999999999 999999999999999999966555 6677899999999995 5


Q ss_pred             CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC----ce
Q 018293          222 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ----PS  296 (358)
Q Consensus       222 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~  296 (358)
                      ..|++|..+|.|++||+...         .....+ .....+|.++...|+| .+|+++...|..++|++-...    ..
T Consensus       137 teLis~dqsg~irvWDl~~~---------~c~~~liPe~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~l~  206 (311)
T KOG0315|consen  137 TELISGDQSGNIRVWDLGEN---------SCTHELIPEDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASELE  206 (311)
T ss_pred             ceEEeecCCCcEEEEEccCC---------ccccccCCCCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccccce
Confidence            58999999999999999987         222222 3345789999999999 899999999999999987643    34


Q ss_pred             eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      ++..++.|.+.+..+.+||+++| ||+++.|.+++||+..+.
T Consensus       207 P~~k~~ah~~~il~C~lSPd~k~-lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  207 PVHKFQAHNGHILRCLLSPDVKY-LATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             EhhheecccceEEEEEECCCCcE-EEeecCCceEEEEecCCc
Confidence            56678889999999999999996 999999999999999876

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.4e-35  Score=245.99  Aligned_cols=289  Identities=17%  Similarity=0.230  Sum_probs=225.8

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      .++-.|..|+.|+..-  +.+-||-|..+. .......|..     -..|+++       ||||+++|||+.||.|+|||
T Consensus       314 ~~N~tGDWiA~g~~kl--gQLlVweWqsEs-YVlKQQgH~~-----~i~~l~Y-------SpDgq~iaTG~eDgKVKvWn  378 (893)
T KOG0291|consen  314 SFNSTGDWIAFGCSKL--GQLLVWEWQSES-YVLKQQGHSD-----RITSLAY-------SPDGQLIATGAEDGKVKVWN  378 (893)
T ss_pred             EecccCCEEEEcCCcc--ceEEEEEeeccc-eeeecccccc-----ceeeEEE-------CCCCcEEEeccCCCcEEEEe
Confidence            5677899999997753  566666666543 2222222222     2235554       99999999999999999999


Q ss_pred             cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee
Q 018293           82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL  161 (358)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  161 (358)
                      ..++-+                           ...+..|+..|+.+.|+.. ++.+++.+.||+|+.||+...+..+++
T Consensus       379 ~~SgfC---------------------------~vTFteHts~Vt~v~f~~~-g~~llssSLDGtVRAwDlkRYrNfRTf  430 (893)
T KOG0291|consen  379 TQSGFC---------------------------FVTFTEHTSGVTAVQFTAR-GNVLLSSSLDGTVRAWDLKRYRNFRTF  430 (893)
T ss_pred             ccCceE---------------------------EEEeccCCCceEEEEEEec-CCEEEEeecCCeEEeeeecccceeeee
Confidence            975433                           3356679999999999999 779999999999999999999988888


Q ss_pred             ccc-ccceeeEEEcCCCCcEEEEEeCCC-cEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcc
Q 018293          162 EHH-TDKVQAVAWNHHSPQILLSGSFDR-SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR  239 (358)
Q Consensus       162 ~~~-~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~  239 (358)
                      ... .-...|++..|.| .++++|+.|. .|.+|++++++.+..+.+|+++|.+++|+|.+ ..+++++.|.+|++||+-
T Consensus       431 t~P~p~QfscvavD~sG-elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if  508 (893)
T KOG0291|consen  431 TSPEPIQFSCVAVDPSG-ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIF  508 (893)
T ss_pred             cCCCceeeeEEEEcCCC-CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc-CeEEeccccceEEEEEee
Confidence            642 2345788888988 7777887776 59999999999999999999999999999965 599999999999999998


Q ss_pred             cCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce------------------eeEec
Q 018293          240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS------------------CIASR  301 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------------~~~~~  301 (358)
                      ..         ......-.+...+..++|.|+| ..|++++.||.|.+||.......                  .....
T Consensus       509 ~s---------~~~vEtl~i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~  578 (893)
T KOG0291|consen  509 SS---------SGTVETLEIRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN  578 (893)
T ss_pred             cc---------CceeeeEeeccceeEEEEcCCC-CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence            75         2233334467789999999999 89999999999999998764321                  00111


Q ss_pred             CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293          302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       302 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                      .......+.+++++||.+ +++||..+.|++|++.++-.++++--
T Consensus       579 sa~~K~Ftti~ySaDG~~-IlAgG~sn~iCiY~v~~~vllkkfqi  622 (893)
T KOG0291|consen  579 SAKGKTFTTICYSADGKC-ILAGGESNSICIYDVPEGVLLKKFQI  622 (893)
T ss_pred             cccCCceEEEEEcCCCCE-EEecCCcccEEEEECchhheeeeEEe
Confidence            122357899999999996 66788999999999999887765443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=5.1e-35  Score=227.26  Aligned_cols=276  Identities=15%  Similarity=0.259  Sum_probs=220.6

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++++|+.+++++|+.++     .-++|+...+..+.....|+..+    .|+.|       |.+|.+||||+.+|.|+||
T Consensus        70 vsl~P~~~l~aTGGgDD-----~AflW~~~~ge~~~eltgHKDSV----t~~~F-------shdgtlLATGdmsG~v~v~  133 (399)
T KOG0296|consen   70 VSLHPNNNLVATGGGDD-----LAFLWDISTGEFAGELTGHKDSV----TCCSF-------SHDGTLLATGDMSGKVLVF  133 (399)
T ss_pred             EEeCCCCceEEecCCCc-----eEEEEEccCCcceeEecCCCCce----EEEEE-------ccCceEEEecCCCccEEEE
Confidence            36789999999998877     89999998875444444443222    35544       8999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      +..++....+                           +...-..|.-+.|+|. ...|++|+.||.+.+|.+.++...+.
T Consensus       134 ~~stg~~~~~---------------------------~~~e~~dieWl~WHp~-a~illAG~~DGsvWmw~ip~~~~~kv  185 (399)
T KOG0296|consen  134 KVSTGGEQWK---------------------------LDQEVEDIEWLKWHPR-AHILLAGSTDGSVWMWQIPSQALCKV  185 (399)
T ss_pred             EcccCceEEE---------------------------eecccCceEEEEeccc-ccEEEeecCCCcEEEEECCCcceeeE
Confidence            9986544332                           1124466888899998 77999999999999999999888899


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee----------------------------------
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----------------------------------  206 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------------------  206 (358)
                      +.+|..++++=.|.|+| +.++++..||+|++||+.++.+......                                  
T Consensus       186 ~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s  264 (399)
T KOG0296|consen  186 MSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS  264 (399)
T ss_pred             ecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcccc
Confidence            99999999999999999 8899999999999999987754332110                                  


Q ss_pred             -----------------ecCCeeeEEEcCC--CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEE
Q 018293          207 -----------------VAADVESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS  267 (358)
Q Consensus       207 -----------------~~~~i~~~~~~~~--~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  267 (358)
                                       +...+.++.+.|.  .-.++++|+-||+|.+||+...          .++..-.|..+|..+.
T Consensus       265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----------~~R~~c~he~~V~~l~  334 (399)
T KOG0296|consen  265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----------TLRHICEHEDGVTKLK  334 (399)
T ss_pred             ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----------hhheeccCCCceEEEE
Confidence                             0011122222221  1236888999999999999875          3344456888899999


Q ss_pred             ecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          268 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       268 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      |-+ . .+|++++.+|.|+.||.++++  ++..+.+|...|.+++++|+++ ++++++.|++.+||+..
T Consensus       335 w~~-t-~~l~t~c~~g~v~~wDaRtG~--l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  335 WLN-T-DYLLTACANGKVRQWDARTGQ--LKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EcC-c-chheeeccCceEEeeeccccc--eEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence            998 4 799999999999999999999  7888999999999999999999 69999999999999864

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=5.9e-37  Score=236.96  Aligned_cols=225  Identities=26%  Similarity=0.447  Sum_probs=200.1

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      |...+++|..|++|+|||.++..                           ....+.||++.|.|+.|..   ..+++|+.
T Consensus       206 DD~kiVSGlrDnTikiWD~n~~~---------------------------c~~~L~GHtGSVLCLqyd~---rviisGSS  255 (499)
T KOG0281|consen  206 DDEKIVSGLRDNTIKIWDKNSLE---------------------------CLKILTGHTGSVLCLQYDE---RVIVSGSS  255 (499)
T ss_pred             cchhhhcccccCceEEeccccHH---------------------------HHHhhhcCCCcEEeeeccc---eEEEecCC
Confidence            77789999999999999997543                           3446779999999999974   49999999


Q ss_pred             CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc---cceeeecCCeeeEEEcCCC
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---GFKWAVAADVESLAWDPHA  220 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~~~  220 (358)
                      |.+|++||+++++++.++-+|...|..+.|+.   .++++++.|.++.+||+.....+   ..+.+|...|+.+.|+.  
T Consensus       256 DsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--  330 (499)
T KOG0281|consen  256 DSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--  330 (499)
T ss_pred             CceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--
Confidence            99999999999999999999999999999985   58999999999999999877543   34567899999999964  


Q ss_pred             CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe
Q 018293          221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  300 (358)
Q Consensus       221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  300 (358)
                       .++++++.|.+|++|++.+.         ..+..+.+|...|.|+.+.  + +++++|+.|.+|++||+..+.  ++..
T Consensus       331 -kyIVsASgDRTikvW~~st~---------efvRtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~--cLRv  395 (499)
T KOG0281|consen  331 -KYIVSASGDRTIKVWSTSTC---------EFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA--CLRV  395 (499)
T ss_pred             -ceEEEecCCceEEEEeccce---------eeehhhhcccccceehhcc--C-eEEEecCCCceEEEEeccccH--HHHH
Confidence             49999999999999999998         8899999999999999887  3 899999999999999999998  7778


Q ss_pred             cCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       301 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      +++|..-|.++.|...   .+++|+.||+|++||+..+...
T Consensus       396 LeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  396 LEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDP  433 (499)
T ss_pred             HhchHHhhhheeecCc---eeeeccccceEEEEecccccCC
Confidence            8999999999999654   4889999999999999887654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3e-35  Score=247.74  Aligned_cols=285  Identities=22%  Similarity=0.315  Sum_probs=232.9

Q ss_pred             CCcEEEEEEecCCCceEEEEEEeccCCCCC-ceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEccc
Q 018293            6 NDAVIVCARNEDDVSHLEVYILEESDGGDP-NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDV   84 (358)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~   84 (358)
                      ..+.+++...+.     ++.+|+..+.... .+...+     ..+..+.++      .|+.++||+++..+.+++|++.+
T Consensus       292 ~~~~~l~vtaeQ-----nl~l~d~~~l~i~k~ivG~n-----dEI~Dm~~l------G~e~~~laVATNs~~lr~y~~~~  355 (775)
T KOG0319|consen  292 SMSQLLLVTAEQ-----NLFLYDEDELTIVKQIVGYN-----DEILDMKFL------GPEESHLAVATNSPELRLYTLPT  355 (775)
T ss_pred             ccCceEEEEccc-----eEEEEEccccEEehhhcCCc-----hhheeeeec------CCccceEEEEeCCCceEEEecCC
Confidence            344455555665     6777766553221 222222     233355554      68899999999999999998875


Q ss_pred             ccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC----ceeee
Q 018293           85 IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG----KCNLT  160 (358)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~  160 (358)
                      ..+.                            .+.||+..|.+++...+ +.+|++|+.|.++++|.++.+    .++..
T Consensus       356 ~~c~----------------------------ii~GH~e~vlSL~~~~~-g~llat~sKD~svilWr~~~~~~~~~~~a~  406 (775)
T KOG0319|consen  356 SYCQ----------------------------IIPGHTEAVLSLDVWSS-GDLLATGSKDKSVILWRLNNNCSKSLCVAQ  406 (775)
T ss_pred             CceE----------------------------EEeCchhheeeeeeccc-CcEEEEecCCceEEEEEecCCcchhhhhhh
Confidence            4332                            45589999999995555 469999999999999988543    34566


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc---------cceeeecCCeeeEEEcCCCCCeEEEEecCC
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---------GFKWAVAADVESLAWDPHAEHSFVVSLEDG  231 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg  231 (358)
                      ..+|...|.+++++..+..+|++++.|+++++|++...+..         .....|...|++++.+|+ ..++++|+.|.
T Consensus       407 ~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n-dkLiAT~SqDk  485 (775)
T KOG0319|consen  407 ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN-DKLIATGSQDK  485 (775)
T ss_pred             hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC-CceEEeccccc
Confidence            78999999999999988899999999999999999873221         122357889999999995 56999999999


Q ss_pred             eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEE
Q 018293          232 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  311 (358)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  311 (358)
                      +.++|++...         .....+.+|...+.++.|+|.. +.++|+|.|++|+||.+.+..  ++.++.+|...|..+
T Consensus       486 taKiW~le~~---------~l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fS--ClkT~eGH~~aVlra  553 (775)
T KOG0319|consen  486 TAKIWDLEQL---------RLLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFS--CLKTFEGHTSAVLRA  553 (775)
T ss_pred             ceeeecccCc---------eEEEEeeCCccceEEEEecccc-ceeEeccCCceEEEEEeccce--eeeeecCccceeEee
Confidence            9999999965         8889999999999999999987 899999999999999999988  899999999999999


Q ss_pred             EEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCc
Q 018293          312 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS  349 (358)
Q Consensus       312 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~  349 (358)
                      .|-.+|.+ |++++.||.|++|++++++++..+-.|..
T Consensus       554 ~F~~~~~q-liS~~adGliKlWnikt~eC~~tlD~H~D  590 (775)
T KOG0319|consen  554 SFIRNGKQ-LISAGADGLIKLWNIKTNECEMTLDAHND  590 (775)
T ss_pred             eeeeCCcE-EEeccCCCcEEEEeccchhhhhhhhhccc
Confidence            99999995 88999999999999999999987776654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-35  Score=232.35  Aligned_cols=281  Identities=16%  Similarity=0.261  Sum_probs=220.9

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeecee-ecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI-IIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI   79 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v   79 (358)
                      ++||++|..||+|..+.     ..-+|....+....+  .++. .....+.-+.|       |||.++|++|+.|..+.+
T Consensus       230 l~FS~nGkyLAsaSkD~-----Taiiw~v~~d~~~kl--~~tlvgh~~~V~yi~w-------SPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  230 LQFSHNGKYLASASKDS-----TAIIWIVVYDVHFKL--KKTLVGHSQPVSYIMW-------SPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             EEEcCCCeeEeeccCCc-----eEEEEEEecCcceee--eeeeecccCceEEEEE-------CCCCCeEEecCchHheee
Confidence            57999999999998776     444555544322122  2221 12223335555       999999999999999999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  159 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  159 (358)
                      ||+++++....+.                          .+|...+.+++|.|| +..+++|+.|+++..||+.. ....
T Consensus       296 wDv~tgd~~~~y~--------------------------~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~wdlDg-n~~~  347 (519)
T KOG0293|consen  296 WDVDTGDLRHLYP--------------------------SGLGFSVSSCAWCPD-GFRFVTGSPDRTIIMWDLDG-NILG  347 (519)
T ss_pred             ccCCcchhhhhcc--------------------------cCcCCCcceeEEccC-CceeEecCCCCcEEEecCCc-chhh
Confidence            9999887654321                          235688999999999 67899999999999999764 4444


Q ss_pred             eeccc-ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293          160 TLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  238 (358)
Q Consensus       160 ~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~  238 (358)
                      ..++- ...|.+++..+|| ..+++.+.|..|++++.++..... ......+|++++.+.+ +.++++.-.+..+++||+
T Consensus       348 ~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d-~k~~LvnL~~qei~LWDl  424 (519)
T KOG0293|consen  348 NWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKD-GKLALVNLQDQEIHLWDL  424 (519)
T ss_pred             cccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCC-CcEEEEEcccCeeEEeec
Confidence            44432 2568999999999 888888899999999998766554 4456789999999995 558888889999999999


Q ss_pred             ccCCCCCCCCCCCccEEEeecCCc--eeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293          239 RTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                      ...         ..+..+.+|...  +-.-+|.-....++++|++|+.|+||+..+++  .+..+.+|...|++++|+|.
T Consensus       425 ~e~---------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk--ll~~LsGHs~~vNcVswNP~  493 (519)
T KOG0293|consen  425 EEN---------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK--LLAVLSGHSKTVNCVSWNPA  493 (519)
T ss_pred             chh---------hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc--eeEeecCCcceeeEEecCCC
Confidence            965         677777787643  44445655444799999999999999999999  57788999999999999999


Q ss_pred             CCeEEEEEccCCeEEEEEccC
Q 018293          317 SPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       317 ~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ..+++|+++.||+|+||....
T Consensus       494 ~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  494 DPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CHHHhhccCCCCeEEEecCCc
Confidence            999999999999999998764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.1e-34  Score=224.93  Aligned_cols=280  Identities=22%  Similarity=0.342  Sum_probs=228.9

Q ss_pred             CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccc
Q 018293            6 NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI   85 (358)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~   85 (358)
                      ....|++|+.++     .+.+|+... +....+..|...+    ..+.|+..    ++....|++++.|.++++|.++.+
T Consensus       114 ~~~~IltgsYDg-----~~riWd~~G-k~~~~~~Ght~~i----k~v~~v~~----n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  114 ASKWILTGSYDG-----TSRIWDLKG-KSIKTIVGHTGPI----KSVAWVIK----NSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             cCceEEEeecCC-----eeEEEecCC-ceEEEEecCCcce----eeeEEEec----CCccceEEEecCCceEEEEEecCc
Confidence            368899999998     778888776 3444455554333    36777653    444558999999999999999865


Q ss_pred             cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECC------------
Q 018293           86 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA------------  153 (358)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~------------  153 (358)
                      +...                       .....-.||++.|-+++..++ +..+++|+.|.++.+|+.+            
T Consensus       180 ~~~~-----------------------~~~~~~~GHk~~V~sVsv~~s-gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~  235 (423)
T KOG0313|consen  180 ENKV-----------------------KALKVCRGHKRSVDSVSVDSS-GTRFCSGSWDTMLKIWSVETDEEDELESSSN  235 (423)
T ss_pred             hhhh-----------------------hHHhHhcccccceeEEEecCC-CCeEEeecccceeeecccCCCccccccccch
Confidence            4332                       122233389999999999999 6799999999999999932            


Q ss_pred             -------------CCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC
Q 018293          154 -------------AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  220 (358)
Q Consensus       154 -------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  220 (358)
                                   ++.++..+.+|..+|.++.|++.  ..+++++.|.+|+.||+.++.... .......+.++..+| .
T Consensus       236 ~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~-~~~~~ksl~~i~~~~-~  311 (423)
T KOG0313|consen  236 RRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKS-TLTTNKSLNCISYSP-L  311 (423)
T ss_pred             hhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccccee-eeecCcceeEeeccc-c
Confidence                         12355677899999999999984  589999999999999999988776 445667899999999 5


Q ss_pred             CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe
Q 018293          221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  300 (358)
Q Consensus       221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  300 (358)
                      ..++++|+.|..+++||.|++..      ....+.+.+|...|.++.|+|.....|++|+.|+++++||+|+.+. +++.
T Consensus       312 ~~Ll~~gssdr~irl~DPR~~~g------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~-plyd  384 (423)
T KOG0313|consen  312 SKLLASGSSDRHIRLWDPRTGDG------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA-PLYD  384 (423)
T ss_pred             cceeeecCCCCceeecCCCCCCC------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC-ccee
Confidence            67999999999999999998843      3566788999999999999999888999999999999999998763 5778


Q ss_pred             cCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       301 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      +.+|...|.++.|...+  .+++||.|.+|+++.-.
T Consensus       385 I~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  385 IAGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGS  418 (423)
T ss_pred             eccCCceEEEEeccCCc--eEEeccCcceEEEeccc
Confidence            88999999999998765  58999999999998753

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=4.7e-35  Score=227.04  Aligned_cols=278  Identities=17%  Similarity=0.291  Sum_probs=228.5

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      +++-|.+..+++|..++     .+.+||...+........|...+.           .+++|+--.||.+++.|+.|+.|
T Consensus       157 vavdP~n~wf~tgs~Dr-----tikIwDlatg~LkltltGhi~~vr-----------~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  157 VAVDPGNEWFATGSADR-----TIKIWDLATGQLKLTLTGHIETVR-----------GVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             EeeCCCceeEEecCCCc-----eeEEEEcccCeEEEeecchhheee-----------eeeecccCceEEEecCCCeeEEE
Confidence            46889999999998886     677777777522222222221111           33458888999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      |+...                           +.++.+.||-..|.|++..|. -..|++|+.|.++++||+++...+..
T Consensus       221 DLe~n---------------------------kvIR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~~V~~  272 (460)
T KOG0285|consen  221 DLEYN---------------------------KVIRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRASVHV  272 (460)
T ss_pred             echhh---------------------------hhHHHhccccceeEEEecccc-ceeEEecCCcceEEEeeecccceEEE
Confidence            99753                           444567799999999999999 67999999999999999999999999


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      +.+|..+|..+.+.|.+ ..+++|+.|++|++||++.++.......|...+.+++.+| ..+.|++++.| .++-|++..
T Consensus       273 l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP-~e~~fASas~d-nik~w~~p~  349 (460)
T KOG0285|consen  273 LSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP-KENLFASASPD-NIKQWKLPE  349 (460)
T ss_pred             ecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC-chhhhhccCCc-cceeccCCc
Confidence            99999999999999988 6799999999999999999999888889999999999999 56677777766 589999998


Q ss_pred             CCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeE-ec--CC---CCceeEEEEEc
Q 018293          241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA-SR--NP---KAGAVFSVAFS  314 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~--~~---~~~~v~~~~~~  314 (358)
                      +         ..+..+.+|..-|++++.+.|+  ++++|++.|.+.+||.+++...... ..  .+   ....|.+.+|.
T Consensus       350 g---------~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD  418 (460)
T KOG0285|consen  350 G---------EFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD  418 (460)
T ss_pred             c---------chhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence            7         6677799999999999999876  8999999999999999987521111 01  11   24568999999


Q ss_pred             CCCCeEEEEEccCCeEEEEEccC
Q 018293          315 EDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       315 ~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ..|. .|++|..|.+|++|.-..
T Consensus       419 ktg~-rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  419 KTGS-RLITGEADKTIKMYKEDE  440 (460)
T ss_pred             ccCc-eEEeccCCcceEEEeccc
Confidence            9998 599999999999997543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.4e-35  Score=238.30  Aligned_cols=278  Identities=17%  Similarity=0.283  Sum_probs=229.9

Q ss_pred             cccC-CCcEEEEEEecCCCceEEEEEEeccC-CCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293            2 TINP-NDAVIVCARNEDDVSHLEVYILEESD-GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI   79 (358)
Q Consensus         2 ~~~p-~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v   79 (358)
                      .+.| .+-+|+.+..+.     .+++|+.-. ..-...|.+|...+.           +++|+++|..+++++.|+.|++
T Consensus       221 ~~fp~~~hLlLS~gmD~-----~vklW~vy~~~~~lrtf~gH~k~Vr-----------d~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  221 QWFPKKGHLLLSGGMDG-----LVKLWNVYDDRRCLRTFKGHRKPVR-----------DASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hhccceeeEEEecCCCc-----eEEEEEEecCcceehhhhcchhhhh-----------hhhccccCCeeeeeecceeeee
Confidence            4667 788888887776     888887655 344556667755553           4456999999999999999999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  159 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  159 (358)
                      ||++++++...+.                            -...++|+.|.|++.+.+++|+.|+.|+.||+++++.++
T Consensus       285 wDtETG~~~~~f~----------------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq  336 (503)
T KOG0282|consen  285 WDTETGQVLSRFH----------------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ  336 (503)
T ss_pred             eccccceEEEEEe----------------------------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH
Confidence            9999988765432                            335689999999977899999999999999999999999


Q ss_pred             eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  238 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~  238 (358)
                      ++..|-+.|..+.|-+++ ..+++++.|+++++|+.+.+-.+.... .......++..+|+ +..+++=+.|+.|.+|.+
T Consensus       337 eYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~-~~~~~aQs~dN~i~ifs~  414 (503)
T KOG0282|consen  337 EYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPN-GKWFAAQSMDNYIAIFST  414 (503)
T ss_pred             HHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCC-CCeehhhccCceEEEEec
Confidence            999999999999999999 889999999999999999876655333 33456788999995 458999999999999997


Q ss_pred             ccCCCCCCCCCCCccEEEeecC--CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293          239 RTAKSDPDSTSQQSSFTLHAHD--KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                      .....      ......+.+|.  +.-..+.|+||| .+|++|..||.+.+||.++.+  .+..+..|.+++..+.|+|.
T Consensus       415 ~~~~r------~nkkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~k--l~~~lkah~~~ci~v~wHP~  485 (503)
T KOG0282|consen  415 VPPFR------LNKKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTK--LVSKLKAHDQPCIGVDWHPV  485 (503)
T ss_pred             ccccc------cCHhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhh--hhhccccCCcceEEEEecCC
Confidence            65422      13334556663  556789999999 899999999999999999988  56678889999999999998


Q ss_pred             CCeEEEEEccCCeEEEEE
Q 018293          317 SPFVLAIGGSKGKLEIWD  334 (358)
Q Consensus       317 ~~~~l~~~~~dg~i~vw~  334 (358)
                      ....+|+++.||.|++|+
T Consensus       486 e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  486 EPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CcceeEecccCceeEecC
Confidence            877899999999999996

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.8e-34  Score=237.97  Aligned_cols=273  Identities=23%  Similarity=0.403  Sum_probs=226.4

Q ss_pred             CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccc
Q 018293            6 NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI   85 (358)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~   85 (358)
                      ..+++++|...      .+|+|+...+....+...+    ...+.++.|       +++|++||+|..+|.|.|||..+.
T Consensus       187 s~n~laValg~------~vylW~~~s~~v~~l~~~~----~~~vtSv~w-------s~~G~~LavG~~~g~v~iwD~~~~  249 (484)
T KOG0305|consen  187 SANVLAVALGQ------SVYLWSASSGSVTELCSFG----EELVTSVKW-------SPDGSHLAVGTSDGTVQIWDVKEQ  249 (484)
T ss_pred             cCCeEEEEecc------eEEEEecCCCceEEeEecC----CCceEEEEE-------CCCCCEEEEeecCCeEEEEehhhc
Confidence            56788888554      8999999887433332222    444556666       899999999999999999999754


Q ss_pred             cCcCceeecCCcccccccccccCCceeccccccCC-CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee-ecc
Q 018293           86 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS-HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT-LEH  163 (358)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~  163 (358)
                      ....                           .+.+ |...|.+++|+.   ..+.+|+.|+.|..+|++..+.... +.+
T Consensus       250 k~~~---------------------------~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~  299 (484)
T KOG0305|consen  250 KKTR---------------------------TLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQG  299 (484)
T ss_pred             cccc---------------------------cccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhc
Confidence            4333                           3334 999999999994   4899999999999999998866555 889


Q ss_pred             cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEE--ecCCeEEEEEcccC
Q 018293          164 HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS--LEDGTIKGFDIRTA  241 (358)
Q Consensus       164 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~dg~i~i~d~~~~  241 (358)
                      |...|..++|++++ .++++|+.|+.+.|||............|.+.|.+++|+|....+||+|  +.|+.|++||..++
T Consensus       300 H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g  378 (484)
T KOG0305|consen  300 HRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG  378 (484)
T ss_pred             ccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence            99999999999999 9999999999999999988888888899999999999999999999996  57999999999987


Q ss_pred             CCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEE-EeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeE
Q 018293          242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFV  320 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  320 (358)
                               ..+..+. ....|.++.|++....++.+ |..++.|.||+..+.+  .+..+.+|...|..++++|||.+ 
T Consensus       379 ---------~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~--~~~~l~gH~~RVl~la~SPdg~~-  445 (484)
T KOG0305|consen  379 ---------ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK--LVAELLGHTSRVLYLALSPDGET-  445 (484)
T ss_pred             ---------cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc--eeeeecCCcceeEEEEECCCCCE-
Confidence                     4444443 35789999999987445554 3447789999999876  67788999999999999999995 


Q ss_pred             EEEEccCCeEEEEEccCCC
Q 018293          321 LAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       321 l~~~~~dg~i~vw~~~~~~  339 (358)
                      +++|+.|.++++|++-+..
T Consensus       446 i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  446 IVTGAADETLRFWNLFDER  464 (484)
T ss_pred             EEEecccCcEEeccccCCC
Confidence            8899999999999998753

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.8e-34  Score=213.00  Aligned_cols=237  Identities=26%  Similarity=0.426  Sum_probs=199.2

Q ss_pred             ccccCC-CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           59 LKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        59 ~~~s~~-~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      ++|+|- |..||+|+.|+.|++|+...++......++                       -.+|+..|..++|+|. +++
T Consensus        20 ~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vl-----------------------d~~hkrsVRsvAwsp~-g~~   75 (312)
T KOG0645|consen   20 VAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVL-----------------------DDGHKRSVRSVAWSPH-GRY   75 (312)
T ss_pred             EEeccCCceEEEeecCCceEEEEecCCCCcEEEEEec-----------------------cccchheeeeeeecCC-CcE
Confidence            344777 889999999999999999754333322222                       1379999999999999 669


Q ss_pred             EEEEEcCCeEEEEECCCC--ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC---CccceeeecCCee
Q 018293          138 LASASADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST---HSGFKWAVAADVE  212 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~  212 (358)
                      |++|+.|.++.||.-..+  +++..+.+|...|.+++|+++| ++|++++.|..|-+|.+....   ....+..|...|.
T Consensus        76 La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK  154 (312)
T KOG0645|consen   76 LASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVK  154 (312)
T ss_pred             EEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeecccccccc
Confidence            999999999999986644  7899999999999999999999 999999999999999998543   3455678899999


Q ss_pred             eEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293          213 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  292 (358)
Q Consensus       213 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~  292 (358)
                      .+.|+|. ..+|++++.|++|++|+-....      ...+...+.+|...|.+++|+|.| ..|++++.|++++||-..+
T Consensus       155 ~V~WHPt-~dlL~S~SYDnTIk~~~~~~dd------dW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~  226 (312)
T KOG0645|consen  155 HVIWHPT-EDLLFSCSYDNTIKVYRDEDDD------DWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYT  226 (312)
T ss_pred             EEEEcCC-cceeEEeccCCeEEEEeecCCC------CeeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeecc
Confidence            9999994 5599999999999999987421      147889999999999999999998 8999999999999999764


Q ss_pred             CCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          293 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       293 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      .-      ...|...+..+.|. ++  ++++++.|+.|++|.-..
T Consensus       227 ~~------~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  227 DL------SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESD  262 (312)
T ss_pred             Cc------chhcccceEeeeec-cc--ceEeccCCCEEEEEEecC
Confidence            32      12466789999999 55  699999999999998764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-35  Score=251.54  Aligned_cols=255  Identities=20%  Similarity=0.348  Sum_probs=223.9

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      .++|+|....++++-..|.|++||..-+                           .+...+..|.++|..++|+|+ ..+
T Consensus        14 glsFHP~rPwILtslHsG~IQlWDYRM~---------------------------tli~rFdeHdGpVRgv~FH~~-qpl   65 (1202)
T KOG0292|consen   14 GLSFHPKRPWILTSLHSGVIQLWDYRMG---------------------------TLIDRFDEHDGPVRGVDFHPT-QPL   65 (1202)
T ss_pred             ceecCCCCCEEEEeecCceeeeehhhhh---------------------------hHHhhhhccCCccceeeecCC-CCe
Confidence            3467999999999999999999999643                           344467789999999999999 679


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  217 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  217 (358)
                      +++|+.|-.|++|+.++.+++.++.+|-+.|+.+.|++.- ..+++++.|-+|++|+..+.+++....+|...|.|..|+
T Consensus        66 FVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh  144 (1202)
T KOG0292|consen   66 FVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH  144 (1202)
T ss_pred             EEecCCccEEEEEecccceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence            9999999999999999999999999999999999999998 799999999999999999999999999999999999999


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCC--------------------CCCccEEEeecCCceeEEEecCCCCcEEE
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDST--------------------SQQSSFTLHAHDKAVCTISYNPLVPNLLA  277 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~--------------------~~~~~~~~~~~~~~i~~i~~~~~~~~~l~  277 (358)
                      |. +.++++++-|.+|++||+...+.....+                    .....+.+.+|+..|+-++|+|.- .+++
T Consensus       145 pt-EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliV  222 (1202)
T KOG0292|consen  145 PT-EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIV  222 (1202)
T ss_pred             Cc-cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEE
Confidence            94 5599999999999999997654322111                    112235578999999999999987 7999


Q ss_pred             EEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          278 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       278 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      +|++|..|++|.+...+...+-+..+|.+.|.++-|+|... ++++.|.|++|+|||+...+.+..+
T Consensus       223 SG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt~v~tf  288 (1202)
T KOG0292|consen  223 SGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRTSVQTF  288 (1202)
T ss_pred             ecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccccceeee
Confidence            99999999999999887666777889999999999999877 6889999999999999988777654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-34  Score=231.44  Aligned_cols=281  Identities=22%  Similarity=0.302  Sum_probs=223.8

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      |.|+|..+.=++..+.-     .+.+|+.......+.+..-+...           +++.|-.||++||+|...|.|+||
T Consensus        32 l~fsp~~P~d~aVt~S~-----rvqly~~~~~~~~k~~srFk~~v-----------~s~~fR~DG~LlaaGD~sG~V~vf   95 (487)
T KOG0310|consen   32 LCFSPKHPYDFAVTSSV-----RVQLYSSVTRSVRKTFSRFKDVV-----------YSVDFRSDGRLLAAGDESGHVKVF   95 (487)
T ss_pred             EecCCCCCCceEEeccc-----EEEEEecchhhhhhhHHhhccce-----------eEEEeecCCeEEEccCCcCcEEEe
Confidence            46788766544443333     77777776532222222111111           245567899999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      |..+                           ......+.+|+.+|..+.|+|.++.++++|+.|+.+++||+.+......
T Consensus        96 D~k~---------------------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~  148 (487)
T KOG0310|consen   96 DMKS---------------------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE  148 (487)
T ss_pred             cccc---------------------------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE
Confidence            9643                           4445577789999999999999999999999999999999999987778


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      +.+|++.|.|.+|+|..+.++++|+.||.|++||++..........|..+|..+.+-|.+ .++++++ .+.+++||+-+
T Consensus       149 l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsg-s~iasAg-Gn~vkVWDl~~  226 (487)
T KOG0310|consen  149 LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSG-SLIASAG-GNSVKVWDLTT  226 (487)
T ss_pred             ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCC-CEEEEcC-CCeEEEEEecC
Confidence            999999999999999887899999999999999999987666678899999999999954 4666654 56899999997


Q ss_pred             CCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeE
Q 018293          241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFV  320 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  320 (358)
                      +        .+.+..+..|...|+|+++..++ ..|++|+-|+.+++||+.+.+.  +..+ ...++|.+++.+|+++. 
T Consensus       227 G--------~qll~~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~Kv--v~s~-~~~~pvLsiavs~dd~t-  293 (487)
T KOG0310|consen  227 G--------GQLLTSMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYKV--VHSW-KYPGPVLSIAVSPDDQT-  293 (487)
T ss_pred             C--------ceehhhhhcccceEEEEEeecCC-ceEeecccccceEEEEccceEE--EEee-ecccceeeEEecCCCce-
Confidence            7        36666666799999999999988 8999999999999999877763  3333 24588999999999995 


Q ss_pred             EEEEccCCeEEEEEccCCC
Q 018293          321 LAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       321 l~~~~~dg~i~vw~~~~~~  339 (358)
                      ++.|-.||.+.+-+...++
T Consensus       294 ~viGmsnGlv~~rr~~~k~  312 (487)
T KOG0310|consen  294 VVIGMSNGLVSIRRREVKK  312 (487)
T ss_pred             EEEecccceeeeehhhccc
Confidence            8889999988777554433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.4e-33  Score=260.54  Aligned_cols=250  Identities=21%  Similarity=0.313  Sum_probs=202.0

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      +++|+|+|++||+|+.|+.|+||++........                   ........+ .+...|.+++|++..+.+
T Consensus       488 ~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-------------------~~~~~~~~~-~~~~~v~~l~~~~~~~~~  547 (793)
T PLN00181        488 AIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-------------------DIHYPVVEL-ASRSKLSGICWNSYIKSQ  547 (793)
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCccccccc-------------------ccccceEEe-cccCceeeEEeccCCCCE
Confidence            345599999999999999999999853210000                   000011112 234679999999865779


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  217 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  217 (358)
                      |++++.||+|++||+.+++.+..+.+|...|++++|+|.++.+|++++.||.|++||++++...... .....+.++.|+
T Consensus       548 las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-~~~~~v~~v~~~  626 (793)
T PLN00181        548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI-KTKANICCVQFP  626 (793)
T ss_pred             EEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE-ecCCCeEEEEEe
Confidence            9999999999999999999999999999999999999854489999999999999999887665433 344678999997


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC---
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ---  294 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~---  294 (358)
                      +.++..+++|+.||.|++||+++..        .....+.+|...|.++.|. ++ .+|++++.|+.|++||++...   
T Consensus       627 ~~~g~~latgs~dg~I~iwD~~~~~--------~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~  696 (793)
T PLN00181        627 SESGRSLAFGSADHKVYYYDLRNPK--------LPLCTMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGI  696 (793)
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCC--------ccceEecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCcccc
Confidence            7677899999999999999998752        3566778899999999997 44 789999999999999997531   


Q ss_pred             -ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          295 -PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       295 -~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                       ...+..+.+|...+..++|+|++. +|++|+.||.|++|+.....
T Consensus       697 ~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~  741 (793)
T PLN00181        697 NETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPM  741 (793)
T ss_pred             CCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCC
Confidence             124667888999999999999999 59999999999999987654

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=7.5e-33  Score=239.00  Aligned_cols=255  Identities=18%  Similarity=0.201  Sum_probs=192.6

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      ++++..+++++.+.....|+...+..+.+...              .++.......+.+|.+.|++++|+|.++++|++|
T Consensus        29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~--------------~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSg   94 (493)
T PTZ00421         29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTD--------------YGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTA   94 (493)
T ss_pred             cCCCCCcEeECCceEEEEEecCCceEEeeccc--------------cccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEE
Confidence            56767778888788888887654322111100              0111111234678999999999999436799999


Q ss_pred             EcCCeEEEEECCCC-------ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeE
Q 018293          142 SADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  214 (358)
Q Consensus       142 ~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  214 (358)
                      +.|++|++||+.++       +++..+.+|...|.+++|+|++.++|++++.|+.|++||+++++.......|...|.++
T Consensus        95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl  174 (493)
T PTZ00421         95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL  174 (493)
T ss_pred             eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence            99999999999765       34677889999999999999876799999999999999999887766566688899999


Q ss_pred             EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCc-eeEEEecCCCCcEEEEEe----CCCcEEEEe
Q 018293          215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA-VCTISYNPLVPNLLATGS----TDKMVKLWD  289 (358)
Q Consensus       215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~~l~~~~----~dg~i~i~d  289 (358)
                      +|+|+ +.++++++.|+.|++||++++         ..+..+..|.+. ...+.|.+++ ..+++++    .|+.|++||
T Consensus       175 a~spd-G~lLatgs~Dg~IrIwD~rsg---------~~v~tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWD  243 (493)
T PTZ00421        175 EWNLD-GSLLCTTSKDKKLNIIDPRDG---------TIVSSVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWD  243 (493)
T ss_pred             EEECC-CCEEEEecCCCEEEEEECCCC---------cEEEEEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEe
Confidence            99995 568999999999999999987         667778888764 4567889887 5555543    478999999


Q ss_pred             cCCCCceeeEecC-CCCceeEEEEEcCCCCeEEEEEc-cCCeEEEEEccCCCcccc
Q 018293          290 LSNNQPSCIASRN-PKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       290 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~  343 (358)
                      +++... ...... .+...+....|++++.. |++++ .|+.|++||+.+++.+..
T Consensus       244 lr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~-L~lggkgDg~Iriwdl~~~~~~~~  297 (493)
T PTZ00421        244 TRKMAS-PYSTVDLDQSSALFIPFFDEDTNL-LYIGSKGEGNIRCFELMNERLTFC  297 (493)
T ss_pred             CCCCCC-ceeEeccCCCCceEEEEEcCCCCE-EEEEEeCCCeEEEEEeeCCceEEE
Confidence            987653 222222 23345666789999995 55555 699999999998876543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=8.5e-33  Score=224.58  Aligned_cols=284  Identities=19%  Similarity=0.319  Sum_probs=223.5

Q ss_pred             cCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcc
Q 018293            4 NPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD   83 (358)
Q Consensus         4 ~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~   83 (358)
                      .|.++.++.....      .+.+-+........+|..|.....    -       .+|||.|.|+|+|...|.|||||..
T Consensus        27 dpkgd~ilY~nGk------sv~ir~i~~~~~~~iYtEH~~~vt----V-------AkySPsG~yiASGD~sG~vRIWdtt   89 (603)
T KOG0318|consen   27 DPKGDNILYTNGK------SVIIRNIDNPASVDIYTEHAHQVT----V-------AKYSPSGFYIASGDVSGKVRIWDTT   89 (603)
T ss_pred             CCCCCeEEEeCCC------EEEEEECCCccceeeeccccceeE----E-------EEeCCCceEEeecCCcCcEEEEecc
Confidence            4666666666332      566666666655677777743331    1       2459999999999999999999985


Q ss_pred             cccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE-EcCCeEEEEECCCCceeeeec
Q 018293           84 VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA-SADKQVKIWDVAAGKCNLTLE  162 (358)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~  162 (358)
                      ..                         ..-++..++.-.++|..|+|++++.++.|+| +.+...+++-.++|..+..+.
T Consensus        90 ~~-------------------------~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~  144 (603)
T KOG0318|consen   90 QK-------------------------EHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEIT  144 (603)
T ss_pred             Cc-------------------------ceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceee
Confidence            31                         2223334555678999999999955444444 223334444445788899999


Q ss_pred             ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCC
Q 018293          163 HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK  242 (358)
Q Consensus       163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~  242 (358)
                      +|...|.++.|-|..+..+++++.|+++.+|+---.+.......|...|.++.|+|+ +.+|++.+.||.+.+||=.++ 
T Consensus       145 GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyDGktg-  222 (603)
T KOG0318|consen  145 GHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYDGKTG-  222 (603)
T ss_pred             ccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCC-CCeEEEecCCccEEEEcCCCc-
Confidence            999999999999999999999999999999987665655656678889999999997 559999999999999999998 


Q ss_pred             CCCCCCCCCccEEEe---ecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce-----------------------
Q 018293          243 SDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS-----------------------  296 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------------------  296 (358)
                              ..+..+.   +|.+.|.++.|+||+ ..+++++.|.+++|||+.+.+..                       
T Consensus       223 --------e~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l  293 (603)
T KOG0318|consen  223 --------EKVGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL  293 (603)
T ss_pred             --------cEEEEecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence                    6666776   899999999999998 89999999999999999775321                       


Q ss_pred             ------------------eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          297 ------------------CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       297 ------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                                        ....+.+|...|+++..+|++.+ |.+|+.||.|.-|+..++..-
T Consensus       294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~-i~SgsyDG~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT-IYSGSYDGHINSWDSGSGTSD  355 (603)
T ss_pred             EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE-EEeeccCceEEEEecCCcccc
Confidence                              23345678889999999999996 889999999999999887754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.9e-34  Score=221.33  Aligned_cols=281  Identities=16%  Similarity=0.284  Sum_probs=229.4

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCC-CCCceEeec-eeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHH-HIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI   79 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v   79 (358)
                      .|+|+|+.|++|+.+   +.+++|.|-.+.- +........ -..+....+|+.+       |.|...||+|+.||.|+|
T Consensus       220 ~FSPDgqyLvsgSvD---GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F-------SRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  220 RFSPDGQYLVSGSVD---GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF-------SRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             eeCCCCceEeecccc---ceeeeehhccchhhhhhhhhhhcceeecccceEEEee-------cccHHHhhccCcCCcEEE
Confidence            489999999999777   5666665554331 111111111 1334455556654       899999999999999999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  159 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  159 (358)
                      |.+.++++++.+                          -..|+..|+|+.|+.+ +..+++++.|.++++.-+++|+++.
T Consensus       290 Wri~tG~ClRrF--------------------------drAHtkGvt~l~FSrD-~SqiLS~sfD~tvRiHGlKSGK~LK  342 (508)
T KOG0275|consen  290 WRIETGQCLRRF--------------------------DRAHTKGVTCLSFSRD-NSQILSASFDQTVRIHGLKSGKCLK  342 (508)
T ss_pred             EEEecchHHHHh--------------------------hhhhccCeeEEEEccC-cchhhcccccceEEEeccccchhHH
Confidence            999998887642                          2269999999999999 5688899999999999999999999


Q ss_pred             eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee--eecCCeeeEEEcCCCCCeEEEEecCCeEEEEE
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVVSLEDGTIKGFD  237 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d  237 (358)
                      .+++|.+.|+...|.++| ..+++++.||+|++|+..+.++.....  +...+|..+..-|.++..++++...+++++.+
T Consensus       343 EfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn  421 (508)
T KOG0275|consen  343 EFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN  421 (508)
T ss_pred             HhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence            999999999999999999 899999999999999999988876443  34567899999998888999999999999999


Q ss_pred             cccCCCCCCCCCCCccEEEee---cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEc
Q 018293          238 IRTAKSDPDSTSQQSSFTLHA---HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS  314 (358)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  314 (358)
                      +..          +.+..+..   ..+...+.+.+|.| .++++.++|+.++.|...+++  ....+..|...+..++-+
T Consensus       422 ~qG----------QvVrsfsSGkREgGdFi~~~lSpkG-ewiYcigED~vlYCF~~~sG~--LE~tl~VhEkdvIGl~HH  488 (508)
T KOG0275|consen  422 MQG----------QVVRSFSSGKREGGDFINAILSPKG-EWIYCIGEDGVLYCFSVLSGK--LERTLPVHEKDVIGLTHH  488 (508)
T ss_pred             ccc----------eEEeeeccCCccCCceEEEEecCCC-cEEEEEccCcEEEEEEeecCc--eeeeeecccccccccccC
Confidence            874          44555433   23556777899998 899999999999999999998  455667788889999999


Q ss_pred             CCCCeEEEEEccCCeEEEEE
Q 018293          315 EDSPFVLAIGGSKGKLEIWD  334 (358)
Q Consensus       315 ~~~~~~l~~~~~dg~i~vw~  334 (358)
                      |..+ ++|+-+.||.+++|.
T Consensus       489 PHqN-llAsYsEDgllKLWk  507 (508)
T KOG0275|consen  489 PHQN-LLASYSEDGLLKLWK  507 (508)
T ss_pred             cccc-hhhhhcccchhhhcC
Confidence            9887 799999999999995

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=4.8e-33  Score=207.08  Aligned_cols=246  Identities=23%  Similarity=0.425  Sum_probs=211.7

Q ss_pred             ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      ++|+.+|..|++|+.|+++.+|+++..+                         ........+|.+.|-.++|.|....++
T Consensus        26 v~wn~~g~~lasgs~dktv~v~n~e~~r-------------------------~~~~~~~~gh~~svdql~w~~~~~d~~   80 (313)
T KOG1407|consen   26 VAWNCDGTKLASGSFDKTVSVWNLERDR-------------------------FRKELVYRGHTDSVDQLCWDPKHPDLF   80 (313)
T ss_pred             EEEcccCceeeecccCCceEEEEecchh-------------------------hhhhhcccCCCcchhhheeCCCCCcce
Confidence            3448899999999999999999997532                         222335568999999999999888899


Q ss_pred             EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293          139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  218 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  218 (358)
                      ++++.|.+|++||++.+++...+....+.+ -+.|+|+| .++++++.|..|.+.|.++.+... .......+..++|+.
T Consensus        81 atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~-~~~~~~e~ne~~w~~  157 (313)
T KOG1407|consen   81 ATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDG-EYIAVGNKDDRITFIDARTYKIVN-EEQFKFEVNEISWNN  157 (313)
T ss_pred             EEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCC-CEEEEecCcccEEEEEecccceee-hhcccceeeeeeecC
Confidence            999999999999999999999887555554 48899999 899999999999999999876654 445556788889985


Q ss_pred             CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceee
Q 018293          219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  298 (358)
Q Consensus       219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  298 (358)
                       .+++|+.....|.|.|......         +++..+.+|.....||.|+|+| +++++|+.|-.+.+||+...-  +.
T Consensus       158 -~nd~Fflt~GlG~v~ILsypsL---------kpv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELi--C~  224 (313)
T KOG1407|consen  158 -SNDLFFLTNGLGCVEILSYPSL---------KPVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELI--CE  224 (313)
T ss_pred             -CCCEEEEecCCceEEEEecccc---------ccccccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhh--hh
Confidence             5667877778899999998876         8899999999999999999999 999999999999999998654  88


Q ss_pred             EecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293          299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                      ..+..+.-+|..+.|+.+|+ +||+|++|..|-|=++++|..+.+.-.
T Consensus       225 R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd~~~eI~~  271 (313)
T KOG1407|consen  225 RCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGDRVWEIPC  271 (313)
T ss_pred             eeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCCeEEEeec
Confidence            88889999999999999999 599999999999999999888766443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4e-34  Score=229.96  Aligned_cols=247  Identities=18%  Similarity=0.249  Sum_probs=205.5

Q ss_pred             cC-CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           62 RE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        62 s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      .| .+.+|++|+.|+.|+||++..                          ...+++.+.+|..+|.+++|+.+ +..+++
T Consensus       223 fp~~~hLlLS~gmD~~vklW~vy~--------------------------~~~~lrtf~gH~k~Vrd~~~s~~-g~~fLS  275 (503)
T KOG0282|consen  223 FPKKGHLLLSGGMDGLVKLWNVYD--------------------------DRRCLRTFKGHRKPVRDASFNNC-GTSFLS  275 (503)
T ss_pred             ccceeeEEEecCCCceEEEEEEec--------------------------Ccceehhhhcchhhhhhhhcccc-CCeeee
Confidence            45 789999999999999999963                          35556678899999999999999 668999


Q ss_pred             EEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC
Q 018293          141 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  220 (358)
Q Consensus       141 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  220 (358)
                      ++.|+.+++||+++|+++..+. ....++|+.|+|++.+.+++|+.|+.|+.||+++++.+.....|-+.|..+.|-++ 
T Consensus       276 ~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~-  353 (503)
T KOG0282|consen  276 ASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE-  353 (503)
T ss_pred             eecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC-
Confidence            9999999999999999999997 45778999999999899999999999999999999988877788899999999995 


Q ss_pred             CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc-eeeE
Q 018293          221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIA  299 (358)
Q Consensus       221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~  299 (358)
                      +..+++.++|+++++|+.+..-        ........+.....++..+|++ .++++-+.|..|.+|.+...-+ ....
T Consensus       354 g~rFissSDdks~riWe~~~~v--------~ik~i~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~nkkK  424 (503)
T KOG0282|consen  354 GRRFISSSDDKSVRIWENRIPV--------PIKNIADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRLNKKK  424 (503)
T ss_pred             CceEeeeccCccEEEEEcCCCc--------cchhhcchhhccCcceecCCCC-CeehhhccCceEEEEecccccccCHhh
Confidence            5689999999999999999862        1122222333456789999998 8999999999999999754321 1233


Q ss_pred             ecCCC--CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293          300 SRNPK--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       300 ~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                      .+.+|  .+--..+.|||||++ |++|+.||.+.+||.++-+.+...-.+
T Consensus       425 ~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt~kl~~~lkah  473 (503)
T KOG0282|consen  425 RFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKTTKLVSKLKAH  473 (503)
T ss_pred             hhcceeccCceeeEEEcCCCCe-EEeecCCccEEEeechhhhhhhccccC
Confidence            45566  344567899999995 999999999999999998877665544

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.7e-34  Score=218.75  Aligned_cols=256  Identities=19%  Similarity=0.293  Sum_probs=212.5

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      +..|||||+||++|+.||.|.+|+..++.......                   ...--.+.-+..+|.|+.|+.+ ..+
T Consensus       218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk-------------------YQAqd~fMMmd~aVlci~FSRD-sEM  277 (508)
T KOG0275|consen  218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK-------------------YQAQDNFMMMDDAVLCISFSRD-SEM  277 (508)
T ss_pred             heeeCCCCceEeeccccceeeeehhccchhhhhhh-------------------hhhhcceeecccceEEEeeccc-HHH
Confidence            34579999999999999999999998765433211                   1111233457899999999999 779


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeec-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEE
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW  216 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  216 (358)
                      +|+|+.||.|++|.+++|.+++.|. .|...|+|+.|+.|+ ..+++++.|.++++.-+..++......+|.+.|+.+.|
T Consensus       278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f  356 (508)
T KOG0275|consen  278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF  356 (508)
T ss_pred             hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccccccceEE
Confidence            9999999999999999999999996 899999999999999 77999999999999999999999989999999999999


Q ss_pred             cCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE--eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293          217 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL--HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~  294 (358)
                      .++ +..+++++.||+|++|+.++.         .++..+  .+...+|+++-.-|.++..++++...++++|-++...-
T Consensus       357 t~d-G~~iisaSsDgtvkvW~~Ktt---------eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv  426 (508)
T KOG0275|consen  357 TDD-GHHIISASSDGTVKVWHGKTT---------ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV  426 (508)
T ss_pred             cCC-CCeEEEecCCccEEEecCcch---------hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE
Confidence            995 458999999999999999987         444443  34567899999999888899999999999999987543


Q ss_pred             ceeeEecC---CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293          295 PSCIASRN---PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       295 ~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                         +..+.   ...+...+.+.+|.|.+ +.+.+.|+.++.|.+.+|+.-.....+.
T Consensus       427 ---VrsfsSGkREgGdFi~~~lSpkGew-iYcigED~vlYCF~~~sG~LE~tl~VhE  479 (508)
T KOG0275|consen  427 ---VRSFSSGKREGGDFINAILSPKGEW-IYCIGEDGVLYCFSVLSGKLERTLPVHE  479 (508)
T ss_pred             ---EeeeccCCccCCceEEEEecCCCcE-EEEEccCcEEEEEEeecCceeeeeeccc
Confidence               33332   23456677889999996 7778999999999999998766555443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=5.1e-33  Score=207.64  Aligned_cols=237  Identities=22%  Similarity=0.299  Sum_probs=198.6

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      +++.+|.+|.+++.|.++.||-...++.+.                           .+.||++.|+|++.+.+ ...++
T Consensus        17 KyN~eGDLlFscaKD~~~~vw~s~nGerlG---------------------------ty~GHtGavW~~Did~~-s~~li   68 (327)
T KOG0643|consen   17 KYNREGDLLFSCAKDSTPTVWYSLNGERLG---------------------------TYDGHTGAVWCCDIDWD-SKHLI   68 (327)
T ss_pred             EecCCCcEEEEecCCCCceEEEecCCceee---------------------------eecCCCceEEEEEecCC-cceee
Confidence            348999999999999999999876554433                           56799999999999988 67999


Q ss_pred             EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEe-----CCCcEEEEEcccC-------CCccceeee
Q 018293          140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-----FDRSVVMKDARIS-------THSGFKWAV  207 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~-------~~~~~~~~~  207 (358)
                      +|+.|.++++||+++|+++..++ ...+|..+.|+++| ++++.+.     ..+.|.++|++..       ++......+
T Consensus        69 TGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~  146 (327)
T KOG0643|consen   69 TGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP  146 (327)
T ss_pred             eccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence            99999999999999999999998 56889999999999 6555554     3567999999843       334444556


Q ss_pred             cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEE
Q 018293          208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL  287 (358)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i  287 (358)
                      .+.++.+-|.|- +..+++|.+||.|..||++++        ...+.....|...|+.++++|+. .++++++.|.+-++
T Consensus       147 ~skit~a~Wg~l-~~~ii~Ghe~G~is~~da~~g--------~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl  216 (327)
T KOG0643|consen  147 DSKITSALWGPL-GETIIAGHEDGSISIYDARTG--------KELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKL  216 (327)
T ss_pred             ccceeeeeeccc-CCEEEEecCCCcEEEEEcccC--------ceeeechhhhccccccccccCCc-ceEEecccCcccee
Confidence            788999999995 559999999999999999997        35666778899999999999998 99999999999999


Q ss_pred             EecCCCCce-----------------------------------------------------eeEecCCCCceeEEEEEc
Q 018293          288 WDLSNNQPS-----------------------------------------------------CIASRNPKAGAVFSVAFS  314 (358)
Q Consensus       288 ~d~~~~~~~-----------------------------------------------------~~~~~~~~~~~v~~~~~~  314 (358)
                      ||+++.+.+                                                     .+....+|-++|++++|+
T Consensus       217 ~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh  296 (327)
T KOG0643|consen  217 VDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH  296 (327)
T ss_pred             eeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence            998763211                                                     223346788999999999


Q ss_pred             CCCCeEEEEEccCCeEEEEEccC
Q 018293          315 EDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       315 ~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      |+|. .+++|+.||.|++.....
T Consensus       297 PdGk-sYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  297 PDGK-SYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             CCCc-ccccCCCCceEEEEEecc
Confidence            9999 599999999999987654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.4e-32  Score=223.75  Aligned_cols=241  Identities=32%  Similarity=0.492  Sum_probs=204.6

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      +|++++|++++.||.|++|++.+.+.                           ...+..|...+..+.|+|+ +++++++
T Consensus        18 ~~~~~~l~~~~~~g~i~i~~~~~~~~---------------------------~~~~~~~~~~i~~~~~~~~-~~~l~~~   69 (289)
T cd00200          18 SPDGKLLATGSGDGTIKVWDLETGEL---------------------------LRTLKGHTGPVRDVAASAD-GTYLASG   69 (289)
T ss_pred             cCCCCEEEEeecCcEEEEEEeeCCCc---------------------------EEEEecCCcceeEEEECCC-CCEEEEE
Confidence            88999999999999999999975432                           2234468889999999999 5789999


Q ss_pred             EcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCC
Q 018293          142 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  221 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  221 (358)
                      +.||.|++||+.+++.+..+..|...+.++.|++++ .++++++.++.+.+||+++.+.......+...+.+++|+|+ +
T Consensus        70 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~  147 (289)
T cd00200          70 SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD-G  147 (289)
T ss_pred             cCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc-C
Confidence            999999999999888888888898899999999996 78888888999999999977665555567788999999996 5


Q ss_pred             CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec
Q 018293          222 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR  301 (358)
Q Consensus       222 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  301 (358)
                      .++++++.+|.|++||++..         +....+..|...+.++.|+|++ ..+++++.|+.|++||++.++  ....+
T Consensus       148 ~~l~~~~~~~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~--~~~~~  215 (289)
T cd00200         148 TFVASSSQDGTIKLWDLRTG---------KCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK--CLGTL  215 (289)
T ss_pred             CEEEEEcCCCcEEEEEcccc---------ccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCc--eecch
Confidence            57777777999999999876         5667777888899999999988 788888889999999999876  45556


Q ss_pred             CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       302 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      ..|...+.++.|+|++. ++++++.||.|++|++.+++.+....
T Consensus       216 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~~~~~~~~  258 (289)
T cd00200         216 RGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECVQTLS  258 (289)
T ss_pred             hhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCceeEEEcc
Confidence            57888999999999977 57777779999999999877665544

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=9.5e-32  Score=233.23  Aligned_cols=229  Identities=22%  Similarity=0.304  Sum_probs=178.5

Q ss_pred             cCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEE
Q 018293           71 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  150 (358)
Q Consensus        71 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  150 (358)
                      |+.++.|++|+...                           ......+.+|.+.|.+++|+|+.+.+|++|+.|++|++|
T Consensus        50 GG~~gvI~L~~~~r---------------------------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIW  102 (568)
T PTZ00420         50 GGLIGAIRLENQMR---------------------------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVW  102 (568)
T ss_pred             CCceeEEEeeecCC---------------------------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Confidence            66778888888752                           123345678999999999999766799999999999999


Q ss_pred             ECCCCc--------eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCC
Q 018293          151 DVAAGK--------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  222 (358)
Q Consensus       151 d~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  222 (358)
                      |+.++.        ++..+.+|...|.+++|+|++..++++++.|+.|++||+++++... ...+...|.+++|+|+ +.
T Consensus       103 Di~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~-~i~~~~~V~Slswspd-G~  180 (568)
T PTZ00420        103 EIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF-QINMPKKLSSLKWNIK-GN  180 (568)
T ss_pred             ECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE-EEecCCcEEEEEECCC-CC
Confidence            997642        3446788999999999999985567899999999999999877544 2345678999999996 45


Q ss_pred             eEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEE-----EecCCCCcEEEEEeCCC----cEEEEecCC-
Q 018293          223 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI-----SYNPLVPNLLATGSTDK----MVKLWDLSN-  292 (358)
Q Consensus       223 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i-----~~~~~~~~~l~~~~~dg----~i~i~d~~~-  292 (358)
                      ++++++.|+.|++||++++         ..+..+.+|.+.+.+.     .|++++ .+|++++.|+    .|+|||++. 
T Consensus       181 lLat~s~D~~IrIwD~Rsg---------~~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~  250 (568)
T PTZ00420        181 LLSGTCVGKHMHIIDPRKQ---------EIASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNT  250 (568)
T ss_pred             EEEEEecCCEEEEEECCCC---------cEEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCC
Confidence            8888999999999999987         6677888888765433     345776 6788877664    799999995 


Q ss_pred             CCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          293 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       293 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      .++.....+..+.+.+......++|. ++++|+.|+.|++|++..+.
T Consensus       251 ~~pl~~~~ld~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        251 TSALVTMSIDNASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             CCceEEEEecCCccceEEeeeCCCCC-EEEEEECCCeEEEEEccCCc
Confidence            45544445555555555454555677 68899999999999998764

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-30  Score=190.50  Aligned_cols=290  Identities=19%  Similarity=0.266  Sum_probs=222.2

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCC--------CC-CceEeeceeecCCcccceeeecCCccccCCCceEEec
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDG--------GD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG   71 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g   71 (358)
                      ++|+|+|.+.++|.+.   ..++++.|..--+        .. |.+....+......+.|..|       ||+|+++|+|
T Consensus        38 v~fhp~g~lyavgsns---kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w-------s~~geliatg  107 (350)
T KOG0641|consen   38 VAFHPAGGLYAVGSNS---KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW-------SPCGELIATG  107 (350)
T ss_pred             EEecCCCceEEeccCC---ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe-------cCccCeEEec
Confidence            4799999999999766   5667776654221        11 23333333333445567777       8999999999


Q ss_pred             CCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC---CCcEEEEEE-cCCeE
Q 018293           72 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---FRNILASAS-ADKQV  147 (358)
Q Consensus        72 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~~-~dg~v  147 (358)
                      +.|.+|++.-++...+..                      ......+.-|.+.|..++|-.+   ++.+|++++ .|..|
T Consensus       108 sndk~ik~l~fn~dt~~~----------------------~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i  165 (350)
T KOG0641|consen  108 SNDKTIKVLPFNADTCNA----------------------TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI  165 (350)
T ss_pred             CCCceEEEEecccccccc----------------------cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence            999999998776422211                      2222345569999999999533   455777765 46778


Q ss_pred             EEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee-------ecCCeeeEEEcCCC
Q 018293          148 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-------VAADVESLAWDPHA  220 (358)
Q Consensus       148 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~i~~~~~~~~~  220 (358)
                      .+-|..+|+..+.+.+|.+.|.++- +-++ .++++|+.|.+|++||++-...+.....       ..+.|.+++..| .
T Consensus       166 y~tdc~~g~~~~a~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-s  242 (350)
T KOG0641|consen  166 YITDCGRGQGFHALSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-S  242 (350)
T ss_pred             EEeecCCCCcceeecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-C
Confidence            8888889999999999999998763 2234 7899999999999999997765543221       235689999999 4


Q ss_pred             CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC--Cceee
Q 018293          221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN--QPSCI  298 (358)
Q Consensus       221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~  298 (358)
                      ++++++|-.|....+||++.+         +.++.+..|...|.++.|+|.. .++++++.|..|++-|++..  ....+
T Consensus       243 grll~sg~~dssc~lydirg~---------r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~  312 (350)
T KOG0641|consen  243 GRLLASGHADSSCMLYDIRGG---------RMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPI  312 (350)
T ss_pred             cceeeeccCCCceEEEEeeCC---------ceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCce
Confidence            569999999999999999998         8899999999999999999976 89999999999999999763  22344


Q ss_pred             EecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      .....|...+..+.|+|..- -+++.+.|.++.+|-+.
T Consensus       313 ~vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  313 MVVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALN  349 (350)
T ss_pred             EEEEeccCceEEEEecCccc-eeeeccCcceEEEeccC
Confidence            55567888899999999886 48889999999999764

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=8.7e-31  Score=226.24  Aligned_cols=225  Identities=21%  Similarity=0.253  Sum_probs=173.2

Q ss_pred             cC-CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           62 RE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        62 s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      +| ++++|++|+.||+|++||+.+.....                    ........+.+|...|.+++|+|++.++|++
T Consensus        84 sP~d~~~LaSgS~DgtIkIWdi~~~~~~~--------------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS  143 (493)
T PTZ00421         84 NPFDPQKLFTASEDGTIMGWGIPEEGLTQ--------------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLAS  143 (493)
T ss_pred             cCCCCCEEEEEeCCCEEEEEecCCCcccc--------------------ccCcceEEecCCCCcEEEEEeCcCCCCEEEE
Confidence            77 78899999999999999997532211                    0112344667899999999999986679999


Q ss_pred             EEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCC-eeeEEEcCC
Q 018293          141 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD-VESLAWDPH  219 (358)
Q Consensus       141 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~  219 (358)
                      |+.|++|++||+++++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.......|... ...+.|.++
T Consensus       144 gs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~  222 (493)
T PTZ00421        144 AGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR  222 (493)
T ss_pred             EeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC
Confidence            9999999999999999999999999999999999999 89999999999999999988766555555543 456788886


Q ss_pred             CCCeEEEE---ecCCeEEEEEcccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcEEEEEe-CCCcEEEEecCCCC
Q 018293          220 AEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQ  294 (358)
Q Consensus       220 ~~~~~~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~d~~~~~  294 (358)
                      ++.++.+|   +.|+.|++||+++..        .+......+ ...+....|++++ ++|++++ .|+.|++||+.+++
T Consensus       223 ~~~ivt~G~s~s~Dr~VklWDlr~~~--------~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        223 KDLIITLGCSKSQQRQIMLWDTRKMA--------SPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             CCeEEEEecCCCCCCeEEEEeCCCCC--------CceeEeccCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCCc
Confidence            65444444   247999999998762        233333323 3455667789988 7777776 59999999999987


Q ss_pred             ceeeEecCCCCceeEEEEEcCCC
Q 018293          295 PSCIASRNPKAGAVFSVAFSEDS  317 (358)
Q Consensus       295 ~~~~~~~~~~~~~v~~~~~~~~~  317 (358)
                      +.....+ .+..++..++|.|..
T Consensus       294 ~~~~~~~-~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        294 LTFCSSY-SSVEPHKGLCMMPKW  315 (493)
T ss_pred             eEEEeec-cCCCCCcceEecccc
Confidence            5443332 245677888998864

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.5e-31  Score=226.12  Aligned_cols=276  Identities=18%  Similarity=0.293  Sum_probs=224.6

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      +++.+.-+++.|.++      .+.+|+....+  .+...    ...+.+|..+       -|.++++++|...|.+.+||
T Consensus       380 ~vS~d~~~~~Sga~~------SikiWn~~t~k--ciRTi----~~~y~l~~~F-------vpgd~~Iv~G~k~Gel~vfd  440 (888)
T KOG0306|consen  380 CVSSDSILLASGAGE------SIKIWNRDTLK--CIRTI----TCGYILASKF-------VPGDRYIVLGTKNGELQVFD  440 (888)
T ss_pred             EeecCceeeeecCCC------cEEEEEccCcc--eeEEe----ccccEEEEEe-------cCCCceEEEeccCCceEEEE
Confidence            455555555555333      56666665421  11111    1224445554       47899999999999999999


Q ss_pred             cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC-----Cc
Q 018293           82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-----GK  156 (358)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-----~~  156 (358)
                      +.+...+.                           ...+|.+.|+.++.+|+ +..+++|+.|.+|++||..-     +.
T Consensus       441 laS~~l~E---------------------------ti~AHdgaIWsi~~~pD-~~g~vT~saDktVkfWdf~l~~~~~gt  492 (888)
T KOG0306|consen  441 LASASLVE---------------------------TIRAHDGAIWSISLSPD-NKGFVTGSADKTVKFWDFKLVVSVPGT  492 (888)
T ss_pred             eehhhhhh---------------------------hhhccccceeeeeecCC-CCceEEecCCcEEEEEeEEEEeccCcc
Confidence            97654443                           34479999999999999 67899999999999999741     11


Q ss_pred             ee--------eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEe
Q 018293          157 CN--------LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL  228 (358)
Q Consensus       157 ~~--------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  228 (358)
                      ..        ++++ .++.|.|+.++||+ .+++++--|+++++|-+.+.+....+.+|.-+|.|+..+|+ ..++++|+
T Consensus       493 ~~k~lsl~~~rtLe-l~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D-SklivTgS  569 (888)
T KOG0306|consen  493 QKKVLSLKHTRTLE-LEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD-SKLIVTGS  569 (888)
T ss_pred             cceeeeeccceEEe-ccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC-cCeEEecc
Confidence            11        1222 45789999999999 99999999999999999999888888999999999999995 56999999


Q ss_pred             cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCcee
Q 018293          229 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV  308 (358)
Q Consensus       229 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v  308 (358)
                      .|.+|++|-+.-+         .+-.++.+|+..|.++.|.|.. .++.+++.|+.|+-||-..-+  .++.+.+|...|
T Consensus       570 ADKnVKiWGLdFG---------DCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe--~iq~L~~H~~ev  637 (888)
T KOG0306|consen  570 ADKNVKIWGLDFG---------DCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFE--EIQKLDGHHSEV  637 (888)
T ss_pred             CCCceEEeccccc---------hhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhh--hheeeccchhee
Confidence            9999999999987         7888999999999999999976 899999999999999988766  688899999999


Q ss_pred             EEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          309 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       309 ~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      ++++.+|+|.+ +++++.|..|++|.......
T Consensus       638 ~cLav~~~G~~-vvs~shD~sIRlwE~tde~~  668 (888)
T KOG0306|consen  638 WCLAVSPNGSF-VVSSSHDKSIRLWERTDEIL  668 (888)
T ss_pred             eeeEEcCCCCe-EEeccCCceeEeeeccCcce
Confidence            99999999996 88999999999999866443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.1e-31  Score=209.84  Aligned_cols=242  Identities=25%  Similarity=0.365  Sum_probs=200.3

Q ss_pred             CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC--CcEEEEEE
Q 018293           65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF--RNILASAS  142 (358)
Q Consensus        65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~  142 (358)
                      ++.+++|++||.+++||..                            .+....+.||.++|.+++|.-.+  ...|++++
T Consensus       115 ~~~IltgsYDg~~riWd~~----------------------------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas  166 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLK----------------------------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS  166 (423)
T ss_pred             CceEEEeecCCeeEEEecC----------------------------CceEEEEecCCcceeeeEEEecCCccceEEEec
Confidence            7899999999999999985                            34445667899999988884331  23699999


Q ss_pred             cCCeEEEEECCCCce----eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC--------------------
Q 018293          143 ADKQVKIWDVAAGKC----NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--------------------  198 (358)
Q Consensus       143 ~dg~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------------------  198 (358)
                      .|.++++|..+.++.    +...++|...|.++...+++ ..+++|+.|.+|.+|+..+.                    
T Consensus       167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~  245 (423)
T KOG0313|consen  167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREK  245 (423)
T ss_pred             CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhh
Confidence            999999999987643    34446999999999999999 89999999999999993211                    


Q ss_pred             -----CCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC
Q 018293          199 -----THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  273 (358)
Q Consensus       199 -----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  273 (358)
                           .++....+|..+|.++.|++  ...+++++.|.+|+.||+.++         .....+.. ...++++..+|.. 
T Consensus       246 ~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg---------~~~~~~~~-~ksl~~i~~~~~~-  312 (423)
T KOG0313|consen  246 EGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETG---------GLKSTLTT-NKSLNCISYSPLS-  312 (423)
T ss_pred             cccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecc---------cceeeeec-CcceeEeeccccc-
Confidence                 11223456889999999998  448999999999999999998         44444443 5678999999987 


Q ss_pred             cEEEEEeCCCcEEEEecCCCCc-eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC-ccccccccC
Q 018293          274 NLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA-GISNRFSKY  348 (358)
Q Consensus       274 ~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~  348 (358)
                      ++|++|+.|..+++||.+++.- ...+.+.+|.+.|.++.|+|...|+|++|+.|+++++||+++.+ .+..+..|.
T Consensus       313 ~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~  389 (423)
T KOG0313|consen  313 KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHN  389 (423)
T ss_pred             ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCC
Confidence            8999999999999999998653 45667889999999999999999999999999999999999877 777666664

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.2e-31  Score=208.60  Aligned_cols=256  Identities=18%  Similarity=0.272  Sum_probs=204.5

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      +.+|+.+++|||+.|..-.||++.+++...                           .+.+|+..|+++.|+.+ +.+||
T Consensus        71 sl~P~~~l~aTGGgDD~AflW~~~~ge~~~---------------------------eltgHKDSVt~~~Fshd-gtlLA  122 (399)
T KOG0296|consen   71 SLHPNNNLVATGGGDDLAFLWDISTGEFAG---------------------------ELTGHKDSVTCCSFSHD-GTLLA  122 (399)
T ss_pred             EeCCCCceEEecCCCceEEEEEccCCccee---------------------------EecCCCCceEEEEEccC-ceEEE
Confidence            338999999999999999999998766332                           45689999999999999 67999


Q ss_pred             EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293          140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  219 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  219 (358)
                      +|+.+|.|+||+..++.....+...-..+.-+.|+|.+ .+|++|+.||.+-+|.+..........+|..++++=.|.|+
T Consensus       123 TGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd  201 (399)
T KOG0296|consen  123 TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD  201 (399)
T ss_pred             ecCCCccEEEEEcccCceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC
Confidence            99999999999999998888887566778889999988 99999999999999999987766778889999999999997


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCCC----------------------------------CCCccEEEe--------
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDST----------------------------------SQQSSFTLH--------  257 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~----------------------------------~~~~~~~~~--------  257 (358)
                       +..++++..||+|++|++.++.......                                  ..+.+....        
T Consensus       202 -GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~  280 (399)
T KOG0296|consen  202 -GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKP  280 (399)
T ss_pred             -CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccc
Confidence             5589999999999999999875311000                                  001111111        


Q ss_pred             ecCCceeEEEecCCCC--cEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          258 AHDKAVCTISYNPLVP--NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       258 ~~~~~i~~i~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      .+...+.++.+.|...  .+.|+|+.||+|.|||+...+   ++..-.|..+|..+.|.+ ..+ |++++.+|.|+.||.
T Consensus       281 ~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~---~R~~c~he~~V~~l~w~~-t~~-l~t~c~~g~v~~wDa  355 (399)
T KOG0296|consen  281 SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST---LRHICEHEDGVTKLKWLN-TDY-LLTACANGKVRQWDA  355 (399)
T ss_pred             cchhhhhhhhhcccccccchhhcccccceEEEEecccch---hheeccCCCceEEEEEcC-cch-heeeccCceEEeeec
Confidence            1222333444443221  478899999999999999886   334456778899999999 555 778999999999999


Q ss_pred             cCCCccccccccCcC
Q 018293          336 LSDAGISNRFSKYSK  350 (358)
Q Consensus       336 ~~~~~~~~~~~~~~~  350 (358)
                      ++|+++..+.+|...
T Consensus       356 RtG~l~~~y~GH~~~  370 (399)
T KOG0296|consen  356 RTGQLKFTYTGHQMG  370 (399)
T ss_pred             cccceEEEEecCchh
Confidence            999999988888654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-32  Score=202.89  Aligned_cols=277  Identities=19%  Similarity=0.309  Sum_probs=217.6

Q ss_pred             ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEc
Q 018293            3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDL   82 (358)
Q Consensus         3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~   82 (358)
                      +.|+|-.|+.++.++     .--+-+..++.-.-.+..|+..        .|.   ...+.+..+.|+++.|=+-+|||.
T Consensus        25 itp~g~flisa~kd~-----~pmlr~g~tgdwigtfeghkga--------vw~---~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen   25 ITPDGYFLISASKDG-----KPMLRNGDTGDWIGTFEGHKGA--------VWS---ATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             CCCCceEEEEeccCC-----CchhccCCCCCcEEeeeccCcc--------eee---eecCchhhhhhhhcccchhhhhhh
Confidence            457888888887765     2112222222222334444322        231   122456667889999999999999


Q ss_pred             ccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc-eeeee
Q 018293           83 DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTL  161 (358)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~  161 (358)
                      -+++.+..+                            .|+.-|.+++|+.+ .++|++|+.+..++|||++..+ +...+
T Consensus        89 ~tgdelhsf----------------------------~hkhivk~~af~~d-s~~lltgg~ekllrvfdln~p~App~E~  139 (334)
T KOG0278|consen   89 VTGDELHSF----------------------------EHKHIVKAVAFSQD-SNYLLTGGQEKLLRVFDLNRPKAPPKEI  139 (334)
T ss_pred             hhhhhhhhh----------------------------hhhheeeeEEeccc-chhhhccchHHHhhhhhccCCCCCchhh
Confidence            887766532                            48889999999999 7799999999999999998664 57788


Q ss_pred             cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293          162 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  241 (358)
Q Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~  241 (358)
                      .+|.+.|..+-|.... +.++++..|++|++||.+++.... ......+|+++.+++++  .+++....+.|.+||..+.
T Consensus       140 ~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~-sL~~~s~VtSlEvs~dG--~ilTia~gssV~Fwdaksf  215 (334)
T KOG0278|consen  140 SGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQ-SLEFNSPVTSLEVSQDG--RILTIAYGSSVKFWDAKSF  215 (334)
T ss_pred             cCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEE-EEecCCCCcceeeccCC--CEEEEecCceeEEeccccc
Confidence            9999999999999887 788899999999999999998776 56678899999999965  4666667889999999886


Q ss_pred             CCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEE
Q 018293          242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVL  321 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  321 (358)
                               ..+..+.. ...|.+...+|+. ..+++|++|..++.||..+++.+... ..+|.++|.|+.|+|+|. +.
T Consensus       216 ---------~~lKs~k~-P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE-~y  282 (334)
T KOG0278|consen  216 ---------GLLKSYKM-PCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGE-LY  282 (334)
T ss_pred             ---------cceeeccC-ccccccccccCCC-ceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCc-ee
Confidence                     44544443 4568899999987 89999999999999999999843321 478999999999999999 79


Q ss_pred             EEEccCCeEEEEEccCCCcc
Q 018293          322 AIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       322 ~~~~~dg~i~vw~~~~~~~~  341 (358)
                      ++|+.||+|++|.+..++..
T Consensus       283 AsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  283 ASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             eccCCCceEEEEEecCCCch
Confidence            99999999999999876654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.9e-32  Score=197.53  Aligned_cols=220  Identities=16%  Similarity=0.183  Sum_probs=195.7

Q ss_pred             cccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEE
Q 018293          114 IKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK  193 (358)
Q Consensus       114 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  193 (358)
                      ....+..|+++|.++.|+-+ +++.++++.|.+|++|+...+.+++++.+|...|..++.+.|+ ..|++++.|..+.+|
T Consensus         9 r~~~l~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vw   86 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVW   86 (307)
T ss_pred             hceeecccccceEEEEEccC-CCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-cccccCCCCceEEEE
Confidence            34456789999999999999 6799999999999999999999999999999999999999998 789999999999999


Q ss_pred             EcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC
Q 018293          194 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  273 (358)
Q Consensus       194 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  273 (358)
                      |+.+++......+|.+.|+.++|+. ....+++|+-|..+++||.++...       ++++.+......|.++..+.   
T Consensus        87 DV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~-------ePiQildea~D~V~Si~v~~---  155 (307)
T KOG0316|consen   87 DVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSF-------EPIQILDEAKDGVSSIDVAE---  155 (307)
T ss_pred             EcccCeeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCC-------CccchhhhhcCceeEEEecc---
Confidence            9999999998999999999999998 456999999999999999998754       77888888888999999984   


Q ss_pred             cEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcCC
Q 018293          274 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP  351 (358)
Q Consensus       274 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  351 (358)
                      ..+++|+.||+++.||++.++.  ..  .....+|++++|+++++. ...++.|+++++.|-.+|+.+....++....
T Consensus       156 heIvaGS~DGtvRtydiR~G~l--~s--Dy~g~pit~vs~s~d~nc-~La~~l~stlrLlDk~tGklL~sYkGhkn~e  228 (307)
T KOG0316|consen  156 HEIVAGSVDGTVRTYDIRKGTL--SS--DYFGHPITSVSFSKDGNC-SLASSLDSTLRLLDKETGKLLKSYKGHKNME  228 (307)
T ss_pred             cEEEeeccCCcEEEEEeeccee--eh--hhcCCcceeEEecCCCCE-EEEeeccceeeecccchhHHHHHhcccccce
Confidence            7899999999999999999972  22  233568999999999996 5568999999999999999998877776543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.9e-32  Score=229.12  Aligned_cols=296  Identities=20%  Similarity=0.225  Sum_probs=230.7

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCC-CceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ...++-+.|++++.    +.+++|-.+.....+ .+++...+.........++|-.      -+.++|||++..|.|.+|
T Consensus        46 s~nr~~~qiv~AGr----s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~------~~~NlIAT~s~nG~i~vW  115 (839)
T KOG0269|consen   46 SVNRDINQIVVAGR----SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQ------LYSNLIATCSTNGVISVW  115 (839)
T ss_pred             eecCCcceeEEecc----cceeeEeeCcccCCcceeeecccccceeeehhhccccc------chhhhheeecCCCcEEEE
Confidence            34566777777744    446777766654221 2223222223333344677742      367899999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      |+...                        .+.+....+..|+..++++.|++...++|++|+.||+|++||++..+...+
T Consensus       116 dlnk~------------------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t  171 (839)
T KOG0269|consen  116 DLNKS------------------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST  171 (839)
T ss_pred             ecCcc------------------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc
Confidence            99731                        134455577889999999999998889999999999999999999988889


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-cceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR  239 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~  239 (358)
                      +.+....|+.++|+|..+..|+++...|.+++||++..... ..+..|.++|.|+.|+| +..+||+|+.|+.|+|||+.
T Consensus       172 ~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t  250 (839)
T KOG0269|consen  172 FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMT  250 (839)
T ss_pred             ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEecc
Confidence            98889999999999988899999999999999999987643 44668999999999999 66799999999999999998


Q ss_pred             cCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC--CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293          240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS  317 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  317 (358)
                      ..+.       .+...+. ...++.++.|-|.....|++++.  |-.|+|||++-.- ++...+..|...++.++|....
T Consensus       251 ~~~~-------~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-IP~~t~~eH~~~vt~i~W~~~d  321 (839)
T KOG0269|consen  251 DSRA-------KPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-IPYATFLEHTDSVTGIAWDSGD  321 (839)
T ss_pred             CCCc-------cceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc-ccceeeeccCccccceeccCCC
Confidence            7632       3333333 35789999999998788888765  7779999998653 4667788899999999998755


Q ss_pred             CeEEEEEccCCeEEEEEccCCCcc
Q 018293          318 PFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       318 ~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      ...+.+++.||+|..-.+++....
T Consensus       322 ~~~l~s~sKD~tv~qh~~knat~p  345 (839)
T KOG0269|consen  322 RINLWSCSKDGTVLQHLFKNATTP  345 (839)
T ss_pred             ceeeEeecCccHHHHhhhhcccCh
Confidence            557889999998876665554433

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=4.1e-31  Score=228.54  Aligned_cols=275  Identities=26%  Similarity=0.389  Sum_probs=225.3

Q ss_pred             CcEEEEEEecCCCceEEEEEEeccCCCCCce-EeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccc
Q 018293            7 DAVIVCARNEDDVSHLEVYILEESDGGDPNL-YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI   85 (358)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~   85 (358)
                      ++.++++..+.     .+.+|+...+..... ...|...+.    +++.       ..-+.+|++|+.|.+++|||..++
T Consensus       218 ~~~~~~~s~~~-----tl~~~~~~~~~~i~~~l~GH~g~V~----~l~~-------~~~~~~lvsgS~D~t~rvWd~~sg  281 (537)
T KOG0274|consen  218 DGFFKSGSDDS-----TLHLWDLNNGYLILTRLVGHFGGVW----GLAF-------PSGGDKLVSGSTDKTERVWDCSTG  281 (537)
T ss_pred             cCeEEecCCCc-----eeEEeecccceEEEeeccCCCCCce----eEEE-------ecCCCEEEEEecCCcEEeEecCCC
Confidence            55666665554     457777776544333 444543332    3332       345889999999999999999876


Q ss_pred             cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccc
Q 018293           86 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT  165 (358)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  165 (358)
                      ++..                           .+.+|...|.++...+.   ++++|+.|.+|++|+++++.++..+.+|.
T Consensus       282 ~C~~---------------------------~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~~h~  331 (537)
T KOG0274|consen  282 ECTH---------------------------SLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLRGHT  331 (537)
T ss_pred             cEEE---------------------------EecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEecccc
Confidence            6544                           56689999999998755   78899999999999999999999999999


Q ss_pred             cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCC
Q 018293          166 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP  245 (358)
Q Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~  245 (358)
                      .+|.++..+  + .++++|+.|++|++||+.+.+......+|...|.++.+.+.  ..+++|+.|+.|++||+++..   
T Consensus       332 ~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~---  403 (537)
T KOG0274|consen  332 GPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR---  403 (537)
T ss_pred             ccEEEEEec--C-CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchh---
Confidence            999999998  4 78999999999999999999999989999999999988763  689999999999999999862   


Q ss_pred             CCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCC-CCceeEEEEEcCCCCeEEEEE
Q 018293          246 DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP-KAGAVFSVAFSEDSPFVLAIG  324 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~  324 (358)
                           +++..+.+|..-+.++.+..   ++|++++.|+.|++||..+++  +.....+ |.+.|..+++.  .. .++++
T Consensus       404 -----~c~~tl~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~--~~~~~~~~~~~~v~~l~~~--~~-~il~s  470 (537)
T KOG0274|consen  404 -----KCIHTLQGHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGE--CLRTLEGRHVGGVSALALG--KE-EILCS  470 (537)
T ss_pred             -----hhhhhhcCCccccccccccc---ceeEeccccccEEEeecccCc--eeeeeccCCcccEEEeecC--cc-eEEEE
Confidence                 67888899998887776663   799999999999999999998  5556666 67888888887  23 57789


Q ss_pred             ccCCeEEEEEccCCCccccccccC
Q 018293          325 GSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       325 ~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                      +.||.+++||+.+++...+.+...
T Consensus       471 ~~~~~~~l~dl~~~~~~~~l~~~~  494 (537)
T KOG0274|consen  471 SDDGSVKLWDLRSGTLIRTLLSTD  494 (537)
T ss_pred             ecCCeeEEEecccCchhhhhhhcc
Confidence            999999999999999988775443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=3.7e-31  Score=232.49  Aligned_cols=306  Identities=19%  Similarity=0.282  Sum_probs=223.7

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEecc------CCCCCceEeece--eecCCcccceeeecCCccccCCCceEEecC
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEES------DGGDPNLYVHHH--IIIPAFPLCMAWLDCPLKDREKGNFMAVGS   72 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~   72 (358)
                      ++++|++..+++|+.-.| +.+.  +|+..      .....++..+-.  ........|+.|       +|||++||+|+
T Consensus        19 Idv~pdg~~~aTgGq~~d-~~~~--iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~-------S~dG~~lAsGS   88 (942)
T KOG0973|consen   19 IDVHPDGVKFATGGQVLD-GGIV--IWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF-------SPDGSYLASGS   88 (942)
T ss_pred             EEecCCceeEecCCcccc-ccce--eeccccccchhhhhhcccchhheeeccccCceeEEEE-------CCCCCeEeecc
Confidence            478999999999973222 2222  44322      111111111111  112333446666       99999999999


Q ss_pred             CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEEC
Q 018293           73 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  152 (358)
Q Consensus        73 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  152 (358)
                      .|+.|.||+... ....  ...+...      .......++.+..+.+|...|..++|+|+ +.+|++++.|++|.+||.
T Consensus        89 DD~~v~iW~~~~-~~~~--~~fgs~g------~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lvS~s~DnsViiwn~  158 (942)
T KOG0973|consen   89 DDRLVMIWERAE-IGSG--TVFGSTG------GAKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLVSVSLDNSVIIWNA  158 (942)
T ss_pred             CcceEEEeeecc-cCCc--ccccccc------cccccceeeEEEEEecCCCccceeccCCC-ccEEEEecccceEEEEcc
Confidence            999999999874 1111  1111000      01234668888899999999999999998 779999999999999999


Q ss_pred             CCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee------eecCCeeeEEEcCCCCCeEEE
Q 018293          153 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------AVAADVESLAWDPHAEHSFVV  226 (358)
Q Consensus       153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~  226 (358)
                      .+.+.+..+.+|...|..+.|.|-| ++|++-+.|++|++|++.+-.......      ........+.|+|+|. +|++
T Consensus       159 ~tF~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~-~las  236 (942)
T KOG0973|consen  159 KTFELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH-HLAS  236 (942)
T ss_pred             ccceeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC-eecc
Confidence            9999999999999999999999999 999999999999999976533222111      2234578899999765 6666


Q ss_pred             Ee-c---CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC--------C----Cc----EEEEEeCCCcEE
Q 018293          227 SL-E---DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL--------V----PN----LLATGSTDKMVK  286 (358)
Q Consensus       227 ~~-~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--------~----~~----~l~~~~~dg~i~  286 (358)
                      .. .   -..+.|.+-.+.         +.-..+-+|..++.+++|+|.        |    ++    .+|+|+.|++|.
T Consensus       237 ~nA~n~~~~~~~IieR~tW---------k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlS  307 (942)
T KOG0973|consen  237 PNAVNGGKSTIAIIERGTW---------KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLS  307 (942)
T ss_pred             hhhccCCcceeEEEecCCc---------eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEE
Confidence            42 2   336778877665         667789999999999999981        1    11    688999999999


Q ss_pred             EEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          287 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       287 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      ||.....+|..+ ...-....|..++|+|||.. |.+++.||+|.+..++..+
T Consensus       308 VW~T~~~RPl~v-i~~lf~~SI~DmsWspdG~~-LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  308 VWNTALPRPLFV-IHNLFNKSIVDMSWSPDGFS-LFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             EEecCCCCchhh-hhhhhcCceeeeeEcCCCCe-EEEEecCCeEEEEEcchHH
Confidence            999977776433 23334678999999999995 6678999999999997643

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.6e-30  Score=195.68  Aligned_cols=249  Identities=18%  Similarity=0.276  Sum_probs=195.9

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      ++.|+++|.+|++++.|.+++|||..++....                           ....++-.|..++|... .+.
T Consensus        19 sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---------------------------ti~skkyG~~~~~Fth~-~~~   70 (311)
T KOG1446|consen   19 SLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---------------------------TINSKKYGVDLACFTHH-SNT   70 (311)
T ss_pred             EEEecCCCCEEEEecCCCeEEEEEcCCCceee---------------------------EeecccccccEEEEecC-Cce
Confidence            34559999999999999999999998655544                           23345667888888766 445


Q ss_pred             EEEEEc--CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEE
Q 018293          138 LASASA--DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA  215 (358)
Q Consensus       138 l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  215 (358)
                      ++.++.  |.+|+..++.+.+.++.+.+|...|.+++.+|-+ ..+++++.|++|++||++..++.....  ...-..++
T Consensus        71 ~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~A  147 (311)
T KOG1446|consen   71 VIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAA  147 (311)
T ss_pred             EEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEe--cCCCccee
Confidence            556665  8899999999999999999999999999999998 889999999999999999777655332  23345678


Q ss_pred             EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe---ecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293          216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  292 (358)
Q Consensus       216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~  292 (358)
                      |+|. +-++|++...+.|++||+|.-..       .+...+.   ......+.+.|+|+| ++|+.++..+.+++.|.-+
T Consensus       148 fDp~-GLifA~~~~~~~IkLyD~Rs~dk-------gPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~  218 (311)
T KOG1446|consen  148 FDPE-GLIFALANGSELIKLYDLRSFDK-------GPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFD  218 (311)
T ss_pred             ECCC-CcEEEEecCCCeEEEEEecccCC-------CCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccC
Confidence            9995 55788887777999999998643       2333332   336678999999999 8888888899999999999


Q ss_pred             CCceeeEecCCCCc-eeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293          293 NQPSCIASRNPKAG-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       293 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                      +............+ .-...+|+||+++ +.+|+.||+|.+|+++++..+...-+.
T Consensus       219 G~~~~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  219 GTVKSTFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWNLETGKKVAVLRGP  273 (311)
T ss_pred             CcEeeeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEEcCCCcEeeEecCC
Confidence            88444333333222 2257889999996 778999999999999999988776664

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.5e-31  Score=209.22  Aligned_cols=250  Identities=18%  Similarity=0.273  Sum_probs=203.6

Q ss_pred             ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      +.||++|+|||+++.|.+..+|++...                        ...++.+++.+|..+|..+.|||| .++|
T Consensus       230 l~FS~nGkyLAsaSkD~Taiiw~v~~d------------------------~~~kl~~tlvgh~~~V~yi~wSPD-dryL  284 (519)
T KOG0293|consen  230 LQFSHNGKYLASASKDSTAIIWIVVYD------------------------VHFKLKKTLVGHSQPVSYIMWSPD-DRYL  284 (519)
T ss_pred             EEEcCCCeeEeeccCCceEEEEEEecC------------------------cceeeeeeeecccCceEEEEECCC-CCeE
Confidence            357999999999999999999998521                        235667788999999999999999 6688


Q ss_pred             EEEEcCCeEEEEECCCCceeeeec-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293          139 ASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  217 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  217 (358)
                      ++|+.|..+.+||+.+|.+...+. ++...+.+++|.||+ ..+++|+.|+.+..||+...............|.+++..
T Consensus       285 laCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait  363 (519)
T KOG0293|consen  285 LACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAIT  363 (519)
T ss_pred             EecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEc
Confidence            889999999999999999887775 346789999999999 889999999999999998765444333344679999999


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCcee
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  297 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  297 (358)
                      +||. .+++.+.|..|++|+....         .. ..+.....+|+++.++.++ +++++.-.+..+.+||+...+  .
T Consensus       364 ~Dgk-~vl~v~~d~~i~l~~~e~~---------~d-r~lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~--l  429 (519)
T KOG0293|consen  364 YDGK-YVLLVTVDKKIRLYNREAR---------VD-RGLISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENK--L  429 (519)
T ss_pred             CCCc-EEEEEecccceeeechhhh---------hh-hccccccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhh--H
Confidence            9765 6777779999999999864         22 2233446789999999998 899998899999999999665  5


Q ss_pred             eEecCCCCc--eeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293          298 IASRNPKAG--AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       298 ~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                      +..+.+|..  .+..-+|-.-...++++|++|+.|+||+..+++.+..+-+|.
T Consensus       430 v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs  482 (519)
T KOG0293|consen  430 VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS  482 (519)
T ss_pred             HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc
Confidence            666677754  355556765543469999999999999999999998877765

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-30  Score=192.64  Aligned_cols=243  Identities=25%  Similarity=0.379  Sum_probs=195.7

Q ss_pred             CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec-CCCCCcEEEEE
Q 018293           63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNILASA  141 (358)
Q Consensus        63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~s~  141 (358)
                      --|++|||++.|++|+|+.+.....                        ..+...|.||.++|..++| +|..+.+||++
T Consensus        21 yygkrlATcsSD~tVkIf~v~~n~~------------------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLASc   76 (299)
T KOG1332|consen   21 YYGKRLATCSSDGTVKIFEVRNNGQ------------------------SKLLAELTGHSGPVWKVAWAHPKFGTILASC   76 (299)
T ss_pred             hhcceeeeecCCccEEEEEEcCCCC------------------------ceeeeEecCCCCCeeEEeecccccCcEeeEe
Confidence            4699999999999999999975332                        2445577899999999999 46668899999


Q ss_pred             EcCCeEEEEECCCCc--eeeeecccccceeeEEEcCCC-CcEEEEEeCCCcEEEEEcccCC---CccceeeecCCeeeEE
Q 018293          142 SADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARIST---HSGFKWAVAADVESLA  215 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~  215 (358)
                      +.||.|.||.-++++  .......|...|++++|.|.+ +-.|++++.||.|.+.+.+...   .......|.-.+++++
T Consensus        77 sYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs  156 (299)
T KOG1332|consen   77 SYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS  156 (299)
T ss_pred             ecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence            999999999988773  345567899999999999965 2578889999999999988762   2334567888999999


Q ss_pred             EcCC---C----------CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC---CcEEEEE
Q 018293          216 WDPH---A----------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV---PNLLATG  279 (358)
Q Consensus       216 ~~~~---~----------~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~---~~~l~~~  279 (358)
                      |.|.   +          .+.|++|+.|..|+||+..+..       ......+.+|...|+.++|.|.-   ..+|+++
T Consensus       157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~  229 (299)
T KOG1332|consen  157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC  229 (299)
T ss_pred             ecCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------hhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence            9984   1          1469999999999999998863       24455689999999999999954   3589999


Q ss_pred             eCCCcEEEEecCCC-CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          280 STDKMVKLWDLSNN-QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       280 ~~dg~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      +.||++.||-.+.. ++.....+......+.++.||..|. +|+.++.|+.|.+|.-..
T Consensus       230 SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  230 SQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             cCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc-EEEEecCCcEEEEEEeCC
Confidence            99999999987643 2222233344567899999999999 699999999999997543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.98  E-value=4.1e-30  Score=204.41  Aligned_cols=278  Identities=18%  Similarity=0.243  Sum_probs=229.2

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      |.+.|.-+.+++|+.+.     .+.+|+...+....++..|...+       .    ++.|+++...+++++.|-.|+||
T Consensus       225 ld~~~s~~~ilTGG~d~-----~av~~d~~s~q~l~~~~Gh~kki-------~----~v~~~~~~~~v~~aSad~~i~vw  288 (506)
T KOG0289|consen  225 LDIIPSSSKILTGGEDK-----TAVLFDKPSNQILATLKGHTKKI-------T----SVKFHKDLDTVITASADEIIRVW  288 (506)
T ss_pred             EeecCCCCcceecCCCC-----ceEEEecchhhhhhhccCcceEE-------E----EEEeccchhheeecCCcceEEee
Confidence            34667778888997776     67778877766666776665444       2    34559999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      ........                           .....|..+|+.+..+|. +.||++++.||+..+.|++++.++..
T Consensus       289 s~~~~s~~---------------------------~~~~~h~~~V~~ls~h~t-geYllsAs~d~~w~Fsd~~~g~~lt~  340 (506)
T KOG0289|consen  289 SVPLSSEP---------------------------TSSRPHEEPVTGLSLHPT-GEYLLSASNDGTWAFSDISSGSQLTV  340 (506)
T ss_pred             ccccccCc---------------------------cccccccccceeeeeccC-CcEEEEecCCceEEEEEccCCcEEEE
Confidence            98643322                           234469999999999999 67999999999999999999988776


Q ss_pred             ecc--cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293          161 LEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  238 (358)
Q Consensus       161 ~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~  238 (358)
                      ...  ..-.+++.+|+||| .+|.+|..||.+++||+........+.+|.++|..++|+. ++++++++++|+.|++||+
T Consensus       341 vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDL  418 (506)
T KOG0289|consen  341 VSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDL  418 (506)
T ss_pred             EeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEe
Confidence            653  23458999999999 9999999999999999999888877888999999999998 5779999999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293          239 RTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS  317 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  317 (358)
                      |+.+         ....+... ..++.++.|.+.| .+|+.++.|=.|++++-.+.+...+..+..|.+..+.+.|....
T Consensus       419 RKl~---------n~kt~~l~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a  488 (506)
T KOG0289|consen  419 RKLK---------NFKTIQLDEKKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA  488 (506)
T ss_pred             hhhc---------ccceeeccccccceeEEEcCCC-CeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccc
Confidence            9873         33333322 2379999999998 89999888888888887777777888888899899999999998


Q ss_pred             CeEEEEEccCCeEEEEEc
Q 018293          318 PFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       318 ~~~l~~~~~dg~i~vw~~  335 (358)
                      ++ +++++.|..++++.+
T Consensus       489 q~-l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  489 QY-LASTSMDAILRLYAL  505 (506)
T ss_pred             eE-EeeccchhheEEeec
Confidence            85 999999999998864

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=3.1e-30  Score=196.00  Aligned_cols=246  Identities=22%  Similarity=0.319  Sum_probs=189.6

Q ss_pred             CccccC-CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCc
Q 018293           58 PLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  136 (358)
Q Consensus        58 ~~~~s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  136 (358)
                      +++||| ...++++|+.||+||+|+++......+                         .....|.++|.+++|+.+ +.
T Consensus        32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-------------------------ka~~~~~~PvL~v~Wsdd-gs   85 (347)
T KOG0647|consen   32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-------------------------KAQQSHDGPVLDVCWSDD-GS   85 (347)
T ss_pred             eeEeccccCceEEecccCCceEEEEEecCCcccc-------------------------hhhhccCCCeEEEEEccC-Cc
Confidence            345688 456777999999999999975322221                         234469999999999999 57


Q ss_pred             EEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCC-cEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEE
Q 018293          137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP-QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA  215 (358)
Q Consensus       137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  215 (358)
                      .+++|+.|+.+++||+.+++ +..+..|..+|.++.|-+... ..|++|+.|.+|++||++....+. .......+.++.
T Consensus        86 kVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~-t~~LPeRvYa~D  163 (347)
T KOG0647|consen   86 KVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA-TLQLPERVYAAD  163 (347)
T ss_pred             eEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeee-eeeccceeeehh
Confidence            99999999999999999995 566777999999999987652 488999999999999999877665 556677788776


Q ss_pred             EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      .-.   .+++++..+..|.+|+++++....       ......-.-.++|++..++. ...+.|+-+|.+.|..+..+.+
T Consensus       164 v~~---pm~vVata~r~i~vynL~n~~te~-------k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~  232 (347)
T KOG0647|consen  164 VLY---PMAVVATAERHIAVYNLENPPTEF-------KRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNP  232 (347)
T ss_pred             ccC---ceeEEEecCCcEEEEEcCCCcchh-------hhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCc
Confidence            643   388999999999999998763211       11111123457899999887 5558999999999999988644


Q ss_pred             eeeEecCCCC---------ceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          296 SCIASRNPKA---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       296 ~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      ..-+.+.-|.         ..|++++|+|... .|+++|.||++.+||-.....+..
T Consensus       233 ~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~kLk~  288 (347)
T KOG0647|consen  233 KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDARTKLKT  288 (347)
T ss_pred             cCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhhhhhc
Confidence            3344444443         3588999999877 599999999999999876666554

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=3.6e-31  Score=224.44  Aligned_cols=258  Identities=20%  Similarity=0.335  Sum_probs=211.1

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      +++-..++.++. ..+.||.++............                    ...+.-.-.+..+.|..-..++||++
T Consensus        48 nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~--------------------k~kqn~~~S~~DVkW~~~~~NlIAT~  106 (839)
T KOG0269|consen   48 NRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRF--------------------KTKQNKFYSAADVKWGQLYSNLIATC  106 (839)
T ss_pred             cCCcceeEEecc-cceeeEeeCcccCCcceeeec--------------------ccccceeeehhhcccccchhhhheee
Confidence            577777777764 478888887544433222110                    00011223466788886667899999


Q ss_pred             EcCCeEEEEECCC---CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293          142 SADKQVKIWDVAA---GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  218 (358)
Q Consensus       142 ~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  218 (358)
                      +..|.|.+||+..   .+.+..|..|...++++.|++..+++|++|+.||+|++||++..+...........|..+.|+|
T Consensus       107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp  186 (839)
T KOG0269|consen  107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP  186 (839)
T ss_pred             cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence            9999999999987   5667788999999999999999999999999999999999999988887788888999999999


Q ss_pred             CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceee
Q 018293          219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  298 (358)
Q Consensus       219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  298 (358)
                      ..++.|+++.+.|.+++||+|..        .++...+.+|.++|.++.|+|++ .+||||+.|+.|+|||+.+.+....
T Consensus       187 ~~~~~F~s~~dsG~lqlWDlRqp--------~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~  257 (839)
T KOG0269|consen  187 GYGNKFASIHDSGYLQLWDLRQP--------DRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPK  257 (839)
T ss_pred             CCCceEEEecCCceEEEeeccCc--------hhHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccce
Confidence            88999999999999999999987        47888899999999999999977 9999999999999999998765444


Q ss_pred             EecCCCCceeEEEEEcCCCCeEEEEEc--cCCeEEEEEccCCCccccccccCcC
Q 018293          299 ASRNPKAGAVFSVAFSEDSPFVLAIGG--SKGKLEIWDTLSDAGISNRFSKYSK  350 (358)
Q Consensus       299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~  350 (358)
                      ..+. ...+|.+++|-|..++.||+++  .|-.|+|||++........+..+..
T Consensus       258 ~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~  310 (839)
T KOG0269|consen  258 HTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD  310 (839)
T ss_pred             eEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence            4443 3578999999999999899887  4678999999887766666655543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=8.8e-30  Score=193.56  Aligned_cols=270  Identities=18%  Similarity=0.297  Sum_probs=207.4

Q ss_pred             CcccC-CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293            1 MTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI   79 (358)
Q Consensus         1 l~~~p-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v   79 (358)
                      |+||| .++++++++.++     .|.+|+......  +...-...++.+++|+.|       +.||..+++|+.|+.+++
T Consensus        33 l~FSP~~~~~~~A~SWD~-----tVR~wevq~~g~--~~~ka~~~~~~PvL~v~W-------sddgskVf~g~~Dk~~k~   98 (347)
T KOG0647|consen   33 LAFSPQADNLLAAGSWDG-----TVRIWEVQNSGQ--LVPKAQQSHDGPVLDVCW-------SDDGSKVFSGGCDKQAKL   98 (347)
T ss_pred             eEeccccCceEEecccCC-----ceEEEEEecCCc--ccchhhhccCCCeEEEEE-------ccCCceEEeeccCCceEE
Confidence            68999 677777887776     666666655211  111122345677889888       789999999999999999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC-CcEEEEEEcCCeEEEEECCCCcee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVAAGKCN  158 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~  158 (358)
                      ||+.+++...                            ...|.++|.++.|-+.. -..|++|+.|++|+.||++...++
T Consensus        99 wDL~S~Q~~~----------------------------v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv  150 (347)
T KOG0647|consen   99 WDLASGQVSQ----------------------------VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV  150 (347)
T ss_pred             EEccCCCeee----------------------------eeecccceeEEEEecCCCcceeEecccccceeecccCCCCee
Confidence            9998764332                            33599999999997652 238999999999999999999988


Q ss_pred             eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc--ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEE
Q 018293          159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF  236 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~  236 (358)
                      .++. ..+.++++..-.   .+++++..+..|.+|+++.+....  ......-.+.|++..++.. ..+.|+-+|.+.+.
T Consensus       151 ~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq  225 (347)
T KOG0647|consen  151 ATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQ  225 (347)
T ss_pred             eeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeeecceEEEE
Confidence            8887 567788877654   578889999999999997664332  2234556789999988655 55999999999999


Q ss_pred             EcccCCCCCCCCCCCccEEEeecC---------CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCce
Q 018293          237 DIRTAKSDPDSTSQQSSFTLHAHD---------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA  307 (358)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  307 (358)
                      .+..+..       ..-+.++.|.         ..|++|+|+|.. ..|+|.+.||++.+||-....  .+...+.|..+
T Consensus       226 ~id~~~~-------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~--kLk~s~~~~qp  295 (347)
T KOG0647|consen  226 YIDDPNP-------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDART--KLKTSETHPQP  295 (347)
T ss_pred             ecCCCCc-------cCceeEEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhh--hhhccCcCCCc
Confidence            9987532       3445566665         258899999976 799999999999999987766  46677889999


Q ss_pred             eEEEEEcCCCCeEEEEEccC
Q 018293          308 VFSVAFSEDSPFVLAIGGSK  327 (358)
Q Consensus       308 v~~~~~~~~~~~~l~~~~~d  327 (358)
                      |++.+|+.+|.++..+.+.|
T Consensus       296 Itcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  296 ITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             cceeEecCCCCEEEEEeecc
Confidence            99999999999644444443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.98  E-value=6.8e-31  Score=200.52  Aligned_cols=255  Identities=19%  Similarity=0.297  Sum_probs=199.0

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCc-CceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCc
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEV-QPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  136 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  136 (358)
                      +.+||+||.++|||+.|..|+|.|++..-.. .+.....          .........+..+..|..+|+++.|+|. ..
T Consensus       117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~----------~~~qa~hPvIRTlYDH~devn~l~FHPr-e~  185 (430)
T KOG0640|consen  117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMIS----------GDTQARHPVIRTLYDHVDEVNDLDFHPR-ET  185 (430)
T ss_pred             eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhcc----------CCcccCCceEeehhhccCcccceeecch-hh
Confidence            3457999999999999999999998732100 0100000          0111234667788899999999999999 78


Q ss_pred             EEEEEEcCCeEEEEECCCCceeeeec--ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc---ceeeecCCe
Q 018293          137 ILASASADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAADV  211 (358)
Q Consensus       137 ~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~i  211 (358)
                      .|++|+.|++|+++|+......+.++  ....+|.++.|+|.| .+++.|.....+++||+++.++..   ....|.+.|
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            99999999999999997653333222  245789999999999 899999999999999999877543   234678899


Q ss_pred             eeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eec-CCceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 018293          212 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWD  289 (358)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d  289 (358)
                      +++.+++. +++.++++.||.|++||--+.         +++..+ ..| ...|.+..|..++ +++++.+.|..+++|.
T Consensus       265 ~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~---------rCv~t~~~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWE  333 (430)
T KOG0640|consen  265 TQVRYSST-GSLYVTASKDGAIKLWDGVSN---------RCVRTIGNAHGGSEVCSAVFTKNG-KYILSSGKDSTVKLWE  333 (430)
T ss_pred             eEEEecCC-ccEEEEeccCCcEEeeccccH---------HHHHHHHhhcCCceeeeEEEccCC-eEEeecCCcceeeeee
Confidence            99999995 569999999999999998876         566555 345 4578999999998 9999999999999999


Q ss_pred             cCCCCceeeE-----------------------------------------------ecCCCCceeEEEEEcCCCCeEEE
Q 018293          290 LSNNQPSCIA-----------------------------------------------SRNPKAGAVFSVAFSEDSPFVLA  322 (358)
Q Consensus       290 ~~~~~~~~~~-----------------------------------------------~~~~~~~~v~~~~~~~~~~~~l~  322 (358)
                      +.+++++...                                               ...+|.+.+..+.-+|.+. .++
T Consensus       334 i~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p-~Fm  412 (430)
T KOG0640|consen  334 ISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP-AFM  412 (430)
T ss_pred             ecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC-cee
Confidence            9886532110                                               1135777888899999999 599


Q ss_pred             EEccCCeEEEEEcc
Q 018293          323 IGGSKGKLEIWDTL  336 (358)
Q Consensus       323 ~~~~dg~i~vw~~~  336 (358)
                      +|+.|..+++|--+
T Consensus       413 TcsdD~raRFWyrr  426 (430)
T KOG0640|consen  413 TCSDDFRARFWYRR  426 (430)
T ss_pred             eecccceeeeeeec
Confidence            99999999999643

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.5e-29  Score=190.83  Aligned_cols=229  Identities=19%  Similarity=0.292  Sum_probs=184.7

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC-CcEEEEEE
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASAS  142 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~  142 (358)
                      ++.++|+|+.|-+|+|||+....+..                           .+-.|.+.|+++.|.+.. .+.|++|+
T Consensus        52 s~~~~aSGssDetI~IYDm~k~~qlg---------------------------~ll~HagsitaL~F~~~~S~shLlS~s  104 (362)
T KOG0294|consen   52 SGPYVASGSSDETIHIYDMRKRKQLG---------------------------ILLSHAGSITALKFYPPLSKSHLLSGS  104 (362)
T ss_pred             cceeEeccCCCCcEEEEeccchhhhc---------------------------ceeccccceEEEEecCCcchhheeeec
Confidence            79999999999999999997544333                           444699999999999872 12789999


Q ss_pred             cCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCC
Q 018293          143 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  222 (358)
Q Consensus       143 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  222 (358)
                      .||.|.+|+....+++..+++|...|+.++.+|.+ .+.++.+.|+.++.||+-.++... ........+.+.|+|.++ 
T Consensus       105 dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~-v~~L~~~at~v~w~~~Gd-  181 (362)
T KOG0294|consen  105 DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAF-VLNLKNKATLVSWSPQGD-  181 (362)
T ss_pred             CCCcEEEEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccce-eeccCCcceeeEEcCCCC-
Confidence            99999999999999999999999999999999999 899999999999999998877544 344455556699999766 


Q ss_pred             eEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC
Q 018293          223 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  302 (358)
Q Consensus       223 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  302 (358)
                      +|+.+..+ .|-+|.+.+.         .....+. ....+.++.|..  +..|++|..|+.|.+||..+..  +...+.
T Consensus       182 ~F~v~~~~-~i~i~q~d~A---------~v~~~i~-~~~r~l~~~~l~--~~~L~vG~d~~~i~~~D~ds~~--~~~~~~  246 (362)
T KOG0294|consen  182 HFVVSGRN-KIDIYQLDNA---------SVFREIE-NPKRILCATFLD--GSELLVGGDNEWISLKDTDSDT--PLTEFL  246 (362)
T ss_pred             EEEEEecc-EEEEEecccH---------hHhhhhh-ccccceeeeecC--CceEEEecCCceEEEeccCCCc--cceeee
Confidence            56665544 5889998875         2222222 224466666664  3799999999999999998865  577788


Q ss_pred             CCCceeEEEEE--cCCCCeEEEEEccCCeEEEEEccCC
Q 018293          303 PKAGAVFSVAF--SEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       303 ~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      +|...|-.+.+  .|++. +|++++.||.|+|||+...
T Consensus       247 AH~~RVK~i~~~~~~~~~-~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  247 AHENRVKDIASYTNPEHE-YLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             cchhheeeeEEEecCCce-EEEEeccCceEEEEEcccc
Confidence            99999999985  34565 6999999999999999876

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=3.5e-30  Score=222.80  Aligned_cols=234  Identities=26%  Similarity=0.433  Sum_probs=206.6

Q ss_pred             CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293           65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  144 (358)
Q Consensus        65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  144 (358)
                      +.++++++.|++|++||..++..+.                          ..+.+|.+.|.++++.. ++.++++|+.|
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~--------------------------~~l~GH~g~V~~l~~~~-~~~~lvsgS~D  270 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLIL--------------------------TRLVGHFGGVWGLAFPS-GGDKLVSGSTD  270 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEE--------------------------eeccCCCCCceeEEEec-CCCEEEEEecC
Confidence            6789999999999999987543322                          24779999999999987 46799999999


Q ss_pred             CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeE
Q 018293          145 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF  224 (358)
Q Consensus       145 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  224 (358)
                      .++++||..+|++...+.+|.+.+.++...+   ..+++|+.|.+|++|++.++.......+|..+|.++..+   +.++
T Consensus       271 ~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~l  344 (537)
T KOG0274|consen  271 KTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLL  344 (537)
T ss_pred             CcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEE
Confidence            9999999999999999999999999998876   568889999999999999999888777799999999997   4599


Q ss_pred             EEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC-CceeeEecCC
Q 018293          225 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN-QPSCIASRNP  303 (358)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~  303 (358)
                      ++|+.|+.|++||..+.         +++..+.+|...|.++.+.+.  ..+++|+.|+.|++||+++. +  ++..+.+
T Consensus       345 vsgs~d~~v~VW~~~~~---------~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~--c~~tl~~  411 (537)
T KOG0274|consen  345 VSGSYDGTVKVWDPRTG---------KCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRK--CIHTLQG  411 (537)
T ss_pred             EEEecCceEEEEEhhhc---------eeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhh--hhhhhcC
Confidence            99999999999999987         899999999999999988864  68999999999999999998 5  7888999


Q ss_pred             CCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293          304 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       304 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                      |...+..+.+.  ++ .|++++.||.|++||..+++++....++
T Consensus       412 h~~~v~~l~~~--~~-~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~  452 (537)
T KOG0274|consen  412 HTSLVSSLLLR--DN-FLVSSSADGTIKLWDAEEGECLRTLEGR  452 (537)
T ss_pred             Ccccccccccc--cc-eeEeccccccEEEeecccCceeeeeccC
Confidence            99888666654  44 5999999999999999999998877664

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=5.3e-29  Score=216.20  Aligned_cols=232  Identities=15%  Similarity=0.221  Sum_probs=168.5

Q ss_pred             CcccceeeecCCccccCC-CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccE
Q 018293           47 AFPLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV  125 (358)
Q Consensus        47 ~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  125 (358)
                      ..+.++.|       +|+ +++||+|+.||.|+|||+.+......                   ........+.+|...|
T Consensus        75 ~~V~~laf-------sP~~~~lLASgS~DgtIrIWDi~t~~~~~~-------------------~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         75 SSILDLQF-------NPCFSEILASGSEDLTIRVWEIPHNDESVK-------------------EIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCEEEEEE-------cCCCCCEEEEEeCCCeEEEEECCCCCcccc-------------------ccccceEEeecCCCcE
Confidence            34456666       776 78999999999999999975322100                   0011223456899999


Q ss_pred             EEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee
Q 018293          126 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  205 (358)
Q Consensus       126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  205 (358)
                      .+++|+|++..+|++++.|++|++||+++++.+..+. |...|.+++|+|+| .+|++++.|+.|++||+++++......
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~tl~  206 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIASSFH  206 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            9999999966677899999999999999998777776 56789999999999 889999999999999999987766555


Q ss_pred             eecCCeee-----EEEcCCCCCeEEEEecC----CeEEEEEcccCCCCCCCCCCCccEEEe--ecCCceeEEEecCCCCc
Q 018293          206 AVAADVES-----LAWDPHAEHSFVVSLED----GTIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPN  274 (358)
Q Consensus       206 ~~~~~i~~-----~~~~~~~~~~~~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~  274 (358)
                      .|.+.+.+     ..|++++ .++++++.|    +.|++||++...        .++....  .+.+.+.. .+.++.+.
T Consensus       207 gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~--------~pl~~~~ld~~~~~L~p-~~D~~tg~  276 (568)
T PTZ00420        207 IHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTT--------SALVTMSIDNASAPLIP-HYDESTGL  276 (568)
T ss_pred             cccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCC--------CceEEEEecCCccceEE-eeeCCCCC
Confidence            66665433     2345644 467776655    379999999641        3444332  22333333 33344338


Q ss_pred             EEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293          275 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS  317 (358)
Q Consensus       275 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  317 (358)
                      ++++|+.|+.|++|++..+....+..+. +..++.+++|.|..
T Consensus       277 l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        277 IYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence            8999999999999999877543333333 56788899999975

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.4e-30  Score=216.90  Aligned_cols=241  Identities=22%  Similarity=0.347  Sum_probs=205.5

Q ss_pred             CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293           63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  142 (358)
Q Consensus        63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  142 (358)
                      |.+++|.+|+.||.|++|++.......                     .......++.|.+.|+.+....+ ++.|++++
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~---------------------s~~~~asme~HsDWVNDiiL~~~-~~tlIS~S   92 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEP---------------------STPYIASMEHHSDWVNDIILCGN-GKTLISAS   92 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCc---------------------ccchhhhhhhhHhHHhhHHhhcC-CCceEEec
Confidence            678899999999999999987432211                     11134567789999999999988 56899999


Q ss_pred             cCCeEEEEECCCC--ceeeeecccccceeeEEE-cCCCCcEEEEEeCCCcEEEEEcccCCC--cc--------ce-eeec
Q 018293          143 ADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAW-NHHSPQILLSGSFDRSVVMKDARISTH--SG--------FK-WAVA  208 (358)
Q Consensus       143 ~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~--------~~-~~~~  208 (358)
                      .|-+|++|+...+  -+..++..|.+.|.|++. .++. .++++|+.|+.|.+||++++..  ..        .. .++.
T Consensus        93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k  171 (735)
T KOG0308|consen   93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK  171 (735)
T ss_pred             CCceEEEeecccCcchhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence            9999999999877  578889999999999999 5555 8999999999999999997632  11        11 1456


Q ss_pred             CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEE
Q 018293          209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  288 (358)
Q Consensus       209 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~  288 (358)
                      ..|.+++.++.+ ..+++|+..+.+++||.++.         +.+..+.+|+..|..+..++|| ..+++++.||+|++|
T Consensus       172 ~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~---------~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlW  240 (735)
T KOG0308|consen  172 DSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTC---------KKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLW  240 (735)
T ss_pred             cceeeeecCCcc-eEEEecCcccceEEeccccc---------cceeeeeccccceEEEEEcCCC-CeEeecCCCceEEee
Confidence            789999999954 68999999999999999998         7788899999999999999999 899999999999999


Q ss_pred             ecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          289 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      |+...+  ++.++..|...|+++..+|+-.+ +.+|+.||.|..=|+++...
T Consensus       241 dLgqQr--Cl~T~~vH~e~VWaL~~~~sf~~-vYsG~rd~~i~~Tdl~n~~~  289 (735)
T KOG0308|consen  241 DLGQQR--CLATYIVHKEGVWALQSSPSFTH-VYSGGRDGNIYRTDLRNPAK  289 (735)
T ss_pred             eccccc--eeeeEEeccCceEEEeeCCCcce-EEecCCCCcEEecccCCchh
Confidence            998877  78889999999999999999885 88999999999999988543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=1.5e-29  Score=202.38  Aligned_cols=253  Identities=23%  Similarity=0.419  Sum_probs=198.8

Q ss_pred             cCCCcEEEEEEecCCCceEEEEEEeccCCC-CC----------ceEeeceeecCCcccceeeecCCccccCC-CceEEec
Q 018293            4 NPNDAVIVCARNEDDVSHLEVYILEESDGG-DP----------NLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAVG   71 (358)
Q Consensus         4 ~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g   71 (358)
                      -|+.+.|+++...+  +  .+++|+..... .+          .+..|++.     ...+.|       ++. .-.|++|
T Consensus       133 mPQnp~iVAt~t~~--~--dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e-----g~glsW-------n~~~~g~Lls~  196 (422)
T KOG0264|consen  133 MPQNPNIVATKTSS--G--DVYVFDYTKHPSKPKASGECRPDLRLKGHEKE-----GYGLSW-------NRQQEGTLLSG  196 (422)
T ss_pred             CCCCCcEEEecCCC--C--CEEEEEeccCCCcccccccCCCceEEEeeccc-----cccccc-------ccccceeEeec
Confidence            47677777765554  2  66666654321 11          23344431     224556       443 4578999


Q ss_pred             CCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEE
Q 018293           72 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  151 (358)
Q Consensus        72 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd  151 (358)
                      +.|+.|++||++......                    +...+...+.+|...|..++|++....+|++++.|+.+.|||
T Consensus       197 ~~d~~i~lwdi~~~~~~~--------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD  256 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKED--------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWD  256 (422)
T ss_pred             cCCCcEEEEeccccccCC--------------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEE
Confidence            999999999998644321                    224455577799999999999998888999999999999999


Q ss_pred             CC--CCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-cceeeecCCeeeEEEcCCCCCeEEEEe
Q 018293          152 VA--AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDPHAEHSFVVSL  228 (358)
Q Consensus       152 ~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~  228 (358)
                      ++  +.++.....+|..++.|++|+|.+..+|++|+.|++|.+||+|..... .....|...|.++.|+|+....+++++
T Consensus       257 ~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg  336 (422)
T KOG0264|consen  257 TRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG  336 (422)
T ss_pred             cCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc
Confidence            99  566777888999999999999998899999999999999999987654 445678999999999999999999999


Q ss_pred             cCCeEEEEEcccCCCCC-----CCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293          229 EDGTIKGFDIRTAKSDP-----DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  292 (358)
Q Consensus       229 ~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~  292 (358)
                      .|+.+.+||+..-....     ......+++.-.+|...|..+.|+|+.+..|++.+.|+.+.||++..
T Consensus       337 ~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  337 TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            99999999997653321     12223556777899999999999999988999999999999999864

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.4e-28  Score=187.18  Aligned_cols=276  Identities=17%  Similarity=0.257  Sum_probs=207.9

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCC--CCeEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM--EPAIE   78 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--dg~i~   78 (358)
                      |+|+++|..++++..++     .+.+|+...+........++....    .+.+       ......++.++.  |.+|+
T Consensus        20 l~fs~~G~~litss~dD-----sl~LYd~~~g~~~~ti~skkyG~~----~~~F-------th~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen   20 LDFSDDGLLLITSSEDD-----SLRLYDSLSGKQVKTINSKKYGVD----LACF-------THHSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             EEecCCCCEEEEecCCC-----eEEEEEcCCCceeeEeeccccccc----EEEE-------ecCCceEEEccCCCCCceE
Confidence            57999999999986666     899999888744444333322221    2222       344445555554  88999


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN  158 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  158 (358)
                      .-++.+.+.                           ++.+.||...|+.|+.+|- +..+++++.|++|++||++..++.
T Consensus        84 yLsl~dNky---------------------------lRYF~GH~~~V~sL~~sP~-~d~FlS~S~D~tvrLWDlR~~~cq  135 (311)
T KOG1446|consen   84 YLSLHDNKY---------------------------LRYFPGHKKRVNSLSVSPK-DDTFLSSSLDKTVRLWDLRVKKCQ  135 (311)
T ss_pred             EEEeecCce---------------------------EEEcCCCCceEEEEEecCC-CCeEEecccCCeEEeeEecCCCCc
Confidence            999976443                           4467799999999999999 579999999999999999988887


Q ss_pred             eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-cee----eecCCeeeEEEcCCCCCeEEEEecCCeE
Q 018293          159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKW----AVAADVESLAWDPHAEHSFVVSLEDGTI  233 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~----~~~~~i~~~~~~~~~~~~~~~~~~dg~i  233 (358)
                      ..+.....+  .++|.|+| -+++++.....|++||++.-.... ...    ......+.+.|+|+| ..++.++..+.+
T Consensus       136 g~l~~~~~p--i~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~  211 (311)
T KOG1446|consen  136 GLLNLSGRP--IAAFDPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFI  211 (311)
T ss_pred             eEEecCCCc--ceeECCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcE
Confidence            777543333  47899999 888888888899999999763321 111    235678999999965 578888899999


Q ss_pred             EEEEcccCCCCCCCCCCCccEEEeecCCce---eEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCC-CCceeE
Q 018293          234 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAV---CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP-KAGAVF  309 (358)
Q Consensus       234 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i---~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~v~  309 (358)
                      ++.|.-.+         .....+..+...-   .+.+|.|++ +++++|+.||+|.+|+++++..  +..+.+ +.+++.
T Consensus       212 ~~lDAf~G---------~~~~tfs~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~--v~~~~~~~~~~~~  279 (311)
T KOG1446|consen  212 YLLDAFDG---------TVKSTFSGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKK--VAVLRGPNGGPVS  279 (311)
T ss_pred             EEEEccCC---------cEeeeEeeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcE--eeEecCCCCCCcc
Confidence            99999988         5566666554332   577899999 9999999999999999999984  444444 788999


Q ss_pred             EEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          310 SVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       310 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      ++.|+|.-. +++++  +..+.+|=....+
T Consensus       280 ~~~fnP~~~-mf~sa--~s~l~fw~p~~~~  306 (311)
T KOG1446|consen  280 CVRFNPRYA-MFVSA--SSNLVFWLPDEDA  306 (311)
T ss_pred             ccccCCcee-eeeec--CceEEEEeccccc
Confidence            999999876 56655  4578888765433

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.2e-30  Score=207.86  Aligned_cols=241  Identities=20%  Similarity=0.238  Sum_probs=197.6

Q ss_pred             ccccCCCc--eEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCc
Q 018293           59 LKDREKGN--FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  136 (358)
Q Consensus        59 ~~~s~~~~--~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  136 (358)
                      ++|||...  +.+|++  -.+.||+..+.....                           .+......|+++.|-.| +.
T Consensus        32 l~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k---------------------------~~srFk~~v~s~~fR~D-G~   81 (487)
T KOG0310|consen   32 LCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRK---------------------------TFSRFKDVVYSVDFRSD-GR   81 (487)
T ss_pred             EecCCCCCCceEEecc--cEEEEEecchhhhhh---------------------------hHHhhccceeEEEeecC-Ce
Confidence            34566432  344443  579999986533322                           23346688999999999 67


Q ss_pred             EEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEE
Q 018293          137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW  216 (358)
Q Consensus       137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  216 (358)
                      +||+|...|.|+++|+++...++.+.+|+.++..+.|+|.++..+++|+.|+.+++||+.+........+|+..|.|.+|
T Consensus        82 LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~  161 (487)
T KOG0310|consen   82 LLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDI  161 (487)
T ss_pred             EEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecc
Confidence            99999999999999988877889999999999999999999899999999999999999988865567789999999999


Q ss_pred             cCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce
Q 018293          217 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  296 (358)
Q Consensus       217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  296 (358)
                      +|.++.++++|+.||.|++||++..         .....-..|..+|.++.+-|.| ..+++++ ...|+|||+.++.. 
T Consensus       162 ~~~~~hivvtGsYDg~vrl~DtR~~---------~~~v~elnhg~pVe~vl~lpsg-s~iasAg-Gn~vkVWDl~~G~q-  229 (487)
T KOG0310|consen  162 SPANDHIVVTGSYDGKVRLWDTRSL---------TSRVVELNHGCPVESVLALPSG-SLIASAG-GNSVKVWDLTTGGQ-  229 (487)
T ss_pred             ccCCCeEEEecCCCceEEEEEeccC---------CceeEEecCCCceeeEEEcCCC-CEEEEcC-CCeEEEEEecCCce-
Confidence            9988889999999999999999986         2333444689999999999987 7888876 45799999997653 


Q ss_pred             eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      .+.....|...|+|+++..++. .|++|+-||.+++||+.+-+.+.
T Consensus       230 ll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~Kvv~  274 (487)
T KOG0310|consen  230 LLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNYKVVH  274 (487)
T ss_pred             ehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEccceEEEE
Confidence            3344455889999999999998 58899999999999987766554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=2.4e-29  Score=200.03  Aligned_cols=231  Identities=22%  Similarity=0.302  Sum_probs=196.4

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      .+..+.++||+.|..+.++|...++.                           ...+.||...|+.+.++|+ ...++++
T Consensus       228 ~~s~~~ilTGG~d~~av~~d~~s~q~---------------------------l~~~~Gh~kki~~v~~~~~-~~~v~~a  279 (506)
T KOG0289|consen  228 IPSSSKILTGGEDKTAVLFDKPSNQI---------------------------LATLKGHTKKITSVKFHKD-LDTVITA  279 (506)
T ss_pred             cCCCCcceecCCCCceEEEecchhhh---------------------------hhhccCcceEEEEEEeccc-hhheeec
Confidence            34467899999999999999876444                           3467899999999999999 6789999


Q ss_pred             EcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee--ecCCeeeEEEcCC
Q 018293          142 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--VAADVESLAWDPH  219 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~  219 (358)
                      +.|..|+||.............|..+|+.+..+|.| .+|++++.|++..+.|++++........  ..-.+++.+|+||
T Consensus       280 Sad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpD  358 (506)
T KOG0289|consen  280 SADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPD  358 (506)
T ss_pred             CCcceEEeeccccccCccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCC
Confidence            999999999998888888888999999999999999 8999999999999999999887653333  2235899999995


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  299 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  299 (358)
                       +.+|.+|+.||.|++||+.++         ..+..+.+|.++|..++|+.+| .+|+++++|+.|++||+|..+.....
T Consensus       359 -gLifgtgt~d~~vkiwdlks~---------~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~  427 (506)
T KOG0289|consen  359 -GLIFGTGTPDGVVKIWDLKSQ---------TNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTI  427 (506)
T ss_pred             -ceEEeccCCCceEEEEEcCCc---------cccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhccccee
Confidence             569999999999999999987         6788899999999999999998 99999999999999999988754444


Q ss_pred             ecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEE
Q 018293          300 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  334 (358)
Q Consensus       300 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~  334 (358)
                      ..... ..+.++.|.+.|.| |+.++.|=.|++++
T Consensus       428 ~l~~~-~~v~s~~fD~SGt~-L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  428 QLDEK-KEVNSLSFDQSGTY-LGIAGSDLQVYICK  460 (506)
T ss_pred             ecccc-ccceeEEEcCCCCe-EEeecceeEEEEEe
Confidence            44433 37999999999997 66677665555555

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.7e-29  Score=202.29  Aligned_cols=256  Identities=18%  Similarity=0.219  Sum_probs=208.0

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      +++|++++.++++.+|+|.=|++.++.......-...       ..+....+.+...  .+|...|.+++.+++ +++|+
T Consensus       149 als~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~e-------v~k~~~~~~k~~r--~~h~keil~~avS~D-gkyla  218 (479)
T KOG0299|consen  149 ALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDE-------VLKSHGNPLKESR--KGHVKEILTLAVSSD-GKYLA  218 (479)
T ss_pred             EeeccccceeecCCCcceeeeehhcCcccccccccch-------hhhhccCCCCccc--ccccceeEEEEEcCC-CcEEE
Confidence            4489999999999999999999988765432111100       0000111111111  389999999999999 77999


Q ss_pred             EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293          140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  219 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  219 (358)
                      +|+.|..|.||+.++.+.++.+.+|.+.|.+++|-... ..+++++.|+++++|++.....+..+++|...|..+.... 
T Consensus       219 tgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~-  296 (479)
T KOG0299|consen  219 TGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS-  296 (479)
T ss_pred             ecCCCceEEEecCcccchhhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc-
Confidence            99999999999999999999999999999999998766 7799999999999999999998888999999999998776 


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  299 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  299 (358)
                      -+..+.+|+.|+++++|++..          .....+.++.+.+-|++|-.+  ..+++|+.+|.|.+|++.+.+++.+.
T Consensus       297 reR~vtVGgrDrT~rlwKi~e----------esqlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  297 RERCVTVGGRDRTVRLWKIPE----------ESQLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTS  364 (479)
T ss_pred             ccceEEeccccceeEEEeccc----------cceeeeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEe
Confidence            455777788999999999954          344566778889999999875  58999999999999999998876655


Q ss_pred             ecCCC----------CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          300 SRNPK----------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       300 ~~~~~----------~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      ....+          ...|++++..|... ++++|+.+|.|++|.+..+-.
T Consensus       365 ~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  365 RLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             eccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCcc
Confidence            43321          12689999999888 899999999999999998843

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.2e-29  Score=206.06  Aligned_cols=256  Identities=19%  Similarity=0.243  Sum_probs=192.2

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      ++++.|.|-+|++|+.|..|++||+...+....                      ............|.++.|++.+ ..
T Consensus       172 al~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~----------------------~fr~l~P~E~h~i~sl~ys~Tg-~~  228 (641)
T KOG0772|consen  172 ALAVDPSGARFVSGSLDYTVKFWDFQGMDASMR----------------------SFRQLQPCETHQINSLQYSVTG-DQ  228 (641)
T ss_pred             EeeecCCCceeeeccccceEEEEecccccccch----------------------hhhccCcccccccceeeecCCC-Ce
Confidence            445689999999999999999999986543221                      1122223455679999999995 56


Q ss_pred             EEEEEcCCeEEEEECCCCceee------------eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee
Q 018293          138 LASASADKQVKIWDVAAGKCNL------------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  205 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  205 (358)
                      |++.+.....+|+|-...+...            ..++|...++|.+|+|.....|++++.||++++||+...+......
T Consensus       229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi  308 (641)
T KOG0772|consen  229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI  308 (641)
T ss_pred             EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence            6677777899999954333222            2257999999999999998999999999999999998765433222


Q ss_pred             e------ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCC--ceeEEEecCCCCcEEE
Q 018293          206 A------VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLA  277 (358)
Q Consensus       206 ~------~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~l~  277 (358)
                      .      ..-.++.++|++++ ..+++|+.||.|++|+.++...      ......-.+|..  .|+||.|+++| ++|+
T Consensus       309 k~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v------~p~~~vk~AH~~g~~Itsi~FS~dg-~~Ll  380 (641)
T KOG0772|consen  309 KTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTV------RPVMKVKDAHLPGQDITSISFSYDG-NYLL  380 (641)
T ss_pred             eeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCccc------ccceEeeeccCCCCceeEEEecccc-chhh
Confidence            2      23468999999965 4799999999999999876533      123334467766  89999999999 9999


Q ss_pred             EEeCCCcEEEEecCCCCceeeEecCC--CCceeEEEEEcCCCCeEEEEEcc------CCeEEEEEccCCCccccccc
Q 018293          278 TGSTDKMVKLWDLSNNQPSCIASRNP--KAGAVFSVAFSEDSPFVLAIGGS------KGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       278 ~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~------dg~i~vw~~~~~~~~~~~~~  346 (358)
                      +-+.|+++++||++..+. ++....+  ..-+-+.++|||+.+ ++++|..      .|.+.+||..+-+.+.+..-
T Consensus       381 SRg~D~tLKvWDLrq~kk-pL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i  455 (641)
T KOG0772|consen  381 SRGFDDTLKVWDLRQFKK-PLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI  455 (641)
T ss_pred             hccCCCceeeeecccccc-chhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence            999999999999998653 3333332  234567799999999 6888753      46799999988777665443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=2.7e-30  Score=204.16  Aligned_cols=273  Identities=18%  Similarity=0.286  Sum_probs=207.7

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeecee-ecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI-IIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      .|-++...|++|+.+.     .|.+|+....+   .-.+... .......       ++.|.++++++++++.|+.+++|
T Consensus       182 ~~l~~sdtlatgg~Dr-----~Ik~W~v~~~k---~~~~~tLaGs~g~it-------~~d~d~~~~~~iAas~d~~~r~W  246 (459)
T KOG0288|consen  182 EFLRNSDTLATGGSDR-----IIKLWNVLGEK---SELISTLAGSLGNIT-------SIDFDSDNKHVIAASNDKNLRLW  246 (459)
T ss_pred             EEccCcchhhhcchhh-----hhhhhhcccch---hhhhhhhhccCCCcc-------eeeecCCCceEEeecCCCceeee
Confidence            3456667778887776     66677665432   0001100 0011122       34558999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      +++..                           +....+.+|++.|+++.|... ...+++|+.|.+|++||+....+..+
T Consensus       247 nvd~~---------------------------r~~~TLsGHtdkVt~ak~~~~-~~~vVsgs~DRtiK~WDl~k~~C~kt  298 (459)
T KOG0288|consen  247 NVDSL---------------------------RLRHTLSGHTDKVTAAKFKLS-HSRVVSGSADRTIKLWDLQKAYCSKT  298 (459)
T ss_pred             eccch---------------------------hhhhhhcccccceeeehhhcc-ccceeeccccchhhhhhhhhhheecc
Confidence            99753                           444577899999999999887 54599999999999999999888877


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      +- ..+.+..+..++   ..+++|-.|++|++||.+...... .....+.|+++..+++ +..+.+++.|.++.+.|+++
T Consensus       299 ~l-~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~-sv~~gg~vtSl~ls~~-g~~lLsssRDdtl~viDlRt  372 (459)
T KOG0288|consen  299 VL-PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTR-SVPLGGRVTSLDLSMD-GLELLSSSRDDTLKVIDLRT  372 (459)
T ss_pred             cc-ccccccceEecc---eeeeecccccceEEEeccCCceee-EeecCcceeeEeeccC-CeEEeeecCCCceeeeeccc
Confidence            75 345566677663   568899999999999999988776 4455669999999995 55788889999999999998


Q ss_pred             CCCCCCCCCCCccEEEeec----CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293          241 AKSDPDSTSQQSSFTLHAH----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                      .         .....+...    ....+.+.|+|++ .|+++|+.||.|+||++.+++...+.........|+++.|+|.
T Consensus       373 ~---------eI~~~~sA~g~k~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s  442 (459)
T KOG0288|consen  373 K---------EIRQTFSAEGFKCASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS  442 (459)
T ss_pred             c---------cEEEEeeccccccccccceeEECCCC-ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence            7         333333221    2347899999998 9999999999999999999996555554444446999999999


Q ss_pred             CCeEEEEEccCCeEEEEE
Q 018293          317 SPFVLAIGGSKGKLEIWD  334 (358)
Q Consensus       317 ~~~~l~~~~~dg~i~vw~  334 (358)
                      |.+ |++++.++.+.+|.
T Consensus       443 G~~-Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  443 GSG-LLSADKQKAVTLWT  459 (459)
T ss_pred             Cch-hhcccCCcceEecC
Confidence            997 67789999999993

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=1.9e-30  Score=204.96  Aligned_cols=244  Identities=20%  Similarity=0.272  Sum_probs=199.8

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      .|-++...|++|+.|..|++|++....                         ......+.+..+.|+.+.|.++ ++.++
T Consensus       182 ~~l~~sdtlatgg~Dr~Ik~W~v~~~k-------------------------~~~~~tLaGs~g~it~~d~d~~-~~~~i  235 (459)
T KOG0288|consen  182 EFLRNSDTLATGGSDRIIKLWNVLGEK-------------------------SELISTLAGSLGNITSIDFDSD-NKHVI  235 (459)
T ss_pred             EEccCcchhhhcchhhhhhhhhcccch-------------------------hhhhhhhhccCCCcceeeecCC-CceEE
Confidence            345677899999999999999987433                         2344466678899999999999 67888


Q ss_pred             EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293          140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  219 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  219 (358)
                      +++.|+.+++|++...+...++.+|.+.|+++.|.... ..+++|+.|.+|++||+....+... .-..+.+..|...+ 
T Consensus       236 Aas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt-~l~~S~cnDI~~~~-  312 (459)
T KOG0288|consen  236 AASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKT-VLPGSQCNDIVCSI-  312 (459)
T ss_pred             eecCCCceeeeeccchhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheecc-ccccccccceEecc-
Confidence            99999999999999999999999999999999998877 4599999999999999998766552 22344556666543 


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  299 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  299 (358)
                        ..+++|..|++|++||.+..         .+......+. .|+++..++++ ..|++++.|.++.+.|+++.+....+
T Consensus       313 --~~~~SgH~DkkvRfwD~Rs~---------~~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~~~~  379 (459)
T KOG0288|consen  313 --SDVISGHFDKKVRFWDIRSA---------DKTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIRQTF  379 (459)
T ss_pred             --eeeeecccccceEEEeccCC---------ceeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeecccccEEEEe
Confidence              47889999999999999987         6677777665 89999999998 78888899999999999998754444


Q ss_pred             ecCCC--CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293          300 SRNPK--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       300 ~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                      ...+.  ....+.+.|||++.| +++|+.||.|+||++.+++.....-.
T Consensus       380 sA~g~k~asDwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgKlE~~l~~  427 (459)
T KOG0288|consen  380 SAEGFKCASDWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGKLEKVLSL  427 (459)
T ss_pred             eccccccccccceeEECCCCce-eeeccCCCcEEEEEccCceEEEEecc
Confidence            33322  234889999999997 88899999999999999887654433

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=5e-29  Score=199.62  Aligned_cols=244  Identities=25%  Similarity=0.337  Sum_probs=190.7

Q ss_pred             ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      ++.|+||+|||+|+.|..|.||+.++.+.+.                           .+.+|.+.|.+++|-.. ...+
T Consensus       208 ~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---------------------------~~~ghr~~V~~L~fr~g-t~~l  259 (479)
T KOG0299|consen  208 LAVSSDGKYLATGGRDRHVQIWDCDTLEHVK---------------------------VFKGHRGAVSSLAFRKG-TSEL  259 (479)
T ss_pred             EEEcCCCcEEEecCCCceEEEecCcccchhh---------------------------cccccccceeeeeeecC-ccce
Confidence            3448999999999999999999998755443                           46689999999999876 6789


Q ss_pred             EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293          139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  218 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  218 (358)
                      ++++.|.+|++|+++....+.++.+|.+.|.++.-..-+ +.+-+|+.|+++++|++...... ...++.+.+.|++|-.
T Consensus       260 ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesql-ifrg~~~sidcv~~In  337 (479)
T KOG0299|consen  260 YSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQL-IFRGGEGSIDCVAFIN  337 (479)
T ss_pred             eeeecCCceEEEehhHhHHHHHHhCCccceeeechhccc-ceEEeccccceeEEEecccccee-eeeCCCCCeeeEEEec
Confidence            999999999999999999999999999999999888777 77777779999999999544433 3667788999999986


Q ss_pred             CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE---eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC--
Q 018293          219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL---HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN--  293 (358)
Q Consensus       219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~--  293 (358)
                        ...|++|+.+|.|.+|++.+.++.........+...   -.+...|++++..|.. .++++|+.+|.|++|-+..+  
T Consensus       338 --~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  338 --DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             --ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCcc
Confidence              347999999999999999887332111100000000   1122379999999976 89999999999999999887  


Q ss_pred             CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          294 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       294 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      ....+..+. -.+.|++++|+++|..+++..+....+--|-..
T Consensus       415 ~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  415 AINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             ccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence            222333433 568899999999999877777776666555443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.3e-28  Score=187.80  Aligned_cols=245  Identities=18%  Similarity=0.247  Sum_probs=188.4

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      ++.|+|.++.|++++.||++++||+...+...                            .-.|..++.+++|.++  ..
T Consensus        18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----------------------------~~~~~~plL~c~F~d~--~~   67 (323)
T KOG1036|consen   18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----------------------------KFKHGAPLLDCAFADE--ST   67 (323)
T ss_pred             eEEEcCcCCcEEEEeccCcEEEEeccchhhhh----------------------------heecCCceeeeeccCC--ce
Confidence            45568889999999999999999998653222                            1248999999999986  47


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  217 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  217 (358)
                      +++|+.||.|+.+|+.++... .+..|..+++|+.+++.. ..+++|+.|++|++||.+...... .......|.++...
T Consensus        68 ~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~-~~d~~kkVy~~~v~  144 (323)
T KOG1036|consen   68 IVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVG-TFDQGKKVYCMDVS  144 (323)
T ss_pred             EEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccccc-ccccCceEEEEecc
Confidence            999999999999999988654 455699999999999876 789999999999999999744433 33445588888875


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC--c
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--P  295 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~  295 (358)
                         ++.|++|+.+..+.+||+++.....       ...-..-.-.+.|+++.|++ .=.++++-||.|.+=.+...+  .
T Consensus       145 ---g~~LvVg~~~r~v~iyDLRn~~~~~-------q~reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~  213 (323)
T KOG1036|consen  145 ---GNRLVVGTSDRKVLIYDLRNLDEPF-------QRRESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQ  213 (323)
T ss_pred             ---CCEEEEeecCceEEEEEcccccchh-------hhccccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHh
Confidence               4589999999999999999874311       11122334568999999977 556778889998875554431  1


Q ss_pred             eeeEecCCCC---------ceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293          296 SCIASRNPKA---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       296 ~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                      .....+..|.         .+|++|+|+|-.. .||||+.||.|.+||+.+.+.+.++...
T Consensus       214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~rKrl~q~~~~  273 (323)
T KOG1036|consen  214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNRKRLKQLAKY  273 (323)
T ss_pred             hhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcchhhhhhccCC
Confidence            1233344442         3799999999877 5999999999999999998888765443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=4.7e-30  Score=199.65  Aligned_cols=277  Identities=20%  Similarity=0.363  Sum_probs=214.3

Q ss_pred             ccCCC-cEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            3 INPND-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         3 ~~p~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      =+|.. ..+++|..++     +|.+|+...-.....+.-|...+..+.  +           +...+++++.|.+|+.|.
T Consensus        74 khp~~ls~~aSGs~DG-----~VkiWnlsqR~~~~~f~AH~G~V~Gi~--v-----------~~~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   74 KHPNKLSTVASGSCDG-----EVKIWNLSQRECIRTFKAHEGLVRGIC--V-----------TQTSFFTVGDDKTVKQWK  135 (433)
T ss_pred             cCcchhhhhhccccCc-----eEEEEehhhhhhhheeecccCceeeEE--e-----------cccceEEecCCcceeeee
Confidence            35655 6777887787     888888876544455555544443321  1           226678888899999998


Q ss_pred             cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee
Q 018293           82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL  161 (358)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  161 (358)
                      ++..                            +...+ .....+..|.-+.. ...++|++.  .|.|||.+...++..+
T Consensus       136 ~~~~----------------------------p~~ti-lg~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~sm  183 (433)
T KOG0268|consen  136 IDGP----------------------------PLHTI-LGKSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSM  183 (433)
T ss_pred             ccCC----------------------------cceee-eccccccccccccc-cccccccCc--eeeecccccCCcccee
Confidence            8631                            11111 13345666766665 557888876  4899999888888888


Q ss_pred             cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293          162 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  241 (358)
Q Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~  241 (358)
                      .-..+.|.++.|+|....+|+++..|+.|.+||+++..++. .......-+.++|+| ....|+++++|..++.||++..
T Consensus       184 swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l  261 (433)
T KOG0268|consen  184 SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK-KVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNL  261 (433)
T ss_pred             ecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc-eeeeeccccceecCc-cccceeeccccccceehhhhhh
Confidence            87788899999999887888899899999999999988776 444566778899999 6778999999999999999988


Q ss_pred             CCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEE
Q 018293          242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVL  321 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  321 (358)
                              ..++....+|.+.|.++.|+|.| .-+++|+.|.+|+||..+.+...-+. ...--+.|.++.|+.|.+| +
T Consensus       262 --------~~p~~v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdiY-htkRMq~V~~Vk~S~Dsky-i  330 (433)
T KOG0268|consen  262 --------SRPLNVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDIY-HTKRMQHVFCVKYSMDSKY-I  330 (433)
T ss_pred             --------cccchhhcccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhhh-hHhhhheeeEEEEeccccE-E
Confidence                    47788889999999999999999 89999999999999999887632221 1112356999999999997 8


Q ss_pred             EEEccCCeEEEEEccCCCccc
Q 018293          322 AIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       322 ~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      ++|+.|+.|++|.....+.+.
T Consensus       331 ~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  331 ISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             EecCCCcceeeeecchhhhcC
Confidence            899999999999987666554

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3.2e-28  Score=206.11  Aligned_cols=245  Identities=22%  Similarity=0.339  Sum_probs=212.6

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      ++|.+...+++|+ .+.|++|+.++.++++..                             ..+.+.+..|-|. .++++
T Consensus       380 ~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi-----------------------------~~~y~l~~~Fvpg-d~~Iv  428 (888)
T KOG0306|consen  380 CVSSDSILLASGA-GESIKIWNRDTLKCIRTI-----------------------------TCGYILASKFVPG-DRYIV  428 (888)
T ss_pred             EeecCceeeeecC-CCcEEEEEccCcceeEEe-----------------------------ccccEEEEEecCC-CceEE
Confidence            3477777777776 678999999987776643                             2247889999998 67999


Q ss_pred             EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC-----cc-------ceeee
Q 018293          140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-----SG-------FKWAV  207 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~-------~~~~~  207 (358)
                      +|...|.+.+||+.+...+.++++|.+.|.+++.+|++ ..+++|+.|.+|++||..-...     ..       .....
T Consensus       429 ~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel  507 (888)
T KOG0306|consen  429 LGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL  507 (888)
T ss_pred             EeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec
Confidence            99999999999999999999999999999999999999 8899999999999999753211     01       23345


Q ss_pred             cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEE
Q 018293          208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL  287 (358)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i  287 (358)
                      +..|.|+.++|+ +.+++++--|+++++|-+.+.         +...++.+|.-||.|+.++||+ .+++||+.|.+|++
T Consensus       508 ~ddvL~v~~Spd-gk~LaVsLLdnTVkVyflDtl---------KFflsLYGHkLPV~smDIS~DS-klivTgSADKnVKi  576 (888)
T KOG0306|consen  508 EDDVLCVSVSPD-GKLLAVSLLDNTVKVYFLDTL---------KFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKI  576 (888)
T ss_pred             cccEEEEEEcCC-CcEEEEEeccCeEEEEEecce---------eeeeeecccccceeEEeccCCc-CeEEeccCCCceEE
Confidence            688999999995 559999999999999999987         7778899999999999999998 99999999999999


Q ss_pred             EecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcC
Q 018293          288 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  350 (358)
Q Consensus       288 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  350 (358)
                      |-+.-+.  |...+.+|...|.++.|.|... ++.++|.|+.|+-||-.+-+.+..+.+|...
T Consensus       577 WGLdFGD--CHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e  636 (888)
T KOG0306|consen  577 WGLDFGD--CHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE  636 (888)
T ss_pred             eccccch--hhhhhhcccCceeEEEEcccce-eEEEecCcceEEeechhhhhhheeeccchhe
Confidence            9999998  7888999999999999999777 6889999999999999998888887777643

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.4e-29  Score=214.78  Aligned_cols=220  Identities=15%  Similarity=0.261  Sum_probs=178.2

Q ss_pred             ccccC-CCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC---------------------------------------
Q 018293          115 KYKKG-SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA---------------------------------------  154 (358)
Q Consensus       115 ~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~---------------------------------------  154 (358)
                      ...+. .|.+.|+++.|+++ ++|||+|+.|+.|+||.+..                                       
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             eeccccccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            34445 89999999999999 77999999999999998754                                       


Q ss_pred             ---------------------CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeee
Q 018293          155 ---------------------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVES  213 (358)
Q Consensus       155 ---------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  213 (358)
                                           .++++.+.+|.+.|..+.|+.++  +|++++.|.+|++|++...+++. .+.|...|+|
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~-~F~HndfVTc  414 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLK-VFSHNDFVTC  414 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceee-EEecCCeeEE
Confidence                                 01223456899999999999875  89999999999999999888877 7899999999


Q ss_pred             EEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293          214 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  293 (358)
Q Consensus       214 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~  293 (358)
                      ++|+|.+.++|++|+-||.|+||++...         +.+ ....-..-|++++|.|+| +..++|+.+|.+++|+....
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d~---------~Vv-~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~l  483 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISDK---------KVV-DWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGL  483 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCcC---------eeE-eehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCC
Confidence            9999999999999999999999999865         333 333334789999999998 89999999999999999987


Q ss_pred             CceeeEecCCC------CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCc
Q 018293          294 QPSCIASRNPK------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS  349 (358)
Q Consensus       294 ~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~  349 (358)
                      +...-..+..|      ...|+.+.|.|...-.++..+.|..|+|||.++.+.+..+-+...
T Consensus       484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n  545 (712)
T KOG0283|consen  484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN  545 (712)
T ss_pred             eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc
Confidence            75433333222      237999999985543344568899999999987777665544443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.7e-28  Score=183.56  Aligned_cols=225  Identities=18%  Similarity=0.306  Sum_probs=194.7

Q ss_pred             ccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 018293          117 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  196 (358)
Q Consensus       117 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  196 (358)
                      .+++|+.+++.+.++.+ +.+|++++.|.+..+|-..+|+.+.++.+|.+.|.++....+. ..+++|+.|.++++||+.
T Consensus         5 ~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVE   82 (327)
T ss_pred             ccccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcC
Confidence            45689999999999999 6799999999999999988999999999999999999999988 899999999999999999


Q ss_pred             cCCCccceeeecCCeeeEEEcCCCCCeEEEEec-----CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC
Q 018293          197 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-----DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  271 (358)
Q Consensus       197 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  271 (358)
                      +++.+. .+....+|..+.|++.+ ++++..++     .+.|.++|++......  ....+...+..+.+.++...|.|.
T Consensus        83 tGk~la-~~k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~--~s~ep~~kI~t~~skit~a~Wg~l  158 (327)
T KOG0643|consen   83 TGKQLA-TWKTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDI--DSEEPYLKIPTPDSKITSALWGPL  158 (327)
T ss_pred             CCcEEE-EeecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhh--cccCceEEecCCccceeeeeeccc
Confidence            999877 77888999999999954 45555543     4679999999653211  113567788888899999999999


Q ss_pred             CCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcC
Q 018293          272 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  350 (358)
Q Consensus       272 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  350 (358)
                      + .+|++|..||.|.+||+++++. .+.....|...|+.|++++|..+ +++++.|.+-++||+.+-+.++......+-
T Consensus       159 ~-~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~d~T~-FiT~s~Dttakl~D~~tl~v~Kty~te~Pv  234 (327)
T KOG0643|consen  159 G-ETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSRDRTY-FITGSKDTTAKLVDVRTLEVLKTYTTERPV  234 (327)
T ss_pred             C-CEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccCCcce-EEecccCccceeeeccceeeEEEeeecccc
Confidence            8 8999999999999999999863 56666788899999999999995 999999999999999998888776655543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=4.3e-29  Score=200.35  Aligned_cols=263  Identities=19%  Similarity=0.265  Sum_probs=205.9

Q ss_pred             cEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccC
Q 018293            8 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDE   87 (358)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~   87 (358)
                      ..++++...+.    .+.+|+....    ...+.....|.+..|+.-       +|+|.+|+.|+..|.|++|.+.++..
T Consensus        51 ~yllsaq~~rp----~l~vw~i~k~----~~~~q~~v~Pg~v~al~s-------~n~G~~l~ag~i~g~lYlWelssG~L  115 (476)
T KOG0646|consen   51 EYLLSAQLKRP----LLHVWEILKK----DQVVQYIVLPGPVHALAS-------SNLGYFLLAGTISGNLYLWELSSGIL  115 (476)
T ss_pred             hheeeecccCc----cccccccCch----hhhhhhcccccceeeeec-------CCCceEEEeecccCcEEEEEeccccH
Confidence            45555655542    4445554432    112244556666666654       78999999999999999999987665


Q ss_pred             cCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECC---------CCcee
Q 018293           88 VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA---------AGKCN  158 (358)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~---------~~~~~  158 (358)
                      +.                           .+.+|-..|+|+.|+.| +.+|++|+.||.|.+|++.         +-++.
T Consensus       116 L~---------------------------v~~aHYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~  167 (476)
T KOG0646|consen  116 LN---------------------------VLSAHYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL  167 (476)
T ss_pred             HH---------------------------HHHhhccceeEEEEeCC-CcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence            44                           45679999999999999 6799999999999999874         23677


Q ss_pred             eeecccccceeeEEEcCCC-CcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEE
Q 018293          159 LTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD  237 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d  237 (358)
                      ..+..|.-+|+++...+.+ ...+++++.|.++++||+..+..+. ....+..+.+++.+| .+..+++|+.+|.|.+.+
T Consensus       168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl-ti~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~  245 (476)
T KOG0646|consen  168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL-TITFPSSIKAVALDP-AERVVYIGTEEGKIFQNL  245 (476)
T ss_pred             eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE-EEecCCcceeEEEcc-cccEEEecCCcceEEeee
Confidence            8889999999999987763 3689999999999999999987665 566788999999999 677999999999999998


Q ss_pred             cccCCCCC-------CCCCCCccEEEeecCC--ceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCcee
Q 018293          238 IRTAKSDP-------DSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV  308 (358)
Q Consensus       238 ~~~~~~~~-------~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v  308 (358)
                      +.......       ..........+.+|.+  +|+|++++-|| .+|++|+.||.++|||+.+.+  +++......++|
T Consensus       246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q--~iRtl~~~kgpV  322 (476)
T KOG0646|consen  246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQ--CIRTLQTSKGPV  322 (476)
T ss_pred             hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHH--HHHHHhhhcccc
Confidence            87654211       1122344566778877  99999999999 999999999999999999887  565665567889


Q ss_pred             EEEEEcCCCC
Q 018293          309 FSVAFSEDSP  318 (358)
Q Consensus       309 ~~~~~~~~~~  318 (358)
                      +.+.+.|-.+
T Consensus       323 tnL~i~~~~~  332 (476)
T KOG0646|consen  323 TNLQINPLER  332 (476)
T ss_pred             ceeEeecccc
Confidence            9999966544

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=3.5e-30  Score=190.87  Aligned_cols=219  Identities=22%  Similarity=0.388  Sum_probs=180.2

Q ss_pred             EEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccc
Q 018293           23 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKK  102 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  102 (358)
                      .-.+|+.-.+.+...+.|..+..            +++|+.|.++|+||+.+..++|||++..                 
T Consensus        82 takvw~a~tgdelhsf~hkhivk------------~~af~~ds~~lltgg~ekllrvfdln~p-----------------  132 (334)
T KOG0278|consen   82 TAKVWDAVTGDELHSFEHKHIVK------------AVAFSQDSNYLLTGGQEKLLRVFDLNRP-----------------  132 (334)
T ss_pred             hhhhhhhhhhhhhhhhhhhheee------------eEEecccchhhhccchHHHhhhhhccCC-----------------
Confidence            44566666655555554443332            4567999999999999999999999742                 


Q ss_pred             cccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEE
Q 018293          103 KKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILL  182 (358)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  182 (358)
                               ..+...+.+|.+.|..+.|... .+.+++++.|++||+||.++++.++++. ...+|+++..+++| + ++
T Consensus       133 ---------~App~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG-~-il  199 (334)
T KOG0278|consen  133 ---------KAPPKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDG-R-IL  199 (334)
T ss_pred             ---------CCCchhhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCC-C-EE
Confidence                     3333456789999999999987 5688888999999999999999999997 57889999999998 5 55


Q ss_pred             EEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eecCC
Q 018293          183 SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDK  261 (358)
Q Consensus       183 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~  261 (358)
                      +-...+.|.+||..+...+. ....+..|.+..++|+. ..+++|++|..++.||..++         ..+..+ .+|.+
T Consensus       200 Tia~gssV~Fwdaksf~~lK-s~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~Tg---------eEi~~~nkgh~g  268 (334)
T KOG0278|consen  200 TIAYGSSVKFWDAKSFGLLK-SYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTG---------EEIGSYNKGHFG  268 (334)
T ss_pred             EEecCceeEEecccccccee-eccCccccccccccCCC-ceEEecCcceEEEEEeccCC---------ceeeecccCCCC
Confidence            66668899999999877765 55677889999999955 69999999999999999998         444454 88999


Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          262 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       262 ~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      +|.|+.|+|+| ...++|+.||+|++|.+..++.
T Consensus       269 pVhcVrFSPdG-E~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  269 PVHCVRFSPDG-ELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ceEEEEECCCC-ceeeccCCCceEEEEEecCCCc
Confidence            99999999999 8999999999999999877653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=9.7e-29  Score=206.39  Aligned_cols=238  Identities=21%  Similarity=0.373  Sum_probs=199.9

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCc-eEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN-LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI   79 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v   79 (358)
                      +..+|+|..|++|..++     .+.+||..+.+... +..+|    ...+-|++|         ++..+.+|+.||.|..
T Consensus       223 v~ws~~G~~LavG~~~g-----~v~iwD~~~~k~~~~~~~~h----~~rvg~laW---------~~~~lssGsr~~~I~~  284 (484)
T KOG0305|consen  223 VKWSPDGSHLAVGTSDG-----TVQIWDVKEQKKTRTLRGSH----ASRVGSLAW---------NSSVLSSGSRDGKILN  284 (484)
T ss_pred             EEECCCCCEEEEeecCC-----eEEEEehhhccccccccCCc----CceeEEEec---------cCceEEEecCCCcEEE
Confidence            35789999999999988     89999977654433 33334    344458888         4778999999999999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  159 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  159 (358)
                      +|+...+...                          ..+.+|...|..++|+++ +.++|+|+.|+.+.|||....+++.
T Consensus       285 ~dvR~~~~~~--------------------------~~~~~H~qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~~~~p~~  337 (484)
T KOG0305|consen  285 HDVRISQHVV--------------------------STLQGHRQEVCGLKWSPD-GNQLASGGNDNVVFIWDGLSPEPKF  337 (484)
T ss_pred             EEEecchhhh--------------------------hhhhcccceeeeeEECCC-CCeeccCCCccceEeccCCCccccE
Confidence            9997543322                          136689999999999999 7799999999999999998888999


Q ss_pred             eecccccceeeEEEcCCCCcEEEEEe--CCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEE-EecCCeEEEE
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV-SLEDGTIKGF  236 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~dg~i~i~  236 (358)
                      .+..|...|.+++|+|....+||+|+  .|+.|++||..++..+. .....+.|..+.|++....++.+ |..++.|.+|
T Consensus       338 ~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~-~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw  416 (484)
T KOG0305|consen  338 TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID-SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLW  416 (484)
T ss_pred             EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec-ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEE
Confidence            99999999999999998878999875  69999999999887766 55667899999999965544444 5677899999


Q ss_pred             EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293          237 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~  294 (358)
                      +..+.         ..+..+.+|...|..++++||| ..+++|+.|.++++|++-...
T Consensus       417 ~~ps~---------~~~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  417 KYPSM---------KLVAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFDER  464 (484)
T ss_pred             ecccc---------ceeeeecCCcceeEEEEECCCC-CEEEEecccCcEEeccccCCC
Confidence            99986         7888999999999999999998 899999999999999987653

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=6.7e-28  Score=183.96  Aligned_cols=265  Identities=22%  Similarity=0.352  Sum_probs=201.7

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      |.|+|..+.|++++.++     .+.+|+.... +..+...|    ..+.+++++       . +...+++|+.||.|+.+
T Consensus        19 v~f~~~~~~LLvssWDg-----slrlYdv~~~-~l~~~~~~----~~plL~c~F-------~-d~~~~~~G~~dg~vr~~   80 (323)
T KOG1036|consen   19 VKFSPSSSDLLVSSWDG-----SLRLYDVPAN-SLKLKFKH----GAPLLDCAF-------A-DESTIVTGGLDGQVRRY   80 (323)
T ss_pred             EEEcCcCCcEEEEeccC-----cEEEEeccch-hhhhheec----CCceeeeec-------c-CCceEEEeccCceEEEE
Confidence            46889999999999997     7777777664 22222233    233346655       2 46689999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      |++++...                            .+..|..+|.||.+++. ...+++|+.|++|++||.+.......
T Consensus        81 Dln~~~~~----------------------------~igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~~~~~~~  131 (323)
T KOG1036|consen   81 DLNTGNED----------------------------QIGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRNKVVVGT  131 (323)
T ss_pred             EecCCcce----------------------------eeccCCCceEEEEeecc-CCeEEEcccCccEEEEeccccccccc
Confidence            99875543                            23469999999999987 56899999999999999987555555


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc--eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  238 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~  238 (358)
                      +. ....|.++....   +.|++|+.+..+.+||+++......  .......+.|+++.|+++ =+++++-||.|.+=.+
T Consensus       132 ~d-~~kkVy~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~e-Gy~~sSieGRVavE~~  206 (323)
T KOG1036|consen  132 FD-QGKKVYCMDVSG---NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGE-GYVVSSIEGRVAVEYF  206 (323)
T ss_pred             cc-cCceEEEEeccC---CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCC-ceEEEeecceEEEEcc
Confidence            55 345788887764   5699999999999999998765432  234566799999999544 6788889999988666


Q ss_pred             ccCCCCCCCCCCCccEEEeecC---------CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeE
Q 018293          239 RTAKSDPDSTSQQSSFTLHAHD---------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF  309 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~---------~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~  309 (358)
                      ......     ....+.+..|.         -+|++|+|+|-. ..|+||+.||.|.+||+.+.+  .+..+......|.
T Consensus       207 d~s~~~-----~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rK--rl~q~~~~~~SI~  278 (323)
T KOG1036|consen  207 DDSEEA-----QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRK--RLKQLAKYETSIS  278 (323)
T ss_pred             CCchHH-----hhhceeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchh--hhhhccCCCCceE
Confidence            554211     14455666664         379999999986 899999999999999999887  4555666677899


Q ss_pred             EEEEcCCCCeEEEEEcc
Q 018293          310 SVAFSEDSPFVLAIGGS  326 (358)
Q Consensus       310 ~~~~~~~~~~~l~~~~~  326 (358)
                      +++|+.+|. +||.++.
T Consensus       279 slsfs~dG~-~LAia~s  294 (323)
T KOG1036|consen  279 SLSFSMDGS-LLAIASS  294 (323)
T ss_pred             EEEeccCCC-eEEEEec
Confidence            999999999 5877753

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.7e-28  Score=199.35  Aligned_cols=295  Identities=17%  Similarity=0.225  Sum_probs=207.7

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      |.+-|+|-.|++|+-+-     .+..|+...- ...+. +.....|.-.-.+.    ++.|++.|..|++.+.....+|+
T Consensus       173 l~~Dp~GaR~~sGs~Dy-----~v~~wDf~gM-das~~-~fr~l~P~E~h~i~----sl~ys~Tg~~iLvvsg~aqakl~  241 (641)
T KOG0772|consen  173 LAVDPSGARFVSGSLDY-----TVKFWDFQGM-DASMR-SFRQLQPCETHQIN----SLQYSVTGDQILVVSGSAQAKLL  241 (641)
T ss_pred             eeecCCCceeeeccccc-----eEEEEecccc-cccch-hhhccCcccccccc----eeeecCCCCeEEEEecCcceeEE
Confidence            46789999999998875     5555554331 11111 11111111111111    34458999999888888899999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce-ee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NL  159 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~  159 (358)
                      |-+..+......               ...-..-...-+||...++|.+|+|.....+++++.||++++||+...+. ++
T Consensus       242 DRdG~~~~e~~K---------------GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q  306 (641)
T KOG0772|consen  242 DRDGFEIVEFSK---------------GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ  306 (641)
T ss_pred             ccCCceeeeeec---------------cchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence            987544332110               00111223345689999999999999888999999999999999986543 33


Q ss_pred             eec-----ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc---ceeeecC--CeeeEEEcCCCCCeEEEEec
Q 018293          160 TLE-----HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAA--DVESLAWDPHAEHSFVVSLE  229 (358)
Q Consensus       160 ~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~--~i~~~~~~~~~~~~~~~~~~  229 (358)
                      .++     +..-+++.++|++++ ..+++|+.||.|.+|+........   ....|..  .|+|+.|+++ +++|++-+.
T Consensus       307 Vik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d-g~~LlSRg~  384 (641)
T KOG0772|consen  307 VIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD-GNYLLSRGF  384 (641)
T ss_pred             EEeeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc-cchhhhccC
Confidence            332     334578999999999 789999999999999985443221   1234554  8999999995 568999999


Q ss_pred             CCeEEEEEcccCCCCCCCCCCCccEEEeec--CCceeEEEecCCCCcEEEEEeC------CCcEEEEecCCCCceeeEec
Q 018293          230 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGST------DKMVKLWDLSNNQPSCIASR  301 (358)
Q Consensus       230 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~  301 (358)
                      |+++++||++..+        +++....+-  ..+-+.++|+|+. .+|++|+.      .|.+.+||..+.+  .+..+
T Consensus       385 D~tLKvWDLrq~k--------kpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d--~v~ki  453 (641)
T KOG0772|consen  385 DDTLKVWDLRQFK--------KPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLD--TVYKI  453 (641)
T ss_pred             CCceeeeeccccc--------cchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEecccee--eEEEe
Confidence            9999999999874        444443332  2345788999998 89999865      4679999998877  45555


Q ss_pred             CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       302 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      .-....|..+.|+|.-+. +..|+.||.+++|--
T Consensus       454 ~i~~aSvv~~~WhpkLNQ-i~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  454 DISTASVVRCLWHPKLNQ-IFAGSGDGTAHVYYD  486 (641)
T ss_pred             cCCCceEEEEeecchhhh-eeeecCCCceEEEEC
Confidence            555788999999998775 555788899988643

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.2e-27  Score=172.90  Aligned_cols=251  Identities=22%  Similarity=0.338  Sum_probs=193.6

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      +++|+|.|.+.|+|+...+++|-.....-..+.-..            ..+.........-+.|.+.|.|.+|+|+ +.+
T Consensus        37 av~fhp~g~lyavgsnskt~ric~yp~l~~~r~~he------------a~~~pp~v~~kr~khhkgsiyc~~ws~~-gel  103 (350)
T KOG0641|consen   37 AVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHE------------AAKQPPSVLCKRNKHHKGSIYCTAWSPC-GEL  103 (350)
T ss_pred             eEEecCCCceEEeccCCceEEEEccccccCcccccc------------cccCCCeEEeeeccccCccEEEEEecCc-cCe
Confidence            556799999999999999999987653222111000            0001112222344579999999999999 679


Q ss_pred             EEEEEcCCeEEEEECCCCce-----eeeecccccceeeEEEcCC---CCcEEEEEe-CCCcEEEEEcccCCCccceeeec
Q 018293          138 LASASADKQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWNHH---SPQILLSGS-FDRSVVMKDARISTHSGFKWAVA  208 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~  208 (358)
                      +++|+.|.+|++.-.+...+     -.++.-|.+.|..++|..+   ++.+|++++ .|..|++-|...++......+|.
T Consensus       104 iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght  183 (350)
T KOG0641|consen  104 IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT  183 (350)
T ss_pred             EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc
Confidence            99999999999987654332     2456779999999999643   335666655 46778888888888887788888


Q ss_pred             CCeeeE-EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee--c-----CCceeEEEecCCCCcEEEEEe
Q 018293          209 ADVESL-AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--H-----DKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       209 ~~i~~~-~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~-----~~~i~~i~~~~~~~~~l~~~~  280 (358)
                      +.|.++ .|+   +-++++|+.|.+|++||++-.         .++..+..  |     .+.|.+++..|.| ++|++|.
T Consensus       184 ghilalyswn---~~m~~sgsqdktirfwdlrv~---------~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~  250 (350)
T KOG0641|consen  184 GHILALYSWN---GAMFASGSQDKTIRFWDLRVN---------SCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGH  250 (350)
T ss_pred             ccEEEEEEec---CcEEEccCCCceEEEEeeecc---------ceeeeccCcccCCCcccceeEEEEECCCc-ceeeecc
Confidence            888776 343   458999999999999999976         33433321  1     3679999999998 9999999


Q ss_pred             CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          281 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       281 ~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      .|....+||++.++  .++.+..|...|.++.|+|...| +.+++.|..|++-|+..
T Consensus       251 ~dssc~lydirg~r--~iq~f~phsadir~vrfsp~a~y-llt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  251 ADSSCMLYDIRGGR--MIQRFHPHSADIRCVRFSPGAHY-LLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             CCCceEEEEeeCCc--eeeeeCCCccceeEEEeCCCceE-EEEecccceEEEeeccc
Confidence            99999999999998  68889999999999999999886 77899999999999864

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=9.2e-28  Score=201.55  Aligned_cols=221  Identities=23%  Similarity=0.384  Sum_probs=189.2

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      ++-++++|+.|+.|.+|.....+                           +...+.+|+..|+|++...+ +. +++|+.
T Consensus        70 ~~~~l~~g~~D~~i~v~~~~~~~---------------------------P~~~LkgH~snVC~ls~~~~-~~-~iSgSW  120 (745)
T KOG0301|consen   70 DKGRLVVGGMDTTIIVFKLSQAE---------------------------PLYTLKGHKSNVCSLSIGED-GT-LISGSW  120 (745)
T ss_pred             cCcceEeecccceEEEEecCCCC---------------------------chhhhhccccceeeeecCCc-Cc-eEeccc
Confidence            55679999999999999987543                           34467899999999998877 43 899999


Q ss_pred             CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCe
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS  223 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  223 (358)
                      |.++++|..  +++...+++|+..|+++...|++  .+++|+.|.+|++|.-  ++......+|...|..+++-++.  .
T Consensus       121 D~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~--~  192 (745)
T KOG0301|consen  121 DSTAKVWRI--GELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS--H  192 (745)
T ss_pred             ccceEEecc--hhhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC--C
Confidence            999999975  56677799999999999999986  7899999999999986  55666677899999999999843  5


Q ss_pred             EEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCC
Q 018293          224 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP  303 (358)
Q Consensus       224 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  303 (358)
                      |++++.||.|+.|++. +         ..+..+.+|+..+.++...+++ ..++++++|++++||+..  +  +.+.+..
T Consensus       193 flScsNDg~Ir~w~~~-g---------e~l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~--e--~~q~I~l  257 (745)
T KOG0301|consen  193 FLSCSNDGSIRLWDLD-G---------EVLLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD--E--CVQVITL  257 (745)
T ss_pred             eEeecCCceEEEEecc-C---------ceeeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecC--c--eEEEEec
Confidence            9999999999999994 3         7888999999999999977766 799999999999999987  3  5666665


Q ss_pred             CCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          304 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       304 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      ....|+++.+-++|.  +++|+.||.|+||.....
T Consensus       258 PttsiWsa~~L~NgD--Ivvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  258 PTTSIWSAKVLLNGD--IVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             CccceEEEEEeeCCC--EEEeccCceEEEEEeccc
Confidence            566899999999998  678999999999988743

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.5e-27  Score=182.06  Aligned_cols=247  Identities=20%  Similarity=0.303  Sum_probs=189.8

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec-CCCCCcEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNIL  138 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l  138 (358)
                      .|.+.|+++|+|+.|++|+|||.....                       ...........|.+.|..+.| +|..++.+
T Consensus        20 s~D~~GRRmAtCSsDq~vkI~d~~~~s-----------------------~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvv   76 (361)
T KOG2445|consen   20 SFDFYGRRMATCSSDQTVKIWDSTSDS-----------------------GTWSCTSSWRAHDGSIWRVVWAHPEFGQVV   76 (361)
T ss_pred             eecccCceeeeccCCCcEEEEeccCCC-----------------------CceEEeeeEEecCCcEEEEEecCccccceE
Confidence            348889999999999999999975322                       234445566689999999999 56778899


Q ss_pred             EEEEcCCeEEEEECCC---------CceeeeecccccceeeEEEcCCC-CcEEEEEeCCCcEEEEEcccCCCcc------
Q 018293          139 ASASADKQVKIWDVAA---------GKCNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSG------  202 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~------  202 (358)
                      |+++.|+++.||.-..         .....++......|+.++|.|.. +-.+++++.||.++||+.-......      
T Consensus        77 A~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~  156 (361)
T KOG2445|consen   77 ATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH  156 (361)
T ss_pred             EEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh
Confidence            9999999999997521         12344556677899999999853 2578999999999999865432111      


Q ss_pred             -------ceeeecCCeeeEEEcCC--CCCeEEEEecC-----CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEe
Q 018293          203 -------FKWAVAADVESLAWDPH--AEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY  268 (358)
Q Consensus       203 -------~~~~~~~~i~~~~~~~~--~~~~~~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  268 (358)
                             ....+..+..|+.|+|.  .+.++++|+.+     +.++||........     ...+..+..|..+|+.++|
T Consensus       157 Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-----w~kva~L~d~~dpI~di~w  231 (361)
T KOG2445|consen  157 EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-----WLKVAELPDHTDPIRDISW  231 (361)
T ss_pred             hhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-----eeeehhcCCCCCcceeeee
Confidence                   11134566889999874  24578888765     57899988765321     2456677899999999999


Q ss_pred             cCCCC---cEEEEEeCCCcEEEEecCCC------------------CceeeEecCCCCceeEEEEEcCCCCeEEEEEccC
Q 018293          269 NPLVP---NLLATGSTDKMVKLWDLSNN------------------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK  327 (358)
Q Consensus       269 ~~~~~---~~l~~~~~dg~i~i~d~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  327 (358)
                      .|+-+   .+|++++.|| |+||.+...                  +...+..+..|.+.|..+.|+-.|. +|++.|.|
T Consensus       232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdD  309 (361)
T KOG2445|consen  232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDD  309 (361)
T ss_pred             ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCC
Confidence            99643   4799999999 999998741                  1234556789999999999999999 79999999


Q ss_pred             CeEEEEEcc
Q 018293          328 GKLEIWDTL  336 (358)
Q Consensus       328 g~i~vw~~~  336 (358)
                      |.|++|...
T Consensus       310 G~VRLWkan  318 (361)
T KOG2445|consen  310 GCVRLWKAN  318 (361)
T ss_pred             ceeeehhhh
Confidence            999999864

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=2.8e-28  Score=197.66  Aligned_cols=230  Identities=19%  Similarity=0.360  Sum_probs=198.6

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      .|||+-|++|++-.++.|||+....                         ..+...+..-.-...+++.+|| .++.+++
T Consensus       474 ~pdgrtLivGGeastlsiWDLAapT-------------------------prikaeltssapaCyALa~spD-akvcFsc  527 (705)
T KOG0639|consen  474 LPDGRTLIVGGEASTLSIWDLAAPT-------------------------PRIKAELTSSAPACYALAISPD-AKVCFSC  527 (705)
T ss_pred             cCCCceEEeccccceeeeeeccCCC-------------------------cchhhhcCCcchhhhhhhcCCc-cceeeee
Confidence            7999999999999999999997422                         2223344445567889999999 7899999


Q ss_pred             EcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCC
Q 018293          142 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  221 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  221 (358)
                      +.||.|.|||+.+...++.|++|.+.+.|+..+++| ..|-+|+-|++|+.||++.+.... .....+.|.++..+|++ 
T Consensus       528 csdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlq-qhdF~SQIfSLg~cP~~-  604 (705)
T KOG0639|consen  528 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQ-QHDFSSQIFSLGYCPTG-  604 (705)
T ss_pred             ccCCcEEEEEcccceeeecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhh-hhhhhhhheecccCCCc-
Confidence            999999999999999999999999999999999999 889999999999999999988766 55677889999999965 


Q ss_pred             CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec
Q 018293          222 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR  301 (358)
Q Consensus       222 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  301 (358)
                      ..+++|-+++.+.+.....          ...+.+..|.+.|.++.|.+.| +++++.+.|..+..|...-+.  .++..
T Consensus       605 dWlavGMens~vevlh~sk----------p~kyqlhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGa--siFqs  671 (705)
T KOG0639|consen  605 DWLAVGMENSNVEVLHTSK----------PEKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGA--SIFQS  671 (705)
T ss_pred             cceeeecccCcEEEEecCC----------ccceeecccccEEEEEEecccC-ceeeecCchhhhhhccCcccc--ceeec
Confidence            5899999999998887765          4567788899999999999999 899999999999999998887  34443


Q ss_pred             CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       302 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      . ...+|.++..+.|.+| +++|+.|....||.+
T Consensus       672 k-E~SsVlsCDIS~ddky-IVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  672 K-ESSSVLSCDISFDDKY-IVTGSGDKKATVYEV  703 (705)
T ss_pred             c-ccCcceeeeeccCceE-EEecCCCcceEEEEE
Confidence            3 3578999999999995 899999998888875

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=9.7e-29  Score=188.82  Aligned_cols=219  Identities=23%  Similarity=0.383  Sum_probs=180.7

Q ss_pred             cccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC------------C------ceeeeecccccceeeEEEcCCC
Q 018293          116 YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA------------G------KCNLTLEHHTDKVQAVAWNHHS  177 (358)
Q Consensus       116 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~  177 (358)
                      ..+..|+.++.+.+|+|| +.++|+|+.|..|+|.|++.            +      -.++++..|.++|+++.|+|..
T Consensus       106 ~ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             EEEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            455679999999999999 67999999999999999871            1      2466777899999999999998


Q ss_pred             CcEEEEEeCCCcEEEEEcccCCCcc--ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEE
Q 018293          178 PQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT  255 (358)
Q Consensus       178 ~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  255 (358)
                       .+|++++.|++|+++|........  .......++.++.|+|. +.++++|+.-..+++||+.+.+.-.      ....
T Consensus       185 -~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs-GefllvgTdHp~~rlYdv~T~Qcfv------sanP  256 (430)
T KOG0640|consen  185 -TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS-GEFLLVGTDHPTLRLYDVNTYQCFV------SANP  256 (430)
T ss_pred             -heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC-CceEEEecCCCceeEEeccceeEee------ecCc
Confidence             999999999999999998654332  23345678999999995 5599999999999999999873211      0112


Q ss_pred             EeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC-CC-CceeEEEEEcCCCCeEEEEEccCCeEEEE
Q 018293          256 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-PK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIW  333 (358)
Q Consensus       256 ~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~vw  333 (358)
                      -..|.+.|+++.+++.+ ++.++++.||.|++||--+++  |+..+. .| ...|.+..|..+|+| +.+.+.|..+++|
T Consensus       257 d~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~r--Cv~t~~~AH~gsevcSa~Ftkn~ky-iLsSG~DS~vkLW  332 (430)
T KOG0640|consen  257 DDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNR--CVRTIGNAHGGSEVCSAVFTKNGKY-ILSSGKDSTVKLW  332 (430)
T ss_pred             ccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHH--HHHHHHhhcCCceeeeEEEccCCeE-EeecCCcceeeee
Confidence            24688999999999998 899999999999999988877  454443 34 457999999999997 6678899999999


Q ss_pred             EccCCCcccccccc
Q 018293          334 DTLSDAGISNRFSK  347 (358)
Q Consensus       334 ~~~~~~~~~~~~~~  347 (358)
                      ++.++..+.+..+.
T Consensus       333 Ei~t~R~l~~YtGA  346 (430)
T KOG0640|consen  333 EISTGRMLKEYTGA  346 (430)
T ss_pred             eecCCceEEEEecC
Confidence            99999998877665

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.7e-29  Score=222.00  Aligned_cols=280  Identities=24%  Similarity=0.365  Sum_probs=221.3

Q ss_pred             ceEEEEEEeccCCCC-CceEeeceeecCCcccceeeecCCccccCCCc----eEEecCCCCeEEEEEcccccCcCceeec
Q 018293           20 SHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN----FMAVGSMEPAIEIWDLDVIDEVQPHVIL   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~----~l~~g~~dg~i~vw~~~~~~~~~~~~~~   94 (358)
                      ..++++-++...+.. ...+..+  .....-.++.|-       +.|.    ++|.|..||.|.+||.....        
T Consensus        39 ~slEifeld~~~~~~dlk~~~s~--~s~~rF~kL~W~-------~~g~~~~GlIaGG~edG~I~ly~p~~~~--------  101 (1049)
T KOG0307|consen   39 ASLEIFELDFSDESSDLKPVGSL--QSSNRFNKLAWG-------SYGSHSHGLIAGGLEDGNIVLYDPASII--------  101 (1049)
T ss_pred             cccceeeecccCccccccccccc--cccccceeeeec-------ccCCCccceeeccccCCceEEecchhhc--------
Confidence            466777776655321 1222222  122223367774       3333    58999999999999987420        


Q ss_pred             CCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee--cccccceeeEE
Q 018293           95 GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL--EHHTDKVQAVA  172 (358)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~  172 (358)
                                   .......+.....|++.|..+.|++..+++||+|+.||.|.|||+..-+.....  ....+.|.+++
T Consensus       102 -------------~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls  168 (1049)
T KOG0307|consen  102 -------------ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS  168 (1049)
T ss_pred             -------------cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence                         123344555677899999999999998889999999999999999876544444  22467899999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeec--CCeeeEEEcCCCCCeEEEEecCC---eEEEEEcccCCCCCCC
Q 018293          173 WNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA--ADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDS  247 (358)
Q Consensus       173 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~~~~  247 (358)
                      |+..-.++|++++.+|.+.|||++..+.+.....+.  ..+..++|+|++...+++++.|.   .|.+||+|..      
T Consensus       169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a------  242 (1049)
T KOG0307|consen  169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA------  242 (1049)
T ss_pred             cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc------
Confidence            999887899999999999999999987766444433  34789999999888888887664   6999999987      


Q ss_pred             CCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC
Q 018293          248 TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK  327 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  327 (358)
                        ..++..+.+|...|.++.|++.++++|++++.|+.|.+|+.++++  .+..+......+..+.|+|....++++++-|
T Consensus       243 --ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE--vl~~~p~~~nW~fdv~w~pr~P~~~A~asfd  318 (1049)
T KOG0307|consen  243 --SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE--VLGELPAQGNWCFDVQWCPRNPSVMAAASFD  318 (1049)
T ss_pred             --CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce--EeeecCCCCcceeeeeecCCCcchhhhheec
Confidence              467788899999999999999888999999999999999999998  5777777778899999999988789999999


Q ss_pred             CeEEEEEccCCC
Q 018293          328 GKLEIWDTLSDA  339 (358)
Q Consensus       328 g~i~vw~~~~~~  339 (358)
                      |.|.||.+.+..
T Consensus       319 gkI~I~sl~~~~  330 (1049)
T KOG0307|consen  319 GKISIYSLQGTD  330 (1049)
T ss_pred             cceeeeeeecCC
Confidence            999999998755

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.1e-27  Score=201.94  Aligned_cols=313  Identities=19%  Similarity=0.272  Sum_probs=220.9

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCC---ceEeeceeecCCcccceeeecCCccccCC----CceEEecCC
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP---NLYVHHHIIIPAFPLCMAWLDCPLKDREK----GNFMAVGSM   73 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~~l~~g~~   73 (358)
                      +.|.|....|.+..++.     .+|+|+..+...+   .....|..    -+..++-+||.+.-.+.    ..-++|++.
T Consensus       330 ~~Fdet~~klscVYndh-----SlYvWDvrD~~kvgk~~s~lyHS~----ciW~Ve~~p~nv~~~~~aclp~~cF~TCSs  400 (1080)
T KOG1408|consen  330 CQFDETTDKLSCVYNDH-----SLYVWDVRDVNKVGKCSSMLYHSA----CIWDVENLPCNVHSPTAACLPRGCFTTCSS  400 (1080)
T ss_pred             EEecCCCceEEEEEcCc-----eEEEEeccccccccceeeeeeccc----eeeeeccccccccCcccccCCccceeEecC
Confidence            36888999999998887     8999998664221   11222221    12244445544332211    234899999


Q ss_pred             CCeEEEEEcccccCcC--ceeecCC------c-ccc-cccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           74 EPAIEIWDLDVIDEVQ--PHVILGG------I-DEE-KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        74 dg~i~vw~~~~~~~~~--~~~~~~~------~-~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      |++|++|+++....-.  ...++..      + +.. ............+.....-+-...+.+++.+|+ +++||+|..
T Consensus       401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~-gqhLAsGDr  479 (1080)
T KOG1408|consen  401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD-GQHLASGDR  479 (1080)
T ss_pred             CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC-cceecccCc
Confidence            9999999997621111  0001000      0 000 000000011111122223345567999999999 779999999


Q ss_pred             CCeEEEEECCCCceeeeecccccceeeEEEcCC--CCcEEEEEeCCCcEEEEEcccCCC-ccceeeecCC----------
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTH-SGFKWAVAAD----------  210 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~----------  210 (358)
                      -|+++||++..-+....+..|+..|.|+.|+..  +..+|++++.|..|.+||+..+-. ......|...          
T Consensus       480 ~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~g  559 (1080)
T KOG1408|consen  480 GGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNG  559 (1080)
T ss_pred             cCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecC
Confidence            999999999999888999999999999999853  336899999999999999864322 1222223333          


Q ss_pred             ---------------------------------------eeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCC
Q 018293          211 ---------------------------------------VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ  251 (358)
Q Consensus       211 ---------------------------------------i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~  251 (358)
                                                             +..++..|. ..++++++.|..|+|||+.++         +
T Consensus       560 ln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~-~k~v~t~cQDrnirif~i~sg---------K  629 (1080)
T KOG1408|consen  560 LNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT-SKLVVTVCQDRNIRIFDIESG---------K  629 (1080)
T ss_pred             CceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC-cceEEEEecccceEEEecccc---------c
Confidence                                                   445555563 458899999999999999998         4


Q ss_pred             ccEEE---eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC
Q 018293          252 SSFTL---HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG  328 (358)
Q Consensus       252 ~~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  328 (358)
                      ....+   ..|.+....+...|.| .|+++.+.|+++.++|..+++  ++....+|...|+.+.|.+|-++ |++.+.||
T Consensus       630 q~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgE--cvA~m~GHsE~VTG~kF~nDCkH-lISvsgDg  705 (1080)
T KOG1408|consen  630 QVKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGE--CVAQMTGHSEAVTGVKFLNDCKH-LISVSGDG  705 (1080)
T ss_pred             eeeeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccch--hhhhhcCcchheeeeeecccchh-heeecCCc
Confidence            44454   3566778889999998 999999999999999999998  78889999999999999999996 88899999


Q ss_pred             eEEEEEccC
Q 018293          329 KLEIWDTLS  337 (358)
Q Consensus       329 ~i~vw~~~~  337 (358)
                      .|.||.+..
T Consensus       706 CIFvW~lp~  714 (1080)
T KOG1408|consen  706 CIFVWKLPL  714 (1080)
T ss_pred             eEEEEECch
Confidence            999999864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=2.3e-26  Score=191.85  Aligned_cols=279  Identities=13%  Similarity=0.104  Sum_probs=187.0

Q ss_pred             CcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceE-EecCCCCeEEEEEcccc
Q 018293            7 DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLDVI   85 (358)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~vw~~~~~   85 (358)
                      +++++++..++     .+++|+...++....+..+     ..+.++       .|+|+++.+ ++++.++.|++||..++
T Consensus         1 ~~~~~s~~~d~-----~v~~~d~~t~~~~~~~~~~-----~~~~~l-------~~~~dg~~l~~~~~~~~~v~~~d~~~~   63 (300)
T TIGR03866         1 EKAYVSNEKDN-----TISVIDTATLEVTRTFPVG-----QRPRGI-------TLSKDGKLLYVCASDSDTIQVIDLATG   63 (300)
T ss_pred             CcEEEEecCCC-----EEEEEECCCCceEEEEECC-----CCCCce-------EECCCCCEEEEEECCCCeEEEEECCCC
Confidence            35667776665     8888887654322222221     112234       448999876 67778999999998764


Q ss_pred             cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccc
Q 018293           86 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT  165 (358)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  165 (358)
                      +...                           .+..+. .+..++|+|++..++++++.|+.+++||+++++.+..+.. .
T Consensus        64 ~~~~---------------------------~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~  114 (300)
T TIGR03866        64 EVIG---------------------------TLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-G  114 (300)
T ss_pred             cEEE---------------------------eccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-C
Confidence            4321                           111222 2467889999554445566789999999998887777753 3


Q ss_pred             cceeeEEEcCCCCcEEEEEeCCC-cEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCC
Q 018293          166 DKVQAVAWNHHSPQILLSGSFDR-SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD  244 (358)
Q Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~  244 (358)
                      ..+.+++|+|++ .+++++..++ .+.+||.++.+.... ......+..++|+|++..+++++..++.|++||+++.   
T Consensus       115 ~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~---  189 (300)
T TIGR03866       115 VEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDN-VLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR---  189 (300)
T ss_pred             CCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEE-EEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc---
Confidence            446889999999 7777777665 467789876654332 2233456789999976544455567999999999876   


Q ss_pred             CCCCCCCccEEEeec-------CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293          245 PDSTSQQSSFTLHAH-------DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS  317 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  317 (358)
                            +....+..+       ......++|+|++...+++.+.++.+.+||+++++..  ... .+...+.+++|+|+|
T Consensus       190 ------~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~--~~~-~~~~~~~~~~~~~~g  260 (300)
T TIGR03866       190 ------KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL--DYL-LVGQRVWQLAFTPDE  260 (300)
T ss_pred             ------eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE--EEE-EeCCCcceEEECCCC
Confidence                  333332211       1123568899998433455556778999999887642  222 233468899999999


Q ss_pred             CeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          318 PFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       318 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      ++++++++.+|.|.+||+.+++.+.+.-
T Consensus       261 ~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       261 KYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             CEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            9644445679999999999988776653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.7e-26  Score=172.42  Aligned_cols=265  Identities=15%  Similarity=0.233  Sum_probs=207.8

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCC---CCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDG---GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI   77 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i   77 (358)
                      ++++-+|..++.+..+.     .+.+|+....   .+...+.|+...     -.+.|-      .+..++|++++.|..|
T Consensus        26 v~wn~~g~~lasgs~dk-----tv~v~n~e~~r~~~~~~~~gh~~sv-----dql~w~------~~~~d~~atas~dk~i   89 (313)
T KOG1407|consen   26 VAWNCDGTKLASGSFDK-----TVSVWNLERDRFRKELVYRGHTDSV-----DQLCWD------PKHPDLFATASGDKTI   89 (313)
T ss_pred             EEEcccCceeeecccCC-----ceEEEEecchhhhhhhcccCCCcch-----hhheeC------CCCCcceEEecCCceE
Confidence            35677899999997776     6666665543   112223333222     244553      2457789999999999


Q ss_pred             EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce
Q 018293           78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC  157 (358)
Q Consensus        78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  157 (358)
                      ++||+..+.+.....                            .+..=.-+.|+|+ +.+++.+..|..|...|.++.+.
T Consensus        90 r~wd~r~~k~~~~i~----------------------------~~~eni~i~wsp~-g~~~~~~~kdD~it~id~r~~~~  140 (313)
T KOG1407|consen   90 RIWDIRSGKCTARIE----------------------------TKGENINITWSPD-GEYIAVGNKDDRITFIDARTYKI  140 (313)
T ss_pred             EEEEeccCcEEEEee----------------------------ccCcceEEEEcCC-CCEEEEecCcccEEEEEecccce
Confidence            999997655443221                            2233345789999 66999999999999999998887


Q ss_pred             eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEE
Q 018293          158 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD  237 (358)
Q Consensus       158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d  237 (358)
                      ....+ ....+..+.|+.++ .+++.....|.|.|...-..+++.....|.....|+.|+|+ +++|++|+.|-.+-+||
T Consensus       141 ~~~~~-~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~-GryfA~GsADAlvSLWD  217 (313)
T KOG1407|consen  141 VNEEQ-FKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD-GRYFATGSADALVSLWD  217 (313)
T ss_pred             eehhc-ccceeeeeeecCCC-CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCC-CceEeeccccceeeccC
Confidence            76665 45667889999766 67777777899999998888888878889999999999995 56999999999999999


Q ss_pred             cccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293          238 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS  317 (358)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  317 (358)
                      +...         .++..+..+.-+|..+.|+.+| ++|++|++|..|-|=+++++.  .+.++ .+.++...++|+|..
T Consensus       218 ~~EL---------iC~R~isRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd--~~~eI-~~~~~t~tVAWHPk~  284 (313)
T KOG1407|consen  218 VDEL---------ICERCISRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGD--RVWEI-PCEGPTFTVAWHPKR  284 (313)
T ss_pred             hhHh---------hhheeeccccCceEEEEeccCc-ceeeccCccceEEeEecccCC--eEEEe-eccCCceeEEecCCC
Confidence            9987         8888999999999999999998 999999999999999999998  45444 367889999999998


Q ss_pred             CeEEEEEccC
Q 018293          318 PFVLAIGGSK  327 (358)
Q Consensus       318 ~~~l~~~~~d  327 (358)
                      . +||-++.|
T Consensus       285 ~-LLAyA~dd  293 (313)
T KOG1407|consen  285 P-LLAYACDD  293 (313)
T ss_pred             c-eeeEEecC
Confidence            8 67666554

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=1.1e-27  Score=210.80  Aligned_cols=253  Identities=21%  Similarity=0.297  Sum_probs=202.6

Q ss_pred             cccCCCceEEecC--CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           60 KDREKGNFMAVGS--MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        60 ~~s~~~~~l~~g~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      ..+|||..+|||+  .||.++||+.+.......               .......+.......|.+.|+|+.|+|+ +.+
T Consensus        20 dv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~---------------~~~~~l~k~l~~m~~h~~sv~CVR~S~d-G~~   83 (942)
T KOG0973|consen   20 DVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKE---------------EKNENLPKHLCTMDDHDGSVNCVRFSPD-GSY   83 (942)
T ss_pred             EecCCceeEecCCccccccceeeccccccchhh---------------hhhcccchhheeeccccCceeEEEECCC-CCe
Confidence            3489999999999  999999999864221100               0000124555667789999999999999 779


Q ss_pred             EEEEEcCCeEEEEECCC------------------CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC
Q 018293          138 LASASADKQVKIWDVAA------------------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  199 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  199 (358)
                      ||+|+.|+.|.||....                  .++...+.+|...|..++|+|++ .++++++.|++|.+||.++.+
T Consensus        84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~  162 (942)
T KOG0973|consen   84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFE  162 (942)
T ss_pred             EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccce
Confidence            99999999999998762                  13567788999999999999998 999999999999999999998


Q ss_pred             CccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec------CCceeEEEecCCCC
Q 018293          200 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVP  273 (358)
Q Consensus       200 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~i~~i~~~~~~~  273 (358)
                      .......|.+.|..+.|+|- +++|++-+.|++|++|++.+.         ...+.+..+      ...+..+.|+||| 
T Consensus       163 ~~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw---------~i~k~It~pf~~~~~~T~f~RlSWSPDG-  231 (942)
T KOG0973|consen  163 LLKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDW---------GIEKSITKPFEESPLTTFFLRLSWSPDG-  231 (942)
T ss_pred             eeeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccc---------eeeEeeccchhhCCCcceeeecccCCCc-
Confidence            88888899999999999995 569999999999999997664         333333322      3457899999999 


Q ss_pred             cEEEEEeC----CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCC--------C-------Ce-EEEEEccCCeEEEE
Q 018293          274 NLLATGST----DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED--------S-------PF-VLAIGGSKGKLEIW  333 (358)
Q Consensus       274 ~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~-------~~-~l~~~~~dg~i~vw  333 (358)
                      .+|++...    -.++.|.+..+.+  .-..+.+|.+++.+++|+|.        |       .| ++|+|+.|++|-||
T Consensus       232 ~~las~nA~n~~~~~~~IieR~tWk--~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW  309 (942)
T KOG0973|consen  232 HHLASPNAVNGGKSTIAIIERGTWK--VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW  309 (942)
T ss_pred             CeecchhhccCCcceeEEEecCCce--eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence            78887533    2358888886665  56778899999999999981        1       12 78999999999999


Q ss_pred             EccCCCccc
Q 018293          334 DTLSDAGIS  342 (358)
Q Consensus       334 ~~~~~~~~~  342 (358)
                      .....+++.
T Consensus       310 ~T~~~RPl~  318 (942)
T KOG0973|consen  310 NTALPRPLF  318 (942)
T ss_pred             ecCCCCchh
Confidence            987766554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.96  E-value=1.4e-27  Score=186.88  Aligned_cols=251  Identities=21%  Similarity=0.347  Sum_probs=195.4

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      +..+.|+-+..|.|+||++...-......-           ...+....+++..+.+|...=++|+|||-..-.|++|..
T Consensus       164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~-----------~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc  232 (440)
T KOG0302|consen  164 NEVLCASWSENGRVQVWDLAPHLNALSEPG-----------LEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDC  232 (440)
T ss_pred             CcceeeeecccCcEEEEEchhhhhhhcCcc-----------ccccccccCceEEecccCccceeeecccccccccccCcc
Confidence            556778888899999999864211110000           011225677888899999999999999964446889988


Q ss_pred             CCeEEEEECCCCce---eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc--ceeeecCCeeeEEEcC
Q 018293          144 DKQVKIWDVAAGKC---NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDP  218 (358)
Q Consensus       144 dg~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~  218 (358)
                      -+.|++|...++.-   ..-+.+|+..|..++|+|.....|++|+-||+|+|||+|.+....  ....|.+.|+.+.|+.
T Consensus       233 ~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr  312 (440)
T KOG0302|consen  233 VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR  312 (440)
T ss_pred             ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC
Confidence            89999999988753   234567999999999999988999999999999999999884332  2356889999999998


Q ss_pred             CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC----
Q 018293          219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ----  294 (358)
Q Consensus       219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~----  294 (358)
                      ..+ +|++|+.||+++|||+|.-+.      .+++..+.-|..+|+++.|+|.....|++++.|.+|.+||+....    
T Consensus       313 ~~~-lLasG~DdGt~~iwDLR~~~~------~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee  385 (440)
T KOG0302|consen  313 REP-LLASGGDDGTLSIWDLRQFKS------GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE  385 (440)
T ss_pred             Ccc-eeeecCCCceEEEEEhhhccC------CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence            555 999999999999999998754      478899999999999999999877899999999999999985422    


Q ss_pred             -------------ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEE
Q 018293          295 -------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  334 (358)
Q Consensus       295 -------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~  334 (358)
                                   +..++... -...+..+.|++.-+-++++-+.|| +.||.
T Consensus       386 ~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  386 IDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             hccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence                         11222222 2345778999998776788888887 45554

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3e-27  Score=181.45  Aligned_cols=303  Identities=19%  Similarity=0.246  Sum_probs=222.4

Q ss_pred             CcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEccccc
Q 018293            7 DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVID   86 (358)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~   86 (358)
                      .+++.++..+-     ...+|..+.+.-...|..|...++    |       ++|++.+.++++++.|++-.||...-.=
T Consensus       160 qpi~gtASADh-----TA~iWs~Esg~CL~~Y~GH~GSVN----s-------ikfh~s~~L~lTaSGD~taHIW~~av~~  223 (481)
T KOG0300|consen  160 QPICGTASADH-----TARIWSLESGACLATYTGHTGSVN----S-------IKFHNSGLLLLTASGDETAHIWKAAVNW  223 (481)
T ss_pred             Ccceeeccccc-----ceeEEeeccccceeeeccccccee----e-------EEeccccceEEEccCCcchHHHHHhhcC
Confidence            44444444433     455666665544455666644443    3       4558999999999999999999843211


Q ss_pred             CcCceeecCCcccc------cc-------cccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECC
Q 018293           87 EVQPHVILGGIDEE------KK-------KKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  153 (358)
Q Consensus        87 ~~~~~~~~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  153 (358)
                      .........+.+.+      .+       ........-..+...+.+|...|.+..|-.. ++.+++++.|.+..+||++
T Consensus       224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g-g~Q~vTaSWDRTAnlwDVE  302 (481)
T KOG0300|consen  224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG-GQQMVTASWDRTANLWDVE  302 (481)
T ss_pred             cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC-cceeeeeeccccceeeeec
Confidence            11110000000000      00       0011122345567788999999999999987 6789999999999999999


Q ss_pred             CCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC-CccceeeecCCeeeEEEcCCCCCeEEEEecCCe
Q 018293          154 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  232 (358)
Q Consensus       154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~  232 (358)
                      +++++..+.+|....+.++-+|.. +++++++.|.+.++||++..- ....+.+|...|+++.|..+  ..+++|+.|.+
T Consensus       303 tge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d--d~vVSgSDDrT  379 (481)
T KOG0300|consen  303 TGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD--DRVVSGSDDRT  379 (481)
T ss_pred             cCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC--CceeecCCCce
Confidence            999999999999999999999998 899999999999999998432 33456789999999999984  36999999999


Q ss_pred             EEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce--eeEecCCCCceeEE
Q 018293          233 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS--CIASRNPKAGAVFS  310 (358)
Q Consensus       233 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~v~~  310 (358)
                      |++||+++..        .++..+. ..++++.++.+..+ ..++.-..+..|++||+...+..  +.....+|..-|.|
T Consensus       380 vKvWdLrNMR--------splATIR-tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c  449 (481)
T KOG0300|consen  380 VKVWDLRNMR--------SPLATIR-TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTC  449 (481)
T ss_pred             EEEeeecccc--------Ccceeee-cCCccceeEeecCC-ceEEeccCCceEEEEecCCCccccCCcccccccceeeee
Confidence            9999999873        4555554 46789999999855 68888888899999999876532  22345688889999


Q ss_pred             EEEcCCCC-eEEEEEccCCeEEEEEccCCC
Q 018293          311 VAFSEDSP-FVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       311 ~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      ++|..+.. .-|.+++-|..+.=|++....
T Consensus       450 ~AW~eehp~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  450 CAWLEEHPACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             eeccccCcccccccccccceeeeeEecccC
Confidence            99976532 016788999999999987543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=1e-27  Score=182.05  Aligned_cols=222  Identities=23%  Similarity=0.385  Sum_probs=185.6

Q ss_pred             CCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc------------ee---eeecccccceeeEEEcCCCCcEEEEE
Q 018293          120 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK------------CN---LTLEHHTDKVQAVAWNHHSPQILLSG  184 (358)
Q Consensus       120 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~------------~~---~~~~~~~~~v~~~~~~~~~~~~l~~~  184 (358)
                      .|.+.|+++...+..++++++|+.||.|.+||++...            ++   ..-.+|...|.++.|-|-+..++.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            5889999999999889999999999999999997542            11   11136788999999999776899999


Q ss_pred             eCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC--CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCc
Q 018293          185 SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA  262 (358)
Q Consensus       185 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  262 (358)
                      +.|.++++||..+.+... .+..++.|.+-+|+|-.  ..++++|..+-.|++.|+.++         ...+.+.+|...
T Consensus       121 SFDhtlKVWDtnTlQ~a~-~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---------s~sH~LsGHr~~  190 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQEAV-DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---------SFSHTLSGHRDG  190 (397)
T ss_pred             cccceEEEeecccceeeE-EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC---------cceeeeccccCc
Confidence            999999999999877655 56777888888888842  357888999999999999998         788999999999


Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEecCCC-------------CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCe
Q 018293          263 VCTISYNPLVPNLLATGSTDKMVKLWDLSNN-------------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK  329 (358)
Q Consensus       263 i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  329 (358)
                      |.++.|+|..+..|++|+.||.|++||++..             ++..+.....|.+.++.++|..++.+ +++++.|..
T Consensus       191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~r  269 (397)
T KOG4283|consen  191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDDR  269 (397)
T ss_pred             eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-hhhccCccc
Confidence            9999999988788999999999999999753             12223335568889999999999997 888899999


Q ss_pred             EEEEEccCCCccccccccCcCCC
Q 018293          330 LEIWDTLSDAGISNRFSKYSKPK  352 (358)
Q Consensus       330 i~vw~~~~~~~~~~~~~~~~~~~  352 (358)
                      +++|+..+|+...+.+++....+
T Consensus       270 ~r~wn~~~G~ntl~~~g~~~~n~  292 (397)
T KOG4283|consen  270 IRVWNMESGRNTLREFGPIIHNQ  292 (397)
T ss_pred             eEEeecccCcccccccccccccc
Confidence            99999999998777776654433

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.5e-26  Score=185.82  Aligned_cols=241  Identities=17%  Similarity=0.247  Sum_probs=194.4

Q ss_pred             CCceEEecCC-CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293           64 KGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  142 (358)
Q Consensus        64 ~~~~l~~g~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  142 (358)
                      .+.+++++.. ...|.+|.+...+......                           --.++|.|++-+|. +.+|+.|+
T Consensus        49 ~~~yllsaq~~rp~l~vw~i~k~~~~~q~~---------------------------v~Pg~v~al~s~n~-G~~l~ag~  100 (476)
T KOG0646|consen   49 NNEYLLSAQLKRPLLHVWEILKKDQVVQYI---------------------------VLPGPVHALASSNL-GYFLLAGT  100 (476)
T ss_pred             chhheeeecccCccccccccCchhhhhhhc---------------------------ccccceeeeecCCC-ceEEEeec
Confidence            3467766654 4589999987544433222                           23478999999999 77888888


Q ss_pred             cCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC---------CCccceeeecCCeee
Q 018293          143 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS---------THSGFKWAVAADVES  213 (358)
Q Consensus       143 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~i~~  213 (358)
                      ..|.+.+|.+.+|.++..+.+|-..|+++.|+.|+ .+|++|+.||.|.+|++..-         ........|.-+|+.
T Consensus       101 i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITD  179 (476)
T KOG0646|consen  101 ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITD  179 (476)
T ss_pred             ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEE
Confidence            99999999999999999999999999999999999 89999999999999987531         233344567788999


Q ss_pred             EEEcCC-CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293          214 LAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  292 (358)
Q Consensus       214 ~~~~~~-~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~  292 (358)
                      +...+. -..++++.+.|.++++||+..+         ..+..+. ....+.+++..|-+ ..+++|+.+|.|.+.++..
T Consensus       180 l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---------~LLlti~-fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~  248 (476)
T KOG0646|consen  180 LQIGSGGTNARLYTASEDRTIKLWDLSLG---------VLLLTIT-FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFK  248 (476)
T ss_pred             EEecCCCccceEEEecCCceEEEEEeccc---------eeeEEEe-cCCcceeEEEcccc-cEEEecCCcceEEeeehhc
Confidence            888763 2458999999999999999987         4454443 46789999999977 8999999999999988754


Q ss_pred             CC--------------ceeeEecCCCCc--eeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          293 NQ--------------PSCIASRNPKAG--AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       293 ~~--------------~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      ..              ......+.+|.+  .|+|++.+-||. +|++|+.||.++|||+.+.+++++..
T Consensus       249 ~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  249 LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             CCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHHHHHHh
Confidence            32              123445667877  999999999999 79999999999999999988887655

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.6e-27  Score=182.94  Aligned_cols=235  Identities=23%  Similarity=0.350  Sum_probs=199.0

Q ss_pred             CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293           63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  142 (358)
Q Consensus        63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  142 (358)
                      .....+.+++.|.+.+||.++++.++.                           .+.||.+.|++|+|++. +.++++++
T Consensus       158 ~tqpi~gtASADhTA~iWs~Esg~CL~---------------------------~Y~GH~GSVNsikfh~s-~~L~lTaS  209 (481)
T KOG0300|consen  158 STQPICGTASADHTARIWSLESGACLA---------------------------TYTGHTGSVNSIKFHNS-GLLLLTAS  209 (481)
T ss_pred             cCCcceeecccccceeEEeecccccee---------------------------eecccccceeeEEeccc-cceEEEcc
Confidence            344588899999999999998877655                           56689999999999999 77999999


Q ss_pred             cCCeEEEEECC------------------------------------C----CceeeeecccccceeeEEEcCCCCcEEE
Q 018293          143 ADKQVKIWDVA------------------------------------A----GKCNLTLEHHTDKVQAVAWNHHSPQILL  182 (358)
Q Consensus       143 ~dg~v~iwd~~------------------------------------~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~  182 (358)
                      .|++.+||...                                    .    ..++..+.+|...|.+..|...+ +.++
T Consensus       210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~v  288 (481)
T KOG0300|consen  210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMV  288 (481)
T ss_pred             CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceee
Confidence            99999999621                                    0    02345677899999999999888 8899


Q ss_pred             EEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCc
Q 018293          183 SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA  262 (358)
Q Consensus       183 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  262 (358)
                      +++.|.+..+||+++++.+..+.+|....+.++-+| ...++++++.|.+.++||++..        ...+..+.+|...
T Consensus       289 TaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea--------I~sV~VFQGHtdt  359 (481)
T KOG0300|consen  289 TASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA--------IQSVAVFQGHTDT  359 (481)
T ss_pred             eeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhh--------cceeeeecccccc
Confidence            999999999999999999998999999999999999 5668999999999999999965        4677889999999


Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          263 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       263 i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      |+++.|..+.  .+++|+.|.+|++||+++.+. .+..+. -..+++.++.+..++ +++.--.+..|++||+.....
T Consensus       360 VTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRs-plATIR-tdS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~Rl  432 (481)
T KOG0300|consen  360 VTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRS-PLATIR-TDSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNRL  432 (481)
T ss_pred             eeEEEEecCC--ceeecCCCceEEEeeeccccC-cceeee-cCCccceeEeecCCc-eEEeccCCceEEEEecCCCcc
Confidence            9999999864  789999999999999998763 233332 356789999998887 688778888999999966543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.1e-27  Score=195.81  Aligned_cols=276  Identities=18%  Similarity=0.296  Sum_probs=213.3

Q ss_pred             CCCcEEEEEEecCCCceEEEEEEeccCCCC----C--ceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293            5 PNDAVIVCARNEDDVSHLEVYILEESDGGD----P--NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE   78 (358)
Q Consensus         5 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~   78 (358)
                      |+++.|++|+.++     .+..|+......    +  ....+|..-+..+++           -.+++-|++++.|-+|+
T Consensus        35 ~~~ryLfTgGRDg-----~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL-----------~~~~~tlIS~SsDtTVK   98 (735)
T KOG0308|consen   35 PNGRYLFTGGRDG-----IIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIIL-----------CGNGKTLISASSDTTVK   98 (735)
T ss_pred             CCCceEEecCCCc-----eEEEeccccccCCcccchhhhhhhhHhHHhhHHh-----------hcCCCceEEecCCceEE
Confidence            5677799998886     666666544321    1  111233222222222           35788999999999999


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec-CCCCCcEEEEEEcCCeEEEEECCCC--
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNILASASADKQVKIWDVAAG--  155 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~s~~~dg~v~iwd~~~~--  155 (358)
                      +|+.....                         ......+..|.+.|.|++. .++ ..++|+|+.|+.|.+||++++  
T Consensus        99 ~W~~~~~~-------------------------~~c~stir~H~DYVkcla~~ak~-~~lvaSgGLD~~IflWDin~~~~  152 (735)
T KOG0308|consen   99 VWNAHKDN-------------------------TFCMSTIRTHKDYVKCLAYIAKN-NELVASGGLDRKIFLWDINTGTA  152 (735)
T ss_pred             EeecccCc-------------------------chhHhhhhcccchheeeeecccC-ceeEEecCCCccEEEEEccCcch
Confidence            99987432                         1233355679999999999 566 779999999999999999977  


Q ss_pred             ceeeee--------c-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEE
Q 018293          156 KCNLTL--------E-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV  226 (358)
Q Consensus       156 ~~~~~~--------~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  226 (358)
                      +.+..+        . ++..+|++++.++.+ ..+++|+..+.+++||.++.+.+..+.+|..-|.++..+++ +..+++
T Consensus       153 ~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD-Gt~~ls  230 (735)
T KOG0308|consen  153 TLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD-GTRLLS  230 (735)
T ss_pred             hhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCC-CCeEee
Confidence            223222        2 678899999999999 89999999999999999999998888899999999999995 568999


Q ss_pred             EecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCc
Q 018293          227 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG  306 (358)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  306 (358)
                      ++.||+|++||+...         +++.++..|...+.++..+|+- ..+++|+.||.|..=|+++......  +-....
T Consensus       231 ~sSDgtIrlWdLgqQ---------rCl~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~tl--ick~da  298 (735)
T KOG0308|consen  231 ASSDGTIRLWDLGQQ---------RCLATYIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKSTL--ICKEDA  298 (735)
T ss_pred             cCCCceEEeeecccc---------ceeeeEEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhheE--eecCCC
Confidence            999999999999987         8899999999999999999987 8999999999999999998542122  122345


Q ss_pred             eeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          307 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       307 ~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      +|..+..+...+. +-+++.|+.|+-|...-
T Consensus       299 Pv~~l~~~~~~~~-~WvtTtds~I~rW~~~~  328 (735)
T KOG0308|consen  299 PVLKLHLHEHDNS-VWVTTTDSSIKRWKLEP  328 (735)
T ss_pred             chhhhhhccccCC-ceeeeccccceecCCcc
Confidence            6777777754443 34567888898887653

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=2.7e-25  Score=180.43  Aligned_cols=273  Identities=20%  Similarity=0.318  Sum_probs=206.4

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      .|+|.++.+++.+..+     .++.|....+........-+..-....+|+.+       .++|+ ++||..+|.|.||+
T Consensus       207 ~FHPtd~nliit~Gk~-----H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F-------~engd-viTgDS~G~i~Iw~  273 (626)
T KOG2106|consen  207 TFHPTDPNLIITCGKG-----HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF-------LENGD-VITGDSGGNILIWS  273 (626)
T ss_pred             EeccCCCcEEEEeCCc-----eEEEEEccCCceEEEeeccccccceEEEEEEE-------cCCCC-EEeecCCceEEEEe
Confidence            5899988888887766     78888776652211111111111245556655       67775 88999999999999


Q ss_pred             cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee---
Q 018293           82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN---  158 (358)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---  158 (358)
                      ..+....+                           ....|.+.|.+++...+ + .|++|+.|..|..||-. -+.+   
T Consensus       274 ~~~~~~~k---------------------------~~~aH~ggv~~L~~lr~-G-tllSGgKDRki~~Wd~~-y~k~r~~  323 (626)
T KOG2106|consen  274 KGTNRISK---------------------------QVHAHDGGVFSLCMLRD-G-TLLSGGKDRKIILWDDN-YRKLRET  323 (626)
T ss_pred             CCCceEEe---------------------------EeeecCCceEEEEEecC-c-cEeecCccceEEecccc-ccccccc
Confidence            85432222                           12269999999999998 5 46679999999999832 1110   


Q ss_pred             --------------------------------------eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293          159 --------------------------------------LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  200 (358)
Q Consensus       159 --------------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  200 (358)
                                                            ....+|.+....++.+|+. ..+++++.|+.+++|+   ...
T Consensus       324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~---~~k  399 (626)
T KOG2106|consen  324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN---DHK  399 (626)
T ss_pred             cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEcc---CCc
Confidence                                                  0223577888899999998 7899999999999999   333


Q ss_pred             ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe
Q 018293          201 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       201 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~  280 (358)
                      .........++.|+.|+|.+  .+++|+..|...+.|.++.         . ...+.....++++++|+|+| .+||.|+
T Consensus       400 ~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~---------~-lv~~~~d~~~ls~v~ysp~G-~~lAvgs  466 (626)
T KOG2106|consen  400 LEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQ---------D-LVTIHTDNEQLSVVRYSPDG-AFLAVGS  466 (626)
T ss_pred             eeEEEEecCceeEeeccCcc--eEEEeeccceEEEEecccc---------e-eEEEEecCCceEEEEEcCCC-CEEEEec
Confidence            44455678899999999965  8999999999999999874         3 33444448899999999999 9999999


Q ss_pred             CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          281 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       281 ~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      .|+.|++|.+..+.......-..+.++|+.+.|++|++| +.+-+.|-.|..|..
T Consensus       467 ~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~-~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  467 HDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF-LVSNSGDYEILYWKP  520 (626)
T ss_pred             CCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce-EEeccCceEEEEEcc
Confidence            999999999987665444444445589999999999996 888999999999943

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=2.8e-26  Score=179.64  Aligned_cols=222  Identities=24%  Similarity=0.384  Sum_probs=181.5

Q ss_pred             ceeccccccCCCcccEEEEecCCCC-CcEEEEEEcCCeEEEEECC----------------CCceeeeecccccceeeEE
Q 018293          110 KKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVA----------------AGKCNLTLEHHTDKVQAVA  172 (358)
Q Consensus       110 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~----------------~~~~~~~~~~~~~~v~~~~  172 (358)
                      +.........+|.+.++.+..++-+ ..+.++-+..|.|.||++.                ..+++.++.+|...=+.++
T Consensus       139 ~~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~Ld  218 (440)
T KOG0302|consen  139 RKPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLD  218 (440)
T ss_pred             ccccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeee
Confidence            3455555666788888888877763 3466667888999999985                2356778889999999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEEcccCCC---ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCC
Q 018293          173 WNHHSPQILLSGSFDRSVVMKDARISTH---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS  249 (358)
Q Consensus       173 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~  249 (358)
                      |+|-....+++|.--+.|++|...++.-   ...+..|...|..++|+|.....|++|+.||+|+|||+|.+..      
T Consensus       219 WSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~------  292 (440)
T KOG0302|consen  219 WSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK------  292 (440)
T ss_pred             cccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc------
Confidence            9995545688888889999999887642   1234568999999999999999999999999999999998843      


Q ss_pred             CCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc-eeeEecCCCCceeEEEEEcCCCCeEEEEEccCC
Q 018293          250 QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG  328 (358)
Q Consensus       250 ~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  328 (358)
                       +.......|.+.|+.|.|+... .+|++|+.||+++|||++.-+. ..+..+..|..+|+++.|+|.....+++++.|.
T Consensus       293 -~~~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~  370 (440)
T KOG0302|consen  293 -KAAVSTKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN  370 (440)
T ss_pred             -cceeEeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC
Confidence             3444458999999999999987 5999999999999999987542 256678889999999999997776899999999


Q ss_pred             eEEEEEccCCC
Q 018293          329 KLEIWDTLSDA  339 (358)
Q Consensus       329 ~i~vw~~~~~~  339 (358)
                      .|.+||+.-..
T Consensus       371 QitiWDlsvE~  381 (440)
T KOG0302|consen  371 QITIWDLSVEA  381 (440)
T ss_pred             cEEEEEeeccC
Confidence            99999997543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=1.4e-26  Score=175.84  Aligned_cols=216  Identities=20%  Similarity=0.332  Sum_probs=171.4

Q ss_pred             CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceec--cccccCCCcccEEEEecCCCCCcEEEE
Q 018293           63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSS--IKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      -.|+|+++|+.||.|.|||++.....+...+..              +...  .+....+|+-.|..+.|-|-+.-++.+
T Consensus        54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~--------------k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIA--------------KHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccceEEeecCCCccEEEEEeccccchhhcccee--------------heeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            368999999999999999997544222111110              0111  222345799999999999987779999


Q ss_pred             EEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCC--cEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293          141 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  218 (358)
Q Consensus       141 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  218 (358)
                      ++.|.++++||..+.+....|+ .++.|.+-+++|-..  .++++|..|-.|++.|+..+.....+.+|...|.++.|+|
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp  198 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP  198 (397)
T ss_pred             ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence            9999999999999988887777 567888888888431  4678888899999999999999988999999999999999


Q ss_pred             CCCCeEEEEecCCeEEEEEcccCCCCC------CCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293          219 HAEHSFVVSLEDGTIKGFDIRTAKSDP------DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  292 (358)
Q Consensus       219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~  292 (358)
                      ..+..+++|+.||.|++||++......      .....+.+..-..|.+.+++++|..++ .++++++.|..+++|+..+
T Consensus       199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMES  277 (397)
T ss_pred             CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeeccc
Confidence            999999999999999999999763210      111112233456788999999999998 8999999999999999987


Q ss_pred             CC
Q 018293          293 NQ  294 (358)
Q Consensus       293 ~~  294 (358)
                      ++
T Consensus       278 G~  279 (397)
T KOG4283|consen  278 GR  279 (397)
T ss_pred             Cc
Confidence            65

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=3.2e-27  Score=184.03  Aligned_cols=232  Identities=16%  Similarity=0.210  Sum_probs=189.0

Q ss_pred             cCCC-ceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           62 REKG-NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        62 s~~~-~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      +|.. ..+++|+.||.|+|||+...+                           ....+..|.+.|..|++..   ..+++
T Consensus        75 hp~~ls~~aSGs~DG~VkiWnlsqR~---------------------------~~~~f~AH~G~V~Gi~v~~---~~~~t  124 (433)
T KOG0268|consen   75 HPNKLSTVASGSCDGEVKIWNLSQRE---------------------------CIRTFKAHEGLVRGICVTQ---TSFFT  124 (433)
T ss_pred             CcchhhhhhccccCceEEEEehhhhh---------------------------hhheeecccCceeeEEecc---cceEE
Confidence            5554 679999999999999997533                           3446678999999999986   36889


Q ss_pred             EEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC
Q 018293          141 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  220 (358)
Q Consensus       141 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  220 (358)
                      ++.|.+|+.|.++. .++.++.+ ...+..+.-+..+ ..++++++  .|.|||.+...++....-....+.++.|+|..
T Consensus       125 vgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE  199 (433)
T KOG0268|consen  125 VGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVE  199 (433)
T ss_pred             ecCCcceeeeeccC-Ccceeeec-ccccccccccccc-ccccccCc--eeeecccccCCccceeecCCCceeEEecCCCc
Confidence            99999999999765 46666653 4556777776666 67888765  58999998888877665566789999999988


Q ss_pred             CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe
Q 018293          221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  300 (358)
Q Consensus       221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  300 (358)
                      ..+|+++..|+.|.+||++..         .++..+... ..-+.|+|+|.. ..+++|++|..++.||++..+. ++..
T Consensus       200 TsILas~~sDrsIvLyD~R~~---------~Pl~KVi~~-mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~-p~~v  267 (433)
T KOG0268|consen  200 TSILASCASDRSIVLYDLRQA---------SPLKKVILT-MRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSR-PLNV  267 (433)
T ss_pred             chheeeeccCCceEEEecccC---------Cccceeeee-ccccceecCccc-cceeeccccccceehhhhhhcc-cchh
Confidence            888999999999999999998         445444332 334789999965 7888999999999999998763 5677


Q ss_pred             cCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       301 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      ..+|.+.|.++.|+|.|+. +++|+.|.+|+||....+..-
T Consensus       268 ~~dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~SR  307 (433)
T KOG0268|consen  268 HKDHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHSR  307 (433)
T ss_pred             hcccceeEEEeccCCCcch-hccccccceEEEeecCCCcch
Confidence            8899999999999999996 999999999999999876643

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=3.8e-28  Score=204.76  Aligned_cols=222  Identities=25%  Similarity=0.409  Sum_probs=195.4

Q ss_pred             CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293           63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  142 (358)
Q Consensus        63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  142 (358)
                      ..++.+++|+.|-.+-+|.+.....                           ...+.+|..+|.++.|++. ..+|++|+
T Consensus        38 ~s~r~~~~Gg~~~k~~L~~i~kp~~---------------------------i~S~~~hespIeSl~f~~~-E~Llaags   89 (825)
T KOG0267|consen   38 KSSRSLVTGGEDEKVNLWAIGKPNA---------------------------ITSLTGHESPIESLTFDTS-ERLLAAGS   89 (825)
T ss_pred             ccceeeccCCCceeeccccccCCch---------------------------hheeeccCCcceeeecCcc-hhhhcccc
Confidence            3578899999999999999864322                           2246789999999999999 77999999


Q ss_pred             cCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCC
Q 018293          143 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  222 (358)
Q Consensus       143 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  222 (358)
                      .+|+|++||++..+.++++.+|...+.++.|+|-+ .+++.++.|+.+++||++...+......|...+..+.|+|+ +.
T Consensus        90 asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~-Gr  167 (825)
T KOG0267|consen   90 ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPD-GR  167 (825)
T ss_pred             cCCceeeeehhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecCCcceeEEEeecCC-Cc
Confidence            99999999999999999999999999999999999 88899999999999999988888777778888999999995 56


Q ss_pred             eEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC
Q 018293          223 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  302 (358)
Q Consensus       223 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  302 (358)
                      +++.|++|..+++||+..+         +....+..|...+.++.|+|.. .++++|+.|+++++||+++-+  .+....
T Consensus       168 ~v~~g~ed~tvki~d~~ag---------k~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe--~I~s~~  235 (825)
T KOG0267|consen  168 WVASGGEDNTVKIWDLTAG---------KLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFE--VISSGK  235 (825)
T ss_pred             eeeccCCcceeeeeccccc---------ccccccccccccccccccCchh-hhhccCCCCceeeeeccceeE--EeeccC
Confidence            9999999999999999987         7788899999999999999987 889999999999999999776  455555


Q ss_pred             CCCceeEEEEEcCCCCeEEEEEccC
Q 018293          303 PKAGAVFSVAFSEDSPFVLAIGGSK  327 (358)
Q Consensus       303 ~~~~~v~~~~~~~~~~~~l~~~~~d  327 (358)
                      .....|.+.+|+|++. .+++|..+
T Consensus       236 ~~~~~v~~~~fn~~~~-~~~~G~q~  259 (825)
T KOG0267|consen  236 PETDGVRSLAFNPDGK-IVLSGEQI  259 (825)
T ss_pred             CccCCceeeeecCCce-eeecCchh
Confidence            5677899999999998 57766554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.2e-26  Score=175.46  Aligned_cols=249  Identities=17%  Similarity=0.269  Sum_probs=190.5

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      .||+.|.+||+|..||.|.|||+.+..                           .-..+.+|..+|++++||++ +++|+
T Consensus        30 ~Fs~~G~~lAvGc~nG~vvI~D~~T~~---------------------------iar~lsaH~~pi~sl~WS~d-gr~Ll   81 (405)
T KOG1273|consen   30 QFSRWGDYLAVGCANGRVVIYDFDTFR---------------------------IARMLSAHVRPITSLCWSRD-GRKLL   81 (405)
T ss_pred             EeccCcceeeeeccCCcEEEEEccccc---------------------------hhhhhhccccceeEEEecCC-CCEee
Confidence            458999999999999999999998644                           33366789999999999999 66999


Q ss_pred             EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee----ecCCeeeEE
Q 018293          140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----VAADVESLA  215 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~  215 (358)
                      +++.|..|.+||+..|.+++.++ ..++|+.+.|+|...+.+++.-.+..-.+-++..+........    ......+..
T Consensus        82 tsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~  160 (405)
T KOG1273|consen   82 TSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGV  160 (405)
T ss_pred             eecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccc
Confidence            99999999999999999999998 6789999999998767777766666666666665332221111    112233445


Q ss_pred             EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecC-CceeEEEecCCCCcEEEEEeCCCcEEEEecCCC-
Q 018293          216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN-  293 (358)
Q Consensus       216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~-  293 (358)
                      |++ .++++++|+..|.+.+||..+.         +++..+.... ..|..+.++..| ..|+.-+.|..|+.|+++.- 
T Consensus       161 fdr-~g~yIitGtsKGkllv~~a~t~---------e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~  229 (405)
T KOG1273|consen  161 FDR-RGKYIITGTSKGKLLVYDAETL---------ECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDID  229 (405)
T ss_pred             ccC-CCCEEEEecCcceEEEEecchh---------eeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhc
Confidence            777 5669999999999999999987         6666665554 778999999988 89999999999999998731 


Q ss_pred             ------CceeeEecCC--CCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293          294 ------QPSCIASRNP--KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       294 ------~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                            ++.....++.  ....-.+++|+.+|.|++++...-..++||.-..|..++-+.+..
T Consensus       230 ~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k  292 (405)
T KOG1273|consen  230 DEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK  292 (405)
T ss_pred             ccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence                  2111111111  223455789999999877766667789999999998887555544

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.3e-25  Score=194.44  Aligned_cols=244  Identities=16%  Similarity=0.232  Sum_probs=195.0

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      .|.|+|+++++++.||.|++|+........+                          .+..+...|.+++....   +|+
T Consensus        20 ~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~--------------------------ti~~~g~~v~~ia~~s~---~f~   70 (933)
T KOG1274|consen   20 CYDPDGEFICTCGSDGDIRKWKTNSDEEEPE--------------------------TIDISGELVSSIACYSN---HFL   70 (933)
T ss_pred             EEcCCCCEEEEecCCCceEEeecCCcccCCc--------------------------hhhccCceeEEEeeccc---ceE
Confidence            3489999999999999999999875421111                          11126778888887644   899


Q ss_pred             EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293          140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  219 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  219 (358)
                      +|+.+++|.+|.+..++.-..+....-++++++++-+| .+++.|+.|-.|++.++.+........+|.++|.++.|+|.
T Consensus        71 ~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~  149 (933)
T KOG1274|consen   71 TGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK  149 (933)
T ss_pred             EeeccceEEEeeCCCCCccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCC
Confidence            99999999999998887665666667889999999999 89999999999999999999888889999999999999995


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  299 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  299 (358)
                       ++++++.+.||.|++||+.++..........+...+. ....+..++|+|++ ..++....|+.|++|+..+.......
T Consensus       150 -~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~-~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~f~L  226 (933)
T KOG1274|consen  150 -GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI-LSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQFKL  226 (933)
T ss_pred             -CCEEEEEecCceEEEEEcccchhhhhcccCCcccccc-ccceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeheee
Confidence             5699999999999999999874322211111111111 14567889999998 45666667999999999998865555


Q ss_pred             ecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          300 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       300 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ....+...+..++|+|+|.| ||+++.||.|.|||..+
T Consensus       227 r~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  227 RDKLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDT  263 (933)
T ss_pred             cccccccceEEEEEcCCCcE-EeeeccCCcEEEEeccc
Confidence            55556666999999999997 89999999999999986

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=7e-26  Score=181.63  Aligned_cols=267  Identities=17%  Similarity=0.240  Sum_probs=202.8

Q ss_pred             CCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccE
Q 018293           46 PAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV  125 (358)
Q Consensus        46 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  125 (358)
                      +..+++++|.|+     .+-+++|+|..-|.|-+||+.+.+....                       -...+..|..+|
T Consensus       186 ~~Rit~l~fHPt-----~~~~lva~GdK~G~VG~Wn~~~~~~d~d-----------------------~v~~f~~hs~~V  237 (498)
T KOG4328|consen  186 DRRITSLAFHPT-----ENRKLVAVGDKGGQVGLWNFGTQEKDKD-----------------------GVYLFTPHSGPV  237 (498)
T ss_pred             ccceEEEEeccc-----CcceEEEEccCCCcEEEEecCCCCCccC-----------------------ceEEeccCCccc
Confidence            444567777553     3447899999999999999974333222                       233455799999


Q ss_pred             EEEecCCCCCcEEEEEEcCCeEEEEECCCCce--eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC-cc
Q 018293          126 LGLAWNKEFRNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SG  202 (358)
Q Consensus       126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~  202 (358)
                      .+|.|+|.+...+++.+.||+|++-|++....  +.........+.++.|+.+. ..++.+..=|.+.+||+++... ..
T Consensus       238 s~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~  316 (498)
T KOG4328|consen  238 SGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYE  316 (498)
T ss_pred             cceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccch
Confidence            99999999888999999999999999987743  33333345567788888887 6677777777999999998876 34


Q ss_pred             ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC
Q 018293          203 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD  282 (358)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d  282 (358)
                      ....|...|..++++|-...++++++.|++++|||+|......     .+......|...|.+..|+|.++. |+|.+.|
T Consensus       317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~-----sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D  390 (498)
T KOG4328|consen  317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA-----SPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQD  390 (498)
T ss_pred             hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC-----CcceecccccceeeeeEEcCCCCc-eEeeccC
Confidence            4556777999999999999999999999999999999875432     235566789999999999999955 8999999


Q ss_pred             CcEEEEecC----CCCceeeEecCCCC---ceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293          283 KMVKLWDLS----NNQPSCIASRNPKA---GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       283 g~i~i~d~~----~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                      ..|+|||..    ...+..........   -......|.|+.. ++++|-.-..|-|+|-..++.+.++....
T Consensus       391 ~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q~v~el~~P~  462 (498)
T KOG4328|consen  391 NEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQMVCELHDPE  462 (498)
T ss_pred             CceEEeecccccccCCccceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCEEeeeccCcc
Confidence            999999983    33332332222111   1244578999988 68889888899999998888666655444

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.9e-25  Score=188.68  Aligned_cols=303  Identities=16%  Similarity=0.203  Sum_probs=220.0

Q ss_pred             ccCCCcEEEEEEecCCCceEEEEEEeccCC-CCCceEeece--------------ee---cCCcccceeeecCCccccCC
Q 018293            3 INPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHH--------------II---IPAFPLCMAWLDCPLKDREK   64 (358)
Q Consensus         3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~---~~~~~~~~~~~~~~~~~s~~   64 (358)
                      |.-+.++|++|+.++     .+.+|+..+- ..-.+...|-              ..   ...+|-|+     +..|++.
T Consensus       266 IcVs~r~I~cgCa~g-----~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~I-----A~~Fdet  335 (1080)
T KOG1408|consen  266 ICVSSRLIACGCAKG-----MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAI-----ACQFDET  335 (1080)
T ss_pred             eeeecceEEEeeccc-----eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCcee-----EEEecCC
Confidence            455789999999997     6777765431 0011111110              00   11123344     3357899


Q ss_pred             CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC----------
Q 018293           65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF----------  134 (358)
Q Consensus        65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------  134 (358)
                      .+.|.+.-.|..++|||+.....+                        .....+-.|...|+.+.--|-+          
T Consensus       336 ~~klscVYndhSlYvWDvrD~~kv------------------------gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp  391 (1080)
T KOG1408|consen  336 TDKLSCVYNDHSLYVWDVRDVNKV------------------------GKCSSMLYHSACIWDVENLPCNVHSPTAACLP  391 (1080)
T ss_pred             CceEEEEEcCceEEEEeccccccc------------------------cceeeeeeccceeeeeccccccccCcccccCC
Confidence            999999999999999999754332                        2233344588888888765521          


Q ss_pred             CcEEEEEEcCCeEEEEECCCCceeeee-------------------------------------cccccceeeEEEcCCC
Q 018293          135 RNILASASADKQVKIWDVAAGKCNLTL-------------------------------------EHHTDKVQAVAWNHHS  177 (358)
Q Consensus       135 ~~~l~s~~~dg~v~iwd~~~~~~~~~~-------------------------------------~~~~~~v~~~~~~~~~  177 (358)
                      ...+++++.|++|++||++.+..-..+                                     -.....+.+++.+|++
T Consensus       392 ~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g  471 (1080)
T KOG1408|consen  392 RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG  471 (1080)
T ss_pred             ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc
Confidence            235899999999999999752110000                                     0123468999999999


Q ss_pred             CcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC--CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEE
Q 018293          178 PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT  255 (358)
Q Consensus       178 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  255 (358)
                       ++|++|..-|.+++||+...+.......|+..|.|+.++..  +..++++++.|.-|.+||.....        .++..
T Consensus       472 -qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny--------~l~qt  542 (1080)
T KOG1408|consen  472 -QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY--------DLVQT  542 (1080)
T ss_pred             -ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc--------chhhh
Confidence             99999999999999999998888888899999999999752  34688999999999999997652        33334


Q ss_pred             EeecCCc-------------------------------------------------eeEEEecCCCCcEEEEEeCCCcEE
Q 018293          256 LHAHDKA-------------------------------------------------VCTISYNPLVPNLLATGSTDKMVK  286 (358)
Q Consensus       256 ~~~~~~~-------------------------------------------------i~~i~~~~~~~~~l~~~~~dg~i~  286 (358)
                      +.+|...                                                 +..++..|.. .++++++.|..|+
T Consensus       543 ld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~-k~v~t~cQDrnir  621 (1080)
T KOG1408|consen  543 LDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS-KLVVTVCQDRNIR  621 (1080)
T ss_pred             hcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCc-ceEEEEecccceE
Confidence            4444444                                                 4445555555 6899999999999


Q ss_pred             EEecCCCCceeeEe-cCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcC
Q 018293          287 LWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  350 (358)
Q Consensus       287 i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  350 (358)
                      |||+++++....+. -..|.+....+...|.|-| +|+.+.|.++.++|..+|+++.+.++|.+.
T Consensus       622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~Df~sgEcvA~m~GHsE~  685 (1080)
T KOG1408|consen  622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFVDFVSGECVAQMTGHSEA  685 (1080)
T ss_pred             EEeccccceeeeecccccCCCceEEEEECCCccE-EEEeecCCceEEEEeccchhhhhhcCcchh
Confidence            99999998433322 2346788889999999997 889999999999999999999999998764

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=4.7e-26  Score=191.37  Aligned_cols=225  Identities=17%  Similarity=0.237  Sum_probs=190.9

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEE-EecCCCCCcEEEEEE
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS  142 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~  142 (358)
                      ++..+++++.||++++|+-...+                         ....+.+.+|.+-|.+ +++.+..+..+++|+
T Consensus        24 ~~~~i~s~sRd~t~~vw~~~~~~-------------------------~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~   78 (745)
T KOG0301|consen   24 DGVCIISGSRDGTVKVWAKKGKQ-------------------------YLETHAFEGPKGFIANSICYAESDKGRLVVGG   78 (745)
T ss_pred             CCeEEeecCCCCceeeeeccCcc-------------------------cccceecccCcceeeccceeccccCcceEeec
Confidence            45579999999999999965322                         2233455678888877 888764355799999


Q ss_pred             cCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCC
Q 018293          143 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  222 (358)
Q Consensus       143 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  222 (358)
                      .|+++.+|...+..++..+.+|...|.++....++ . +++|+.|.++++|-...  ......+|...|++++.-|.+  
T Consensus        79 ~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~--  152 (745)
T KOG0301|consen   79 MDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN--  152 (745)
T ss_pred             ccceEEEEecCCCCchhhhhccccceeeeecCCcC-c-eEecccccceEEecchh--hhcccCCcchheeeeeecCCC--
Confidence            99999999999999999999999999999988777 4 89999999999997653  333367899999999999843  


Q ss_pred             eEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC
Q 018293          223 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  302 (358)
Q Consensus       223 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  302 (358)
                      .+++|+.|.+|++|.-.           ..+..+.+|...|+.+++-+++  .+++++.||.|+.|++ +++  ++.+..
T Consensus       153 ~~vTgsaDKtIklWk~~-----------~~l~tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~-~ge--~l~~~~  216 (745)
T KOG0301|consen  153 TYVTGSADKTIKLWKGG-----------TLLKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDL-DGE--VLLEMH  216 (745)
T ss_pred             cEEeccCcceeeeccCC-----------chhhhhccchhheeeeEEecCC--CeEeecCCceEEEEec-cCc--eeeeee
Confidence            89999999999999874           6688899999999999999964  6889999999999999 455  688899


Q ss_pred             CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          303 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       303 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      +|+..|.++....+++ +++++++|+++++|+..
T Consensus       217 ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  217 GHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             ccceEEEEEEecCCCC-eEEEecCCceEEEeecC
Confidence            9999999999777777 69999999999999976

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=6.2e-28  Score=203.51  Aligned_cols=210  Identities=23%  Similarity=0.349  Sum_probs=189.5

Q ss_pred             cCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc
Q 018293          118 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  197 (358)
Q Consensus       118 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  197 (358)
                      +..|...|.++..-.. ...+++|+.|..+-+|.+.....+..+.+|..+|.++.|++.. .++++|+.+|+|++||++.
T Consensus        24 ~~~hsaav~~lk~~~s-~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDlee  101 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKS-SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEE  101 (825)
T ss_pred             hhhhhhhhceeeeecc-ceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhh
Confidence            3468889999988555 6789999999999999998877788899999999999999998 8999999999999999999


Q ss_pred             CCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEE
Q 018293          198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA  277 (358)
Q Consensus       198 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~  277 (358)
                      .+....+.+|...+.++.|+|.+. +++.|+.|+.+++||.+..         .+.+.+.+|...+..++|+|+| .+++
T Consensus       102 Ak~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~---------Gc~~~~~s~~~vv~~l~lsP~G-r~v~  170 (825)
T KOG0267|consen  102 AKIVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKK---------GCSHTYKSHTRVVDVLRLSPDG-RWVA  170 (825)
T ss_pred             hhhhhhhhccccCcceeeeccceE-Eeccccccccceehhhhcc---------CceeeecCCcceeEEEeecCCC-ceee
Confidence            988888899999999999999655 7799999999999999976         7888999999999999999998 9999


Q ss_pred             EEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          278 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       278 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      .|++|..++|||...++  ...++..|.+.+.++.|+|..- ++++|+.|+++++||+++-+.+..
T Consensus       171 ~g~ed~tvki~d~~agk--~~~ef~~~e~~v~sle~hp~e~-Lla~Gs~d~tv~f~dletfe~I~s  233 (825)
T KOG0267|consen  171 SGGEDNTVKIWDLTAGK--LSKEFKSHEGKVQSLEFHPLEV-LLAPGSSDRTVRFWDLETFEVISS  233 (825)
T ss_pred             ccCCcceeeeecccccc--cccccccccccccccccCchhh-hhccCCCCceeeeeccceeEEeec
Confidence            99999999999999988  5778889999999999999876 899999999999999997665543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=2.1e-25  Score=191.16  Aligned_cols=307  Identities=16%  Similarity=0.257  Sum_probs=229.2

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      .|-|..++++++..+   ..+++|++|..++. |.+. ........+|.|+++..      .+|.++.+++.|++++.++
T Consensus       295 ~fl~~epVl~ta~~D---nSlk~~vfD~~dg~-pR~L-R~R~GHs~Pp~~irfy~------~~g~~ilsa~~Drt~r~fs  363 (910)
T KOG1539|consen  295 TFLPGEPVLVTAGAD---NSLKVWVFDSGDGV-PRLL-RSRGGHSAPPSCIRFYG------SQGHFILSAKQDRTLRSFS  363 (910)
T ss_pred             eecCCCceEeeccCC---CceeEEEeeCCCCc-chhe-eeccCCCCCchheeeec------cCcEEEEecccCcchhhhh
Confidence            467888888888665   68899999977653 3322 22234577888998863      5899999999999999998


Q ss_pred             cccccCcCceee-------------------------cCCcccccccc----------------cc--cCCceecc-ccc
Q 018293           82 LDVIDEVQPHVI-------------------------LGGIDEEKKKK----------------KS--KKGKKSSI-KYK  117 (358)
Q Consensus        82 ~~~~~~~~~~~~-------------------------~~~~~~~~~~~----------------~~--~~~~~~~~-~~~  117 (358)
                      +......+....                         +.-.....+-|                ..  ....+..+ ...
T Consensus       364 ~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~  443 (910)
T KOG1539|consen  364 VISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKR  443 (910)
T ss_pred             hhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcc
Confidence            753221111100                         00000000000                00  00000000 011


Q ss_pred             cCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee---cccccceeeEEEcCCCCcEEEEEeCCCcEEEEE
Q 018293          118 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  194 (358)
Q Consensus       118 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  194 (358)
                      ++.-...+++++.++. +++.+.|+..|+|-+|++++|-....+   ..|..+|++++...-+ +.+++++.+|.+.+||
T Consensus       444 ~~~~~~~~~av~vs~C-GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~  521 (910)
T KOG1539|consen  444 FKKDDINATAVCVSFC-GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWD  521 (910)
T ss_pred             ccccCcceEEEEEecc-CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEe
Confidence            1123367899999999 679999999999999999999888777   5899999999998887 8999999999999999


Q ss_pred             cccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc
Q 018293          195 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  274 (358)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  274 (358)
                      ........ .......+.++..+.. ..+++++..|-.|+++|..+.         +.++.+.+|...|++++|+||| +
T Consensus       522 f~~k~l~~-~l~l~~~~~~iv~hr~-s~l~a~~~ddf~I~vvD~~t~---------kvvR~f~gh~nritd~~FS~Dg-r  589 (910)
T KOG1539|consen  522 FKKKVLKK-SLRLGSSITGIVYHRV-SDLLAIALDDFSIRVVDVVTR---------KVVREFWGHGNRITDMTFSPDG-R  589 (910)
T ss_pred             cCCcceee-eeccCCCcceeeeeeh-hhhhhhhcCceeEEEEEchhh---------hhhHHhhccccceeeeEeCCCC-c
Confidence            98877444 5567778888888874 448888999999999999987         7888999999999999999999 9


Q ss_pred             EEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC-CeEEEEEccC
Q 018293          275 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-GKLEIWDTLS  337 (358)
Q Consensus       275 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~vw~~~~  337 (358)
                      +|++++.|++|++||+.++..+-...   -..+..++.|+|+|.+ ||+...| ..|++|.-.+
T Consensus       590 WlisasmD~tIr~wDlpt~~lID~~~---vd~~~~sls~SPngD~-LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  590 WLISASMDSTIRTWDLPTGTLIDGLL---VDSPCTSLSFSPNGDF-LATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             EEEEeecCCcEEEEeccCcceeeeEe---cCCcceeeEECCCCCE-EEEEEecCceEEEEEchh
Confidence            99999999999999999998433332   3578999999999995 8888877 6799997543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=7e-25  Score=189.94  Aligned_cols=268  Identities=16%  Similarity=0.237  Sum_probs=203.5

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCC-CCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI   79 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v   79 (358)
                      |.+-|+|..|.++.+++     .+.+|+...+ .+|.....+    ...+.++         ..++.+|++|+.+++|.+
T Consensus        19 i~~d~~gefi~tcgsdg-----~ir~~~~~sd~e~P~ti~~~----g~~v~~i---------a~~s~~f~~~s~~~tv~~   80 (933)
T KOG1274|consen   19 ICYDPDGEFICTCGSDG-----DIRKWKTNSDEEEPETIDIS----GELVSSI---------ACYSNHFLTGSEQNTVLR   80 (933)
T ss_pred             EEEcCCCCEEEEecCCC-----ceEEeecCCcccCCchhhcc----CceeEEE---------eecccceEEeeccceEEE
Confidence            35789999888888887     6666766554 334333311    1122233         336679999999999999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  159 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  159 (358)
                      |.+..++...-                           +...+-++.+++|+.+ ++++|.|+.|-.|++-++.+.....
T Consensus        81 y~fps~~~~~i---------------------------L~Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D~s~~~  132 (933)
T KOG1274|consen   81 YKFPSGEEDTI---------------------------LARFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDDSSQEK  132 (933)
T ss_pred             eeCCCCCccce---------------------------eeeeeccceEEEEecC-CcEEEeecCceeEEEEeccccchhe
Confidence            99987654431                           2235678999999998 7799999999999999999999999


Q ss_pred             eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee--------ecCCeeeEEEcCCCCCeEEEEecCC
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--------VAADVESLAWDPHAEHSFVVSLEDG  231 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~dg  231 (358)
                      .+++|..+|.++.|+|.+ .+|++.+-||.|++||+.++........        ....+..++|+|+++ .+++.+.|+
T Consensus       133 ~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~  210 (933)
T KOG1274|consen  133 VLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDN  210 (933)
T ss_pred             eecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC-eEEeeccCC
Confidence            999999999999999999 9999999999999999998765443221        234577899999766 566677899


Q ss_pred             eEEEEEcccCCCCCCCCCCCccEEEe--ecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeE
Q 018293          232 TIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF  309 (358)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~  309 (358)
                      .|++|+....         ...+.+.  .+...+..+.|+|+| .|||+++.||.|.|||..+-.   .   ......|.
T Consensus       211 ~Vkvy~r~~w---------e~~f~Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~---~---~~~~~~Vc  274 (933)
T KOG1274|consen  211 TVKVYSRKGW---------ELQFKLRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHE---R---HEFKRAVC  274 (933)
T ss_pred             eEEEEccCCc---------eeheeecccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccch---h---ccccceeE
Confidence            9999999987         4444443  344559999999998 999999999999999998733   1   23346799


Q ss_pred             EEEEcCCCCeEEEEEccCCeEEEE
Q 018293          310 SVAFSEDSPFVLAIGGSKGKLEIW  333 (358)
Q Consensus       310 ~~~~~~~~~~~l~~~~~dg~i~vw  333 (358)
                      +++|.|+..- +-.-...|...+|
T Consensus       275 ~~aw~p~~n~-it~~~~~g~~~~~  297 (933)
T KOG1274|consen  275 CEAWKPNANA-ITLITALGTLGVS  297 (933)
T ss_pred             EEecCCCCCe-eEEEeeccccccC
Confidence            9999998873 4333444444433

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=7.2e-25  Score=187.94  Aligned_cols=285  Identities=14%  Similarity=0.199  Sum_probs=214.1

Q ss_pred             CcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEccccc
Q 018293            7 DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVID   86 (358)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~   86 (358)
                      -|.++.|...+     .+.+|+...++....+.++...    +.+++-       +|-=+.+|.|..+|+|.++++...+
T Consensus       172 LNKIvvGs~~G-----~lql~Nvrt~K~v~~f~~~~s~----IT~ieq-------sPaLDVVaiG~~~G~ViifNlK~dk  235 (910)
T KOG1539|consen  172 LNKIVVGSSQG-----RLQLWNVRTGKVVYTFQEFFSR----ITAIEQ-------SPALDVVAIGLENGTVIIFNLKFDK  235 (910)
T ss_pred             eeeEEEeecCC-----cEEEEEeccCcEEEEecccccc----eeEecc-------CCcceEEEEeccCceEEEEEcccCc
Confidence            46788887776     7778887776544444444322    234433       5667899999999999999997654


Q ss_pred             CcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeec-ccc
Q 018293           87 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHT  165 (358)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~  165 (358)
                      .+.                           .++.-.+.|+.++|.-||...+++|+..|.+.+||++..+.+..++ .|.
T Consensus       236 il~---------------------------sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~  288 (910)
T KOG1539|consen  236 ILM---------------------------SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHY  288 (910)
T ss_pred             EEE---------------------------EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecccc
Confidence            443                           2322248999999999998899999999999999999888777665 788


Q ss_pred             cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC----ccceeeec---------------------------------
Q 018293          166 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH----SGFKWAVA---------------------------------  208 (358)
Q Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~---------------------------------  208 (358)
                      +.+....|.|.. ..+++++.|+.+++|=..++..    .+...+|.                                 
T Consensus       289 ~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e  367 (910)
T KOG1539|consen  289 GSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISE  367 (910)
T ss_pred             CCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHH
Confidence            899999999988 8999999999888874331110    00000011                                 


Q ss_pred             --------------------------------------------------------------------------------
Q 018293          209 --------------------------------------------------------------------------------  208 (358)
Q Consensus       209 --------------------------------------------------------------------------------  208 (358)
                                                                                                      
T Consensus       368 ~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~  447 (910)
T KOG1539|consen  368 SQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKD  447 (910)
T ss_pred             HHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcccccc
Confidence                                                                                            


Q ss_pred             -CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE---eecCCceeEEEecCCCCcEEEEEeCCCc
Q 018293          209 -ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL---HAHDKAVCTISYNPLVPNLLATGSTDKM  284 (358)
Q Consensus       209 -~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~dg~  284 (358)
                       ..+++++.++ .+++.+.|...|.|-+|++.++         ....++   ..|.++|++++...-+ +.+++++.+|.
T Consensus       448 ~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSG---------i~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gi  516 (910)
T KOG1539|consen  448 DINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSG---------IHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGI  516 (910)
T ss_pred             CcceEEEEEec-cCceEEEeccCCeEEEEEcccC---------eeecccccCccccCceeEEEecCCC-ceEEEccCcce
Confidence             1244555555 3567788888888888888877         334444   5899999999999877 88999999999


Q ss_pred             EEEEecCCCCce---------------------------------------eeEecCCCCceeEEEEEcCCCCeEEEEEc
Q 018293          285 VKLWDLSNNQPS---------------------------------------CIASRNPKAGAVFSVAFSEDSPFVLAIGG  325 (358)
Q Consensus       285 i~i~d~~~~~~~---------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  325 (358)
                      +.+||..+..+.                                       .+..+.+|.+.|++++|||||++ |++++
T Consensus       517 lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW-lisas  595 (910)
T KOG1539|consen  517 LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW-LISAS  595 (910)
T ss_pred             EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE-EEEee
Confidence            999998764311                                       23456789999999999999996 88999


Q ss_pred             cCCeEEEEEccCCCcccccccc
Q 018293          326 SKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       326 ~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                      .|++|++||+.++.++......
T Consensus       596 mD~tIr~wDlpt~~lID~~~vd  617 (910)
T KOG1539|consen  596 MDSTIRTWDLPTGTLIDGLLVD  617 (910)
T ss_pred             cCCcEEEEeccCcceeeeEecC
Confidence            9999999999999988755443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.94  E-value=3.1e-25  Score=170.88  Aligned_cols=278  Identities=19%  Similarity=0.274  Sum_probs=195.2

Q ss_pred             EEEEEeccCCCCCce-EeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCccccc
Q 018293           23 EVYILEESDGGDPNL-YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEK  101 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  101 (358)
                      .+.+|+...+....+ ...-+...+..-..++|.-   .-.....+||+|+.-|.|+|.|+.+++..             
T Consensus        65 rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~y---d~~~~~p~la~~G~~GvIrVid~~~~~~~-------------  128 (385)
T KOG1034|consen   65 RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSY---DSNTGNPFLAAGGYLGVIRVIDVVSGQCS-------------  128 (385)
T ss_pred             EEEEEEECCccceeeeeeccCCCCCcceEEEEEEe---cCCCCCeeEEeecceeEEEEEecchhhhc-------------
Confidence            566666554332222 2222222333344566632   11223568999999999999999764443             


Q ss_pred             ccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee---cccccceeeEEEcCCCC
Q 018293          102 KKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSP  178 (358)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~  178 (358)
                                    ..+.+|..+|+.|.+.|+..+++++++.|.+|++|++++..++..+   .+|.+.|.++.|++++ 
T Consensus       129 --------------~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g-  193 (385)
T KOG1034|consen  129 --------------KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG-  193 (385)
T ss_pred             --------------cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC-
Confidence                          3566899999999999998899999999999999999999998887   5799999999999999 


Q ss_pred             cEEEEEeCCCcEEEEEcccCCCcc----------------------------ceeeecCCeeeEEEcCCCCCeEEEEecC
Q 018293          179 QILLSGSFDRSVVMKDARISTHSG----------------------------FKWAVAADVESLAWDPHAEHSFVVSLED  230 (358)
Q Consensus       179 ~~l~~~~~dg~i~i~d~~~~~~~~----------------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~d  230 (358)
                      .++++++.|.++++|++...+...                            ....|...|.|+.|--   +++++-+-+
T Consensus       194 d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSksce  270 (385)
T KOG1034|consen  194 DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCE  270 (385)
T ss_pred             CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh---hheeecccC
Confidence            799999999999999997332100                            0112455677777753   478888888


Q ss_pred             CeEEEEEcccCCCC-----CCCCCCCccEEEeecCCceeEE--EecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC-
Q 018293          231 GTIKGFDIRTAKSD-----PDSTSQQSSFTLHAHDKAVCTI--SYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-  302 (358)
Q Consensus       231 g~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~i--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-  302 (358)
                      +.|..|........     +..........+.-....|.-+  +|.|-+ .+|+.|...|.|.+||++..++....++. 
T Consensus       271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~  349 (385)
T KOG1034|consen  271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTH  349 (385)
T ss_pred             ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEe
Confidence            89999988432211     1001112222333333444444  455666 79999999999999999988763332222 


Q ss_pred             -CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          303 -PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       303 -~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                       .....|...+|+.|+. +|+..+.|++|.-||..
T Consensus       350 s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  350 SKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ccccceeeeeeecccCc-EEEEEeCCCcEEEEEee
Confidence             2356799999999999 57778899999999864

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.94  E-value=1.5e-24  Score=164.57  Aligned_cols=290  Identities=21%  Similarity=0.323  Sum_probs=206.8

Q ss_pred             CcEEEEEEecCC-CceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccc
Q 018293            7 DAVIVCARNEDD-VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI   85 (358)
Q Consensus         7 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~   85 (358)
                      +-.|++|+-.++ ...+++.-++...+   .+....+..++.++..+-|+|-+..-.|  ++|||.+  -.+|+|.+...
T Consensus        59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~---e~~~~a~fd~~YP~tK~~wiPd~~g~~p--dlLATs~--D~LRlWri~~e  131 (364)
T KOG0290|consen   59 KFRLAVGSFIEEYNNKVQIVQLDEDSG---ELVEDANFDHPYPVTKLMWIPDSKGVYP--DLLATSS--DFLRLWRIGDE  131 (364)
T ss_pred             ceeEEEeeeccccCCeeEEEEEccCCC---ceeccCCCCCCCCccceEecCCccccCc--chhhccc--CeEEEEeccCc
Confidence            345555544332 23444444443332   3333333456777889999874332223  5777775  57999999742


Q ss_pred             cC-cCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc---eeeee
Q 018293           86 DE-VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK---CNLTL  161 (358)
Q Consensus        86 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~  161 (358)
                      +. ......+..                   ..-..+..++++..|+.-..+++.+++-|-+..|||++++.   ....+
T Consensus       132 e~~~~~~~~L~~-------------------~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL  192 (364)
T KOG0290|consen  132 ESRVELQSVLNN-------------------NKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL  192 (364)
T ss_pred             CCceehhhhhcc-------------------CcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence            21 111111110                   01124677999999998878899999999999999999873   35566


Q ss_pred             cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee---cCCeeeEEEcCCCCCeEEEEecC-CeEEEEE
Q 018293          162 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFVVSLED-GTIKGFD  237 (358)
Q Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~d-g~i~i~d  237 (358)
                      -.|..+|..++|...+.+.|++.+.||.++++|++..+........   ..+...++|++.+.+++++-..| ..|.+.|
T Consensus       193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD  272 (364)
T KOG0290|consen  193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD  272 (364)
T ss_pred             EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence            7899999999999988889999999999999999987765544432   45688899999999999986554 5799999


Q ss_pred             cccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc----eeeEecCCCCceeEEEEE
Q 018293          238 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----SCIASRNPKAGAVFSVAF  313 (358)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~v~~~~~  313 (358)
                      +|..        ..++..+.+|.+.|+.++|.|.....|++++.|..+.+||+.....    ..+.... ..+.|+.+.|
T Consensus       273 iR~P--------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~W  343 (364)
T KOG0290|consen  273 IRVP--------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQW  343 (364)
T ss_pred             ecCC--------CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeee
Confidence            9987        4788999999999999999998889999999999999999976321    1122222 3567999999


Q ss_pred             cCCCCeEEEEEccCCeEEE
Q 018293          314 SEDSPFVLAIGGSKGKLEI  332 (358)
Q Consensus       314 ~~~~~~~l~~~~~dg~i~v  332 (358)
                      ++...--++.+. ++.+.+
T Consensus       344 s~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  344 SSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             cccCCCEEEEEe-cCeeeE
Confidence            975443466554 445544

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.9e-25  Score=176.55  Aligned_cols=285  Identities=16%  Similarity=0.246  Sum_probs=210.3

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCc-eEEecCCCCeEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVGSMEPAIEI   79 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~v   79 (358)
                      ++|+|..+++++|.-++     .+.+|.......+.+...|   ....|+.      ...|+|+|. .+++++....++.
T Consensus       219 v~FHp~~plllvaG~d~-----~lrifqvDGk~N~~lqS~~---l~~fPi~------~a~f~p~G~~~i~~s~rrky~ys  284 (514)
T KOG2055|consen  219 VQFHPTAPLLLVAGLDG-----TLRIFQVDGKVNPKLQSIH---LEKFPIQ------KAEFAPNGHSVIFTSGRRKYLYS  284 (514)
T ss_pred             EEecCCCceEEEecCCC-----cEEEEEecCccChhheeee---eccCccc------eeeecCCCceEEEecccceEEEE
Confidence            57999999999998876     5556655443223222222   2223322      224588998 8999999999999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCC-cccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN  158 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  158 (358)
                      ||+.+.+...-                         ....++ ...+.....+++ +++|+..+..|.|.+....+++.+
T Consensus       285 yDle~ak~~k~-------------------------~~~~g~e~~~~e~FeVShd-~~fia~~G~~G~I~lLhakT~eli  338 (514)
T KOG2055|consen  285 YDLETAKVTKL-------------------------KPPYGVEEKSMERFEVSHD-SNFIAIAGNNGHIHLLHAKTKELI  338 (514)
T ss_pred             eeccccccccc-------------------------cCCCCcccchhheeEecCC-CCeEEEcccCceEEeehhhhhhhh
Confidence            99976443321                         122233 345677788999 679999999999999999999999


Q ss_pred             eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCe--eeEEEcCCCCCeEEEEecCCeEEEE
Q 018293          159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADV--ESLAWDPHAEHSFVVSLEDGTIKGF  236 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~dg~i~i~  236 (358)
                      ..++ -.+.|..++|+.++ ..|++++.+|.|.+||++...... .+...+.+  ++++.+++ +.++++|+..|.|.||
T Consensus       339 ~s~K-ieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~~~~-rf~D~G~v~gts~~~S~n-g~ylA~GS~~GiVNIY  414 (514)
T KOG2055|consen  339 TSFK-IEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNSCLH-RFVDDGSVHGTSLCISLN-GSYLATGSDSGIVNIY  414 (514)
T ss_pred             heee-eccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcceEE-EEeecCccceeeeeecCC-CceEEeccCcceEEEe
Confidence            9888 56789999999999 888888889999999999986555 44444444  45666674 4599999999999999


Q ss_pred             EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC--CCcEEEEecCCCCceeeEecC---CCCceeEEE
Q 018293          237 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIASRN---PKAGAVFSV  311 (358)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~---~~~~~v~~~  311 (358)
                      |..+....   ...+++..+..-...|+++.|+|+. .+|+.++.  +..+++-.+.+...  ...++   ..-+.|+||
T Consensus       415 d~~s~~~s---~~PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TV--FsNfP~~n~~vg~vtc~  488 (514)
T KOG2055|consen  415 DGNSCFAS---TNPKPIKTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTV--FSNFPTSNTKVGHVTCM  488 (514)
T ss_pred             ccchhhcc---CCCCchhhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccceee--eccCCCCCCcccceEEE
Confidence            97654221   1136677777777889999999998 78887765  56689888876541  11222   223569999


Q ss_pred             EEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          312 AFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       312 ~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      +|+|.+.| ||.|..+|.+.+|.+.
T Consensus       489 aFSP~sG~-lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  489 AFSPNSGY-LAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EecCCCce-EEeecCCCceeeEeec
Confidence            99999995 9999999999999874

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.94  E-value=7.4e-25  Score=182.65  Aligned_cols=248  Identities=15%  Similarity=0.187  Sum_probs=179.3

Q ss_pred             ccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEE
Q 018293           49 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  128 (358)
Q Consensus        49 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  128 (358)
                      ++.++|+       |....|++++.|.++++||+.+.......                         .+.||...|.++
T Consensus       103 ifDl~wa-------pge~~lVsasGDsT~r~Wdvk~s~l~G~~-------------------------~~~GH~~SvkS~  150 (720)
T KOG0321|consen  103 IFDLKWA-------PGESLLVSASGDSTIRPWDVKTSRLVGGR-------------------------LNLGHTGSVKSE  150 (720)
T ss_pred             eEeeccC-------CCceeEEEccCCceeeeeeeccceeecce-------------------------eecccccccchh
Confidence            3477774       55678999999999999999865544321                         355899999999


Q ss_pred             ecCCCCCcEEEEEEcCCeEEEEECCCCc--------------------e-------eeeecccccceee---EEEcCCCC
Q 018293          129 AWNKEFRNILASASADKQVKIWDVAAGK--------------------C-------NLTLEHHTDKVQA---VAWNHHSP  178 (358)
Q Consensus       129 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~--------------------~-------~~~~~~~~~~v~~---~~~~~~~~  178 (358)
                      +|.|.+...|++|+.||.|.|||++...                    +       +.....+...|.+   +.+..|. 
T Consensus       151 cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-  229 (720)
T KOG0321|consen  151 CFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-  229 (720)
T ss_pred             hhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-
Confidence            9999988999999999999999986321                    0       0111223344444   4445565 


Q ss_pred             cEEEEEeC-CCcEEEEEcccCCCcccee--------ee---cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC
Q 018293          179 QILLSGSF-DRSVVMKDARISTHSGFKW--------AV---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD  246 (358)
Q Consensus       179 ~~l~~~~~-dg~i~i~d~~~~~~~~~~~--------~~---~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~  246 (358)
                      ..|++++. |+.|++||++.........        .+   .-.+.++..+..|. ++++.+.|+.|++|++.....   
T Consensus       230 ~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt-~L~AsCtD~sIy~ynm~s~s~---  305 (720)
T KOG0321|consen  230 STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT-YLFASCTDNSIYFYNMRSLSI---  305 (720)
T ss_pred             ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC-eEEEEecCCcEEEEeccccCc---
Confidence            67888877 9999999999765432111        11   23467777777555 555555699999999998754   


Q ss_pred             CCCCCccEEEeecCCc--eeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEE
Q 018293          247 STSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG  324 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  324 (358)
                          .++..+.++...  -..-..+|++ .++++|+.|...++|.+.+.+. ....+.+|...|++++|.|..-.-++++
T Consensus       306 ----sP~~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~-~~~~l~Ght~eVt~V~w~pS~~t~v~Tc  379 (720)
T KOG0321|consen  306 ----SPVAEFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEA-PPALLLGHTREVTTVRWLPSATTPVATC  379 (720)
T ss_pred             ----CchhhccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCccC-ChhhhhCcceEEEEEeeccccCCCceee
Confidence                444444444221  1223567888 8999999999999999988764 4556778999999999988543347778


Q ss_pred             ccCCeEEEEEccCCC
Q 018293          325 GSKGKLEIWDTLSDA  339 (358)
Q Consensus       325 ~~dg~i~vw~~~~~~  339 (358)
                      +.|..+++|++.++-
T Consensus       380 SdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  380 SDDFRVKIWRLSNGL  394 (720)
T ss_pred             ccCcceEEEeccCch
Confidence            999999999997654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.94  E-value=7.7e-25  Score=177.62  Aligned_cols=215  Identities=19%  Similarity=0.246  Sum_probs=181.2

Q ss_pred             CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293           63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  142 (358)
Q Consensus        63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  142 (358)
                      ....|+++|+..+.|+|||+..                           ......+.+|+..|+++.++.. ..+||+++
T Consensus        89 s~S~y~~sgG~~~~Vkiwdl~~---------------------------kl~hr~lkdh~stvt~v~YN~~-DeyiAsvs  140 (673)
T KOG4378|consen   89 SQSLYEISGGQSGCVKIWDLRA---------------------------KLIHRFLKDHQSTVTYVDYNNT-DEYIASVS  140 (673)
T ss_pred             hcceeeeccCcCceeeehhhHH---------------------------HHHhhhccCCcceeEEEEecCC-cceeEEec
Confidence            3458999999999999999963                           3344467789999999999988 67999999


Q ss_pred             cCCeEEEEECCCCceeeeeccc-ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-ceeeecCCeeeEEEcCCC
Q 018293          143 ADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHA  220 (358)
Q Consensus       143 ~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~  220 (358)
                      ..|.|.|..+.++.....|... ...|.-+.|+|....+|.+++.+|.|.+||+....+.. ....|..+...++|+|.+
T Consensus       141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn  220 (673)
T KOG4378|consen  141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN  220 (673)
T ss_pred             cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc
Confidence            9999999999998877777643 45677999999987888999999999999998776654 334688999999999999


Q ss_pred             CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe
Q 018293          221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  300 (358)
Q Consensus       221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  300 (358)
                      +.++++.+.|..|.+||.+..         .....+ ....+...++|+++| .+|++|...|.|..||++..+. ++..
T Consensus       221 e~l~vsVG~Dkki~~yD~~s~---------~s~~~l-~y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k~-Pv~v  288 (673)
T KOG4378|consen  221 EALLVSVGYDKKINIYDIRSQ---------ASTDRL-TYSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTKA-PVAV  288 (673)
T ss_pred             cceEEEecccceEEEeecccc---------ccccee-eecCCcceeeecCCc-eEEEeecCCceEEEEecccCCC-CceE
Confidence            999999999999999999975         222232 345678999999999 9999999999999999998653 6777


Q ss_pred             cCCCCceeEEEEEcCCC
Q 018293          301 RNPKAGAVFSVAFSEDS  317 (358)
Q Consensus       301 ~~~~~~~v~~~~~~~~~  317 (358)
                      ...|...|++++|-|.-
T Consensus       289 ~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  289 RSAHDASVTRVAFQPSP  305 (673)
T ss_pred             eeecccceeEEEeeecc
Confidence            88899999999998764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.7e-24  Score=165.94  Aligned_cols=231  Identities=14%  Similarity=0.236  Sum_probs=177.7

Q ss_pred             CCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEccc
Q 018293            5 PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDV   84 (358)
Q Consensus         5 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~   84 (358)
                      -+++.++.|++++     .+.+||.....+.....+|..    .+.++.+.++     ...+.|++|+.||.|.+|+...
T Consensus        51 Vs~~~~aSGssDe-----tI~IYDm~k~~qlg~ll~Hag----sitaL~F~~~-----~S~shLlS~sdDG~i~iw~~~~  116 (362)
T KOG0294|consen   51 VSGPYVASGSSDE-----TIHIYDMRKRKQLGILLSHAG----SITALKFYPP-----LSKSHLLSGSDDGHIIIWRVGS  116 (362)
T ss_pred             ecceeEeccCCCC-----cEEEEeccchhhhcceecccc----ceEEEEecCC-----cchhheeeecCCCcEEEEEcCC
Confidence            3688999998887     899999887666666666633    3345555321     1123899999999999999964


Q ss_pred             ccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeeccc
Q 018293           85 IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH  164 (358)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  164 (358)
                                                 +.....+.+|.+.|+.++.+|. +++.++.+.|+.+++||+-+|+.-..+. .
T Consensus       117 ---------------------------W~~~~slK~H~~~Vt~lsiHPS-~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L  167 (362)
T KOG0294|consen  117 ---------------------------WELLKSLKAHKGQVTDLSIHPS-GKLALSVGGDQVLRTWNLVRGRVAFVLN-L  167 (362)
T ss_pred             ---------------------------eEEeeeecccccccceeEecCC-CceEEEEcCCceeeeehhhcCccceeec-c
Confidence                                       4555577899999999999999 6788899999999999999887655554 2


Q ss_pred             ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCC
Q 018293          165 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD  244 (358)
Q Consensus       165 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~  244 (358)
                      ....+.+.|+|.| .+++.+.. ..|-+|.+.+..... ....+..+.++.|..  +..+++|.+|+.|.+||....   
T Consensus       168 ~~~at~v~w~~~G-d~F~v~~~-~~i~i~q~d~A~v~~-~i~~~~r~l~~~~l~--~~~L~vG~d~~~i~~~D~ds~---  239 (362)
T KOG0294|consen  168 KNKATLVSWSPQG-DHFVVSGR-NKIDIYQLDNASVFR-EIENPKRILCATFLD--GSELLVGGDNEWISLKDTDSD---  239 (362)
T ss_pred             CCcceeeEEcCCC-CEEEEEec-cEEEEEecccHhHhh-hhhccccceeeeecC--CceEEEecCCceEEEeccCCC---
Confidence            2334559999999 55666554 468889887665443 222335577777765  458999999999999999986   


Q ss_pred             CCCCCCCccEEEeecCCceeEEEec--CCCCcEEEEEeCCCcEEEEecCCC
Q 018293          245 PDSTSQQSSFTLHAHDKAVCTISYN--PLVPNLLATGSTDKMVKLWDLSNN  293 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~i~~i~~~--~~~~~~l~~~~~dg~i~i~d~~~~  293 (358)
                            .+...+.+|...|.++.+.  |++ .+|++++.||.|+|||++..
T Consensus       240 ------~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  240 ------TPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ------ccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEcccc
Confidence                  7888999999999999854  444 79999999999999999876

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.7e-24  Score=173.15  Aligned_cols=247  Identities=19%  Similarity=0.257  Sum_probs=187.3

Q ss_pred             CCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeecee---------------ecCCcccceeeecCCccccCCCceEE
Q 018293            5 PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI---------------IIPAFPLCMAWLDCPLKDREKGNFMA   69 (358)
Q Consensus         5 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~s~~~~~l~   69 (358)
                      ..||++|+|..+.   .|.||.++....-.|.+......               ......+.+.|..      ...+.||
T Consensus       190 ~~gNyvAiGtmdp---~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~------~~~nVLa  260 (463)
T KOG0270|consen  190 GAGNYVAIGTMDP---EIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR------NFRNVLA  260 (463)
T ss_pred             CCcceEEEeccCc---eeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc------ccceeEE
Confidence            3588999997774   56666666665544555443110               1112223455532      1357899


Q ss_pred             ecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEE
Q 018293           70 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  149 (358)
Q Consensus        70 ~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i  149 (358)
                      +|+.|.+|.+||++++++..                           .+..|.+.|.+++|+|.....|++|+.|++|.+
T Consensus       261 SgsaD~TV~lWD~~~g~p~~---------------------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l  313 (463)
T KOG0270|consen  261 SGSADKTVKLWDVDTGKPKS---------------------------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVAL  313 (463)
T ss_pred             ecCCCceEEEEEcCCCCcce---------------------------ehhhcCCceeEEEecCCCceEEEeccccceEEe
Confidence            99999999999998766554                           344699999999999998999999999999999


Q ss_pred             EECCCCce-eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC-CCccceeeecCCeeeEEEcCCCCCeEEEE
Q 018293          150 WDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGFKWAVAADVESLAWDPHAEHSFVVS  227 (358)
Q Consensus       150 wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  227 (358)
                      .|.+.... -..++ ..+.|..++|.|.....++++..||+++-+|+|.. +++.....|..+|.++++++..+++++++
T Consensus       314 ~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~  392 (463)
T KOG0270|consen  314 KDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTA  392 (463)
T ss_pred             eeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeec
Confidence            99984322 22233 45779999999999899999999999999999987 55666778999999999999989999999


Q ss_pred             ecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          228 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       228 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      +.|+.|++|++.....       +.+......-+...|.++.|+-..+++.|+..+.++|||+.+..+
T Consensus       393 s~d~~Vklw~~~~~~~-------~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  393 STDKVVKLWKFDVDSP-------KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             cccceEEEEeecCCCC-------cccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence            9999999999987633       112211111233678888898877899999999999999988764

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=2.5e-24  Score=174.71  Aligned_cols=270  Identities=20%  Similarity=0.268  Sum_probs=200.5

Q ss_pred             EEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEec--CCCCeEEEEEcccccCcCceeecCCcccc
Q 018293           23 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG--SMEPAIEIWDLDVIDEVQPHVILGGIDEE  100 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  100 (358)
                      .+.+||........-|.|++....  ...+.|       +... +|+++  +.|..|++|.-+.....            
T Consensus        13 ~~kl~D~s~~~~~~~~~~~t~~pg--~~s~~w-------~~~n-~lvvas~~gdk~~~~~~K~g~~~~------------   70 (673)
T KOG4378|consen   13 KTKLSDFSDLETKSEYVHQTAEPG--DFSFNW-------QRRN-FLVVASMAGDKVMRIKEKDGKTPE------------   70 (673)
T ss_pred             ceEEeecccccCccccccCCCCCc--ceeeec-------cccc-eEEEeecCCceeEEEecccCCCCc------------
Confidence            666677665544566777764443  445666       4333 35444  56788999986532111            


Q ss_pred             cccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcE
Q 018293          101 KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI  180 (358)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  180 (358)
                                 ......+.+.  .-.|++.... ..++++|+..+.|+|||++...+.+.+++|.+.|+++.++..+ .+
T Consensus        71 -----------Vp~~~k~~gd--~~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D-ey  135 (673)
T KOG4378|consen   71 -----------VPRVRKLTGD--NAFCVACASQ-SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD-EY  135 (673)
T ss_pred             -----------cceeeccccc--hHHHHhhhhc-ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc-ce
Confidence                       1111122222  3344444444 3689999999999999999777778889999999999999887 89


Q ss_pred             EEEEeCCCcEEEEEcccCCCccceeee-cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec
Q 018293          181 LLSGSFDRSVVMKDARISTHSGFKWAV-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH  259 (358)
Q Consensus       181 l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  259 (358)
                      |++++..|.|.+..+.++.....+... ...+.-+.|+|....++.+++.+|.|.+||+....        ....-...|
T Consensus       136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s--------p~~~~~~~H  207 (673)
T KOG4378|consen  136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS--------PIFHASEAH  207 (673)
T ss_pred             eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC--------cccchhhhc
Confidence            999999999999999887765533332 34566899999878788889999999999998762        333445789


Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          260 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       260 ~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      ..+...|+|+|..+.+|++.+.|+.|.+||.+..+......   ...+...++|.++|.+ |+.|...|.|..||++..+
T Consensus       208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~---y~~Plstvaf~~~G~~-L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT---YSHPLSTVAFSECGTY-LCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             cCCcCcceecCCccceEEEecccceEEEeecccccccceee---ecCCcceeeecCCceE-EEeecCCceEEEEecccCC
Confidence            99999999999988999999999999999999766322222   3467899999999995 8889999999999998755


Q ss_pred             cc
Q 018293          340 GI  341 (358)
Q Consensus       340 ~~  341 (358)
                      ..
T Consensus       284 ~P  285 (673)
T KOG4378|consen  284 AP  285 (673)
T ss_pred             CC
Confidence            43

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.9e-25  Score=163.61  Aligned_cols=212  Identities=25%  Similarity=0.332  Sum_probs=174.3

Q ss_pred             CCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC---ceeeeecccccceeeEEEc-CCCCcEEEEEeCCCcEEEEE
Q 018293          119 GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWN-HHSPQILLSGSFDRSVVMKD  194 (358)
Q Consensus       119 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~i~d  194 (358)
                      ..|++.|..+...-- +..||+++.|++|+|+.++..   +++.++.+|.++|..++|. |.-+.+|++++.||.|.+|.
T Consensus         8 t~H~D~IHda~lDyy-gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYY-GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhHhhhhhh-cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            368888988887766 679999999999999999765   4678899999999999995 44448999999999999999


Q ss_pred             cccCCCc--cceeeecCCeeeEEEcCCC-CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC
Q 018293          195 ARISTHS--GFKWAVAADVESLAWDPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  271 (358)
Q Consensus       195 ~~~~~~~--~~~~~~~~~i~~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  271 (358)
                      -..++-.  .....|...+++++|.|++ +..|++++.||.|.+.+.+....      .........|.-.|++++|.|.
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~------w~t~ki~~aH~~GvnsVswapa  160 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG------WTTSKIVFAHEIGVNSVSWAPA  160 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC------ccchhhhhccccccceeeecCc
Confidence            8877432  2344688999999999964 34678899999999999987621      1334456789999999999985


Q ss_pred             ---C----------CcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC---CeEEEEEccCCeEEEEEc
Q 018293          272 ---V----------PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS---PFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       272 ---~----------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~vw~~  335 (358)
                         |          .+.|++|+.|..|+||+..+.+......+.+|...|+.++|.|.-   +..+|+++.||++.||..
T Consensus       161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~  240 (299)
T KOG1332|consen  161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK  240 (299)
T ss_pred             CCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence               2          146999999999999999987665566689999999999999963   445999999999999987


Q ss_pred             cC
Q 018293          336 LS  337 (358)
Q Consensus       336 ~~  337 (358)
                      ..
T Consensus       241 ~~  242 (299)
T KOG1332|consen  241 DE  242 (299)
T ss_pred             cC
Confidence            63

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=3.6e-24  Score=178.58  Aligned_cols=252  Identities=20%  Similarity=0.250  Sum_probs=181.5

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      ...+||.+.+||.|.++|.......                     .+.........|...|..+.|-| +...|++++.
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr---------------------~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasG  120 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFR---------------------LEERQLKKPLAHKNAIFDLKWAP-GESLLVSASG  120 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcc---------------------hhhhhhcccccccceeEeeccCC-CceeEEEccC
Confidence            4568999999999999998642221                     01222234557999999999999 5889999999


Q ss_pred             CCeEEEEECCCCceeee--ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-------------------
Q 018293          144 DKQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-------------------  202 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-------------------  202 (358)
                      |.++++||+++.++...  +.+|...+.+++|.|.++..|++|+.||.|.|||++......                   
T Consensus       121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptps  200 (720)
T KOG0321|consen  121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPS  200 (720)
T ss_pred             CceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCC
Confidence            99999999999988776  889999999999999998999999999999999987433100                   


Q ss_pred             --------ceeeecC----CeeeEEEcCCCCCeEEEEec-CCeEEEEEcccCCCCCCCCCCCccEEEeec---CCceeEE
Q 018293          203 --------FKWAVAA----DVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---DKAVCTI  266 (358)
Q Consensus       203 --------~~~~~~~----~i~~~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~~~i~~i  266 (358)
                              ....+..    .|+.+.| .| +..|++++. |+.|+|||+++......... .....+..|   ...+.++
T Consensus       201 kp~~kr~~k~kA~s~ti~ssvTvv~f-kD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ep-~~~~~~~t~skrs~G~~nL  277 (720)
T KOG0321|consen  201 KPLKKRIRKWKAASNTIFSSVTVVLF-KD-ESTLASAGAADSTIKVWDLRKNYTAYRQEP-RGSDKYPTHSKRSVGQVNL  277 (720)
T ss_pred             chhhccccccccccCceeeeeEEEEE-ec-cceeeeccCCCcceEEEeecccccccccCC-CcccCccCcccceeeeEEE
Confidence                    0001112    2444444 43 446777665 99999999998754221111 112222333   3457788


Q ss_pred             EecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCce--eEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          267 SYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA--VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       267 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      .....| .+|++.+.|+.|+.|++.+.....+..+.++...  -..-..+|++.+ +++|+.|...++|.+.+.+.-.
T Consensus       278 ~lDssG-t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~-l~SgSsd~~ayiw~vs~~e~~~  353 (720)
T KOG0321|consen  278 ILDSSG-TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS-LLSGSSDEQAYIWVVSSPEAPP  353 (720)
T ss_pred             EecCCC-CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce-EeccCCCcceeeeeecCccCCh
Confidence            888877 6666666699999999998765556555554321  222356899996 8899999999999998866543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=5e-23  Score=167.41  Aligned_cols=288  Identities=15%  Similarity=0.229  Sum_probs=201.9

Q ss_pred             cccC-CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCC-ceEEecCCCCeEEE
Q 018293            2 TINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKG-NFMAVGSMEPAIEI   79 (358)
Q Consensus         2 ~~~p-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~v   79 (358)
                      +|++ ++..++++-.++....+.+|.|+.+.. .-....     .....+..+|       +|.+ +++++++ .|.+..
T Consensus       161 aFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~-~~~vk~-----sne~v~~a~F-------HPtd~nliit~G-k~H~~F  226 (626)
T KOG2106|consen  161 AFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK-LGPVKT-----SNEVVFLATF-------HPTDPNLIITCG-KGHLYF  226 (626)
T ss_pred             eecccCCCceEEEecCCCccccchhhchhhhc-cCccee-----ccceEEEEEe-------ccCCCcEEEEeC-CceEEE
Confidence            4555 333344443444446677777776542 111111     1222234444       6665 4555555 789999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  159 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  159 (358)
                      |+...+.......++.+                       ..+.-|.|++|.++|  -+++|..+|.|.||+..+.+..+
T Consensus       227 w~~~~~~l~k~~~~fek-----------------------~ekk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~~~k  281 (626)
T KOG2106|consen  227 WTLRGGSLVKRQGIFEK-----------------------REKKFVLCVTFLENG--DVITGDSGGNILIWSKGTNRISK  281 (626)
T ss_pred             EEccCCceEEEeecccc-----------------------ccceEEEEEEEcCCC--CEEeecCCceEEEEeCCCceEEe
Confidence            99876655443333221                       122679999999994  37899999999999998888777


Q ss_pred             eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC---------------------------------------
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---------------------------------------  200 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------------------------------  200 (358)
                      ....|++.|.+++...+|  .|++|+.|..|..||-.-.+.                                       
T Consensus       282 ~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~  359 (626)
T KOG2106|consen  282 QVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG  359 (626)
T ss_pred             EeeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence            777999999999999998  467799999999998321100                                       


Q ss_pred             -ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE
Q 018293          201 -SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  279 (358)
Q Consensus       201 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~  279 (358)
                       ......|......++.+|+ .+.+++++.|+.+++|+  ..         ++..... -..+..|+.|+|.|  .++.|
T Consensus       360 f~~~v~gh~delwgla~hps-~~q~~T~gqdk~v~lW~--~~---------k~~wt~~-~~d~~~~~~fhpsg--~va~G  424 (626)
T KOG2106|consen  360 FTLTVQGHGDELWGLATHPS-KNQLLTCGQDKHVRLWN--DH---------KLEWTKI-IEDPAECADFHPSG--VVAVG  424 (626)
T ss_pred             ceEEEEecccceeeEEcCCC-hhheeeccCcceEEEcc--CC---------ceeEEEE-ecCceeEeeccCcc--eEEEe
Confidence             0011234456777888994 56899999999999999  22         4444433 35678999999986  89999


Q ss_pred             eCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCc
Q 018293          280 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS  349 (358)
Q Consensus       280 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~  349 (358)
                      +..|...+.|.++...  +..... ..+++.++|+|+|.+ ||.|+.|+.|++|.+..+...........
T Consensus       425 t~~G~w~V~d~e~~~l--v~~~~d-~~~ls~v~ysp~G~~-lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~  490 (626)
T KOG2106|consen  425 TATGRWFVLDTETQDL--VTIHTD-NEQLSVVRYSPDGAF-LAVGSHDNHIYIYRVSANGRKYSRVGKCS  490 (626)
T ss_pred             eccceEEEEeccccee--EEEEec-CCceEEEEEcCCCCE-EEEecCCCeEEEEEECCCCcEEEEeeeec
Confidence            9999999999999663  333333 789999999999995 99999999999999987666555554443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.2e-23  Score=159.34  Aligned_cols=299  Identities=11%  Similarity=0.101  Sum_probs=201.2

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEE-ecCCCCeEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA-VGSMEPAIEI   79 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~dg~i~v   79 (358)
                      |+|+.+|..|++++.++     .+.+|+..+-   ....| .......+..   .|..++|+||-+-++ ..-...++++
T Consensus        92 ~~FsSdGK~lat~~~Dr-----~Ir~w~~~DF---~~~eH-r~~R~nve~d---hpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   92 VAFSSDGKKLATISGDR-----SIRLWDVRDF---ENKEH-RCIRQNVEYD---HPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             eEEcCCCceeEEEeCCc-----eEEEEecchh---hhhhh-hHhhccccCC---CceEEEECCCcceEEEEEccCCEEEE
Confidence            57999999999998887     6667776552   11112 1111111111   233556789966554 4455668999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  159 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  159 (358)
                      |.+...+.-.- ...              ....-.......|.-.|..+-.... +.+|++++.|..|.+|+++ |+.+.
T Consensus       160 yk~~K~~dG~~-~~~--------------~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~  222 (420)
T KOG2096|consen  160 YKLVKKTDGSG-SHH--------------FVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQ  222 (420)
T ss_pred             EEeeecccCCC-Ccc--------------cccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceee
Confidence            98864322100 000              0001111122346667777777666 7799999999999999998 88999


Q ss_pred             eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC--------CccceeeecCCeeeEEEcCCCCCeEEEEecCC
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST--------HSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  231 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg  231 (358)
                      .+......-+..+.+|+| +++++++..--+++|.+--.+        ....+.+|.+.|..++|+++ ...+++.+.||
T Consensus       223 ~idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~-S~r~vtvSkDG  300 (420)
T KOG2096|consen  223 SIDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS-STRAVTVSKDG  300 (420)
T ss_pred             eeccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC-cceeEEEecCC
Confidence            988777778889999999 999999999999999974221        12335678999999999995 56899999999


Q ss_pred             eEEEEEcccCCCCCCCCCCCccEE----EeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCce
Q 018293          232 TIKGFDIRTAKSDPDSTSQQSSFT----LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA  307 (358)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  307 (358)
                      .+++||..-.....+.+  ..+..    +..-.+.-..+..+|.| ..|+... ...+++|..++++..... -..|...
T Consensus       301 ~wriwdtdVrY~~~qDp--k~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~s~-gs~l~~~~se~g~~~~~~-e~~h~~~  375 (420)
T KOG2096|consen  301 KWRIWDTDVRYEAGQDP--KILKEGSAPLHAAGSEPVRLELSPSG-DSLAVSF-GSDLKVFASEDGKDYPEL-EDIHSTT  375 (420)
T ss_pred             cEEEeeccceEecCCCc--hHhhcCCcchhhcCCCceEEEeCCCC-cEEEeec-CCceEEEEcccCccchhH-HHhhcCc
Confidence            99999987543221111  11111    11223334589999998 6665543 567999999988743322 2458899


Q ss_pred             eEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          308 VFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       308 v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      |.+++|+++|++ +++++ |..++++.-..
T Consensus       376 Is~is~~~~g~~-~atcG-dr~vrv~~ntp  403 (420)
T KOG2096|consen  376 ISSISYSSDGKY-IATCG-DRYVRVIRNTP  403 (420)
T ss_pred             eeeEEecCCCcE-Eeeec-ceeeeeecCCC
Confidence            999999999996 77665 67888887433

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=1.5e-24  Score=176.17  Aligned_cols=245  Identities=16%  Similarity=0.219  Sum_probs=197.3

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      ++..|...+++.||+ .|-|+|||+.......+...+.                      .......|.++.+.|+ ++.
T Consensus       424 AvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLd----------------------cl~rdnyiRSckL~pd-grt  479 (705)
T KOG0639|consen  424 AVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLD----------------------CLNRDNYIRSCKLLPD-GRT  479 (705)
T ss_pred             EEEecCCcceeEecC-CCeEEEeeccCCCCCCcccccc----------------------ccCcccceeeeEecCC-Cce
Confidence            455578888999998 5789999997543333222111                      1123467999999999 567


Q ss_pred             EEEEEcCCeEEEEECCCCce--eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEE
Q 018293          138 LASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA  215 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  215 (358)
                      |++|+.-.++.|||+....+  ...+....-.+.+++.+||. ++.+++..||.|.|||+.+...+..+.+|...+.|+.
T Consensus       480 LivGGeastlsiWDLAapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascId  558 (705)
T KOG0639|consen  480 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID  558 (705)
T ss_pred             EEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEE
Confidence            88899999999999986543  33344344567889999999 8899999999999999999999988899999999999


Q ss_pred             EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      .+++ +..+.+|+-|++|+.||++.+.         .+.. ....+.|.++..+|.+ .+|+.|-.++.+.|......+ 
T Consensus       559 is~d-GtklWTGGlDntvRcWDlregr---------qlqq-hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~-  625 (705)
T KOG0639|consen  559 ISKD-GTKLWTGGLDNTVRCWDLREGR---------QLQQ-HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPE-  625 (705)
T ss_pred             ecCC-CceeecCCCccceeehhhhhhh---------hhhh-hhhhhhheecccCCCc-cceeeecccCcEEEEecCCcc-
Confidence            9995 5589999999999999999873         2222 1235789999999998 899999999999998887665 


Q ss_pred             eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          296 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       296 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                        ...+..|..-|.++.|.+.|++ +++.+.|+.+..|.+.-|..+.+
T Consensus       626 --kyqlhlheScVLSlKFa~cGkw-fvStGkDnlLnawrtPyGasiFq  670 (705)
T KOG0639|consen  626 --KYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYGASIFQ  670 (705)
T ss_pred             --ceeecccccEEEEEEecccCce-eeecCchhhhhhccCccccceee
Confidence              5567778999999999999996 88899999999999988877654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.93  E-value=5.3e-24  Score=170.93  Aligned_cols=210  Identities=20%  Similarity=0.300  Sum_probs=171.9

Q ss_pred             ccCCCcccEEEEecCCCCC-cEEEEEEcCCeEEEEECCCC----ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEE
Q 018293          117 KKGSHTDSVLGLAWNKEFR-NILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVV  191 (358)
Q Consensus       117 ~~~~h~~~v~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  191 (358)
                      ...-+.+.|++++|+|... +++|+|..-|.|-+||+.+.    .-+..+..|..+|.++.|+|.+...+++.+.||+|+
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR  260 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR  260 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence            3445789999999999855 68999999999999999533    235566789999999999998888999999999999


Q ss_pred             EEEcccCCCccceee--ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEec
Q 018293          192 MKDARISTHSGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN  269 (358)
Q Consensus       192 i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  269 (358)
                      +-|++..........  ....+..+.|+.+.. .++.+..=|...+||++...        .....+..|...|++++++
T Consensus       261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~--------s~~~~~~lh~kKI~sv~~N  331 (498)
T KOG4328|consen  261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDG--------SEYENLRLHKKKITSVALN  331 (498)
T ss_pred             eeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCC--------ccchhhhhhhcccceeecC
Confidence            999987754432222  445677788887554 56666666799999999983        4466677888899999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEecCCCCcee--eEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          270 PLVPNLLATGSTDKMVKLWDLSNNQPSC--IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       270 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      |..+.+|+|++.|++.+|||++......  ......|...|.++.|||.+.. |+|-+.|..|+|||..
T Consensus       332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS  399 (498)
T ss_pred             CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence            9998999999999999999998754322  3556679999999999999885 8889999999999984

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=5.4e-25  Score=195.05  Aligned_cols=215  Identities=18%  Similarity=0.312  Sum_probs=177.7

Q ss_pred             cccEEEEecCCCCCc---EEEEEEcCCeEEEEECCC---C---ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEE
Q 018293          122 TDSVLGLAWNKEFRN---ILASASADKQVKIWDVAA---G---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM  192 (358)
Q Consensus       122 ~~~v~~~~~~~~~~~---~l~s~~~dg~v~iwd~~~---~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  192 (358)
                      ...-+.++|.+.+..   +||.|..||.|.+||...   +   ..+.+...|.+.|..+.|++..++++++|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            456789999887554   599999999999999865   2   3456777899999999999999789999999999999


Q ss_pred             EEcccCCCccce--eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecC--CceeEEEe
Q 018293          193 KDARISTHSGFK--WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--KAVCTISY  268 (358)
Q Consensus       193 ~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~  268 (358)
                      ||+...+.....  ....+.|.+++|+..-..+|++++.+|.+.|||+|..         +++..+..+.  ..+..++|
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~---------~pii~ls~~~~~~~~S~l~W  214 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK---------KPIIKLSDTPGRMHCSVLAW  214 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC---------CcccccccCCCccceeeeee
Confidence            999986654433  2345789999999988889999999999999999987         5555555443  35789999


Q ss_pred             cCCCCcEEEEEeCCCc---EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          269 NPLVPNLLATGSTDKM---VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       269 ~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      +|++...|++++.|..   |.+||+|.... .+..+.+|...|.++.|++.+..+|++++.|+.|.+|+.++++.+.++-
T Consensus       215 hP~~aTql~~As~dd~~PviqlWDlR~ass-P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p  293 (1049)
T KOG0307|consen  215 HPDHATQLLVASGDDSAPVIQLWDLRFASS-PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP  293 (1049)
T ss_pred             CCCCceeeeeecCCCCCceeEeecccccCC-chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence            9998778888877654   99999987653 5667789999999999999885579999999999999999998877654


Q ss_pred             c
Q 018293          346 S  346 (358)
Q Consensus       346 ~  346 (358)
                      .
T Consensus       294 ~  294 (1049)
T KOG0307|consen  294 A  294 (1049)
T ss_pred             C
Confidence            4

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.92  E-value=8.5e-23  Score=175.83  Aligned_cols=274  Identities=18%  Similarity=0.284  Sum_probs=204.6

Q ss_pred             EEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccc
Q 018293           23 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKK  102 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  102 (358)
                      .+++|+......|.+....    +....|+.+.++      +..+||.|..+|.|.+||+..+....             
T Consensus       223 ~~~vW~~~~p~~Pe~~~~~----~s~v~~~~f~p~------~p~ll~gG~y~GqV~lWD~~~~~~~~-------------  279 (555)
T KOG1587|consen  223 VLLVWSLKNPNTPELVLES----PSEVTCLKFCPF------DPNLLAGGCYNGQVVLWDLRKGSDTP-------------  279 (555)
T ss_pred             eEEEEecCCCCCceEEEec----CCceeEEEeccC------CcceEEeeccCceEEEEEccCCCCCC-------------
Confidence            5778888775444544443    334456666443      56789999999999999997654421             


Q ss_pred             cccccCCceeccccccCCCcccEEEEecCCCC-CcEEEEEEcCCeEEEEECCCCceee------eec------cccccee
Q 018293          103 KKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVAAGKCNL------TLE------HHTDKVQ  169 (358)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~------~~~------~~~~~v~  169 (358)
                              ..........|..+++.+.|..+- +.-+++++.||.|+.|+++.-....      ...      .....++
T Consensus       280 --------~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t  351 (555)
T KOG1587|consen  280 --------PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGAT  351 (555)
T ss_pred             --------CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccccccee
Confidence                    122223445799999999996541 1358899999999999886432211      111      1234688


Q ss_pred             eEEEcCCCCcEEEEEeCCCcEEEEEcccCCC--------ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293          170 AVAWNHHSPQILLSGSFDRSVVMKDARISTH--------SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  241 (358)
Q Consensus       170 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~  241 (358)
                      +++|.+..+..++.|+..|.|.--+....+.        ......|.++|.++.++|.....+++++ |.++++|.....
T Consensus       352 ~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~  430 (555)
T KOG1587|consen  352 SLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI  430 (555)
T ss_pred             eEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC
Confidence            9999999889999999999998744332221        1234457889999999999887777777 999999998832


Q ss_pred             CCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEE
Q 018293          242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVL  321 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  321 (358)
                              ..++..+..+...+++++|+|..+..++++..||.+.+||+......++.....+....+.+.|++.|+ ++
T Consensus       431 --------~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~-~l  501 (555)
T KOG1587|consen  431 --------ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGK-LL  501 (555)
T ss_pred             --------CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCc-EE
Confidence                    267777888888899999999988899999999999999998776555666555567788899999999 69


Q ss_pred             EEEccCCeEEEEEccC
Q 018293          322 AIGGSKGKLEIWDTLS  337 (358)
Q Consensus       322 ~~~~~dg~i~vw~~~~  337 (358)
                      ++|...|.+.+|++..
T Consensus       502 avGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  502 AVGDANGTTHILKLSE  517 (555)
T ss_pred             EEecCCCcEEEEEcCc
Confidence            9999999999999953

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.5e-22  Score=170.18  Aligned_cols=237  Identities=19%  Similarity=0.268  Sum_probs=190.3

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccC-CCcccEEEEecCCCCCcEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKG-SHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l  138 (358)
                      +|+.+.+.||.+-.||.|.||++...                          +.....+. +..+.|.+++|++.  ..|
T Consensus        32 A~s~kS~~lAvsRt~g~IEiwN~~~~--------------------------w~~~~vi~g~~drsIE~L~W~e~--~RL   83 (691)
T KOG2048|consen   32 AYSHKSNQLAVSRTDGNIEIWNLSNN--------------------------WFLEPVIHGPEDRSIESLAWAEG--GRL   83 (691)
T ss_pred             EEeccCCceeeeccCCcEEEEccCCC--------------------------ceeeEEEecCCCCceeeEEEccC--CeE
Confidence            44888999999999999999999742                          11222222 34568999999965  378


Q ss_pred             EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc--ceeeecCCeeeEEE
Q 018293          139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAW  216 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~  216 (358)
                      ++.+.+|.|.-||+.+++....+....+.|.+++.+|.+ ..++.|+.||.+..++...+....  .+....+.+.+++|
T Consensus        84 FS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw  162 (691)
T KOG2048|consen   84 FSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSW  162 (691)
T ss_pred             EeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEe
Confidence            899999999999999999999999999999999999998 889999999977777776554322  22345688999999


Q ss_pred             cCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-------ee-cCCceeEEEecCCCCcEEEEEeCCCcEEEE
Q 018293          217 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-------HA-HDKAVCTISYNPLVPNLLATGSTDKMVKLW  288 (358)
Q Consensus       217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-------~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~  288 (358)
                      +|+ +..++.|+.||.|++||..++.         .+...       .. ...-|.++.+-.+  ..|++|...|+|.+|
T Consensus       163 ~~~-~~~i~~Gs~Dg~Iriwd~~~~~---------t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FW  230 (691)
T KOG2048|consen  163 NPT-GTKIAGGSIDGVIRIWDVKSGQ---------TLHIITMQLDRLSKREPTIVWSVLFLRD--STIASGDSAGTVTFW  230 (691)
T ss_pred             cCC-ccEEEecccCceEEEEEcCCCc---------eEEEeeecccccccCCceEEEEEEEeec--CcEEEecCCceEEEE
Confidence            995 4579999999999999999873         23211       11 2234677777765  489999999999999


Q ss_pred             ecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          289 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      |...+.  .+..+..|.+.|.+++..+++.+ +.++|.|+.|.-|...+++.
T Consensus       231 d~~~gT--LiqS~~~h~adVl~Lav~~~~d~-vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  231 DSIFGT--LIQSHSCHDADVLALAVADNEDR-VFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             cccCcc--hhhhhhhhhcceeEEEEcCCCCe-EEEccCCCceEEEEecCCcc
Confidence            999988  57778889999999999999885 88899999999998877654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.1e-23  Score=161.66  Aligned_cols=240  Identities=17%  Similarity=0.256  Sum_probs=178.2

Q ss_pred             ceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC-CCcEEEEEEcC
Q 018293           66 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILASASAD  144 (358)
Q Consensus        66 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d  144 (358)
                      ..+|++-..|.|++||..+++.+.                           .+.++...++.+.|... +.+.+.+|+.|
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~---------------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssD   93 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLE---------------------------EFKGPPATTNGVRFISCDSPHGVISCSSD   93 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhh---------------------------eecCCCCcccceEEecCCCCCeeEEeccC
Confidence            578999999999999998765554                           45567788888888653 57789999999


Q ss_pred             CeEEEEECCCCceeeee--cccc-cceeeEEEcCCCCcEEEEEe----CCCcEEEEEcccCCCc--cceeeecCCeeeEE
Q 018293          145 KQVKIWDVAAGKCNLTL--EHHT-DKVQAVAWNHHSPQILLSGS----FDRSVVMKDARISTHS--GFKWAVAADVESLA  215 (358)
Q Consensus       145 g~v~iwd~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~--~~~~~~~~~i~~~~  215 (358)
                      |+|++||++.......+  ..+. .+..+++..-.+ +++++|.    .+..+.+||+|..+..  .....|...|+++.
T Consensus        94 G~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr  172 (376)
T KOG1188|consen   94 GTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR  172 (376)
T ss_pred             CeEEEEEeecchhhhheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE
Confidence            99999999987554444  3343 456667666555 6777775    3678999999988763  23446889999999


Q ss_pred             EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      |+|.+++++++|+.||.|.+||+.....      ...+.....|...|.++.|..++-..|.+-+..+...+|+++.+..
T Consensus       173 FHP~~pnlLlSGSvDGLvnlfD~~~d~E------eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  173 FHPSDPNLLLSGSVDGLVNLFDTKKDNE------EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             ecCCCCCeEEeecccceEEeeecCCCcc------hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence            9999999999999999999999987622      1334444567778999999887655788888888899998865431


Q ss_pred             e-----------------------------------------------------------eeEecC-CCCceeEEEEEcC
Q 018293          296 S-----------------------------------------------------------CIASRN-PKAGAVFSVAFSE  315 (358)
Q Consensus       296 ~-----------------------------------------------------------~~~~~~-~~~~~v~~~~~~~  315 (358)
                      .                                                           ....+. +|...|.++.|..
T Consensus       247 ~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~  326 (376)
T KOG1188|consen  247 ETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV  326 (376)
T ss_pred             hhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc
Confidence            1                                                           001111 2344466666766


Q ss_pred             CCCeEEEEEccCCeEEEEEccCCCc
Q 018293          316 DSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       316 ~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      .+. ++.+||.||.+.+|.......
T Consensus       327 ~~~-~l~TGGEDG~l~~Wk~~da~e  350 (376)
T KOG1188|consen  327 KND-VLYTGGEDGLLQAWKVEDATE  350 (376)
T ss_pred             ccc-eeeccCCCceEEEEecCCccc
Confidence            666 699999999999999654333

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=2.8e-22  Score=167.22  Aligned_cols=237  Identities=14%  Similarity=0.127  Sum_probs=164.3

Q ss_pred             CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293           65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  144 (358)
Q Consensus        65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  144 (358)
                      ++.+++++.|+.|++||+.+++...                           .+..+ ..+.+++|+|++..++++++.+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~---------------------------~~~~~-~~~~~l~~~~dg~~l~~~~~~~   52 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTR---------------------------TFPVG-QRPRGITLSKDGKLLYVCASDS   52 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEE---------------------------EEECC-CCCCceEECCCCCEEEEEECCC
Confidence            3578899999999999997644322                           12223 3367899999955445677889


Q ss_pred             CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeE
Q 018293          145 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF  224 (358)
Q Consensus       145 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  224 (358)
                      +.|++||..+++....+..+.. +..++|+|++..++++++.++.+++||+++.+... .......+..++|+|++. ++
T Consensus        53 ~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~dg~-~l  129 (300)
T TIGR03866        53 DTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLA-EIPVGVEPEGMAVSPDGK-IV  129 (300)
T ss_pred             CeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe-EeeCCCCcceEEECCCCC-EE
Confidence            9999999999888777765443 56789999994444555678999999998765433 223334578899999654 67


Q ss_pred             EEEecCC-eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEE-EEEeCCCcEEEEecCCCCceeeEecC
Q 018293          225 VVSLEDG-TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL-ATGSTDKMVKLWDLSNNQPSCIASRN  302 (358)
Q Consensus       225 ~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~  302 (358)
                      +++..++ .+.+||.++.         ....... ......+++|+|++ .+| +++..++.|++||+++++........
T Consensus       130 ~~~~~~~~~~~~~d~~~~---------~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~  198 (300)
T TIGR03866       130 VNTSETTNMAHFIDTKTY---------EIVDNVL-VDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVIKKITFE  198 (300)
T ss_pred             EEEecCCCeEEEEeCCCC---------eEEEEEE-cCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence            7766654 5677898765         3333222 23345789999998 555 55556999999999987643222221


Q ss_pred             C---C--CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          303 P---K--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       303 ~---~--~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      .   +  ......++|+|++++++++.+.++.+.+||+.+++.+..
T Consensus       199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~  244 (300)
T TIGR03866       199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY  244 (300)
T ss_pred             ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence            1   1  112346889999997666666678899999988776543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.1e-22  Score=168.22  Aligned_cols=276  Identities=18%  Similarity=0.239  Sum_probs=211.1

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCC--CCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE   78 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~   78 (358)
                      |+++-+.+.||+++.++     .+-+|+....  .++.+..+.+    ..+-.+.|       + ++.+|.+.+.+|.|.
T Consensus        31 lA~s~kS~~lAvsRt~g-----~IEiwN~~~~w~~~~vi~g~~d----rsIE~L~W-------~-e~~RLFS~g~sg~i~   93 (691)
T KOG2048|consen   31 LAYSHKSNQLAVSRTDG-----NIEIWNLSNNWFLEPVIHGPED----RSIESLAW-------A-EGGRLFSSGLSGSIT   93 (691)
T ss_pred             EEEeccCCceeeeccCC-----cEEEEccCCCceeeEEEecCCC----CceeeEEE-------c-cCCeEEeecCCceEE
Confidence            46788888999998876     5566665543  2223333332    22235666       4 566788888899999


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN  158 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  158 (358)
                      -||+.+.+...                           .+....+.|++++.+|. +..++.|+.||.+..++...++..
T Consensus        94 EwDl~~lk~~~---------------------------~~d~~gg~IWsiai~p~-~~~l~IgcddGvl~~~s~~p~~I~  145 (691)
T KOG2048|consen   94 EWDLHTLKQKY---------------------------NIDSNGGAIWSIAINPE-NTILAIGCDDGVLYDFSIGPDKIT  145 (691)
T ss_pred             EEecccCceeE---------------------------EecCCCcceeEEEeCCc-cceEEeecCCceEEEEecCCceEE
Confidence            99997654433                           34456789999999999 679999999998888887777554


Q ss_pred             e--eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee----e----ecCCeeeEEEcCCCCCeEEEEe
Q 018293          159 L--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----A----VAADVESLAWDPHAEHSFVVSL  228 (358)
Q Consensus       159 ~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~----~~~~i~~~~~~~~~~~~~~~~~  228 (358)
                      .  .+...++.+.++.|+|++ ..+++|+.||.|++||...+.......    .    ...-|+++.|-.+  ..+++|.
T Consensus       146 ~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgD  222 (691)
T KOG2048|consen  146 YKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD--STIASGD  222 (691)
T ss_pred             EEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec--CcEEEec
Confidence            3  334456889999999999 889999999999999998876544111    1    2233777777753  3899999


Q ss_pred             cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc--eeeEecCCCCc
Q 018293          229 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIASRNPKAG  306 (358)
Q Consensus       229 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~  306 (358)
                      ..|.|++||...+         ..+.....|...|.+++..+++ ..+++++.|+.|..|...+...  ........|..
T Consensus       223 S~G~V~FWd~~~g---------TLiqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~h  292 (691)
T KOG2048|consen  223 SAGTVTFWDSIFG---------TLIQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAH  292 (691)
T ss_pred             CCceEEEEcccCc---------chhhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccceeeeccccCCcc
Confidence            9999999999988         7888899999999999999987 8999999999999998877643  23344567888


Q ss_pred             eeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          307 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       307 ~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      .|.+++..++   .+++|+.|..+.+-....
T Consensus       293 dvrs~av~~~---~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  293 DVRSMAVIEN---ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             cceeeeeecc---eEEecceeeEEEEccccc
Confidence            8999999988   588999999988876654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.92  E-value=3.2e-22  Score=151.86  Aligned_cols=207  Identities=20%  Similarity=0.347  Sum_probs=165.4

Q ss_pred             CCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce-eeeec-----ccccceeeEEEcCCCCcEEEEEeCCCcEEEE
Q 018293          120 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTLE-----HHTDKVQAVAWNHHSPQILLSGSFDRSVVMK  193 (358)
Q Consensus       120 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  193 (358)
                      .+-+.|.|+.|.|+ +..+++-. |..|.+|+++.+.. +..+.     ++....++-+|+|......+....|+++..|
T Consensus       121 eavg~i~cvew~Pn-s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~  198 (370)
T KOG1007|consen  121 EAVGKINCVEWEPN-SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFW  198 (370)
T ss_pred             HHhCceeeEEEcCC-CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEE
Confidence            45568999999998 55666554 88999999987755 33332     3566788889999322334445569999999


Q ss_pred             EcccCCCcc-ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293          194 DARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  272 (358)
Q Consensus       194 d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  272 (358)
                      |+++..... ....|...+..+.|+|+...++++++.||.|++||.|+.        ..+++.+.+|...+.++.|+|..
T Consensus       199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--------k~pv~el~~HsHWvW~VRfn~~h  270 (370)
T KOG1007|consen  199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--------KFPVQELPGHSHWVWAVRFNPEH  270 (370)
T ss_pred             EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------CccccccCCCceEEEEEEecCcc
Confidence            999776543 334577889999999998889999999999999999987        37899999999999999999988


Q ss_pred             CcEEEEEeCCCcEEEEecCCCC------------------------c---eeeEecCCCCceeEEEEEcCCCCeEEEEEc
Q 018293          273 PNLLATGSTDKMVKLWDLSNNQ------------------------P---SCIASRNPKAGAVFSVAFSEDSPFVLAIGG  325 (358)
Q Consensus       273 ~~~l~~~~~dg~i~i~d~~~~~------------------------~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  325 (358)
                      ..++++|+.|..|.+|....-.                        +   -.+..+..|...|.+++|+.-.++++|+-+
T Consensus       271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS  350 (370)
T KOG1007|consen  271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS  350 (370)
T ss_pred             ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence            7899999999999999763311                        0   123456778899999999999999999999


Q ss_pred             cCCeEEEEEcc
Q 018293          326 SKGKLEIWDTL  336 (358)
Q Consensus       326 ~dg~i~vw~~~  336 (358)
                      .||.+.|=.+.
T Consensus       351 YDGRviIs~V~  361 (370)
T KOG1007|consen  351 YDGRVIISSVP  361 (370)
T ss_pred             cCceEEeecCC
Confidence            99999886654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.91  E-value=1.3e-22  Score=156.36  Aligned_cols=251  Identities=17%  Similarity=0.323  Sum_probs=182.3

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecC-------C
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-------K  132 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-------~  132 (358)
                      .|||||.-|++-+.|..+.+|++.........      +.       +...+...... ......|...+|-       |
T Consensus        56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~~------~~-------~~~~~~~~~~r-~~eg~tvydy~wYs~M~s~qP  121 (406)
T KOG2919|consen   56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA------DG-------PLNFSKHLSYR-YQEGETVYDYCWYSRMKSDQP  121 (406)
T ss_pred             eeCCCCceEEeecccCeeeEEecChhhcccCC------CC-------ccccccceeEE-eccCCEEEEEEeeeccccCCC
Confidence            35999999999999999999998632111100      00       00000001111 1133567777774       5


Q ss_pred             CCCcEEEEEEcCCeEEEEECCCCceeeeecc--ccc---ceeeEEEcCCCCcEEEEEeCCCcEEEEEc-ccCCCcc--c-
Q 018293          133 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTD---KVQAVAWNHHSPQILLSGSFDRSVVMKDA-RISTHSG--F-  203 (358)
Q Consensus       133 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~--~-  203 (358)
                      + ..++++.+.+.-|++||.-+|+....+.+  |.+   ...+++|+||| ..|++ +....|+++|+ +.+....  . 
T Consensus       122 ~-t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfa-GykrcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  122 S-TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFA-GYKRCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             c-cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEee-cccceEEEeeccCCCCCCcchhh
Confidence            5 67999999999999999999988777654  322   45689999999 55654 55789999999 4433211  1 


Q ss_pred             ----eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE
Q 018293          204 ----KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  279 (358)
Q Consensus       204 ----~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~  279 (358)
                          ..+..+-+.+++|+|.+...+++|+....+-+|.-...         .+++.+.+|.+.|+.++|.++| +.|++|
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~---------~pl~llggh~gGvThL~~~edG-n~lfsG  268 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR---------RPLQLLGGHGGGVTHLQWCEDG-NKLFSG  268 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC---------CceeeecccCCCeeeEEeccCc-Ceeccc
Confidence                12335678999999998889999999999999888776         7888999999999999999999 677777


Q ss_pred             eC-CCcEEEEecCCCCceeeEecCCCCc-eeEE--EEEcCCCCeEEEEEccCCeEEEEEccC-CC
Q 018293          280 ST-DKMVKLWDLSNNQPSCIASRNPKAG-AVFS--VAFSEDSPFVLAIGGSKGKLEIWDTLS-DA  339 (358)
Q Consensus       280 ~~-dg~i~i~d~~~~~~~~~~~~~~~~~-~v~~--~~~~~~~~~~l~~~~~dg~i~vw~~~~-~~  339 (358)
                      +. |..|..||++..+. .+..+..|.+ .-..  ....|+++ +|++|+.||.|++||+++ +.
T Consensus       269 aRk~dkIl~WDiR~~~~-pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  269 ARKDDKILCWDIRYSRD-PVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             ccCCCeEEEEeehhccc-hhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCC
Confidence            65 77899999998653 4556666644 2223  44568899 599999999999999987 44

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.91  E-value=5e-23  Score=173.08  Aligned_cols=271  Identities=17%  Similarity=0.329  Sum_probs=204.6

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|.|+|..++.+..+      ++++|+..++...+....|+..    +.|++|       +.||+++|+|+.|..|.+|
T Consensus        18 ~afkPDGsqL~lAAg~------rlliyD~ndG~llqtLKgHKDt----VycVAy-------s~dGkrFASG~aDK~VI~W   80 (1081)
T KOG1538|consen   18 IAFKPDGTQLILAAGS------RLLVYDTSDGTLLQPLKGHKDT----VYCVAY-------AKDGKRFASGSADKSVIIW   80 (1081)
T ss_pred             eEECCCCceEEEecCC------EEEEEeCCCcccccccccccce----EEEEEE-------ccCCceeccCCCceeEEEe
Confidence            5789999999999444      9999999998776655555333    348777       8999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      +-.-...+.                             ..|.+.|.|+.|+|- .+.|++++-+ ..-+|..+... +..
T Consensus        81 ~~klEG~Lk-----------------------------YSH~D~IQCMsFNP~-~h~LasCsLs-dFglWS~~qK~-V~K  128 (1081)
T KOG1538|consen   81 TSKLEGILK-----------------------------YSHNDAIQCMSFNPI-THQLASCSLS-DFGLWSPEQKS-VSK  128 (1081)
T ss_pred             cccccceee-----------------------------eccCCeeeEeecCch-HHHhhhcchh-hccccChhhhh-HHh
Confidence            865322211                             259999999999999 6788888764 57889866443 222


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee--eecCCeeeEEEcCCCC----CeEEEEecCCeEE
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAE----HSFVVSLEDGTIK  234 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~----~~~~~~~~dg~i~  234 (358)
                      .+ ....+.+++|..|| ++++.|-.+|+|.+-+-...+......  +..++|.+++|+|..+    ..+++.....++.
T Consensus       129 ~k-ss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLS  206 (1081)
T KOG1538|consen  129 HK-SSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLS  206 (1081)
T ss_pred             hh-hheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeE
Confidence            22 34678899999999 999999999999998755444433222  3567899999999632    4677777788888


Q ss_pred             EEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEc
Q 018293          235 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS  314 (358)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  314 (358)
                      +|.+...          .+..-..-.-...|+.+.|+| .+++.|+.|+.+.+|-...-   .+.+.......|+.++..
T Consensus       207 Fy~LsG~----------~Igk~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~Gv---rLGTvg~~D~WIWtV~~~  272 (1081)
T KOG1538|consen  207 FYQLSGK----------QIGKDRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRDGV---RLGTVGEQDSWIWTVQAK  272 (1081)
T ss_pred             EEEecce----------eecccccCCCCchhheeccCC-cEEEEccCCCceEEEeecCe---EEeeccccceeEEEEEEc
Confidence            8887643          122112222334688999998 89999999999999975443   355555677899999999


Q ss_pred             CCCCeEEEEEccCCeEEEEEccC
Q 018293          315 EDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       315 ~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      |++++ ++.|+.||+|.-|++..
T Consensus       273 PNsQ~-v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  273 PNSQY-VVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             cCCce-EEEEEccCeeehhhhHH
Confidence            99996 88899999999999864

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=9.9e-23  Score=156.69  Aligned_cols=209  Identities=18%  Similarity=0.226  Sum_probs=162.3

Q ss_pred             cccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce-----eeeecccccceeeEEEcCCCCcEEEEEeCCC
Q 018293          114 IKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWNHHSPQILLSGSFDR  188 (358)
Q Consensus       114 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  188 (358)
                      ....+++|.+.|++++|+.+ +++|++++.|++|++|++++...     ++.-- .-+..+.+.|.||...++++.-...
T Consensus        78 ~~~~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             hhhhhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCC
Confidence            34567899999999999999 77999999999999999986432     11111 1235688999999977777777788


Q ss_pred             cEEEEEcccCCCcc------------ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE
Q 018293          189 SVVMKDARISTHSG------------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL  256 (358)
Q Consensus       189 ~i~i~d~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  256 (358)
                      ++++|-+...+.-.            ....|.-.+..+-... +..++++++.|..|.+|+++ +         +.+..+
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-G---------q~L~~i  224 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-G---------QLLQSI  224 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-C---------ceeeee
Confidence            89999875433211            1112334455555554 56799999999999999999 4         667777


Q ss_pred             eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC------CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeE
Q 018293          257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKL  330 (358)
Q Consensus       257 ~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  330 (358)
                      ......-...+.+|+| +++++++..-.|++|.+--.      +...++.+.+|...|..++|+++.+ .+++.+.||.+
T Consensus       225 dtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~w  302 (420)
T KOG2096|consen  225 DTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKW  302 (420)
T ss_pred             ccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcE
Confidence            7766777888999999 89999999899999987432      2235677899999999999999999 59999999999


Q ss_pred             EEEEccC
Q 018293          331 EIWDTLS  337 (358)
Q Consensus       331 ~vw~~~~  337 (358)
                      ++||+.-
T Consensus       303 riwdtdV  309 (420)
T KOG2096|consen  303 RIWDTDV  309 (420)
T ss_pred             EEeeccc
Confidence            9999863

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.91  E-value=2.4e-22  Score=154.88  Aligned_cols=282  Identities=18%  Similarity=0.279  Sum_probs=203.0

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCC-------CCCceEeece--eecCCcccceeeecCCccccCCCceEEecC
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDG-------GDPNLYVHHH--IIIPAFPLCMAWLDCPLKDREKGNFMAVGS   72 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~   72 (358)
                      ..+|+|.-|++-..++     .+.+|+...+       .......+..  ......+....|.+.--.--|+..++|+.+
T Consensus        56 kWSPDGSciL~~sedn-----~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   56 KWSPDGSCILSLSEDN-----CLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             eeCCCCceEEeecccC-----eeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            4689999999997776     5555554221       1111111221  122333445667654333468889999999


Q ss_pred             CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcc---cEEEEecCCCCCcEEEEEEcCCeEEE
Q 018293           73 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD---SVLGLAWNKEFRNILASASADKQVKI  149 (358)
Q Consensus        73 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~~~dg~v~i  149 (358)
                      .+.-|.+||.-+++........                         .|..   ...+++|+|| +..|++| ....|++
T Consensus       131 r~~PIh~wdaftG~lraSy~~y-------------------------dh~de~taAhsL~Fs~D-GeqlfaG-ykrcirv  183 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAY-------------------------DHQDEYTAAHSLQFSPD-GEQLFAG-YKRCIRV  183 (406)
T ss_pred             ccCceeeeeccccccccchhhh-------------------------hhHHhhhhheeEEecCC-CCeEeec-ccceEEE
Confidence            9999999999876654432211                         2333   3458999999 5577665 5578999


Q ss_pred             EEC-CCCce--ee-ee----cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCC
Q 018293          150 WDV-AAGKC--NL-TL----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  221 (358)
Q Consensus       150 wd~-~~~~~--~~-~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  221 (358)
                      +|+ +.|.-  +. ++    .+..+-+.+++|+|.....++.++....+-||.-....+.....+|.+.|+.+.|.++++
T Consensus       184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn  263 (406)
T KOG2919|consen  184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN  263 (406)
T ss_pred             eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC
Confidence            999 44422  11 11    123677899999998878999999999999999888888888889999999999999776


Q ss_pred             CeEEEE-ecCCeEEEEEcccCCCCCCCCCCCccEEEeecCC-ceeEE--EecCCCCcEEEEEeCCCcEEEEecCC-CCce
Q 018293          222 HSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-AVCTI--SYNPLVPNLLATGSTDKMVKLWDLSN-NQPS  296 (358)
Q Consensus       222 ~~~~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~i~~i--~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~  296 (358)
                       .+++| -.+-.|..||+|..        ..++..+..|.. .-..|  ...|.+ ++|++|+.||.|++||+.+ +.  
T Consensus       264 -~lfsGaRk~dkIl~WDiR~~--------~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~gn--  331 (406)
T KOG2919|consen  264 -KLFSGARKDDKILCWDIRYS--------RDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLGN--  331 (406)
T ss_pred             -eecccccCCCeEEEEeehhc--------cchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCCC--
Confidence             55555 45789999999987        367777777755 33334  445777 8999999999999999988 44  


Q ss_pred             eeEecCCCCceeEEEEEcCCCCeEEEEEccCC
Q 018293          297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG  328 (358)
Q Consensus       297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  328 (358)
                      .+..+..+...++.++++|--+ ++|+++...
T Consensus       332 ~~sv~~~~sd~vNgvslnP~mp-ilatssGqr  362 (406)
T KOG2919|consen  332 EVSVTGNYSDTVNGVSLNPIMP-ILATSSGQR  362 (406)
T ss_pred             cccccccccccccceecCcccc-eeeeccCce
Confidence            3455667888899999999977 788776543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=4.2e-22  Score=152.49  Aligned_cols=261  Identities=19%  Similarity=0.304  Sum_probs=184.2

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEec-cCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEE-SDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      .|.+.|+.++++.++.     .+.+|+. .....-..-.+- ......+..+.|.+     ..-|+.+|+++.|+++.||
T Consensus        20 s~D~~GRRmAtCSsDq-----~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAh-----PEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen   20 SFDFYGRRMATCSSDQ-----TVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAH-----PEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             eecccCceeeeccCCC-----cEEEEeccCCCCceEEeeeE-EecCCcEEEEEecC-----ccccceEEEEecCCceeee
Confidence            5788999999998876     6666763 222222221111 12234455888863     3459999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC-CcEEEEEEcCCeEEEEECCC-----
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVAA-----  154 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~-----  154 (358)
                      .-...+.                  .....+......+......|+.+.|.|.. +-++|+++.||.+|||+.-.     
T Consensus        89 EE~~~~~------------------~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs  150 (361)
T KOG2445|consen   89 EEQEKSE------------------EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS  150 (361)
T ss_pred             eeccccc------------------ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc
Confidence            8642111                  11224566677778888999999999862 45799999999999998643     


Q ss_pred             -Cceeeeec-------ccccceeeEEEcCCC--CcEEEEEeCC-----CcEEEEEcccCC----CccceeeecCCeeeEE
Q 018293          155 -GKCNLTLE-------HHTDKVQAVAWNHHS--PQILLSGSFD-----RSVVMKDARIST----HSGFKWAVAADVESLA  215 (358)
Q Consensus       155 -~~~~~~~~-------~~~~~v~~~~~~~~~--~~~l~~~~~d-----g~i~i~d~~~~~----~~~~~~~~~~~i~~~~  215 (358)
                       ..+..+++       .+..+..|+.|+|..  ..+|+.|+.+     +.++||......    ....+..+..+|+.++
T Consensus       151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~  230 (361)
T KOG2445|consen  151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDIS  230 (361)
T ss_pred             cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeee
Confidence             23333443       466788899999743  3567777755     478888876543    2334557889999999


Q ss_pred             EcCCCC---CeEEEEecCCeEEEEEcccCCC--------CC---CCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC
Q 018293          216 WDPHAE---HSFVVSLEDGTIKGFDIRTAKS--------DP---DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  281 (358)
Q Consensus       216 ~~~~~~---~~~~~~~~dg~i~i~d~~~~~~--------~~---~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~  281 (358)
                      |.|+-+   .++++++.|| |+||.++....        ..   .......+..+..|.++|..+.|+-.| ..|++.+.
T Consensus       231 wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGd  308 (361)
T KOG2445|consen  231 WAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGD  308 (361)
T ss_pred             eccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCC
Confidence            999643   4789999999 99999985321        00   011123445577899999999999988 89999999


Q ss_pred             CCcEEEEecCCC
Q 018293          282 DKMVKLWDLSNN  293 (358)
Q Consensus       282 dg~i~i~d~~~~  293 (358)
                      ||.|++|...-.
T Consensus       309 DG~VRLWkany~  320 (361)
T KOG2445|consen  309 DGCVRLWKANYN  320 (361)
T ss_pred             Cceeeehhhhhh
Confidence            999999987643

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.91  E-value=1.4e-22  Score=160.00  Aligned_cols=221  Identities=19%  Similarity=0.324  Sum_probs=177.0

Q ss_pred             ccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC-------ceeeeecccccceeeEEEcCCCCcEEEEEeCCCc
Q 018293          117 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS  189 (358)
Q Consensus       117 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  189 (358)
                      ...||+++|..++|+|.+.+.||+|+.|.+|.||++-.+       +++..+.+|...|-.++|+|.-.+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            456899999999999998899999999999999998654       4567788999999999999998899999999999


Q ss_pred             EEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCc-eeEEEe
Q 018293          190 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA-VCTISY  268 (358)
Q Consensus       190 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~  268 (358)
                      |.+||+.+++.... ..|...|.++.|+.++ .++++.+.|..|+|||.+++         ..+..-.+|.+. -..+.|
T Consensus       156 v~iWnv~tgeali~-l~hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~---------~~v~e~~~heG~k~~Raif  224 (472)
T KOG0303|consen  156 VSIWNVGTGEALIT-LDHPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRG---------TVVSEGVAHEGAKPARAIF  224 (472)
T ss_pred             EEEEeccCCceeee-cCCCCeEEEEEeccCC-ceeeeecccceeEEEcCCCC---------cEeeecccccCCCcceeEE
Confidence            99999999987764 4499999999999955 59999999999999999998         556666667543 345567


Q ss_pred             cCCCCcEEEEEe---CCCcEEEEecCCCC-ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          269 NPLVPNLLATGS---TDKMVKLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       269 ~~~~~~~l~~~~---~dg~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      -.++ .++-||-   .+..+.+||..+.+ +....++... +.|.---|.+|...++++|-.|+.|+-|.+.+.......
T Consensus       225 l~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hy  302 (472)
T KOG0303|consen  225 LASG-KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHY  302 (472)
T ss_pred             eccC-ceeeeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEE
Confidence            7777 5555553   26779999987643 3444455443 446556688898877888889999999999988766555


Q ss_pred             cccCcC
Q 018293          345 FSKYSK  350 (358)
Q Consensus       345 ~~~~~~  350 (358)
                      +..+..
T Consensus       303 ln~f~S  308 (472)
T KOG0303|consen  303 LNTFSS  308 (472)
T ss_pred             eccccc
Confidence            555543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=4.6e-22  Score=152.80  Aligned_cols=291  Identities=13%  Similarity=0.206  Sum_probs=203.8

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|++-|.+|++|+.++     .+.+|+..+...-.++..|..++    .|+.|       |+||+.|+|++.|..|.+|
T Consensus        29 ~~Fs~~G~~lAvGc~nG-----~vvI~D~~T~~iar~lsaH~~pi----~sl~W-------S~dgr~LltsS~D~si~lw   92 (405)
T KOG1273|consen   29 CQFSRWGDYLAVGCANG-----RVVIYDFDTFRIARMLSAHVRPI----TSLCW-------SRDGRKLLTSSRDWSIKLW   92 (405)
T ss_pred             EEeccCcceeeeeccCC-----cEEEEEccccchhhhhhccccce----eEEEe-------cCCCCEeeeecCCceeEEE
Confidence            36999999999999987     77777766644445555554333    35656       9999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      |+..+..+..+.                            ...+|+...|+|...+..++.-.+..-.+-++..++.. .
T Consensus        93 Dl~~gs~l~rir----------------------------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~  143 (405)
T KOG1273|consen   93 DLLKGSPLKRIR----------------------------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-V  143 (405)
T ss_pred             eccCCCceeEEE----------------------------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-e
Confidence            998776554332                            56789999999987777777666666666666543211 1


Q ss_pred             ec----c-cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeec-CCeeeEEEcCCCCCeEEEEecCCeEE
Q 018293          161 LE----H-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-ADVESLAWDPHAEHSFVVSLEDGTIK  234 (358)
Q Consensus       161 ~~----~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~dg~i~  234 (358)
                      +.    + ......+..|.+.| +++++|...|.+.++|..+.+.+....... ..|..+.++. .+..++..+.|..|+
T Consensus       144 Lp~d~d~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR  221 (405)
T KOG1273|consen  144 LPKDDDGDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIR  221 (405)
T ss_pred             ccCCCccccccccccccccCCC-CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEE
Confidence            11    0 11122334678888 899999999999999999988776444443 6788888988 456899999999999


Q ss_pred             EEEcccCCCCCCCCCCCccEEEee--cCCceeEEEecCCCCcEEEEEe-CCCcEEEEecCCCCceeeEecCCCC-ceeEE
Q 018293          235 GFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQPSCIASRNPKA-GAVFS  310 (358)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~-~~v~~  310 (358)
                      .|+++.-..........+.+.+..  ...+-.+++|+.+| .++++++ ....++||....+.  .+..+.+.. .....
T Consensus       222 ~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~~~Gs--LVKILhG~kgE~l~D  298 (405)
T KOG1273|consen  222 TYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEKSIGS--LVKILHGTKGEELLD  298 (405)
T ss_pred             EEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEecCCcc--eeeeecCCchhheee
Confidence            999984321100000111111111  12345788999988 6666655 45669999999998  455566655 56778


Q ss_pred             EEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          311 VAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       311 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      +.|+|-.. ++++- ..|.+++|....-+....
T Consensus       299 V~whp~rp-~i~si-~sg~v~iw~~~~~enwsa  329 (405)
T KOG1273|consen  299 VNWHPVRP-IIASI-ASGVVYIWAVVQVENWSA  329 (405)
T ss_pred             ccccccee-eeeec-cCCceEEEEeecccchhh
Confidence            99999988 46655 778999999876655443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.90  E-value=5.7e-22  Score=150.63  Aligned_cols=256  Identities=20%  Similarity=0.292  Sum_probs=190.0

Q ss_pred             CCcccceeeecCCccccCCCceEEecCC----CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCC
Q 018293           46 PAFPLCMAWLDCPLKDREKGNFMAVGSM----EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH  121 (358)
Q Consensus        46 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  121 (358)
                      +.+.+.+.|..   + .....+||.|+.    .+.|.|-.++.....                       ...... ..|
T Consensus        44 p~~lya~~Ws~---~-~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e-----------------------~~~~a~-fd~   95 (364)
T KOG0290|consen   44 PWPLYAMNWSV---R-PDKKFRLAVGSFIEEYNNKVQIVQLDEDSGE-----------------------LVEDAN-FDH   95 (364)
T ss_pred             CCceeeecccc---C-CCcceeEEEeeeccccCCeeEEEEEccCCCc-----------------------eeccCC-CCC
Confidence            33444666632   2 234567888874    467777776521110                       000011 358


Q ss_pred             cccEEEEecCCCC----CcEEEEEEcCCeEEEEECCC--Cce--eee-----ecccccceeeEEEcCCCCcEEEEEeCCC
Q 018293          122 TDSVLGLAWNKEF----RNILASASADKQVKIWDVAA--GKC--NLT-----LEHHTDKVQAVAWNHHSPQILLSGSFDR  188 (358)
Q Consensus       122 ~~~v~~~~~~~~~----~~~l~s~~~dg~v~iwd~~~--~~~--~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg  188 (358)
                      .-+++.+.|.|+.    ..+||+.+  -.+|+|.+..  .+.  ...     -..+..++++..|+.-.++++.+++-|-
T Consensus        96 ~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT  173 (364)
T KOG0290|consen   96 PYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT  173 (364)
T ss_pred             CCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence            9999999999983    23666654  4799999873  211  111     1246679999999998889999999999


Q ss_pred             cEEEEEcccCCC---ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeE
Q 018293          189 SVVMKDARISTH---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT  265 (358)
Q Consensus       189 ~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~  265 (358)
                      ++.+||++++..   ...+..|...|..++|...+.+.|++.+.||.+++||+|....      ...++.-.....+...
T Consensus       174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH------STIIYE~p~~~~pLlR  247 (364)
T KOG0290|consen  174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH------STIIYEDPSPSTPLLR  247 (364)
T ss_pred             eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc------ceEEecCCCCCCccee
Confidence            999999998733   3446689999999999997788999999999999999998743      1222222232567889


Q ss_pred             EEecCCCCcEEEEEeCCC-cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          266 ISYNPLVPNLLATGSTDK-MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       266 i~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      ++|++..++++++-..|. .|.|.|++.... .+..+.+|.+.|+.++|.|.....++++|.|..+.+||+..-
T Consensus       248 LswnkqDpnymATf~~dS~~V~iLDiR~P~t-pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  248 LSWNKQDPNYMATFAMDSNKVVILDIRVPCT-PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             eccCcCCchHHhhhhcCCceEEEEEecCCCc-ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence            999999889999877654 599999998753 677899999999999999987778999999999999999753

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=7e-22  Score=164.00  Aligned_cols=303  Identities=18%  Similarity=0.241  Sum_probs=215.0

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      |...|.|..|+.|+.++     .+.+|+..++.  .   .........+.|++|.|     .++-..||++-... +.|-
T Consensus       406 iSvdp~G~wlasGsdDG-----tvriWEi~TgR--c---vr~~~~d~~I~~vaw~P-----~~~~~vLAvA~~~~-~~iv  469 (733)
T KOG0650|consen  406 ISVDPSGEWLASGSDDG-----TVRIWEIATGR--C---VRTVQFDSEIRSVAWNP-----LSDLCVLAVAVGEC-VLIV  469 (733)
T ss_pred             EEecCCcceeeecCCCC-----cEEEEEeecce--E---EEEEeecceeEEEEecC-----CCCceeEEEEecCc-eEEe
Confidence            45789999999997776     66666666541  1   22334555667999955     24455677666554 5555


Q ss_pred             EcccccCcC---ceeecCCcccc------cccccccC-CceeccccccCCCcccEEEEecCCCCCcEEEEEEcC---CeE
Q 018293           81 DLDVIDEVQ---PHVILGGIDEE------KKKKKSKK-GKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD---KQV  147 (358)
Q Consensus        81 ~~~~~~~~~---~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~v  147 (358)
                      +-.-+..+.   ....+....+.      ...|.... .....-+.....|...|..+.|+.. +.+|++...+   ..|
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-GDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-GDYLATVMPDSGNKSV  548 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-CceEEEeccCCCcceE
Confidence            543332111   11111111111      11222111 1111113344568999999999999 5688887664   469


Q ss_pred             EEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEE
Q 018293          148 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS  227 (358)
Q Consensus       148 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  227 (358)
                      .|+++...+...-|+...+.|.++.|+|.. .+|++++ ...|++||+...............|..++.+|.|. -+++|
T Consensus       549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD-nli~g  625 (733)
T KOG0650|consen  549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD-NLILG  625 (733)
T ss_pred             EEEecccccccCchhhcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC-eEEEe
Confidence            999998877766776667889999999998 5555555 56899999998777666667777899999999655 68888


Q ss_pred             ecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecC-------CCCceeeEe
Q 018293          228 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-------NNQPSCIAS  300 (358)
Q Consensus       228 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~-------~~~~~~~~~  300 (358)
                      +.|+.+..||+.-.        .++...+..|...+++++|++.- .++++|+.||++.||.-.       +.....+..
T Consensus       626 s~d~k~~WfDldls--------skPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~  696 (733)
T KOG0650|consen  626 SYDKKMCWFDLDLS--------SKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR  696 (733)
T ss_pred             cCCCeeEEEEcccC--------cchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence            89999999999876        47788889999999999999977 799999999999998532       233456677


Q ss_pred             cCCCCce----eEEEEEcCCCCeEEEEEccCCeEEEE
Q 018293          301 RNPKAGA----VFSVAFSEDSPFVLAIGGSKGKLEIW  333 (358)
Q Consensus       301 ~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~vw  333 (358)
                      +.+|...    |..+.|+|...+ |.+++.||+|++|
T Consensus       697 L~gH~~~~~~gVLd~~wHP~qpW-LfsAGAd~tirlf  732 (733)
T KOG0650|consen  697 LRGHEKTNDLGVLDTIWHPRQPW-LFSAGADGTIRLF  732 (733)
T ss_pred             ccCceeecccceEeecccCCCce-EEecCCCceEEee
Confidence            7888655    889999999996 7788999999998

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=5.6e-22  Score=159.61  Aligned_cols=244  Identities=13%  Similarity=0.181  Sum_probs=191.1

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      ++.|+|...+|++++.||.++||.++...                         ...+..+.-...+|.+..|.|+|...
T Consensus       218 sv~FHp~~plllvaG~d~~lrifqvDGk~-------------------------N~~lqS~~l~~fPi~~a~f~p~G~~~  272 (514)
T KOG2055|consen  218 SVQFHPTAPLLLVAGLDGTLRIFQVDGKV-------------------------NPKLQSIHLEKFPIQKAEFAPNGHSV  272 (514)
T ss_pred             EEEecCCCceEEEecCCCcEEEEEecCcc-------------------------ChhheeeeeccCccceeeecCCCceE
Confidence            34569999999999999999999997422                         22233333356789999999997669


Q ss_pred             EEEEEcCCeEEEEECCCCcee--eeecccc-cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeE
Q 018293          138 LASASADKQVKIWDVAAGKCN--LTLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  214 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~--~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  214 (358)
                      +++++....+..||+++.+..  ....++. ..+.....++++ ++++..+..|.|.+....+++.+. ....++.+..+
T Consensus       273 i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~-s~KieG~v~~~  350 (514)
T KOG2055|consen  273 IFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELIT-SFKIEGVVSDF  350 (514)
T ss_pred             EEecccceEEEEeeccccccccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhh-eeeeccEEeeE
Confidence            999999999999999988643  2333333 356677889999 899999999999999998888766 66788999999


Q ss_pred             EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecC-CceeEEEecCCCCcEEEEEeCCCcEEEEecCC-
Q 018293          215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSN-  292 (358)
Q Consensus       215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~-  292 (358)
                      +|+.++ ..+++++.+|.|.+||++..         .+++.+.... -.-++++.++++ .+||+|+..|.|.|||..+ 
T Consensus       351 ~fsSds-k~l~~~~~~GeV~v~nl~~~---------~~~~rf~D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~  419 (514)
T KOG2055|consen  351 TFSSDS-KELLASGGTGEVYVWNLRQN---------SCLHRFVDDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSC  419 (514)
T ss_pred             EEecCC-cEEEEEcCCceEEEEecCCc---------ceEEEEeecCccceeeeeecCCC-ceEEeccCcceEEEeccchh
Confidence            999865 57888888999999999986         5555554321 123677888888 8999999999999999654 


Q ss_pred             ---CCceeeEecCCCCceeEEEEEcCCCCeEEEEEcc--CCeEEEEEccCCCc
Q 018293          293 ---NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDAG  340 (358)
Q Consensus       293 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~  340 (358)
                         ..|.++..+..-...|++++|+++.+ +||.++.  +..+++-.+.+...
T Consensus       420 ~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TV  471 (514)
T KOG2055|consen  420 FASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTV  471 (514)
T ss_pred             hccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccceee
Confidence               34556777777778899999999999 6877764  56788888876543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=2e-22  Score=166.12  Aligned_cols=258  Identities=17%  Similarity=0.214  Sum_probs=190.9

Q ss_pred             ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      ..|++....|++++.||+|.+|+++...                   ........+...+.+|.++|.|+++.++ +..+
T Consensus       300 l~~~~sep~lit~sed~~lk~WnLqk~~-------------------~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~  359 (577)
T KOG0642|consen  300 LAFHPSEPVLITASEDGTLKLWNLQKAK-------------------KSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHC  359 (577)
T ss_pred             hhcCCCCCeEEEeccccchhhhhhcccC-------------------CccccceeeeEEEecccCceEEEEecCC-ceEE
Confidence            4468888999999999999999994310                   1223556777889999999999999999 6799


Q ss_pred             EEEEcCCeEEEEECCCC----------ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-ee
Q 018293          139 ASASADKQVKIWDVAAG----------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AV  207 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~  207 (358)
                      ++|+.||+|+.|++-..          .....+.+|.+.++.+++++.. ..|++++.||+++.|+........... ..
T Consensus       360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~~~f~~~~e  438 (577)
T KOG0642|consen  360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESPCTFGEPKE  438 (577)
T ss_pred             EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCccccCCccc
Confidence            99999999999965411          2345678999999999999988 779999999999999987766622111 12


Q ss_pred             cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe-------ecCCceeEEEecCCCCcEEEEEe
Q 018293          208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-------AHDKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~~l~~~~  280 (358)
                      .+....+.+-.......++...-+.--++++...         .....+.       .-...+..+.++|.. .+.+++.
T Consensus       439 ~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~---------s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~h  508 (577)
T KOG0642|consen  439 HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV---------SDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAH  508 (577)
T ss_pred             cCCcceEeeccchhHhhhhhcccccccchhhhhh---------hheeeccccCCCcccccCccceEEecCCC-CeeEecc
Confidence            2334555554422223333333333334444433         1111111       112457888999988 7999999


Q ss_pred             CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcC
Q 018293          281 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  350 (358)
Q Consensus       281 ~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  350 (358)
                      .|+.|+++|..+++  .+.....|...++++++.|+|.+ |++++.|+.+++|.+....++.....++..
T Consensus       509 ed~~Ir~~dn~~~~--~l~s~~a~~~svtslai~~ng~~-l~s~s~d~sv~l~kld~k~~~~es~~~r~~  575 (577)
T KOG0642|consen  509 EDRSIRFFDNKTGK--ILHSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSVRLWKLDVKTCVLESTAHRKK  575 (577)
T ss_pred             cCCceecccccccc--cchheeeccceecceeecCCCce-EEeecCCceeehhhccchheeecccccccc
Confidence            99999999999998  46677788999999999999996 889999999999999888877766666544

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.89  E-value=2.8e-21  Score=153.27  Aligned_cols=256  Identities=19%  Similarity=0.275  Sum_probs=179.5

Q ss_pred             cCCCc-eEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           62 REKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        62 s~~~~-~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      .+++. .||||+.|..|++|.++..+....                  .........+..|..+|+++.|+|+ +.+||+
T Consensus        22 q~n~~~~laT~G~D~~iriW~v~r~~~~~~------------------~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLAS   82 (434)
T KOG1009|consen   22 QKNSLNKLATAGGDKDIRIWKVNRSEPGGG------------------DMKVEYLSSLSRHTRAVNVVRFSPD-GELLAS   82 (434)
T ss_pred             ccCcccceecccCccceeeeeeeecCCCCC------------------ceeEEEeecccCCcceeEEEEEcCC-cCeeee
Confidence            45544 999999999999999986544321                  1234455678889999999999999 679999


Q ss_pred             EEcCCeEEEEECC--------C--------CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce
Q 018293          141 ASADKQVKIWDVA--------A--------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  204 (358)
Q Consensus       141 ~~~dg~v~iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  204 (358)
                      |+.+|.|.+|-..        +        ......+.+|...|..++|+|++ .++++++.|..+++||+..+......
T Consensus        83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~  161 (434)
T KOG1009|consen   83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAIL  161 (434)
T ss_pred             cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeec
Confidence            9999999999765        2        22345667899999999999999 89999999999999999999888877


Q ss_pred             eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCC---------------------------------------
Q 018293          205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP---------------------------------------  245 (358)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~---------------------------------------  245 (358)
                      ..|...+..++|.|- .+++++-+.|...+.+.+.......                                       
T Consensus       162 ~dh~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP  240 (434)
T KOG1009|consen  162 DDHEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP  240 (434)
T ss_pred             cccccccceeecchh-hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC
Confidence            888888888888884 3456555555544444333211000                                       


Q ss_pred             ---------------------------CCCCCCccEEEeecCCceeEEEecCC-----------------CCcEEEEEeC
Q 018293          246 ---------------------------DSTSQQSSFTLHAHDKAVCTISYNPL-----------------VPNLLATGST  281 (358)
Q Consensus       246 ---------------------------~~~~~~~~~~~~~~~~~i~~i~~~~~-----------------~~~~l~~~~~  281 (358)
                                                 .....++...+.....+...+.++|-                 ....++.++ 
T Consensus       241 dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-  319 (434)
T KOG1009|consen  241 DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-  319 (434)
T ss_pred             CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-
Confidence                                       00001122222222333444444431                 102344444 


Q ss_pred             CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          282 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       282 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      ...|++||.++..|.... ..-|-..|+.++|+++|.. ++..+.||...+-.++..+.-
T Consensus       320 ~~svyvydtq~~~P~~~v-~nihy~~iTDiaws~dg~~-l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  320 KNSVYVYDTQTLEPLAVV-DNIHYSAITDIAWSDDGSV-LLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             cceEEEeccccccceEEE-eeeeeeeecceeecCCCcE-EEEeccCCceEEEEEcchhcc
Confidence            567999999988875543 3457788999999999995 777899998888777765543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=1.1e-20  Score=159.32  Aligned_cols=286  Identities=19%  Similarity=0.215  Sum_probs=211.9

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCC----CCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDG----GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI   77 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i   77 (358)
                      .++|+++.+++-+..+     ..+.|...+.    .++-+-.|-+ .    +..+.|       +|.|++|++.+.|-+-
T Consensus       323 lw~~n~~~ii~~g~~G-----g~hlWkt~d~~~w~~~~~iSGH~~-~----V~dv~W-------~psGeflLsvs~DQTT  385 (764)
T KOG1063|consen  323 LWSPNSNVIIAHGRTG-----GFHLWKTKDKTFWTQEPVISGHVD-G----VKDVDW-------DPSGEFLLSVSLDQTT  385 (764)
T ss_pred             EEcCCCCEEEEecccC-----cEEEEeccCccceeeccccccccc-c----ceeeee-------cCCCCEEEEeccccce
Confidence            4789999998887776     6677774332    1112222222 1    225666       8999999999999999


Q ss_pred             EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC---
Q 018293           78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA---  154 (358)
Q Consensus        78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~---  154 (358)
                      ||+---..+                       ........-+-|...++|++|-+. ...+++|.....+|+|+...   
T Consensus       386 RlFa~wg~q-----------------------~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv  441 (764)
T KOG1063|consen  386 RLFARWGRQ-----------------------QEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFV  441 (764)
T ss_pred             eeecccccc-----------------------cceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHH
Confidence            998654111                       112223334458889999999886 56889999999999997530   


Q ss_pred             ----------------------------------------Cce---------------------------------eeee
Q 018293          155 ----------------------------------------GKC---------------------------------NLTL  161 (358)
Q Consensus       155 ----------------------------------------~~~---------------------------------~~~~  161 (358)
                                                              |..                                 ++.+
T Consensus       442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL  521 (764)
T KOG1063|consen  442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL  521 (764)
T ss_pred             HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence                                                    000                                 0023


Q ss_pred             cccccceeeEEEcCCCCcEEEEEeCC-----CcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEE
Q 018293          162 EHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF  236 (358)
Q Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~  236 (358)
                      .+|...|++++.+|++ +++++++..     ..|++|+..+-........|.-.|+.++|+|+ +.+|++.+.|.++.+|
T Consensus       522 YGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpd-g~~LLsvsRDRt~sl~  599 (764)
T KOG1063|consen  522 YGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPD-GRYLLSVSRDRTVSLY  599 (764)
T ss_pred             ccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCC-CcEEEEeecCceEEee
Confidence            3688899999999999 899998764     35899999887777777889999999999995 5689999999999999


Q ss_pred             EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC--CceeeEecCCCCceeEEEEEc
Q 018293          237 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN--QPSCIASRNPKAGAVFSVAFS  314 (358)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~v~~~~~~  314 (358)
                      .........     ........|..-|.+..|+|++ .+++|++.|++|++|.....  +.........+...|+.+++.
T Consensus       600 ~~~~~~~~e-----~~fa~~k~HtRIIWdcsW~pde-~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~  673 (764)
T KOG1063|consen  600 EVQEDIKDE-----FRFACLKAHTRIIWDCSWSPDE-KYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL  673 (764)
T ss_pred             eeecccchh-----hhhccccccceEEEEcccCccc-ceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence            986542211     1233377899999999999998 88999999999999999887  433333445677889999998


Q ss_pred             CC----CCeEEEEEccCCeEEEEEcc
Q 018293          315 ED----SPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       315 ~~----~~~~l~~~~~dg~i~vw~~~  336 (358)
                      |-    ..++++.|-..|.|.+|...
T Consensus       674 ~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  674 PVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             ccccccccceEEEEecccEEEEEecc
Confidence            73    33478889999999999966

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=7.1e-21  Score=160.56  Aligned_cols=288  Identities=13%  Similarity=0.200  Sum_probs=210.1

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeece--eecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH--IIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI   79 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v   79 (358)
                      ..+|.+..|++++.+.     .+-+|...+..  -++...-  ..+...  ...+.  ..-|+|+++.+++-+..|-.++
T Consensus       274 ~W~p~~~~LLSASaDk-----smiiW~pd~~t--GiWv~~vRlGe~gg~--a~GF~--g~lw~~n~~~ii~~g~~Gg~hl  342 (764)
T KOG1063|consen  274 WWHPEGLDLLSASADK-----SMIIWKPDENT--GIWVDVVRLGEVGGS--AGGFW--GGLWSPNSNVIIAHGRTGGFHL  342 (764)
T ss_pred             EEccchhhheecccCc-----ceEEEecCCcc--ceEEEEEEeeccccc--cccee--eEEEcCCCCEEEEecccCcEEE
Confidence            4678888888887876     66677765420  1221110  001100  11111  2235899999999999999999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC----
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG----  155 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----  155 (358)
                      |.....                        ..........||.+.|.+++|.|. +.+|++.+.|-+-|++-.-..    
T Consensus       343 Wkt~d~------------------------~~w~~~~~iSGH~~~V~dv~W~ps-GeflLsvs~DQTTRlFa~wg~q~~w  397 (764)
T KOG1063|consen  343 WKTKDK------------------------TFWTQEPVISGHVDGVKDVDWDPS-GEFLLSVSLDQTTRLFARWGRQQEW  397 (764)
T ss_pred             EeccCc------------------------cceeeccccccccccceeeeecCC-CCEEEEeccccceeeecccccccce
Confidence            993211                        123333345689999999999999 669999999999999875411    


Q ss_pred             ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc--------------------------------------
Q 018293          156 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--------------------------------------  197 (358)
Q Consensus       156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------------------------------------  197 (358)
                      ..+.+-+-|...++|++|-+.. ..+++|.....+++|+.-.                                      
T Consensus       398 HEiaRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~  476 (764)
T KOG1063|consen  398 HEIARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFP  476 (764)
T ss_pred             eeecccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcc
Confidence            2233445688889999998864 6789999888899987420                                      


Q ss_pred             -----CCC---------------------------------ccceeeecCCeeeEEEcCCCCCeEEEEecCC-----eEE
Q 018293          198 -----STH---------------------------------SGFKWAVAADVESLAWDPHAEHSFVVSLEDG-----TIK  234 (358)
Q Consensus       198 -----~~~---------------------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg-----~i~  234 (358)
                           +..                                 ...+.+|...|.+++.+|+ ++++++++...     .|+
T Consensus       477 ~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~-gnliASaCKS~~~ehAvI~  555 (764)
T KOG1063|consen  477 GETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT-GNLIASACKSSLKEHAVIR  555 (764)
T ss_pred             cccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC-CCEEeehhhhCCccceEEE
Confidence                 000                                 0002345567999999994 56888887543     589


Q ss_pred             EEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce--eeEecCCCCceeEEEE
Q 018293          235 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS--CIASRNPKAGAVFSVA  312 (358)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~  312 (358)
                      +|+..+.         .....+..|.-.|+.++|+||+ ++|++.+.|.++.+|........  .......|..-|.++.
T Consensus       556 lw~t~~W---------~~~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcs  625 (764)
T KOG1063|consen  556 LWNTANW---------LQVQELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCS  625 (764)
T ss_pred             EEeccch---------hhhheecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcc
Confidence            9999887         6677899999999999999999 99999999999999998654321  1223678999999999


Q ss_pred             EcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          313 FSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       313 ~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      |+|++.+ ++|++.|.+|++|.....
T Consensus       626 W~pde~~-FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  626 WSPDEKY-FATASRDKKVKVWEEPDL  650 (764)
T ss_pred             cCcccce-eEEecCCceEEEEeccCc
Confidence            9999997 999999999999999887

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=7.8e-22  Score=162.29  Aligned_cols=234  Identities=23%  Similarity=0.317  Sum_probs=176.2

Q ss_pred             eccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee-cccccceeeEEEcCC-CCcEEEEEeCCCc
Q 018293          112 SSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHH-SPQILLSGSFDRS  189 (358)
Q Consensus       112 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~l~~~~~dg~  189 (358)
                      ......+.||++.|+|++|+.+ +.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-|. ++.++++|..|..
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             cchhhhhccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence            3445578899999999999999 679999999999999999988888877 589999999999984 3468889999999


Q ss_pred             EEEEEcccCC----------CccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCC-CCCccEEEee
Q 018293          190 VVMKDARIST----------HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST-SQQSSFTLHA  258 (358)
Q Consensus       190 i~i~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~  258 (358)
                      |+++|+...+          .......|...|..++-.|++++.+.++++||+++-||++......... ....+..+..
T Consensus       119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~  198 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP  198 (758)
T ss_pred             EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence            9999998532          2222335677888999999888999999999999999999864322111 1111222222


Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc----------------eeeEec-CCCC-----------ceeEE
Q 018293          259 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----------------SCIASR-NPKA-----------GAVFS  310 (358)
Q Consensus       259 ~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------------~~~~~~-~~~~-----------~~v~~  310 (358)
                      .--...++.++|..+.+|++|+.|-..++||.+...+                .++..+ .+|.           ..++-
T Consensus       199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~  278 (758)
T KOG1310|consen  199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY  278 (758)
T ss_pred             hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence            3345688999999989999999999999999543110                012211 1221           12567


Q ss_pred             EEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293          311 VAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       311 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                      +.|+|+|..+|++-+.+ .|+++|+..++.....+..
T Consensus       279 vtfnpNGtElLvs~~gE-hVYlfdvn~~~~~~~y~~~  314 (758)
T KOG1310|consen  279 VTFNPNGTELLVSWGGE-HVYLFDVNEDKSPTPYFLP  314 (758)
T ss_pred             EEECCCCcEEEEeeCCe-EEEEEeecCCCCceeecCc
Confidence            89999999888766654 7999999998888776666

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.89  E-value=8.3e-21  Score=144.26  Aligned_cols=238  Identities=23%  Similarity=0.336  Sum_probs=178.7

Q ss_pred             CceEEecC----CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           65 GNFMAVGS----MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        65 ~~~l~~g~----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      .-.+++|.    .|+.|.+.+++.....-                        ....+..|.+.|..|+-+|.+..+|++
T Consensus        26 ~icFlvgTnslK~dNqVhll~~d~e~s~l------------------------~skvf~h~agEvw~las~P~d~~ilaT   81 (370)
T KOG1007|consen   26 HICFLVGTNSLKEDNQVHLLRLDSEGSEL------------------------LSKVFFHHAGEVWDLASSPFDQRILAT   81 (370)
T ss_pred             ceEEEEeccccCCcceeEEEEecCccchh------------------------hhhhhhcCCcceehhhcCCCCCceEEE
Confidence            33455554    36788888876533221                        223455688999999999997888888


Q ss_pred             EEcC-------CeEEEEECCCC---------ceeeeec-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc
Q 018293          141 ASAD-------KQVKIWDVAAG---------KCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  203 (358)
Q Consensus       141 ~~~d-------g~v~iwd~~~~---------~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  203 (358)
                      +..+       ..+.||.+...         +++..+. .+-+.|.|+.|.|++ ..+++.. |..|.+|++.....+..
T Consensus        82 ~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~va  159 (370)
T KOG1007|consen   82 VYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKIVA  159 (370)
T ss_pred             EEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcchhe
Confidence            7653       24779988532         2333443 344689999999988 5566555 89999999987765321


Q ss_pred             ------eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEE
Q 018293          204 ------KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA  277 (358)
Q Consensus       204 ------~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~  277 (358)
                            ...+....++-+|+|......+....|+++..||+|+.+        +....-.+|...+..+.|+|+...+|+
T Consensus       160 ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~--------~~~sI~dAHgq~vrdlDfNpnkq~~lv  231 (370)
T KOG1007|consen  160 EVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMK--------KNNSIEDAHGQRVRDLDFNPNKQHILV  231 (370)
T ss_pred             eecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchh--------hhcchhhhhcceeeeccCCCCceEEEE
Confidence                  112455678889999433344555579999999999872        333344678888999999999888999


Q ss_pred             EEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          278 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       278 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      +|+.||.|++||.+..+. +++++.+|...|+++.|+|....++.+|+.|..|.+|...+
T Consensus       232 t~gDdgyvriWD~R~tk~-pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  232 TCGDDGYVRIWDTRKTKF-PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             EcCCCccEEEEeccCCCc-cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence            999999999999998764 78899999999999999998877999999999999998764

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=1.4e-21  Score=162.23  Aligned_cols=231  Identities=19%  Similarity=0.283  Sum_probs=178.9

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      +|.|.+||+|+.||+|+||.+.++.++....                            ..+.|.|++|+|.+..-+++.
T Consensus       409 dp~G~wlasGsdDGtvriWEi~TgRcvr~~~----------------------------~d~~I~~vaw~P~~~~~vLAv  460 (733)
T KOG0650|consen  409 DPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----------------------------FDSEIRSVAWNPLSDLCVLAV  460 (733)
T ss_pred             cCCcceeeecCCCCcEEEEEeecceEEEEEe----------------------------ecceeEEEEecCCCCceeEEE
Confidence            7889999999999999999999988877543                            345899999999865555555


Q ss_pred             EcCCeEEEEECCCCc-------------------------------------eeeeecccccceeeEEEcCCCCcEEEEE
Q 018293          142 SADKQVKIWDVAAGK-------------------------------------CNLTLEHHTDKVQAVAWNHHSPQILLSG  184 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~-------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~  184 (358)
                      .....+.|-+..-|.                                     -++..-.|...|..+.|+..| .+|++.
T Consensus       461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV  539 (733)
T KOG0650|consen  461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATV  539 (733)
T ss_pred             EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEe
Confidence            554445555432110                                     011122377889999999999 788887


Q ss_pred             eCC---CcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCC
Q 018293          185 SFD---RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK  261 (358)
Q Consensus       185 ~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  261 (358)
                      ..+   ..|.|+++........+....+.+.++.|+|... +|++++ ...|++||+..+         ..+..+.....
T Consensus       540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kq---------elvKkL~tg~k  608 (733)
T KOG0650|consen  540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQ---------ELVKKLLTGSK  608 (733)
T ss_pred             ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHH---------HHHHHHhcCCe
Confidence            653   4689999987766665566778899999999655 555554 467999999876         66666766777


Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          262 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       262 ~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      .|.+++++|.| .-|+.|+.|+.+..||+.-... ....+..|...+++++|++.-. ++++|+.||++.|+.-
T Consensus       609 wiS~msihp~G-Dnli~gs~d~k~~WfDldlssk-Pyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  609 WISSMSIHPNG-DNLILGSYDKKMCWFDLDLSSK-PYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHG  679 (733)
T ss_pred             eeeeeeecCCC-CeEEEecCCCeeEEEEcccCcc-hhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEee
Confidence            89999999988 6788899999999999986642 4566778999999999999998 7999999999998753

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.88  E-value=1.2e-20  Score=149.33  Aligned_cols=214  Identities=21%  Similarity=0.315  Sum_probs=164.6

Q ss_pred             CCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccE
Q 018293           46 PAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV  125 (358)
Q Consensus        46 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  125 (358)
                      ....+.+.|.|+      +...+|+|+.|.+|.||++........                    ...++..+.+|...|
T Consensus        81 t~~vLDi~w~Pf------nD~vIASgSeD~~v~vW~IPe~~l~~~--------------------ltepvv~L~gH~rrV  134 (472)
T KOG0303|consen   81 TAPVLDIDWCPF------NDCVIASGSEDTKVMVWQIPENGLTRD--------------------LTEPVVELYGHQRRV  134 (472)
T ss_pred             cccccccccCcc------CCceeecCCCCceEEEEECCCcccccC--------------------cccceEEEeecceeE
Confidence            445568888664      677899999999999999975443332                    235566788999999


Q ss_pred             EEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee
Q 018293          126 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  205 (358)
Q Consensus       126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  205 (358)
                      .-++|+|...+.|++++.|.+|.+||+.+++.+.++. |.+.|+++.|+.+| .++++.+.|..|++||.++++......
T Consensus       135 g~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~  212 (472)
T KOG0303|consen  135 GLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGV  212 (472)
T ss_pred             EEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeecc
Confidence            9999999988999999999999999999999988888 99999999999999 899999999999999999998876554


Q ss_pred             eecC-CeeeEEEcCCCCCeEEEEe---cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC
Q 018293          206 AVAA-DVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  281 (358)
Q Consensus       206 ~~~~-~i~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~  281 (358)
                      .|.+ ....+.|-.++. ++.+|.   .+..+.+||..+...      ......+. ..+.|.---+.|+..-+.++|-.
T Consensus       213 ~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~e------P~~~~elD-tSnGvl~PFyD~dt~ivYl~GKG  284 (472)
T KOG0303|consen  213 AHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEE------PIALQELD-TSNGVLLPFYDPDTSIVYLCGKG  284 (472)
T ss_pred             cccCCCcceeEEeccCc-eeeeccccccccceeccCcccccC------cceeEEec-cCCceEEeeecCCCCEEEEEecC
Confidence            5543 355566666444 555553   467899999887632      11122222 24456666678877344456667


Q ss_pred             CCcEEEEecCCCCc
Q 018293          282 DKMVKLWDLSNNQP  295 (358)
Q Consensus       282 dg~i~i~d~~~~~~  295 (358)
                      |+.|+-|.+....+
T Consensus       285 D~~IRYyEit~d~P  298 (472)
T KOG0303|consen  285 DSSIRYFEITNEPP  298 (472)
T ss_pred             CcceEEEEecCCCc
Confidence            99999999987764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=2.5e-20  Score=164.40  Aligned_cols=302  Identities=18%  Similarity=0.278  Sum_probs=200.1

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      +.|+|=.+.++++...+     .+.+|+...+...+-+.. ....+..+..+..++     ..|..++++|+.||.|+||
T Consensus      1070 ~~~hpf~p~i~~ad~r~-----~i~vwd~e~~~~l~~F~n-~~~~~t~Vs~l~liN-----e~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRE-----RIRVWDWEKGRLLNGFDN-GAFPDTRVSDLELIN-----EQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred             eeecCCCceeEEcCCcc-----eEEEEecccCceeccccC-CCCCCCccceeeeec-----ccchhheeeeccCceEEEe
Confidence            45788888998884332     556666555432222222 223344455666665     3677899999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      +-.......+..+.+ +              ..+.-.+.+-.+.=.-++|.-..+.++ +++.-..|+|||....++...
T Consensus      1139 k~y~~~~~~~eLVTa-w--------------~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTA-W--------------SSLSDQLPGARGTGLVVDWQQQSGHLL-VTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred             cccccccCCceeEEe-e--------------ccccccCccCCCCCeeeehhhhCCeEE-ecCCeeEEEEEecccceeEee
Confidence            854221111110000 0              000001111122225567887756455 444578999999998877776


Q ss_pred             ec-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC---ccceeeecCC--eeeEEEcCCCCCeEEEEecCCeEE
Q 018293          161 LE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SGFKWAVAAD--VESLAWDPHAEHSFVVSLEDGTIK  234 (358)
Q Consensus       161 ~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~dg~i~  234 (358)
                      +. +....++++.-+-..++++++|..||.|++||.+....   +.....|...  |..+.+.+.+-..+++|+.+|.|+
T Consensus      1203 iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQ 1282 (1387)
T ss_pred             cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEE
Confidence            64 33456777766554458999999999999999987644   2334455555  999999997766799999999999


Q ss_pred             EEEcccCCCCCCCCCCCccEEEeecC--C-ceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec----CCCCce
Q 018293          235 GFDIRTAKSDPDSTSQQSSFTLHAHD--K-AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR----NPKAGA  307 (358)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~~~~~~~--~-~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~  307 (358)
                      +||+|....       .....+..|.  + ..+++..++.. ..+++|+. +.|+||++...+.......    ....+.
T Consensus      1283 ~~DlR~~~~-------e~~~~iv~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs 1353 (1387)
T KOG1517|consen 1283 LLDLRMSSK-------ETFLTIVAHWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGS 1353 (1387)
T ss_pred             EEecccCcc-------cccceeeeccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhhhcccccCcccccCcCCC
Confidence            999998521       2223333332  3 58999999987 78999987 9999999977653222211    123456


Q ss_pred             eEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          308 VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       308 v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      +.+++|+|-.- ++|+|+.|.+|.||...+..
T Consensus      1354 ~scL~FHP~~~-llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1354 VSCLAFHPHRL-LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cceeeecchhH-hhhhccCCceEEEeecCCcC
Confidence            89999999987 68999999999999887654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=6.2e-21  Score=148.13  Aligned_cols=198  Identities=18%  Similarity=0.264  Sum_probs=157.0

Q ss_pred             cEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCC-CCcEEEEEeCCCcEEEEEcccCCCccce-eeec--CCe
Q 018293          136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH-SPQILLSGSFDRSVVMKDARISTHSGFK-WAVA--ADV  211 (358)
Q Consensus       136 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~--~~i  211 (358)
                      ..+|++...|.|++||..+++.+..+++++..+..++|... ++..+.+++.||+|++||+|........ +...  .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            47889999999999999999999999999999999999774 6688999999999999999987654422 2222  356


Q ss_pred             eeEEEcCCCCCeEEEEec----CCeEEEEEcccCCCCCCCCCCCcc-EEEeecCCceeEEEecCCCCcEEEEEeCCCcEE
Q 018293          212 ESLAWDPHAEHSFVVSLE----DGTIKGFDIRTAKSDPDSTSQQSS-FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK  286 (358)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~  286 (358)
                      .+++... ..+++++|+.    +-.|.+||+|..+        +++ .-...|...|++++|+|..+++|++|+.||.|.
T Consensus       121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~q--------q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn  191 (376)
T KOG1188|consen  121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQ--------QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN  191 (376)
T ss_pred             eEeeccC-cCCeEEeccccccCceEEEEEEecccc--------chhhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence            6666654 4557888753    6789999999873        323 334679999999999999999999999999999


Q ss_pred             EEecCCCCc-eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          287 LWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       287 i~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      +||+..... ..+...-.|...|.++.|+.++-..+.+-+..++..+|+++.+.+..
T Consensus       192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~  248 (376)
T KOG1188|consen  192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET  248 (376)
T ss_pred             eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence            999976431 12333445677899999999882236678889999999999887543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.8e-20  Score=138.09  Aligned_cols=245  Identities=17%  Similarity=0.230  Sum_probs=174.0

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      +++|.+++|++|+.+|.|.+..+.+...-..                 .......+...++|.++|+.++|..+   +|+
T Consensus        17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa-----------------~~~gk~~iv~eqahdgpiy~~~f~d~---~Ll   76 (325)
T KOG0649|consen   17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-----------------EPPGKLKIVPEQAHDGPIYYLAFHDD---FLL   76 (325)
T ss_pred             hhCCcceEEEEecCCCeEEEEEehhhhcccc-----------------CCCCCcceeeccccCCCeeeeeeehh---hee
Confidence            4589999999999999999999875332211                 11222333445789999999999943   676


Q ss_pred             EEEcCCeEEEEECCCCce------eeee--ccc-----ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee
Q 018293          140 SASADKQVKIWDVAAGKC------NLTL--EHH-----TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA  206 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~------~~~~--~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  206 (358)
                      +|+ ||.|+-|..+....      +.+.  ..|     --.|+++-..|.. +-++.++.|+.++-||+++++......+
T Consensus        77 s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~r~~rG  154 (325)
T KOG0649|consen   77 SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQREYRG  154 (325)
T ss_pred             ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEEEEEcC
Confidence            766 49999998754321      1111  112     2368889999988 4455666899999999999999988899


Q ss_pred             ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcEEEEEeCCCcE
Q 018293          207 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMV  285 (358)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i  285 (358)
                      |...+.++.-... ...+++|++||++++||.++++........+....+..| ...|-+++-+.   .+|++|+ ...+
T Consensus       155 HtDYvH~vv~R~~-~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGg-Gp~l  229 (325)
T KOG0649|consen  155 HTDYVHSVVGRNA-NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGG-GPKL  229 (325)
T ss_pred             Ccceeeeeeeccc-CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEecC-CCce
Confidence            9999999988543 347999999999999999998543322222222223333 23466676664   6777766 4679


Q ss_pred             EEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          286 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       286 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      .+|.++..++.+++.+.+|   +..+.|..+   .+++++..+.+.-|.+..
T Consensus       230 slwhLrsse~t~vfpipa~---v~~v~F~~d---~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  230 SLWHLRSSESTCVFPIPAR---VHLVDFVDD---CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             eEEeccCCCceEEEecccc---eeEeeeecc---eEEEeccccceeeeeecc
Confidence            9999999998888877754   777788776   466677777888887753

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.86  E-value=4.8e-18  Score=143.12  Aligned_cols=243  Identities=10%  Similarity=0.094  Sum_probs=151.8

Q ss_pred             cccCCCceEEecC-CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           60 KDREKGNFMAVGS-MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        60 ~~s~~~~~l~~g~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      .++|++++|++++ .++.|.+|+++....+...                        ... ........++|+|++. ++
T Consensus        41 ~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~------------------------~~~-~~~~~p~~i~~~~~g~-~l   94 (330)
T PRK11028         41 VISPDKRHLYVGVRPEFRVLSYRIADDGALTFA------------------------AES-PLPGSPTHISTDHQGR-FL   94 (330)
T ss_pred             EECCCCCEEEEEECCCCcEEEEEECCCCceEEe------------------------eee-cCCCCceEEEECCCCC-EE
Confidence            4589999887664 5789999998621111100                        000 1223467899999954 55


Q ss_pred             EEEE-cCCeEEEEECCC-Cc---eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc------eeee
Q 018293          139 ASAS-ADKQVKIWDVAA-GK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF------KWAV  207 (358)
Q Consensus       139 ~s~~-~dg~v~iwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------~~~~  207 (358)
                      ++++ .++.|.+|++++ +.   .+..+. +.....+++++|++..++++...++.|.+||+.+......      ....
T Consensus        95 ~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~  173 (330)
T PRK11028         95 FSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE  173 (330)
T ss_pred             EEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC
Confidence            5554 589999999964 32   222232 2344677899999944445666779999999976432210      1122


Q ss_pred             cCCeeeEEEcCCCCCeEEEEe-cCCeEEEEEcccCCCCCCCCCCCccEEEeec------CCceeEEEecCCCCcEEEEEe
Q 018293          208 AADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~~l~~~~  280 (358)
                      ......++|+|++. ++++.. .++.|.+||+......     ......+..+      ......+.++|++ ++++++.
T Consensus       174 g~~p~~~~~~pdg~-~lyv~~~~~~~v~v~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~i~~~pdg-~~lyv~~  246 (330)
T PRK11028        174 GAGPRHMVFHPNQQ-YAYCVNELNSSVDVWQLKDPHGE-----IECVQTLDMMPADFSDTRWAADIHITPDG-RHLYACD  246 (330)
T ss_pred             CCCCceEEECCCCC-EEEEEecCCCEEEEEEEeCCCCC-----EEEEEEEecCCCcCCCCccceeEEECCCC-CEEEEec
Confidence            34567899999665 555554 4899999999743110     0122222211      1223468899998 7777764


Q ss_pred             -CCCcEEEEecCCCCc--eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          281 -TDKMVKLWDLSNNQP--SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       281 -~dg~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                       .++.|.+|++.....  ..+..... ......+.++|+|++++++...+++|.+|++..
T Consensus       247 ~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        247 RTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             CCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence             478899999965431  11111111 123457899999998777666789999998853

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.86  E-value=2.5e-20  Score=156.19  Aligned_cols=215  Identities=18%  Similarity=0.304  Sum_probs=158.8

Q ss_pred             CcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEE
Q 018293           47 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL  126 (358)
Q Consensus        47 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  126 (358)
                      ..+..+.|-|+      |..+||+++.||.|++|.+..+.....                    ...+...+..|...|+
T Consensus       628 t~vtDl~WdPF------D~~rLAVa~ddg~i~lWr~~a~gl~e~--------------------~~tPe~~lt~h~eKI~  681 (1012)
T KOG1445|consen  628 TLVTDLHWDPF------DDERLAVATDDGQINLWRLTANGLPEN--------------------EMTPEKILTIHGEKIT  681 (1012)
T ss_pred             ceeeecccCCC------ChHHeeecccCceEEEEEeccCCCCcc--------------------cCCcceeeecccceEE
Confidence            34557888665      678999999999999999987654442                    3444557778999999


Q ss_pred             EEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee
Q 018293          127 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA  206 (358)
Q Consensus       127 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  206 (358)
                      .+.|+|-....|++++.|-+|++||+.+++....+.+|.+.|..++|+|+| +.+++.+.||+|++|+.+..+.......
T Consensus       682 slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~pv~Eg~  760 (1012)
T KOG1445|consen  682 SLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQPVYEGK  760 (1012)
T ss_pred             EEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCC-cceeeeecCceEEEeCCCCCCCccccCC
Confidence            999999878899999999999999999999999999999999999999999 8999999999999999988765432221


Q ss_pred             --ecCCeeeEEEcCCCCCeEEEEe---cCCeEEEEEcccCCCCCCCCCCCccEEEeecC-CceeEEEecCCCCcEEEEEe
Q 018293          207 --VAADVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       207 --~~~~i~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~  280 (358)
                        ....--.+.|.-++..++++|-   ....|.+||..+...       .++....-.. ..+.--.+.+|..-++++|-
T Consensus       761 gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-------~pl~t~~lDvaps~LvP~YD~Ds~~lfltGK  833 (1012)
T KOG1445|consen  761 GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-------RPLYTQVLDVAPSPLVPHYDYDSNVLFLTGK  833 (1012)
T ss_pred             CCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-------CcceeeeecccCccccccccCCCceEEEecC
Confidence              1233445777776654444442   235688898876532       2222221111 11122234556656888998


Q ss_pred             CCCcEEEEecCCCCc
Q 018293          281 TDKMVKLWDLSNNQP  295 (358)
Q Consensus       281 ~dg~i~i~d~~~~~~  295 (358)
                      .|..|.+|.+-...+
T Consensus       834 GD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  834 GDRFVNMYEVIYESP  848 (1012)
T ss_pred             CCceEEEEEecCCCc
Confidence            999999999876654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=5.8e-20  Score=142.06  Aligned_cols=217  Identities=17%  Similarity=0.295  Sum_probs=166.7

Q ss_pred             CCcccEEEEecCCC---CCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 018293          120 SHTDSVLGLAWNKE---FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  196 (358)
Q Consensus       120 ~h~~~v~~~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  196 (358)
                      .|......++|+-+   +..++|+|+.-|.|+|.|+.++++...+.+|...|+.+.++|+.++++++++.|..|++|+++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            37777888888643   345899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccee---eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCC------------C---CC---CCCccE-
Q 018293          197 ISTHSGFKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP------------D---ST---SQQSSF-  254 (358)
Q Consensus       197 ~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~------------~---~~---~~~~~~-  254 (358)
                      +..++....   +|...|.++.|++++. ++++++.|.++++|++...+...            .   .+   ..-+.+ 
T Consensus       167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs  245 (385)
T KOG1034|consen  167 TDVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS  245 (385)
T ss_pred             CCeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence            998876543   5788999999999765 99999999999999998432100            0   00   001111 


Q ss_pred             EEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC-CCc-----------eeeEecCCCCceeEEEEE--cCCCCeE
Q 018293          255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN-NQP-----------SCIASRNPKAGAVFSVAF--SEDSPFV  320 (358)
Q Consensus       255 ~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~-----------~~~~~~~~~~~~v~~~~~--~~~~~~~  320 (358)
                      +...|...|-|+.|-  | +++++-+-++.|..|.... .+.           ....++.-....|+-+.|  .|-++ +
T Consensus       246 t~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~  321 (385)
T KOG1034|consen  246 TTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-M  321 (385)
T ss_pred             ccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-H
Confidence            335678888888888  3 7899988899999998721 110           112233333445665544  55567 6


Q ss_pred             EEEEccCCeEEEEEccCCCcc
Q 018293          321 LAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       321 l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      ||.|...|.|.+||+.+.+..
T Consensus       322 la~gnq~g~v~vwdL~~~ep~  342 (385)
T KOG1034|consen  322 LALGNQSGKVYVWDLDNNEPP  342 (385)
T ss_pred             HhhccCCCcEEEEECCCCCCc
Confidence            999999999999999987774

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.86  E-value=1.6e-18  Score=136.29  Aligned_cols=231  Identities=18%  Similarity=0.232  Sum_probs=170.2

Q ss_pred             ccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           61 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        61 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      |+.+...|..|+.||. ++|+.+..+...                           ........|--+-|+..   ++|.
T Consensus        13 ~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~---------------------------~~~~~~~~IvEmLFSSS---Lvai   61 (391)
T KOG2110|consen   13 FNQDSTLLSVGSKDGY-KIFSCSPFEKCF---------------------------SKDTEGVSIVEMLFSSS---LVAI   61 (391)
T ss_pred             eccceeEEEccCCCce-eEEecCchHHhh---------------------------cccCCCeEEEEeecccc---eeEE
Confidence            4888999999999984 578776433211                           11112334666667754   6666


Q ss_pred             EEcCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee---cCCeeeEE
Q 018293          141 ASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLA  215 (358)
Q Consensus       141 ~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~i~~~~  215 (358)
                      .+.+.  .+++++.+.+..+..+. ...+|.++.++.+.   |+++-++ .|+|||+++.+.+......   ...+.+++
T Consensus        62 V~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~R---LvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS  136 (391)
T KOG2110|consen   62 VSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRKR---LVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALS  136 (391)
T ss_pred             EecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccce---EEEEEcc-cEEEEecccceeehhhhccCCCccceEeec
Confidence            66554  49999999888887776 56789999998753   5555544 3999999998876544333   33455555


Q ss_pred             EcCCCCCeEEE--EecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc-EEEEecCC
Q 018293          216 WDPHAEHSFVV--SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM-VKLWDLSN  292 (358)
Q Consensus       216 ~~~~~~~~~~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~d~~~  292 (358)
                      .++. +.+++.  ....|.|.+||..+.         ++...+..|.+++.+++|+++| .+|||+++.|+ ||||.+.+
T Consensus       137 ~n~~-n~ylAyp~s~t~GdV~l~d~~nl---------~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~  205 (391)
T KOG2110|consen  137 PNNA-NCYLAYPGSTTSGDVVLFDTINL---------QPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPE  205 (391)
T ss_pred             cCCC-CceEEecCCCCCceEEEEEcccc---------eeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCC
Confidence            5542 334554  235689999999987         8888999999999999999999 99999999998 79999999


Q ss_pred             CCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          293 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       293 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      ++....+........|.+++|+|++++ |++.+..++|++|.+....
T Consensus       206 G~kl~eFRRG~~~~~IySL~Fs~ds~~-L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  206 GQKLYEFRRGTYPVSIYSLSFSPDSQF-LAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             ccEeeeeeCCceeeEEEEEEECCCCCe-EEEecCCCeEEEEEecccc
Confidence            985443333334567899999999995 8888889999999997654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.85  E-value=8.3e-20  Score=153.11  Aligned_cols=258  Identities=16%  Similarity=0.239  Sum_probs=187.6

Q ss_pred             ccCCCceEEe--cCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           61 DREKGNFMAV--GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        61 ~s~~~~~l~~--g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      |..+..++|+  .+.-|.|-||+++....+..-                      ..-.+ -....|+.+.|.|-+...|
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDg----------------------v~p~l-~Ngt~vtDl~WdPFD~~rL  643 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDG----------------------VMPGL-FNGTLVTDLHWDPFDDERL  643 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcc----------------------ccccc-ccCceeeecccCCCChHHe
Confidence            4456666664  455789999999854333211                      11111 1446799999999888899


Q ss_pred             EEEEcCCeEEEEECCCC-------ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCe
Q 018293          139 ASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADV  211 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  211 (358)
                      |.++.||.|++|.+..+       ++...+..|...|+++.|+|--...|++++.|.+|++||+++.+....+.+|...|
T Consensus       644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqI  723 (1012)
T KOG1445|consen  644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQI  723 (1012)
T ss_pred             eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCce
Confidence            99999999999998754       34566788999999999999777899999999999999999999888889999999


Q ss_pred             eeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcEEEEEeCCC----cEE
Q 018293          212 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDK----MVK  286 (358)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg----~i~  286 (358)
                      ..++|+|+ ++.+++.+.||+|++|+.++..        ++++.-.+. ...-..|.|.-+| +++++.+.|.    .|.
T Consensus       724 f~~AWSpd-Gr~~AtVcKDg~~rVy~Prs~e--------~pv~Eg~gpvgtRgARi~wacdg-r~viv~Gfdk~SeRQv~  793 (1012)
T KOG1445|consen  724 FGIAWSPD-GRRIATVCKDGTLRVYEPRSRE--------QPVYEGKGPVGTRGARILWACDG-RIVIVVGFDKSSERQVQ  793 (1012)
T ss_pred             eEEEECCC-CcceeeeecCceEEEeCCCCCC--------CccccCCCCccCcceeEEEEecC-cEEEEecccccchhhhh
Confidence            99999995 5589999999999999999873        344433222 1223467788888 6776666554    588


Q ss_pred             EEecCCCC--ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcCCC
Q 018293          287 LWDLSNNQ--PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPK  352 (358)
Q Consensus       287 i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  352 (358)
                      +||.++..  ++....+....+ +.--.+.+|...++++|-.|..|.+|++.......-.+.++..+.
T Consensus       794 ~Y~Aq~l~~~pl~t~~lDvaps-~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~  860 (1012)
T KOG1445|consen  794 MYDAQTLDLRPLYTQVLDVAPS-PLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPV  860 (1012)
T ss_pred             hhhhhhccCCcceeeeecccCc-cccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCC
Confidence            88887643  222222221111 111235567777899999999999999987776655555554443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=6.9e-18  Score=147.82  Aligned_cols=285  Identities=26%  Similarity=0.443  Sum_probs=200.1

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCC-C-CceEeeceeecCCcccceeeecCCccccCCCc-eEEecCC-CCeE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGG-D-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVGSM-EPAI   77 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~-dg~i   77 (358)
                      .+.+.+..++.+..++     .+.+|+..... . ..+...+.    .....+.     .. ++++. +++..+. |+.+
T Consensus        72 ~~~~~~~~~~~~~~d~-----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----~~-~~~~~~~~~~~~~~d~~~  136 (466)
T COG2319          72 AFSPDGELLLSGSSDG-----TIKLWDLDNGEKLIKSLEGLHD----SSVSKLA-----LS-SPDGNSILLASSSLDGTV  136 (466)
T ss_pred             EECCCCcEEEEecCCC-----cEEEEEcCCCceeEEEEeccCC----CceeeEE-----EE-CCCcceEEeccCCCCccE
Confidence            4677888888886555     66677766542 1 11111111    0111111     12 45666 5555444 9999


Q ss_pred             EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc-CCeEEEEECCCCc
Q 018293           78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQVKIWDVAAGK  156 (358)
Q Consensus        78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~  156 (358)
                      .+|+...                          .......+..|...|.+++|+|+ +..+++++. |+.+++|++..+.
T Consensus       137 ~~~~~~~--------------------------~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  189 (466)
T COG2319         137 KLWDLST--------------------------PGKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDLRTGK  189 (466)
T ss_pred             EEEEecC--------------------------CCeEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEcCCCc
Confidence            9999974                          01223345579999999999999 447888875 9999999999988


Q ss_pred             eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEE
Q 018293          157 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG  235 (358)
Q Consensus       157 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i  235 (358)
                      .+..+..|...+.+++|+|++...+++++.|+.+++||...+.... ....+.... ...|+|++ ..+++++.|+.+++
T Consensus       190 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~  267 (466)
T COG2319         190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRL  267 (466)
T ss_pred             eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEE
Confidence            8889988999999999999884255555999999999888554444 234444443 33899966 67889999999999


Q ss_pred             EEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcC
Q 018293          236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE  315 (358)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  315 (358)
                      |+.+...        .....+..|...+.++.|.|++ ..+++++.|+.+.+||..+...........|...+..+.|.+
T Consensus       268 ~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (466)
T COG2319         268 WDLRSSS--------SLLRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP  338 (466)
T ss_pred             eeecCCC--------cEEEEEecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECC
Confidence            9999762        2233336778999999999976 666668888889999988876433332246777799999943


Q ss_pred             CCCeEEEEEccCCeEEEEEccCCC
Q 018293          316 DSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       316 ~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      ++..++..+..|+.+.+|++....
T Consensus       339 ~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         339 DGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             CCCEEEEeecCCCcEEeeecCCCc
Confidence            324444444688999999998776

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.8e-19  Score=141.70  Aligned_cols=253  Identities=16%  Similarity=0.234  Sum_probs=183.9

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceecccc-ccCCCcccEEEEecCCCCCc
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKY-KKGSHTDSVLGLAWNKEFRN  136 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~  136 (358)
                      ++.||.++++||+|+.|..+++|+++..-..                     +..+++. .-..|...|.|++|... ..
T Consensus        61 AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~---------------------k~~KPI~~~~~~H~SNIF~L~F~~~-N~  118 (609)
T KOG4227|consen   61 ALQFSHNDRFLASGGDDMHGRVWNVDELMVR---------------------KTPKPIGVMEHPHRSNIFSLEFDLE-NR  118 (609)
T ss_pred             eeeeccCCeEEeecCCcceeeeechHHHHhh---------------------cCCCCceeccCccccceEEEEEccC-Ce
Confidence            3456999999999999999999998631100                     1111111 22357789999999987 67


Q ss_pred             EEEEEEcCCeEEEEECCCCceeeeecc--cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC-ccce--eeecCCe
Q 018293          137 ILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFK--WAVAADV  211 (358)
Q Consensus       137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~--~~~~~~i  211 (358)
                      .+++|..+++|...|+++.+.+..+..  ..+.|+.+..+|.. +.|++.+.++.|.+||.+.... ....  .......
T Consensus       119 ~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F  197 (609)
T KOG4227|consen  119 FLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF  197 (609)
T ss_pred             eEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence            999999999999999999988777752  23489999999997 8999999999999999997763 2211  2234567


Q ss_pred             eeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCC----------C-------------------CCCCCc--cEEEe---
Q 018293          212 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP----------D-------------------STSQQS--SFTLH---  257 (358)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~----------~-------------------~~~~~~--~~~~~---  257 (358)
                      ..+.|+|..+.++++.+..+-+.+||.+......          .                   .....+  .+.+.   
T Consensus       198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R  277 (609)
T KOG4227|consen  198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR  277 (609)
T ss_pred             eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence            8899999989999999999999999998764300          0                   000000  11111   


Q ss_pred             ------ecC-------CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc---------------------eeeEecCC
Q 018293          258 ------AHD-------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP---------------------SCIASRNP  303 (358)
Q Consensus       258 ------~~~-------~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------------~~~~~~~~  303 (358)
                            .|.       ..+.+++|.-+  ..+++|+.+-.|++|.+.....                     .....+.+
T Consensus       278 ~~V~k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG  355 (609)
T KOG4227|consen  278 CFVLKSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG  355 (609)
T ss_pred             ceeEeccCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEec
Confidence                  111       13455666644  4689999999999999853110                     12345678


Q ss_pred             CCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          304 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       304 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      |...++.+.|+|... +|++.+-...+++|.-.
T Consensus       356 HRSv~NQVRF~~H~~-~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  356 HRSVPNQVRFSQHNN-LLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ccccccceeecCCcc-eEeccchhhheeccccc
Confidence            999999999999887 79999999999999754

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.85  E-value=3.8e-19  Score=153.46  Aligned_cols=259  Identities=19%  Similarity=0.226  Sum_probs=185.7

Q ss_pred             CcccCCCcEEEEE-EecCCCceEEEEEEeccCCCC--CceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeE
Q 018293            1 MTINPNDAVIVCA-RNEDDVSHLEVYILEESDGGD--PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI   77 (358)
Q Consensus         1 l~~~p~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i   77 (358)
                      +.|+|..+.+++| ..++     +|.+|+...+..  +.....+....+...+.+.|+.     ++.+.-+++++.||.|
T Consensus       248 ~~f~p~~p~ll~gG~y~G-----qV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~-----~~~~~~f~s~ssDG~i  317 (555)
T KOG1587|consen  248 LKFCPFDPNLLAGGCYNG-----QVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ-----NEHNTEFFSLSSDGSI  317 (555)
T ss_pred             EEeccCCcceEEeeccCc-----eEEEEEccCCCCCCCcccccccccCCcCeEEEEEec-----cCCCCceEEEecCCcE
Confidence            3578865555555 4555     888888877655  4444455556677777888976     4445678888899999


Q ss_pred             EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc-
Q 018293           78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-  156 (358)
Q Consensus        78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-  156 (358)
                      ..|+++.............               .........-...+++++|.+...+.++.|+.+|.|.--+-...+ 
T Consensus       318 ~~W~~~~l~~P~e~~~~~~---------------~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~  382 (555)
T KOG1587|consen  318 CSWDTDMLSLPVEGLLLES---------------KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP  382 (555)
T ss_pred             eeeeccccccchhhccccc---------------ccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc
Confidence            9998764333221111110               000001112335689999999888899999999998874433221 


Q ss_pred             -------eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc-cCCCccceeeecCCeeeEEEcCCCCCeEEEEe
Q 018293          157 -------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR-ISTHSGFKWAVAADVESLAWDPHAEHSFVVSL  228 (358)
Q Consensus       157 -------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  228 (358)
                             ....+..|.++|+++.++|-+..++++++ |-++++|... ...++.........+++++|+|.....|+++.
T Consensus       383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d  461 (555)
T KOG1587|consen  383 APEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD  461 (555)
T ss_pred             cccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence                   13355678899999999999977777777 9999999988 44444444455666999999999888999999


Q ss_pred             cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293          229 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  293 (358)
Q Consensus       229 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~  293 (358)
                      .||.+.+||+.....       .++.+...+....+.+.|++.| .+|++|...|.+.+|++...
T Consensus       462 ~~G~l~iWDLl~~~~-------~Pv~s~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  462 GDGNLDIWDLLQDDE-------EPVLSQKVCSPALTRVRWSPNG-KLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             CCCceehhhhhcccc-------CCcccccccccccceeecCCCC-cEEEEecCCCcEEEEEcCch
Confidence            999999999987654       4555555556777888899888 89999999999999999643

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.85  E-value=9.7e-21  Score=163.07  Aligned_cols=239  Identities=23%  Similarity=0.359  Sum_probs=182.6

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      ++.|...|.++++|+.|..++||..++..+..                           ...||.+.|+.++.+.+ ..+
T Consensus       195 ca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---------------------------s~rGhs~ditdlavs~~-n~~  246 (1113)
T KOG0644|consen  195 CAIFDRTGRYIITGSDDRLVKIWSMETARCLA---------------------------SCRGHSGDITDLAVSSN-NTM  246 (1113)
T ss_pred             eeeeccccceEeecCccceeeeeeccchhhhc---------------------------cCCCCccccchhccchh-hhh
Confidence            34568899999999999999999987655544                           45689999999999988 679


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc----eeeecC----
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF----KWAVAA----  209 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~----  209 (358)
                      +++++.|..|++|.+.++.++..+.+|++.|++++|+|--     +.+.||++++||.+-.-....    ......    
T Consensus       247 iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s  321 (1113)
T KOG0644|consen  247 IAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDS  321 (1113)
T ss_pred             hhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceee
Confidence            9999999999999999999999999999999999999843     788899999999871110000    000001    


Q ss_pred             ----------------------CeeeEEEcC----------CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe
Q 018293          210 ----------------------DVESLAWDP----------HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH  257 (358)
Q Consensus       210 ----------------------~i~~~~~~~----------~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  257 (358)
                                            ...+++|..          +...+.++.-.+-.+++|++.++         ...+.+.
T Consensus       322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---------~l~H~l~  392 (1113)
T KOG0644|consen  322 ILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---------QLLHNLM  392 (1113)
T ss_pred             eeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc---------hhhhhhc
Confidence                                  111222222          11122333334556778888776         7778888


Q ss_pred             ecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          258 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       258 ~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      +|...+..+.++|.++....+++.||...|||+-.+.++.... .+| +.+...+|+++|.. ++....-|.++|.....
T Consensus       393 ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~-~gh-~kl~d~kFSqdgts-~~lsd~hgql~i~g~gq  469 (1113)
T KOG0644|consen  393 GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF-IGH-GKLVDGKFSQDGTS-IALSDDHGQLYILGTGQ  469 (1113)
T ss_pred             ccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee-ccc-ceeeccccCCCCce-EecCCCCCceEEeccCC
Confidence            9999999999999888888899999999999999998766665 444 56778899999995 66677778999988765


Q ss_pred             CCcc
Q 018293          338 DAGI  341 (358)
Q Consensus       338 ~~~~  341 (358)
                      ++..
T Consensus       470 s~s~  473 (1113)
T KOG0644|consen  470 SKSQ  473 (1113)
T ss_pred             Cccc
Confidence            5543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.84  E-value=5.1e-19  Score=145.54  Aligned_cols=213  Identities=19%  Similarity=0.307  Sum_probs=165.6

Q ss_pred             CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293           65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  144 (358)
Q Consensus        65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  144 (358)
                      .+.|+.++.||.+.|.+-.                            .+.......|.++|.+-.|+|+ +.-|++++.|
T Consensus        75 ~d~~~i~s~DGkf~il~k~----------------------------~rVE~sv~AH~~A~~~gRW~~d-GtgLlt~GED  125 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKS----------------------------ARVERSISAHAAAISSGRWSPD-GAGLLTAGED  125 (737)
T ss_pred             cceEEEEcCCceEEEeccc----------------------------chhhhhhhhhhhhhhhcccCCC-CceeeeecCC
Confidence            4568888899999887743                            3334455679999999999999 5688999999


Q ss_pred             CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeE
Q 018293          145 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF  224 (358)
Q Consensus       145 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  224 (358)
                      |.|++|. ++|-+..++.....+|+|++|.|+.+..+++.  .+.+.+=.+.....+.....|.+-|.++.|++. .+++
T Consensus       126 G~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~-s~lI  201 (737)
T KOG1524|consen  126 GVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQ-SNII  201 (737)
T ss_pred             ceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCcc-ccce
Confidence            9999999 66766666666778999999999996666554  456666666666666656789999999999995 5699


Q ss_pred             EEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCC
Q 018293          225 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK  304 (358)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  304 (358)
                      ++|++|-..++||-..          ..++.-..|..+|++++|+|+  ..++.++. .+++             .-...
T Consensus       202 ~sgGED~kfKvWD~~G----------~~Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~R-------------~~~p~  255 (737)
T KOG1524|consen  202 ASGGEDFRFKIWDAQG----------ANLFTSAAEEYAITSVAFNPE--KDYLLWSY-NTAR-------------FSSPR  255 (737)
T ss_pred             eecCCceeEEeecccC----------cccccCChhccceeeeeeccc--cceeeeee-eeee-------------ecCCC
Confidence            9999999999999874          677788889999999999997  45565553 2333             12234


Q ss_pred             CceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          305 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       305 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      .+.|..++||+||.. +++|+..|.+.+=.+-.
T Consensus       256 ~GSifnlsWS~DGTQ-~a~gt~~G~v~~A~~ie  287 (737)
T KOG1524|consen  256 VGSIFNLSWSADGTQ-ATCGTSTGQLIVAYAIE  287 (737)
T ss_pred             ccceEEEEEcCCCce-eeccccCceEEEeeeeh
Confidence            578999999999995 88888888776544433

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.84  E-value=1.6e-19  Score=135.59  Aligned_cols=233  Identities=16%  Similarity=0.199  Sum_probs=165.9

Q ss_pred             CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293           65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  144 (358)
Q Consensus        65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  144 (358)
                      ..+|.+|..-|.|.+|++.+........                          -.|...|+.+.--|+ + .+.+-+.|
T Consensus        25 ~~rL~sg~~~G~V~~w~lqt~r~~~~~r--------------------------~~g~~~it~lq~~p~-d-~l~tqgRd   76 (323)
T KOG0322|consen   25 NERLMSGLSVGIVKMWVLQTERDLPLIR--------------------------LFGRLFITNLQSIPN-D-SLDTQGRD   76 (323)
T ss_pred             chhhhcccccceEEEEEeecCccchhhh--------------------------hhccceeeceeecCC-c-chhhcCCC
Confidence            4469999999999999998754433211                          136678888888886 3 57788889


Q ss_pred             CeEEEEECCCCceee-------------------------ee----------------------------cccccceeeE
Q 018293          145 KQVKIWDVAAGKCNL-------------------------TL----------------------------EHHTDKVQAV  171 (358)
Q Consensus       145 g~v~iwd~~~~~~~~-------------------------~~----------------------------~~~~~~v~~~  171 (358)
                      +.+.+|++.-+..+.                         .+                            .+..+.+.+.
T Consensus        77 ~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~  156 (323)
T KOG0322|consen   77 PLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ  156 (323)
T ss_pred             ceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence            999999876321100                         00                            0112344454


Q ss_pred             EEcCC-CC-cEEEEEeCCCcEEEEEcccCCCc----------cceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcc
Q 018293          172 AWNHH-SP-QILLSGSFDRSVVMKDARISTHS----------GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR  239 (358)
Q Consensus       172 ~~~~~-~~-~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~  239 (358)
                      .+..+ +. -++++|.++|.+.+||+.++...          .....|..++.++.+.+. ...=++|+.+..+..|.+.
T Consensus       157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dkl~~~Sl~  235 (323)
T KOG0322|consen  157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDKLVMYSLN  235 (323)
T ss_pred             eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-hcCCcCCCccccceeeeec
Confidence            43322 21 35677889999999999987322          223457788999999873 2344667777788899887


Q ss_pred             cCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCe
Q 018293          240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF  319 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  319 (358)
                      ......     +....+......+..+.+-||+ +.++|++.|+.|+||..++.++  +..+..|...|++++|+|+.+ 
T Consensus       236 ~s~gsl-----q~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl~p--LAVLkyHsagvn~vAfspd~~-  306 (323)
T KOG0322|consen  236 HSTGSL-----QIRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTLNP--LAVLKYHSAGVNAVAFSPDCE-  306 (323)
T ss_pred             cccCcc-----cccceEEecCCCccceEEccCC-cEEeecccCCcEEEEEeccCCc--hhhhhhhhcceeEEEeCCCCc-
Confidence            652211     2222333345668899999998 9999999999999999999996  445667889999999999977 


Q ss_pred             EEEEEccCCeEEEEEc
Q 018293          320 VLAIGGSKGKLEIWDT  335 (358)
Q Consensus       320 ~l~~~~~dg~i~vw~~  335 (358)
                      ++|+++.|++|.+|++
T Consensus       307 lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  307 LMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhccCCceEEeeec
Confidence            7999999999999986

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=5.5e-18  Score=147.18  Aligned_cols=260  Identities=16%  Similarity=0.186  Sum_probs=178.1

Q ss_pred             ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      .++||+++++|+|..||.|.+|.--..+                       ......+.+.=|...|++++|+++ +.+|
T Consensus       211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~~-----------------------~~~~t~t~lHWH~~~V~~L~fS~~-G~~L  266 (792)
T KOG1963|consen  211 VALSPNERYLAAGDSDGRILVWRDFGSS-----------------------DDSETCTLLHWHHDEVNSLSFSSD-GAYL  266 (792)
T ss_pred             EEeccccceEEEeccCCcEEEEeccccc-----------------------cccccceEEEecccccceeEEecC-CceE
Confidence            3459999999999999999999753210                       111122344568899999999999 5699


Q ss_pred             EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce-----------eee
Q 018293          139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-----------WAV  207 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------~~~  207 (358)
                      ++|+..|.+.+|.+++++ .+-+..-.++|..+.++||+ .+.+....|+.|.+....+.......           ...
T Consensus       267 lSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~  344 (792)
T KOG1963|consen  267 LSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRP  344 (792)
T ss_pred             eecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccc
Confidence            999999999999999998 55566678999999999999 77778888999999876543322111           112


Q ss_pred             cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCC----------------------------------------
Q 018293          208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS----------------------------------------  247 (358)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~----------------------------------------  247 (358)
                      .+-.+.++++| ..+.++-.+..|.|++||+.+.......                                        
T Consensus       345 ~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~  423 (792)
T KOG1963|consen  345 QSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKF  423 (792)
T ss_pred             cccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhh
Confidence            34466778888 4557777788888888888765321000                                        


Q ss_pred             --C------------CCCcc-----EEEeecCCceeEEEecC-CCCcEEEEEeCCCcEEEEecCCCC--------ceeeE
Q 018293          248 --T------------SQQSS-----FTLHAHDKAVCTISYNP-LVPNLLATGSTDKMVKLWDLSNNQ--------PSCIA  299 (358)
Q Consensus       248 --~------------~~~~~-----~~~~~~~~~i~~i~~~~-~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~  299 (358)
                        .            ....-     .....|...+...++.+ ......++++.||.+++|-+...+        ..+..
T Consensus       424 ~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~  503 (792)
T KOG1963|consen  424 NFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKA  503 (792)
T ss_pred             hccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEee
Confidence              0            00000     01123444444444433 332378899999999999984321        22333


Q ss_pred             ecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293          300 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       300 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                      ...-|..++++.+|+.||. +| +.+.|++|.+||..+...+....+.
T Consensus       504 i~sy~k~~i~a~~fs~dGs-ll-a~s~~~~Itiwd~~~~~~l~~~~~~  549 (792)
T KOG1963|consen  504 IGSYHKTPITALCFSQDGS-LL-AVSFDDTITIWDYDTKNELLCTEGS  549 (792)
T ss_pred             eeccccCcccchhhcCCCc-EE-EEecCCEEEEecCCChhhhhccccc
Confidence            3345788999999999997 45 4678899999999885444443333

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.83  E-value=3.8e-18  Score=131.72  Aligned_cols=244  Identities=19%  Similarity=0.250  Sum_probs=183.0

Q ss_pred             CCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccE
Q 018293           46 PAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV  125 (358)
Q Consensus        46 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  125 (358)
                      ..++.|.+|       ++|+..+|++.....|.||.....+.                        ....+.+..|...|
T Consensus        10 ~~pitchAw-------n~drt~iAv~~~~~evhiy~~~~~~~------------------------w~~~htls~Hd~~v   58 (361)
T KOG1523|consen   10 LEPITCHAW-------NSDRTQIAVSPNNHEVHIYSMLGADL------------------------WEPAHTLSEHDKIV   58 (361)
T ss_pred             cCceeeeee-------cCCCceEEeccCCceEEEEEecCCCC------------------------ceeceehhhhCcce
Confidence            445567777       89999999999999999999864332                        44556777899999


Q ss_pred             EEEecCCCCCcEEEEEEcCCeEEEEEC-CCC--ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-
Q 018293          126 LGLAWNKEFRNILASASADKQVKIWDV-AAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-  201 (358)
Q Consensus       126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-  201 (358)
                      ++++|+|. .+.|++|+.|..-.+|.. ..+  ++...+..+...++++.|+|.+ +.|++|+....|.+|-.+....- 
T Consensus        59 tgvdWap~-snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWW  136 (361)
T KOG1523|consen   59 TGVDWAPK-SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWW  136 (361)
T ss_pred             eEEeecCC-CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEeccccee
Confidence            99999999 678999999999999998 333  4555666688999999999999 88999999999999988765432 


Q ss_pred             ---cceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCC---------CCCCCCccEEEeecCCceeEEEec
Q 018293          202 ---GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP---------DSTSQQSSFTLHAHDKAVCTISYN  269 (358)
Q Consensus       202 ---~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~---------~~~~~~~~~~~~~~~~~i~~i~~~  269 (358)
                         .....+.+.|.++.|+| ++-++++|+.|+..++|..--.....         ..+.......+....+.+..+.|+
T Consensus       137 VsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs  215 (361)
T KOG1523|consen  137 VSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS  215 (361)
T ss_pred             hhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC
Confidence               22345678899999999 56689999999999998764322111         111222333344556889999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC
Q 018293          270 PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK  327 (358)
Q Consensus       270 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  327 (358)
                      |.| +.|+-.+.|..+.+-|.....+ .+.......-+..++.|-.+..  ++.++.|
T Consensus       216 ~sG-~~lawv~Hds~v~~~da~~p~~-~v~~~~~~~lP~ls~~~ise~~--vv~ag~~  269 (361)
T KOG1523|consen  216 PSG-NRLAWVGHDSTVSFVDAAGPSE-RVQSVATAQLPLLSVSWISENS--VVAAGYD  269 (361)
T ss_pred             CCC-CEeeEecCCCceEEeecCCCch-hccchhhccCCceeeEeecCCc--eeecCCC
Confidence            999 8888888899999999877643 2222222236788888877665  4445555

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=2.5e-18  Score=151.99  Aligned_cols=249  Identities=19%  Similarity=0.222  Sum_probs=178.1

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecC-CCCCc
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRN  136 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~  136 (358)
                      .+.|+|-...++++...-.|+|||...++....+..-.                        .-...|+.+.+- .++..
T Consensus      1069 ~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~------------------------~~~t~Vs~l~liNe~D~a 1124 (1387)
T KOG1517|consen 1069 TLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA------------------------FPDTRVSDLELINEQDDA 1124 (1387)
T ss_pred             eeeecCCCceeEEcCCcceEEEEecccCceeccccCCC------------------------CCCCccceeeeecccchh
Confidence            44568888899999878899999998665543221100                        133568888874 44466


Q ss_pred             EEEEEEcCCeEEEEECC-C----Cceeeeecc-------cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc-
Q 018293          137 ILASASADKQVKIWDVA-A----GKCNLTLEH-------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-  203 (358)
Q Consensus       137 ~l~s~~~dg~v~iwd~~-~----~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-  203 (358)
                      ++++|+.||.|+||+-- +    .+.+..+.+       ..+.-.-+.|.... .+|++++.-..|++||........- 
T Consensus      1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred             heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeec
Confidence            89999999999999742 2    223332221       11112346787776 5666777688999999988765432 


Q ss_pred             eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCc--eeEEEecCCCCcEEEEEeC
Q 018293          204 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGST  281 (358)
Q Consensus       204 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~l~~~~~  281 (358)
                      ..+....++++.-+...++++++|..||.|++||.|....      ...+.....|...  |..+.+.+.|-..|++|+.
T Consensus      1204 P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~ 1277 (1387)
T KOG1517|consen 1204 PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ 1277 (1387)
T ss_pred             ccCCCccceeecccccCCceEEEeecCCceEEeecccCCc------cccceeecccCCcccceeEEeecCCCcceeeecc
Confidence            2234456777776666778999999999999999998743      2356667778776  9999999987567999999


Q ss_pred             CCcEEEEecCCCCceeeEecCCCC--c-eeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          282 DKMVKLWDLSNNQPSCIASRNPKA--G-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       282 dg~i~i~d~~~~~~~~~~~~~~~~--~-~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      ||.|++||++............|.  + .++++..++..+ ++|+|+. +.|+||++...+
T Consensus      1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred             CCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhh
Confidence            999999999985333333333332  3 599999999999 7999888 999999986543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=1.2e-17  Score=146.32  Aligned_cols=246  Identities=31%  Similarity=0.471  Sum_probs=187.7

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCc-ccEEEEec-CCCCCcE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT-DSVLGLAW-NKEFRNI  137 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~~~  137 (358)
                      .|.+.+..++.++.|+.+.+|+......                          ....+.++. ..+..+.+ ++++...
T Consensus        72 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (466)
T COG2319          72 AFSPDGELLLSGSSDGTIKLWDLDNGEK--------------------------LIKSLEGLHDSSVSKLALSSPDGNSI  125 (466)
T ss_pred             EECCCCcEEEEecCCCcEEEEEcCCCce--------------------------eEEEEeccCCCceeeEEEECCCcceE
Confidence            3478899999999999999999875430                          111222222 36666666 7774435


Q ss_pred             EEEEEc-CCeEEEEECCC-CceeeeecccccceeeEEEcCCCCcEEEEEeC-CCcEEEEEcccCCCccceeeecCCeeeE
Q 018293          138 LASASA-DKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGFKWAVAADVESL  214 (358)
Q Consensus       138 l~s~~~-dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i~~~  214 (358)
                      ++..+. |+.+.+|+... ......+..|...|..++|+|++ ..+++++. |+.+++|++...........+...+.++
T Consensus       126 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  204 (466)
T COG2319         126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL  204 (466)
T ss_pred             EeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence            555444 99999999988 77888888999999999999999 67777775 9999999999866666566688999999


Q ss_pred             EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccE-EEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293          215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  293 (358)
Q Consensus       215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~  293 (358)
                      +|+|++...+++++.|+.+++||....         .... .+..|.... ...|+|++ .++++++.|+.+++|+.+..
T Consensus       205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~  273 (466)
T COG2319         205 AFSPDGGLLIASGSSDGTIRLWDLSTG---------KLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSS  273 (466)
T ss_pred             EEcCCcceEEEEecCCCcEEEEECCCC---------cEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCC
Confidence            999865535555589999999988744         4444 577777664 33899988 78889999999999999877


Q ss_pred             CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          294 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       294 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      .. .......|...+.++.|.|++.. +++++.|+.+.+|+..+........
T Consensus       274 ~~-~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~  323 (466)
T COG2319         274 SS-LLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGTVRLWDLETGKLLSSLT  323 (466)
T ss_pred             Cc-EEEEEecCCccEEEEEECCCCCE-EEEeeCCCcEEEEEcCCCceEEEee
Confidence            64 22233677889999999998885 5558888999999988776555443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.82  E-value=1.1e-18  Score=138.74  Aligned_cols=172  Identities=23%  Similarity=0.348  Sum_probs=119.4

Q ss_pred             cccCCCc-EEEEEEecCCCceEEEEEEeccCCCC--CceEeece-eecCCcccceeeecCCccccCCCceEEecCCCCeE
Q 018293            2 TINPNDA-VIVCARNEDDVSHLEVYILEESDGGD--PNLYVHHH-IIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI   77 (358)
Q Consensus         2 ~~~p~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i   77 (358)
                      .|.++.- .+++|+.+.   .+.+|-.+...+..  +.+..+.. ........++       +|+|+|++||+|+.+|.|
T Consensus        20 dfq~n~~~~laT~G~D~---~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~v-------Rf~p~gelLASg~D~g~v   89 (434)
T KOG1009|consen   20 DFQKNSLNKLATAGGDK---DIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVV-------RFSPDGELLASGGDGGEV   89 (434)
T ss_pred             EeccCcccceecccCcc---ceeeeeeeecCCCCCceeEEEeecccCCcceeEEE-------EEcCCcCeeeecCCCceE
Confidence            4566555 888887775   34455444443322  22222111 1112222344       459999999999999999


Q ss_pred             EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce
Q 018293           78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC  157 (358)
Q Consensus        78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  157 (358)
                      .+|..........        +.   -.......+.....+.+|...|..++|+|+ +.++++++.|+.+++||+..|+.
T Consensus        90 ~lWk~~~~~~~~~--------d~---e~~~~ke~w~v~k~lr~h~~diydL~Ws~d-~~~l~s~s~dns~~l~Dv~~G~l  157 (434)
T KOG1009|consen   90 FLWKQGDVRIFDA--------DT---EADLNKEKWVVKKVLRGHRDDIYDLAWSPD-SNFLVSGSVDNSVRLWDVHAGQL  157 (434)
T ss_pred             EEEEecCcCCccc--------cc---hhhhCccceEEEEEecccccchhhhhccCC-CceeeeeeccceEEEEEecccee
Confidence            9998764111100        00   001112345566677889999999999999 77999999999999999999999


Q ss_pred             eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 018293          158 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  196 (358)
Q Consensus       158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  196 (358)
                      ...+..|...+..++|.|-+ +++++-+.|...+.+.+.
T Consensus       158 ~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  158 LAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             Eeeccccccccceeecchhh-hhhhhhccCcccceeeee
Confidence            99999999999999999998 888888888766655543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=5.8e-17  Score=120.66  Aligned_cols=286  Identities=16%  Similarity=0.214  Sum_probs=173.8

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCc-eEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN-LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      +++|.++.|++|...+++..+.+.-......+.+. ...........++..+++       +  ..+|++|+ ||.|+=|
T Consensus        17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f-------~--d~~Lls~g-dG~V~gw   86 (325)
T KOG0649|consen   17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAF-------H--DDFLLSGG-DGLVYGW   86 (325)
T ss_pred             hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeee-------e--hhheeecc-CceEEEe
Confidence            57999999999988884444444333322211111 111111112223333333       3  55777776 5999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      ..+.......         .+..+.     ...+.+.-...--.|+++...|..+ -++.++.|+.+.-||+++|+..++
T Consensus        87 ~W~E~~es~~---------~K~lwe-----~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G~i~r~  151 (325)
T KOG0649|consen   87 EWNEEEESLA---------TKRLWE-----VKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDGRIQRE  151 (325)
T ss_pred             eehhhhhhcc---------chhhhh-----hcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCCEEEEE
Confidence            9875433110         000000     0001111011224689999999844 455556899999999999999999


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee----------ecCCeeeEEEcCCCCCeEEEEecC
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----------VAADVESLAWDPHAEHSFVVSLED  230 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~~d  230 (358)
                      +++|++.+.++.-.... ..+++|++||++++||.++.+.......          ....|.+++.+.   ..+++| ..
T Consensus       152 ~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCG-gG  226 (325)
T KOG0649|consen  152 YRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCG-GG  226 (325)
T ss_pred             EcCCcceeeeeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEec-CC
Confidence            99999999999885544 5689999999999999999876543221          123466666544   356665 45


Q ss_pred             CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEE
Q 018293          231 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS  310 (358)
Q Consensus       231 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~  310 (358)
                      ..+.+|.++..+.       .+++.+.   .++..+.|..   ..+++++..+.|.-|.+..--   ....+.......+
T Consensus       227 p~lslwhLrsse~-------t~vfpip---a~v~~v~F~~---d~vl~~G~g~~v~~~~l~Gvl---~a~ip~~s~~c~s  290 (325)
T KOG0649|consen  227 PKLSLWHLRSSES-------TCVFPIP---ARVHLVDFVD---DCVLIGGEGNHVQSYTLNGVL---QANIPVESTACYS  290 (325)
T ss_pred             CceeEEeccCCCc-------eEEEecc---cceeEeeeec---ceEEEeccccceeeeeeccEE---EEeccCCccceee
Confidence            6799999998732       3334443   4567777875   567888877889999875431   2222222233455


Q ss_pred             EEEcCCCCeEEEEEccCCeEEEE
Q 018293          311 VAFSEDSPFVLAIGGSKGKLEIW  333 (358)
Q Consensus       311 ~~~~~~~~~~l~~~~~dg~i~vw  333 (358)
                      ..|+..--.++..++....+.|+
T Consensus       291 ~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  291 ASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             ecccCCceEEEEecccceeeeee
Confidence            55543332245556666667665

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.82  E-value=3.8e-20  Score=149.37  Aligned_cols=237  Identities=16%  Similarity=0.233  Sum_probs=191.7

Q ss_pred             ccce-eeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEE
Q 018293           49 PLCM-AWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  127 (358)
Q Consensus        49 ~~~~-~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  127 (358)
                      .+.+ ++-|+.+.++.+|++|+.|+..|.|-.+|..+......+.                            -...|.+
T Consensus       124 ~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~----------------------------v~Etv~D  175 (545)
T KOG1272|consen  124 DLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN----------------------------VMETVRD  175 (545)
T ss_pred             cccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee----------------------------hhhhhhh
Confidence            3344 5666777789999999999999999999998766554332                            2356888


Q ss_pred             EecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee
Q 018293          128 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV  207 (358)
Q Consensus       128 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  207 (358)
                      +.|-.+ .+++|++ ....+.||| ..|..++.++.| ..|..+.|.|.. .+|++++..|.+..-|+.+++.+......
T Consensus       176 v~~LHn-eq~~AVA-QK~y~yvYD-~~GtElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~  250 (545)
T KOG1272|consen  176 VTFLHN-EQFFAVA-QKKYVYVYD-NNGTELHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTG  250 (545)
T ss_pred             hhhhcc-hHHHHhh-hhceEEEec-CCCcEEeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHcc
Confidence            999877 5566655 567899999 678888888865 568999999998 88999999999999999999998877777


Q ss_pred             cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEE
Q 018293          208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL  287 (358)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i  287 (358)
                      .+.+..++-+|.+. .+-+|..+|+|.+|.....         .++..+..|.++|.+|++.++| ++++|.+.|..++|
T Consensus       251 ~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~sk---------ePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kI  319 (545)
T KOG1272|consen  251 AGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSK---------EPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKI  319 (545)
T ss_pred             CCccchhhcCCccc-eEEEcCCCceEEecCCCCc---------chHHHHHhcCCCcceEEECCCC-cEEeecccccceeE
Confidence            78888999999544 8888999999999999887         7788888999999999999998 99999999999999


Q ss_pred             EecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          288 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       288 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      ||+++-..  +.+... .-+...+++|..|  +||. +....+.||.=
T Consensus       320 WDlR~~~q--l~t~~t-p~~a~~ls~Sqkg--lLA~-~~G~~v~iw~d  361 (545)
T KOG1272|consen  320 WDLRNFYQ--LHTYRT-PHPASNLSLSQKG--LLAL-SYGDHVQIWKD  361 (545)
T ss_pred             eeeccccc--cceeec-CCCcccccccccc--ceee-ecCCeeeeehh
Confidence            99998762  222222 3456778899887  4664 44557999953

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=3.1e-17  Score=126.66  Aligned_cols=239  Identities=16%  Similarity=0.281  Sum_probs=164.6

Q ss_pred             ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCc--ccEEEEecCCCCCc
Q 018293           59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT--DSVLGLAWNKEFRN  136 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~  136 (358)
                      ++|+.|..-+++|..+| .+||+.+.......                           ..-+.  -.+.-+-|-.+  .
T Consensus        11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~---------------------------r~~~~~G~~~veMLfR~N--~   60 (346)
T KOG2111|consen   11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESAS---------------------------RQFIDGGFKIVEMLFRSN--Y   60 (346)
T ss_pred             EEEccCCceEEEEecCc-eEEEecCchhhhhh---------------------------hccccCchhhhhHhhhhc--e
Confidence            45588999999998665 78999874222110                           00111  12222223222  2


Q ss_pred             EEEEEEcC------CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC-CCccceeeecC
Q 018293          137 ILASASAD------KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGFKWAVAA  209 (358)
Q Consensus       137 ~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~  209 (358)
                      +.+.|+.+      +.|.|||=...+++.++. ...+|.++.+.++.   +++. ..+.|.+|...+. +..........
T Consensus        61 laLVGGg~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r---iVvv-l~~~I~VytF~~n~k~l~~~et~~N  135 (346)
T KOG2111|consen   61 LALVGGGSRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR---IVVV-LENKIYVYTFPDNPKLLHVIETRSN  135 (346)
T ss_pred             EEEecCCCCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCCe---EEEE-ecCeEEEEEcCCChhheeeeecccC
Confidence            33344333      479999966667777776 67889999999864   4444 3678999998744 33332222222


Q ss_pred             CeeeEEEcCCCCCeEEE--EecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc-EE
Q 018293          210 DVESLAWDPHAEHSFVV--SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM-VK  286 (358)
Q Consensus       210 ~i~~~~~~~~~~~~~~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~  286 (358)
                      +---++..|..+..+++  |..-|.|++-|+...+.       .....+.+|.+.|.|++.+.+| .++||++..|+ |+
T Consensus       136 PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~-------~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIR  207 (346)
T KOG2111|consen  136 PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP-------NAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIR  207 (346)
T ss_pred             CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc-------CCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEE
Confidence            22234445543433333  56679999999987632       2457889999999999999998 99999999998 89


Q ss_pred             EEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          287 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       287 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      |||..++.++...........|.+|+|||+..+ ||+++..|+++|+.+.....-
T Consensus       208 IFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~-LavsSdKgTlHiF~l~~~~~~  261 (346)
T KOG2111|consen  208 IFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW-LAVSSDKGTLHIFSLRDTENT  261 (346)
T ss_pred             EEEcCCCcEeeeeecCCchheEEEEEeCCCccE-EEEEcCCCeEEEEEeecCCCC
Confidence            999999996555555555678999999999995 888999999999999875533

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.81  E-value=2.8e-18  Score=132.42  Aligned_cols=209  Identities=21%  Similarity=0.300  Sum_probs=166.4

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC---ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  197 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  197 (358)
                      -..+|+|.+|+++ +..+|.+..+..|.||.....   +..++++.|...|+.++|+|.. +.|++++.|..-++|....
T Consensus         9 ~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             ccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCC
Confidence            3478999999999 789999999999999998765   4678889999999999999999 7899999999999999843


Q ss_pred             C---CCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc
Q 018293          198 S---THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  274 (358)
Q Consensus       198 ~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  274 (358)
                      +   ++...+..+....+++.|+| .++.|++|+....|.+|-.+....-.     -..+.-..+.+.|+++.|+|++ -
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWW-----VsKhikkPirStv~sldWhpnn-V  159 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWW-----VSKHIKKPIRSTVTSLDWHPNN-V  159 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEeccccee-----hhhhhCCccccceeeeeccCCc-c
Confidence            3   23445667889999999999 57799999999999999887652211     1111234467789999999987 8


Q ss_pred             EEEEEeCCCcEEEEecC-----CCC---------c--eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          275 LLATGSTDKMVKLWDLS-----NNQ---------P--SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       275 ~l~~~~~dg~i~i~d~~-----~~~---------~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      +|++|+.|+..+||..-     +..         +  ..+.++....+.+..+.|+|+|. .|+-.+.|..+.+-|....
T Consensus       160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeecCCC
Confidence            99999999999999742     100         0  12233334567899999999999 5888999999999998766


Q ss_pred             C
Q 018293          339 A  339 (358)
Q Consensus       339 ~  339 (358)
                      .
T Consensus       239 ~  239 (361)
T KOG1523|consen  239 S  239 (361)
T ss_pred             c
Confidence            5

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1.4e-18  Score=138.88  Aligned_cols=204  Identities=18%  Similarity=0.174  Sum_probs=155.6

Q ss_pred             EEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee
Q 018293          126 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  205 (358)
Q Consensus       126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  205 (358)
                      .+++|+.+ +..+++|+.||++|+|+..+...+.....|...|.++.|+||+ .+|++-+.| ..++|+.+++.......
T Consensus       148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCC-CCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcC
Confidence            78899999 6699999999999999988888888888899999999999999 899999999 99999999985554333


Q ss_pred             --eecCCeeeEEEcCCC---CCeEEE-EecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE
Q 018293          206 --AVAADVESLAWDPHA---EHSFVV-SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  279 (358)
Q Consensus       206 --~~~~~i~~~~~~~~~---~~~~~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~  279 (358)
                        ........+.|..++   ..++++ -..-+.|+.||+.......    .-...+...-...|++++.+++| ++++.|
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~----~l~~~~~~~~~~siSsl~VS~dG-kf~AlG  299 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN----FLRLRKKIKRFKSISSLAVSDDG-KFLALG  299 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc----ccchhhhhhccCcceeEEEcCCC-cEEEEe
Confidence              223346677777654   223333 2345667777776553211    01222222234569999999999 999999


Q ss_pred             eCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          280 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       280 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      +.||.|.|++..+.+. .....+.|...|+.+.|+|+.++ +++.+.|..+.|..+.-.+
T Consensus       300 T~dGsVai~~~~~lq~-~~~vk~aH~~~VT~ltF~Pdsr~-~~svSs~~~~~v~~l~vd~  357 (398)
T KOG0771|consen  300 TMDGSVAIYDAKSLQR-LQYVKEAHLGFVTGLTFSPDSRY-LASVSSDNEAAVTKLAVDK  357 (398)
T ss_pred             ccCCcEEEEEeceeee-eEeehhhheeeeeeEEEcCCcCc-ccccccCCceeEEEEeecc
Confidence            9999999999988774 33445679999999999999996 7788889999998876533

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.81  E-value=1.2e-18  Score=147.16  Aligned_cols=231  Identities=19%  Similarity=0.304  Sum_probs=168.1

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      .++|.|||..|+.+. +..+.+||.+.+..++                           .+++|++.|+|++|+.+ +..
T Consensus        17 d~afkPDGsqL~lAA-g~rlliyD~ndG~llq---------------------------tLKgHKDtVycVAys~d-Gkr   67 (1081)
T KOG1538|consen   17 DIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQ---------------------------PLKGHKDTVYCVAYAKD-GKR   67 (1081)
T ss_pred             eeEECCCCceEEEec-CCEEEEEeCCCccccc---------------------------ccccccceEEEEEEccC-Cce
Confidence            456689999888776 4578899998766555                           57799999999999999 679


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  217 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  217 (358)
                      +|+|+.|..|.+|+.+- +-+..+ .|.+.|.|+.|+|-. +.+++++-. ..-+|........  .......+.+++|.
T Consensus        68 FASG~aDK~VI~W~~kl-EG~LkY-SH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~--K~kss~R~~~CsWt  141 (1081)
T KOG1538|consen   68 FASGSADKSVIIWTSKL-EGILKY-SHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVS--KHKSSSRIICCSWT  141 (1081)
T ss_pred             eccCCCceeEEEecccc-cceeee-ccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHH--hhhhheeEEEeeec
Confidence            99999999999998542 222333 489999999999988 778877643 4567876554332  23345678999999


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC----cEEEEEeCCCcEEEEecCCC
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP----NLLATGSTDKMVKLWDLSNN  293 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~----~~l~~~~~dg~i~i~d~~~~  293 (358)
                      .+ +.+++.|-.+|+|.+-+.....       ...+....+..++|.+++|+|..+    ..+++.....++.+|.+...
T Consensus       142 nD-GqylalG~~nGTIsiRNk~gEe-------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~  213 (1081)
T KOG1538|consen  142 ND-GQYLALGMFNGTISIRNKNGEE-------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK  213 (1081)
T ss_pred             CC-CcEEEEeccCceEEeecCCCCc-------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce
Confidence            85 5699999999999887544321       122223345678999999999642    46778888888888887653


Q ss_pred             CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          294 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       294 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      .   +..-..-.-...|+.+.++|+| +..|+.|+.+++|--
T Consensus       214 ~---Igk~r~L~FdP~CisYf~NGEy-~LiGGsdk~L~~fTR  251 (1081)
T KOG1538|consen  214 Q---IGKDRALNFDPCCISYFTNGEY-ILLGGSDKQLSLFTR  251 (1081)
T ss_pred             e---ecccccCCCCchhheeccCCcE-EEEccCCCceEEEee
Confidence            2   2111111223557899999998 555888999998864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=1.5e-17  Score=144.31  Aligned_cols=211  Identities=17%  Similarity=0.108  Sum_probs=136.8

Q ss_pred             CccccCCCceEEecCCC---CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293           58 PLKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF  134 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  134 (358)
                      ++.|||||++|+..+.+   ..|++||+.+++...                         ...+.+|.   ..++|+|+|
T Consensus       208 ~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-------------------------l~~~~g~~---~~~~wSPDG  259 (429)
T PRK01742        208 SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-------------------------VASFRGHN---GAPAFSPDG  259 (429)
T ss_pred             cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-------------------------EecCCCcc---CceeECCCC
Confidence            34559999999987643   479999987543211                         11222333   367999995


Q ss_pred             CcEEEE-EEcCCeEEEE--ECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCe
Q 018293          135 RNILAS-ASADKQVKIW--DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADV  211 (358)
Q Consensus       135 ~~~l~s-~~~dg~v~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  211 (358)
                      . .|+. .+.+|.+.||  |+.+++ ...+..+...+....|+|++..+++++..+|...+|++...........+..  
T Consensus       260 ~-~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--  335 (429)
T PRK01742        260 S-RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--  335 (429)
T ss_pred             C-EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--
Confidence            4 5554 4578876655  665555 3455556677889999999944555555788889998765432222222222  


Q ss_pred             eeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecC
Q 018293          212 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  291 (358)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~  291 (358)
                      ....|+|++. .++..+.++ +.+||+.++.         .. .+... ....++.|+|++ ++|+.++.++...+|++.
T Consensus       336 ~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~---------~~-~lt~~-~~~~~~~~sPdG-~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        336 YSAQISADGK-TLVMINGDN-VVKQDLTSGS---------TE-VLSST-FLDESPSISPNG-IMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             CCccCCCCCC-EEEEEcCCC-EEEEECCCCC---------eE-EecCC-CCCCCceECCCC-CEEEEEEcCCCceEEEEE
Confidence            4578999765 565555554 5669988762         11 11111 123567899998 788888888988888764


Q ss_pred             --CCCceeeEecCCCCceeEEEEEcCC
Q 018293          292 --NNQPSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       292 --~~~~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                        +++  ....+..|.+.+...+|+|-
T Consensus       402 ~~~G~--~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        402 SADGR--FKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ECCCC--ceEEccCCCCCCCCcccCCC
Confidence              343  45666777788888999985

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1.8e-18  Score=143.07  Aligned_cols=263  Identities=19%  Similarity=0.293  Sum_probs=178.2

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCC-CCCceEeece-eecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHH-IIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE   78 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~   78 (358)
                      ++|+|..+.|+++..+   +.+++|.++.... ....+.-+.+ ..+..+++|+..       +++++.+++|+.||+|+
T Consensus       300 l~~~~sep~lit~sed---~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v-------~~n~~~~ysgg~Dg~I~  369 (577)
T KOG0642|consen  300 LAFHPSEPVLITASED---GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV-------PSNGEHCYSGGIDGTIR  369 (577)
T ss_pred             hhcCCCCCeEEEeccc---cchhhhhhcccCCccccceeeeEEEecccCceEEEEe-------cCCceEEEeeccCceee
Confidence            4789999999999555   5666666522111 1111111111 123444556654       78999999999999999


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN  158 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  158 (358)
                      .|++.......                 ...........+.||.+.|+.+++++. ...|++++.||+++.|+.....+ 
T Consensus       370 ~w~~p~n~dp~-----------------ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w~~~~~~~-  430 (577)
T KOG0642|consen  370 CWNLPPNQDPD-----------------DSYDPSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLWEPTEESP-  430 (577)
T ss_pred             eeccCCCCCcc-----------------cccCcchhccceeccccceeeeeeccc-ccceeeecCCceEEeeccCCcCc-
Confidence            99886221111                 011234455578899999999999998 67899999999999999876655 


Q ss_pred             eeecc--cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-------eecCCeeeEEEcCCCCCeEEEEec
Q 018293          159 LTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-------AVAADVESLAWDPHAEHSFVVSLE  229 (358)
Q Consensus       159 ~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~  229 (358)
                      .++..  ..+...++.+-.......++...-+.-.++++..........       .....+..+.++|.. .+.+++..
T Consensus       431 ~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~he  509 (577)
T KOG0642|consen  431 CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHE  509 (577)
T ss_pred             cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEeccc
Confidence            33322  223345566654442333443334444444444333222111       112457788899955 58999999


Q ss_pred             CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCC
Q 018293          230 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA  305 (358)
Q Consensus       230 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  305 (358)
                      |+.|+++|..++         ..++....|...++++++.|+| -+|++++.|+.+++|.+....  ++.....|.
T Consensus       510 d~~Ir~~dn~~~---------~~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~--~~~es~~~r  573 (577)
T KOG0642|consen  510 DRSIRFFDNKTG---------KILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKT--CVLESTAHR  573 (577)
T ss_pred             CCceeccccccc---------ccchheeeccceecceeecCCC-ceEEeecCCceeehhhccchh--eeecccccc
Confidence            999999999998         8888999999999999999998 799999999999999987665  555555553

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=1.9e-16  Score=133.38  Aligned_cols=240  Identities=12%  Similarity=0.170  Sum_probs=148.8

Q ss_pred             EEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE-EcCCe
Q 018293           68 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA-SADKQ  146 (358)
Q Consensus        68 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg~  146 (358)
                      +++...++.|++|++.+......                        ...+ .+.+....++++|+ +++|+++ ..++.
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~------------------------~~~~-~~~~~~~~l~~spd-~~~lyv~~~~~~~   58 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTL------------------------LQVV-DVPGQVQPMVISPD-KRHLYVGVRPEFR   58 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceee------------------------eeEE-ecCCCCccEEECCC-CCEEEEEECCCCc
Confidence            44456789999999964221111                        1111 13345678899999 4565554 56889


Q ss_pred             EEEEECC-CCce--eeeecccccceeeEEEcCCCCcEEEEEe-CCCcEEEEEcccCCCc-cce--eeecCCeeeEEEcCC
Q 018293          147 VKIWDVA-AGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHS-GFK--WAVAADVESLAWDPH  219 (358)
Q Consensus       147 v~iwd~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~-~~~--~~~~~~i~~~~~~~~  219 (358)
                      |.+|++. +++.  +.... .......++|+|++ +++++++ .++.|.+|++...... ...  .........++++|+
T Consensus        59 i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~  136 (330)
T PRK11028         59 VLSYRIADDGALTFAAESP-LPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPD  136 (330)
T ss_pred             EEEEEECCCCceEEeeeec-CCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCC
Confidence            9999986 3432  22222 23356789999999 5555554 5899999999743322 111  112345677899997


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC-CCcEEEEecCC--CCce
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSN--NQPS  296 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~~~  296 (358)
                      +..++++...++.|.+||+.+.......  ......... ......++|+|++ ++++++.. ++.|.+|++..  ++..
T Consensus       137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~--~~~~~~~~~-g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~  212 (330)
T PRK11028        137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQ--EPAEVTTVE-GAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIE  212 (330)
T ss_pred             CCEEEEeeCCCCEEEEEEECCCCccccc--CCCceecCC-CCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEE
Confidence            7655566777899999999763210000  000111111 2345789999998 67766655 89999999974  3322


Q ss_pred             eeEecCCC------CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          297 CIASRNPK------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       297 ~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      .+......      ......+.++|++++++++...++.|.+|++....
T Consensus       213 ~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~  261 (330)
T PRK11028        213 CVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG  261 (330)
T ss_pred             EEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence            23222211      11234688999999866655568899999996544

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2.5e-16  Score=123.80  Aligned_cols=297  Identities=16%  Similarity=0.222  Sum_probs=183.0

Q ss_pred             ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEc
Q 018293            3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDL   82 (358)
Q Consensus         3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~   82 (358)
                      .+|-=.-++++..++     .|.+|+... ..+....+.   ....+.|++|-|.      .++-|++|...| |.+|..
T Consensus       106 WhqH~~~fava~ndd-----vVriy~kss-t~pt~Lks~---sQrnvtclawRPl------saselavgCr~g-IciW~~  169 (445)
T KOG2139|consen  106 WHQHIIAFAVATNDD-----VVRIYDKSS-TCPTKLKSV---SQRNVTCLAWRPL------SASELAVGCRAG-ICIWSD  169 (445)
T ss_pred             echhhhhhhhhccCc-----EEEEeccCC-CCCceecch---hhcceeEEEeccC------Ccceeeeeecce-eEEEEc
Confidence            344444566777777     889999887 333333322   2344569999764      345788887654 789988


Q ss_pred             ccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE-cCCeEEEEECCCCceeeee
Q 018293           83 DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWDVAAGKCNLTL  161 (358)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~  161 (358)
                      +.........             +........+....+| ..|+++.|+++|. .+++++ .|..|.|||..++..+...
T Consensus       170 s~tln~~r~~-------------~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~  234 (445)
T KOG2139|consen  170 SRTLNANRNI-------------RMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLI  234 (445)
T ss_pred             Cccccccccc-------------ccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCccccc
Confidence            6432221100             0011122233344456 7899999999954 666665 5678999999999776655


Q ss_pred             cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293          162 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  241 (358)
Q Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~  241 (358)
                      ....+.+.-+.|+||+ .+|+++.-|+..++|+..............+.|...+|+|.|..++++.+....  +|.+...
T Consensus       235 ~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~--lysl~f~  311 (445)
T KOG2139|consen  235 PKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPR--LYSLTFD  311 (445)
T ss_pred             ccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCce--EEEEeec
Confidence            4456778899999999 889999999999999665544333233445589999999988877777765544  4444332


Q ss_pred             CCCCCCCC------CCccEEEe-----e----cCCceeEEEecCCCCcEEEEEeCCC--------cEEEEecCCCCceee
Q 018293          242 KSDPDSTS------QQSSFTLH-----A----HDKAVCTISYNPLVPNLLATGSTDK--------MVKLWDLSNNQPSCI  298 (358)
Q Consensus       242 ~~~~~~~~------~~~~~~~~-----~----~~~~i~~i~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~  298 (358)
                      ........      ...+..+.     .    --+++.+++|.|.| .+|++.-..+        .|.+||.+...+...
T Consensus       312 ~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel  390 (445)
T KOG2139|consen  312 GEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL  390 (445)
T ss_pred             CCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence            22111110      00011110     1    13578899999999 7888765543        367788776543222


Q ss_pred             E--ecCCCCceeEEEEEcC---CCCeEEEEEccCCeEEEEEcc
Q 018293          299 A--SRNPKAGAVFSVAFSE---DSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       299 ~--~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      .  .+.+ ...-..++|+|   +++ +|..+=..|.+.-|++.
T Consensus       391 s~cg~i~-ge~P~~IsF~pl~n~g~-lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  391 SYCGMIG-GEYPAYISFGPLKNEGR-LLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             Eeccccc-CCCCceEEeeecccCCc-EEEEEeccCceEeeeeE
Confidence            1  1111 11233456655   455 56667777888888764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=5.9e-17  Score=140.67  Aligned_cols=203  Identities=14%  Similarity=0.134  Sum_probs=134.0

Q ss_pred             CCCcccEEEEecCCCCCcEEEEEEcC---CeEEEEECCCCce--eeeecccccceeeEEEcCCCCcEEEE-EeCCCcEEE
Q 018293          119 GSHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLS-GSFDRSVVM  192 (358)
Q Consensus       119 ~~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~i  192 (358)
                      ..|...+...+|+|+ ++.|+..+.+   ..|.+||+.+++.  +..+.+   ....++|+|+| +.|+. .+.+|.+.+
T Consensus       200 t~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG-~~La~~~~~~g~~~I  274 (429)
T PRK01742        200 NRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDG-SRLAFASSKDGVLNI  274 (429)
T ss_pred             ccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCC-CEEEEEEecCCcEEE
Confidence            357788999999999 4566666543   3699999988754  333333   34468999999 55554 457887666


Q ss_pred             E--EcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecC
Q 018293          193 K--DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  270 (358)
Q Consensus       193 ~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  270 (358)
                      |  |+.++.... ...+...+....|+|++..+++++..+|...+|++....        .....+ .+..  ....|+|
T Consensus       275 y~~d~~~~~~~~-lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~--------~~~~~l-~~~~--~~~~~Sp  342 (429)
T PRK01742        275 YVMGANGGTPSQ-LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG--------GGASLV-GGRG--YSAQISA  342 (429)
T ss_pred             EEEECCCCCeEe-eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC--------CCeEEe-cCCC--CCccCCC
Confidence            5  554444322 334555678899999876566666678889999886542        111222 3333  4578999


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc--CCCcccccc
Q 018293          271 LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL--SDAGISNRF  345 (358)
Q Consensus       271 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~--~~~~~~~~~  345 (358)
                      +| +.|+..+.++ +.+||+.+++...+.  ...  ...++.|+|+|++ ++.++.+|.+.+|++.  ++....++.
T Consensus       343 DG-~~ia~~~~~~-i~~~Dl~~g~~~~lt--~~~--~~~~~~~sPdG~~-i~~~s~~g~~~~l~~~~~~G~~~~~l~  412 (429)
T PRK01742        343 DG-KTLVMINGDN-VVKQDLTSGSTEVLS--STF--LDESPSISPNGIM-IIYSSTQGLGKVLQLVSADGRFKARLP  412 (429)
T ss_pred             CC-CEEEEEcCCC-EEEEECCCCCeEEec--CCC--CCCCceECCCCCE-EEEEEcCCCceEEEEEECCCCceEEcc
Confidence            98 6777766654 666999888643221  111  2356789999995 7777778888888763  455555443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=1.9e-19  Score=155.28  Aligned_cols=229  Identities=17%  Similarity=0.289  Sum_probs=174.3

Q ss_pred             ceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCc
Q 018293          110 KKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS  189 (358)
Q Consensus       110 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  189 (358)
                      ++.+....+.+|..+|+|..|... +.++++|+.|..|+||.+++..++....+|.+.|+.++.+... .++++++.|..
T Consensus       178 qkmk~ikrLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~v  255 (1113)
T KOG0644|consen  178 QKMKNIKRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKV  255 (1113)
T ss_pred             HHHHHHHHHHhhhhheeeeeeccc-cceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCce
Confidence            345566678899999999999999 6799999999999999999999999999999999999998887 88999999999


Q ss_pred             EEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC-CCCC----CCCCCCccEEEe-------
Q 018293          190 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA-KSDP----DSTSQQSSFTLH-------  257 (358)
Q Consensus       190 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~-~~~~----~~~~~~~~~~~~-------  257 (358)
                      |++|.+.++..+..+.+|.+.|++++|+|-     .+.+.||++++||.+-. ....    ..........+.       
T Consensus       256 IrvWrl~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~  330 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDR  330 (1113)
T ss_pred             EEEEecCCCchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccc
Confidence            999999999999999999999999999993     37789999999999821 1100    000000000000       


Q ss_pred             ---------ecCCceeEEEecC----------CCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCC
Q 018293          258 ---------AHDKAVCTISYNP----------LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP  318 (358)
Q Consensus       258 ---------~~~~~i~~i~~~~----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  318 (358)
                               .....+.+++|..          +-..+.+++-.+..+++|++.++.  ......+|...+..+.++|-+.
T Consensus       331 f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~--l~H~l~ghsd~~yvLd~Hpfn~  408 (1113)
T KOG0644|consen  331 FLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ--LLHNLMGHSDEVYVLDVHPFNP  408 (1113)
T ss_pred             cccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch--hhhhhcccccceeeeeecCCCc
Confidence                     0000111222222          111334444456668889988887  3555678888999999999887


Q ss_pred             eEEEEEccCCeEEEEEccCCCcccccccc
Q 018293          319 FVLAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       319 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                      .+..+++.||...|||+..|..++..+..
T Consensus       409 ri~msag~dgst~iwdi~eg~pik~y~~g  437 (1113)
T KOG0644|consen  409 RIAMSAGYDGSTIIWDIWEGIPIKHYFIG  437 (1113)
T ss_pred             HhhhhccCCCceEeeecccCCcceeeecc
Confidence            77889999999999999999888766533

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.79  E-value=7e-18  Score=138.95  Aligned_cols=183  Identities=16%  Similarity=0.247  Sum_probs=145.8

Q ss_pred             CcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeE
Q 018293          135 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  214 (358)
Q Consensus       135 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  214 (358)
                      ...|+.++.||.+.+.+ +.++....+..|.+.+.+-.|+|+| .-|+++++||.|++|.-. +-..........+|.|+
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~  151 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCA  151 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEecc-chHHHHHhhcCceeEEE
Confidence            34688889999999988 6678888889999999999999999 889999999999999843 33334455677899999


Q ss_pred             EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293          215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~  294 (358)
                      +|.|+.++.+++.+  +.+.+=-+...         ..+.....|++-|.++.|++.. +++++|++|-..+|||-....
T Consensus       152 ~W~p~S~~vl~c~g--~h~~IKpL~~n---------~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~  219 (737)
T KOG1524|consen  152 RWAPNSNSIVFCQG--GHISIKPLAAN---------SKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGAN  219 (737)
T ss_pred             EECCCCCceEEecC--CeEEEeecccc---------cceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCcc
Confidence            99998887777654  55555555443         5567788999999999999987 899999999999999987654


Q ss_pred             ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          295 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       295 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                         ++....|..+|++++|.|+.  +++.++. +++++=..+.|
T Consensus       220 ---Lf~S~~~ey~ITSva~npd~--~~~v~S~-nt~R~~~p~~G  257 (737)
T KOG1524|consen  220 ---LFTSAAEEYAITSVAFNPEK--DYLLWSY-NTARFSSPRVG  257 (737)
T ss_pred             ---cccCChhccceeeeeecccc--ceeeeee-eeeeecCCCcc
Confidence               66777899999999999994  4665654 35554333333

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=5.1e-17  Score=128.81  Aligned_cols=211  Identities=16%  Similarity=0.199  Sum_probs=167.6

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc----eeeeecccccceeeEEEcCCCCcEEEEEeCC--CcEEEEE
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMKD  194 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d  194 (358)
                      ...+|-.+.....   .|++|-.+|.+.+|..+.+.    .+..+..+ ..+..+.-++..+.++++|+..  ..+.+||
T Consensus       104 ~~~~I~gl~~~dg---~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd  179 (412)
T KOG3881|consen  104 GTKSIKGLKLADG---TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD  179 (412)
T ss_pred             ccccccchhhcCC---EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence            4566766666533   78888999999999988442    33344433 4567777788777888889998  8999999


Q ss_pred             cccCCCccce---------eeecCCeeeEEEcCCC--CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCce
Q 018293          195 ARISTHSGFK---------WAVAADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  263 (358)
Q Consensus       195 ~~~~~~~~~~---------~~~~~~i~~~~~~~~~--~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i  263 (358)
                      ++..+.+..-         ...+-.++.+.|-+ +  .+.|++++.-+.+++||.+.+        .+++..+.....++
T Consensus       180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~q--------RRPV~~fd~~E~~i  250 (412)
T KOG3881|consen  180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQ--------RRPVAQFDFLENPI  250 (412)
T ss_pred             cccceeeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCccc--------CcceeEeccccCcc
Confidence            9877433211         11233577888987 4  678999999999999999987        37888888889999


Q ss_pred             eEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          264 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       264 ~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      +++...|.+ +++++|..-|.+..||++.++. ....+.+..+.|+++..+|.++ +++++|-|+.++|+|+.+.+.+..
T Consensus       251 s~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl-~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  251 SSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKL-LGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             eeeeecCCC-cEEEEecccchhheecccCcee-eccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccchhhhh
Confidence            999999998 9999999999999999999873 3334778889999999999999 599999999999999999777766


Q ss_pred             cccc
Q 018293          344 RFSK  347 (358)
Q Consensus       344 ~~~~  347 (358)
                      .+..
T Consensus       328 vYvK  331 (412)
T KOG3881|consen  328 VYVK  331 (412)
T ss_pred             hhhh
Confidence            5543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.4e-17  Score=135.59  Aligned_cols=297  Identities=15%  Similarity=0.165  Sum_probs=204.2

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCC-CceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI   79 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v   79 (358)
                      +.|+-.|.+++.++.+.     ++.+|+...... ......|    ...++..+|+|+     .+.+-+++++.||.+++
T Consensus       148 V~FN~~Gd~l~SgSDD~-----~vv~WdW~~~~~~l~f~SGH----~~NvfQaKFiP~-----s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  148 VHFNQRGDVLASGSDDL-----QVVVWDWVSGSPKLSFESGH----CNNVFQAKFIPF-----SGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             eeecccCceeeccCccc-----eEEeehhhccCccccccccc----ccchhhhhccCC-----CCCcCceeccccCceee
Confidence            45778888988885554     666666655321 1222233    223345567764     45667999999999998


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  159 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  159 (358)
                      =.+.......                        ....+..|.++|.-++.-|+....|.+++.|+.+.-.|++++.+..
T Consensus       214 s~i~~t~~~e------------------------~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~  269 (559)
T KOG1334|consen  214 SEILETGYVE------------------------NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE  269 (559)
T ss_pred             eeecccccee------------------------cceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence            8775322222                        1224456999999999999988899999999999999998775433


Q ss_pred             ee---ccccc---ceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc------ce------eeecCCeeeEEEcCCCC
Q 018293          160 TL---EHHTD---KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG------FK------WAVAADVESLAWDPHAE  221 (358)
Q Consensus       160 ~~---~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~------~~~~~~i~~~~~~~~~~  221 (358)
                      .+   ..+..   ....++..|...+.+++++.|-.+++||.+.-....      ..      ....-.|++++++.++.
T Consensus       270 ~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s  349 (559)
T KOG1334|consen  270 KFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS  349 (559)
T ss_pred             eeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc
Confidence            33   22333   567889999887799999999999999987543221      00      12234589999997555


Q ss_pred             CeEEEEecCCeEEEEEcccCCCCCCCCC---CCccEE-EeecCC--ceeEEEec-CCCCcEEEEEeCCCcEEEEecCCCC
Q 018293          222 HSFVVSLEDGTIKGFDIRTAKSDPDSTS---QQSSFT-LHAHDK--AVCTISYN-PLVPNLLATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       222 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~-~~~~~~--~i~~i~~~-~~~~~~l~~~~~dg~i~i~d~~~~~  294 (358)
                       -++++..|-.|+++.-..+........   ...+.. +++|..  .|.++-|- |.. .++++|+.-|.|.||+-.+++
T Consensus       350 -ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t~e  427 (559)
T KOG1334|consen  350 -ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKTGE  427 (559)
T ss_pred             -ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecchhH
Confidence             566666788899985443322111111   122223 667743  46666654 544 899999999999999999998


Q ss_pred             ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          295 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       295 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      .+.  .+.+....|+|+.-+|--. +||++|-|..|+||-..+.+.
T Consensus       428 ii~--~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP~~~er  470 (559)
T KOG1334|consen  428 IIR--FMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTPLTAER  470 (559)
T ss_pred             HHH--HhhcccceEeccCCCCCCc-hhhccCCccceeeecCCcccc
Confidence            544  4444445899999999998 799999999999998855443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.77  E-value=3.8e-17  Score=122.99  Aligned_cols=158  Identities=22%  Similarity=0.281  Sum_probs=124.9

Q ss_pred             CcccEEEEecCCCC--CcEEEEEEcCCeEEEEECCCCcee----------eeecccccceeeEEEcCCCCcEEEEEeCCC
Q 018293          121 HTDSVLGLAWNKEF--RNILASASADKQVKIWDVAAGKCN----------LTLEHHTDKVQAVAWNHHSPQILLSGSFDR  188 (358)
Q Consensus       121 h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  188 (358)
                      ..+.+.|..+.-+.  .-++++|..+|.|.+||+.++..+          .....|..+|.++.+.+.- ..=++++.+.
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~d  227 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADD  227 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccc
Confidence            45678888764332  236778889999999999987333          3345689999999998765 4457788888


Q ss_pred             cEEEEEcccCCCc----cceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCcee
Q 018293          189 SVVMKDARISTHS----GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC  264 (358)
Q Consensus       189 ~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~  264 (358)
                      .+..|.+......    .........+..+..-|| ++++++++.|+.|++|..++.         .++..+.-|...|+
T Consensus       228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD-~KIlATAGWD~RiRVyswrtl---------~pLAVLkyHsagvn  297 (323)
T KOG0322|consen  228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPD-GKILATAGWDHRIRVYSWRTL---------NPLAVLKYHSAGVN  297 (323)
T ss_pred             cceeeeeccccCcccccceEEecCCCccceEEccC-CcEEeecccCCcEEEEEeccC---------Cchhhhhhhhccee
Confidence            8999988754221    112223456888999995 569999999999999999998         88889999999999


Q ss_pred             EEEecCCCCcEEEEEeCCCcEEEEec
Q 018293          265 TISYNPLVPNLLATGSTDKMVKLWDL  290 (358)
Q Consensus       265 ~i~~~~~~~~~l~~~~~dg~i~i~d~  290 (358)
                      +++|+|+. .++++++.|++|.+|++
T Consensus       298 ~vAfspd~-~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  298 AVAFSPDC-ELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEeCCCC-chhhhccCCceEEeeec
Confidence            99999987 89999999999999986

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.77  E-value=9.7e-17  Score=132.27  Aligned_cols=228  Identities=15%  Similarity=0.225  Sum_probs=160.8

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      .+++--|+.|-..|.|++.|....+...                       .......-.+..|+|+.|-|.+..+++.+
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sk-----------------------lfne~r~i~ktsvT~ikWvpg~~~~Fl~a  238 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSK-----------------------LFNEERLINKSSVTCIKWVPGSDSLFLVA  238 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHH-----------------------hhhhcccccccceEEEEEEeCCCceEEEE
Confidence            4667778888888999988865311100                       00001112347899999999888899999


Q ss_pred             EcCCeEEEEECCCCceeeeecccccceeeEEE--cCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293          142 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAW--NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  219 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  219 (358)
                      -.+|.+.+||.+          +....+...|  .+++ ..+......+      ..+...+.........|..++|+| 
T Consensus       239 ~~sGnlyly~~~----------~~~~~t~p~~~~~k~~-~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~-  300 (636)
T KOG2394|consen  239 HASGNLYLYDKE----------IVCGATAPSYQALKDG-DQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSP-  300 (636)
T ss_pred             EecCceEEeecc----------ccccCCCCcccccCCC-CeeEEeeeec------cccCCccceeEeccccccceeEcC-
Confidence            999999999962          1111122222  2333 2232221111      011122332333456899999999 


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  299 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  299 (358)
                      ++.+|++.+.||.++|||..+.         ..+..++..-+...|++|+||| ++|++|++|..|.||.+...+  .+.
T Consensus       301 DG~~LA~VSqDGfLRvF~fdt~---------eLlg~mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erR--VVA  368 (636)
T KOG2394|consen  301 DGKYLATVSQDGFLRIFDFDTQ---------ELLGVMKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERR--VVA  368 (636)
T ss_pred             CCceEEEEecCceEEEeeccHH---------HHHHHHHhhccceEEEEEcCCc-cEEEecCCcceEEEEEeccce--EEE
Confidence            5569999999999999999986         5555666667889999999999 999999999999999999888  577


Q ss_pred             ecCCCCceeEEEEEcC-----------------------------------C------------CCeEEEEEccCCeEEE
Q 018293          300 SRNPKAGAVFSVAFSE-----------------------------------D------------SPFVLAIGGSKGKLEI  332 (358)
Q Consensus       300 ~~~~~~~~v~~~~~~~-----------------------------------~------------~~~~l~~~~~dg~i~v  332 (358)
                      .-++|...|+.++|.|                                   +            -.|.+.+.+.|-.+.+
T Consensus       369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL  448 (636)
T KOG2394|consen  369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL  448 (636)
T ss_pred             eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence            7889999999999983                                   0            1457888999999999


Q ss_pred             EEccCCCccc
Q 018293          333 WDTLSDAGIS  342 (358)
Q Consensus       333 w~~~~~~~~~  342 (358)
                      ||+.......
T Consensus       449 WDlteD~L~~  458 (636)
T KOG2394|consen  449 WDLTEDVLVP  458 (636)
T ss_pred             Eecchhhccc
Confidence            9997655443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.3e-17  Score=133.33  Aligned_cols=197  Identities=17%  Similarity=0.260  Sum_probs=147.4

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      .++|+.+|..|++|+.||.+|||++.....+                           .....|...|.++.|+|+ +++
T Consensus       149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~---------------------------l~e~~~~~eV~DL~FS~d-gk~  200 (398)
T KOG0771|consen  149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTI---------------------------LEEIAHHAEVKDLDFSPD-GKF  200 (398)
T ss_pred             EEEEcCCCCEeeeccccceEEEEecCcchhh---------------------------hhhHhhcCccccceeCCC-CcE
Confidence            4567999999999999999999997643332                           234469999999999999 779


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeec--ccccceeeEEEcCCC--Cc-EEEE-EeCCCcEEEEEcccCCC-----ccceee
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHS--PQ-ILLS-GSFDRSVVMKDARISTH-----SGFKWA  206 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~--~~-~l~~-~~~dg~i~i~d~~~~~~-----~~~~~~  206 (358)
                      |++-+.| ..+||+.+++..+....  ..+.....+.|+.++  +. ++++ ....+.|+.||+.....     ......
T Consensus       201 lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~  279 (398)
T KOG0771|consen  201 LASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK  279 (398)
T ss_pred             EEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh
Confidence            9999999 89999999996666554  233456677787654  12 2322 23456677777654332     111222


Q ss_pred             ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEE
Q 018293          207 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK  286 (358)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~  286 (358)
                      ....|++++.+++ +++++.|+.||.|.+++..+.+        ......+.|...|+.+.|+|+. +++++.+.|....
T Consensus       280 ~~~siSsl~VS~d-Gkf~AlGT~dGsVai~~~~~lq--------~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~  349 (398)
T KOG0771|consen  280 RFKSISSLAVSDD-GKFLALGTMDGSVAIYDAKSLQ--------RLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAA  349 (398)
T ss_pred             ccCcceeEEEcCC-CcEEEEeccCCcEEEEEeceee--------eeEeehhhheeeeeeEEEcCCc-CcccccccCCcee
Confidence            3457999999995 5699999999999999998872        3444557899999999999998 8889888898888


Q ss_pred             EEecCCC
Q 018293          287 LWDLSNN  293 (358)
Q Consensus       287 i~d~~~~  293 (358)
                      +..+.-.
T Consensus       350 v~~l~vd  356 (398)
T KOG0771|consen  350 VTKLAVD  356 (398)
T ss_pred             EEEEeec
Confidence            8877653

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3.5e-17  Score=135.28  Aligned_cols=213  Identities=19%  Similarity=0.296  Sum_probs=154.6

Q ss_pred             cceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEe
Q 018293           50 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  129 (358)
Q Consensus        50 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  129 (358)
                      .|++|       +.+|.+|++|+.|-.+.|||.-..+.+.                          ..-.+|...|.++.
T Consensus        54 N~LeW-------n~dG~lL~SGSDD~r~ivWd~~~~Kllh--------------------------sI~TgHtaNIFsvK  100 (758)
T KOG1310|consen   54 NCLEW-------NADGELLASGSDDTRLIVWDPFEYKLLH--------------------------SISTGHTANIFSVK  100 (758)
T ss_pred             cceee-------cCCCCEEeecCCcceEEeecchhcceee--------------------------eeecccccceeEEe
Confidence            37777       8999999999999999999986322222                          23348999999999


Q ss_pred             cCCCC-CcEEEEEEcCCeEEEEECCCC----------ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC
Q 018293          130 WNKEF-RNILASASADKQVKIWDVAAG----------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  198 (358)
Q Consensus       130 ~~~~~-~~~l~s~~~dg~v~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  198 (358)
                      |-|.. ..++++|..|..|+++|+...          +....+..|...|..++-.|++++.+.++++||+++-+|++..
T Consensus       101 FvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  101 FVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             eeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence            98853 458899999999999999742          3455567789999999999999999999999999999999874


Q ss_pred             CCcccee----------eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC-------CC--CCCccEEE-ee
Q 018293          199 THSGFKW----------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-------ST--SQQSSFTL-HA  258 (358)
Q Consensus       199 ~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-------~~--~~~~~~~~-~~  258 (358)
                      .......          ..--...++..+|...++|++|+.|...++||.+.......       .+  ...++..+ .+
T Consensus       181 h~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~  260 (758)
T KOG1310|consen  181 HVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG  260 (758)
T ss_pred             ccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCc
Confidence            3221111          11134678999999999999999999999999654322110       00  00112111 11


Q ss_pred             cC-----------CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce
Q 018293          259 HD-----------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  296 (358)
Q Consensus       259 ~~-----------~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  296 (358)
                      |-           ..++-+.|+|+|..+|++-+ ...|+++|+...+..
T Consensus       261 hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~-gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  261 HLKNSQGNLDRYITCCTYVTFNPNGTELLVSWG-GEHVYLFDVNEDKSP  308 (758)
T ss_pred             cccCcccccccceeeeEEEEECCCCcEEEEeeC-CeEEEEEeecCCCCc
Confidence            21           23567899999966666544 346999999887753

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.3e-16  Score=124.07  Aligned_cols=239  Identities=17%  Similarity=0.176  Sum_probs=160.0

Q ss_pred             ccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           61 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        61 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      |++.-..+|++..|-.|++|+-.. ....                          .........|+|++|-|.+...|+.
T Consensus       106 WhqH~~~fava~nddvVriy~kss-t~pt--------------------------~Lks~sQrnvtclawRPlsaselav  158 (445)
T KOG2139|consen  106 WHQHIIAFAVATNDDVVRIYDKSS-TCPT--------------------------KLKSVSQRNVTCLAWRPLSASELAV  158 (445)
T ss_pred             echhhhhhhhhccCcEEEEeccCC-CCCc--------------------------eecchhhcceeEEEeccCCcceeee
Confidence            577666788999999999999764 1110                          0111245679999999998889999


Q ss_pred             EEcCCeEEEEECCCC----ce----------eeeecccccceeeEEEcCCCCcEEEEEe-CCCcEEEEEcccCCCcccee
Q 018293          141 ASADKQVKIWDVAAG----KC----------NLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHSGFKW  205 (358)
Q Consensus       141 ~~~dg~v~iwd~~~~----~~----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~  205 (358)
                      |+..| |++|.....    ..          +..-.+| .+|++|+|.+|| ..+++++ .|..|.+||..++.......
T Consensus       159 gCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~  235 (445)
T KOG2139|consen  159 GCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIP  235 (445)
T ss_pred             eecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCcccccc
Confidence            98865 999986521    11          1122344 689999999999 6777766 46789999999998877666


Q ss_pred             eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcE
Q 018293          206 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  285 (358)
Q Consensus       206 ~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i  285 (358)
                      ...+.++-+.|+|++. .+++++-|+..++|.....-        .... .....+.|...+|+|+|..+|++.+..-.+
T Consensus       236 ~glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~w--------t~er-w~lgsgrvqtacWspcGsfLLf~~sgsp~l  305 (445)
T KOG2139|consen  236 KGLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQSW--------TKER-WILGSGRVQTACWSPCGSFLLFACSGSPRL  305 (445)
T ss_pred             cCCCceeeEEEcCCCC-EEEEecccceeeeehhcccc--------eecc-eeccCCceeeeeecCCCCEEEEEEcCCceE
Confidence            6778899999999765 78888889999999655431        1121 222345899999999996677776655444


Q ss_pred             EEEecCCCCce-----------eeEec-----C----CCCceeEEEEEcCCCCeEEEEEccC--------CeEEEEEccC
Q 018293          286 KLWDLSNNQPS-----------CIASR-----N----PKAGAVFSVAFSEDSPFVLAIGGSK--------GKLEIWDTLS  337 (358)
Q Consensus       286 ~i~d~~~~~~~-----------~~~~~-----~----~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~vw~~~~  337 (358)
                      +-.........           .+..+     .    ...+...+++|.|.|.| ||+.-..        +.|.+||...
T Consensus       306 ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey-Lav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  306 YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY-LAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             EEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE-EEEEEcCCchhhhhhhhhhhhcccc
Confidence            43322221110           00001     0    11457889999999997 4443222        2356677665


Q ss_pred             CCc
Q 018293          338 DAG  340 (358)
Q Consensus       338 ~~~  340 (358)
                      .-.
T Consensus       385 sp~  387 (445)
T KOG2139|consen  385 SPP  387 (445)
T ss_pred             cCc
Confidence            443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.77  E-value=6.2e-18  Score=136.77  Aligned_cols=278  Identities=16%  Similarity=0.136  Sum_probs=202.5

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      +.+.-+|+.++.|+..+     .+..+|....   .  .+.+..+...+..+.|+       .+.+++|++- ...++||
T Consensus       135 ~~ytrnGrhlllgGrKG-----HlAa~Dw~t~---~--L~~Ei~v~Etv~Dv~~L-------Hneq~~AVAQ-K~y~yvY  196 (545)
T KOG1272|consen  135 LDYTRNGRHLLLGGRKG-----HLAAFDWVTK---K--LHFEINVMETVRDVTFL-------HNEQFFAVAQ-KKYVYVY  196 (545)
T ss_pred             eeecCCccEEEecCCcc-----ceeeeecccc---e--eeeeeehhhhhhhhhhh-------cchHHHHhhh-hceEEEe
Confidence            35677999999997776     6666666553   2  33344445555566665       4677888775 6789999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      |-...+                            .+-+. ....|..+.|-|. ..+|++++..|.++--|+.+|+.+..
T Consensus       197 D~~GtE----------------------------lHClk-~~~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~  246 (545)
T KOG1272|consen  197 DNNGTE----------------------------LHCLK-RHIRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVAS  246 (545)
T ss_pred             cCCCcE----------------------------Eeehh-hcCchhhhcccch-hheeeecccCCceEEEeechhhhhHH
Confidence            965322                            11222 2356899999998 77999999999999999999999999


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      +....+.+..++-+|-+ ..+-+|...|+|.+|.....+++.....|.++|.++++.+ +++++++.+.|..++|||+++
T Consensus       247 ~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  247 IRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRN  324 (545)
T ss_pred             HHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeecc
Confidence            98888899999999988 7889999999999999999999888899999999999999 567999999999999999998


Q ss_pred             CCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEec-CCCCceeeEec--CCCCceeEEEEEcCCC
Q 018293          241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL-SNNQPSCIASR--NPKAGAVFSVAFSEDS  317 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~--~~~~~~v~~~~~~~~~  317 (358)
                      -         ..+.++.. ..+...+++|..|  + ++.+....+.||.= -.+.......+  ....++|..+.|.|-.
T Consensus       325 ~---------~ql~t~~t-p~~a~~ls~Sqkg--l-LA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~E  391 (545)
T KOG1272|consen  325 F---------YQLHTYRT-PHPASNLSLSQKG--L-LALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYE  391 (545)
T ss_pred             c---------cccceeec-CCCcccccccccc--c-eeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHH
Confidence            7         33444433 3456778888644  4 44455567999952 22111111111  2224589999999976


Q ss_pred             CeEEEEEccCCeEEEEEccCCCccc
Q 018293          318 PFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       318 ~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      . +|-.|...|.-.+.=...|+.-.
T Consensus       392 D-vLGIGH~~G~tsilVPGsGePN~  415 (545)
T KOG1272|consen  392 D-VLGIGHAGGITSILVPGSGEPNY  415 (545)
T ss_pred             H-eeeccccCCceeEeccCCCCCCc
Confidence            6 56666666655554444555443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.76  E-value=1e-17  Score=137.98  Aligned_cols=224  Identities=15%  Similarity=0.180  Sum_probs=159.4

Q ss_pred             CCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEccc
Q 018293            5 PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDV   84 (358)
Q Consensus         5 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~   84 (358)
                      |.+--++++-..+     +++.++........++...........+|++|++-      +...++++-.+|.+++||..-
T Consensus       183 ~~g~dllIGf~tG-----qvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg------~~~~Fl~a~~sGnlyly~~~~  251 (636)
T KOG2394|consen  183 PKGLDLLIGFTTG-----QVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPG------SDSLFLVAHASGNLYLYDKEI  251 (636)
T ss_pred             CCCcceEEeeccC-----ceEEecchhhHHHHhhhhcccccccceEEEEEEeC------CCceEEEEEecCceEEeeccc
Confidence            4555566676655     66666665533344455554455567789999973      555667777899999998743


Q ss_pred             ccCcCc--eeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeec
Q 018293           85 IDEVQP--HVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE  162 (358)
Q Consensus        85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  162 (358)
                      ......  ...+...+... ....+......++..+.--++.|+..+|+|| +.+||+.+.||.++|+|..+.+++..++
T Consensus       252 ~~~~t~p~~~~~k~~~~f~-i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D-G~~LA~VSqDGfLRvF~fdt~eLlg~mk  329 (636)
T KOG2394|consen  252 VCGATAPSYQALKDGDQFA-ILTSKSKKTRNPVARWHIGEGSINEFAFSPD-GKYLATVSQDGFLRIFDFDTQELLGVMK  329 (636)
T ss_pred             cccCCCCcccccCCCCeeE-EeeeeccccCCccceeEeccccccceeEcCC-CceEEEEecCceEEEeeccHHHHHHHHH
Confidence            222111  11111111110 0011111222444444445669999999998 7799999999999999999999888888


Q ss_pred             ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC-----------------------
Q 018293          163 HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH-----------------------  219 (358)
Q Consensus       163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-----------------------  219 (358)
                      ..-+...|++|+||| +++++|++|-.|.||.+...+.+..-.+|.+.|..++|+|.                       
T Consensus       330 SYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~  408 (636)
T KOG2394|consen  330 SYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHD  408 (636)
T ss_pred             hhccceEEEEEcCCc-cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcc
Confidence            777889999999999 99999999999999999998888878889999999999841                       


Q ss_pred             ------------------------CCCeEEEEecCCeEEEEEcccCC
Q 018293          220 ------------------------AEHSFVVSLEDGTIKGFDIRTAK  242 (358)
Q Consensus       220 ------------------------~~~~~~~~~~dg~i~i~d~~~~~  242 (358)
                                              -.+.|.+.+.|-.+.+||+....
T Consensus       409 ~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~  455 (636)
T KOG2394|consen  409 FEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV  455 (636)
T ss_pred             cccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence                                    02356677889999999997653

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1e-15  Score=133.34  Aligned_cols=241  Identities=15%  Similarity=0.201  Sum_probs=174.8

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCC--
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR--  135 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--  135 (358)
                      .+.||+|+++++... +..|.||...++++..                           .+.+|..++..+.+.|...  
T Consensus        21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---------------------------~l~~~~a~l~s~~~~~~~~~~   72 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---------------------------SLEDHTAPLTSVIVLPSSENA   72 (792)
T ss_pred             ccccccCCcEEEEee-CCEEEEEecchHhhhh---------------------------hcccccCccceeeecCCCccc
Confidence            345799999888776 5699999998876654                           5668999999999988755  


Q ss_pred             cEEEEEEcCCeEEEEECCCCceeeeecccccceee---------------------------------------------
Q 018293          136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQA---------------------------------------------  170 (358)
Q Consensus       136 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~---------------------------------------------  170 (358)
                      .++++++.||.|++||...+.+++++..+ .++..                                             
T Consensus        73 ~~~~~~sl~G~I~vwd~~~~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~  151 (792)
T KOG1963|consen   73 NYLIVCSLDGTIRVWDWSDGELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDS  151 (792)
T ss_pred             eEEEEEecCccEEEecCCCcEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccc
Confidence            47789999999999999988777665421 11111                                             


Q ss_pred             --------------EEEcCCCCcEEEEEeCCCcEEEEEcccCCCc----cceeeecCCeeeEEEcCCCCCeEEEEecCCe
Q 018293          171 --------------VAWNHHSPQILLSGSFDRSVVMKDARISTHS----GFKWAVAADVESLAWDPHAEHSFVVSLEDGT  232 (358)
Q Consensus       171 --------------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~  232 (358)
                                    +.+++.+ . +.....+..+.+|+.......    .....|...+++.+++| .+++++++..||.
T Consensus       152 ~~~d~~~~~~~~~~I~~~~~g-e-~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGr  228 (792)
T KOG1963|consen  152 AKGDFLKEHQEPKSIVDNNSG-E-FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGR  228 (792)
T ss_pred             cchhhhhhhcCCccEEEcCCc-e-EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCc
Confidence                          2222222 1 111222334555655543311    01112444589999999 5679999999999


Q ss_pred             EEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEE
Q 018293          233 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  312 (358)
Q Consensus       233 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  312 (358)
                      |.+|.--.....     ......++-|..+|+++.|+++| .+|++|+..|.+.+|.+.++++   +.++.-.++|..+.
T Consensus       229 I~vw~d~~~~~~-----~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k---qfLPRLgs~I~~i~  299 (792)
T KOG1963|consen  229 ILVWRDFGSSDD-----SETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK---QFLPRLGSPILHIV  299 (792)
T ss_pred             EEEEeccccccc-----cccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc---ccccccCCeeEEEE
Confidence            999976542111     14456778899999999999999 8999999999999999999873   33455568999999


Q ss_pred             EcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          313 FSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       313 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      ++||+.+ .+....|+.|.+-.+.+.+.
T Consensus       300 vS~ds~~-~sl~~~DNqI~li~~~dl~~  326 (792)
T KOG1963|consen  300 VSPDSDL-YSLVLEDNQIHLIKASDLEI  326 (792)
T ss_pred             EcCCCCe-EEEEecCceEEEEeccchhh
Confidence            9999994 77788899999998866543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.75  E-value=7.5e-15  Score=123.56  Aligned_cols=292  Identities=13%  Similarity=0.114  Sum_probs=173.9

Q ss_pred             CcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEccccc
Q 018293            7 DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVID   86 (358)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~   86 (358)
                      ++++++...++.    ++.+.|....   .....  ......+ .     ..+.|+|||+++++++.||.|.++|+.+.+
T Consensus         5 ~~l~~V~~~~~~----~v~viD~~t~---~~~~~--i~~~~~~-h-----~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~   69 (369)
T PF02239_consen    5 GNLFYVVERGSG----SVAVIDGATN---KVVAR--IPTGGAP-H-----AGLKFSPDGRYLYVANRDGTVSVIDLATGK   69 (369)
T ss_dssp             GGEEEEEEGGGT----EEEEEETTT----SEEEE--EE-STTE-E-----EEEE-TT-SSEEEEEETTSEEEEEETTSSS
T ss_pred             ccEEEEEecCCC----EEEEEECCCC---eEEEE--EcCCCCc-e-----eEEEecCCCCEEEEEcCCCeEEEEECCccc
Confidence            466665544332    8888887764   22211  1111100 0     123468999999999999999999998766


Q ss_pred             CcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeeccc--
Q 018293           87 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH--  164 (358)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--  164 (358)
                      .+....                            -.....+++++++|..++++...++.+.++|.++.++++.+...  
T Consensus        70 ~v~~i~----------------------------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~  121 (369)
T PF02239_consen   70 VVATIK----------------------------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGM  121 (369)
T ss_dssp             EEEEEE-----------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE
T ss_pred             EEEEEe----------------------------cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccc
Confidence            444322                            22346789999996544455567899999999999998887532  


Q ss_pred             -----ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293          165 -----TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  238 (358)
Q Consensus       165 -----~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~  238 (358)
                           ...+.++..+|..+.++++.-..+.|.+.|....+... .............|+|++.+++++...++.|-++|.
T Consensus       122 ~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~  201 (369)
T PF02239_consen  122 PVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDT  201 (369)
T ss_dssp             -TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred             cccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEee
Confidence                 34567888888884455555556888888877764433 233345667889999976655565666778888887


Q ss_pred             ccCCCCC----------------------------------------------CCCCCCccEEEeecCCceeEEEecCCC
Q 018293          239 RTAKSDP----------------------------------------------DSTSQQSSFTLHAHDKAVCTISYNPLV  272 (358)
Q Consensus       239 ~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~i~~i~~~~~~  272 (358)
                      .+.+...                                              .....+.+..+.....+ .-+..+|++
T Consensus       202 ~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s  280 (369)
T PF02239_consen  202 KTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDS  280 (369)
T ss_dssp             TTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-
T ss_pred             ccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCC
Confidence            6653200                                              01112233334433344 567779988


Q ss_pred             CcEEEEE----eCCCcEEEEecCCCCceeeEecCC-CCceeEEEEEcCCCCeEEEEEccCC-eEEEEEccCCCcccccc
Q 018293          273 PNLLATG----STDKMVKLWDLSNNQPSCIASRNP-KAGAVFSVAFSEDSPFVLAIGGSKG-KLEIWDTLSDAGISNRF  345 (358)
Q Consensus       273 ~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~~  345 (358)
                       .++.+.    ...+.|.++|.++.+  .+..+.. ....+..+.|+++|++++++.-..+ .|.+||..+.+.+.+.-
T Consensus       281 -~~vwvd~~~~~~~~~v~viD~~tl~--~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  281 -RYVWVDTFLNPDADTVQVIDKKTLK--VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             -SEEEEE-TT-SSHT-EEEEECCGTE--EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             -ccEEeeccCCCCCceEEEEECcCcc--eeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence             677766    445789999999885  3333322 1234889999999998887776655 89999999998877654

...

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.8e-16  Score=125.92  Aligned_cols=168  Identities=18%  Similarity=0.244  Sum_probs=136.1

Q ss_pred             ccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC------Cceeeeec-ccccceeeEEEcCCCCcEEEEEeCC
Q 018293          115 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA------GKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFD  187 (358)
Q Consensus       115 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d  187 (358)
                      ...+.+|.+.|++|.|+.+ +.+|++|+.|..+++|+++.      .+++.... .|...|.|++|.... .++++|..+
T Consensus        49 qKD~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~  126 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERW  126 (609)
T ss_pred             hhhhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-eeEecCCCc
Confidence            3456689999999999999 78999999999999999863      34554443 356899999999877 899999999


Q ss_pred             CcEEEEEcccCCCccceeee---cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCcee
Q 018293          188 RSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC  264 (358)
Q Consensus       188 g~i~i~d~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~  264 (358)
                      ++|.+.|+++.+.+. ...+   .+.|..+..+|. .+.+++.+.++.|.+||.+.....      .....+........
T Consensus       127 ~~VI~HDiEt~qsi~-V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~------~~~~~~AN~~~~F~  198 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIY-VANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNP------ISLVLPANSGKNFY  198 (609)
T ss_pred             ceeEeeecccceeee-eecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCC------CceeeecCCCccce
Confidence            999999999988765 3333   358999999996 679999999999999999976321      22333334456678


Q ss_pred             EEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293          265 TISYNPLVPNLLATGSTDKMVKLWDLSN  292 (358)
Q Consensus       265 ~i~~~~~~~~~l~~~~~dg~i~i~d~~~  292 (358)
                      .+.|+|..+.+|++.+..+-+.+||.+.
T Consensus       199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~  226 (609)
T KOG4227|consen  199 TAEFHPETPALILVNSETGGPNVFDRRM  226 (609)
T ss_pred             eeeecCCCceeEEeccccCCCCceeecc
Confidence            8999999889999999999999999875

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.73  E-value=7.5e-16  Score=120.42  Aligned_cols=254  Identities=16%  Similarity=0.251  Sum_probs=169.0

Q ss_pred             ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCC------------cccEE
Q 018293           59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH------------TDSVL  126 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~  126 (358)
                      +.|...|.+||||..+|.|.++.-...... .                     ......++.|            ...|.
T Consensus        31 vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-e---------------------y~~~t~fqshepEFDYLkSleieEKin   88 (433)
T KOG1354|consen   31 VEFDHYGERLATGDKGGRVVLFEREKLYKG-E---------------------YNFQTEFQSHEPEFDYLKSLEIEEKIN   88 (433)
T ss_pred             EEeecccceEeecCCCCeEEEeeccccccc-c---------------------eeeeeeeeccCcccchhhhhhhhhhhh
Confidence            344789999999999999999976432210 1                     1111122222            35789


Q ss_pred             EEecCCCC-CcEEEEEEcCCeEEEEECCCCcee-----------------------------------eee-ccccccee
Q 018293          127 GLAWNKEF-RNILASASADKQVKIWDVAAGKCN-----------------------------------LTL-EHHTDKVQ  169 (358)
Q Consensus       127 ~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~-----------------------------------~~~-~~~~~~v~  169 (358)
                      .+.|.+++ ...++..+.|.+|++|.+......                                   +.+ .+|+..|.
T Consensus        89 kIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiN  168 (433)
T KOG1354|consen   89 KIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHIN  168 (433)
T ss_pred             hceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEee
Confidence            99998764 336677788999999987532110                                   011 25788899


Q ss_pred             eEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee--------eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293          170 AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  241 (358)
Q Consensus       170 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~  241 (358)
                      ++.++.|. ..++++ .|-.|.+|+++-........        ....-|++..|+|...+.++.++..|+|++-|+|..
T Consensus       169 SIS~NsD~-Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~  246 (433)
T KOG1354|consen  169 SISVNSDK-ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS  246 (433)
T ss_pred             eeeecCcc-ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence            99999998 555554 58889999987544322111        233458899999998899999999999999999954


Q ss_pred             CCCCC-------CCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC-CCceeeEecCCCCc-------
Q 018293          242 KSDPD-------STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN-NQPSCIASRNPKAG-------  306 (358)
Q Consensus       242 ~~~~~-------~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~-------  306 (358)
                      .....       ........-+..--..|..+.|+++| +++++-.. -+|++||+.. .++  +...+.|..       
T Consensus       247 aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltvk~wD~nme~~p--v~t~~vh~~lr~kLc~  322 (433)
T KOG1354|consen  247 ALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTVKLWDLNMEAKP--VETYPVHEYLRSKLCS  322 (433)
T ss_pred             hhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ceeEEEeccccCCc--ceEEeehHhHHHHHHH
Confidence            21110       00001111112223568899999998 88887543 5799999954 343  333333321       


Q ss_pred             --------eeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          307 --------AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       307 --------~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                              .-..++|+.++.+ +++|+..+.+++|++..|...
T Consensus       323 lYEnD~IfdKFec~~sg~~~~-v~TGsy~n~frvf~~~~gsk~  364 (433)
T KOG1354|consen  323 LYENDAIFDKFECSWSGNDSY-VMTGSYNNVFRVFNLARGSKE  364 (433)
T ss_pred             HhhccchhheeEEEEcCCcce-EecccccceEEEecCCCCcce
Confidence                    1345889999985 889999999999997766544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.73  E-value=1.6e-15  Score=117.96  Aligned_cols=286  Identities=16%  Similarity=0.271  Sum_probs=176.1

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceE-EecCCCCeEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIW   80 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~vw   80 (358)
                      .|||+|+.+++...-      ++.+-|...     +..|+-...-..+.-++|       +.|..++ .....|+.|.+|
T Consensus        15 ~fSp~g~yiAs~~~y------rlviRd~~t-----lq~~qlf~cldki~yieW-------~ads~~ilC~~yk~~~vqvw   76 (447)
T KOG4497|consen   15 SFSPCGNYIASLSRY------RLVIRDSET-----LQLHQLFLCLDKIVYIEW-------KADSCHILCVAYKDPKVQVW   76 (447)
T ss_pred             eECCCCCeeeeeeee------EEEEeccch-----hhHHHHHHHHHHhhheee-------eccceeeeeeeeccceEEEE
Confidence            589999999998432      444544443     223332111222335677       4565554 556678899999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      ++...+                           -..........+.+++|+|+|+.+|.+...|-.|.+|.+.+.+... 
T Consensus        77 sl~Qpe---------------------------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-  128 (447)
T KOG4497|consen   77 SLVQPE---------------------------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-  128 (447)
T ss_pred             Eeecce---------------------------eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-
Confidence            996322                           1123334667899999999988899999999999999998876543 


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeC-C-----------------------------------CcEEEEEcccCCCccce
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSF-D-----------------------------------RSVVMKDARISTHSGFK  204 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----------------------------------g~i~i~d~~~~~~~~~~  204 (358)
                      ++.....+..++|+|+| ++.+.++. |                                   ..+.+||---.-.+. .
T Consensus       129 ~~~pK~~~kg~~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~-a  206 (447)
T KOG4497|consen  129 LPHPKTNVKGYAFHPDG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY-A  206 (447)
T ss_pred             ecccccCceeEEECCCC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee-e
Confidence            22233446788889888 65555443 2                                   123333321111111 1


Q ss_pred             eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC--------------------------------------
Q 018293          205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD--------------------------------------  246 (358)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~--------------------------------------  246 (358)
                      ....-.+..++|+| .++++++|+.|+.+++.+--+.+...+                                      
T Consensus       207 Ye~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~  285 (447)
T KOG4497|consen  207 YERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE  285 (447)
T ss_pred             eeeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence            22234678899999 566999999999988755433221000                                      


Q ss_pred             ------C-------------CCCCccEEEeecCCceeEEEecCCCCcEEEEEeC--CCcEEEEecCCCCceeeEecCCCC
Q 018293          247 ------S-------------TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIASRNPKA  305 (358)
Q Consensus       247 ------~-------------~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~  305 (358)
                            .             ...++........-.+.-++|++|. .+++|-..  -..+-+||++..+...+   -...
T Consensus       286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l~av---LiQk  361 (447)
T KOG4497|consen  286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKLHAV---LIQK  361 (447)
T ss_pred             cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhhhhh---hhhc
Confidence                  0             0000000111112346678999987 77777543  24589999998874332   3345


Q ss_pred             ceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          306 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       306 ~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      .+|....|+|.... |+.+.....+++|.......+
T Consensus       362 ~piraf~WdP~~pr-L~vctg~srLY~W~psg~~~V  396 (447)
T KOG4497|consen  362 HPIRAFEWDPGRPR-LVVCTGKSRLYFWAPSGPRVV  396 (447)
T ss_pred             cceeEEEeCCCCce-EEEEcCCceEEEEcCCCceEE
Confidence            68999999998885 666666678999988654433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.73  E-value=6.5e-16  Score=139.00  Aligned_cols=228  Identities=18%  Similarity=0.238  Sum_probs=165.9

Q ss_pred             ceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC-------ceeeeecccccceeeEEEcCCCCcEEE
Q 018293          110 KKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILL  182 (358)
Q Consensus       110 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~  182 (358)
                      .+...+..+..|...|..++.++....++++|+.||+|++||.+.-       +...++......+.++...+.+ +.++
T Consensus      1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~A 1114 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFA 1114 (1431)
T ss_pred             ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEE
Confidence            4566777888899999999999886689999999999999998632       2233444356788899999988 7889


Q ss_pred             EEeCCCcEEEEEcccCCCccc--------eeeecCC-eeeEEEcCCCCC-eEEEEecCCeEEEEEcccCCCCCCCCCCCc
Q 018293          183 SGSFDRSVVMKDARISTHSGF--------KWAVAAD-VESLAWDPHAEH-SFVVSLEDGTIKGFDIRTAKSDPDSTSQQS  252 (358)
Q Consensus       183 ~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~-i~~~~~~~~~~~-~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~  252 (358)
                      +++.||.|.+.++........        .....+. +..-++...... .++.++..+.|..||+++....       -
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~-------w 1187 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA-------W 1187 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH-------H
Confidence            999999999999876321110        0111222 333344443333 7888889999999999987321       1


Q ss_pred             cEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC---CeEEEEEc-cCC
Q 018293          253 SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS---PFVLAIGG-SKG  328 (358)
Q Consensus       253 ~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~-~dg  328 (358)
                      ........+.|++++.+|.+ +++++|+..|.+.+||++-+.+.....+..+ .++..+..+|-.   ...++++. ..+
T Consensus      1188 ~lk~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred             hhhcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEecccCCC
Confidence            12223345789999999988 8999999999999999999987666665544 788888887743   34444444 578


Q ss_pred             eEEEEEccCCCcccccccc
Q 018293          329 KLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       329 ~i~vw~~~~~~~~~~~~~~  347 (358)
                      .|.+|++.+|.+-..++..
T Consensus      1266 evs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred             ceeeeecccCcceEEEEcC
Confidence            8999999999766655555

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.73  E-value=2.4e-15  Score=135.45  Aligned_cols=248  Identities=16%  Similarity=0.215  Sum_probs=161.9

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      ++++.++++|+.||+|++|+........                    ...+....+......+.++...+. ++.+|.+
T Consensus      1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~--------------------~s~rS~ltys~~~sr~~~vt~~~~-~~~~Av~ 1116 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEG--------------------GSARSELTYSPEGSRVEKVTMCGN-GDQFAVS 1116 (1431)
T ss_pred             CCCCceEEEecCCceEEEeeehhhhcCc--------------------ceeeeeEEEeccCCceEEEEeccC-CCeEEEE
Confidence            5667999999999999999987432221                    111112222234567888888888 6689999


Q ss_pred             EcCCeEEEEECCCC--c-----eeeeeccc-ccce-eeEEEcCCCCc-EEEEEeCCCcEEEEEcccCCCccc--eeeecC
Q 018293          142 SADKQVKIWDVAAG--K-----CNLTLEHH-TDKV-QAVAWNHHSPQ-ILLSGSFDRSVVMKDARISTHSGF--KWAVAA  209 (358)
Q Consensus       142 ~~dg~v~iwd~~~~--~-----~~~~~~~~-~~~v-~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~  209 (358)
                      +.||.|++.++...  +     +.+....+ .+.+ ..-+|...... .++.+..-+.|..||++.......  .....+
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence            99999999998752  1     11111111 2233 33344433323 788889999999999987654322  223457


Q ss_pred             CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecCCCC--cEEEEEe--CCCc
Q 018293          210 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVP--NLLATGS--TDKM  284 (358)
Q Consensus       210 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~--~~l~~~~--~dg~  284 (358)
                      .|++++.+| ..+.++.|+..|.+.+||+|-.         .++... ..+..+++.+..+|-.+  ...++++  ..+.
T Consensus      1197 ~vTSi~idp-~~~WlviGts~G~l~lWDLRF~---------~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1197 LVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFR---------VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred             ceeEEEecC-CceEEEEecCCceEEEEEeecC---------ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc
Confidence            799999999 5569999999999999999976         333332 23457788888777543  4555444  4677


Q ss_pred             EEEEecCCCCceeeEecC-----------------CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          285 VKLWDLSNNQPSCIASRN-----------------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       285 i~i~d~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      |.+|++.++....+....                 .+.-......+...+. ++.+|+.|+.|+.||....+..
T Consensus      1267 vs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~-~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1267 VSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG-FLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             eeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc-eeeecCCccceeeccCCCcccc
Confidence            999999987643332222                 1111122223333334 6889999999999999876554

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.72  E-value=7.8e-15  Score=112.39  Aligned_cols=295  Identities=14%  Similarity=0.103  Sum_probs=192.4

Q ss_pred             cEEEEEEecCCC-------ceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCc-eEEecCCCCeEEE
Q 018293            8 AVIVCARNEDDV-------SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVGSMEPAIEI   79 (358)
Q Consensus         8 ~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~v   79 (358)
                      ++|++|...=+.       +..++++|+..+.+...+.. -...-.+..+.+.|...    -.+|. .|+-+-.+|.|.+
T Consensus        25 ~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~-~q~~dts~~~dm~w~~~----~~~g~~~l~~a~a~G~i~~   99 (339)
T KOG0280|consen   25 NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDT-LQCTDTSTEFDMLWRIR----ETDGDFNLLDAHARGQIQL   99 (339)
T ss_pred             ceEEEeeEEecCCCCchheeccceEEEeecccccCccce-eeeecccccceeeeeec----cCCccceeeeccccceEEE
Confidence            467777543222       23467777776643322111 11222344556777432    23444 5677778899999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce--
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC--  157 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--  157 (358)
                      |..+.........-+                     ....-......++.|++. +..++++..+|.+.+-+......  
T Consensus       100 ~r~~~~~ss~~L~~l---------------------s~~ki~~~~~lslD~~~~-~~~i~vs~s~G~~~~v~~t~~~le~  157 (339)
T KOG0280|consen  100 YRNDEDESSVHLRGL---------------------SSKKISVVEALSLDISTS-GTKIFVSDSRGSISGVYETEMVLEK  157 (339)
T ss_pred             Eeeccceeeeeeccc---------------------chhhhhheeeeEEEeecc-CceEEEEcCCCcEEEEecceeeeee
Confidence            987643221110000                     000001113567888888 56788999999999766555533  


Q ss_pred             eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC-cc-ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEE
Q 018293          158 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG  235 (358)
Q Consensus       158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i  235 (358)
                      ++.++.|.-++....|+...++++.+|+.|+.+..||+|.... +. ....|...|.++.-+|..+.++++|+.|..|++
T Consensus       158 vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~  237 (339)
T KOG0280|consen  158 VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRV  237 (339)
T ss_pred             cccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceee
Confidence            4578999999999999998889999999999999999994442 22 134578899999999988899999999999999


Q ss_pred             EEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce---eeEecCCCCceeEEEE
Q 018293          236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS---CIASRNPKAGAVFSVA  312 (358)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~v~~~~  312 (358)
                      ||.|+-.        ++++.-.. .+.|..+.++|.....++.++.-.-.+|.+.+.....   .......|.+-...-.
T Consensus       238 ~DtRnm~--------kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~D  308 (339)
T KOG0280|consen  238 LDTRNMG--------KPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGD  308 (339)
T ss_pred             eehhccc--------CccccCcc-ccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccc
Confidence            9999752        44444332 3789999999965444455455455778887765433   3444556666666677


Q ss_pred             EcCCCCeEEEEEc-cCCeEE-EEEccCCC
Q 018293          313 FSEDSPFVLAIGG-SKGKLE-IWDTLSDA  339 (358)
Q Consensus       313 ~~~~~~~~l~~~~-~dg~i~-vw~~~~~~  339 (358)
                      |..... ++|+++ .|+.++ +|-..+++
T Consensus       309 Wd~~~~-~lATCsFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  309 WDSKDS-FLATCSFYDKKIRQLWLHITGE  336 (339)
T ss_pred             cccccc-eeeeeeccccceeeeeeeccCC
Confidence            754434 477765 677655 77666554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=7.9e-15  Score=127.13  Aligned_cols=213  Identities=15%  Similarity=0.029  Sum_probs=132.0

Q ss_pred             CccccCCCceEEecC---CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293           58 PLKDREKGNFMAVGS---MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF  134 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~---~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  134 (358)
                      +++|||||+.|+..+   .+..|.+|++.+++...                         ...   ..+.+....|+|+|
T Consensus       203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-------------------------l~~---~~~~~~~~~~SPDG  254 (429)
T PRK03629        203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-------------------------VAS---FPRHNGAPAFSPDG  254 (429)
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-------------------------ccC---CCCCcCCeEECCCC
Confidence            345599999998653   34578999987543211                         111   22234467999996


Q ss_pred             CcEEEEEEcCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEe-CCCcEEEE--EcccCCCccceeeecC
Q 018293          135 RNILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMK--DARISTHSGFKWAVAA  209 (358)
Q Consensus       135 ~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~  209 (358)
                      ..++++.+.+|  .|.+||+++++...... +...+....|+|++ +.|+..+ .++...+|  |+.+++... ......
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~-~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~~  331 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEGS  331 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEEccC-CCCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCeEE-eecCCC
Confidence            54555555555  58899998886544333 44567889999999 5555444 44555555  555443322 222334


Q ss_pred             CeeeEEEcCCCCCeEEEEecC--CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc---
Q 018293          210 DVESLAWDPHAEHSFVVSLED--GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM---  284 (358)
Q Consensus       210 ~i~~~~~~~~~~~~~~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~---  284 (358)
                      ......|+|++..+++++..+  ..|.+||+.++.          ...+.. ........|+||| .+|+.++.++.   
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~----------~~~Lt~-~~~~~~p~~SpDG-~~i~~~s~~~~~~~  399 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------VQVLTD-TFLDETPSIAPNG-TMVIYSSSQGMGSV  399 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCceEEEEECCCCC----------eEEeCC-CCCCCCceECCCC-CEEEEEEcCCCceE
Confidence            456789999776544544443  358888987652          122221 1223467899999 77777776654   


Q ss_pred             EEEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293          285 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       285 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                      +.++++....   ...+..|.+.+...+|+|-
T Consensus       400 l~~~~~~G~~---~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        400 LNLVSTDGRF---KARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             EEEEECCCCC---eEECccCCCCcCCcccCCC
Confidence            6777775544   4445567778888899873

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.72  E-value=2.4e-13  Score=114.74  Aligned_cols=276  Identities=15%  Similarity=0.169  Sum_probs=168.7

Q ss_pred             CceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCC----CCeEEEEEcccc-cCcCceee
Q 018293           19 VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM----EPAIEIWDLDVI-DEVQPHVI   93 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~----dg~i~vw~~~~~-~~~~~~~~   93 (358)
                      .+.|.++.++...+   .+...........|..+       +++|++++|.+...    +|.|..|+++.. ..+..   
T Consensus        12 ~~gI~~~~~d~~~g---~l~~~~~~~~~~~Ps~l-------~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~---   78 (345)
T PF10282_consen   12 GGGIYVFRFDEETG---TLTLVQTVAEGENPSWL-------AVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL---   78 (345)
T ss_dssp             STEEEEEEEETTTT---EEEEEEEEEESSSECCE-------EE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE---
T ss_pred             CCcEEEEEEcCCCC---CceEeeeecCCCCCceE-------EEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE---
Confidence            35566666666665   44433333233333333       33899999988766    579999998753 11111   


Q ss_pred             cCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE-EcCCeEEEEECCC-Cceeee---ec------
Q 018293           94 LGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA-SADKQVKIWDVAA-GKCNLT---LE------  162 (358)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg~v~iwd~~~-~~~~~~---~~------  162 (358)
                                           .............++++|++. +|+++ ..+|.|.++++.. +.....   +.      
T Consensus        79 ---------------------~~~~~~~g~~p~~i~~~~~g~-~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~  136 (345)
T PF10282_consen   79 ---------------------LNSVPSGGSSPCHIAVDPDGR-FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGP  136 (345)
T ss_dssp             ---------------------EEEEEESSSCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEES
T ss_pred             ---------------------eeeeccCCCCcEEEEEecCCC-EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCC
Confidence                                 111111334567889999955 55555 4689999999986 433222   21      


Q ss_pred             ----ccccceeeEEEcCCCCcEEEEE-eCCCcEEEEEcccCCC-cc----ceeeecCCeeeEEEcCCCCCeEEEEecCCe
Q 018293          163 ----HHTDKVQAVAWNHHSPQILLSG-SFDRSVVMKDARISTH-SG----FKWAVAADVESLAWDPHAEHSFVVSLEDGT  232 (358)
Q Consensus       163 ----~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~-~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~  232 (358)
                          .......++.|+|++ +++++. -....|.+|++..... +.    ...........+.|+|++...+++.-.++.
T Consensus       137 ~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~  215 (345)
T PF10282_consen  137 NPDRQEGPHPHQVVFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNT  215 (345)
T ss_dssp             STTTTSSTCEEEEEE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred             cccccccccceeEEECCCC-CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCc
Confidence                123456789999999 555554 4456899999977652 21    122345668899999977766666777899


Q ss_pred             EEEEEcccCCCCCCCCCCCccEEEeec------CCceeEEEecCCCCcEEEE-EeCCCcEEEEecC--CCCceeeEecCC
Q 018293          233 IKGFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPNLLAT-GSTDKMVKLWDLS--NNQPSCIASRNP  303 (358)
Q Consensus       233 i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~~l~~-~~~dg~i~i~d~~--~~~~~~~~~~~~  303 (358)
                      |.+|++......     ..........      ......|+++|++ ++|++ ....+.|.+|++.  +++...+.....
T Consensus       216 v~v~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~i~ispdg-~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~  289 (345)
T PF10282_consen  216 VSVFDYDPSDGS-----LTEIQTISTLPEGFTGENAPAEIAISPDG-RFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT  289 (345)
T ss_dssp             EEEEEEETTTTE-----EEEEEEEESCETTSCSSSSEEEEEE-TTS-SEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE
T ss_pred             EEEEeecccCCc-----eeEEEEeeeccccccccCCceeEEEecCC-CEEEEEeccCCEEEEEEEecCCCceEEEEEEeC
Confidence            999999832110     0122222211      1257889999999 55555 4457789999993  345444444433


Q ss_pred             CCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          304 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       304 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      .......++++|+|++++++.-.++.|.+|++.
T Consensus       290 ~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  290 GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            334478999999999877777788899999885

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.72  E-value=5.8e-17  Score=125.88  Aligned_cols=233  Identities=16%  Similarity=0.229  Sum_probs=162.9

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      .|||+|+++|+++.- .+.|-|..+.+..+-+.                            --+.|.-+.|..+....|.
T Consensus        15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~----------------------------cldki~yieW~ads~~ilC   65 (447)
T KOG4497|consen   15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL----------------------------CLDKIVYIEWKADSCHILC   65 (447)
T ss_pred             eECCCCCeeeeeeee-EEEEeccchhhHHHHHH----------------------------HHHHhhheeeeccceeeee
Confidence            469999999999865 77788887655443222                            2356888899988666677


Q ss_pred             EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293          140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  219 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  219 (358)
                      ....|+.|.+|++...+-...+.....++.+++|+|+|..++.+...+-.|.+|.+.+..... ..-....+..++|+|+
T Consensus        66 ~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~d  144 (447)
T KOG4497|consen   66 VAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPD  144 (447)
T ss_pred             eeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCC
Confidence            778899999999998888888988889999999999998888888999999999998876544 2223345688999996


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  299 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  299 (358)
                      +. +.+..+.-.....+.+...      .....+..+...+-..+.+.|+||| +.|+         +||-.-.-  .+.
T Consensus       145 g~-f~ai~sRrDCkdyv~i~~c------~~W~ll~~f~~dT~DltgieWsPdg-~~la---------Vwd~~Ley--kv~  205 (447)
T KOG4497|consen  145 GQ-FCAILSRRDCKDYVQISSC------KAWILLKEFKLDTIDLTGIEWSPDG-NWLA---------VWDNVLEY--KVY  205 (447)
T ss_pred             Cc-eeeeeecccHHHHHHHHhh------HHHHHHHhcCCCcccccCceECCCC-cEEE---------Eecchhhh--eee
Confidence            54 5555543221111111110      0013344455555667899999998 6655         45533221  111


Q ss_pred             ecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          300 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       300 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      ..+ -.-.+..+.|+|.++ +++.|+.|+.+++.+--+.+...+
T Consensus       206 aYe-~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~e  247 (447)
T KOG4497|consen  206 AYE-RGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGE  247 (447)
T ss_pred             eee-eccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhh
Confidence            111 123577899999999 599999999999988777665544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=9.9e-15  Score=127.09  Aligned_cols=212  Identities=15%  Similarity=0.091  Sum_probs=129.8

Q ss_pred             CccccCCCceEEecCCC---CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293           58 PLKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF  134 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  134 (358)
                      +++|+|||+.|+..+.+   ..|++||+.+++...                            +..+.+...+.+|+|+|
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~----------------------------l~~~~g~~~~~~~SpDG  259 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL----------------------------VASFRGINGAPSFSPDG  259 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE----------------------------eccCCCCccCceECCCC
Confidence            44569999999887643   469999987543211                            11223344578999996


Q ss_pred             CcEEEEEEcCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEe-CCCc--EEEEEcccCCCccceeeecC
Q 018293          135 RNILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRS--VVMKDARISTHSGFKWAVAA  209 (358)
Q Consensus       135 ~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~  209 (358)
                      ..++++.+.+|  .|.+||+.+++.. .+..+.......+|+|++ +.++.++ .+|.  |.++|+.+++... ......
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~  336 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGN  336 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCeEE-eecCCC
Confidence            65556666666  5999999887653 444455556778999999 5555444 5555  5556665554322 222233


Q ss_pred             CeeeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC-C--Cc
Q 018293          210 DVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-D--KM  284 (358)
Q Consensus       210 ~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-d--g~  284 (358)
                      .....+|+|++..++++...++  .|.+||+.++.         .. .+. +........|+|+| ++++..+. .  +.
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~---------~~-~Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~  404 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS---------VR-TLT-PGSLDESPSFAPNG-SMVLYATREGGRGV  404 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCceeEEEEECCCCC---------eE-ECC-CCCCCCCceECCCC-CEEEEEEecCCceE
Confidence            4557899997764444433333  68999987652         11 222 22234567899999 55554443 2  34


Q ss_pred             EEEEecCCCCceeeEecCCCCceeEEEEEcC
Q 018293          285 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSE  315 (358)
Q Consensus       285 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  315 (358)
                      |.++++....   ...+..+.+.+...+|+|
T Consensus       405 L~~~~~~g~~---~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        405 LAAVSTDGRV---RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EEEEECCCCc---eEEcccCCCCCCCCccCC
Confidence            7778875543   333444455667777876

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=4.4e-14  Score=111.59  Aligned_cols=151  Identities=15%  Similarity=0.160  Sum_probs=118.5

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE--
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA--  141 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~--  141 (358)
                      +.++|+++-.+ .|+|||+...+.+..+...                        ..+...+.++++++. +.++|--  
T Consensus        96 Nr~RLvV~Lee-~IyIydI~~MklLhTI~t~------------------------~~n~~gl~AlS~n~~-n~ylAyp~s  149 (391)
T KOG2110|consen   96 NRKRLVVCLEE-SIYIYDIKDMKLLHTIETT------------------------PPNPKGLCALSPNNA-NCYLAYPGS  149 (391)
T ss_pred             ccceEEEEEcc-cEEEEecccceeehhhhcc------------------------CCCccceEeeccCCC-CceEEecCC
Confidence            45677777655 4999999876665543221                        136677888888887 4466543  


Q ss_pred             EcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCc-EEEEEcccCCCccceee--ecCCeeeEEEcC
Q 018293          142 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS-VVMKDARISTHSGFKWA--VAADVESLAWDP  218 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~  218 (358)
                      ...|.|.+||..+-+.+..+..|.+++.+++|+++| .++++++..|+ |+++.+..++.......  ....|.+++|+|
T Consensus       150 ~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~  228 (391)
T KOG2110|consen  150 TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP  228 (391)
T ss_pred             CCCceEEEEEcccceeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence            235899999999999999999999999999999999 99999999997 78999988877654332  235688999999


Q ss_pred             CCCCeEEEEecCCeEEEEEcccCC
Q 018293          219 HAEHSFVVSLEDGTIKGFDIRTAK  242 (358)
Q Consensus       219 ~~~~~~~~~~~dg~i~i~d~~~~~  242 (358)
                      + ..++++.+..++|.+|.+....
T Consensus       229 d-s~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  229 D-SQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             C-CCeEEEecCCCeEEEEEecccc
Confidence            5 4588899999999999998754

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=2.3e-14  Score=124.25  Aligned_cols=205  Identities=11%  Similarity=0.101  Sum_probs=127.0

Q ss_pred             CCcccEEEEecCCCCCcEEEEEE---cCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC--cEEEEE
Q 018293          120 SHTDSVLGLAWNKEFRNILASAS---ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD  194 (358)
Q Consensus       120 ~h~~~v~~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d  194 (358)
                      .+...+...+|+|+| +.|+..+   .+..+.+|++.+++... +......+....|+|+|..++++.+.+|  .|.+||
T Consensus       196 ~~~~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d  273 (429)
T PRK03629        196 RSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD  273 (429)
T ss_pred             cCCCceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence            356689999999995 4555443   23579999998875433 2223334557899999944444555555  488899


Q ss_pred             cccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEE--EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293          195 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF--DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  272 (358)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  272 (358)
                      +.+++... .......+....|+|++..++++...++...+|  |+..+          ....+..+........|+|+|
T Consensus       274 ~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g----------~~~~lt~~~~~~~~~~~SpDG  342 (429)
T PRK03629        274 LASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG----------APQRITWEGSQNQDADVSSDG  342 (429)
T ss_pred             CCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC----------CeEEeecCCCCccCEEECCCC
Confidence            98765443 233345678899999766555555555555555  44433          223333334445678999999


Q ss_pred             CcEEEEEeC-C--CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCe---EEEEEccCCCccccc
Q 018293          273 PNLLATGST-D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK---LEIWDTLSDAGISNR  344 (358)
Q Consensus       273 ~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~---i~vw~~~~~~~~~~~  344 (358)
                       ++|+..+. +  ..|.+||+.+++...+.  ..  .......|+|||++ ++.++.++.   +.++++. |....++
T Consensus       343 -~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt--~~--~~~~~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~-G~~~~~l  413 (429)
T PRK03629        343 -KFMVMVSSNGGQQHIAKQDLATGGVQVLT--DT--FLDETPSIAPNGTM-VIYSSSQGMGSVLNLVSTD-GRFKARL  413 (429)
T ss_pred             -CEEEEEEccCCCceEEEEECCCCCeEEeC--CC--CCCCCceECCCCCE-EEEEEcCCCceEEEEEECC-CCCeEEC
Confidence             56555443 3  34888999888643222  11  12346789999996 555555543   6777773 4444443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1.8e-14  Score=125.57  Aligned_cols=203  Identities=12%  Similarity=0.082  Sum_probs=133.1

Q ss_pred             CCcccEEEEecCCCCCcEEEEEEc---CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCc--EEEEE
Q 018293          120 SHTDSVLGLAWNKEFRNILASASA---DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKD  194 (358)
Q Consensus       120 ~h~~~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d  194 (358)
                      .|...+.+.+|+|+| +.|+..+.   +..|.+||+.+++.. .+..+.+.+....|+|+|..++++.+.++.  |.+||
T Consensus       199 ~~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  276 (435)
T PRK05137        199 DGSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD  276 (435)
T ss_pred             cCCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence            577889999999995 56665543   468999999888653 344456677889999999555566676665  66778


Q ss_pred             cccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293          195 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  272 (358)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  272 (358)
                      +.++.... ...+........|+|++..++++...+|  .|+++|+..+          ....+..+...+....|+|+|
T Consensus       277 ~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~----------~~~~lt~~~~~~~~~~~SpdG  345 (435)
T PRK05137        277 LRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS----------NPRRISFGGGRYSTPVWSPRG  345 (435)
T ss_pred             CCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC----------CeEEeecCCCcccCeEECCCC
Confidence            87665433 3334445677899997765555554444  5777776643          223333344556778999999


Q ss_pred             CcEEEEEeCC---CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC-----CeEEEEEccCCCc
Q 018293          273 PNLLATGSTD---KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDAG  340 (358)
Q Consensus       273 ~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~  340 (358)
                       +.|+..+.+   ..|.+||+.++..   ..+.. ...+....|+|||+.++++....     ..+.++|+..+..
T Consensus       346 -~~ia~~~~~~~~~~i~~~d~~~~~~---~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        346 -DLIAFTKQGGGQFSIGVMKPDGSGE---RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             -CEEEEEEcCCCceEEEEEECCCCce---EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence             666554433   3588888866542   12221 22466789999999765555433     2578888865443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=3.2e-14  Score=123.49  Aligned_cols=200  Identities=16%  Similarity=0.162  Sum_probs=126.7

Q ss_pred             CCcccEEEEecCCCCCcEEEEEEcC---CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 018293          120 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  196 (358)
Q Consensus       120 ~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  196 (358)
                      .+...+.+.+|+|+| +.|+..+.+   ..|.+||+.+++... +......+....|+|++..++++.+.+|...+|.+.
T Consensus       193 ~~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  270 (427)
T PRK02889        193 SSPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN  270 (427)
T ss_pred             cCCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence            466788999999995 566655532   359999999886543 333345567899999995555567888887776654


Q ss_pred             --cCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc
Q 018293          197 --ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  274 (358)
Q Consensus       197 --~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  274 (358)
                        .+.. .....+........|+|++..+++++..+|...+|.+....        .....+..+........|+|+| +
T Consensus       271 ~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~--------g~~~~lt~~g~~~~~~~~SpDG-~  340 (427)
T PRK02889        271 ADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG--------GAAQRVTFTGSYNTSPRISPDG-K  340 (427)
T ss_pred             CCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC--------CceEEEecCCCCcCceEECCCC-C
Confidence              3332 22223344456789999877555565556777777765321        1122222222334567899999 6


Q ss_pred             EEEEEeCCC---cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCe--EEEEEc
Q 018293          275 LLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDT  335 (358)
Q Consensus       275 ~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~vw~~  335 (358)
                      +|+..+.++   .|.+||+.+++...+   ... .......|+|||++++++....|.  +.+.++
T Consensus       341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~l---t~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        341 LLAYISRVGGAFKLYVQDLATGQVTAL---TDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             EEEEEEccCCcEEEEEEECCCCCeEEc---cCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            766655443   599999988764222   221 234578999999976666555544  555555

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.69  E-value=4.9e-15  Score=113.46  Aligned_cols=157  Identities=14%  Similarity=0.280  Sum_probs=105.6

Q ss_pred             eeEEEcCCCCcEEEEEeC---------CCcEEEEEcccCCCc--cceeeecCCeeeEEEcCCCCCeEEE-EecCCeEEEE
Q 018293          169 QAVAWNHHSPQILLSGSF---------DRSVVMKDARISTHS--GFKWAVAADVESLAWDPHAEHSFVV-SLEDGTIKGF  236 (358)
Q Consensus       169 ~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~-~~~dg~i~i~  236 (358)
                      ..+.|+++|..+++....         -+...+|-++.....  .......++|.+++|+|++..++++ |..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            357899999554444441         134556665443322  2222345579999999977654444 4467899999


Q ss_pred             EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC---CCcEEEEecCCCCceeeEecCCCCceeEEEEE
Q 018293          237 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF  313 (358)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~  313 (358)
                      |++.          ..+..+.  ...++.+.|+|+| ++|++++.   .|.|.+||.++.+  .+.... | ..++.++|
T Consensus        89 d~~~----------~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~--~i~~~~-~-~~~t~~~W  151 (194)
T PF08662_consen   89 DVKG----------KKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKK--KISTFE-H-SDATDVEW  151 (194)
T ss_pred             cCcc----------cEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCE--Eeeccc-c-CcEEEEEE
Confidence            9962          4555553  4677899999999 78887764   4679999999766  343333 3 34789999


Q ss_pred             cCCCCeEEEEEcc-----CCeEEEEEccCCCcccc
Q 018293          314 SEDSPFVLAIGGS-----KGKLEIWDTLSDAGISN  343 (358)
Q Consensus       314 ~~~~~~~l~~~~~-----dg~i~vw~~~~~~~~~~  343 (358)
                      +|+|++++.+.+.     |+.++||+.. |+.+.+
T Consensus       152 sPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  152 SPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             cCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence            9999985544443     7889999985 555543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=2.8e-14  Score=124.28  Aligned_cols=200  Identities=17%  Similarity=0.164  Sum_probs=127.7

Q ss_pred             CCcccEEEEecCCCCCcEEEEEEcC---CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC--cEEEEE
Q 018293          120 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD  194 (358)
Q Consensus       120 ~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d  194 (358)
                      .+...+.+.+|+|+ ++.|+..+.+   ..|.+||+.+++... +........+..|+|+|..++++.+.+|  .|++||
T Consensus       201 ~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d  278 (433)
T PRK04922        201 RSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMD  278 (433)
T ss_pred             cCCCccccccCCCC-CCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence            46678999999999 5566666533   469999998876533 3333445567899999955556666666  589999


Q ss_pred             cccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCe--EEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293          195 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  272 (358)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  272 (358)
                      +.+++... ...+.......+|+|++..++++...+|.  |+++|+.++         . ...+..+.......+|+|+|
T Consensus       279 ~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g---------~-~~~lt~~g~~~~~~~~SpDG  347 (433)
T PRK04922        279 LGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG---------S-AERLTFQGNYNARASVSPDG  347 (433)
T ss_pred             CCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---------C-eEEeecCCCCccCEEECCCC
Confidence            98766433 23333445678999976655555555555  555555543         1 22222233344578999999


Q ss_pred             CcEEEEEeCC-C--cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC--CeEEEEEccC
Q 018293          273 PNLLATGSTD-K--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLS  337 (358)
Q Consensus       273 ~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vw~~~~  337 (358)
                       +.|+..+.+ +  .|.+||+.+++..   .+. +........|+|||++++++....  +.|.++++..
T Consensus       348 -~~Ia~~~~~~~~~~I~v~d~~~g~~~---~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        348 -KKIAMVHGSGGQYRIAVMDLSTGSVR---TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             -CEEEEEECCCCceeEEEEECCCCCeE---ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence             666654433 2  5999999887643   222 122345679999999766555433  3577777754

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.68  E-value=7.6e-15  Score=116.64  Aligned_cols=214  Identities=13%  Similarity=0.140  Sum_probs=158.0

Q ss_pred             CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293           65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  144 (358)
Q Consensus        65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  144 (358)
                      ...|++|-.+|.+++|....+.....                       ....+. -...+..+.-++.....+++|+..
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss-----------------------~l~~la-~g~g~~~~r~~~~~p~Iva~GGke  170 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSS-----------------------KLIKLA-TGPGLYDVRQTDTDPYIVATGGKE  170 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccc-----------------------cceeee-cCCceeeeccCCCCCceEecCchh
Confidence            34677888899999999875443211                       011111 125567777777767788889999


Q ss_pred             --CeEEEEECCCCceeeeeccc---------ccceeeEEEcCC--CCcEEEEEeCCCcEEEEEcccCCCccce-eeecCC
Q 018293          145 --KQVKIWDVAAGKCNLTLEHH---------TDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTHSGFK-WAVAAD  210 (358)
Q Consensus       145 --g~v~iwd~~~~~~~~~~~~~---------~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~  210 (358)
                        ..+.+||++..+.+.+-+.-         .-.++++.|.+.  . ..|++++.-+.+++||.+.++..... .-.+.+
T Consensus       171 ~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~  249 (412)
T KOG3881|consen  171 NINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPVAQFDFLENP  249 (412)
T ss_pred             cccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcceeEeccccCc
Confidence              89999999988655544321         124577888876  4 78999999999999999976654333 345788


Q ss_pred             eeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEec
Q 018293          211 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  290 (358)
Q Consensus       211 i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~  290 (358)
                      ++++...| +++.+++|..-|.+..||++.++        .....+.+..+.|+++..+|.. .++++++-|..++|+|+
T Consensus       250 is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~k--------l~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  250 ISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGK--------LLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDI  319 (412)
T ss_pred             ceeeeecC-CCcEEEEecccchhheecccCce--------eeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeec
Confidence            99999999 56799999999999999999872        2333477888999999999987 89999999999999999


Q ss_pred             CCCCceeeEecCCCCceeEEEEEcCC
Q 018293          291 SNNQPSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       291 ~~~~~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                      .+.+++.....   ...++++-+.++
T Consensus       320 ktrkll~kvYv---Ks~lt~il~~~~  342 (412)
T KOG3881|consen  320 KTRKLLHKVYV---KSRLTFILLRDD  342 (412)
T ss_pred             ccchhhhhhhh---hccccEEEecCC
Confidence            99764332222   234666666543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=5.3e-14  Score=122.73  Aligned_cols=213  Identities=12%  Similarity=0.072  Sum_probs=131.8

Q ss_pred             CccccCCCceEEecCC---CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293           58 PLKDREKGNFMAVGSM---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF  134 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  134 (358)
                      +++|+|||+.|+..+.   +..|++||+.+++..                            .+..+.+.+...+|+|+|
T Consensus       206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----------------------------~l~~~~g~~~~~~~SPDG  257 (435)
T PRK05137        206 TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----------------------------LVGNFPGMTFAPRFSPDG  257 (435)
T ss_pred             eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----------------------------EeecCCCcccCcEECCCC
Confidence            3445999999887653   468999999754321                            112345567788999996


Q ss_pred             CcEEEEEEcCCe--EEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEe-CCC--cEEEEEcccCCCccceeeecC
Q 018293          135 RNILASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDR--SVVMKDARISTHSGFKWAVAA  209 (358)
Q Consensus       135 ~~~l~s~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~  209 (358)
                      ..++++.+.++.  |.+||+.+++. ..+..+........|+|++ +.++..+ .+|  .|.++|+..++... ......
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~  334 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGG  334 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCeEE-eecCCC
Confidence            656667776665  77778887765 4455466667789999999 5555544 444  57777876554433 222345


Q ss_pred             CeeeEEEcCCCCCeEEEEecC--CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC-----
Q 018293          210 DVESLAWDPHAEHSFVVSLED--GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD-----  282 (358)
Q Consensus       210 ~i~~~~~~~~~~~~~~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-----  282 (358)
                      .+....|+|++..++++....  ..|.+||+...         . ...+. ....+..+.|+|+|..++++....     
T Consensus       335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~---------~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~  403 (435)
T PRK05137        335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS---------G-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGA  403 (435)
T ss_pred             cccCeEECCCCCEEEEEEcCCCceEEEEEECCCC---------c-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCc
Confidence            567789999776444444333  36778887543         1 12221 223467789999994334444333     


Q ss_pred             CcEEEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293          283 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       283 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                      ..+.++|+..+..   ..+. ..+.+...+|+|-
T Consensus       404 ~~L~~~dl~g~~~---~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        404 PKLYTVDLTGRNE---REVP-TPGDASDPAWSPL  433 (435)
T ss_pred             ceEEEEECCCCce---EEcc-CCCCccCcccCCC
Confidence            2578888876653   2222 2334566677763

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2.3e-15  Score=122.90  Aligned_cols=255  Identities=19%  Similarity=0.234  Sum_probs=184.4

Q ss_pred             ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC-CcE
Q 018293           59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNI  137 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~  137 (358)
                      +.|+..|..|++|+.|..|.+||........                          ....+|...|..-.|-|.. ..-
T Consensus       148 V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l--------------------------~f~SGH~~NvfQaKFiP~s~d~t  201 (559)
T KOG1334|consen  148 VHFNQRGDVLASGSDDLQVVVWDWVSGSPKL--------------------------SFESGHCNNVFQAKFIPFSGDRT  201 (559)
T ss_pred             eeecccCceeeccCccceEEeehhhccCccc--------------------------ccccccccchhhhhccCCCCCcC
Confidence            4568999999999999999999997544332                          2334799999988888753 347


Q ss_pred             EEEEEcCCeEEEEECCC-Cce--eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee---ecC--
Q 018293          138 LASASADKQVKIWDVAA-GKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAA--  209 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~--  209 (358)
                      +++++.||.|++=.+.. +.+  ...+..|.++|.-++.-|+.+..|.+++.|+.+.-+|++..........   ...  
T Consensus       202 i~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~  281 (559)
T KOG1334|consen  202 IVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER  281 (559)
T ss_pred             ceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence            89999999999877643 222  3455679999999999999999999999999999999998765432221   122  


Q ss_pred             -CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE------eecCCceeEEEecCCCCcEEEEEeCC
Q 018293          210 -DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL------HAHDKAVCTISYNPLVPNLLATGSTD  282 (358)
Q Consensus       210 -~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------~~~~~~i~~i~~~~~~~~~l~~~~~d  282 (358)
                       ....++.+|.+.+.+++|+.|-.+++||.+.........   .+..+      ......|++++++.++..+| +.-.|
T Consensus       282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~---~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL-aSYnD  357 (559)
T KOG1334|consen  282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG---VLDKFCPHHLVEDDPVNITGLVYSHDGSELL-ASYND  357 (559)
T ss_pred             eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc---hhhhcCCccccccCcccceeEEecCCcccee-eeecc
Confidence             467899999888899999999999999998764322111   11111      12345699999998874554 45567


Q ss_pred             CcEEEEecCCCCc-----------eeeEecCCCCc--eeEEEEE-cCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          283 KMVKLWDLSNNQP-----------SCIASRNPKAG--AVFSVAF-SEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       283 g~i~i~d~~~~~~-----------~~~~~~~~~~~--~v~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      -.|+++.-..+..           .....+.+|..  .|..+-| -|..+| +++|+.=|.|.||+-.+++.+.-+
T Consensus       358 e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy-VvSGSDCGhIFiW~K~t~eii~~M  432 (559)
T KOG1334|consen  358 EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY-VVSGSDCGHIFIWDKKTGEIIRFM  432 (559)
T ss_pred             cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce-EEecCccceEEEEecchhHHHHHh
Confidence            7899995443221           11222556643  4666655 577775 888998899999999888876533

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=3.1e-14  Score=123.54  Aligned_cols=214  Identities=13%  Similarity=0.065  Sum_probs=126.2

Q ss_pred             CccccCCCceEEecCCC---CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293           58 PLKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF  134 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  134 (358)
                      +++|||||+.|+..+.+   ..|.+||+.+++...                            +....+.+.+.+|+|+|
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----------------------------l~~~~g~~~~~~~SPDG  251 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----------------------------VANFKGSNSAPAWSPDG  251 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----------------------------eecCCCCccceEECCCC
Confidence            34559999999876643   469999997543211                            11123445688999996


Q ss_pred             CcEEEEEEcCCeEEEEEC--CCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc--cCCCccceeeecCC
Q 018293          135 RNILASASADKQVKIWDV--AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR--ISTHSGFKWAVAAD  210 (358)
Q Consensus       135 ~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~  210 (358)
                      ..++++.+.+|...+|.+  ..+. ...+..+........|+|+|..+++++..+|...+|.+.  ++.... .......
T Consensus       252 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~  329 (427)
T PRK02889        252 RTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSY  329 (427)
T ss_pred             CEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCC
Confidence            555557788888777654  4443 445554555567789999994444444455677777654  332222 1112233


Q ss_pred             eeeEEEcCCCCCeEEEEecCC---eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc--E
Q 018293          211 VESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--V  285 (358)
Q Consensus       211 i~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--i  285 (358)
                      .....|+|++. .++..+.++   .|.+||+.++.         . ..+.. ........|+|++..++++....|.  +
T Consensus       330 ~~~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~---------~-~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l  397 (427)
T PRK02889        330 NTSPRISPDGK-LLAYISRVGGAFKLYVQDLATGQ---------V-TALTD-TTRDESPSFAPNGRYILYATQQGGRSVL  397 (427)
T ss_pred             cCceEECCCCC-EEEEEEccCCcEEEEEEECCCCC---------e-EEccC-CCCccCceECCCCCEEEEEEecCCCEEE
Confidence            45678999766 555444333   69999997752         1 12221 1234678999999444444444443  5


Q ss_pred             EEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293          286 KLWDLSNNQPSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       286 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                      .+.++....   ...+..+.+.+...+|+|-
T Consensus       398 ~~~~~~g~~---~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        398 AAVSSDGRI---KQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEEECCCCc---eEEeecCCCCCCCCccCCC
Confidence            555663322   2333345566777788874

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=4.8e-14  Score=117.57  Aligned_cols=196  Identities=16%  Similarity=0.246  Sum_probs=144.3

Q ss_pred             EEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee
Q 018293          126 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  205 (358)
Q Consensus       126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  205 (358)
                      ..++++.-...++ .++....|.-++++.|..+..+......++++..++-. .+|++|+.+|.|.+||.++........
T Consensus       137 RDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~  214 (703)
T KOG2321|consen  137 RDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLD  214 (703)
T ss_pred             ccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhheeee
Confidence            3444443323344 44445678889999999998888777899999999988 899999999999999999876543222


Q ss_pred             e------e-----cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC-
Q 018293          206 A------V-----AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP-  273 (358)
Q Consensus       206 ~------~-----~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-  273 (358)
                      .      +     ...|+++.|+.+ +-.+++|+.+|.+.|||++..+        ..+..-++..-+|..+.|.+.+. 
T Consensus       215 ~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGts~G~v~iyDLRa~~--------pl~~kdh~~e~pi~~l~~~~~~~q  285 (703)
T KOG2321|consen  215 AASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGTSTGSVLIYDLRASK--------PLLVKDHGYELPIKKLDWQDTDQQ  285 (703)
T ss_pred             cccccCCCccccccCcceEEEecCC-ceeEEeeccCCcEEEEEcccCC--------ceeecccCCccceeeecccccCCC
Confidence            1      1     124999999984 6689999999999999999872        22333344467899999987643 


Q ss_pred             cEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          274 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       274 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ..+++ .....++|||-.++++...  .. ....++.+++-|++. ++.++-.++.+..|=+..
T Consensus       286 ~~v~S-~Dk~~~kiWd~~~Gk~~as--iE-pt~~lND~C~~p~sG-m~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  286 NKVVS-MDKRILKIWDECTGKPMAS--IE-PTSDLNDFCFVPGSG-MFFTANESSKMHTYYIPS  344 (703)
T ss_pred             ceEEe-cchHHhhhcccccCCceee--cc-ccCCcCceeeecCCc-eEEEecCCCcceeEEccc
Confidence            34444 4456799999999985333  33 235599999999988 688888888887776654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=5.5e-14  Score=117.25  Aligned_cols=243  Identities=14%  Similarity=0.176  Sum_probs=163.5

Q ss_pred             cccCCCceE-EecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCc--ccEEEEecCCCCCc
Q 018293           60 KDREKGNFM-AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT--DSVLGLAWNKEFRN  136 (358)
Q Consensus        60 ~~s~~~~~l-~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~  136 (358)
                      ..+|||+|+ |+|..-..|++||+.....-                             +..|.  ..|.-.-.+.| -.
T Consensus        58 k~s~DGqY~lAtG~YKP~ikvydlanLSLK-----------------------------FERhlDae~V~feiLsDD-~S  107 (703)
T KOG2321|consen   58 KVSPDGQYLLATGTYKPQIKVYDLANLSLK-----------------------------FERHLDAEVVDFEILSDD-YS  107 (703)
T ss_pred             EecCCCcEEEEecccCCceEEEEcccceee-----------------------------eeecccccceeEEEeccc-hh
Confidence            348999986 67888999999999642211                             11222  23444444444 44


Q ss_pred             EEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEE
Q 018293          137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW  216 (358)
Q Consensus       137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  216 (358)
                      .++--..|.+|.+... -|.. ..++ -+..-..++++.-... |+.++....|+-++++.+..+.......+.++++..
T Consensus       108 K~v~L~~DR~IefHak-~G~h-y~~R-IP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~i  183 (703)
T KOG2321|consen  108 KSVFLQNDRTIEFHAK-YGRH-YRTR-IPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSI  183 (703)
T ss_pred             hheEeecCceeeehhh-cCee-eeee-cCcCCccccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeee
Confidence            4555566777776542 2211 1111 1233456667655523 555666778888999999888766666789999999


Q ss_pred             cCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecC-----CceeEEEecCCCCcEEEEEeCCCcEEEEecC
Q 018293          217 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-----KAVCTISYNPLVPNLLATGSTDKMVKLWDLS  291 (358)
Q Consensus       217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~  291 (358)
                      ++- ..++++|+.+|.|.+||.+..........   ......|.     ..|+++.|+.+| -.+++|+.+|.+.|||++
T Consensus       184 n~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~---~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLR  258 (703)
T KOG2321|consen  184 NEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDA---ASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLR  258 (703)
T ss_pred             cCc-cceEEecccCceEEEecchhhhhheeeec---ccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcc
Confidence            994 45999999999999999998733211110   01112233     349999999887 899999999999999999


Q ss_pred             CCCceeeEecCCCCceeEEEEEcCCCC-eEEEEEccCCeEEEEEccCCCcccc
Q 018293          292 NNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       292 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      ..++..+. -++..-+|..+.|.+.+. ..+++ .....++|||-.+|+....
T Consensus       259 a~~pl~~k-dh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~as  309 (703)
T KOG2321|consen  259 ASKPLLVK-DHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMAS  309 (703)
T ss_pred             cCCceeec-ccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceee
Confidence            99975543 344567899999977632 23543 4557899999999887643

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.63  E-value=4.8e-15  Score=127.04  Aligned_cols=291  Identities=19%  Similarity=0.297  Sum_probs=203.9

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      +.++|.|+-++.|..-      .+++.+......+..+.||-  .+-..-...|.+     +|.-.+-++....-.-.+|
T Consensus        30 ~si~p~grdi~lAsr~------gl~i~dld~p~~ppr~l~h~--tpw~vad~qws~-----h~a~~~wiVsts~qkaiiw   96 (1081)
T KOG0309|consen   30 VSINPSGRDIVLASRQ------GLYIIDLDDPFTPPRWLHHI--TPWQVADVQWSP-----HPAKPYWIVSTSNQKAIIW   96 (1081)
T ss_pred             eeeccccchhhhhhhc------CeEEEeccCCCCCceeeecc--Ccchhcceeccc-----CCCCceeEEecCcchhhhh
Confidence            3578888888888443      68888888888888888884  233444667754     3444455555445555689


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC-ceee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-KCNL  159 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~  159 (358)
                      ++...                        ........+.+|..+|+.+-|+|.....+++++.|-.+..||+++. .++.
T Consensus        97 nlA~s------------------------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y  152 (1081)
T KOG0309|consen   97 NLAKS------------------------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY  152 (1081)
T ss_pred             hhhcC------------------------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCccee
Confidence            98632                        2234455677999999999999998889999999999999999875 3455


Q ss_pred             eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  238 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~  238 (358)
                      .+..-......++|+-..+. +++.+....|++||.+.+.... ...++...+..++|...-...+.+++.||+|++||.
T Consensus       153 s~~~w~s~asqVkwnyk~p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y  231 (1081)
T KOG0309|consen  153 STSSWRSAASQVKWNYKDPN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDY  231 (1081)
T ss_pred             eeecccccCceeeecccCcc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence            55555566788999988744 5566778889999999876543 344566778888887766667899999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC-cEEEEecCCC--------CceeeEecCCCCceeE
Q 018293          239 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK-MVKLWDLSNN--------QPSCIASRNPKAGAVF  309 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg-~i~i~d~~~~--------~~~~~~~~~~~~~~v~  309 (358)
                      .+...        ..........+|..-++.|-|+.+.+.-...+ .+.+++.++.        .+..+..+.+|...|.
T Consensus       232 ~kSt~--------e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~  303 (1081)
T KOG0309|consen  232 SKSTT--------ESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL  303 (1081)
T ss_pred             ccccc--------ccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHH
Confidence            87632        22223334566777777776644443322222 3334433321        2346888999999888


Q ss_pred             EEEEcCC---------CCeEEEEEccCCeEEEEEccC
Q 018293          310 SVAFSED---------SPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       310 ~~~~~~~---------~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ...|-..         ..+.|++-+.|..+++|-+.+
T Consensus       304 eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  304 EFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             HHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            7777542         245799999999999998864

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.63  E-value=6.5e-12  Score=97.68  Aligned_cols=158  Identities=15%  Similarity=0.210  Sum_probs=116.8

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECC-CCceeeeecccccceeeEEEcCCCCcEEEE--EeCCCcEEEEEccc
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVA-AGKCNLTLEHHTDKVQAVAWNHHSPQILLS--GSFDRSVVMKDARI  197 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~  197 (358)
                      ...+|.++.+.++   .|++.- .+.|.||... +-+.++.+.....+=--++..|.....+++  |-.-|.|++-|+..
T Consensus        93 f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~  168 (346)
T KOG2111|consen   93 FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS  168 (346)
T ss_pred             eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhh
Confidence            5678999999977   455544 5789999987 445555554322222233344433233333  45679999999987


Q ss_pred             CCC--ccceeeecCCeeeEEEcCCCCCeEEEEecCCe-EEEEEcccCCCCCCCCCCCccEEEee--cCCceeEEEecCCC
Q 018293          198 STH--SGFKWAVAADVESLAWDPHAEHSFVVSLEDGT-IKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLV  272 (358)
Q Consensus       198 ~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~  272 (358)
                      .+.  ......|.+.|.|++.+.+ +.++|+++..|+ |+|||..++         ..+..+..  ....|.+++|+|+.
T Consensus       169 ~~~~~p~~I~AH~s~Iacv~Ln~~-Gt~vATaStkGTLIRIFdt~~g---------~~l~E~RRG~d~A~iy~iaFSp~~  238 (346)
T KOG2111|consen  169 TKPNAPSIINAHDSDIACVALNLQ-GTLVATASTKGTLIRIFDTEDG---------TLLQELRRGVDRADIYCIAFSPNS  238 (346)
T ss_pred             cCcCCceEEEcccCceeEEEEcCC-ccEEEEeccCcEEEEEEEcCCC---------cEeeeeecCCchheEEEEEeCCCc
Confidence            765  3556789999999999995 559999999997 899999998         55655543  34679999999998


Q ss_pred             CcEEEEEeCCCcEEEEecCCC
Q 018293          273 PNLLATGSTDKMVKLWDLSNN  293 (358)
Q Consensus       273 ~~~l~~~~~dg~i~i~d~~~~  293 (358)
                       .+|+++++.|++.||.++..
T Consensus       239 -s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  239 -SWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             -cEEEEEcCCCeEEEEEeecC
Confidence             89999999999999998763

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=1.5e-12  Score=113.43  Aligned_cols=206  Identities=14%  Similarity=0.129  Sum_probs=122.9

Q ss_pred             CCcccEEEEecCCCCCcEEEEEE-cCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCc--EEEEE
Q 018293          120 SHTDSVLGLAWNKEFRNILASAS-ADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKD  194 (358)
Q Consensus       120 ~h~~~v~~~~~~~~~~~~l~s~~-~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d  194 (358)
                      .+...+.+..|+|+|. .|+..+ .++  .|.+||+.+++... +...........|+|++..++++.+.+|.  |.++|
T Consensus       215 ~~~~~~~~p~wSPDG~-~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d  292 (448)
T PRK04792        215 RSPEPLMSPAWSPDGR-KLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD  292 (448)
T ss_pred             cCCCcccCceECCCCC-EEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence            3566788999999955 555443 333  58888998876432 22223334578999999555556677775  77778


Q ss_pred             cccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCe--EEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293          195 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  272 (358)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  272 (358)
                      +.+++... ...+.......+|+|++..++++...++.  |.++|+.++         . ...+..........+|+|+|
T Consensus       293 l~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g---------~-~~~Lt~~g~~~~~~~~SpDG  361 (448)
T PRK04792        293 IATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG---------K-VSRLTFEGEQNLGGSITPDG  361 (448)
T ss_pred             CCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---------C-EEEEecCCCCCcCeeECCCC
Confidence            87665433 22334456778999987756566655554  555566544         2 22222222233457899999


Q ss_pred             CcEEEEEeCCCc--EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCe--EEEEEccCCCcccc
Q 018293          273 PNLLATGSTDKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLSDAGISN  343 (358)
Q Consensus       273 ~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~vw~~~~~~~~~~  343 (358)
                      ..++++...++.  |.++|+.+++...+   ... .......|+|+|+.++++...+|.  +++++. ++.....
T Consensus       362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~l---t~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~  431 (448)
T PRK04792        362 RSMIMVNRTNGKFNIARQDLETGAMQVL---TST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKAR  431 (448)
T ss_pred             CEEEEEEecCCceEEEEEECCCCCeEEc---cCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence            444444444443  56678877763222   211 112245799999976666655554  666776 4444333

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.60  E-value=2.8e-13  Score=106.30  Aligned_cols=269  Identities=13%  Similarity=0.200  Sum_probs=167.5

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCC--CceE---eece--------eecCCcccceeeecCCccccCCCce
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGD--PNLY---VHHH--------IIIPAFPLCMAWLDCPLKDREKGNF   67 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~s~~~~~   67 (358)
                      +.|.-.|..|++|...+     +|.+|+......  -+.+   ..|+        ..+...+..++|++-     .+...
T Consensus        31 vef~~~Ge~LatGdkgG-----RVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~-----~n~a~  100 (433)
T KOG1354|consen   31 VEFDHYGERLATGDKGG-----RVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD-----GNLAE  100 (433)
T ss_pred             EEeecccceEeecCCCC-----eEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCC-----CCccE
Confidence            35778899999997776     777776554321  1111   1222        123344567888652     34556


Q ss_pred             EEecCCCCeEEEEEcccccCcCceeecC-Ccccc-----cccccc---cCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           68 MAVGSMEPAIEIWDLDVIDEVQPHVILG-GIDEE-----KKKKKS---KKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        68 l~~g~~dg~i~vw~~~~~~~~~~~~~~~-~~~~~-----~~~~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      ++..+.|.+|++|.+...........+. ..+..     ......   ...........-.+|.--|++|+++.| ...+
T Consensus       101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD-~Et~  179 (433)
T KOG1354|consen  101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD-KETF  179 (433)
T ss_pred             EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc-cceE
Confidence            7777789999999987543322100000 00000     000000   011112222234579999999999999 5455


Q ss_pred             EEEEcCCeEEEEECCCCce---eeeec-----ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc--------
Q 018293          139 ASASADKQVKIWDVAAGKC---NLTLE-----HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--------  202 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~~---~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------  202 (358)
                      +++ .|=.|.+|+++--..   +-.++     ....-|++..|+|...+.++-++..|+|++.|++......        
T Consensus       180 lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe  258 (433)
T KOG1354|consen  180 LSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE  258 (433)
T ss_pred             eec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence            554 578899999874322   11222     2345688999999888899999999999999998432110        


Q ss_pred             --------ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCC-------------
Q 018293          203 --------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-------------  261 (358)
Q Consensus       203 --------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-------------  261 (358)
                              .....-..|..+.|++. ++++++- .--+|++||+...        .+++..++.|..             
T Consensus       259 pedp~~rsffseiIsSISDvKFs~s-GryilsR-Dyltvk~wD~nme--------~~pv~t~~vh~~lr~kLc~lYEnD~  328 (433)
T KOG1354|consen  259 PEDPSSRSFFSEIISSISDVKFSHS-GRYILSR-DYLTVKLWDLNME--------AKPVETYPVHEYLRSKLCSLYENDA  328 (433)
T ss_pred             ccCCcchhhHHHHhhhhhceEEccC-CcEEEEe-ccceeEEEecccc--------CCcceEEeehHhHHHHHHHHhhccc
Confidence                    00112245888999995 4466654 3368999999665        266666666631             


Q ss_pred             --ceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293          262 --AVCTISYNPLVPNLLATGSTDKMVKLWDLSN  292 (358)
Q Consensus       262 --~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~  292 (358)
                        .-..++|+.++ .+++||+....+++|+...
T Consensus       329 IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  329 IFDKFECSWSGND-SYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             hhheeEEEEcCCc-ceEecccccceEEEecCCC
Confidence              12457888877 7999999999999999544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.59  E-value=2.1e-13  Score=104.64  Aligned_cols=204  Identities=18%  Similarity=0.151  Sum_probs=147.6

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      .|++.+..++++..+|.+.+-+...                         .........+.|..+++...|+....+++.
T Consensus       128 D~~~~~~~i~vs~s~G~~~~v~~t~-------------------------~~le~vq~wk~He~E~Wta~f~~~~pnlvy  182 (339)
T KOG0280|consen  128 DISTSGTKIFVSDSRGSISGVYETE-------------------------MVLEKVQTWKVHEFEAWTAKFSDKEPNLVY  182 (339)
T ss_pred             EeeccCceEEEEcCCCcEEEEecce-------------------------eeeeecccccccceeeeeeecccCCCceEE
Confidence            3477888899999999998444332                         112223366789999999999988788999


Q ss_pred             EEEcCCeEEEEECC-CCceeee-ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293          140 SASADKQVKIWDVA-AGKCNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  217 (358)
Q Consensus       140 s~~~dg~v~iwd~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  217 (358)
                      +|+.|+.+..||++ .++.+.. .+-|...|.++.-+|..+.++++|+.|-.|++||.|............+.|..+.++
T Consensus       183 tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~  262 (339)
T KOG0280|consen  183 TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHH  262 (339)
T ss_pred             ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEec
Confidence            99999999999998 3344443 456889999999999887999999999999999999766655566677999999999


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe-CCCcEE-EEecCCC
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVK-LWDLSNN  293 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i~-i~d~~~~  293 (358)
                      |.....+++++.-+-.++-+........    .........|.+-+..-.|.... .+|+|++ .|+.++ +|-.-++
T Consensus       263 p~~~~~lL~~CMh~G~ki~~~~~~~~e~----~~~~~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  263 PEIFHRLLAACMHNGAKILDSSDKVLEF----QIVLPSDKIHDSLCYGGDWDSKD-SFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             chhhhHHHHHHHhcCceEEEecccccch----heeeeccccccceeecccccccc-ceeeeeeccccceeeeeeeccC
Confidence            9765555555555557777777653210    11334455677777777775543 5788765 355544 5544433

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.59  E-value=1e-11  Score=104.80  Aligned_cols=265  Identities=12%  Similarity=0.190  Sum_probs=153.7

Q ss_pred             CcccCCCcEEEEEEecC-CCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC-CCCeEE
Q 018293            1 MTINPNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS-MEPAIE   78 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~   78 (358)
                      |.++|+++.|.++.... +.+.+..+.++...+   .+............      ||.++.+|++++|+++. .+|.|.
T Consensus        42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g---~L~~~~~~~~~g~~------p~~i~~~~~g~~l~vany~~g~v~  112 (345)
T PF10282_consen   42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG---TLTLLNSVPSGGSS------PCHIAVDPDGRFLYVANYGGGSVS  112 (345)
T ss_dssp             EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT---EEEEEEEEEESSSC------EEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEEEeCCCEEEEEEccccCCCCEEEEEECCCcc---eeEEeeeeccCCCC------cEEEEEecCCCEEEEEEccCCeEE
Confidence            46789999999996643 446666666665533   33333322222221      22345589999999886 489999


Q ss_pred             EEEcccccCcCcee-ecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc-
Q 018293           79 IWDLDVIDEVQPHV-ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-  156 (358)
Q Consensus        79 vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-  156 (358)
                      +++++....+.... ....             ....+. ..........++.|+|++..++++.-....|.+|++.... 
T Consensus       113 v~~l~~~g~l~~~~~~~~~-------------~g~g~~-~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~  178 (345)
T PF10282_consen  113 VFPLDDDGSLGEVVQTVRH-------------EGSGPN-PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTG  178 (345)
T ss_dssp             EEEECTTSEEEEEEEEEES-------------EEEESS-TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-
T ss_pred             EEEccCCcccceeeeeccc-------------CCCCCc-ccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCc
Confidence            99998633222111 0000             000000 0011234577899999955444444445689999997654 


Q ss_pred             -ee--eeec-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC--ccc--ee------eecCCeeeEEEcCCCCC
Q 018293          157 -CN--LTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH--SGF--KW------AVAADVESLAWDPHAEH  222 (358)
Q Consensus       157 -~~--~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~--~~------~~~~~i~~~~~~~~~~~  222 (358)
                       ..  ..+. ......+.+.|+|++....++...++.|.++++.....  ...  ..      ........++++|++..
T Consensus       179 ~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~  258 (345)
T PF10282_consen  179 KLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRF  258 (345)
T ss_dssp             TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSE
T ss_pred             eEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCE
Confidence             21  1221 23456789999999955556666788999999883221  110  00      01125778999997765


Q ss_pred             eEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe-CCCcEEEEecC--CCC
Q 018293          223 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLS--NNQ  294 (358)
Q Consensus       223 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~  294 (358)
                      ++++....+.|.+|++......     ...+..+.......+.++++|+| ++|+++. .++.|.+|++.  ++.
T Consensus       259 lyvsnr~~~sI~vf~~d~~~g~-----l~~~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v~vf~~d~~tG~  327 (345)
T PF10282_consen  259 LYVSNRGSNSISVFDLDPATGT-----LTLVQTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTVSVFDIDPDTGK  327 (345)
T ss_dssp             EEEEECTTTEEEEEEECTTTTT-----EEEEEEEEESSSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTE
T ss_pred             EEEEeccCCEEEEEEEecCCCc-----eEEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCeEEEEEEeCCCCc
Confidence            5555667889999999533110     13333444444557899999999 6666554 67789999774  554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=2.2e-12  Score=112.41  Aligned_cols=215  Identities=13%  Similarity=0.080  Sum_probs=124.3

Q ss_pred             CccccCCCceEEecCCC-C--eEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293           58 PLKDREKGNFMAVGSME-P--AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF  134 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~d-g--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  134 (358)
                      ++.|||||+.|+..+.+ +  .|++||+.+++...                         ....   .+.....+|+|+|
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-------------------------lt~~---~g~~~~~~wSPDG  273 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-------------------------VTSF---PGINGAPRFSPDG  273 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-------------------------ecCC---CCCcCCeeECCCC
Confidence            34559999998876532 3  58888886543211                         1111   1223467999996


Q ss_pred             CcEEEEEEcCCe--EEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCc--EEEEEcccCCCccceeeecCC
Q 018293          135 RNILASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKDARISTHSGFKWAVAAD  210 (358)
Q Consensus       135 ~~~l~s~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~  210 (358)
                      ..++++.+.+|.  |.++|+.+++.. .+..+........|+|++..+++++..++.  |.++|+.+++..... .....
T Consensus       274 ~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~  351 (448)
T PRK04792        274 KKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQ  351 (448)
T ss_pred             CEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCC
Confidence            655556677775  777788877643 344455556788999999444455544554  555666655433221 12223


Q ss_pred             eeeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc--EE
Q 018293          211 VESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--VK  286 (358)
Q Consensus       211 i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--i~  286 (358)
                      ....+|+|++..++++...++  .|.++|+.++.          ...+... .......|+|+|..++++...++.  ++
T Consensus       352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~----------~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~  420 (448)
T PRK04792        352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA----------MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA  420 (448)
T ss_pred             CcCeeECCCCCEEEEEEecCCceEEEEEECCCCC----------eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence            345789998775555555455  45556666542          1122211 112345799999555555555554  66


Q ss_pred             EEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293          287 LWDLSNNQPSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       287 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                      +++.....   ...+..+.+.+...+|+|-
T Consensus       421 ~~~~~G~~---~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        421 AVSIDGRF---KARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             EEECCCCc---eEECcCCCCCcCCCccCCC
Confidence            77764433   3334444556677788873

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.58  E-value=2.7e-12  Score=112.11  Aligned_cols=198  Identities=18%  Similarity=0.179  Sum_probs=126.1

Q ss_pred             CCcccEEEEecCCCCCcEEEEEEcC---CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC--cEEEEE
Q 018293          120 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD  194 (358)
Q Consensus       120 ~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d  194 (358)
                      .+...+...+|+|++ ++|+.+..+   ..|.+||+.+++... +..+...+.+++|+|++..++++.+.++  .|.+||
T Consensus       187 ~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d  264 (417)
T TIGR02800       187 RSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD  264 (417)
T ss_pred             cCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence            355678899999995 566665543   479999998886543 3334556677999999954555655555  588888


Q ss_pred             cccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293          195 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  272 (358)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  272 (358)
                      +.++.... ...+........|+|++..+++++..++  .|+++|+...         . ...+..+........|+|++
T Consensus       265 ~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~---------~-~~~l~~~~~~~~~~~~spdg  333 (417)
T TIGR02800       265 LDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG---------E-VRRLTFRGGYNASPSWSPDG  333 (417)
T ss_pred             CCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC---------C-EEEeecCCCCccCeEECCCC
Confidence            87665332 2223334556789997665555554444  4667776643         2 23344445567788999998


Q ss_pred             CcEEEEEeCCC---cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC--eEEEEEc
Q 018293          273 PNLLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG--KLEIWDT  335 (358)
Q Consensus       273 ~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vw~~  335 (358)
                       .+++.++.++   .|.+||+.++....   +... .......|+|+|++++++...++  .+++.+.
T Consensus       334 -~~i~~~~~~~~~~~i~~~d~~~~~~~~---l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       334 -DLIAFVHREGGGFNIAVMDLDGGGERV---LTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             -CEEEEEEccCCceEEEEEeCCCCCeEE---ccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence             6777666665   78899988765322   2211 22345689999997555554443  3555554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=2.8e-12  Score=110.94  Aligned_cols=219  Identities=11%  Similarity=0.050  Sum_probs=123.9

Q ss_pred             CccccCCCceE---EecCCCC--eEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCC
Q 018293           58 PLKDREKGNFM---AVGSMEP--AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK  132 (358)
Q Consensus        58 ~~~~s~~~~~l---~~g~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  132 (358)
                      +++|||||+.+   ++...+|  .|.+.++.+++...                         +.   ...+.....+|+|
T Consensus       189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-------------------------lt---~~~g~~~~p~wSP  240 (428)
T PRK01029        189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-------------------------IL---ALQGNQLMPTFSP  240 (428)
T ss_pred             cceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-------------------------ee---cCCCCccceEECC
Confidence            56779999752   3444444  56666766443211                         11   1233345679999


Q ss_pred             CCCcEEEEEEcCC----eEEEEECCCC---ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEc--ccC-CCcc
Q 018293          133 EFRNILASASADK----QVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA--RIS-THSG  202 (358)
Q Consensus       133 ~~~~~l~s~~~dg----~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~-~~~~  202 (358)
                      ||..++++...+|    .+..|++..+   +...............+|+|||..+++++..+|...+|.+  ... ....
T Consensus       241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~  320 (428)
T PRK01029        241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR  320 (428)
T ss_pred             CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence            9655444443333    3455776653   3333333222344678999999444445556776556544  321 1122


Q ss_pred             ceeeecCCeeeEEEcCCCCCeEEEEecC--CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe
Q 018293          203 FKWAVAADVESLAWDPHAEHSFVVSLED--GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~  280 (358)
                      ........+....|+|++..++++...+  ..|.+||+.+++         . ..+......+....|+|+|..+++++.
T Consensus       321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~---------~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR---------D-YQLTTSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC---------e-EEccCCCCCccceEECCCCCEEEEEEC
Confidence            1223334667889999876555555443  368999998762         2 223223345677899999844444444


Q ss_pred             C--CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293          281 T--DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS  317 (358)
Q Consensus       281 ~--dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  317 (358)
                      .  ...|+++|+.+++...+.   ...+.+...+|+|..
T Consensus       391 ~~g~~~L~~vdl~~g~~~~Lt---~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        391 NSNESELYLISLITKKTRKIV---IGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCCceEEEEECCCCCEEEee---cCCCcccCceecCCC
Confidence            3  345888899887643332   233456667888753

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.58  E-value=4e-13  Score=102.95  Aligned_cols=152  Identities=18%  Similarity=0.327  Sum_probs=100.7

Q ss_pred             EEEecCCCCCcEEEEEEc---------CCeEEEEECCC-Cceeeeecc-cccceeeEEEcCCCCcEEEE-EeCCCcEEEE
Q 018293          126 LGLAWNKEFRNILASASA---------DKQVKIWDVAA-GKCNLTLEH-HTDKVQAVAWNHHSPQILLS-GSFDRSVVMK  193 (358)
Q Consensus       126 ~~~~~~~~~~~~l~s~~~---------dg~v~iwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~-~~~dg~i~i~  193 (358)
                      ..+.|+|+|..+++....         -+...+|.++. ......+.- ..++|.+++|+|++..++++ |..++.+.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            467899996655555542         13455555532 233444432 34579999999999444333 4467899999


Q ss_pred             EcccCCCccceeeecCCeeeEEEcCCCCCeEEEEe---cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecC
Q 018293          194 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  270 (358)
Q Consensus       194 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  270 (358)
                      |++. +.+.  .-....+..+.|+|++. ++++++   ..|.|.+||.++.         +.+.... | ..++.++|+|
T Consensus        89 d~~~-~~i~--~~~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~---------~~i~~~~-~-~~~t~~~WsP  153 (194)
T PF08662_consen   89 DVKG-KKIF--SFGTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKK---------KKISTFE-H-SDATDVEWSP  153 (194)
T ss_pred             cCcc-cEeE--eecCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCC---------EEeeccc-c-CcEEEEEEcC
Confidence            9972 2222  22356788999999655 666654   3578999999965         4444433 3 3478999999


Q ss_pred             CCCcEEEEEeC------CCcEEEEecCCC
Q 018293          271 LVPNLLATGST------DKMVKLWDLSNN  293 (358)
Q Consensus       271 ~~~~~l~~~~~------dg~i~i~d~~~~  293 (358)
                      +| ++|++++.      |..++||+....
T Consensus       154 dG-r~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  154 DG-RYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             CC-CEEEEEEeccceeccccEEEEEecCe
Confidence            99 77777654      778999998643

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.57  E-value=6.7e-13  Score=111.28  Aligned_cols=190  Identities=13%  Similarity=0.182  Sum_probs=154.3

Q ss_pred             CCCcEEEEEEcCCeEEEEECCCCceeeeecc---cccceeeEEEc------C-------------CCCcEEEEEeCCCcE
Q 018293          133 EFRNILASASADKQVKIWDVAAGKCNLTLEH---HTDKVQAVAWN------H-------------HSPQILLSGSFDRSV  190 (358)
Q Consensus       133 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~------~-------------~~~~~l~~~~~dg~i  190 (358)
                      .+..++|....||.+++||...++....+..   ..+..++..|.      |             .+-..++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            3366899999999999999999887776642   23444555552      1             111467788899999


Q ss_pred             EEEEcccCCCcccee--eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEe
Q 018293          191 VMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY  268 (358)
Q Consensus       191 ~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  268 (358)
                      .+|++..++......  .|.+.|.++.++.+ -..+.+++.|+.+..|+....         ............+.++++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~-~~ciyS~~ad~~v~~~~~~~~---------~~~~~~~~~~~~~~sl~i  152 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQR-LGCIYSVGADLKVVYILEKEK---------VIIRIWKEQKPLVSSLCI  152 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccc-cCceEecCCceeEEEEecccc---------eeeeeeccCCCccceEEE
Confidence            999999887765443  57788999999884 458999999999999999987         667777788888999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCC-----CCeEEEEEccCCeEEEEEccC
Q 018293          269 NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED-----SPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       269 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      +||+ ..+++++  +.|++||+++.+  .+..+.+|.++|+++.|..+     |.|+|.+...+..+.+|-+..
T Consensus       153 s~D~-~~l~~as--~~ik~~~~~~ke--vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  153 SPDG-KILLTAS--RQIKVLDIETKE--VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cCCC-CEEEecc--ceEEEEEccCce--EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9998 7888876  589999999998  68889999999999999887     788888888888899998765

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=7.9e-12  Score=109.33  Aligned_cols=200  Identities=13%  Similarity=0.121  Sum_probs=123.6

Q ss_pred             CCcccEEEEecCCCCCcEEEEEEcC---CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC--cEEEEE
Q 018293          120 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD  194 (358)
Q Consensus       120 ~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d  194 (358)
                      .+...+....|+|+| +.|+..+.+   ..|.+||+.+++... +....+.+....|+|+|..++++.+.+|  .|.++|
T Consensus       196 ~~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d  273 (430)
T PRK00178        196 QSREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD  273 (430)
T ss_pred             cCCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence            466778999999995 556554433   368999998886533 3323344567899999944445665565  578889


Q ss_pred             cccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293          195 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  272 (358)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  272 (358)
                      +.++.... ............|+|++..++++...+|  .|+++|+.+++          ...+...........|+|++
T Consensus       274 ~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~----------~~~lt~~~~~~~~~~~Spdg  342 (430)
T PRK00178        274 LASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR----------AERVTFVGNYNARPRLSADG  342 (430)
T ss_pred             CCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC----------EEEeecCCCCccceEECCCC
Confidence            88765433 2333445667899998775566655555  46666765542          11221112233457899998


Q ss_pred             CcEEEEEeC-CC--cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC--eEEEEEccC
Q 018293          273 PNLLATGST-DK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG--KLEIWDTLS  337 (358)
Q Consensus       273 ~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vw~~~~  337 (358)
                       +.|+..+. ++  .|.++|+.+++...+.. .   .......|+|+|+.++++...+|  .|.++++..
T Consensus       343 -~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        343 -KTLVMVHRQDGNFHVAAQDLQRGSVRILTD-T---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             -CEEEEEEccCCceEEEEEECCCCCEEEccC-C---CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence             55555443 33  48889998876433221 1   12224689999997666655444  466666643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.56  E-value=4.7e-12  Score=112.88  Aligned_cols=192  Identities=14%  Similarity=0.166  Sum_probs=139.0

Q ss_pred             CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccc
Q 018293            6 NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI   85 (358)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~   85 (358)
                      .+..++.+.+.+     .+++++...+....- ..++...... .++-|     .++++.-++++|+.-+.|.+|+....
T Consensus        98 e~k~i~l~~~~n-----s~~i~d~~~~~~~~~-i~~~er~~l~-~~~~~-----g~s~~~~~i~~gsv~~~iivW~~~~d  165 (967)
T KOG0974|consen   98 ENKKIALVTSRN-----SLLIRDSKNSSVLSK-IQSDERCTLY-SSLII-----GDSAEELYIASGSVFGEIIVWKPHED  165 (967)
T ss_pred             hcceEEEEEcCc-----eEEEEecccCceehh-cCCCceEEEE-eEEEE-----eccCcEEEEEeccccccEEEEecccc
Confidence            344555665655     777887766521111 1111111101 12222     24678889999999999999998611


Q ss_pred             cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee-eeccc
Q 018293           86 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-TLEHH  164 (358)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~  164 (358)
                      +  .                         ...+.+|.+.|..+.|+.+ +.++++.+.|.++++|++++.+... ..-+|
T Consensus       166 n--~-------------------------p~~l~GHeG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH  217 (967)
T KOG0974|consen  166 N--K-------------------------PIRLKGHEGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSREVLGCTGFGH  217 (967)
T ss_pred             C--C-------------------------cceecccCCceEEEEEccC-CcEEEEEecCcceeeeecccccccCcccccc
Confidence            1  1                         0146689999999999999 6799999999999999999987766 66789


Q ss_pred             ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293          165 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  241 (358)
Q Consensus       165 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~  241 (358)
                      ...+..++|.|.   .+++++.|.+.++|+....+...........+..++..+ +....++++.|+.+++||+...
T Consensus       218 saRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  218 SARVWACCFLPN---RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             cceeEEEEeccc---eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhcc
Confidence            999999999996   699999999999997765554433333456688888888 5668899999999999987653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=5.8e-12  Score=110.15  Aligned_cols=214  Identities=14%  Similarity=0.122  Sum_probs=125.2

Q ss_pred             ccccCCCceEEecCCC---CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCC
Q 018293           59 LKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  135 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  135 (358)
                      +.|||||+.|+..+.+   ..|.+|++.+++...                            +....+.+....|+|+|.
T Consensus       204 p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----------------------------l~~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        204 PRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----------------------------ITNFEGLNGAPAWSPDGS  255 (430)
T ss_pred             eeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----------------------------ccCCCCCcCCeEECCCCC
Confidence            4459999998876533   368888987543211                            111223345689999965


Q ss_pred             cEEEEEEcCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC--cEEEEEcccCCCccceeeecCCe
Q 018293          136 NILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADV  211 (358)
Q Consensus       136 ~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~i  211 (358)
                      .++++...+|  .|.+||+.+++.. .+..+........|+|++..+++++..+|  .|.++|+.+++..... ......
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~  333 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYN  333 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCc
Confidence            4555666665  5888899887643 34445555677899999944445554444  4666777665533221 112234


Q ss_pred             eeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC--cEEE
Q 018293          212 ESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK--MVKL  287 (358)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg--~i~i  287 (358)
                      ....|+|++..++++...++  .|.+||+.++..          ..+. .........|+|+|..++++...++  .+.+
T Consensus       334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~----------~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~  402 (430)
T PRK00178        334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV----------RILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLML  402 (430)
T ss_pred             cceEECCCCCEEEEEEccCCceEEEEEECCCCCE----------EEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence            45789997765444444444  578888876521          1221 1112235689999944444444444  3666


Q ss_pred             EecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293          288 WDLSNNQPSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       288 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                      +++....   ...+..+.+.+...+|+|-
T Consensus       403 ~~~~g~~---~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        403 VSINGRV---RLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             EECCCCc---eEECcCCCCCcCCCccCCC
Confidence            7775443   2233334455666777763

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.55  E-value=1.8e-12  Score=101.83  Aligned_cols=202  Identities=16%  Similarity=0.230  Sum_probs=142.6

Q ss_pred             CCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccE
Q 018293           46 PAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV  125 (358)
Q Consensus        46 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  125 (358)
                      |..+.++.+       +++...|++|-..|++.-+.+..                       .-.+.........|...|
T Consensus        68 P~~~~~~~y-------~~e~~~L~vg~~ngtvtefs~se-----------------------dfnkm~~~r~~~~h~~~v  117 (404)
T KOG1409|consen   68 PSPCSAMEY-------VSESRRLYVGQDNGTVTEFALSE-----------------------DFNKMTFLKDYLAHQARV  117 (404)
T ss_pred             CCCceEeee-------eccceEEEEEEecceEEEEEhhh-----------------------hhhhcchhhhhhhhhcce
Confidence            444545544       77889999999999999888752                       112233344556799999


Q ss_pred             EEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC--CCccc
Q 018293          126 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGF  203 (358)
Q Consensus       126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~  203 (358)
                      ..+-|+.. ..++++.+.|..+.---.+.+..+..+. .....+++.+.-   .+...|...|.+..-.+...  ..+..
T Consensus       118 ~~~if~~~-~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~  192 (404)
T KOG1409|consen  118 SAIVFSLT-HEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDA---LYAFVGDHSGQITMLKLEQNGCQLITT  192 (404)
T ss_pred             eeEEecCC-ceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceee---EEEEecccccceEEEEEeecCCceEEE
Confidence            99999987 6799999999877655445554332221 111122222211   14455666666666555443  33444


Q ss_pred             eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC
Q 018293          204 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  283 (358)
Q Consensus       204 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg  283 (358)
                      ..++...+.+++|.+ .+.++.+|..|..+.+||+...        ......+.+|...|..+...+.- +.+.+++.||
T Consensus       193 ~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~--------~g~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg  262 (404)
T KOG1409|consen  193 FNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGR--------KGTAYELQGHNDKVQALSYAQHT-RQLISCGEDG  262 (404)
T ss_pred             EcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCC--------cceeeeeccchhhhhhhhhhhhh-eeeeeccCCC
Confidence            567889999999999 6679999999999999999866        25567788899999998888766 7889999999


Q ss_pred             cEEEEecCC
Q 018293          284 MVKLWDLSN  292 (358)
Q Consensus       284 ~i~i~d~~~  292 (358)
                      .|.+|++..
T Consensus       263 ~i~~w~mn~  271 (404)
T KOG1409|consen  263 GIVVWNMNV  271 (404)
T ss_pred             eEEEEeccc
Confidence            999999854

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.55  E-value=4.5e-12  Score=110.69  Aligned_cols=191  Identities=16%  Similarity=0.150  Sum_probs=116.3

Q ss_pred             CccccCCCceEEecCCC---CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293           58 PLKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF  134 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  134 (358)
                      ++.|+|||++|+.+..+   ..|++||+.++....                            +..+...+.+++|+|++
T Consensus       194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----------------------------~~~~~~~~~~~~~spDg  245 (417)
T TIGR02800       194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----------------------------VASFPGMNGAPAFSPDG  245 (417)
T ss_pred             cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----------------------------eecCCCCccceEECCCC
Confidence            34569999999877643   479999987543211                            11244556678999996


Q ss_pred             CcEEEEEEcCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEE-EEeCCC--cEEEEEcccCCCccceeeecC
Q 018293          135 RNILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILL-SGSFDR--SVVMKDARISTHSGFKWAVAA  209 (358)
Q Consensus       135 ~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~  209 (358)
                      ..++++.+.++  .|.+||+.+++.. .+..+........|+|++ +.++ ++..++  .|.++|+.+++... ......
T Consensus       246 ~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~  322 (417)
T TIGR02800       246 SKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGG  322 (417)
T ss_pred             CEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCEEE-eecCCC
Confidence            54555655554  5888898877543 343344455678999999 5554 444444  47777776554322 223445


Q ss_pred             CeeeEEEcCCCCCeEEEEecCC---eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC---
Q 018293          210 DVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---  283 (358)
Q Consensus       210 ~i~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg---  283 (358)
                      ......|+|++. .++.+..++   .|.+||+.++.          ...+... .......|+|++ +.|+..+.++   
T Consensus       323 ~~~~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~----------~~~l~~~-~~~~~p~~spdg-~~l~~~~~~~~~~  389 (417)
T TIGR02800       323 YNASPSWSPDGD-LIAFVHREGGGFNIAVMDLDGGG----------ERVLTDT-GLDESPSFAPNG-RMILYATTRGGRG  389 (417)
T ss_pred             CccCeEECCCCC-EEEEEEccCCceEEEEEeCCCCC----------eEEccCC-CCCCCceECCCC-CEEEEEEeCCCcE
Confidence            567889999765 566555554   78888887641          1122211 223456899998 5555544433   


Q ss_pred             cEEEEecCC
Q 018293          284 MVKLWDLSN  292 (358)
Q Consensus       284 ~i~i~d~~~  292 (358)
                      .+++.+...
T Consensus       390 ~l~~~~~~g  398 (417)
T TIGR02800       390 VLGLVSTDG  398 (417)
T ss_pred             EEEEEECCC
Confidence            355555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.55  E-value=4.1e-12  Score=107.11  Aligned_cols=195  Identities=16%  Similarity=0.204  Sum_probs=136.6

Q ss_pred             cEE-EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeE
Q 018293          136 NIL-ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  214 (358)
Q Consensus       136 ~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  214 (358)
                      +++ ++-..++.|.+.|..+.+.+.++......-..+.|+||+ +++++++.||.|.++|+.+.+... ..........+
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~-~i~~G~~~~~i   83 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVA-TIKVGGNPRGI   83 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEE-EEE-SSEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEE-EEecCCCcceE
Confidence            344 455678999999999999999998655544567899999 788888999999999999988665 34555667889


Q ss_pred             EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-------CCceeEEEecCCCCcEEEEEeCCCcEEE
Q 018293          215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-------DKAVCTISYNPLVPNLLATGSTDKMVKL  287 (358)
Q Consensus       215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~~l~~~~~dg~i~i  287 (358)
                      ++++++...+++...++.+.++|.++.         +.+..+...       ...+.++..+|..+.++++--+.+.|.+
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~tl---------e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~v  154 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAETL---------EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWV  154 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT-----------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEE
T ss_pred             EEcCCCCEEEEEecCCCceeEeccccc---------cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEE
Confidence            999977755556668999999999987         556655432       2457788888877445555555688988


Q ss_pred             EecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          288 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       288 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      .|....+........ .........|+|+++|++++...++.|-++|..+++.+.
T Consensus       155 Vdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~  208 (369)
T PF02239_consen  155 VDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA  208 (369)
T ss_dssp             EETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             EEeccccccceeeec-ccccccccccCcccceeeecccccceeEEEeeccceEEE
Confidence            898776654333332 334577899999999988877788899999999877654

...

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=6.9e-12  Score=108.51  Aligned_cols=209  Identities=9%  Similarity=0.044  Sum_probs=124.2

Q ss_pred             CcccEEEEecCCCCCc--EEEEEEcCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC----cEEE
Q 018293          121 HTDSVLGLAWNKEFRN--ILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR----SVVM  192 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~--~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i  192 (358)
                      ....+..-.|+|+|..  ++++...+|  .|.+.++.+++... +....+.....+|+|||..++++...+|    .+..
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~  261 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS  261 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence            3445667799999654  333444444  57777888775433 2223444567899999954444443333    3444


Q ss_pred             EEcccCC--Cccceeee-cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEec
Q 018293          193 KDARIST--HSGFKWAV-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN  269 (358)
Q Consensus       193 ~d~~~~~--~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  269 (358)
                      |++..+.  ........ .......+|+|++..++++...+|...+|.+.....      ......+..+...+....|+
T Consensus       262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~------g~~~~~lt~~~~~~~~p~wS  335 (428)
T PRK01029        262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE------GQSPRLLTKKYRNSSCPAWS  335 (428)
T ss_pred             eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc------ccceEEeccCCCCccceeEC
Confidence            6665431  11112222 234467899998775666665677656665432100      02233344444567789999


Q ss_pred             CCCCcEEEEE-eCC--CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEcc--CCeEEEEEccCCCc
Q 018293          270 PLVPNLLATG-STD--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDAG  340 (358)
Q Consensus       270 ~~~~~~l~~~-~~d--g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~  340 (358)
                      ||| +.|+.. ..+  ..|.+||+.+++...   +......+....|+|||+.+++++..  ...|+++|+.+++.
T Consensus       336 PDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~---Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        336 PDG-KKIAFCSVIKGVRQICVYDLATGRDYQ---LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             CCC-CEEEEEEcCCCCcEEEEEECCCCCeEE---ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            999 555544 333  359999999887432   22223456778999999976655543  35688889877653

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.53  E-value=5e-12  Score=106.12  Aligned_cols=194  Identities=18%  Similarity=0.245  Sum_probs=148.6

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec------CC---
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW------NK---  132 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~------~~---  132 (358)
                      .|...++|....||.+++|+...++....+.-..                     .   -++..++..|      +|   
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~---------------------~---~s~t~~~~~w~L~~~~s~~k~   57 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA---------------------S---LSGTCTYTKWGLSADYSPMKW   57 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccch---------------------h---ccCcceeEEEEEEeccchHHH
Confidence            4567899999999999999998765443221110                     0   1111222222      11   


Q ss_pred             ----------CCCcEEEEEEcCCeEEEEECCCCceeeeec--ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293          133 ----------EFRNILASASADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  200 (358)
Q Consensus       133 ----------~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  200 (358)
                                .+..+++-|...|.|.+|++..++....+.  .|.+.|.++.++.+- ..|.+++.|+.+..|+......
T Consensus        58 ~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~  136 (541)
T KOG4547|consen   58 LSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVI  136 (541)
T ss_pred             HhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEeccccee
Confidence                      124578889999999999999998877774  688999999998887 7899999999999999999888


Q ss_pred             ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC-----CCcE
Q 018293          201 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL-----VPNL  275 (358)
Q Consensus       201 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-----~~~~  275 (358)
                      ..........+.+++.+|++ ..+++++  +.|++||+.+.         +.+..+.+|.++|+++.|..+     |..+
T Consensus       137 ~~~~~~~~~~~~sl~is~D~-~~l~~as--~~ik~~~~~~k---------evv~~ftgh~s~v~t~~f~~~~~g~~G~~v  204 (541)
T KOG4547|consen  137 IRIWKEQKPLVSSLCISPDG-KILLTAS--RQIKVLDIETK---------EVVITFTGHGSPVRTLSFTTLIDGIIGKYV  204 (541)
T ss_pred             eeeeccCCCccceEEEcCCC-CEEEecc--ceEEEEEccCc---------eEEEEecCCCcceEEEEEEEecccccccee
Confidence            88777778889999999974 4777664  78999999998         889999999999999999876     5344


Q ss_pred             EEEEeCCCcEEEEecCC
Q 018293          276 LATGSTDKMVKLWDLSN  292 (358)
Q Consensus       276 l~~~~~dg~i~i~d~~~  292 (358)
                      |.+...+..+.+|-++.
T Consensus       205 Lssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  205 LSSAAAERGITVWVVEK  221 (541)
T ss_pred             eeccccccceeEEEEEc
Confidence            44455566688887665

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.52  E-value=1.9e-12  Score=115.36  Aligned_cols=197  Identities=14%  Similarity=0.175  Sum_probs=152.6

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccc----eeeEEEcCCCCcEEEEEeCCCcEEEEEcccC
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDK----VQAVAWNHHSPQILLSGSFDRSVVMKDARIS  198 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  198 (358)
                      +.|....+..+ ...++.++.++.+.+||...+.....+......    ..-+.++++. -++++|+.-+.|.+|+....
T Consensus        88 ~wi~g~~l~~e-~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~d  165 (967)
T KOG0974|consen   88 DWIFGAKLFEE-NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHED  165 (967)
T ss_pred             ccccccchhhh-cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEecccc
Confidence            34444555555 557888899999999999888776666532221    1122345555 68899999999999999854


Q ss_pred             CCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEE
Q 018293          199 THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT  278 (358)
Q Consensus       199 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~  278 (358)
                      .......+|++.+..+.|+.+ +.++++.++|.++++|++.+.+        ......-+|...+..++|.|+   .+++
T Consensus       166 n~p~~l~GHeG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~~--------~~~~~~fgHsaRvw~~~~~~n---~i~t  233 (967)
T KOG0974|consen  166 NKPIRLKGHEGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSRE--------VLGCTGFGHSARVWACCFLPN---RIIT  233 (967)
T ss_pred             CCcceecccCCceEEEEEccC-CcEEEEEecCcceeeeeccccc--------ccCcccccccceeEEEEeccc---eeEE
Confidence            444457889999999999995 5599999999999999999873        233466789999999999984   8999


Q ss_pred             EeCCCcEEEEecCCCCceeeEecCCC-CceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          279 GSTDKMVKLWDLSNNQPSCIASRNPK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       279 ~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ++.|.+.++|+....+.   ..+..| ...+..++..++.. +++|++.||.+++|++..
T Consensus       234 ~gedctcrvW~~~~~~l---~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  234 VGEDCTCRVWGVNGTQL---EVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eccceEEEEEeccccee---hhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhc
Confidence            99999999997766552   255555 34688999988877 699999999999999865

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=1.5e-11  Score=102.70  Aligned_cols=233  Identities=16%  Similarity=0.275  Sum_probs=151.2

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCC-c
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR-N  136 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~  136 (358)
                      .+.|+.|..+.|= -..+.+.+|+....+....                          .  -|...|+.+.++|... .
T Consensus       130 ~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~--------------------------k--l~~~~i~~f~lSpgp~~~  180 (566)
T KOG2315|consen  130 VPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQH--------------------------K--LSVSGITMLSLSPGPEPP  180 (566)
T ss_pred             ccccccchhhhhh-hhcceEEEEecCCccceee--------------------------e--eeccceeeEEecCCCCCc
Confidence            4567888765443 2357899999875332221                          1  2677899999998733 3


Q ss_pred             EEEE-----EEcCCeEEEEECCCCce-----eeeecccccceeeEEEcCCCCcEEEEEeCC-----------CcEEEEEc
Q 018293          137 ILAS-----ASADKQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWNHHSPQILLSGSFD-----------RSVVMKDA  195 (358)
Q Consensus       137 ~l~s-----~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------g~i~i~d~  195 (358)
                      .+|+     .+.-+.|+||.......     .+.|-  ...=..+.|++-|..+|+.++.|           .++++.++
T Consensus       181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t  258 (566)
T KOG2315|consen  181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT  258 (566)
T ss_pred             eEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence            3433     24456799998762221     11221  12223578988875566555432           35777787


Q ss_pred             ccCCCccceeeecCCeeeEEEcCCCCCeEEE-EecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc
Q 018293          196 RISTHSGFKWAVAADVESLAWDPHAEHSFVV-SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  274 (358)
Q Consensus       196 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  274 (358)
                      . +..........++|.++.|+|++..+.++ |-.--.+.+||++.          .+++.+.  .++=+++-|+|.| +
T Consensus       259 ~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----------~~v~df~--egpRN~~~fnp~g-~  324 (566)
T KOG2315|consen  259 Q-GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----------KPVFDFP--EGPRNTAFFNPHG-N  324 (566)
T ss_pred             c-CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC----------CEeEeCC--CCCccceEECCCC-C
Confidence            7 33333344567899999999976544333 66778899999985          4555543  5667899999998 7


Q ss_pred             EEEEEeC---CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEcc-----CCeEEEEEccCCC
Q 018293          275 LLATGST---DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS-----KGKLEIWDTLSDA  339 (358)
Q Consensus       275 ~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~vw~~~~~~  339 (358)
                      +++.++.   -|.+.|||+.+.+  ++..+...  .-+-+.|+|||+|++.+.+.     |+.++||+.....
T Consensus       325 ii~lAGFGNL~G~mEvwDv~n~K--~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  325 IILLAGFGNLPGDMEVWDVPNRK--LIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             EEEEeecCCCCCceEEEeccchh--hccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence            7776655   4789999999866  44444433  24457999999985544443     7889999985433

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.51  E-value=5.8e-12  Score=99.00  Aligned_cols=237  Identities=15%  Similarity=0.224  Sum_probs=174.8

Q ss_pred             CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293           63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  142 (358)
Q Consensus        63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  142 (358)
                      |...-+++.+.|.+++||--....+..+.                         .......+++++++.++ ...|+.|-
T Consensus        34 ~~e~gv~~~s~drtvrv~lkrds~q~wps-------------------------I~~~mP~~~~~~~y~~e-~~~L~vg~   87 (404)
T KOG1409|consen   34 PKEEGVISVSEDRTVRVWLKRDSGQYWPS-------------------------IYHYMPSPCSAMEYVSE-SRRLYVGQ   87 (404)
T ss_pred             cCCCCeEEccccceeeeEEeccccccCch-------------------------hhhhCCCCceEeeeecc-ceEEEEEE
Confidence            44556899999999999965432222211                         11124578999999998 66899999


Q ss_pred             cCCeEEEEECC----CCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293          143 ADKQVKIWDVA----AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  218 (358)
Q Consensus       143 ~dg~v~iwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  218 (358)
                      .+|++.-+.+.    ....++....|...+..+-|+-.. ..+++.+.|..+.-.-.+.+.... ........+++.+.-
T Consensus        88 ~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg-~Y~~~~~~t~~~~d~  165 (404)
T KOG1409|consen   88 DNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLG-GYNFETPASALQFDA  165 (404)
T ss_pred             ecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCccc-ceEeeccCCCCceee
Confidence            99999988764    345566677899999999998776 788899988877655555544433 122223333333332


Q ss_pred             CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceee
Q 018293          219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  298 (358)
Q Consensus       219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  298 (358)
                        . +...|...|.|.+-.+.....       .++..+.+|..++.+++|.|.. .+|.+|..|..+.+||+...+. ..
T Consensus       166 --~-~~fvGd~~gqvt~lr~~~~~~-------~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g-~~  233 (404)
T KOG1409|consen  166 --L-YAFVGDHSGQITMLKLEQNGC-------QLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKG-TA  233 (404)
T ss_pred             --E-EEEecccccceEEEEEeecCC-------ceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcc-ee
Confidence              1 566777778877776655432       7788899999999999999976 8999999999999999977654 45


Q ss_pred             EecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      .+..+|...|..+...+--+ .+.+++.||.|.+|+++....
T Consensus       234 ~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  234 YELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             eeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccceee
Confidence            66778888899888888777 588899999999999976543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.49  E-value=4.9e-10  Score=92.56  Aligned_cols=251  Identities=11%  Similarity=0.081  Sum_probs=146.1

Q ss_pred             ccCCCceEEecCC----------CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec
Q 018293           61 DREKGNFMAVGSM----------EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW  130 (358)
Q Consensus        61 ~s~~~~~l~~g~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  130 (358)
                      +||||+.|+++..          +..|.+||..+.+......+...+.                   . ........+++
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~-------------------~-~~~~~~~~~~l  112 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR-------------------F-LVGTYPWMTSL  112 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch-------------------h-hccCccceEEE
Confidence            3899998877665          7899999999877665443321000                   0 01223457789


Q ss_pred             CCCCCcEEEEEE-c-CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc-eeee
Q 018293          131 NKEFRNILASAS-A-DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWAV  207 (358)
Q Consensus       131 ~~~~~~~l~s~~-~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~  207 (358)
                      +|+| ++|+... . +..|.+.|+.+++.+.++.-. +...-...++..   +.+-+.||......+........ ....
T Consensus       113 s~dg-k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~---~~~~~~Dg~~~~v~~d~~g~~~~~~~~v  187 (352)
T TIGR02658       113 TPDN-KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDT---FFMHCRDGSLAKVGYGTKGNPKIKPTEV  187 (352)
T ss_pred             CCCC-CEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCc---cEEEeecCceEEEEecCCCceEEeeeee
Confidence            9995 4555443 4 789999999999998888642 222222222222   12223445444433322211110 0000


Q ss_pred             --c--CCe-eeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe-------ecCCceeEEEecCCCCcE
Q 018293          208 --A--ADV-ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-------AHDKAVCTISYNPLVPNL  275 (358)
Q Consensus       208 --~--~~i-~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~~  275 (358)
                        .  .++ ..-.|.+.++..+++..+ |.|.+.|+.......    ......+.       -..+.+.-++++|+++++
T Consensus       188 f~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~----~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l  262 (352)
T TIGR02658       188 FHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF----LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI  262 (352)
T ss_pred             ecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee----cceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence              0  000 000345534556666666 999999975543211    01111111       123344559999998444


Q ss_pred             EEEEe---------CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCC-eEEEEEccCCeEEEEEccCCCccccc
Q 018293          276 LATGS---------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       276 l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      ++...         ..+.|.++|..+.+.  +..+.. ...+..++++||++ .++++...++.|.++|..+++.+.+.
T Consensus       263 yV~~~~~~~~thk~~~~~V~ViD~~t~kv--i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       263 YLLADQRAKWTHKTASRFLFVVDAKTGKR--LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEecCCccccccCCCCEEEEEECCCCeE--EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            44231         124799999999884  333322 34788999999999 65666667899999999999888764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.48  E-value=2.6e-09  Score=85.17  Aligned_cols=289  Identities=10%  Similarity=0.157  Sum_probs=173.4

Q ss_pred             EEEEEec-CCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC---CeEEEEEcccc
Q 018293           10 IVCARNE-DDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME---PAIEIWDLDVI   85 (358)
Q Consensus        10 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~vw~~~~~   85 (358)
                      +.+|... ++...+.+|.++...+   .+...........|.-++|       +|++++|.++..+   |.|.-|.++..
T Consensus         5 ~YiGtyT~~~s~gI~v~~ld~~~g---~l~~~~~v~~~~nptyl~~-------~~~~~~LY~v~~~~~~ggvaay~iD~~   74 (346)
T COG2706           5 VYIGTYTKRESQGIYVFNLDTKTG---ELSLLQLVAELGNPTYLAV-------NPDQRHLYVVNEPGEEGGVAAYRIDPD   74 (346)
T ss_pred             EEEeeecccCCCceEEEEEeCccc---ccchhhhccccCCCceEEE-------CCCCCEEEEEEecCCcCcEEEEEEcCC
Confidence            3444333 2234556666665554   2222222222333444444       8999999887654   78888888742


Q ss_pred             cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE-cCCeEEEEECCC-Cceee--ee
Q 018293           86 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWDVAA-GKCNL--TL  161 (358)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~-~~~~~--~~  161 (358)
                      .....                       .......-..+-+.++++++ +++++++. ..|.|.++-++. |.+..  ..
T Consensus        75 ~G~Lt-----------------------~ln~~~~~g~~p~yvsvd~~-g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~  130 (346)
T COG2706          75 DGRLT-----------------------FLNRQTLPGSPPCYVSVDED-GRFVFVANYHSGSVSVYPLQADGSLQPVVQV  130 (346)
T ss_pred             CCeEE-----------------------EeeccccCCCCCeEEEECCC-CCEEEEEEccCceEEEEEcccCCccccceee
Confidence            11100                       00011111223388999999 45666664 468899999865 43221  11


Q ss_pred             cccccc----------eeeEEEcCCCCcEEEEEeC-CCcEEEEEcccCCCccc---eeeecCCeeeEEEcCCCCCeEEEE
Q 018293          162 EHHTDK----------VQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGF---KWAVAADVESLAWDPHAEHSFVVS  227 (358)
Q Consensus       162 ~~~~~~----------v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~  227 (358)
                      ..|.+.          +....+.|++ +++++... --.|.+|++..+.....   ..........+.|+|++....++.
T Consensus       131 ~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~  209 (346)
T COG2706         131 VKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN  209 (346)
T ss_pred             eecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEe
Confidence            224443          7889999999 67766653 34799999986654321   224456789999999766444555


Q ss_pred             ecCCeEEEEEcccCCCCCCCCCCCccEEE---e---ecCCceeEEEecCCCCcEEEEEeC-CCcEEEEecCC--CCceee
Q 018293          228 LEDGTIKGFDIRTAKSDPDSTSQQSSFTL---H---AHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSN--NQPSCI  298 (358)
Q Consensus       228 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~---~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~~~~~  298 (358)
                      --+++|.+|.........     ..++.+   .   ........|.++|+| ++|+++.. ...|.+|.+..  ++...+
T Consensus       210 EL~stV~v~~y~~~~g~~-----~~lQ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L~~~  283 (346)
T COG2706         210 ELNSTVDVLEYNPAVGKF-----EELQTIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKLELV  283 (346)
T ss_pred             ccCCEEEEEEEcCCCceE-----EEeeeeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEEEEE
Confidence            568999999998741100     111111   1   123456789999999 77777644 34688887754  333333


Q ss_pred             EecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      .....+...-....|++.|++++|+.-.+..|.+|......
T Consensus       284 ~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         284 GITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             EEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence            33444445578899999999766665556689999886543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.47  E-value=1.1e-10  Score=111.13  Aligned_cols=265  Identities=13%  Similarity=0.144  Sum_probs=159.6

Q ss_pred             ccccC-CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           59 LKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        59 ~~~s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      +++++ +++++++-..++.|++||.... ...   ..++...        .......  .-.++-.....+++.++++.+
T Consensus       573 vavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~---~ig~~g~--------~G~~dG~--~~~a~f~~P~GIavd~~gn~L  638 (1057)
T PLN02919        573 LAIDLLNNRLFISDSNHNRIVVTDLDGN-FIV---QIGSTGE--------EGLRDGS--FEDATFNRPQGLAYNAKKNLL  638 (1057)
T ss_pred             EEEECCCCeEEEEECCCCeEEEEeCCCC-EEE---EEccCCC--------cCCCCCc--hhccccCCCcEEEEeCCCCEE
Confidence            34465 4667777778889999997532 111   0110000        0000000  001123346788999884434


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeeccc-----------------ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEHH-----------------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  200 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  200 (358)
                      +++-..++.|+++|..++. +.++.+.                 -.....++++|++..++++...++.|++||..++..
T Consensus       639 YVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v  717 (1057)
T PLN02919        639 YVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT  717 (1057)
T ss_pred             EEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence            4444556789999987764 3333110                 123467999996547778888889999999876532


Q ss_pred             ccce--------------eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCC----CCCCccEEEee----
Q 018293          201 SGFK--------------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS----TSQQSSFTLHA----  258 (358)
Q Consensus       201 ~~~~--------------~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~~----  258 (358)
                      ....              ...-.....++++|++..++++-..++.|++||+.++......    ........+..    
T Consensus       718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~  797 (1057)
T PLN02919        718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV  797 (1057)
T ss_pred             EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCc
Confidence            1100              0011345679999977667777778899999999865210000    00000001100    


Q ss_pred             ----cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec-----------CCCCceeEEEEEcCCCCeEEEE
Q 018293          259 ----HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-----------NPKAGAVFSVAFSEDSPFVLAI  323 (358)
Q Consensus       259 ----~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~l~~  323 (358)
                          .-....+++++++| .++++-+.++.|++||..++....+...           ...-.....++++++|+ ++++
T Consensus       798 g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVa  875 (1057)
T PLN02919        798 GSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVA  875 (1057)
T ss_pred             hhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEE
Confidence                01123688999988 7888888899999999987753222111           01112467899999998 7888


Q ss_pred             EccCCeEEEEEccCCCc
Q 018293          324 GGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       324 ~~~dg~i~vw~~~~~~~  340 (358)
                      -+.++.|++||+.+++.
T Consensus       876 Dt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        876 DTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ECCCCEEEEEECCCCcc
Confidence            88999999999988765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.45  E-value=4.9e-12  Score=98.20  Aligned_cols=250  Identities=18%  Similarity=0.260  Sum_probs=161.9

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCc------------ccE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT------------DSV  125 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v  125 (358)
                      ++.|...|.||++|...|.|.+|.-....                      ....+....+++|.            ..|
T Consensus        31 aVefd~tg~YlatGDkgGRVvlfer~~s~----------------------~ceykf~teFQshe~EFDYLkSleieEKi   88 (460)
T COG5170          31 AVEFDETGLYLATGDKGGRVVLFEREKSY----------------------GCEYKFFTEFQSHELEFDYLKSLEIEEKI   88 (460)
T ss_pred             EEEeccccceEeecCCCceEEEeeccccc----------------------ccchhhhhhhcccccchhhhhhccHHHHh
Confidence            34457889999999999999999865321                      11222233344443            468


Q ss_pred             EEEecCCC-CCcEEEEEEcCCeEEEEECCCCc-------------------eee-----------------------ee-
Q 018293          126 LGLAWNKE-FRNILASASADKQVKIWDVAAGK-------------------CNL-----------------------TL-  161 (358)
Q Consensus       126 ~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~-------------------~~~-----------------------~~-  161 (358)
                      ..|.|..+ +...++..+.|.+|++|.+....                   ++.                       .. 
T Consensus        89 n~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvya  168 (460)
T COG5170          89 NAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYA  168 (460)
T ss_pred             hheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecc
Confidence            88888654 45567778899999999875320                   000                       01 


Q ss_pred             cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee--------eecCCeeeEEEcCCCCCeEEEEecCCeE
Q 018293          162 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--------AVAADVESLAWDPHAEHSFVVSLEDGTI  233 (358)
Q Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~~~dg~i  233 (358)
                      ..|...+.++.|+.+. ..+++ ..|-.|.+|++..........        ....-|++..|+|...+.+..++..|.|
T Consensus       169 NaH~yhiNSiS~NsD~-et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I  246 (460)
T COG5170         169 NAHPYHINSISFNSDK-ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI  246 (460)
T ss_pred             ccceeEeeeeeecCch-heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence            2467778899999887 55554 458889999987554322111        1234588999999888888889999999


Q ss_pred             EEEEcccCCCCCCCCC-------CCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCc
Q 018293          234 KGFDIRTAKSDPDSTS-------QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG  306 (358)
Q Consensus       234 ~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  306 (358)
                      ++-|+|..........       .....-+..-.+.|..+.|+++| +++++-.. -++++||++..+. ++.+...|..
T Consensus       247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k~-pikTi~~h~~  323 (460)
T COG5170         247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAKN-PIKTIPMHCD  323 (460)
T ss_pred             EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEecccccC-CceeechHHH
Confidence            9999995422110000       00011112234678899999998 88887554 5799999987653 4555444421


Q ss_pred             ------------e---eEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          307 ------------A---VFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       307 ------------~---v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                                  .   -..+.|+.|... +.+|+..+..-+|-.
T Consensus       324 l~~~l~d~YEnDaifdkFeisfSgd~~~-v~sgsy~NNfgiyp~  366 (460)
T COG5170         324 LMDELNDVYENDAIFDKFEISFSGDDKH-VLSGSYSNNFGIYPT  366 (460)
T ss_pred             HHHHHHhhhhccceeeeEEEEecCCccc-ccccccccceeeecc
Confidence                        2   235788888775 667877777666653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.44  E-value=9.1e-10  Score=87.74  Aligned_cols=259  Identities=12%  Similarity=0.210  Sum_probs=159.3

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCC-CCeEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-EPAIEI   79 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~v   79 (358)
                      |.++|+++.|.++..+++.+.+..|-++...+   .+-.......+..+.|      .++.+++|++|+++.. .|.|.+
T Consensus        45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G---~Lt~ln~~~~~g~~p~------yvsvd~~g~~vf~AnY~~g~v~v  115 (346)
T COG2706          45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG---RLTFLNRQTLPGSPPC------YVSVDEDGRFVFVANYHSGSVSV  115 (346)
T ss_pred             EEECCCCCEEEEEEecCCcCcEEEEEEcCCCC---eEEEeeccccCCCCCe------EEEECCCCCEEEEEEccCceEEE
Confidence            57899999999998887777888887877654   4433333344444433      3455899999999875 489999


Q ss_pred             EEcccccCcCce-eecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc-CCeEEEEECCCCce
Q 018293           80 WDLDVIDEVQPH-VILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQVKIWDVAAGKC  157 (358)
Q Consensus        80 w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~  157 (358)
                      +-++....+.+. .......             .. .+. ..-..-+....+.|+ +++|++.+. --.|.+|++..|++
T Consensus       116 ~p~~~dG~l~~~v~~~~h~g-------------~~-p~~-rQ~~~h~H~a~~tP~-~~~l~v~DLG~Dri~~y~~~dg~L  179 (346)
T COG2706         116 YPLQADGSLQPVVQVVKHTG-------------SG-PHE-RQESPHVHSANFTPD-GRYLVVPDLGTDRIFLYDLDDGKL  179 (346)
T ss_pred             EEcccCCccccceeeeecCC-------------CC-CCc-cccCCccceeeeCCC-CCEEEEeecCCceEEEEEcccCcc
Confidence            999764333322 1110000             00 000 001112778889999 556666643 34699999998765


Q ss_pred             eeeec---ccccceeeEEEcCCCCcEEE-EEeCCCcEEEEEcccCC-Cccc---------eeeecCCeeeEEEcCCCCCe
Q 018293          158 NLTLE---HHTDKVQAVAWNHHSPQILL-SGSFDRSVVMKDARIST-HSGF---------KWAVAADVESLAWDPHAEHS  223 (358)
Q Consensus       158 ~~~~~---~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~-~~~~---------~~~~~~~i~~~~~~~~~~~~  223 (358)
                      ...-.   ......+.|.|+|++ ++.. ..--+++|.+|...... ....         .+........+..++++. +
T Consensus       180 ~~~~~~~v~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr-F  257 (346)
T COG2706         180 TPADPAEVKPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR-F  257 (346)
T ss_pred             ccccccccCCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC-E
Confidence            32211   234567899999999 5544 45569999999987741 1111         112234577888999655 5


Q ss_pred             EEEEe-cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC-CCcEEEEecCC
Q 018293          224 FVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSN  292 (358)
Q Consensus       224 ~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~i~d~~~  292 (358)
                      |.++. ....|.+|.+......     ...+.....+....+...++|.+ ++|+++.. +..|.+|.+..
T Consensus       258 LYasNRg~dsI~~f~V~~~~g~-----L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         258 LYASNRGHDSIAVFSVDPDGGK-----LELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             EEEecCCCCeEEEEEEcCCCCE-----EEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcC
Confidence            55543 3447888888765210     01222223334446889999988 66666655 45688887654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.44  E-value=4.3e-10  Score=92.53  Aligned_cols=197  Identities=15%  Similarity=0.170  Sum_probs=138.9

Q ss_pred             ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEee----ceeecCCcccceeeecCCcccc-CCCceEEecCCCCeE
Q 018293            3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVH----HHIIIPAFPLCMAWLDCPLKDR-EKGNFMAVGSMEPAI   77 (358)
Q Consensus         3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~g~~dg~i   77 (358)
                      .+.+|..++.. ..+     .+|+|+..++....+-..    .+...+.+..-.+++.   .|+ .+|++++..+ -|..
T Consensus       274 ~nsDGkrIvFq-~~G-----dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyle---dfa~~~Gd~ia~VS-RGka  343 (668)
T COG4946         274 ANSDGKRIVFQ-NAG-----DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLE---DFAVVNGDYIALVS-RGKA  343 (668)
T ss_pred             cCCCCcEEEEe-cCC-----cEEEeCCCcCcceeeecCCccccccccccccCHHHhhh---hhccCCCcEEEEEe-cCcE
Confidence            35678888777 334     899999888755444333    1222222222233322   122 2688888887 4667


Q ss_pred             EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCC-eEEEEECCCCc
Q 018293           78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK-QVKIWDVAAGK  156 (358)
Q Consensus        78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~  156 (358)
                      .|.+...+-.+                             ..+|.+.|.-..+..+ ++-++.|..|| .+-|+|..+++
T Consensus       344 Fi~~~~~~~~i-----------------------------qv~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~e  393 (668)
T COG4946         344 FIMRPWDGYSI-----------------------------QVGKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGGE  393 (668)
T ss_pred             EEECCCCCeeE-----------------------------EcCCCCceEEEEEccC-CcceEEeccCCceEEEEecCCce
Confidence            67665432221                             1257778888888877 45788999999 89999988876


Q ss_pred             eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCC----e
Q 018293          157 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG----T  232 (358)
Q Consensus       157 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg----~  232 (358)
                      . ..+...-+.|.++..+++| ..++.+.....+.+.|+.++..........+-|+.+.|+|+ ...++-+--+|    .
T Consensus       394 ~-kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n-sr~iAYafP~gy~tq~  470 (668)
T COG4946         394 V-KRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN-SRWIAYAFPEGYYTQS  470 (668)
T ss_pred             E-EEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC-ceeEEEecCcceeeee
Confidence            4 4455566789999999999 88999999999999999999877666667788999999995 55787776655    5


Q ss_pred             EEEEEcccCC
Q 018293          233 IKGFDIRTAK  242 (358)
Q Consensus       233 i~i~d~~~~~  242 (358)
                      |++||+..++
T Consensus       471 Iklydm~~~K  480 (668)
T COG4946         471 IKLYDMDGGK  480 (668)
T ss_pred             EEEEecCCCe
Confidence            8899988754

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=1.1e-10  Score=100.61  Aligned_cols=249  Identities=12%  Similarity=0.247  Sum_probs=152.8

Q ss_pred             ceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec
Q 018293           51 CMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW  130 (358)
Q Consensus        51 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  130 (358)
                      |++|       +....++|+|+.||.++|..+.+........-+.            .......-..+.||+..|.-+.|
T Consensus        19 c~~W-------Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gla------------a~snLsmNQtLeGH~~sV~vvTW   79 (1189)
T KOG2041|consen   19 CAEW-------NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLA------------AASNLSMNQTLEGHNASVMVVTW   79 (1189)
T ss_pred             EEEE-------cccCCeEEeccccceeEEEEccccCCcccccccc------------cccccchhhhhccCcceEEEEEe
Confidence            7778       7788999999999999999987643322111111            11223445678899999999999


Q ss_pred             CCCCCcEEEEEEcCCeEEEEECCCCceeeee--cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee---
Q 018293          131 NKEFRNILASASADKQVKIWDVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---  205 (358)
Q Consensus       131 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---  205 (358)
                      +.+ .+.|-+...+|.|.+|-+-.+.-...+  ....+-|.+++|+.+| ..++....||.|.+=.+...+.-....   
T Consensus        80 Ne~-~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLkg~  157 (1189)
T KOG2041|consen   80 NEN-NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELKGQ  157 (1189)
T ss_pred             ccc-cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcchh
Confidence            988 678999999999999999887654443  2345778999999999 778888888887664443221100000   


Q ss_pred             -------------------------------------------------eecCCeeeEEEcC-------CCCCeEEEEec
Q 018293          206 -------------------------------------------------AVAADVESLAWDP-------HAEHSFVVSLE  229 (358)
Q Consensus       206 -------------------------------------------------~~~~~i~~~~~~~-------~~~~~~~~~~~  229 (358)
                                                                       .....+..+.|..       -+...++++..
T Consensus       158 ~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~  237 (1189)
T KOG2041|consen  158 LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA  237 (1189)
T ss_pred             eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc
Confidence                                                             0001122333321       12335666666


Q ss_pred             CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC---------cEEEEecCCCCceeeEe
Q 018293          230 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---------MVKLWDLSNNQPSCIAS  300 (358)
Q Consensus       230 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~  300 (358)
                      +|.+++..-.+..        .++..  ...-.+....|+++| ..|+.++.+.         .|.+|..-. +  .+..
T Consensus       238 nGr~QiMR~eND~--------~Pvv~--dtgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G-~--i~gt  303 (1189)
T KOG2041|consen  238 NGRMQIMRSENDP--------EPVVV--DTGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYG-H--IVGT  303 (1189)
T ss_pred             CceehhhhhcCCC--------CCeEE--ecccEeecceecCCC-cEEEEccCcccccCccccceEEEeccch-h--heEE
Confidence            6666664443331        12111  112457889999998 8888877653         345554322 2  2344


Q ss_pred             cCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       301 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      +......|++++|-..|-. +|. ..|+.|++=+++
T Consensus       304 lkvpg~~It~lsWEg~gLr-iA~-AvdsfiyfanIR  337 (1189)
T KOG2041|consen  304 LKVPGSCITGLSWEGTGLR-IAI-AVDSFIYFANIR  337 (1189)
T ss_pred             EecCCceeeeeEEcCCceE-EEE-EecceEEEEeec
Confidence            4445567888888776642 322 234555444443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.39  E-value=3.2e-12  Score=119.91  Aligned_cols=200  Identities=15%  Similarity=0.186  Sum_probs=151.9

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeec-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  199 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  199 (358)
                      +-..|.++.-+|. ..+.++|+.||.|++|....++.+..++ .....|+.+.|+.+| +.+..+..||.+.+|... .+
T Consensus      2207 ~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred             ccCceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC-CceeeeccCCceeecccC-Cc
Confidence            4567888888888 5588899999999999998887776664 234789999999999 778889999999999987 33


Q ss_pred             CccceeeecCCeeeEEEcCCCCCeEEEE---ecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEE
Q 018293          200 HSGFKWAVAADVESLAWDPHAEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  276 (358)
Q Consensus       200 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l  276 (358)
                      .......|......+.|-.   ..+++.   +.++.+.+||.....        .....-..|.+.++++++.|.. .+|
T Consensus      2284 ~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~--------~~s~v~~~H~~gaT~l~~~P~~-qll 2351 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPP--------MNSLVHTCHDGGATVLAYAPKH-QLL 2351 (2439)
T ss_pred             ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCc--------ccceeeeecCCCceEEEEcCcc-eEE
Confidence            3333445666777777764   245553   457899999987652        2222338899999999999987 899


Q ss_pred             EEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293          277 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       277 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                      ++|+.+|.|++||++..+.  ...++.         +. ... .+++|+..|.|+||++..-..++.....+
T Consensus      2352 isggr~G~v~l~D~rqrql--~h~~~~---------~~-~~~-~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQL--RHTFQA---------LD-TRE-YFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             EecCCcCcEEEeehHHHHH--HHHhhh---------hh-hhh-eeeccCcccceEEEEccccchhhcCchhh
Confidence            9999999999999988763  222321         44 444 58999999999999998877666544443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.38  E-value=3.2e-12  Score=119.84  Aligned_cols=181  Identities=18%  Similarity=0.292  Sum_probs=140.9

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      +|...+.+||+.||.|++|....++.+.....                          ..+..|+.+.|+.+ ++.+..+
T Consensus      2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt--------------------------~g~s~vtr~~f~~q-Gnk~~i~ 2269 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT--------------------------AGNSRVTRSRFNHQ-GNKFGIV 2269 (2439)
T ss_pred             CCCCceEEecCCCceEEEEeccCCCeEEEeec--------------------------cCcchhhhhhhccc-CCceeee
Confidence            67888999999999999999876554432221                          23378999999999 5678888


Q ss_pred             EcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEe---CCCcEEEEEcccCCCc-cceeeecCCeeeEEEc
Q 018293          142 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS---FDRSVVMKDARISTHS-GFKWAVAADVESLAWD  217 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~  217 (358)
                      ..||.+.+|.+. .++....+.|........|-..   .+++++   .++.+.+||....... .....|.+.++++++.
T Consensus      2270 d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2270 DGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYA 2345 (2439)
T ss_pred             ccCCceeecccC-CcceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEc
Confidence            999999999976 5667777889988888888763   456654   5788999997654332 2236788999999999


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~  294 (358)
                      | ...++++|+.+|.|++||++..         +..+.++.         +. . +.++++|+..|.++||++....
T Consensus      2346 P-~~qllisggr~G~v~l~D~rqr---------ql~h~~~~---------~~-~-~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2346 P-KHQLLISGGRKGEVCLFDIRQR---------QLRHTFQA---------LD-T-REYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             C-cceEEEecCCcCcEEEeehHHH---------HHHHHhhh---------hh-h-hheeeccCcccceEEEEccccc
Confidence            9 5669999999999999999976         44433332         33 2 3799999999999999998765

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.37  E-value=1.2e-11  Score=93.67  Aligned_cols=149  Identities=18%  Similarity=0.205  Sum_probs=103.4

Q ss_pred             CcEEEEEEcCCeEEEEECCCCc-eeeeecccccceeeEEEcCCCCcEEEEE-----eCCCcEEEEEcccCCCccceeeec
Q 018293          135 RNILASASADKQVKIWDVAAGK-CNLTLEHHTDKVQAVAWNHHSPQILLSG-----SFDRSVVMKDARISTHSGFKWAVA  208 (358)
Q Consensus       135 ~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~  208 (358)
                      .+-++++..||.+.+++.+.-. ....+..-...-.+.+....+ +.+.++     ..-+..+.|+++..+.........
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~  179 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL  179 (319)
T ss_pred             CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecc-cEEecCCcceEeeccceeeeccccccccccccccc
Confidence            3469999999999999976521 111111111111122233333 333322     123455667766554443333334


Q ss_pred             CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEE
Q 018293          209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  288 (358)
Q Consensus       209 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~  288 (358)
                      ..+.+++-+|...+++++|+.||.+.+||.++.        ..+...+..|..+|..+-|+|..+..|+++++||.+..|
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--------~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w  251 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--------AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW  251 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccc--------cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence            459999999988889999999999999999987        256667789999999999999888999999999999999


Q ss_pred             ecCC
Q 018293          289 DLSN  292 (358)
Q Consensus       289 d~~~  292 (358)
                      |..+
T Consensus       252 das~  255 (319)
T KOG4714|consen  252 DAST  255 (319)
T ss_pred             cCCC
Confidence            9874

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.37  E-value=2.6e-09  Score=100.13  Aligned_cols=305  Identities=16%  Similarity=0.223  Sum_probs=179.4

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEE--eccCC-CCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYIL--EESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE   78 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~   78 (358)
                      ++-++...++++...+     .+..+  +...+ ......    ..++.-+.|++|       |||+..|+..+.+|++.
T Consensus        82 ~yl~d~~~l~~~~~~G-----di~~~~~~~~~~~~~~E~V----G~vd~GI~a~~W-------SPD~Ella~vT~~~~l~  145 (928)
T PF04762_consen   82 QYLADSESLCIALASG-----DIILVREDPDPDEDEIEIV----GSVDSGILAASW-------SPDEELLALVTGEGNLL  145 (928)
T ss_pred             EeccCCCcEEEEECCc-----eEEEEEccCCCCCceeEEE----EEEcCcEEEEEE-------CCCcCEEEEEeCCCEEE
Confidence            4556666777776666     45554  21111 111111    234455567777       99999999999999998


Q ss_pred             EEEcccccCcCceeecCCccccccc----c-------cccCCce-----------eccccccCCCcccEEEEecCCCCCc
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKK----K-------KSKKGKK-----------SSIKYKKGSHTDSVLGLAWNKEFRN  136 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~  136 (358)
                      +.+- +.+.+....+........+.    |       ....++.           ......+. +...-..|+|-.| +.
T Consensus       146 ~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGD-G~  222 (928)
T PF04762_consen  146 LMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGD-GE  222 (928)
T ss_pred             EEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCC-Cc
Confidence            8753 22222222221111111000    0       0000000           00112233 5556778999999 66


Q ss_pred             EEEEEEc---C---CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeC---CCcEEEEEcccCCCcccee--
Q 018293          137 ILASASA---D---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---DRSVVMKDARISTHSGFKW--  205 (358)
Q Consensus       137 ~l~s~~~---d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~--  205 (358)
                      ++|+.+.   .   ..++||+-+ |....+-..-.+--.+++|.|.| +++++...   ...|.+|.-+..+......  
T Consensus       223 yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~  300 (928)
T PF04762_consen  223 YFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLRHGEFTLRF  300 (928)
T ss_pred             EEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcEeeeEecCC
Confidence            8888775   3   479999944 66544444333444578999999 77777654   3557777755443332222  


Q ss_pred             -eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcEEEEEeCCC
Q 018293          206 -AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDK  283 (358)
Q Consensus       206 -~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg  283 (358)
                       .....+..+.|++++ .+|++-..|. |++|-..+..-       -..+.+... ...+..+.|+|..+..|...+.+|
T Consensus       301 ~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHW-------YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g  371 (928)
T PF04762_consen  301 DPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHW-------YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNG  371 (928)
T ss_pred             CCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEE-------EEEEEEEccCCCCCCceEECCCCCCEEEEEecCC
Confidence             345678999999965 4777766555 99999987632       222222211 233455999998777788887777


Q ss_pred             cEEEEecC----CC----------------C--------------ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCe
Q 018293          284 MVKLWDLS----NN----------------Q--------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK  329 (358)
Q Consensus       284 ~i~i~d~~----~~----------------~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  329 (358)
                      .+..+++.    .+                .              |.+...+. ...+|.+++|++++.. +++-..||.
T Consensus       372 ~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~-~avl~~d~~  449 (928)
T PF04762_consen  372 QYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSR-FAVLTSDGS  449 (928)
T ss_pred             cEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCe-EEEEECCCC
Confidence            77665431    11                0              00111111 2467999999999884 788889999


Q ss_pred             EEEEEccCC
Q 018293          330 LEIWDTLSD  338 (358)
Q Consensus       330 i~vw~~~~~  338 (358)
                      |.+|.....
T Consensus       450 l~~~~~~~~  458 (928)
T PF04762_consen  450 LSIYEWDLK  458 (928)
T ss_pred             EEEEEecCC
Confidence            999986554

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.1e-09  Score=91.89  Aligned_cols=288  Identities=14%  Similarity=0.171  Sum_probs=177.1

Q ss_pred             CcccCCCcEEEEEEecCCC------ceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC
Q 018293            1 MTINPNDAVIVCARNEDDV------SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME   74 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d   74 (358)
                      ++|||..+.|++=+..-+.      ..-++.+|+...+....-+..-+......| -+       +||.|++|+|.-.. 
T Consensus       255 idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP-~f-------rWS~DdKy~Arm~~-  325 (698)
T KOG2314|consen  255 IDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWP-IF-------RWSHDDKYFARMTG-  325 (698)
T ss_pred             eecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccc-eE-------EeccCCceeEEecc-
Confidence            4799999999987554322      335788888877633322221111111111 23       45999999998775 


Q ss_pred             CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC-----CeEEE
Q 018293           75 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD-----KQVKI  149 (358)
Q Consensus        75 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~v~i  149 (358)
                      ..|.||+..+...+....                           -.-..|...+|+|. +++||--...     ..+.+
T Consensus       326 ~sisIyEtpsf~lld~Ks---------------------------lki~gIr~FswsP~-~~llAYwtpe~~~~parvtL  377 (698)
T KOG2314|consen  326 NSISIYETPSFMLLDKKS---------------------------LKISGIRDFSWSPT-SNLLAYWTPETNNIPARVTL  377 (698)
T ss_pred             ceEEEEecCceeeecccc---------------------------cCCccccCcccCCC-cceEEEEcccccCCcceEEE
Confidence            578899986533332111                           13356888899998 6666543221     24566


Q ss_pred             EECCCCceeeeecccccceeeEEEcCCCCcEEEEE----------eCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293          150 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG----------SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  219 (358)
Q Consensus       150 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  219 (358)
                      -.+-+++.+++-.-+.-.=..|.|..+| .+|+.-          +.-..+.|+.++..............+...+|.|.
T Consensus       378 ~evPs~~~iRt~nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~  456 (698)
T KOG2314|consen  378 MEVPSKREIRTKNLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPH  456 (698)
T ss_pred             EecCccceeeeccceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccC
Confidence            6666666665555444333456777777 555442          11124566777766666656677889999999997


Q ss_pred             CCCeEEEEec--CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE---eCCCcEEEEecCCCC
Q 018293          220 AEHSFVVSLE--DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG---STDKMVKLWDLSNNQ  294 (358)
Q Consensus       220 ~~~~~~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~---~~dg~i~i~d~~~~~  294 (358)
                      |+.+.+..+.  ..++.+|.+.+....     ...+..+..  ...+.+.|+|.| ++++.+   +..|.+.++|+....
T Consensus       457 gdkF~vi~g~~~k~tvsfY~~e~~~~~-----~~lVk~~dk--~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~  528 (698)
T KOG2314|consen  457 GDKFAVISGNTVKNTVSFYAVETNIKK-----PSLVKELDK--KFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYAD  528 (698)
T ss_pred             CCeEEEEEccccccceeEEEeecCCCc-----hhhhhhhcc--cccceEEEcCCC-cEEEEEEecccccceEEEecchhh
Confidence            7655444443  357899998853211     133444433  557889999999 666654   447889999988533


Q ss_pred             ceeeEecCCCCceeEEEEEcCCCCeEEEEEcc------CCeEEEEEccC
Q 018293          295 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS------KGKLEIWDTLS  337 (358)
Q Consensus       295 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~vw~~~~  337 (358)
                      .. ......| -..+.+.|.|.|+| +++++.      |..-++|++..
T Consensus       529 ~k-~~~~~eh-~~at~veWDPtGRY-vvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  529 LK-DTASPEH-FAATEVEWDPTGRY-VVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             hh-hccCccc-cccccceECCCCCE-EEEeeehhhhccccceEEEEeec
Confidence            21 1122223 34667899999998 555554      44567888764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.34  E-value=6.9e-10  Score=84.70  Aligned_cols=240  Identities=14%  Similarity=0.072  Sum_probs=152.1

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      .-.+||.|+..|...+|...+.+.....                          -..|...|+-+.=.-+....+..++.
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~--------------------------cd~snn~v~~~~r~cd~~~~~~i~sn  136 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQ--------------------------CDVSNNDVTLVKRYCDLKFPLNIASN  136 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceee--------------------------ecccccchhhhhhhcccccceeeccC
Confidence            4458999999999999999865443221                          11233333222211121234666788


Q ss_pred             CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce---eeecCCeeeEEEcCCC
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---WAVAADVESLAWDPHA  220 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~  220 (358)
                      |.++++.+++-+..........-.+.++.+++++ .++++.+....|..|.+.........   ......-.+..|+.. 
T Consensus       137 dht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~-  214 (344)
T KOG4532|consen  137 DHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN-  214 (344)
T ss_pred             CcceeEEEEecCcccceeeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC-
Confidence            9999999887654332222111237889999999 89999999999999998765443211   223445667888884 


Q ss_pred             CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc-EEEEEeCCCcEEEEecCCCCceeeE
Q 018293          221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLATGSTDKMVKLWDLSNNQPSCIA  299 (358)
Q Consensus       221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  299 (358)
                      ...+|++..||++.|||+|......    .........|.+.+..+.|++.|.- +|+..-.-+.+.+.|+++.....+.
T Consensus       215 ~~~FAv~~Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  215 DLQFAVVFQDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             cceEEEEecCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence            4589999999999999999874321    0112223458899999999985532 3333333567999999997643333


Q ss_pred             ecC------CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          300 SRN------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       300 ~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ...      .....|....|+.++....+ .+++ .+.=|++.+
T Consensus       291 ~i~~d~~~~~~tq~ifgt~f~~~n~s~~v-~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  291 VIPDDVERKHNTQHIFGTNFNNENESNDV-KNEL-QGAEYNILS  332 (344)
T ss_pred             ecCccccccccccccccccccCCCccccc-ccch-hhheeeccc
Confidence            222      12344778888888775333 3333 344455544

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=4.1e-09  Score=88.52  Aligned_cols=279  Identities=14%  Similarity=0.173  Sum_probs=171.3

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC-----C---
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS-----M---   73 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-----~---   73 (358)
                      .++++|++++.+..+      .+++++.....   ...-.  .. ....       .+.|||-|.+|.|=-     .   
T Consensus        41 ~~S~~G~lfA~~~~~------~v~i~~~~~~~---~~lt~--~~-~~~~-------~L~fSP~g~yL~T~e~~~i~~~~~  101 (566)
T KOG2315|consen   41 AYSNNGRLFAYSDNQ------VVKVFEIATLK---VVLCV--EL-KKTY-------DLLFSPKGNYLLTWEPWAIYGPKN  101 (566)
T ss_pred             EEcCCCcEEEEEcCC------eEEEEEccCCc---EEEEe--cc-ceee-------eeeecccccccccccccccccCCC
Confidence            478899999988444      88888887752   11111  11 1222       334588888887621     1   


Q ss_pred             --CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEE
Q 018293           74 --EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  151 (358)
Q Consensus        74 --dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd  151 (358)
                        .-.+.+|++.++.....+.                          ...+.. ++..|++| . .+++--..+.+.+|+
T Consensus       102 ~~~pn~~v~~vet~~~~s~~q--------------------------~k~Q~~-W~~qfs~d-E-sl~arlv~nev~f~~  152 (566)
T KOG2315|consen  102 ASNPNVLVYNVETGVQRSQIQ--------------------------KKMQNG-WVPQFSID-E-SLAARLVSNEVQFYD  152 (566)
T ss_pred             CCCCceeeeeeccceehhhee--------------------------hhhhcC-cccccccc-h-hhhhhhhcceEEEEe
Confidence              2357799988732221110                          012222 68899988 4 344444567899999


Q ss_pred             CCCCceeeeecccccceeeEEEcCCCCc-EEEE-----EeCCCcEEEEEcccCCCc---cceeeecCCeeeEEEcCCCCC
Q 018293          152 VAAGKCNLTLEHHTDKVQAVAWNHHSPQ-ILLS-----GSFDRSVVMKDARISTHS---GFKWAVAADVESLAWDPHAEH  222 (358)
Q Consensus       152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~-----~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~  222 (358)
                      +...+.+. -.-|...|+.+.++|.... .+++     .+.-+.+++|.......-   ....-....-..+.|++-+..
T Consensus       153 ~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~  231 (566)
T KOG2315|consen  153 LGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA  231 (566)
T ss_pred             cCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence            87743322 2235778999999998433 3333     244567999987632211   111112233455778876555


Q ss_pred             eEEEEec--C---------CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEE-EeCCCcEEEEec
Q 018293          223 SFVVSLE--D---------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-GSTDKMVKLWDL  290 (358)
Q Consensus       223 ~~~~~~~--d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~-~~~dg~i~i~d~  290 (358)
                      +|+..+.  |         .+++++++...         .....+ ...++|.++.|+|++..+.++ |-.=-.+.|||+
T Consensus       232 LLvLastdVDktn~SYYGEq~Lyll~t~g~---------s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl  301 (566)
T KOG2315|consen  232 LLVLASTDVDKTNASYYGEQTLYLLATQGE---------SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL  301 (566)
T ss_pred             EEEEEEEeecCCCccccccceEEEEEecCc---------eEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcC
Confidence            5555432  2         35777777622         233333 247899999999998544444 445667999999


Q ss_pred             CCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEcc--CCeEEEEEccCCCccccc
Q 018293          291 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       291 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~  344 (358)
                      +..   .+..+.  .++-+++-|+|.|++++++|-.  -|.|.|||+.+.+++.+.
T Consensus       302 r~~---~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~  352 (566)
T KOG2315|consen  302 RGK---PVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF  352 (566)
T ss_pred             CCC---EeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence            765   355544  5778889999999976665543  389999999997776543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.30  E-value=2.1e-09  Score=82.13  Aligned_cols=204  Identities=13%  Similarity=-0.004  Sum_probs=136.1

Q ss_pred             cEEEEEEcCCeEEEEECCCCce-eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeE
Q 018293          136 NILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  214 (358)
Q Consensus       136 ~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  214 (358)
                      -+||.|+..|...+|...+.+. .+....|...|+-+.=.-+....+..++.|.++++.++..+..........-.+.++
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~  164 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL  164 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence            3899999999999999986643 333333444333222222222446778888888888887654433222222337889


Q ss_pred             EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccE-EEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293          215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  293 (358)
Q Consensus       215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~  293 (358)
                      +++++ +.++++.+....|..|.+.....       ..+. ........-.+..|+... ..+|++..||++.|||++..
T Consensus       165 ~~snd-~~~~~~Vgds~~Vf~y~id~~se-------y~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  165 HYSND-PSWGSSVGDSRRVFRYAIDDESE-------YIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             EEcCC-CceEEEecCCCcceEEEeCCccc-------eeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEEeccc
Confidence            99995 55888888889999999987532       1222 222233444678899877 79999999999999999875


Q ss_pred             Cce---eeEecCCCCceeEEEEEcCCCCe-EEEEEccCCeEEEEEccCCCccccccccC
Q 018293          294 QPS---CIASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       294 ~~~---~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                      ...   .......|.+.+..+.|++.|.. +|...-.-+.+.+-|++++..........
T Consensus       236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~  294 (344)
T KOG4532|consen  236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD  294 (344)
T ss_pred             ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence            421   12234568999999999986632 34444556789999999988766544443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=1e-08  Score=88.47  Aligned_cols=196  Identities=12%  Similarity=0.033  Sum_probs=118.9

Q ss_pred             cEEEEecCCCCCcEEEEEEc---CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC--cEEEEEcccC
Q 018293          124 SVLGLAWNKEFRNILASASA---DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARIS  198 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~  198 (358)
                      .+..-.|+|++...++..+.   +..|.++|+.+++...... ..+......|+|||..++++.+.++  .|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            67788999996544554333   3569999998886544433 4455667889999966666665554  5777787666


Q ss_pred             CCccceeeecCCeeeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEE
Q 018293          199 THSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  276 (358)
Q Consensus       199 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l  276 (358)
                      +... ............|+|++..++++....+  .|.++|+..+..          ..+......  ...|+|+|..++
T Consensus       268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~----------~rlt~~g~~--~~~~SPDG~~Ia  334 (419)
T PRK04043        268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV----------EQVVFHGKN--NSSVSTYKNYIV  334 (419)
T ss_pred             cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe----------EeCccCCCc--CceECCCCCEEE
Confidence            5333 2223333445689998877777765555  566777765521          111111111  248999994444


Q ss_pred             EEEeCC--------CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCe--EEEEEccC
Q 018293          277 ATGSTD--------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLS  337 (358)
Q Consensus       277 ~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~vw~~~~  337 (358)
                      ++....        ..|.+.|+.++....+   ... .......|+|||+.++.+....+.  +.+.++..
T Consensus       335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L---T~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        335 YSSRETNNEFGKNTFNLYLISTNSDYIRRL---TAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             EEEcCCCcccCCCCcEEEEEECCCCCeEEC---CCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            444333        3688889888864322   222 223357899999976665544443  55666644

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.28  E-value=6.1e-09  Score=86.55  Aligned_cols=299  Identities=14%  Similarity=0.156  Sum_probs=174.5

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCe-----
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA-----   76 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~-----   76 (358)
                      .+||.|..|+.....      .|.+|...... .-....|.        .+..    +.|||.++||.+=+..+.     
T Consensus        39 ~~SP~G~~l~~~~~~------~V~~~~g~~~~-~l~~~~~~--------~V~~----~~fSP~~kYL~tw~~~pi~~pe~   99 (561)
T COG5354          39 SESPLGTYLFSEHAA------GVECWGGPSKA-KLVRFRHP--------DVKY----LDFSPNEKYLVTWSREPIIEPEI   99 (561)
T ss_pred             eecCcchheehhhcc------ceEEccccchh-heeeeecC--------Ccee----cccCcccceeeeeccCCccChhh
Confidence            578899998888554      33333333211 11111111        2222    245999999998765444     


Q ss_pred             ----------EEEEEcccccCcCceeecCCc----cccc-----c---ccc------cc--CCceeccccccCCCcccEE
Q 018293           77 ----------IEIWDLDVIDEVQPHVILGGI----DEEK-----K---KKK------SK--KGKKSSIKYKKGSHTDSVL  126 (358)
Q Consensus        77 ----------i~vw~~~~~~~~~~~~~~~~~----~~~~-----~---~~~------~~--~~~~~~~~~~~~~h~~~v~  126 (358)
                                +.+||+.++..+.........    +..+     +   ...      ..  ......+...+  ....|.
T Consensus       100 e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~l--r~~gi~  177 (561)
T COG5354         100 EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNL--RPVGIL  177 (561)
T ss_pred             ccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhc--ccccee
Confidence                      999999988766544333222    0000     0   000      00  00000000111  125677


Q ss_pred             EEecCCCCC-cEEEE-----EEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEE-Ee----------CCCc
Q 018293          127 GLAWNKEFR-NILAS-----ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLS-GS----------FDRS  189 (358)
Q Consensus       127 ~~~~~~~~~-~~l~s-----~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~----------~dg~  189 (358)
                      ..+|+|.+. ..||.     ....+.+++|.+..++.+.+-.-....-..+.|++.| .+++. .-          ....
T Consensus       178 dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g-~~ll~l~~t~~ksnKsyfgesn  256 (561)
T COG5354         178 DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG-KYLLVLVMTHTKSNKSYFGESN  256 (561)
T ss_pred             eEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC-ceEEEEEEEeeecccceeccce
Confidence            888888732 23333     3567789999988666554433223333468899888 44433 21          1246


Q ss_pred             EEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEE-EecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEe
Q 018293          190 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV-SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY  268 (358)
Q Consensus       190 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  268 (358)
                      +.+++++...... .....++|...+|.|.+..+.++ |..+-.+.++|++..          ..+.  .....=+.+.|
T Consensus       257 Lyl~~~~e~~i~V-~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----------l~~~--~Pe~~rNT~~f  323 (561)
T COG5354         257 LYLLRITERSIPV-EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----------LRFY--FPEQKRNTIFF  323 (561)
T ss_pred             EEEEeecccccce-eccccccceeeeecccCCceeEEecccccceeecccccc----------eEEe--cCCcccccccc
Confidence            7888887444433 33668899999999976655444 367888999999853          2222  23344567889


Q ss_pred             cCCCCcEEEEEeCC---CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEE-----ccCCeEEEEEccCCC
Q 018293          269 NPLVPNLLATGSTD---KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG-----GSKGKLEIWDTLSDA  339 (358)
Q Consensus       269 ~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~dg~i~vw~~~~~~  339 (358)
                      +|.+ ++++.++-|   |.+-+||....- .++..+.+.  ...-+.|+|+++++...-     -.|..|.|||+....
T Consensus       324 sp~~-r~il~agF~nl~gni~i~~~~~rf-~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         324 SPHE-RYILFAGFDNLQGNIEIFDPAGRF-KVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             cCcc-cEEEEecCCccccceEEeccCCce-EEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence            9988 777776654   669999987654 233344432  244578999999744332     236789999996543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.27  E-value=3.8e-08  Score=76.40  Aligned_cols=234  Identities=14%  Similarity=0.167  Sum_probs=131.3

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      +.+|++||+-- |..|.|-.....=  .                    .-.......+.-.-.=.-++|||| ..+||.+
T Consensus         6 ~~~Gk~lAi~q-d~~iEiRsa~Ddf--~--------------------si~~kcqVpkD~~PQWRkl~WSpD-~tlLa~a   61 (282)
T PF15492_consen    6 SSDGKLLAILQ-DQCIEIRSAKDDF--S--------------------SIIGKCQVPKDPNPQWRKLAWSPD-CTLLAYA   61 (282)
T ss_pred             cCCCcEEEEEe-ccEEEEEeccCCc--h--------------------heeEEEecCCCCCchheEEEECCC-CcEEEEE
Confidence            67898888774 6677776543210  0                    000011112223334568899999 7799999


Q ss_pred             EcCCeEEEEECCCCceeeeecc-------cccceeeEEEcCCC-----CcEEEEEeCCCcEEEEEcccCCCc--ccee--
Q 018293          142 SADKQVKIWDVAAGKCNLTLEH-------HTDKVQAVAWNHHS-----PQILLSGSFDRSVVMKDARISTHS--GFKW--  205 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~--~~~~--  205 (358)
                      ...|+|+++|+... .+..+..       ....|..|.|.+..     ...|++-..+|.++-|-+..+...  ....  
T Consensus        62 ~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsf  140 (282)
T PF15492_consen   62 ESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSF  140 (282)
T ss_pred             cCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEE
Confidence            99999999998753 3333321       23567777775432     246777888888888876433211  1111  


Q ss_pred             ----eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEE-Ee
Q 018293          206 ----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-GS  280 (358)
Q Consensus       206 ----~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~-~~  280 (358)
                          .....|.++.++|. .++|++|+....      ..+.             -.+....+++-..-.+.+.+..+ ..
T Consensus       141 sf~~~yp~Gi~~~vy~p~-h~LLlVgG~~~~------~~~~-------------s~a~~~GLtaWRiL~~~Pyyk~v~~~  200 (282)
T PF15492_consen  141 SFSSHYPHGINSAVYHPK-HRLLLVGGCEQN------QDGM-------------SKASSCGLTAWRILSDSPYYKQVTSS  200 (282)
T ss_pred             EecccCCCceeEEEEcCC-CCEEEEeccCCC------CCcc-------------ccccccCceEEEEcCCCCcEEEcccc
Confidence                13568999999995 456666543221      0000             00111122222222222222211 11


Q ss_pred             CCCc------EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          281 TDKM------VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       281 ~dg~------i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      .|+.      ..+|.+-+.+.  ..........|..|..||||. +||+...+|.|.+|++.+-....+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~--fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~~~~  266 (282)
T PF15492_consen  201 EDDITASSKRRGLLRIPSFKF--FSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRLQRS  266 (282)
T ss_pred             Cccccccccccceeeccceee--eeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchhhcc
Confidence            1211      22333333221  111123456799999999999 699999999999999988665443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=1.3e-11  Score=103.28  Aligned_cols=210  Identities=19%  Similarity=0.266  Sum_probs=146.1

Q ss_pred             ccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC-------CceeeeecccccceeeEEEcCCCCcEEEEEeCC
Q 018293          115 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD  187 (358)
Q Consensus       115 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  187 (358)
                      ...+.||+..|..++--.+ .+-+++++.|++|++|.++.       ..+..+++.|..+|.++.|..+. +.++  +-|
T Consensus       728 L~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~--ScD  803 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIA--SCD  803 (1034)
T ss_pred             eecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceee--ecc
Confidence            4467799999999877655 66899999999999999863       24677889999999999999887 5554  458


Q ss_pred             CcEEEEEcccCCCcccee--eecCCeeeEEEcCC-CCCeEEEE-ecCCeEEEEEcccCCCCCCCCCCCccEEE---eecC
Q 018293          188 RSVVMKDARISTHSGFKW--AVAADVESLAWDPH-AEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTL---HAHD  260 (358)
Q Consensus       188 g~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~-~~~~~~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~  260 (358)
                      |.|.+||.-.++......  ...+.+..+..-++ +..++.+| +...+|+++|.+....       .+....   .+..
T Consensus       804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~-------~~E~kVcna~~Pn  876 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW-------TCELKVCNAPGPN  876 (1034)
T ss_pred             CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccc-------eeeEEeccCCCCc
Confidence            999999987666543221  12233333433343 33355554 7788999999998732       111111   2334


Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEE-EEccCCC
Q 018293          261 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI-WDTLSDA  339 (358)
Q Consensus       261 ~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v-w~~~~~~  339 (358)
                      ..+.+++..+.| +.++++-..|.|.+.|.++++  .+............++- |..+ .++....|.++.+ |...++.
T Consensus       877 a~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~--vINswrpmecdllqlaa-psdq-~L~~saldHslaVnWhaldgi  951 (1034)
T KOG4190|consen  877 ALTRAIAVADKG-NKLAAALSNGCIAILDARNGK--VINSWRPMECDLLQLAA-PSDQ-ALAQSALDHSLAVNWHALDGI  951 (1034)
T ss_pred             hheeEEEeccCc-chhhHHhcCCcEEEEecCCCc--eeccCCcccchhhhhcC-chhH-HHHhhcccceeEeeehhcCCe
Confidence            568899999988 899999999999999999998  34444443334444432 4455 3677777888888 8766654


Q ss_pred             c
Q 018293          340 G  340 (358)
Q Consensus       340 ~  340 (358)
                      .
T Consensus       952 m  952 (1034)
T KOG4190|consen  952 M  952 (1034)
T ss_pred             e
Confidence            3

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.24  E-value=4e-08  Score=76.25  Aligned_cols=240  Identities=15%  Similarity=0.195  Sum_probs=127.4

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      |..+++|++||+....    .+++.  ...++.. .+...-..+.+..|   .|-  -++||||+.+||.+...|+|++|
T Consensus         3 ~~~~~~Gk~lAi~qd~----~iEiR--sa~Ddf~-si~~kcqVpkD~~P---QWR--kl~WSpD~tlLa~a~S~G~i~vf   70 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQ----CIEIR--SAKDDFS-SIIGKCQVPKDPNP---QWR--KLAWSPDCTLLAYAESTGTIRVF   70 (282)
T ss_pred             eeecCCCcEEEEEecc----EEEEE--eccCCch-heeEEEecCCCCCc---hhe--EEEECCCCcEEEEEcCCCeEEEE
Confidence            4567899999988542    33333  2222211 22222222222222   221  23459999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC-----CcEEEEEEcCCeEEEEECCCC
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-----RNILASASADKQVKIWDVAAG  155 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----~~~l~s~~~dg~v~iwd~~~~  155 (358)
                      |+...+...   +...             .     .....-..+|..+.|.+..     ...|+.-..+|.++=|-+..+
T Consensus        71 dl~g~~lf~---I~p~-------------~-----~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~g  129 (282)
T PF15492_consen   71 DLMGSELFV---IPPA-------------M-----SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVG  129 (282)
T ss_pred             ecccceeEE---cCcc-------------c-----ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcc
Confidence            987422211   0000             0     0011234567777765431     224666677888887765322


Q ss_pred             -----ceeeeec---ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEE
Q 018293          156 -----KCNLTLE---HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS  227 (358)
Q Consensus       156 -----~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  227 (358)
                           +....+.   .+...|.++.++|.. ++|++|+....      +.+.    .......+++-..-.+.+.+..+.
T Consensus       130 t~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~  198 (282)
T PF15492_consen  130 TNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVT  198 (282)
T ss_pred             cCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEcc
Confidence                 2333332   246789999999998 66666653322      0000    011122223222222222222221


Q ss_pred             ec-CCe------EEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          228 LE-DGT------IKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       228 ~~-dg~------i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      .. |+.      -.+|.+-+.          ..+.. ......|..|..+||| .+|++...+|.|.+|++.+.+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~----------~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  199 SSEDDITASSKRRGLLRIPSF----------KFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             ccCccccccccccceeeccce----------eeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence            11 111      122222111          11111 2235679999999999 8999999999999999988763

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=6.7e-09  Score=90.69  Aligned_cols=243  Identities=17%  Similarity=0.164  Sum_probs=167.1

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC-----
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-----  134 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----  134 (358)
                      .|+|.| ++|-|+. ..|.|-|..+.+.++                           .+.-|...|+.+.|.|..     
T Consensus        22 Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---------------------------sie~h~s~V~~VrWap~~~p~~l   72 (1062)
T KOG1912|consen   22 DWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---------------------------SIELHQSAVTSVRWAPAPSPRDL   72 (1062)
T ss_pred             ccCccc-eEEEecC-ceEEEEehhhhhhhh---------------------------ccccCccceeEEEeccCCCchhc
Confidence            346666 7777764 477788876544333                           455688999999997641     


Q ss_pred             ------CcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCC---CCcEEEEEeCCCcEEEEEcccCCCcccee
Q 018293          135 ------RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH---SPQILLSGSFDRSVVMKDARISTHSGFKW  205 (358)
Q Consensus       135 ------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  205 (358)
                            .-+||++...|.|.+||...+..+..++.|.+++..++|-+.   ...++++-....++.+|+..+++..-...
T Consensus        73 lS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~  152 (1062)
T KOG1912|consen   73 LSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD  152 (1062)
T ss_pred             cCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence                  236888888999999999999888899999999999999653   33567777778899999999988765444


Q ss_pred             eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCC------------------------
Q 018293          206 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK------------------------  261 (358)
Q Consensus       206 ~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~------------------------  261 (358)
                      .......|+.++|.+...+...+..|.+.+-+.-........  .+..+.-..|..                        
T Consensus       153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~p--gk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fi  230 (1062)
T KOG1912|consen  153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVP--GKEFQITSDHSDLAHLERETATGNSTTSTPASAYFI  230 (1062)
T ss_pred             cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCC--ceeEEEecCccchhhhhhhhhccccccCCCcchhHH
Confidence            455667889999988888888888888887766443221110  111111111111                        


Q ss_pred             -ceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC--CeEEEEEccCCeEEEEEccC
Q 018293          262 -AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS--PFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       262 -~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~vw~~~~  337 (358)
                       ....++|+|.-.+.++.. .-..+.++|++-.....+..++  .+.+.-+.+-|++  . .|.+.-.||.+.+|-.+.
T Consensus       231 ty~a~faf~p~~rn~lfi~-~prellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd-~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  231 TYCAQFAFSPHWRNILFIT-FPRELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRD-ALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             HHHHhhhcChhhhceEEEE-eccceEEEcchhhceeEEEEec--cCCcceeEeccCCCcc-eEEEEecCCeEEEEEeec
Confidence             122356788664555444 4567999999988754444444  3444455666654  4 578899999999998765

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.22  E-value=2.7e-08  Score=82.22  Aligned_cols=227  Identities=13%  Similarity=0.109  Sum_probs=150.1

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEe-cCCCCCcEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA-WNKEFRNILAS  140 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~l~s  140 (358)
                      +.||+.++-. ..|.|.+||-.+.....-..-+..             .+..   .....-.+..-+. |++-.+.+++.
T Consensus       275 nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl-------------~rk~---k~~k~~~pskyledfa~~~Gd~ia~  337 (668)
T COG4946         275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPL-------------DRKK---KQPKFVNPSKYLEDFAVVNGDYIAL  337 (668)
T ss_pred             CCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCcc-------------cccc---ccccccCHHHhhhhhccCCCcEEEE
Confidence            6788887755 358899999875433221111000             0000   0000111111222 55555778888


Q ss_pred             EEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC-cEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293          141 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-SVVMKDARISTHSGFKWAVAADVESLAWDPH  219 (358)
Q Consensus       141 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  219 (358)
                      .+. |...+.+...+-.++ + ++...|.-..+..+. .-++.|..|| .+-++|.++++... ....-+.|.++..+|+
T Consensus       338 VSR-GkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~d  412 (668)
T COG4946         338 VSR-GKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPD  412 (668)
T ss_pred             Eec-CcEEEECCCCCeeEE-c-CCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCC
Confidence            886 677777765554333 2 356668888888777 5788899999 89999999877544 3445577999999995


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC----cEEEEecCCCCc
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK----MVKLWDLSNNQP  295 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~  295 (358)
                      + ..++++.....+.++|+.++         .....-....+-|+.+.|+|++ +++|-+--+|    .|+++|+.+++.
T Consensus       413 G-K~~vvaNdr~el~vididng---------nv~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         413 G-KKVVVANDRFELWVIDIDNG---------NVRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             C-cEEEEEcCceEEEEEEecCC---------CeeEecccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCCeE
Confidence            4 58888888999999999988         3333334456789999999998 8888876665    499999999874


Q ss_pred             eeeEecCCCCceeEEEEEcCCCCeEEEEE
Q 018293          296 SCIASRNPKAGAVFSVAFSEDSPFVLAIG  324 (358)
Q Consensus       296 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  324 (358)
                      ..+.+-   .+.=.+-+|.|+++++...+
T Consensus       482 y~vTT~---ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         482 YDVTTP---TAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EEecCC---cccccCcccCCCCcEEEEEe
Confidence            333333   33344568999999865443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.20  E-value=3.8e-08  Score=94.24  Aligned_cols=168  Identities=9%  Similarity=0.152  Sum_probs=111.0

Q ss_pred             EEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecc---------------cccceeeEEEcCCCCcEEEEEeCCCc
Q 018293          125 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH---------------HTDKVQAVAWNHHSPQILLSGSFDRS  189 (358)
Q Consensus       125 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~l~~~~~dg~  189 (358)
                      ...++++|+++.++++.+.++.|++||..++... .+.+               .-.....++++|++..++++-+.++.
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            4588999965777888888899999998876532 1111               11235679999998556777777899


Q ss_pred             EEEEEcccCCCccce------------ee---------ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCC
Q 018293          190 VVMKDARISTHSGFK------------WA---------VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST  248 (358)
Q Consensus       190 i~i~d~~~~~~~~~~------------~~---------~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~  248 (358)
                      |++||+.++......            ..         .-.....+++++++ +++++-..++.|++||..++.......
T Consensus       764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG  842 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAG  842 (1057)
T ss_pred             EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEec
Confidence            999998765421100            00         01134688899855 578888889999999997652110000


Q ss_pred             CCCc----cEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          249 SQQS----SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       249 ~~~~----~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      ....    -....+.-.....++++++| +++++-+.++.|++||+.+++.
T Consensus       843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        843 TGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCcc
Confidence            0000    00011122356789999998 7888888899999999988753

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=2.4e-08  Score=84.07  Aligned_cols=279  Identities=13%  Similarity=0.204  Sum_probs=161.1

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC------
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME------   74 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d------   74 (358)
                      +.+||-|..|++-...+      +.+|-...-.....+.|.         .+.++    .|||..+||+|=+..      
T Consensus       216 v~wSP~GTYL~t~Hk~G------I~lWGG~~f~r~~RF~Hp---------~Vq~i----dfSP~EkYLVT~s~~p~~~~~  276 (698)
T KOG2314|consen  216 VRWSPKGTYLVTFHKQG------IALWGGESFDRIQRFYHP---------GVQFI----DFSPNEKYLVTYSPEPIIVEE  276 (698)
T ss_pred             EEecCCceEEEEEeccc------eeeecCccHHHHHhccCC---------Cceee----ecCCccceEEEecCCccccCc
Confidence            35789999998886553      444443331111222222         23333    459999999986532      


Q ss_pred             -----CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEE
Q 018293           75 -----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  149 (358)
Q Consensus        75 -----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i  149 (358)
                           ..+.|||+.++...+.+....                        +....-.-..||.+ .+++|.-.. ..|.|
T Consensus       277 ~d~e~~~l~IWDI~tG~lkrsF~~~~------------------------~~~~~WP~frWS~D-dKy~Arm~~-~sisI  330 (698)
T KOG2314|consen  277 DDNEGQQLIIWDIATGLLKRSFPVIK------------------------SPYLKWPIFRWSHD-DKYFARMTG-NSISI  330 (698)
T ss_pred             ccCCCceEEEEEccccchhcceeccC------------------------CCccccceEEeccC-CceeEEecc-ceEEE
Confidence                 478999999988776554321                        11112234579988 667776655 57999


Q ss_pred             EECCCCceeeeecccccceeeEEEcCCCCcEEEEEeC-----CCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeE
Q 018293          150 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-----DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF  224 (358)
Q Consensus       150 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  224 (358)
                      |+..+..++..-.-.-..|....|+|.+ ++|+-=..     -..+.+..+-+.+.+....-+.-.-..+-|..++. +|
T Consensus       331 yEtpsf~lld~Kslki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd-yL  408 (698)
T KOG2314|consen  331 YETPSFMLLDKKSLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD-YL  408 (698)
T ss_pred             EecCceeeecccccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc-EE
Confidence            9977654433222334668889999987 66654322     12344444444433332211221222344555333 44


Q ss_pred             EEE----------ecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC--CCcEEEEecCC
Q 018293          225 VVS----------LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSN  292 (358)
Q Consensus       225 ~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--dg~i~i~d~~~  292 (358)
                      +.-          +.-.++.|+.++...        .++.... -...|...+|-|.|.++.+..+.  ..++.+|.+++
T Consensus       409 cvkvdR~tK~~~~g~f~n~eIfrireKd--------Ipve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~  479 (698)
T KOG2314|consen  409 CVKVDRHTKSKVKGQFSNLEIFRIREKD--------IPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET  479 (698)
T ss_pred             EEEEEeeccccccceEeeEEEEEeeccC--------CCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence            332          122246677777652        3333333 35678899999999554443333  34688898874


Q ss_pred             --CCceeeEecCCCCceeEEEEEcCCCCeEEEEE--ccCCeEEEEEccC
Q 018293          293 --NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG--GSKGKLEIWDTLS  337 (358)
Q Consensus       293 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~dg~i~vw~~~~  337 (358)
                        .++..+..+.  ....+.+.|+|.|+++++.+  |..|.+.++|+..
T Consensus       480 ~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  480 NIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             CCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence              2233333333  25577899999999755443  4578999999874

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.19  E-value=1.5e-07  Score=75.96  Aligned_cols=223  Identities=14%  Similarity=0.090  Sum_probs=139.6

Q ss_pred             ccC-CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecC-CCCCcEE
Q 018293           61 DRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNIL  138 (358)
Q Consensus        61 ~s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l  138 (358)
                      |.+ ++.++++--..+.|..|+..+.....                          ..   . .....+.+. ++ + .+
T Consensus         7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------------------------~~---~-~~~~G~~~~~~~-g-~l   54 (246)
T PF08450_consen    7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------------------------ID---L-PGPNGMAFDRPD-G-RL   54 (246)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTTEEEE--------------------------EE---S-SSEEEEEEECTT-S-EE
T ss_pred             EECCCCEEEEEEcCCCEEEEEECCCCeEEE--------------------------Ee---c-CCCceEEEEccC-C-EE
Confidence            355 78888888788999999987533211                          01   1 116666777 55 4 45


Q ss_pred             EEEEcCCeEEEEECCCCceeeeecc-----cccceeeEEEcCCCCcEEEEEeCC--------CcEEEEEcccCCCcccee
Q 018293          139 ASASADKQVKIWDVAAGKCNLTLEH-----HTDKVQAVAWNHHSPQILLSGSFD--------RSVVMKDARISTHSGFKW  205 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~  205 (358)
                      +.+..+ .+.++|..+++.......     .....+.+++.++| ++.++....        |.+..++.. ++ .....
T Consensus        55 ~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~  130 (246)
T PF08450_consen   55 YVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVA  130 (246)
T ss_dssp             EEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEE
T ss_pred             EEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-Ce-EEEEe
Confidence            555554 456669988865433332     34567899999999 666665543        456666666 33 23234


Q ss_pred             eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcE
Q 018293          206 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  285 (358)
Q Consensus       206 ~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i  285 (358)
                      ..-...+.++|+|++..++++-+..+.|..|++.......  ........+....+..-.+++..+| ++.++....+.|
T Consensus       131 ~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I  207 (246)
T PF08450_consen  131 DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL--SNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRI  207 (246)
T ss_dssp             EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE--EEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEE
T ss_pred             cCcccccceEECCcchheeecccccceeEEEeccccccce--eeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEE
Confidence            4456678999999776566677888999999997542100  0001111222222347889999988 777777788999


Q ss_pred             EEEecCCCCceeeEecCCCCceeEEEEEc-CCCCeEEEEEc
Q 018293          286 KLWDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGG  325 (358)
Q Consensus       286 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~  325 (358)
                      .++|.+ ++........  ...+++++|. ++...+++|.+
T Consensus       208 ~~~~p~-G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  208 VVFDPD-GKLLREIELP--VPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             EEEETT-SCEEEEEE-S--SSSEEEEEEESTTSSEEEEEEB
T ss_pred             EEECCC-ccEEEEEcCC--CCCEEEEEEECCCCCEEEEEeC
Confidence            999988 6644444444  3478999994 67666777653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.18  E-value=6.9e-08  Score=83.18  Aligned_cols=226  Identities=15%  Similarity=0.110  Sum_probs=136.4

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEE-EecCCCCCcEEEEEE
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS  142 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~  142 (358)
                      ++..+++++.+|.+..+|..+++.......                            ...+.+ ...  . +..++.++
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----------------------------~~~~~~~p~v--~-~~~v~v~~  152 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL----------------------------SSEVLSPPLV--A-NGLVVVRT  152 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeecc----------------------------CceeecCCEE--E-CCEEEEEC
Confidence            567788888999999999987665432111                            011111 111  1 23567778


Q ss_pred             cCCeEEEEECCCCceeeeeccccccee-----eEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee-ecC---C---
Q 018293          143 ADKQVKIWDVAAGKCNLTLEHHTDKVQ-----AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-VAA---D---  210 (358)
Q Consensus       143 ~dg~v~iwd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~---~---  210 (358)
                      .+|.+..||.++|+.+.++........     +....  + ..++.+..++.+..+|.++++....... ...   .   
T Consensus       153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~  229 (377)
T TIGR03300       153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER  229 (377)
T ss_pred             CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence            899999999999998877654322111     11111  2 3577788889999999988765321110 000   0   


Q ss_pred             ---e-eeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEE
Q 018293          211 ---V-ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK  286 (358)
Q Consensus       211 ---i-~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~  286 (358)
                         + ....+.   +..+++++.+|.+..||..++         +.......  ........  .+ ..+++++.+|.+.
T Consensus       230 ~~~~~~~p~~~---~~~vy~~~~~g~l~a~d~~tG---------~~~W~~~~--~~~~~p~~--~~-~~vyv~~~~G~l~  292 (377)
T TIGR03300       230 LVDVDGDPVVD---GGQVYAVSYQGRVAALDLRSG---------RVLWKRDA--SSYQGPAV--DD-NRLYVTDADGVVV  292 (377)
T ss_pred             hhccCCccEEE---CCEEEEEEcCCEEEEEECCCC---------cEEEeecc--CCccCceE--eC-CEEEEECCCCeEE
Confidence               0 111111   237788888999999999887         33333321  11122222  23 5777888899999


Q ss_pred             EEecCCCCceeeEecCCCC-ceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          287 LWDLSNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       287 i~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      .+|..+++.  +....... ....+...  .+. .+++++.+|.|+++|..+++.+.+.-
T Consensus       293 ~~d~~tG~~--~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       293 ALDRRSGSE--LWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDGSFVARLK  347 (377)
T ss_pred             EEECCCCcE--EEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            999998873  33321111 11222222  344 46778999999999999998876543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.18  E-value=1.3e-09  Score=87.72  Aligned_cols=161  Identities=16%  Similarity=0.204  Sum_probs=109.9

Q ss_pred             eEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc---ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC
Q 018293          170 AVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD  246 (358)
Q Consensus       170 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~  246 (358)
                      .+..++.+ ++++++..+....+++.+......   .........+++.+..+.. ...++..-|.++-+|+-+...   
T Consensus        67 ~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~~---  141 (390)
T KOG3914|consen   67 LVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDT-SVLVADKAGDVYSFDILSADS---  141 (390)
T ss_pred             ccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccc-eEEEEeecCCceeeeeecccc---
Confidence            34455565 777777777777677766544311   1122333445555555333 455554555555555544211   


Q ss_pred             CCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe-cCCCCceeEEEEEcCCCCeEEEEEc
Q 018293          247 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGG  325 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~  325 (358)
                          .+...+-+|-+.++.++++||+ ++++++..|..|+|-.......  +.. .-+|...|..++.-++.  .|++||
T Consensus       142 ----~~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~--IesfclGH~eFVS~isl~~~~--~LlS~s  212 (390)
T KOG3914|consen  142 ----GRCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFV--IESFCLGHKEFVSTISLTDNY--LLLSGS  212 (390)
T ss_pred             ----cCcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccc--hhhhccccHhheeeeeeccCc--eeeecC
Confidence                2334556899999999999998 9999999999999987765442  222 34699999999998775  488999


Q ss_pred             cCCeEEEEEccCCCccccc
Q 018293          326 SKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       326 ~dg~i~vw~~~~~~~~~~~  344 (358)
                      .|++|++||+.+|+++...
T Consensus       213 GD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  213 GDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             CCCcEEEEecccCCccccc
Confidence            9999999999999998643

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=6.6e-09  Score=89.55  Aligned_cols=194  Identities=9%  Similarity=0.020  Sum_probs=112.3

Q ss_pred             CccccCCCce-EEecCC---CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC
Q 018293           58 PLKDREKGNF-MAVGSM---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE  133 (358)
Q Consensus        58 ~~~~s~~~~~-l~~g~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  133 (358)
                      .+.|+|||+. ++..+.   +..|.++|+.+++...                            +....+......|+|+
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----------------------------lt~~~g~~~~~~~SPD  243 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----------------------------IASSQGMLVVSDVSKD  243 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----------------------------EecCCCcEEeeEECCC
Confidence            4456999984 554333   3568888876543211                            1113344566789999


Q ss_pred             CCcEEEEEEcC--CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC--cEEEEEcccCCCccceeeecC
Q 018293          134 FRNILASASAD--KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAA  209 (358)
Q Consensus       134 ~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~  209 (358)
                      |..++++.+.+  ..|.++|+.+++.. .+..+........|+|||..++++....+  .|.++|+.+++.......  +
T Consensus       244 G~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g  320 (419)
T PRK04043        244 GSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--G  320 (419)
T ss_pred             CCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--C
Confidence            76666666555  45777788777643 34333333445689999955555555545  477777776655332221  1


Q ss_pred             CeeeEEEcCCCCCeEEEEecC--------CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC
Q 018293          210 DVESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  281 (358)
Q Consensus       210 ~i~~~~~~~~~~~~~~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~  281 (358)
                      . ....|+|++..++++....        ..|.+.|+..+.          ...+... .......|+|||..++++...
T Consensus       321 ~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~----------~~~LT~~-~~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        321 K-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY----------IRRLTAN-GVNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             C-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC----------eEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence            1 2348999877666665443        367888887652          2222222 223358899999444444433


Q ss_pred             CCc--EEEEecCCCC
Q 018293          282 DKM--VKLWDLSNNQ  294 (358)
Q Consensus       282 dg~--i~i~d~~~~~  294 (358)
                      .+.  +.+.++....
T Consensus       389 ~~~~~L~~~~l~g~~  403 (419)
T PRK04043        389 GNQSALGIIRLNYNK  403 (419)
T ss_pred             CCcEEEEEEecCCCe
Confidence            333  6666765543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.16  E-value=2.3e-09  Score=86.42  Aligned_cols=160  Identities=13%  Similarity=0.124  Sum_probs=108.2

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      .+..++++++||++..+....++++......                     .+.............+..+..+.. ...
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~---------------------~kl~~~~~v~~~~~ai~~~~~~~s-v~v  124 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKG---------------------AKLLDVSCVPKRPTAISFIREDTS-VLV  124 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCc---------------------ceeeeEeecccCcceeeeeeccce-EEE
Confidence            3446899999999998888888887643320                     001111111112233444444332 222


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-cceeeecCCeeeEEE
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAW  216 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~  216 (358)
                      .-.++....+.+|....+.+ ..+-+|-..++.++|+||+ ++++++..|..|++-.....-.+ ....+|...|..++.
T Consensus       125 ~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl  202 (390)
T KOG3914|consen  125 ADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISL  202 (390)
T ss_pred             EeecCCceeeeeecccccCc-chhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhhccccHhheeeeee
Confidence            22334455666776665443 3445699999999999999 99999999999999766543332 345679999999999


Q ss_pred             cCCCCCeEEEEecCCeEEEEEcccCCC
Q 018293          217 DPHAEHSFVVSLEDGTIKGFDIRTAKS  243 (358)
Q Consensus       217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~  243 (358)
                      -+  ++.+++++.|++|++||+++++.
T Consensus       203 ~~--~~~LlS~sGD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  203 TD--NYLLLSGSGDKTLRLWDITSGKL  227 (390)
T ss_pred             cc--CceeeecCCCCcEEEEecccCCc
Confidence            87  34689999999999999999854

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=2.9e-10  Score=89.71  Aligned_cols=177  Identities=18%  Similarity=0.264  Sum_probs=126.1

Q ss_pred             ecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC----Cccce
Q 018293          129 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST----HSGFK  204 (358)
Q Consensus       129 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~  204 (358)
                      +|+-+-.-+-++.+.+-.|-+-|++++-. +.|. ..+.|.++.|...+ +++..|+.+|.|..+|++...    .....
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            56533112235666777899999988743 3444 56779999999877 899999999999999999762    33445


Q ss_pred             eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEE--EecCCCCcEEEEEeCC
Q 018293          205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI--SYNPLVPNLLATGSTD  282 (358)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i--~~~~~~~~~l~~~~~d  282 (358)
                      .-|.+.|+++..-...+..+++++.+|.|++||+|..+.      ...+..+.+|...-.-+  -+.+.. ..+++++.|
T Consensus       295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~------~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdD  367 (425)
T KOG2695|consen  295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC------KKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDD  367 (425)
T ss_pred             EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc------ccceeeeeccccccccccccccccc-ceEEEccCe
Confidence            678899999887775667899999999999999998632      13377778875433333  233433 688889999


Q ss_pred             CcEEEEecCCCCceeeEecCCC--CceeEEEEEcC
Q 018293          283 KMVKLWDLSNNQPSCIASRNPK--AGAVFSVAFSE  315 (358)
Q Consensus       283 g~i~i~d~~~~~~~~~~~~~~~--~~~v~~~~~~~  315 (358)
                      ...+||.+..++..+...+...  ...+.+++|..
T Consensus       368 cytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  368 CYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             eEEEEEecccCceeeccCCCCccccccccceehhc
Confidence            9999999999986554444322  23455666654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.13  E-value=3.3e-07  Score=76.04  Aligned_cols=241  Identities=11%  Similarity=0.082  Sum_probs=133.2

Q ss_pred             ccCCCcEEEEEEe---------cCCCceEEEEEEeccCCCCCceEeeceeecCCccc-ceeeecCCccccCCCceEEecC
Q 018293            3 INPNDAVIVCARN---------EDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPL-CMAWLDCPLKDREKGNFMAVGS   72 (358)
Q Consensus         3 ~~p~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~   72 (358)
                      ++|+++.|.++..         +.|    .|.+||....+     ...+..++..|- .+.-.+..++++|||++|++..
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d----~V~v~D~~t~~-----~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n  123 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTD----YVEVIDPQTHL-----PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ  123 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCC----EEEEEECccCc-----EEeEEccCCCchhhccCccceEEECCCCCEEEEec
Confidence            7999999999977         443    78888887641     112222222211 0111112345699999999876


Q ss_pred             -C-CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEE
Q 018293           73 -M-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  150 (358)
Q Consensus        73 -~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  150 (358)
                       . +..|.+.|+.+.+.+....+.                            +...-...+++ ..+  +-+.||.....
T Consensus       124 ~~p~~~V~VvD~~~~kvv~ei~vp----------------------------~~~~vy~t~e~-~~~--~~~~Dg~~~~v  172 (352)
T TIGR02658       124 FSPSPAVGVVDLEGKAFVRMMDVP----------------------------DCYHIFPTAND-TFF--MHCRDGSLAKV  172 (352)
T ss_pred             CCCCCEEEEEECCCCcEEEEEeCC----------------------------CCcEEEEecCC-ccE--EEeecCceEEE
Confidence             3 689999999876655543321                            11111112221 111  12234443333


Q ss_pred             ECCC-Ccee----eeecccccceee-EEEcC-CCCcEEEEEeCCCcEEEEEcccCCCccc-eee-----------ecCCe
Q 018293          151 DVAA-GKCN----LTLEHHTDKVQA-VAWNH-HSPQILLSGSFDRSVVMKDARISTHSGF-KWA-----------VAADV  211 (358)
Q Consensus       151 d~~~-~~~~----~~~~~~~~~v~~-~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~-----------~~~~i  211 (358)
                      .+.+ ++..    ..+.....++.. -.|.+ ++ ..+....+ |.|.+.|+........ .+.           .....
T Consensus       173 ~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~  250 (352)
T TIGR02658       173 GYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW  250 (352)
T ss_pred             EecCCCceEEeeeeeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence            2221 1110    111110011100 03455 66 66666655 9999999654332110 010           12234


Q ss_pred             eeEEEcCCCCCeEEEEe---------cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe-C
Q 018293          212 ESLAWDPHAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-T  281 (358)
Q Consensus       212 ~~~~~~~~~~~~~~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~  281 (358)
                      .-++++++++.+++...         ..+.|.++|..+.         +.+..+.. ...+..++++||+..+|++.. .
T Consensus       251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---------kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~  320 (352)
T TIGR02658       251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---------KRLRKIEL-GHEIDSINVSQDAKPLLYALSTG  320 (352)
T ss_pred             eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC---------eEEEEEeC-CCceeeEEECCCCCeEEEEeCCC
Confidence            45999997775555332         2257999999887         55655554 356889999999942666555 6


Q ss_pred             CCcEEEEecCCCCc
Q 018293          282 DKMVKLWDLSNNQP  295 (358)
Q Consensus       282 dg~i~i~d~~~~~~  295 (358)
                      ++.|.++|..+++.
T Consensus       321 s~~VsViD~~t~k~  334 (352)
T TIGR02658       321 DKTLYIFDAETGKE  334 (352)
T ss_pred             CCcEEEEECcCCeE
Confidence            78899999999873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.12  E-value=2.9e-09  Score=80.97  Aligned_cols=152  Identities=16%  Similarity=0.186  Sum_probs=98.8

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      +-.++.++++..||.+.+++.+.........                         ...|.+ -.+.+.... ++.+.++
T Consensus        98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i-------------------------~~~~~~-~as~~~~~~-~~~i~s~  150 (319)
T KOG4714|consen   98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRI-------------------------PSIHSG-SASRKICRH-GNSILSG  150 (319)
T ss_pred             cccCCceEecCCCceEEEEechHHHhhhhhc-------------------------cccccc-ccccceeec-ccEEecC
Confidence            3457789999999999999986411111000                         000111 111122222 2233332


Q ss_pred             E-----cCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-cceeeecCCeeeEE
Q 018293          142 S-----ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLA  215 (358)
Q Consensus       142 ~-----~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~  215 (358)
                      .     .-+..+.|+++..+....-......|.+++-+|...+++++|+.||.+.+||.+....+ .....|+.+++.+-
T Consensus       151 ~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~  230 (319)
T KOG4714|consen  151 GCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVH  230 (319)
T ss_pred             CcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhhee
Confidence            1     12335556554333222112223449999999988789999999999999999987543 34557899999999


Q ss_pred             EcCCCCCeEEEEecCCeEEEEEccc
Q 018293          216 WDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       216 ~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      |+|.++..++++++||.+..||..+
T Consensus       231 FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  231 FHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccCCCchheeEecCCCcEEEEcCCC
Confidence            9999999999999999999999874

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.11  E-value=1e-09  Score=95.10  Aligned_cols=222  Identities=18%  Similarity=0.258  Sum_probs=154.8

Q ss_pred             ccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCC-cEEE
Q 018293           61 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR-NILA  139 (358)
Q Consensus        61 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~  139 (358)
                      .+|.|+-+|.++.-|.+ +-|++..-.  +...                     .+.  -..-.|-...|+|... .+-+
T Consensus        32 i~p~grdi~lAsr~gl~-i~dld~p~~--ppr~---------------------l~h--~tpw~vad~qws~h~a~~~wi   85 (1081)
T KOG0309|consen   32 INPSGRDIVLASRQGLY-IIDLDDPFT--PPRW---------------------LHH--ITPWQVADVQWSPHPAKPYWI   85 (1081)
T ss_pred             eccccchhhhhhhcCeE-EEeccCCCC--Ccee---------------------eec--cCcchhcceecccCCCCceeE
Confidence            37889989999887754 556653111  1000                     000  1112355667776521 2333


Q ss_pred             EEEcCCeEEEEECCCC---ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-eecCCeeeEE
Q 018293          140 SASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLA  215 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~  215 (358)
                      +......-.+|++...   ..-..+.+|...|+.+.|+|+.+..+++++.|-.+..||++........+ .-......++
T Consensus        86 Vsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVk  165 (1081)
T KOG0309|consen   86 VSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVK  165 (1081)
T ss_pred             EecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceee
Confidence            3344455678887533   33445678999999999999999999999999999999999876554333 3456678899


Q ss_pred             EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      |+..+++ +.+.+..+.|++||.+.+        ..++..+.+|...|++++|...-...+.+.+.||+|+.||......
T Consensus       166 wnyk~p~-vlasshg~~i~vwd~r~g--------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~  236 (1081)
T KOG0309|consen  166 WNYKDPN-VLASSHGNDIFVWDLRKG--------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT  236 (1081)
T ss_pred             ecccCcc-hhhhccCCceEEEeccCC--------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence            9986665 455557778999999998        4788899999999999999876556889999999999999876543


Q ss_pred             eeeEecCCCCceeEEEEEcCCCC
Q 018293          296 SCIASRNPKAGAVFSVAFSEDSP  318 (358)
Q Consensus       296 ~~~~~~~~~~~~v~~~~~~~~~~  318 (358)
                      ...... .-..+|..-++.|-|.
T Consensus       237 e~~~~v-tt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  237 ESKRTV-TTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             ccceec-cccCcceeccccccCc
Confidence            222222 2345777778887554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.11  E-value=1.6e-07  Score=80.85  Aligned_cols=221  Identities=10%  Similarity=0.081  Sum_probs=125.3

Q ss_pred             CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293           65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  144 (358)
Q Consensus        65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  144 (358)
                      +..++.++.+|.|+.||..+++.........                  ..........++    .. + + .++.+..+
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~------------------~~~~~~~~~sp~----~~-~-~-~v~~~~~~  199 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVT------------------PALTLRGSASPV----IA-D-G-GVLVGFAG  199 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCC------------------CceeecCCCCCE----EE-C-C-EEEEECCC
Confidence            4567777789999999998766543221100                  000000011111    11 2 2 57778888


Q ss_pred             CeEEEEECCCCceeeeeccccc----ce---eeEEEcC--CCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEE
Q 018293          145 KQVKIWDVAAGKCNLTLEHHTD----KV---QAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA  215 (358)
Q Consensus       145 g~v~iwd~~~~~~~~~~~~~~~----~v---~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  215 (358)
                      +.+..+|.++|+.+........    .+   ..+.-+|  .+ ..++.++.+|.+..+|.++++..-.. .. .......
T Consensus       200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~-~~vy~~~~~g~l~a~d~~tG~~~W~~-~~-~~~~~p~  276 (377)
T TIGR03300       200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDG-GQVYAVSYQGRVAALDLRSGRVLWKR-DA-SSYQGPA  276 (377)
T ss_pred             CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEEC-CEEEEEEcCCEEEEEECCCCcEEEee-cc-CCccCce
Confidence            9999999999987655431100    00   0000011  23 46778888999999999887653311 11 1112222


Q ss_pred             EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293          216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~  294 (358)
                      .   .+..+++++.+|.+..+|..++         +.+...... .....+....  + ..+++++.+|.|+++|..+++
T Consensus       277 ~---~~~~vyv~~~~G~l~~~d~~tG---------~~~W~~~~~~~~~~ssp~i~--g-~~l~~~~~~G~l~~~d~~tG~  341 (377)
T TIGR03300       277 V---DDNRLYVTDADGVVVALDRRSG---------SELWKNDELKYRQLTAPAVV--G-GYLVVGDFEGYLHWLSREDGS  341 (377)
T ss_pred             E---eCCEEEEECCCCeEEEEECCCC---------cEEEccccccCCccccCEEE--C-CEEEEEeCCCEEEEEECCCCC
Confidence            2   2347788889999999999887         333332111 1112222222  3 688889999999999999988


Q ss_pred             ceeeEecCCCCceeE-EEEEcCCCCeEEEEEccCCeEEEE
Q 018293          295 PSCIASRNPKAGAVF-SVAFSEDSPFVLAIGGSKGKLEIW  333 (358)
Q Consensus       295 ~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~vw  333 (358)
                      .  +.....+...+. +..+. +++  |+.++.||.|+.+
T Consensus       342 ~--~~~~~~~~~~~~~sp~~~-~~~--l~v~~~dG~l~~~  376 (377)
T TIGR03300       342 F--VARLKTDGSGIASPPVVV-GDG--LLVQTRDGDLYAF  376 (377)
T ss_pred             E--EEEEEcCCCccccCCEEE-CCE--EEEEeCCceEEEe
Confidence            4  334443333322 22332 343  5567889998765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=8.4e-10  Score=87.18  Aligned_cols=171  Identities=15%  Similarity=0.195  Sum_probs=120.2

Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCC
Q 018293          172 AWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ  251 (358)
Q Consensus       172 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~  251 (358)
                      +|+-+-..+-++.+.+-.+.+-|+.++-...  +...+.|.+..|.. ..+++..|+.+|.|..+|+|....-.    ..
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--f~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~----~~  290 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--FQSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGN----GW  290 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccccc--cccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCC----Cc
Confidence            5553322233556667788888888775544  23667888888987 45699999999999999999863211    12


Q ss_pred             ccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc-eeeEecCCCCceeEE--EEEcCCCCeEEEEEccCC
Q 018293          252 SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFS--VAFSEDSPFVLAIGGSKG  328 (358)
Q Consensus       252 ~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~v~~--~~~~~~~~~~l~~~~~dg  328 (358)
                      +. ...-|.+.|+++..-...+.+|++.+.+|+|++||.+.-+. ..+....+|...-.-  +-..+... .+++++.|-
T Consensus       291 ~a-~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDc  368 (425)
T KOG2695|consen  291 CA-QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDC  368 (425)
T ss_pred             ce-EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc-eEEEccCee
Confidence            22 33458899999988773347888999999999999997662 136777777443222  23345555 577799999


Q ss_pred             eEEEEEccCCCccccccccCcCC
Q 018293          329 KLEIWDTLSDAGISNRFSKYSKP  351 (358)
Q Consensus       329 ~i~vw~~~~~~~~~~~~~~~~~~  351 (358)
                      ..+||.+..+..+.+.-..+..+
T Consensus       369 ytRiWsl~~ghLl~tipf~~s~~  391 (425)
T KOG2695|consen  369 YTRIWSLDSGHLLCTIPFPYSAS  391 (425)
T ss_pred             EEEEEecccCceeeccCCCCccc
Confidence            99999999999887765555443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.09  E-value=2.3e-06  Score=80.89  Aligned_cols=295  Identities=16%  Similarity=0.262  Sum_probs=177.0

Q ss_pred             cccCCCcEEEEEEecCCCc-eEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCC---CCeE
Q 018293            2 TINPNDAVIVCARNEDDVS-HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM---EPAI   77 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i   77 (358)
                      +...||.++++..-+...+ .-.+.+|+...    .+....+ .++...-++.|       .|.|+++|+...   ...|
T Consensus       216 SWRGDG~yFAVss~~~~~~~~R~iRVy~ReG----~L~stSE-~v~gLe~~l~W-------rPsG~lIA~~q~~~~~~~V  283 (928)
T PF04762_consen  216 SWRGDGEYFAVSSVEPETGSRRVIRVYSREG----ELQSTSE-PVDGLEGALSW-------RPSGNLIASSQRLPDRHDV  283 (928)
T ss_pred             EECCCCcEEEEEEEEcCCCceeEEEEECCCc----eEEeccc-cCCCccCCccC-------CCCCCEEEEEEEcCCCcEE
Confidence            4678999999997744334 55677887763    3333222 44555556666       789999998764   3456


Q ss_pred             EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc-
Q 018293           78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-  156 (358)
Q Consensus        78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-  156 (358)
                      .+|.-+..+                        .......+......|..+.|+++ +..||....|. |.+|-..+.. 
T Consensus       284 vFfErNGLr------------------------hgeF~l~~~~~~~~v~~l~Wn~d-s~iLAv~~~~~-vqLWt~~NYHW  337 (928)
T PF04762_consen  284 VFFERNGLR------------------------HGEFTLRFDPEEEKVIELAWNSD-SEILAVWLEDR-VQLWTRSNYHW  337 (928)
T ss_pred             EEEecCCcE------------------------eeeEecCCCCCCceeeEEEECCC-CCEEEEEecCC-ceEEEeeCCEE
Confidence            666654211                        11111122345678999999999 67888877655 9999887653 


Q ss_pred             -eeeeecc-cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc----cCCC----------------c-------------
Q 018293          157 -CNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR----ISTH----------------S-------------  201 (358)
Q Consensus       157 -~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~----~~~~----------------~-------------  201 (358)
                       ..+.+.. ....+..+.|+|..+..|...+.+|.+..++..    ....                .             
T Consensus       338 YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPP  417 (928)
T PF04762_consen  338 YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPP  417 (928)
T ss_pred             EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCch
Confidence             2233321 223455699999887888888887877665532    1100                0             


Q ss_pred             --cceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEE----------EeecCCceeEEEec
Q 018293          202 --GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT----------LHAHDKAVCTISYN  269 (358)
Q Consensus       202 --~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~i~~~  269 (358)
                        .........|.+++|++++. .+++-..||.+.+|............ ......          .......+..++|.
T Consensus       418 Ms~~~l~~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (928)
T PF04762_consen  418 MSSYELELPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLKNMWSVKP-PKLLSSISLDSMDISDSELPLGSLRQLAWL  495 (928)
T ss_pred             HhceEEcCCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCCCcccccC-cchhhhcccccccccccccccccEEEEEEe
Confidence              00122456799999999654 58888899999999965542211000 001011          11123457888888


Q ss_pred             CCCCcEEEEEeCC---CcEEEEecCCCC-ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          270 PLVPNLLATGSTD---KMVKLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       270 ~~~~~~l~~~~~d---g~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      .+. .+++....+   ..+.++++...+ .........-.+.+..+...++.. .++.-..+|.+...+....
T Consensus       496 ~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~~G~v~~~~~~~~  566 (928)
T PF04762_consen  496 NDD-TLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSG-SLYIQTNDGKVFQLSSDGE  566 (928)
T ss_pred             CCC-EEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCc-EEEEEECCCEEEEeecCCC
Confidence            766 555554443   568888875433 223333333455666666666654 2555677888886665543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=2.3e-09  Score=90.12  Aligned_cols=232  Identities=16%  Similarity=0.240  Sum_probs=145.9

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      +.+-+++++.|.+|++|.+......                    .........++.|+.+|.++.|-.+ ..++++  .
T Consensus       746 NENSFiSASkDKTVKLWSik~EgD~--------------------~~tsaCQfTY~aHkk~i~~igfL~~-lr~i~S--c  802 (1034)
T KOG4190|consen  746 NENSFISASKDKTVKLWSIKPEGDE--------------------IGTSACQFTYQAHKKPIHDIGFLAD-LRSIAS--C  802 (1034)
T ss_pred             cccceeeccCCceEEEEEeccccCc--------------------cccceeeeEhhhccCcccceeeeec-cceeee--c
Confidence            4567899999999999998642211                    1223345567789999999999988 446654  5


Q ss_pred             CCeEEEEECCCCceeeeec--ccccceeeEEEcCC-CCcEEEEE-eCCCcEEEEEcccCCCccceee-----ecCCeeeE
Q 018293          144 DKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHH-SPQILLSG-SFDRSVVMKDARISTHSGFKWA-----VAADVESL  214 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~~  214 (358)
                      ||.+++||.-.++++..+.  ...+.+..+...++ ...+++.+ +...+++++|.+..+......-     ....+.++
T Consensus       803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i  882 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI  882 (1034)
T ss_pred             cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence            8899999998887765442  11223333333333 22444444 7789999999998765442222     23457889


Q ss_pred             EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEE-EecCCC
Q 018293          215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL-WDLSNN  293 (358)
Q Consensus       215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i-~d~~~~  293 (358)
                      +..+ .++.++++-.+|.|.+.|.+++         +.+.......-....++ .|.+ ..++....|.++.+ |....+
T Consensus       883 aVa~-~GN~lAa~LSnGci~~LDaR~G---------~vINswrpmecdllqla-apsd-q~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  883 AVAD-KGNKLAAALSNGCIAILDARNG---------KVINSWRPMECDLLQLA-APSD-QALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             Eecc-CcchhhHHhcCCcEEEEecCCC---------ceeccCCcccchhhhhc-Cchh-HHHHhhcccceeEeeehhcCC
Confidence            9988 5568999999999999999998         43433333333333333 2333 57777777888888 877665


Q ss_pred             CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          294 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       294 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      ..  .........+..-+  -.-|.. +++......+.+|.-
T Consensus       951 im--h~q~kpppepahfl--qsvgpS-LV~a~~Gn~lgVYad  987 (1034)
T KOG4190|consen  951 IM--HLQDKPPPEPAHFL--QSVGPS-LVTAQNGNILGVYAD  987 (1034)
T ss_pred             ee--eeccCCCCcchhhh--hccCce-eEEeccCcEEEEEec
Confidence            42  22222222221111  123442 666666667777753

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.04  E-value=7.1e-08  Score=84.54  Aligned_cols=291  Identities=12%  Similarity=0.093  Sum_probs=181.6

Q ss_pred             ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCcc---ccCC--CceEEecCCCCeE
Q 018293            3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLK---DREK--GNFMAVGSMEPAI   77 (358)
Q Consensus         3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~--~~~l~~g~~dg~i   77 (358)
                      .+|.| +|+.|+..      -+.+.|...-+......+|.    ..+..++|.|....   +||.  .-+||++...|.|
T Consensus        23 w~~~G-LiAygshs------lV~VVDs~s~q~iqsie~h~----s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   23 WSPSG-LIAYGSHS------LVSVVDSRSLQLIQSIELHQ----SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             cCccc-eEEEecCc------eEEEEehhhhhhhhccccCc----cceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            44444 45555333      55555554433333333442    45568889764333   3433  3367888888999


Q ss_pred             EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCC---CCCcEEEEEEcCCeEEEEECCC
Q 018293           78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK---EFRNILASASADKQVKIWDVAA  154 (358)
Q Consensus        78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~v~iwd~~~  154 (358)
                      .+||+.....                           ...+..|..++..++|-+   +.+..|++-....++.+|+..+
T Consensus        92 il~d~~~~s~---------------------------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt  144 (1062)
T KOG1912|consen   92 ILVDFVLASV---------------------------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT  144 (1062)
T ss_pred             EEEEehhhhh---------------------------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccC
Confidence            9999865332                           224556888899999864   3235777777888999999999


Q ss_pred             CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-------cceeeecC------------------
Q 018293          155 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-------GFKWAVAA------------------  209 (358)
Q Consensus       155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~------------------  209 (358)
                      |+.............|+.+.|-+.+.+...+..|.+.+.+.-.....       .....|..                  
T Consensus       145 G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~  224 (1062)
T KOG1912|consen  145 GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP  224 (1062)
T ss_pred             CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence            99998888777778889999977788888888888877765322111       00011100                  


Q ss_pred             -------CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC-cEEEEEeC
Q 018293          210 -------DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP-NLLATGST  281 (358)
Q Consensus       210 -------~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~  281 (358)
                             ..-.++|+|.-.+.++.. -...+.++|++-.         .++....-..+.+.-+.+.|+.. ..|++...
T Consensus       225 ~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~---------~~l~vvpier~~akfv~vlP~~~rd~LfclH~  294 (1062)
T KOG1912|consen  225 ASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYE---------CCLAVVPIERGGAKFVDVLPDPRRDALFCLHS  294 (1062)
T ss_pred             cchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhh---------ceeEEEEeccCCcceeEeccCCCcceEEEEec
Confidence                   022356788655555554 4567899999876         56666665666666677777653 47889999


Q ss_pred             CCcEEEEecCCCCceeeE---ecC------------CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          282 DKMVKLWDLSNNQPSCIA---SRN------------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       282 dg~i~i~d~~~~~~~~~~---~~~------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      ||.+.+|-.+........   .+.            ...-.+......|..+..++.--.+|.+.+|++.+++.-
T Consensus       295 nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~  369 (1062)
T KOG1912|consen  295 NGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH  369 (1062)
T ss_pred             CCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence            999999986652210000   000            001122233344553334555556788999999976643

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.04  E-value=6.7e-09  Score=81.16  Aligned_cols=210  Identities=14%  Similarity=0.258  Sum_probs=138.3

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc-----eeeeecccc------------cceeeEEEcCC-CCcEEE
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-----CNLTLEHHT------------DKVQAVAWNHH-SPQILL  182 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~-~~~~l~  182 (358)
                      ....|+++.|... +.++++|...|.|.+|.-+...     ....+++|.            ..|..+.|..+ +...++
T Consensus        25 ead~ItaVefd~t-g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          25 EADKITAVEFDET-GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             ccceeeEEEeccc-cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            4567999999998 6799999999999999755332     233445543            45777888654 445778


Q ss_pred             EEeCCCcEEEEEcccCCCcc-------------------------------------------ceeeecCCeeeEEEcCC
Q 018293          183 SGSFDRSVVMKDARISTHSG-------------------------------------------FKWAVAADVESLAWDPH  219 (358)
Q Consensus       183 ~~~~dg~i~i~d~~~~~~~~-------------------------------------------~~~~~~~~i~~~~~~~~  219 (358)
                      ..+.|.+|++|.+.......                                           ....|...+.++.++.+
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD  183 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD  183 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence            88899999999876431000                                           00123345778888875


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecC-----CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-----KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~  294 (358)
                      .+  .+.+..|=.|.+|++......      -.+..+..|.     .-|++..|+|..-+.+.-.+..|.|++-|++...
T Consensus       184 ~e--t~lSaDdLrINLWnl~i~D~s------FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a  255 (460)
T COG5170         184 KE--TLLSADDLRINLWNLEIIDGS------FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA  255 (460)
T ss_pred             hh--eeeeccceeeeeccccccCCc------eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence            43  344457888999998765221      1222333342     4588999999765677777889999999998432


Q ss_pred             c--------------eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          295 P--------------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       295 ~--------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      .              ..+..+..-...|..+.|+++|+| +++- .=-++++||+...+..
T Consensus       256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngry-IlsR-dyltvkiwDvnm~k~p  314 (460)
T COG5170         256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRY-ILSR-DYLTVKIWDVNMAKNP  314 (460)
T ss_pred             hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcE-EEEe-ccceEEEEecccccCC
Confidence            1              001111122346888999999996 4433 3468999999876543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=6.6e-09  Score=85.09  Aligned_cols=249  Identities=14%  Similarity=0.152  Sum_probs=164.2

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      ..+++.+++.||.++.|.-...                        .-...+..+..|...|.+++.+-+ +.+++|.+.
T Consensus        19 ka~fiiqASlDGh~KFWkKs~i------------------------sGvEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d   73 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSRI------------------------SGVEFVKHFRAHLGVILSLAVSYD-GWLFRSVED   73 (558)
T ss_pred             hhheEEeeecchhhhhcCCCCc------------------------cceeehhhhHHHHHHHHhhhcccc-ceeEeeccC
Confidence            4678999999999999975321                        112334455678899999999988 668888777


Q ss_pred             -CCeEEEEECCCCceeeeecccccceeeEEEc--CCCC--cEEEEEeCCCcEEEEEcccCCCc--cceeeecCCeeeEEE
Q 018293          144 -DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN--HHSP--QILLSGSFDRSVVMKDARISTHS--GFKWAVAADVESLAW  216 (358)
Q Consensus       144 -dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~--~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~i~~~~~  216 (358)
                       |..++++|+++-..+..++. ......+.|.  +...  .+.++.-.++.+.++|-....+.  .....|..+|.++.+
T Consensus        74 ~Dhs~KvfDvEn~DminmiKL-~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y  152 (558)
T KOG0882|consen   74 PDHSVKVFDVENFDMINMIKL-VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY  152 (558)
T ss_pred             cccceeEEEeeccchhhhccc-ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe
Confidence             99999999987655433331 1112223332  2211  23334456899999998766533  233457899999999


Q ss_pred             cCCCCCeEEEEecCCeEEEEEcccCCC------CCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEec
Q 018293          217 DPHAEHSFVVSLEDGTIKGFDIRTAKS------DPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  290 (358)
Q Consensus       217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~  290 (358)
                      .|.+ ..+++....|.|.-|.....-.      ........-+..+........++.|+|++ ..+.+-+.|..|++++.
T Consensus       153 ~qa~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~  230 (558)
T KOG0882|consen  153 NQAG-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVF  230 (558)
T ss_pred             eccc-cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEe
Confidence            9954 4788888899999999874110      11111112223333345667899999998 88898889999999999


Q ss_pred             CCCCceeeE------------------------------ecCCC-CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          291 SNNQPSCIA------------------------------SRNPK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       291 ~~~~~~~~~------------------------------~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      .+++.....                              .+..| ...-+.+.|...|.++| -|+-= .|+|.++.++.
T Consensus       231 KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~fll-y~t~~-gikvin~~tn~  308 (558)
T KOG0882|consen  231 KTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLL-YGTIL-GIKVINLDTNT  308 (558)
T ss_pred             ccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEE-eecce-eEEEEEeecCe
Confidence            887632110                              00111 12345678888999744 45544 48999999887


Q ss_pred             ccc
Q 018293          340 GIS  342 (358)
Q Consensus       340 ~~~  342 (358)
                      .++
T Consensus       309 v~r  311 (558)
T KOG0882|consen  309 VVR  311 (558)
T ss_pred             EEE
Confidence            654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=4.3e-09  Score=86.16  Aligned_cols=211  Identities=17%  Similarity=0.113  Sum_probs=152.5

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC--C-ceeeeecccccceeeEEEcCCCCcEEEEEeC-CCcEEEEEcc
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA--G-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDAR  196 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~  196 (358)
                      |.+.|+.+.-...  +++.+++.||.++.|--..  + +.+..+..|...|.+++.+.++ .++.+.+. |..++++|+.
T Consensus         8 hrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    8 HRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             ccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEee
Confidence            8888888866654  5999999999999998543  1 3455667888999999999998 88888777 9999999998


Q ss_pred             cCCCccceeeecCCeeeEEEcCCCC----CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293          197 ISTHSGFKWAVAADVESLAWDPHAE----HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  272 (358)
Q Consensus       197 ~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  272 (358)
                      +-.... ..........+.|....+    .+.+....+|.+.++|-+....       +....-..|..+|..+.++|.+
T Consensus        85 n~Dmin-miKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------q~~~fkklH~sPV~~i~y~qa~  156 (558)
T KOG0882|consen   85 NFDMIN-MIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------QDGYFKKLHFSPVKKIRYNQAG  156 (558)
T ss_pred             ccchhh-hcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-------ccceecccccCceEEEEeeccc
Confidence            766543 112222222333322111    2233345689999999887632       4555667789999999999988


Q ss_pred             CcEEEEEeCCCcEEEEecCC------CCc-------eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          273 PNLLATGSTDKMVKLWDLSN------NQP-------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       273 ~~~l~~~~~dg~i~i~d~~~------~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                       ..+++....|.|.-|....      .+.       .-+..+........++.|+|++.. +.+-+.|..|+++++.+|+
T Consensus       157 -Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  157 -DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             -cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc-ccccCcccEEEEEEeccch
Confidence             7888888889999998873      100       011222233456789999999995 8888899999999999998


Q ss_pred             ccccc
Q 018293          340 GISNR  344 (358)
Q Consensus       340 ~~~~~  344 (358)
                      .++..
T Consensus       235 lvqei  239 (558)
T KOG0882|consen  235 LVQEI  239 (558)
T ss_pred             hhhhh
Confidence            76643

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=2.8e-08  Score=87.25  Aligned_cols=189  Identities=17%  Similarity=0.169  Sum_probs=133.8

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  200 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  200 (358)
                      ....++|++++   ..+|+-|+.+|.|++++.. +.+ .+...|...      ..+| .++++|+.||++.+-.+-+.+.
T Consensus        38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hhhHHHHHHhh---cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCC-ceEEEecCCCcEEEeeccCCcc
Confidence            34678888887   4589999999999999965 333 333334433      4566 8999999999999998887766


Q ss_pred             ccceeeecCCeeeEEEcCC----CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEE
Q 018293          201 SGFKWAVAADVESLAWDPH----AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  276 (358)
Q Consensus       201 ~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l  276 (358)
                      .. ......++.+++++|+    ....+++|+..| +.++.-+-...       +....+....++|.++.|.  | +++
T Consensus       106 ~~-~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-------k~~v~l~~~eG~I~~i~W~--g-~lI  173 (846)
T KOG2066|consen  106 IT-QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-------KDSVVLSEGEGPIHSIKWR--G-NLI  173 (846)
T ss_pred             ce-eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------ccceeeecCccceEEEEec--C-cEE
Confidence            55 5667789999999996    356799999988 77776554321       2222456668899999999  3 788


Q ss_pred             EEEeCCCcEEEEecCCCCceeeEecCC----CCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          277 ATGSTDKMVKLWDLSNNQPSCIASRNP----KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       277 ~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      |-++.+| |+|||..+.+.........    .......+.|.++.+  |+.| ..-+|+|..++.
T Consensus       174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIG-W~d~v~i~~I~~  234 (846)
T KOG2066|consen  174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIG-WGDSVKICSIKK  234 (846)
T ss_pred             EEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe--EEEe-cCCeEEEEEEec
Confidence            8888766 9999999887432222211    111234678888876  4444 445799998883

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.98  E-value=1.9e-07  Score=77.97  Aligned_cols=234  Identities=10%  Similarity=0.145  Sum_probs=150.3

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      .+.+||.|.+|++.... -|.+|.-.....+...                            .| ..|..+.|+|. +++
T Consensus        37 ~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~----------------------------~~-~~V~~~~fSP~-~kY   85 (561)
T COG5354          37 YVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF----------------------------RH-PDVKYLDFSPN-EKY   85 (561)
T ss_pred             heeecCcchheehhhcc-ceEEccccchhheeee----------------------------ec-CCceecccCcc-cce
Confidence            34459999999988765 4779987654422211                            13 45899999999 778


Q ss_pred             EEEEEcCC---------------eEEEEECCCCceeeeecccccc--ee-eEEEcCCCCcEEEEEeCCCcEEEEEcccCC
Q 018293          138 LASASADK---------------QVKIWDVAAGKCNLTLEHHTDK--VQ-AVAWNHHSPQILLSGSFDRSVVMKDARIST  199 (358)
Q Consensus       138 l~s~~~dg---------------~v~iwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  199 (358)
                      |.+-+..+               .+.+||+.++..+..+..-..+  .. -+.|+-++ .+++-. ....+.++++ +..
T Consensus        86 L~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n  162 (561)
T COG5354          86 LVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDN  162 (561)
T ss_pred             eeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCc
Confidence            88865543               4999999999999888765555  44 67888877 554444 4567999997 332


Q ss_pred             Ccc-ceee-ecCCeeeEEEcCCCC-CeEEE-----EecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC
Q 018293          200 HSG-FKWA-VAADVESLAWDPHAE-HSFVV-----SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  271 (358)
Q Consensus       200 ~~~-~~~~-~~~~i~~~~~~~~~~-~~~~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  271 (358)
                      ... .... ....+....|+|.++ ..++.     ...++.+++|.+...         ..+..-.-....-..+.|.+.
T Consensus       163 ~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~---------s~l~tk~lfk~~~~qLkW~~~  233 (561)
T COG5354         163 IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN---------SVLVTKNLFKVSGVQLKWQVL  233 (561)
T ss_pred             cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC---------CeeeeeeeEeecccEEEEecC
Confidence            221 1111 236688889999522 22333     356788999998855         333332222233356888888


Q ss_pred             CCcEEEEEe-----------CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCe-EEEEEccCCeEEEEEccCC
Q 018293          272 VPNLLATGS-----------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       272 ~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~  338 (358)
                      | .+|+.-.           ....+++++++.... .+ .. .-.++|...+|.|.++. .+++|-.+-.+.++|+...
T Consensus       234 g-~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V-~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         234 G-KYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PV-EK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             C-ceEEEEEEEeeecccceeccceEEEEeeccccc-ce-ec-cccccceeeeecccCCceeEEecccccceeecccccc
Confidence            7 4443311           124588888875441 22 21 45789999999998764 3344457778889998765

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=4.6e-08  Score=79.13  Aligned_cols=223  Identities=16%  Similarity=0.181  Sum_probs=136.6

Q ss_pred             cccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEc
Q 018293          116 YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA  195 (358)
Q Consensus       116 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  195 (358)
                      ..+.+|...|..++|+|...-++..++.+..|+|.|+++...+..+..+ ..+++++|.-+..+++.+|...|.|.+||+
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~  265 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM  265 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence            3566788999999999995558999999999999999999988888877 789999999998899999999999999999


Q ss_pred             ccCCCccceee---ecCCeeeEEEcCC-----CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEE
Q 018293          196 RISTHSGFKWA---VAADVESLAWDPH-----AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS  267 (358)
Q Consensus       196 ~~~~~~~~~~~---~~~~i~~~~~~~~-----~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  267 (358)
                      +..+.......   ...+|..++.-+-     .+.+++....  .+..|++.......     .++..+ ...+.+.++.
T Consensus       266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~-----p~vlel-e~pG~cismq  337 (463)
T KOG1645|consen  266 RQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECL-----PCVLEL-EPPGICISMQ  337 (463)
T ss_pred             cCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCC-----Cccccc-CCCcceeeee
Confidence            97764332211   2234444332221     1223333322  25566665442211     222222 2244556666


Q ss_pred             ecCCCCcEEEEEeCCCc------EEE-EecCCCCceeeEecCC---CCce---eEEEEEcCCCCeEEEEEccCCeEEEEE
Q 018293          268 YNPLVPNLLATGSTDKM------VKL-WDLSNNQPSCIASRNP---KAGA---VFSVAFSEDSPFVLAIGGSKGKLEIWD  334 (358)
Q Consensus       268 ~~~~~~~~l~~~~~dg~------i~i-~d~~~~~~~~~~~~~~---~~~~---v~~~~~~~~~~~~l~~~~~dg~i~vw~  334 (358)
                      ..+.....|++.-.+.+      +-. -|..++.+++......   ...+   -..+.-.++..+++..++..+.+.+||
T Consensus       338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D  417 (463)
T KOG1645|consen  338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD  417 (463)
T ss_pred             ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence            66655455555433211      111 1222333222211110   0000   112233456677777788888999999


Q ss_pred             ccCCCcccccccc
Q 018293          335 TLSDAGISNRFSK  347 (358)
Q Consensus       335 ~~~~~~~~~~~~~  347 (358)
                      ..+.+.+.++...
T Consensus       418 ~~s~evvQ~l~~~  430 (463)
T KOG1645|consen  418 PHSFEVVQTLALS  430 (463)
T ss_pred             cchhheeeecccC
Confidence            9999888765544

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.96  E-value=3.9e-08  Score=87.57  Aligned_cols=183  Identities=16%  Similarity=0.230  Sum_probs=138.8

Q ss_pred             CcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeE
Q 018293          135 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  214 (358)
Q Consensus       135 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  214 (358)
                      +..++.|+....+..+|+.+.+..+...-....|.-|+.+  + +++.+|...|+|.+-|.++.+.+.....|.+.+..+
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEec--C-cEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            4467788888889999999888776665444456666543  3 789999999999999999999988888899999888


Q ss_pred             EEcCCCCCeEEEEec---------CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcE
Q 018293          215 AWDPHAEHSFVVSLE---------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  285 (358)
Q Consensus       215 ~~~~~~~~~~~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i  285 (358)
                      ...   ++++++++.         |..|+|||+|..         +.+..+..+.++ .-+.|+|.-...+++++..|..
T Consensus       224 Dv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmm---------ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~  290 (1118)
T KOG1275|consen  224 DVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMM---------RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQF  290 (1118)
T ss_pred             ecc---CCeEEEeecccccccccccchhhhhhhhhh---------hccCCcccccCc-hhhhhcccccceEEEEecccce
Confidence            774   346776653         566899999987         333333334343 5678888776788899999999


Q ss_pred             EEEec---CCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          286 KLWDL---SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       286 ~i~d~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      .+-|.   .+.. ..+.........+..+.++++++ .+|.|..+|.|.+|.-
T Consensus       291 q~vd~~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  291 QFVDTATLSNPP-AGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             eeccccccCCCc-cceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecC
Confidence            99993   3321 23444455556699999999999 5999999999999983

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.95  E-value=2e-06  Score=69.34  Aligned_cols=198  Identities=12%  Similarity=0.141  Sum_probs=125.4

Q ss_pred             EEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEc-CCCCcEEEEEeCCCcEEEEEcccCCCcccee
Q 018293          127 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN-HHSPQILLSGSFDRSVVMKDARISTHSGFKW  205 (358)
Q Consensus       127 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  205 (358)
                      ++.|.+..+.++++-...+.|..|+..+++... +... . ...+.+. +++ . ++.+..++ +.++|..+++......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g-~-l~v~~~~~-~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDG-R-LYVADSGG-IAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTTS-E-EEEEETTC-EEEEETTTTEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccCC-E-EEEEEcCc-eEEEecCCCcEEEEee
Confidence            567888547777777788999999998875433 3222 2 6677777 554 4 55555544 4555888765443222


Q ss_pred             e-----ecCCeeeEEEcCCCCCeEEEEecC--------CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293          206 A-----VAADVESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  272 (358)
Q Consensus       206 ~-----~~~~i~~~~~~~~~~~~~~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  272 (358)
                      .     .....+.+++.|++. +.++....        |.|..++.. +         + .......-...+.|+|+|++
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~---------~-~~~~~~~~~~pNGi~~s~dg  145 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G---------K-VTVVADGLGFPNGIAFSPDG  145 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S---------E-EEEEEEEESSEEEEEEETTS
T ss_pred             ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C---------e-EEEEecCcccccceEECCcc
Confidence            2     234578899999654 55554432        456666666 3         2 22222334556899999998


Q ss_pred             CcEEEEEeCCCcEEEEecCCCCc-----eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          273 PNLLATGSTDKMVKLWDLSNNQP-----SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       273 ~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      ..++++-+..+.|..|++.....     .....+....+..-.+++..+|+ ++++....+.|.+++.. |+.+...
T Consensus       146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~~~~~i  220 (246)
T PF08450_consen  146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-GKLLREI  220 (246)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred             hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-ccEEEEE
Confidence            44556777788899999864332     12223333334578899999998 67777778899999987 7765543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.95  E-value=4e-08  Score=87.53  Aligned_cols=187  Identities=15%  Similarity=0.205  Sum_probs=137.6

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      ++..++.|+....+..+|+.+....+...+                           ....|+-+..+   ++.+++|..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v---------------------------~a~~v~imR~N---nr~lf~G~t  195 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV---------------------------SASGVTIMRYN---NRNLFCGDT  195 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeec---------------------------cCCceEEEEec---CcEEEeecc
Confidence            456677777777788888876544332111                           22236666554   558999999


Q ss_pred             CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeC---------CCcEEEEEcccCCCccceeeecCCeeeE
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---------DRSVVMKDARISTHSGFKWAVAADVESL  214 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~i~~~  214 (358)
                      .|+|.+-|.++.+.++++..|.+.|..+..  .| +.|++++.         |..|++||+|..+.+... .......-+
T Consensus       196 ~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI-~~~~~P~fl  271 (1118)
T KOG1275|consen  196 RGTVFLRDPNSFETIHTFDAHSGSISDFDV--QG-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI-QFPYGPQFL  271 (1118)
T ss_pred             cceEEeecCCcCceeeeeeccccceeeeec--cC-CeEEEeecccccccccccchhhhhhhhhhhccCCc-ccccCchhh
Confidence            999999999999999999999999987665  45 67888875         456899999987765522 233334678


Q ss_pred             EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEec
Q 018293          215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  290 (358)
Q Consensus       215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~  290 (358)
                      .|+|.-...+++.+..|...+-|..+....     ......+......+..+++++++ ..++.|..+|.|.+|.-
T Consensus       272 rf~Psl~t~~~V~S~sGq~q~vd~~~lsNP-----~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  272 RFHPSLTTRLAVTSQSGQFQFVDTATLSNP-----PAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             hhcccccceEEEEecccceeeccccccCCC-----ccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeecC
Confidence            889977778999999999999995443211     12334444556669999999998 89999999999999983

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.89  E-value=3.7e-06  Score=67.50  Aligned_cols=182  Identities=18%  Similarity=0.139  Sum_probs=113.2

Q ss_pred             cEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce-eeec---C--
Q 018293          136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAVA---A--  209 (358)
Q Consensus       136 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---~--  209 (358)
                      ..+++++.++.+..||..+|+.+.++.. ...+...... .+ ..+++++.++.+..+|..+++..... ....   .  
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~  113 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-DG-GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR  113 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-ET-TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee-cc-cccccccceeeeEecccCCcceeeeeccccccccccc
Confidence            4677778999999999999998887764 3322222222 22 45677778889999999888875532 2111   1  


Q ss_pred             CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCc----------e-eEEEecCCCCcEEEE
Q 018293          210 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA----------V-CTISYNPLVPNLLAT  278 (358)
Q Consensus       210 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~----------i-~~i~~~~~~~~~l~~  278 (358)
                      ......+.   +..++++..++.|..+|++++         +.+.........          + ..+.+. ++  .++.
T Consensus       114 ~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG---------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~  178 (238)
T PF13360_consen  114 SSSSPAVD---GDRLYVGTSSGKLVALDPKTG---------KLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG--RVYV  178 (238)
T ss_dssp             --SEEEEE---TTEEEEEETCSEEEEEETTTT---------EEEEEEESSTT-SS--EEEETTEEEEEECC-TT--EEEE
T ss_pred             cccCceEe---cCEEEEEeccCcEEEEecCCC---------cEEEEeecCCCCCCcceeeecccccceEEE-CC--EEEE
Confidence            11222332   347888888999999999988         555555443321          1 223333 23  6666


Q ss_pred             EeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          279 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       279 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      ++.++.+..+|+.+++..  .... . ..+... ...++.. ++.++.++.|..||+++++.+
T Consensus       179 ~~~~g~~~~~d~~tg~~~--w~~~-~-~~~~~~-~~~~~~~-l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  179 SSGDGRVVAVDLATGEKL--WSKP-I-SGIYSL-PSVDGGT-LYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             ECCTSSEEEEETTTTEEE--EEEC-S-S-ECEC-EECCCTE-EEEEETTTEEEEEETTTTEEE
T ss_pred             EcCCCeEEEEECCCCCEE--EEec-C-CCccCC-ceeeCCE-EEEEeCCCEEEEEECCCCCEE
Confidence            777775443499999832  3333 1 222221 3456664 555668999999999999865

...

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.88  E-value=1.4e-09  Score=96.27  Aligned_cols=204  Identities=18%  Similarity=0.176  Sum_probs=142.6

Q ss_pred             eeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC-c
Q 018293          111 KSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-S  189 (358)
Q Consensus       111 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~  189 (358)
                      +.+....+..|+..-+|++|+-. .+.|+.|+..|.|+++++.+|........|..+|+.+.-+.+|...|.+++... -
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             hcccchhhhccccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence            45566677789999999999988 779999999999999999999999999999999999999999955555554444 5


Q ss_pred             EEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEE-Ee---ecCCceeE
Q 018293          190 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-LH---AHDKAVCT  265 (358)
Q Consensus       190 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~---~~~~~i~~  265 (358)
                      ..+|++...-.....   -..-.++.|+.. ...-+.|+......+||+.+..         +..+ +.   +....-++
T Consensus      1169 saLW~~~s~~~~~Hs---f~ed~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~---------~l~tylt~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHS---FDEDKAVKFSNS-LQFRALGTEADDALLYDVQTCS---------PLQTYLTDTVTSSYSNNL 1235 (1516)
T ss_pred             HHHhccccccCcccc---ccccceeehhhh-HHHHHhcccccceEEEecccCc---------HHHHhcCcchhhhhhccc
Confidence            678998753222211   134567788774 3345566666789999999873         2222 11   12223377


Q ss_pred             EEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          266 ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       266 i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      ..|+|+. .+++   .||  .+||++..+  .+..+..... -..-.|+|.|..+++ -+     .|||+++-+.++.
T Consensus      1236 a~FsP~D-~LIl---ndG--vLWDvR~~~--aIh~FD~ft~-~~~G~FHP~g~eVII-NS-----EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1236 AHFSPCD-TLIL---NDG--VLWDVRIPE--AIHRFDQFTD-YGGGGFHPSGNEVII-NS-----EIWDMRTFKLLHS 1298 (1516)
T ss_pred             cccCCCc-ceEe---eCc--eeeeeccHH--HHhhhhhhee-cccccccCCCceEEe-ec-----hhhhhHHHHHHhc
Confidence            8999987 6665   455  379999875  3444443321 123469999986444 33     4799988776653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=6e-07  Score=79.22  Aligned_cols=182  Identities=16%  Similarity=0.187  Sum_probs=120.9

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      .+++|+-|+.+|.|++++.+..-                             .....|...      ..+ +.++++|+.
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~~~-----------------------------~~~~~~s~~------~~~-Gey~asCS~   91 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQGNP-----------------------------KTNFDHSSS------ILE-GEYVASCSD   91 (846)
T ss_pred             hcceeeeccccceEEEEecCCcc-----------------------------ccccccccc------ccC-CceEEEecC
Confidence            57899999999999999986311                             011123332      334 679999999


Q ss_pred             CCeEEEEECCCCceeeeecccccceeeEEEcCC----CCcEEEEEeCCCcEEEEEcccCC--CccceeeecCCeeeEEEc
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH----SPQILLSGSFDRSVVMKDARIST--HSGFKWAVAADVESLAWD  217 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~  217 (358)
                      ||+|.|-.+-+.+...++. ...++.+++++|+    ..+.+++|+..| +.++.-+--.  .........++|.++.|.
T Consensus        92 DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~  169 (846)
T KOG2066|consen   92 DGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR  169 (846)
T ss_pred             CCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec
Confidence            9999999998888777666 4578999999998    236789999888 7777643211  112244567899999996


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  293 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~  293 (358)
                      .   ++++-++.+| |++||....+.....+...  .... ....-..+.|.++.  .|+.| ...+|+|..++.+
T Consensus       170 g---~lIAWand~G-v~vyd~~~~~~l~~i~~p~--~~~R-~e~fpphl~W~~~~--~LVIG-W~d~v~i~~I~~~  235 (846)
T KOG2066|consen  170 G---NLIAWANDDG-VKVYDTPTRQRLTNIPPPS--QSVR-PELFPPHLHWQDED--RLVIG-WGDSVKICSIKKR  235 (846)
T ss_pred             C---cEEEEecCCC-cEEEeccccceeeccCCCC--CCCC-cccCCCceEecCCC--eEEEe-cCCeEEEEEEecc
Confidence            4   4777777666 8999998874322111111  0000 11123457788754  45544 5557888888743

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.83  E-value=3.6e-09  Score=90.44  Aligned_cols=194  Identities=25%  Similarity=0.335  Sum_probs=130.5

Q ss_pred             CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293           63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  142 (358)
Q Consensus        63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  142 (358)
                      .+..++++|..+|.|.+-.+......                         -.....+|....++++|++-+.+.||+|-
T Consensus        68 ~d~cIlavG~atG~I~l~s~r~~hdS-------------------------s~E~tp~~ar~Ct~lAwneLDtn~LAagl  122 (783)
T KOG1008|consen   68 NDRCILAVGSATGNISLLSVRHPHDS-------------------------SAEVTPGYARPCTSLAWNELDTNHLAAGL  122 (783)
T ss_pred             CchhhhhhccccCceEEeecCCcccc-------------------------cceecccccccccccccccccHHHHHhhh
Confidence            44578999999999998877532111                         01123368889999999997677888773


Q ss_pred             ----cCCeEEEEECCCC--cee--eeecc-cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeee
Q 018293          143 ----ADKQVKIWDVAAG--KCN--LTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVES  213 (358)
Q Consensus       143 ----~dg~v~iwd~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  213 (358)
                          .|..+.|||+.++  .+.  ..+.+ ......+++|..+. +++++|.....+.++|++...... ..-....+..
T Consensus       123 dkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~-~svnTk~vqG  200 (783)
T KOG1008|consen  123 DKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSV-SSVNTKYVQG  200 (783)
T ss_pred             hhhcccCCccceecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhh-hhhhhhhccc
Confidence                3567999999876  221  12222 33455688999777 888999999999999998432221 1122345667


Q ss_pred             EEEcCCCCCeEEEEecCCeEEEEE-cccCCCCCCCCCCCccEEEee----cCCceeEEEecCCCCcEEEEEeCC-CcEEE
Q 018293          214 LAWDPHAEHSFVVSLEDGTIKGFD-IRTAKSDPDSTSQQSSFTLHA----HDKAVCTISYNPLVPNLLATGSTD-KMVKL  287 (358)
Q Consensus       214 ~~~~~~~~~~~~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~~~~~~~l~~~~~d-g~i~i  287 (358)
                      +...|...+++++.. ||.|.+|| .++-+        .++..+..    ....+..++|.|....++++...| ++|+.
T Consensus       201 ~tVdp~~~nY~cs~~-dg~iAiwD~~rnie--------npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrl  271 (783)
T KOG1008|consen  201 ITVDPFSPNYFCSNS-DGDIAIWDTYRNIE--------NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRL  271 (783)
T ss_pred             ceecCCCCCceeccc-cCceeeccchhhhc--------cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEE
Confidence            778886666776665 99999999 44331        22222221    223589999999776677777764 67999


Q ss_pred             EecCC
Q 018293          288 WDLSN  292 (358)
Q Consensus       288 ~d~~~  292 (358)
                      +|+..
T Consensus       272 ydi~~  276 (783)
T KOG1008|consen  272 YDICV  276 (783)
T ss_pred             ecccc
Confidence            99864

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.83  E-value=1.4e-08  Score=55.72  Aligned_cols=39  Identities=33%  Similarity=0.646  Sum_probs=36.4

Q ss_pred             CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEE
Q 018293          155 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  194 (358)
Q Consensus       155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  194 (358)
                      ++++.++.+|...|++++|+|++ .++++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            36788999999999999999998 8999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=6e-08  Score=78.53  Aligned_cols=167  Identities=17%  Similarity=0.200  Sum_probs=112.4

Q ss_pred             EEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEE
Q 018293          147 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV  226 (358)
Q Consensus       147 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  226 (358)
                      |++.+..+.+....+..+...|..++|+|....++..++.+..|++.|+++........ ....+++++|+-++.+.+++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-a~~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-AYNQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-ccCCceeeeeccCCcceeEE
Confidence            55666556666666677888999999999985689999999999999999987776443 34899999999999999999


Q ss_pred             EecCCeEEEEEcccCCCCCCCCCCCccEEEee--cCCceeEEEe------cCCCCcEEEEEeCCCcEEEEecCC--CCce
Q 018293          227 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISY------NPLVPNLLATGSTDKMVKLWDLSN--NQPS  296 (358)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~------~~~~~~~l~~~~~dg~i~i~d~~~--~~~~  296 (358)
                      |..+|.|.+||++..+.        .+..+.+  ...+|..++.      .+.+ .+++..+.+  +..|++..  +.+.
T Consensus       254 Gl~nG~VlvyD~R~~~~--------~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~s~~~~p  322 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEG--------PLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVFSAECLP  322 (463)
T ss_pred             eccCceEEEEEccCCCc--------hHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhccccCCC
Confidence            99999999999998743        2222211  1233333332      3333 455544443  45566543  2222


Q ss_pred             eeEecCCCCceeEEEEEcCCCCeEEEEEcc
Q 018293          297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGS  326 (358)
Q Consensus       297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  326 (358)
                      ++.+.. ..+...+++..+..+++|++.-.
T Consensus       323 ~vlele-~pG~cismqy~~~snh~l~tyRs  351 (463)
T KOG1645|consen  323 CVLELE-PPGICISMQYHGVSNHLLLTYRS  351 (463)
T ss_pred             cccccC-CCcceeeeeecCccceEEEEecC
Confidence            333332 34566677777766666666544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.80  E-value=9e-06  Score=65.35  Aligned_cols=228  Identities=12%  Similarity=0.066  Sum_probs=134.3

Q ss_pred             CcccC-CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC-----CC
Q 018293            1 MTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS-----ME   74 (358)
Q Consensus         1 l~~~p-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-----~d   74 (358)
                      ++++| ....++.++.-+.    ...+++...+..+.......    .     ..+.-...||+||++|++.=     ..
T Consensus        10 ~a~~p~~~~avafaRRPG~----~~~v~D~~~g~~~~~~~a~~----g-----RHFyGHg~fs~dG~~LytTEnd~~~g~   76 (305)
T PF07433_consen   10 VAAHPTRPEAVAFARRPGT----FALVFDCRTGQLLQRLWAPP----G-----RHFYGHGVFSPDGRLLYTTENDYETGR   76 (305)
T ss_pred             eeeCCCCCeEEEEEeCCCc----EEEEEEcCCCceeeEEcCCC----C-----CEEecCEEEcCCCCEEEEeccccCCCc
Confidence            35788 5666777766663    56677776653332221100    0     00111345799999998853     35


Q ss_pred             CeEEEEEcc-cccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE------------
Q 018293           75 PAIEIWDLD-VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA------------  141 (358)
Q Consensus        75 g~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~------------  141 (358)
                      |.|-|||.. +.+.                           +..+..|.-.-..+.+.|++. .|+.+            
T Consensus        77 G~IgVyd~~~~~~r---------------------------i~E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR  128 (305)
T PF07433_consen   77 GVIGVYDAARGYRR---------------------------IGEFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGR  128 (305)
T ss_pred             EEEEEEECcCCcEE---------------------------EeEecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCc
Confidence            899999997 2222                           222333444455667788843 33333            


Q ss_pred             ------EcCCeEEEEECCCCceeee--e--cccccceeeEEEcCCCCcEEEEEeCCCc-------EEEEEcccCCCcc--
Q 018293          142 ------SADKQVKIWDVAAGKCNLT--L--EHHTDKVQAVAWNHHSPQILLSGSFDRS-------VVMKDARISTHSG--  202 (358)
Q Consensus       142 ------~~dg~v~iwd~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~--  202 (358)
                            ..+.++...|..+|+.+.+  +  ..|...|..+++.++| ..++..-..|.       +-+++..  +...  
T Consensus       129 ~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~  205 (305)
T PF07433_consen  129 AKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRG--GALRLL  205 (305)
T ss_pred             eecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCC--Ccceec
Confidence                  2334577777788887766  4  3377789999999998 55444433332       2333322  2111  


Q ss_pred             -----ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEE
Q 018293          203 -----FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA  277 (358)
Q Consensus       203 -----~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~  277 (358)
                           ........+-+|++++++....+++-..|.+.+||..++         ..+....  -..+..++..+++  +++
T Consensus       206 ~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg---------~~~~~~~--l~D~cGva~~~~~--f~~  272 (305)
T PF07433_consen  206 PAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG---------RLLGSVP--LPDACGVAPTDDG--FLV  272 (305)
T ss_pred             cCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC---------CEeeccc--cCceeeeeecCCc--eEE
Confidence                 112345779999999977656677778889999999987         3333332  2345667766654  555


Q ss_pred             EEeCCCcEE
Q 018293          278 TGSTDKMVK  286 (358)
Q Consensus       278 ~~~~dg~i~  286 (358)
                      +.+ .|.+.
T Consensus       273 ssG-~G~~~  280 (305)
T PF07433_consen  273 SSG-QGQLI  280 (305)
T ss_pred             eCC-CccEE
Confidence            544 45443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.80  E-value=1e-05  Score=70.14  Aligned_cols=223  Identities=8%  Similarity=0.027  Sum_probs=124.6

Q ss_pred             CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293           65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  144 (358)
Q Consensus        65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  144 (358)
                      +..++++..+|.|.-+|..+++.........                  ......+...++.    . + + .++.++.+
T Consensus       160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~------------------~~~~~~~~~sP~v----~-~-~-~v~~~~~~  214 (394)
T PRK11138        160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDV------------------PSLTLRGESAPAT----A-F-G-GAIVGGDN  214 (394)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeecCCC------------------CcccccCCCCCEE----E-C-C-EEEEEcCC
Confidence            4466677788999999998877654321100                  0000011111211    1 1 2 46667788


Q ss_pred             CeEEEEECCCCceeeeeccccc-------ceeeEEEcC--CCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEE
Q 018293          145 KQVKIWDVAAGKCNLTLEHHTD-------KVQAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA  215 (358)
Q Consensus       145 g~v~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  215 (358)
                      |.+..+|.++|+.+........       ....+.-+|  .+ ..++.++.+|.+..+|..+++..-.. ... ....+.
T Consensus       215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~tG~~~W~~-~~~-~~~~~~  291 (394)
T PRK11138        215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRSGQIVWKR-EYG-SVNDFA  291 (394)
T ss_pred             CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCCCCEEEee-cCC-CccCcE
Confidence            9999999999987665431110       000111122  23 45677778999999999887654311 111 111222


Q ss_pred             EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293          216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~  294 (358)
                      .   .+..++.++.+|.+..+|..+++         .+.....- .....+....  + ..|+.++.+|.+.++|..+++
T Consensus       292 ~---~~~~vy~~~~~g~l~ald~~tG~---------~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG~  356 (394)
T PRK11138        292 V---DGGRIYLVDQNDRVYALDTRGGV---------ELWSQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHWINREDGR  356 (394)
T ss_pred             E---ECCEEEEEcCCCeEEEEECCCCc---------EEEcccccCCCcccCCEEE--C-CEEEEEeCCCEEEEEECCCCC
Confidence            2   23467778889999999998873         22221110 1112222222  3 578888999999999999998


Q ss_pred             ceeeEecCCCCceeEE-EEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          295 PSCIASRNPKAGAVFS-VAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       295 ~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      ..-....  ....+.+ ..+ .+++  |+.++.||.|+.++.
T Consensus       357 ~~~~~~~--~~~~~~s~P~~-~~~~--l~v~t~~G~l~~~~~  393 (394)
T PRK11138        357 FVAQQKV--DSSGFLSEPVV-ADDK--LLIQARDGTVYAITR  393 (394)
T ss_pred             EEEEEEc--CCCcceeCCEE-ECCE--EEEEeCCceEEEEeC
Confidence            4333322  2222222 222 2443  566889999988764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.80  E-value=1.2e-08  Score=55.92  Aligned_cols=37  Identities=32%  Similarity=0.652  Sum_probs=33.3

Q ss_pred             cccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEE
Q 018293          114 IKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  151 (358)
Q Consensus       114 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd  151 (358)
                      +...+.+|.+.|++++|+|+ +.+|++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence            34466789999999999999 78999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.80  E-value=4.7e-06  Score=65.91  Aligned_cols=204  Identities=15%  Similarity=0.176  Sum_probs=118.1

Q ss_pred             cCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeeccc-ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 018293          118 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  196 (358)
Q Consensus       118 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  196 (358)
                      +.+-...++.|+|+|+.+.++++....+.|..++. +|+.++.+.-. .+....+++..++ .++++.-.++.+.++++.
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEEE-
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEEEe
Confidence            33555679999999986778888888899988886 57777777533 2457788888777 666666668999999984


Q ss_pred             cCCCcc-c------e----eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEE--------Ee
Q 018293          197 ISTHSG-F------K----WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT--------LH  257 (358)
Q Consensus       197 ~~~~~~-~------~----~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--------~~  257 (358)
                      ...... .      .    ......+..++|+|.++ .++++-+..-..+|.++....      ......        ..
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~------~~~~~~~~~~~~~~~~  167 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPG------GFDLFVSDDQDLDDDK  167 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-------SS--EEEE-HHHH-HT
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccC------ccceeecccccccccc
Confidence            432211 0      0    11335689999999655 555666666677787765210      011111        11


Q ss_pred             ecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCC-------CceeEEEEEcCCCCeEEEEEccCCeE
Q 018293          258 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-------AGAVFSVAFSEDSPFVLAIGGSKGKL  330 (358)
Q Consensus       258 ~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~dg~i  330 (358)
                      .....+.++.++|..+++++....+..|..+| ..+++.....+..-       -..--.|+|.++|. ++++ ++-+.+
T Consensus       168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIv-sEpNlf  244 (248)
T PF06977_consen  168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIV-SEPNLF  244 (248)
T ss_dssp             --SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEE-ETTTEE
T ss_pred             ceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEE-cCCceE
Confidence            23345789999998768888888888999999 56665455555431       12466899999997 5554 455566


Q ss_pred             EEE
Q 018293          331 EIW  333 (358)
Q Consensus       331 ~vw  333 (358)
                      ++|
T Consensus       245 y~f  247 (248)
T PF06977_consen  245 YRF  247 (248)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=1.3e-06  Score=77.66  Aligned_cols=204  Identities=11%  Similarity=0.169  Sum_probs=133.9

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      ++.+..+|.|+.+|.|.+.+-.                            ....+.++.+...|-..-+.-++.++|++.
T Consensus        32 ~s~~~~vvigt~~G~V~~Ln~s----------------------------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv   83 (933)
T KOG2114|consen   32 SSSTGSVVIGTADGRVVILNSS----------------------------FQLIRGFQAYEQSIVQFLYILNKQNFLFSV   83 (933)
T ss_pred             cCCCceEEEeeccccEEEeccc----------------------------ceeeehheecchhhhhHhhcccCceEEEEE
Confidence            7889999999999999888753                            222234455666633333444436788888


Q ss_pred             EcCC-----eEEEEECCCC------ceee--eec-----ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc--cCC--
Q 018293          142 SADK-----QVKIWDVAAG------KCNL--TLE-----HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR--IST--  199 (358)
Q Consensus       142 ~~dg-----~v~iwd~~~~------~~~~--~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~--  199 (358)
                      +.|+     .+++|+++.-      .++.  .+.     ....++.+++.+.+- ..+++|-.+|.|..+.-.  ..+  
T Consensus        84 ~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgs  162 (933)
T KOG2114|consen   84 GEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGS  162 (933)
T ss_pred             eecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhcccc
Confidence            7775     4999998643      2221  111     135678889999886 889999999999998532  222  


Q ss_pred             CccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE
Q 018293          200 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  279 (358)
Q Consensus       200 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~  279 (358)
                      ..........+|+.+++..++...+++.+ ...|.+|.+...        ......+..|....+|..+++.. .-++++
T Consensus       163 r~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr--------~p~~~~ld~~G~~lnCss~~~~t-~qfIca  232 (933)
T KOG2114|consen  163 RQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGR--------TPSLKVLDNNGISLNCSSFSDGT-YQFICA  232 (933)
T ss_pred             ceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCC--------CcceeeeccCCccceeeecCCCC-ccEEEe
Confidence            22223345678999999886665334433 457899999844        12344577788899999999865 324444


Q ss_pred             eCCCcEEEEecCCCCceeeEecC-CCCce
Q 018293          280 STDKMVKLWDLSNNQPSCIASRN-PKAGA  307 (358)
Q Consensus       280 ~~dg~i~i~d~~~~~~~~~~~~~-~~~~~  307 (358)
                      + +..+.+||....++  ...+. +|...
T Consensus       233 ~-~e~l~fY~sd~~~~--cfaf~~g~kk~  258 (933)
T KOG2114|consen  233 G-SEFLYFYDSDGRGP--CFAFEVGEKKE  258 (933)
T ss_pred             c-CceEEEEcCCCcce--eeeecCCCeEE
Confidence            3 34699999886663  34444 55443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.78  E-value=1e-05  Score=65.08  Aligned_cols=206  Identities=14%  Similarity=0.089  Sum_probs=130.3

Q ss_pred             EEEEecCCCCCcEEEEEEcCCe-EEEEECCCCceeeeecccccce--eeEEEcCCCCcEEEEEeC-----CCcEEEEEcc
Q 018293          125 VLGLAWNKEFRNILASASADKQ-VKIWDVAAGKCNLTLEHHTDKV--QAVAWNHHSPQILLSGSF-----DRSVVMKDAR  196 (358)
Q Consensus       125 v~~~~~~~~~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~  196 (358)
                      ...++.+|.....++.+-.-|+ ..+||..+++....+....+.-  -.-.|+++| ++|++.-.     .|.|-+||..
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG-~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG-RLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC-CEEEEeccccCCCcEEEEEEECc
Confidence            3467788865777777777664 7789999998887765433221  136899999 77777643     5789999998


Q ss_pred             -cCCCccceeeecCCeeeEEEcCCCCCeEEEEe-----------------cCCeEEEEEcccCCCCCCCCCCCccEE--E
Q 018293          197 -ISTHSGFKWAVAADVESLAWDPHAEHSFVVSL-----------------EDGTIKGFDIRTAKSDPDSTSQQSSFT--L  256 (358)
Q Consensus       197 -~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~--~  256 (358)
                       .-+.+.....+.-....+.+.|++..++++-+                 .+.++...|..++         ..+.+  +
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---------~ll~q~~L  156 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---------ALLEQVEL  156 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---------ceeeeeec
Confidence             33333333344455677888997654444321                 1223444555554         33333  3


Q ss_pred             --eecCCceeEEEecCCCCcEEEEEeCCCc-------EEEEecCCCCceeeEec-----CCCCceeEEEEEcCCCCeEEE
Q 018293          257 --HAHDKAVCTISYNPLVPNLLATGSTDKM-------VKLWDLSNNQPSCIASR-----NPKAGAVFSVAFSEDSPFVLA  322 (358)
Q Consensus       257 --~~~~~~i~~i~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~  322 (358)
                        ..|...|.-+++.++| ..++..-..|.       |.+++....  ......     ....+.+-+|++++++..+.+
T Consensus       157 p~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~  233 (305)
T PF07433_consen  157 PPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV  233 (305)
T ss_pred             CccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence              3467789999999987 55554444332       333333221  111111     123467889999999997677


Q ss_pred             EEccCCeEEEEEccCCCcccc
Q 018293          323 IGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       323 ~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      |+=..|.+.+||..+++.+..
T Consensus       234 tsPrGg~~~~~d~~tg~~~~~  254 (305)
T PF07433_consen  234 TSPRGGRVAVWDAATGRLLGS  254 (305)
T ss_pred             ECCCCCEEEEEECCCCCEeec
Confidence            777889999999999887653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.78  E-value=2.2e-06  Score=79.20  Aligned_cols=235  Identities=15%  Similarity=0.213  Sum_probs=143.8

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      .|..+++.++.+..+|.|.+-|..+.....                            ...-...|.+++|+|+ ...++
T Consensus        75 ~fl~d~~~i~v~~~~G~iilvd~et~~~ei----------------------------vg~vd~GI~aaswS~D-ee~l~  125 (1265)
T KOG1920|consen   75 QFLADTNSICVITALGDIILVDPETLELEI----------------------------VGNVDNGISAASWSPD-EELLA  125 (1265)
T ss_pred             EEecccceEEEEecCCcEEEEcccccceee----------------------------eeeccCceEEEeecCC-CcEEE
Confidence            345677888888889999888776433211                            1124578999999999 77888


Q ss_pred             EEEcCCeEEEEECC----C-------------------Cceeeeeccc---------------------ccceeeEEEcC
Q 018293          140 SASADKQVKIWDVA----A-------------------GKCNLTLEHH---------------------TDKVQAVAWNH  175 (358)
Q Consensus       140 s~~~dg~v~iwd~~----~-------------------~~~~~~~~~~---------------------~~~v~~~~~~~  175 (358)
                      ..+..+++.+-+-.    .                   |+....|++.                     .+.=+++.|--
T Consensus       126 liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg  205 (1265)
T KOG1920|consen  126 LITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG  205 (1265)
T ss_pred             EEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc
Confidence            88887777665421    0                   0111122210                     11123589999


Q ss_pred             CCCcEEEEEe----CC-CcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEE---ecCCeEEEEEcccCCCCCCC
Q 018293          176 HSPQILLSGS----FD-RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS---LEDGTIKGFDIRTAKSDPDS  247 (358)
Q Consensus       176 ~~~~~l~~~~----~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~dg~i~i~d~~~~~~~~~~  247 (358)
                      || .++++..    .+ ..|++||.+ +............-.+++|-|.| ..+++-   +.|+.|.+|.-+....    
T Consensus       206 Dg-~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~h----  278 (1265)
T KOG1920|consen  206 DG-EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRH----  278 (1265)
T ss_pred             CC-cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccc----
Confidence            98 7777732    23 789999987 43333233344556789999954 466653   3566799998765422    


Q ss_pred             CCCCccEEEeecCCceeEEEecCCCCcEEEE---EeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEE
Q 018293          248 TSQQSSFTLHAHDKAVCTISYNPLVPNLLAT---GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG  324 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  324 (358)
                        ............++..++|+.++ ..|++   ......|++|-+.+........+.-.....  +.|+|...+-+..-
T Consensus       279 --g~f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~  353 (1265)
T KOG1920|consen  279 --GEFVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVL  353 (1265)
T ss_pred             --cccccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEE
Confidence              11122223334458999999988 77776   444455999999887654444443332222  67777655444444


Q ss_pred             ccCCeEEEEEc
Q 018293          325 GSKGKLEIWDT  335 (358)
Q Consensus       325 ~~dg~i~vw~~  335 (358)
                      ..+|...++++
T Consensus       354 ~~sG~~~v~~~  364 (1265)
T KOG1920|consen  354 RESGQRLVRDF  364 (1265)
T ss_pred             ecCCcEEEEEE
Confidence            45666555554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=1.7e-06  Score=77.07  Aligned_cols=201  Identities=13%  Similarity=0.125  Sum_probs=133.7

Q ss_pred             cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccc-eeeEEEcCCCCcEEEEEeCCCc-----EEEEEccc
Q 018293          124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDK-VQAVAWNHHSPQILLSGSFDRS-----VVMKDARI  197 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~  197 (358)
                      .|+|+  ++. +..++.|+.+|.|.+.+ +..+.++.++.+... |..+....+. .+|++.++|+.     +++||++.
T Consensus        27 ~isc~--~s~-~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~-~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   27 AISCC--SSS-TGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQ-NFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             ceeEE--cCC-CceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCc-eEEEEEeecCCCCceEEEEecccc
Confidence            55554  555 55899999999999987 445566788887777 5544444433 67888777654     89999875


Q ss_pred             CCCcc--------ceee-----ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCcee
Q 018293          198 STHSG--------FKWA-----VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC  264 (358)
Q Consensus       198 ~~~~~--------~~~~-----~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~  264 (358)
                      .+...        ....     ...++.+++.+.+ -..+|+|-.+|.|..+.-.-.+..     .....-......+|+
T Consensus       102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDr-----gsr~~~~~~~~~pIT  175 (933)
T KOG2114|consen  102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDR-----GSRQDYSHRGKEPIT  175 (933)
T ss_pred             cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhcc-----ccceeeeccCCCCce
Confidence            42111        1111     2456888999885 568999999999998854332111     022222233467899


Q ss_pred             EEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          265 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       265 ~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      .+++..++...+.+++ ...|.+|.+.... ........|..++.|..+++.... +++++ +..+.+|+....+
T Consensus       176 gL~~~~d~~s~lFv~T-t~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  176 GLALRSDGKSVLFVAT-TEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             eeEEecCCceeEEEEe-cceeEEEEecCCC-cceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCCcc
Confidence            9999998855344444 3569999998544 345557788889999999987664 44444 3468999886433

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.77  E-value=3.4e-05  Score=65.74  Aligned_cols=287  Identities=15%  Similarity=0.161  Sum_probs=145.1

Q ss_pred             cCCCcEEEEEEecCC----CceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293            4 NPNDAVIVCARNEDD----VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI   79 (358)
Q Consensus         4 ~p~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v   79 (358)
                      |||++.++.......    ...-.+++|+..++   .+......  .......       .|||+|+.+|... ++.|.+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~---~~~~l~~~--~~~~~~~-------~~sP~g~~~~~v~-~~nly~   67 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG---EITPLTPP--PPKLQDA-------KWSPDGKYIAFVR-DNNLYL   67 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT---EEEESS-E--ETTBSEE-------EE-SSSTEEEEEE-TTEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCC---ceEECcCC--ccccccc-------eeecCCCeeEEEe-cCceEE
Confidence            689999999654321    12347888888875   22222111  1122233       3499999999885 678999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCC-cccEEEEecCCCCCcEEEEEEc-CC------------
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-TDSVLGLAWNKEFRNILASASA-DK------------  145 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~-dg------------  145 (358)
                      ++..++...+ .. ..+ ... .       .....-...+.- -+.-..+-|||++ ++||.... +.            
T Consensus        68 ~~~~~~~~~~-lT-~dg-~~~-i-------~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~~~d~~~v~~~~~~~~~~  135 (353)
T PF00930_consen   68 RDLATGQETQ-LT-TDG-EPG-I-------YNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFLRFDEREVPEYPLPDYSP  135 (353)
T ss_dssp             ESSTTSEEEE-SE-S---TTT-E-------EESB--HHHHHHTSSSSBSEEE-TTS-SEEEEEEEE-TTS-EEEEEEESS
T ss_pred             EECCCCCeEE-ec-ccc-cee-E-------EcCccceeccccccccccceEECCCC-CEEEEEEECCcCCceEEeeccCC
Confidence            9876552211 10 010 000 0       000000000000 0112456788884 44444322 22            


Q ss_pred             -----------------------eEEEEECCCCceee-e-e---cccccceeeEEEcCCCCcEEEE-EeCC---CcEEEE
Q 018293          146 -----------------------QVKIWDVAAGKCNL-T-L---EHHTDKVQAVAWNHHSPQILLS-GSFD---RSVVMK  193 (358)
Q Consensus       146 -----------------------~v~iwd~~~~~~~~-~-~---~~~~~~v~~~~~~~~~~~~l~~-~~~d---g~i~i~  193 (358)
                                             .+.|+|+.+++... . .   ......+..+.|.+++..+++. ...+   ..+.++
T Consensus       136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~  215 (353)
T PF00930_consen  136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLC  215 (353)
T ss_dssp             STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEE
T ss_pred             ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEE
Confidence                                   24445555554321 1 1   1234567888999988323333 2322   236667


Q ss_pred             EcccCCCccceee-ecCC---eeeEEEc-CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeE-EE
Q 018293          194 DARISTHSGFKWA-VAAD---VESLAWD-PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT-IS  267 (358)
Q Consensus       194 d~~~~~~~~~~~~-~~~~---i~~~~~~-~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~-i~  267 (358)
                      |..++........ ....   .....+. +++..++.....+|.-++|-+....        .....+....-.|.. +.
T Consensus       216 d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~--------~~~~~lT~G~~~V~~i~~  287 (353)
T PF00930_consen  216 DASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG--------GKPRQLTSGDWEVTSILG  287 (353)
T ss_dssp             EECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS--------SEEEESS-SSS-EEEEEE
T ss_pred             ECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc--------cceeccccCceeecccce
Confidence            7766554332222 1222   2345554 6677777777788866665555431        233455555556644 67


Q ss_pred             ecCCCCcEEEEEeCCC----cEEEEecC-CCCceeeEecCCCCceeEEEEEcCCCCeEEEEEcc
Q 018293          268 YNPLVPNLLATGSTDK----MVKLWDLS-NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS  326 (358)
Q Consensus       268 ~~~~~~~~l~~~~~dg----~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  326 (358)
                      +++++..+.+++..++    .|+.-++. .+.   ...+....+.-..+.|||++++++.+++.
T Consensus       288 ~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~---~~~LT~~~~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  288 WDEDNNRIYFTANGDNPGERHLYRVSLDSGGE---PKCLTCEDGDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             EECTSSEEEEEESSGGTTSBEEEEEETTETTE---EEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred             EcCCCCEEEEEecCCCCCceEEEEEEeCCCCC---eEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence            7888756666776633    46566666 444   33333333323689999999987776654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.77  E-value=2.1e-07  Score=81.02  Aligned_cols=202  Identities=17%  Similarity=0.266  Sum_probs=139.1

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc---------------eeeeecccccceeeEEEcCCCCcEEEEEe
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK---------------CNLTLEHHTDKVQAVAWNHHSPQILLSGS  185 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  185 (358)
                      ......|++|+.. ..++|+|+.||.+++..+.+..               .-+++.+|...|.-+.|+... +.|-++.
T Consensus        13 nnvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSD   90 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSD   90 (1189)
T ss_pred             CCceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccC
Confidence            4467899999998 5699999999999999876431               234667999999999999887 7899999


Q ss_pred             CCCcEEEEEcccCCCccc--eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCce
Q 018293          186 FDRSVVMKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  263 (358)
Q Consensus       186 ~dg~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i  263 (358)
                      .+|.|.+|-+-.+.-...  .....+-|.+++|+.+| ..++....||.|.+=.+...+          +..-.-.....
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNR----------IwgKeLkg~~l  159 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNR----------IWGKELKGQLL  159 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccce----------ecchhcchhec
Confidence            999999999887754322  23345678999999965 477777888888776665431          11111111234


Q ss_pred             eEEEecCCCCcEEEEEeCCCcEEEEecCCCC-----ceeeEe----cCCCCceeEEEEEc--------CCCCeEEEEEcc
Q 018293          264 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQ-----PSCIAS----RNPKAGAVFSVAFS--------EDSPFVLAIGGS  326 (358)
Q Consensus       264 ~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~----~~~~~~~v~~~~~~--------~~~~~~l~~~~~  326 (358)
                      ..+.|++|. ..++.+-..|.+.+||.+..-     ..+...    +......|-.+.|.        |+.+ .|+.+-.
T Consensus       160 ~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~  237 (1189)
T KOG2041|consen  160 AHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYA  237 (1189)
T ss_pred             cceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEc
Confidence            578999988 677777778999999976531     111111    11112235555553        4666 5777888


Q ss_pred             CCeEEEEEccC
Q 018293          327 KGKLEIWDTLS  337 (358)
Q Consensus       327 dg~i~vw~~~~  337 (358)
                      +|.+.+-.-.+
T Consensus       238 nGr~QiMR~eN  248 (1189)
T KOG2041|consen  238 NGRMQIMRSEN  248 (1189)
T ss_pred             CceehhhhhcC
Confidence            88777654433

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.77  E-value=1.7e-06  Score=74.20  Aligned_cols=132  Identities=16%  Similarity=0.178  Sum_probs=89.4

Q ss_pred             cCCeeeEEEcCCCCCeEEEE----ecCCe----EEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE
Q 018293          208 AADVESLAWDPHAEHSFVVS----LEDGT----IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  279 (358)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~~----~~dg~----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~  279 (358)
                      +....++.|+-..++.+.+-    +.+|.    -.+|++...+.      ......-......+.+++++|+. ..++.|
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl------qrvsvtsipL~s~v~~ca~sp~E-~kLvlG  277 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL------QRVSVTSIPLPSQVICCARSPSE-DKLVLG  277 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce------eEEEEEEEecCCcceEEecCccc-ceEEEE
Confidence            34456677776556566553    23443    34666654421      01112223457789999999987 899999


Q ss_pred             eCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcCC
Q 018293          280 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP  351 (358)
Q Consensus       280 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  351 (358)
                      +.||.|.+||...+..  .  .....-..+.++|+|+|. ++++|+..|.+.+||+.-...-.+...+...|
T Consensus       278 C~DgSiiLyD~~~~~t--~--~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P  344 (545)
T PF11768_consen  278 CEDGSIILYDTTRGVT--L--LAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLSEDATP  344 (545)
T ss_pred             ecCCeEEEEEcCCCee--e--eeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeeccccCCC
Confidence            9999999999877642  1  112334577899999999 68889999999999998766555555554433

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.75  E-value=2.2e-05  Score=68.04  Aligned_cols=230  Identities=10%  Similarity=0.043  Sum_probs=131.9

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEE-EecCCCCCcEEEEEE
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS  142 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~  142 (358)
                      ++..++.++.+|.+.-+|..+++..-.....                            ..+.+ .... + + .++.+.
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~----------------------------~~~~ssP~v~-~-~-~v~v~~  167 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVA----------------------------GEALSRPVVS-D-G-LVLVHT  167 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccCC----------------------------CceecCCEEE-C-C-EEEEEC
Confidence            3566777888999999999887765532210                            11111 1111 2 3 566778


Q ss_pred             cCCeEEEEECCCCceeeeecccccceee-EEEcC--CCCcEEEEEeCCCcEEEEEcccCCCccceee-ecC------Cee
Q 018293          143 ADKQVKIWDVAAGKCNLTLEHHTDKVQA-VAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWA-VAA------DVE  212 (358)
Q Consensus       143 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~-~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~------~i~  212 (358)
                      .++.+..+|.++|+.+............ ..-+|  .+ ..++.++.+|.+..+|..+++..-.... ...      ...
T Consensus       168 ~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~  246 (394)
T PRK11138        168 SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLV  246 (394)
T ss_pred             CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhccc
Confidence            8899999999999988777532111000 00011  12 3466777889999999887765432110 000      000


Q ss_pred             eEEEcCC-CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecC
Q 018293          213 SLAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  291 (358)
Q Consensus       213 ~~~~~~~-~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~  291 (358)
                      .+.-+|- .+..+++++.+|.+..+|..++         +.+.....  .....+..  .+ ..++.++.+|.+..+|..
T Consensus       247 ~~~~sP~v~~~~vy~~~~~g~l~ald~~tG---------~~~W~~~~--~~~~~~~~--~~-~~vy~~~~~g~l~ald~~  312 (394)
T PRK11138        247 DVDTTPVVVGGVVYALAYNGNLVALDLRSG---------QIVWKREY--GSVNDFAV--DG-GRIYLVDQNDRVYALDTR  312 (394)
T ss_pred             ccCCCcEEECCEEEEEEcCCeEEEEECCCC---------CEEEeecC--CCccCcEE--EC-CEEEEEcCCCeEEEEECC
Confidence            1111110 1236777778999999999887         33333221  11112222  23 567778889999999999


Q ss_pred             CCCceeeEecCCCC-ceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          292 NNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       292 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      +++.  +....... ....+.... ++  .++.++.||.+.+.|..+|+.+.+.
T Consensus       313 tG~~--~W~~~~~~~~~~~sp~v~-~g--~l~v~~~~G~l~~ld~~tG~~~~~~  361 (394)
T PRK11138        313 GGVE--LWSQSDLLHRLLTAPVLY-NG--YLVVGDSEGYLHWINREDGRFVAQQ  361 (394)
T ss_pred             CCcE--EEcccccCCCcccCCEEE-CC--EEEEEeCCCEEEEEECCCCCEEEEE
Confidence            8873  22221111 111222221 33  3666889999999999999877553

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.73  E-value=6e-09  Score=92.42  Aligned_cols=201  Identities=16%  Similarity=0.214  Sum_probs=135.0

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      +|+-+.++|++|+..|.|++|++.++....                           ...+|..+|+-+.-+.+|..+|.
T Consensus      1108 afs~~~~hL~vG~~~Geik~~nv~sG~~e~---------------------------s~ncH~SavT~vePs~dgs~~Lt 1160 (1516)
T KOG1832|consen 1108 AFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---------------------------SVNCHQSAVTLVEPSVDGSTQLT 1160 (1516)
T ss_pred             EeecCCceEEeeeccceEEEEEccCccccc---------------------------cccccccccccccccCCcceeee
Confidence            458899999999999999999999876654                           34479999999999999665565


Q ss_pred             EEEcCC-eEEEEECCC-CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee----eecCCeee
Q 018293          140 SASADK-QVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----AVAADVES  213 (358)
Q Consensus       140 s~~~dg-~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~i~~  213 (358)
                      +++... ...+|++.. +...+.+.+    -.++.|+... ..-+.|+......+||+++........    .....-++
T Consensus      1161 sss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1161 SSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNL 1235 (1516)
T ss_pred             eccccCchHHHhccccccCccccccc----cceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccc
Confidence            555544 578999864 445555543    4578888765 455566666788999999987654322    22334478


Q ss_pred             EEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293          214 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  293 (358)
Q Consensus       214 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~  293 (358)
                      +.|+|.+. +++   .||  .+||.+..         ..++.+...... -.-.|+|.| .-++.-+.     |||+++-
T Consensus      1236 a~FsP~D~-LIl---ndG--vLWDvR~~---------~aIh~FD~ft~~-~~G~FHP~g-~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1236 AHFSPCDT-LIL---NDG--VLWDVRIP---------EAIHRFDQFTDY-GGGGFHPSG-NEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred             cccCCCcc-eEe---eCc--eeeeeccH---------HHHhhhhhheec-ccccccCCC-ceEEeech-----hhhhHHH
Confidence            89999654 333   355  47999987         445555443322 234699998 66666554     8999987


Q ss_pred             CceeeEecCCCCceeEEEEEcCCCC
Q 018293          294 QPSCIASRNPKAGAVFSVAFSEDSP  318 (358)
Q Consensus       294 ~~~~~~~~~~~~~~v~~~~~~~~~~  318 (358)
                      +.  +.....  -.-..+.|+..|.
T Consensus      1294 ~l--Lh~VP~--Ldqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1294 KL--LHSVPS--LDQCAVTFNSTGD 1314 (1516)
T ss_pred             HH--HhcCcc--ccceEEEeccCcc
Confidence            63  222221  1123456666665

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.68  E-value=7.4e-06  Score=71.57  Aligned_cols=136  Identities=13%  Similarity=0.196  Sum_probs=90.1

Q ss_pred             ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEc
Q 018293            3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDL   82 (358)
Q Consensus         3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~   82 (358)
                      +.-++..++.|.+.+     .+|+|+...+....+....    .....++..+      |++..++|.|+..|.|.++.+
T Consensus        41 ~dst~~~l~~GsS~G-----~lyl~~R~~~~~~~~~~~~----~~~~~~~~~v------s~~e~lvAagt~~g~V~v~ql  105 (726)
T KOG3621|consen   41 VDATEEYLAMGSSAG-----SVYLYNRHTGEMRKLKNEG----ATGITCVRSV------SSVEYLVAAGTASGRVSVFQL  105 (726)
T ss_pred             eecCCceEEEecccc-----eEEEEecCchhhhcccccC----ccceEEEEEe------cchhHhhhhhcCCceEEeehh
Confidence            345677888888777     8999998876433333221    1222233332      678889999999999999998


Q ss_pred             ccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC----cee
Q 018293           83 DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG----KCN  158 (358)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~  158 (358)
                      +.........+.                     ..-..|...|+|++|+++ +..+++|...|.|..-.+...    -..
T Consensus       106 ~~~~p~~~~~~t---------------------~~d~~~~~rVTal~Ws~~-~~k~ysGD~~Gkv~~~~L~s~~~~~~~~  163 (726)
T KOG3621|consen  106 NKELPRDLDYVT---------------------PCDKSHKCRVTALEWSKN-GMKLYSGDSQGKVVLTELDSRQAFLSKS  163 (726)
T ss_pred             hccCCCcceeec---------------------cccccCCceEEEEEeccc-ccEEeecCCCceEEEEEechhhhhcccc
Confidence            863322222111                     111238899999999999 679999999999999888762    112


Q ss_pred             eeecccccceeeEEEcC
Q 018293          159 LTLEHHTDKVQAVAWNH  175 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~  175 (358)
                      +.+-...+.|..+....
T Consensus       164 q~il~~ds~IVQlD~~q  180 (726)
T KOG3621|consen  164 QEILSEDSEIVQLDYLQ  180 (726)
T ss_pred             ceeeccCcceEEeeccc
Confidence            23333456777776654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.67  E-value=6.8e-06  Score=70.77  Aligned_cols=202  Identities=14%  Similarity=0.112  Sum_probs=119.1

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcC---CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCc--EEEEEc
Q 018293          121 HTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKDA  195 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~  195 (358)
                      -...+..-+|+|++..+....-..   ..+.++|+++++...... ....-..-+|+|+|..++++...||.  |.++|+
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence            345566778999965544333222   358999999886544443 23334557899999777888888886  555566


Q ss_pred             ccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcE
Q 018293          196 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  275 (358)
Q Consensus       196 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  275 (358)
                      ....... +....+.-..-.|+|+|..++++.+..|.-.+|-.....        .....+......-..-.|+|+|..+
T Consensus       270 ~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g--------~~~~riT~~~~~~~~p~~SpdG~~i  340 (425)
T COG0823         270 DGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG--------SQVTRLTFSGGGNSNPVWSPDGDKI  340 (425)
T ss_pred             CCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC--------CceeEeeccCCCCcCccCCCCCCEE
Confidence            6665333 233333344678999999888888888876655554331        2223333333333378899999544


Q ss_pred             EEEEeCCCc--EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          276 LATGSTDKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       276 l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      ++....+|.  |.+.|+.++.......   .......-.|.+++..++.+++.-+.=.++.+
T Consensus       341 ~~~~~~~g~~~i~~~~~~~~~~~~~lt---~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~  399 (425)
T COG0823         341 VFESSSGGQWDIDKNDLASGGKIRILT---STYLNESPSWAPNGRMIMFSSGQGGGSVLSLV  399 (425)
T ss_pred             EEEeccCCceeeEEeccCCCCcEEEcc---ccccCCCCCcCCCCceEEEeccCCCCceEEEe
Confidence            445544455  6677776665212222   22233345778888765554444333333333

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.66  E-value=1.2e-08  Score=87.40  Aligned_cols=203  Identities=19%  Similarity=0.236  Sum_probs=136.2

Q ss_pred             CcccEEEEecCCCCC-cEEEEEEcCCeEEEEECCCCce--eeeecccccceeeEEEcCCCCcEEEEEe----CCCcEEEE
Q 018293          121 HTDSVLGLAWNKEFR-NILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGS----FDRSVVMK  193 (358)
Q Consensus       121 h~~~v~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~i~  193 (358)
                      ....+.|++++-+.. .+++.|..+|.|.+-..+...-  -....++..++++++|++-+.+.|++|-    .|..+.+|
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            345678888765533 5889999999999988764422  2344667889999999997646666653    36689999


Q ss_pred             EcccCCC--c---cceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEe
Q 018293          194 DARISTH--S---GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY  268 (358)
Q Consensus       194 d~~~~~~--~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  268 (358)
                      |+.+.-.  .   ...........+++|.. +..++.+|.....+.++|+|...          .......+..+..+..
T Consensus       135 di~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~----------~~~~svnTk~vqG~tV  203 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSL----------DSVSSVNTKYVQGITV  203 (783)
T ss_pred             ecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhh----------hhhhhhhhhhccccee
Confidence            9987621  1   11112334566888885 56688999999999999999431          1111223345677888


Q ss_pred             cCCCCcEEEEEeCCCcEEEEe-cCCCCceeeEecCCC----CceeEEEEEcCCCCeEEEEEccC-CeEEEEEcc
Q 018293          269 NPLVPNLLATGSTDKMVKLWD-LSNNQPSCIASRNPK----AGAVFSVAFSEDSPFVLAIGGSK-GKLEIWDTL  336 (358)
Q Consensus       269 ~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d-g~i~vw~~~  336 (358)
                      .|-.++++++-. ||.|.+|| .++-+. .+......    ...+..++|+|....++++...| ++|++|++.
T Consensus       204 dp~~~nY~cs~~-dg~iAiwD~~rnien-pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  204 DPFSPNYFCSNS-DGDIAIWDTYRNIEN-PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cCCCCCceeccc-cCceeeccchhhhcc-HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            885557877765 99999999 433221 12222211    22488999999765567766654 789999985

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.60  E-value=8.9e-05  Score=63.98  Aligned_cols=114  Identities=18%  Similarity=0.272  Sum_probs=82.0

Q ss_pred             ccEEEEecCCCCCcEEEEE----EcCCe----EEEEECCCCcee----eeecccccceeeEEEcCCCCcEEEEEeCCCcE
Q 018293          123 DSVLGLAWNKEFRNILASA----SADKQ----VKIWDVAAGKCN----LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV  190 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~----~~dg~----v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  190 (358)
                      ....++.|+-..++.+.+.    +.+|.    -++|++...+..    ..+ .....+.+++++|+. ..++.|+.||+|
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E-~kLvlGC~DgSi  283 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSE-DKLVLGCEDGSI  283 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCccc-ceEEEEecCCeE
Confidence            3456777876545555554    23343    456666554321    122 367789999999999 889999999999


Q ss_pred             EEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293          191 VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  241 (358)
Q Consensus       191 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~  241 (358)
                      .+||...+...  .....-.++.++|+|++ .++++|+..|.+.+||+.-.
T Consensus       284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEEcCCCeee--eeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeecC
Confidence            99998766433  23445568899999954 59999999999999999765

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.57  E-value=0.00014  Score=59.40  Aligned_cols=273  Identities=15%  Similarity=0.129  Sum_probs=147.9

Q ss_pred             EEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC----------CCCeEEEEEcccccCcCcee
Q 018293           23 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS----------MEPAIEIWDLDVIDEVQPHV   92 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~----------~dg~i~vw~~~~~~~~~~~~   92 (358)
                      ++++++...+   .+...-....-.          .+..||+++.+++++          ..-.|.+||..+......+.
T Consensus        18 rv~viD~d~~---k~lGmi~~g~~~----------~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~   84 (342)
T PF06433_consen   18 RVYVIDADSG---KLLGMIDTGFLG----------NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE   84 (342)
T ss_dssp             EEEEEETTTT---EEEEEEEEESSE----------EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE
T ss_pred             eEEEEECCCC---cEEEEeecccCC----------ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe
Confidence            8899997775   444333222211          112389999988753          23479999998876655544


Q ss_pred             ecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE--cCCeEEEEECCCCceeeeecccccceee
Q 018293           93 ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS--ADKQVKIWDVAAGKCNLTLEHHTDKVQA  170 (358)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~  170 (358)
                      +..+              ++    .+  .......++++.+ +++++..-  --..|.|-|++.++.+.++.-. +   |
T Consensus        85 iP~k--------------~R----~~--~~~~~~~~~ls~d-gk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G---C  139 (342)
T PF06433_consen   85 IPPK--------------PR----AQ--VVPYKNMFALSAD-GKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G---C  139 (342)
T ss_dssp             ETTS---------------B--------BS--GGGEEE-TT-SSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S---E
T ss_pred             cCCc--------------ch----he--ecccccceEEccC-CcEEEEEccCCCCeEEEEECCCCceeeeecCC-C---E
Confidence            4321              00    00  0011223466777 44554442  2357999999999988877632 2   2


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-ee----cCC-eeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCC
Q 018293          171 VAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AV----AAD-VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD  244 (358)
Q Consensus       171 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~----~~~-i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~  244 (358)
                      .-.-|.++.-|.+-+.||.+.-..+.......... ..    ..+ ...-++...++ .++--+.+|.|+--|+..... 
T Consensus       140 ~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~-  217 (342)
T PF06433_consen  140 WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSA-  217 (342)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSE-
T ss_pred             EEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCcc-
Confidence            22234444568888999999999887443322111 11    111 11222333223 444466788888888876531 


Q ss_pred             CCCCCCCccEEEeec----------CCceeEEEecCCCCcEEEEE--eCCC-------cEEEEecCCCCceeeEecCCCC
Q 018293          245 PDSTSQQSSFTLHAH----------DKAVCTISYNPLVPNLLATG--STDK-------MVKLWDLSNNQPSCIASRNPKA  305 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~----------~~~i~~i~~~~~~~~~l~~~--~~dg-------~i~i~d~~~~~~~~~~~~~~~~  305 (358)
                            ........-          .+.-.-+++++..+++.+.-  +.++       .|.++|+.+.+.+....+   .
T Consensus       218 ------~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~  288 (342)
T PF06433_consen  218 ------KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---E  288 (342)
T ss_dssp             ------EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---E
T ss_pred             ------cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---C
Confidence                  111111110          12334567776552333321  1122       277788888874333333   2


Q ss_pred             ceeEEEEEcCCCCeEEEE-EccCCeEEEEEccCCCccccc
Q 018293          306 GAVFSVAFSEDSPFVLAI-GGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       306 ~~v~~~~~~~~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      .++.+|..+.+.+-+|++ ...++.+.+||..+|+.+++.
T Consensus       289 ~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  289 HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence            467799999987655654 456899999999999887653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.56  E-value=7.2e-06  Score=73.24  Aligned_cols=105  Identities=17%  Similarity=0.242  Sum_probs=81.5

Q ss_pred             ccCCCceEEecCC----CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCc
Q 018293           61 DREKGNFMAVGSM----EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  136 (358)
Q Consensus        61 ~s~~~~~l~~g~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  136 (358)
                      |+|...++|+++.    .|.|.||- ++++.....                            ...-.+++++|+|. .-
T Consensus        23 WHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V----------------------------t~P~hatSLCWHpe-~~   72 (1416)
T KOG3617|consen   23 WHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV----------------------------TYPVHATSLCWHPE-EF   72 (1416)
T ss_pred             cCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc----------------------------ccceehhhhccChH-HH
Confidence            4888889988764    47888874 333322111                            11223567999999 77


Q ss_pred             EEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 018293          137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  196 (358)
Q Consensus       137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  196 (358)
                      .|+.|-.-|.+.+|...+.+.-.....|+.+|..+.|+++| ..++++..-|.+.+|...
T Consensus        73 vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   73 VLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             HHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence            89999999999999988776655667799999999999999 899999999999999865

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.53  E-value=1.4e-05  Score=68.82  Aligned_cols=180  Identities=15%  Similarity=0.138  Sum_probs=111.6

Q ss_pred             eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCC---CcEEEEEcccCCCccceeeecCCeeeEEEcCCCCC
Q 018293          146 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  222 (358)
Q Consensus       146 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  222 (358)
                      .+.+-|.. +.....+......+..-+|+|++..+....-..   ..+.++|+.+++... .......-..-+|+|++..
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-i~~~~g~~~~P~fspDG~~  251 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-ILNFNGNNGAPAFSPDGSK  251 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce-eeccCCccCCccCCCCCCE
Confidence            34444433 444445554556677789999985544443322   358899998887655 3334555667789999988


Q ss_pred             eEEEEecCCeE--EEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc--EEEEecCCCCceee
Q 018293          223 SFVVSLEDGTI--KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--VKLWDLSNNQPSCI  298 (358)
Q Consensus       223 ~~~~~~~dg~i--~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~  298 (358)
                      ++++...||..  +++|+...         . ...+....+.-..-.|+|+|..++++.+..|.  |.+++........+
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~---------~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri  321 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGK---------N-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL  321 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCC---------c-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence            88888888864  55555554         2 22233333334467899999666677766776  55666666653222


Q ss_pred             EecCCCCceeEEEEEcCCCCeEEEEEccCCe--EEEEEccCCCc
Q 018293          299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLSDAG  340 (358)
Q Consensus       299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~vw~~~~~~~  340 (358)
                       +...  +.-..-.|+|||.+++.....+|.  |.+.|+.++..
T Consensus       322 -T~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~  362 (425)
T COG0823         322 -TFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK  362 (425)
T ss_pred             -eccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence             2222  222267899999986666544455  77777766653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.52  E-value=3.9e-05  Score=71.38  Aligned_cols=152  Identities=17%  Similarity=0.309  Sum_probs=89.6

Q ss_pred             EEEecCCCCCcEEEEE-----EcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEE---eCCCcEEEEEccc
Q 018293          126 LGLAWNKEFRNILASA-----SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG---SFDRSVVMKDARI  197 (358)
Q Consensus       126 ~~~~~~~~~~~~l~s~-----~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~  197 (358)
                      +.|.|-.| +.++|+.     .....+++||-+ |.+-..-......=.+++|-|.| ..+++-   +.|+.|.++.-+.
T Consensus       199 ~~IsWRgD-g~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNG  275 (1265)
T KOG1920|consen  199 TSISWRGD-GEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNG  275 (1265)
T ss_pred             ceEEEccC-CcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCC
Confidence            46889988 6677773     222789999976 54333323233444679999988 666664   3466799998665


Q ss_pred             CCCccc---eeeecCCeeeEEEcCCCCCeEEE---EecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC
Q 018293          198 STHSGF---KWAVAADVESLAWDPHAEHSFVV---SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  271 (358)
Q Consensus       198 ~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  271 (358)
                      .+....   ......++..++|+.++ .++++   ......|++|-+.+..-       -....+.......  +.|+|.
T Consensus       276 L~hg~f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~NyhW-------YLKq~l~~~~~~~--~~W~p~  345 (1265)
T KOG1920|consen  276 LRHGEFVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNYHW-------YLKQELQFSQKAL--LMWDPV  345 (1265)
T ss_pred             ccccccccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCeEE-------EEEEEEecccccc--ccccCC
Confidence            433221   12223349999999954 46666   44445599999887531       1122222222221  677775


Q ss_pred             CCcEEEEEeCCCcEEEEec
Q 018293          272 VPNLLATGSTDKMVKLWDL  290 (358)
Q Consensus       272 ~~~~l~~~~~dg~i~i~d~  290 (358)
                      .+..+..-..+|...++|+
T Consensus       346 ~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  346 TEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             CceeEEEEecCCcEEEEEE
Confidence            5455554445666555554

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.52  E-value=3.3e-05  Score=65.97  Aligned_cols=263  Identities=11%  Similarity=0.073  Sum_probs=132.0

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcc-----------cccccc----cccC-CceeccccccCCCcc
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGID-----------EEKKKK----KSKK-GKKSSIKYKKGSHTD  123 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~-----------~~~~~~----~~~~-~~~~~~~~~~~~h~~  123 (358)
                      .|+++..-|++|...|.|.||.+...+...........+           ......    ..+. .....+...+....+
T Consensus         8 s~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g   87 (395)
T PF08596_consen    8 SFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQG   87 (395)
T ss_dssp             EEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-
T ss_pred             EecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccCC
Confidence            347788889999999999999987654432111111100           000000    0111 123445555666689


Q ss_pred             cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee--cc------cccceeeEEEcC---CC----CcEEEEEeCCC
Q 018293          124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL--EH------HTDKVQAVAWNH---HS----PQILLSGSFDR  188 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~------~~~~v~~~~~~~---~~----~~~l~~~~~dg  188 (358)
                      +|++++.|.- + ++|.|..+|.+.|.|++....+..-  ..      ....++++.|.-   .+    .-.+++|...|
T Consensus        88 ~vtal~~S~i-G-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G  165 (395)
T PF08596_consen   88 PVTALKNSDI-G-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSG  165 (395)
T ss_dssp             SEEEEEE-BT-S-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTS
T ss_pred             cEeEEecCCC-c-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCC
Confidence            9999999866 4 9999999999999999876655442  11      234678888851   11    14688899999


Q ss_pred             cEEEEEccc-C-C-Cccc----eeeecCCeeeEE-EcCCC-------------------CCeEEEEecCCeEEEEEcccC
Q 018293          189 SVVMKDARI-S-T-HSGF----KWAVAADVESLA-WDPHA-------------------EHSFVVSLEDGTIKGFDIRTA  241 (358)
Q Consensus       189 ~i~i~d~~~-~-~-~~~~----~~~~~~~i~~~~-~~~~~-------------------~~~~~~~~~dg~i~i~d~~~~  241 (358)
                      .+.+|.+.- . . ....    ...+.+++..+. ++.+.                   -.-+++...+..++++...+.
T Consensus       166 ~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~  245 (395)
T PF08596_consen  166 NVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKS  245 (395)
T ss_dssp             EEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT--
T ss_pred             CEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCC
Confidence            999998752 1 1 1100    112334444443 32211                   112444455778999988876


Q ss_pred             CCCCCCCCCCccEEEeecCCceeEEEecC----CCCcEEEEEeCCCcEEEEecCCCCceeeEecCC--CCceeEEEEEcC
Q 018293          242 KSDPDSTSQQSSFTLHAHDKAVCTISYNP----LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP--KAGAVFSVAFSE  315 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~v~~~~~~~  315 (358)
                               +..............+.+.+    .+...|++-..+|.+++|.+...+.+.......  ....+....+++
T Consensus       246 ---------k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~  316 (395)
T PF08596_consen  246 ---------KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR  316 (395)
T ss_dssp             ----------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred             ---------cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence                     33333332222233344431    123678888899999999999987544444421  223345677899


Q ss_pred             CCCeEEEEEccCCeEEEEEc
Q 018293          316 DSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       316 ~~~~~l~~~~~dg~i~vw~~  335 (358)
                      +|+. ++-.+. ..+.++.+
T Consensus       317 ~Gdi-~~~~gp-sE~~l~sv  334 (395)
T PF08596_consen  317 NGDI-FYWTGP-SEIQLFSV  334 (395)
T ss_dssp             TS-E-EEE-SS-SEEEEEEE
T ss_pred             CCCE-EEEeCc-ccEEEEEE
Confidence            9984 444433 23444433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.46  E-value=1.9e-05  Score=70.67  Aligned_cols=110  Identities=15%  Similarity=0.268  Sum_probs=75.5

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      +.+|..++++++.-+.+ +...+.+|-....  |..  +-+  .|....       +++|+|..-.|+.|-.-|.+.+|.
T Consensus        22 SWHPsePlfAVA~fS~e-r~GSVtIfadtGE--Pqr--~Vt--~P~hat-------SLCWHpe~~vLa~gwe~g~~~v~~   87 (1416)
T KOG3617|consen   22 SWHPSEPLFAVASFSPE-RGGSVTIFADTGE--PQR--DVT--YPVHAT-------SLCWHPEEFVLAQGWEMGVSDVQK   87 (1416)
T ss_pred             ccCCCCceeEEEEecCC-CCceEEEEecCCC--CCc--ccc--cceehh-------hhccChHHHHHhhccccceeEEEe
Confidence            57899999999965543 3345555543321  111  111  111112       334588888899999999999999


Q ss_pred             cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECC
Q 018293           82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  153 (358)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  153 (358)
                      .++.+...                           ....|..+|..+.||++ +..++++..-|.|.+|...
T Consensus        88 ~~~~e~ht---------------------------v~~th~a~i~~l~wS~~-G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   88 TNTTETHT---------------------------VVETHPAPIQGLDWSHD-GTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cCCceeee---------------------------eccCCCCCceeEEecCC-CCeEEEcCCCceeEEEEee
Confidence            87533221                           22359999999999999 5699999999999999875

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.46  E-value=0.00033  Score=54.29  Aligned_cols=103  Identities=13%  Similarity=0.105  Sum_probs=69.7

Q ss_pred             CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEE-EecCCCCCcEEEEEEc
Q 018293           65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASASA  143 (358)
Q Consensus        65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~~  143 (358)
                      |++++.|...|.+++.+.+++.........+                            .|.+ ....++ +.++..|+.
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~----------------------------~vk~~a~~d~~-~glIycgsh  113 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE----------------------------TVKVRAQCDFD-GGLIYCGSH  113 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehh----------------------------hhccceEEcCC-CceEEEecC
Confidence            7789999999999999999887665444332                            1111 123445 459999999


Q ss_pred             CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  197 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  197 (358)
                      |++....|.++..++...+.......+-+..|-. ..|..+...|.+.--....
T Consensus       114 d~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  114 DGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVTKNP  166 (354)
T ss_pred             CCcEEEecccccceEEecccCCceeccceecCCC-ceEEEEeccceEEEEccCC
Confidence            9999999999998888876544444444555533 3455555666665544443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.44  E-value=0.00014  Score=56.21  Aligned_cols=149  Identities=10%  Similarity=0.007  Sum_probs=98.9

Q ss_pred             cCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecC
Q 018293          130 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  209 (358)
Q Consensus       130 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  209 (358)
                      ..++...+++.|+..+.+.--|.++|+...+-. ....+.+-+.- -| ++++.|+..|.+++.+.+++.........+.
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vg-dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~   94 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VG-DFVVLGCYSGGLYFLCVKTGSQIWNFVILET   94 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-EC-CEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence            344546789999999999999999998766543 22333332222 23 6799999999999999999977653333332


Q ss_pred             CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 018293          210 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  289 (358)
Q Consensus       210 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d  289 (358)
                      --......++ ..++.+|+.|++.+..|.++.         ..+.+.+...+-..+-++.|-. .-|+.+...|.+.--.
T Consensus        95 vk~~a~~d~~-~glIycgshd~~~yalD~~~~---------~cVykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt  163 (354)
T KOG4649|consen   95 VKVRAQCDFD-GGLIYCGSHDGNFYALDPKTY---------GCVYKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVT  163 (354)
T ss_pred             hccceEEcCC-CceEEEecCCCcEEEeccccc---------ceEEecccCCceeccceecCCC-ceEEEEeccceEEEEc
Confidence            2223344554 459999999999999999987         6677766555555556666633 3444445556554444


Q ss_pred             cCC
Q 018293          290 LSN  292 (358)
Q Consensus       290 ~~~  292 (358)
                      ...
T Consensus       164 ~~~  166 (354)
T KOG4649|consen  164 KNP  166 (354)
T ss_pred             cCC
Confidence            443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.43  E-value=6.7e-05  Score=60.19  Aligned_cols=180  Identities=12%  Similarity=0.074  Sum_probs=105.7

Q ss_pred             CCeEEEEECCCCceeeeecccccceeeEE--EcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCC
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVA--WNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  221 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  221 (358)
                      +|+|..||..+|+.+...... .......  ..+++ ..+++++.++.+..||..+++....... ...+......  .+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~-~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~--~~   76 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLG-PGIGGPVATAVPDG-GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV--DG   76 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECS-SSCSSEEETEEEET-TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--ET
T ss_pred             CCEEEEEECCCCCEEEEEECC-CCCCCccceEEEeC-CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--cc
Confidence            689999999999988887531 1122222  22234 5677778999999999988876542222 3332222111  23


Q ss_pred             CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eecC---CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCcee
Q 018293          222 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHD---KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  297 (358)
Q Consensus       222 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  297 (358)
                      ..+++++.++.+..+|..++         +..... ....   ...........+ ..++++..++.|..+|+++++..-
T Consensus        77 ~~v~v~~~~~~l~~~d~~tG---------~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w  146 (238)
T PF13360_consen   77 GRVYVGTSDGSLYALDAKTG---------KVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLW  146 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTS---------CEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEE
T ss_pred             cccccccceeeeEecccCCc---------ceeeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecCCCcEEE
Confidence            36777778889999999888         555553 2221   111112222224 678888889999999999998544


Q ss_pred             eEecCCCCc--e------eEEEEEcCCCCeEEEEEccCCe-EEEEEccCCCcc
Q 018293          298 IASRNPKAG--A------VFSVAFSEDSPFVLAIGGSKGK-LEIWDTLSDAGI  341 (358)
Q Consensus       298 ~~~~~~~~~--~------v~~~~~~~~~~~~l~~~~~dg~-i~vw~~~~~~~~  341 (358)
                      .........  .      +..-....++ .++ .++.+|. +.+ |+.+++.+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~-~~~~~g~~~~~-d~~tg~~~  196 (238)
T PF13360_consen  147 KYPVGEPRGSSPISSFSDINGSPVISDG-RVY-VSSGDGRVVAV-DLATGEKL  196 (238)
T ss_dssp             EEESSTT-SS--EEEETTEEEEEECCTT-EEE-EECCTSSEEEE-ETTTTEEE
T ss_pred             EeecCCCCCCcceeeecccccceEEECC-EEE-EEcCCCeEEEE-ECCCCCEE
Confidence            443322111  1      1222222344 344 4566664 555 99998854

...

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.42  E-value=0.00053  Score=56.16  Aligned_cols=247  Identities=15%  Similarity=0.144  Sum_probs=127.7

Q ss_pred             cccCCCcEEEEEEec-----CCCceEEEEEEeccCCCCCceEeeceeecCCcc--cceeeecCCccccCCCceEEecCC-
Q 018293            2 TINPNDAVIVCARNE-----DDVSHLEVYILEESDGGDPNLYVHHHIIIPAFP--LCMAWLDCPLKDREKGNFMAVGSM-   73 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~~g~~-   73 (358)
                      .++|+++.+.++..-     ...+.--|.+|+..+     +....+..+|..+  .++. .+...+++.||+++++... 
T Consensus        42 ~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-----L~~~~EI~iP~k~R~~~~~-~~~~~~ls~dgk~~~V~N~T  115 (342)
T PF06433_consen   42 ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-----LSPTGEIEIPPKPRAQVVP-YKNMFALSADGKFLYVQNFT  115 (342)
T ss_dssp             EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-----TEEEEEEEETTS-B--BS---GGGEEE-TTSSEEEEEEES
T ss_pred             eECCCCCEEEEEEEEEeccccccceeEEEEEecCc-----CcccceEecCCcchheecc-cccceEEccCCcEEEEEccC
Confidence            578999999886321     111233577788764     3334445555431  1111 1112334566666555432 


Q ss_pred             -CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEEC
Q 018293           74 -EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  152 (358)
Q Consensus        74 -dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  152 (358)
                       .-+|.|-|+...+.+..+.+                            .+   |.-.-|.+..-+.+-|.||.+.-..+
T Consensus       116 Pa~SVtVVDl~~~kvv~ei~~----------------------------PG---C~~iyP~~~~~F~~lC~DGsl~~v~L  164 (342)
T PF06433_consen  116 PATSVTVVDLAAKKVVGEIDT----------------------------PG---CWLIYPSGNRGFSMLCGDGSLLTVTL  164 (342)
T ss_dssp             SSEEEEEEETTTTEEEEEEEG----------------------------TS---EEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEECCCCceeeeecC----------------------------CC---EEEEEecCCCceEEEecCCceEEEEE
Confidence             23555666554333222211                            11   11122333446888899999999888


Q ss_pred             C-CCceeeee----ccccccee-eEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc-eee-----------ecCCeeeE
Q 018293          153 A-AGKCNLTL----EHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWA-----------VAADVESL  214 (358)
Q Consensus       153 ~-~~~~~~~~----~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~-----------~~~~i~~~  214 (358)
                      . .|+...+.    ....+++. .-++...+ ..++-.+.+|.|+--|+........ .+.           ..+.-.-+
T Consensus       165 d~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~  243 (342)
T PF06433_consen  165 DADGKEAQKSTKVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLI  243 (342)
T ss_dssp             TSTSSEEEEEEEESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-E
T ss_pred             CCCCCEeEeeccccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeee
Confidence            7 55543221    11122222 22333444 4455678889998888876542210 110           12334557


Q ss_pred             EEcCCCCCeEEEEe--c-----CC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe-CCCc
Q 018293          215 AWDPHAEHSFVVSL--E-----DG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKM  284 (358)
Q Consensus       215 ~~~~~~~~~~~~~~--~-----dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~  284 (358)
                      ++++..+.+++.-.  .     |+  .|-+||+.+.         +.+..+.. ..++.+|..+.+..-+|++.+ .++.
T Consensus       244 A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---------krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~  313 (342)
T PF06433_consen  244 AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---------KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT  313 (342)
T ss_dssp             EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---------EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE
T ss_pred             eeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---------eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe
Confidence            77774443333321  1     22  3667777776         66666654 246789999998755776554 5789


Q ss_pred             EEEEecCCCCce
Q 018293          285 VKLWDLSNNQPS  296 (358)
Q Consensus       285 i~i~d~~~~~~~  296 (358)
                      +.+||..+++..
T Consensus       314 l~v~D~~tGk~~  325 (342)
T PF06433_consen  314 LDVYDAATGKLV  325 (342)
T ss_dssp             EEEEETTT--EE
T ss_pred             EEEEeCcCCcEE
Confidence            999999999843

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.41  E-value=0.00013  Score=64.48  Aligned_cols=192  Identities=10%  Similarity=0.059  Sum_probs=113.0

Q ss_pred             cCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeC---C-CcEEEEEcccCCCcccee
Q 018293          130 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---D-RSVVMKDARISTHSGFKW  205 (358)
Q Consensus       130 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~~~~~~~~  205 (358)
                      +.|+|..+..+.-..+.+.+.|.++.+...++.-. .....+++++++ .++++.+.   . .++...+........ ..
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdG-k~afvTsyNsE~G~tl~em~a~e~d~~v-vf  276 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDG-KYAFSTCYNSEEGVTLAEMMAAERDWVV-VF  276 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCC-CEEEEeccCcccCcceeeeccccCceEE-EE
Confidence            45664333344445678889999988877777533 345678999998 56655542   2 223333322111000 00


Q ss_pred             eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcE
Q 018293          206 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  285 (358)
Q Consensus       206 ~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i  285 (358)
                      .. ..+  -++.+++. +...  .++.|.+.|.++.....    ......+. -......+.++|||..+++++..+.++
T Consensus       277 ni-~~i--ea~vkdGK-~~~V--~gn~V~VID~~t~~~~~----~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tV  345 (635)
T PRK02888        277 NI-ARI--EEAVKAGK-FKTI--GGSKVPVVDGRKAANAG----SALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTV  345 (635)
T ss_pred             ch-HHH--HHhhhCCC-EEEE--CCCEEEEEECCccccCC----cceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcE
Confidence            00 000  02233344 3333  36789999998710000    13333333 344568999999995566666679999


Q ss_pred             EEEecCCCCc----------eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          286 KLWDLSNNQP----------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       286 ~i~d~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      .|+|+.+.+.          ..+.+..--.+ -...+|.++|. .+.+-..|..|..||+..
T Consensus       346 SVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        346 TVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCC-EEEeEeecceeEEEehHH
Confidence            9999988552          11222222222 34578999997 688889999999999976

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=0.0003  Score=60.53  Aligned_cols=212  Identities=13%  Similarity=0.115  Sum_probs=138.5

Q ss_pred             cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEe--CCCcEEEEEcccCCCc
Q 018293          124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHS  201 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~  201 (358)
                      .-..++.++.+.+..+....++.|.+.|..+.+......... ....+++++++....++-.  .++.+.+.|..+.+..
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            345678888866677777777999999988777766665332 5678999999944444444  3688889888887776


Q ss_pred             cceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC
Q 018293          202 GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  281 (358)
Q Consensus       202 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~  281 (358)
                      .. .........++++|++...+++-..++.|.+.|........ .   ......... .....+.+.|++....++...
T Consensus       154 ~~-~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~---~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~  227 (381)
T COG3391         154 AT-IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G---SVGSLVGVG-TGPAGIAVDPDGNRVYVANDG  227 (381)
T ss_pred             EE-EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c---ccccccccC-CCCceEEECCCCCEEEEEecc
Confidence            64 33222338999999877666666689999999976542110 0   000012222 234678999999444444443


Q ss_pred             C--CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          282 D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       282 d--g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      +  +.+...|..++............ ....+..+|+|.++.+.-+..+.+.+-|..+......
T Consensus       228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            3  58999998887632221111111 4556899999997666556668899999887665543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.36  E-value=0.0011  Score=59.16  Aligned_cols=235  Identities=13%  Similarity=0.112  Sum_probs=127.7

Q ss_pred             ceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEE-EEecCCCCCcEEEEEE--
Q 018293           66 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL-GLAWNKEFRNILASAS--  142 (358)
Q Consensus        66 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~--  142 (358)
                      ..++.++.+|.|+-+|..+++..-........                      .....+. ...+..  + +++.++  
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~----------------------~~~~~i~ssP~v~~--~-~v~vg~~~  165 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQV----------------------PPGYTMTGAPTIVK--K-LVIIGSSG  165 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCc----------------------CcceEecCCCEEEC--C-EEEEeccc
Confidence            67888888999999999887765432211100                      0000010 111111  2 344443  


Q ss_pred             -------cCCeEEEEECCCCceeeeecccccc--------------------e-eeEEEcCCCCcEEEEEeCCC------
Q 018293          143 -------ADKQVKIWDVAAGKCNLTLEHHTDK--------------------V-QAVAWNHHSPQILLSGSFDR------  188 (358)
Q Consensus       143 -------~dg~v~iwd~~~~~~~~~~~~~~~~--------------------v-~~~~~~~~~~~~l~~~~~dg------  188 (358)
                             .+|.+..+|.++|+.+..++.....                    + ....+.+.+ ..++.++.++      
T Consensus       166 ~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~  244 (488)
T cd00216         166 AEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWG  244 (488)
T ss_pred             cccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccC
Confidence                   4688999999999988776532110                    0 122333344 5667776554      


Q ss_pred             ------------cEEEEEcccCCCccceeeecCCe------eeEEEc----CCC--CCeEEEEecCCeEEEEEcccCCCC
Q 018293          189 ------------SVVMKDARISTHSGFKWAVAADV------ESLAWD----PHA--EHSFVVSLEDGTIKGFDIRTAKSD  244 (358)
Q Consensus       189 ------------~i~i~d~~~~~~~~~~~~~~~~i------~~~~~~----~~~--~~~~~~~~~dg~i~i~d~~~~~~~  244 (358)
                                  .+.-+|..+++..-.........      ....+.    -++  ...+++++.+|.+..+|.+++   
T Consensus       245 ~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG---  321 (488)
T cd00216         245 GRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG---  321 (488)
T ss_pred             CccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC---
Confidence                        68888888887654221111100      000111    111  125778889999999999998   


Q ss_pred             CCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE------------------eCCCcEEEEecCCCCceeeEecCCCC-
Q 018293          245 PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG------------------STDKMVKLWDLSNNQPSCIASRNPKA-  305 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~~~~-  305 (358)
                            +.+......   ...+..+| +  .++.+                  ..+|.+.-.|+.+++..-......+. 
T Consensus       322 ------~~~W~~~~~---~~~~~~~~-~--~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~  389 (488)
T cd00216         322 ------KLISARPEV---EQPMAYDP-G--LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRD  389 (488)
T ss_pred             ------cEeeEeEee---ccccccCC-c--eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccc
Confidence                  444443221   11233333 2  22222                  23577888888888743222222111 


Q ss_pred             -----cee--EEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          306 -----GAV--FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       306 -----~~v--~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                           .+.  ..+..  .+. +++.++.||.|+.+|..+|+.+-+.
T Consensus       390 ~~~~g~~~~~~~~~~--~g~-~v~~g~~dG~l~ald~~tG~~lW~~  432 (488)
T cd00216         390 SWNIGFPHWGGSLAT--AGN-LVFAGAADGYFRAFDATTGKELWKF  432 (488)
T ss_pred             ccccCCcccCcceEe--cCC-eEEEECCCCeEEEEECCCCceeeEE
Confidence                 111  11222  334 4777889999999999999988653

The alignment model contains an 8-bladed beta-propeller.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.31  E-value=8.1e-06  Score=71.34  Aligned_cols=129  Identities=15%  Similarity=0.200  Sum_probs=93.5

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      +..+++++.|+.-|.+++|+-..+.....                          ...+..+.+..+..+++ ..++|.|
T Consensus        42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~--------------------------~~~~~~~~~~~~~vs~~-e~lvAag   94 (726)
T KOG3621|consen   42 DATEEYLAMGSSAGSVYLYNRHTGEMRKL--------------------------KNEGATGITCVRSVSSV-EYLVAAG   94 (726)
T ss_pred             ecCCceEEEecccceEEEEecCchhhhcc--------------------------cccCccceEEEEEecch-hHhhhhh
Confidence            56889999999999999999875443221                          11124456667778888 7799999


Q ss_pred             EcCCeEEEEECCCCceeee-----e-cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC----CccceeeecCCe
Q 018293          142 SADKQVKIWDVAAGKCNLT-----L-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST----HSGFKWAVAADV  211 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~-----~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i  211 (358)
                      +..|.|.++-+..+.+...     . +.|...|++++|++++ ..+++|...|.|.+-.+....    .........+.|
T Consensus        95 t~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~I  173 (726)
T KOG3621|consen   95 TASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEI  173 (726)
T ss_pred             cCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcce
Confidence            9999999998876432211     1 2478899999999999 889999999999998887621    112233456677


Q ss_pred             eeEEEcC
Q 018293          212 ESLAWDP  218 (358)
Q Consensus       212 ~~~~~~~  218 (358)
                      ..+....
T Consensus       174 VQlD~~q  180 (726)
T KOG3621|consen  174 VQLDYLQ  180 (726)
T ss_pred             EEeeccc
Confidence            7777654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.31  E-value=0.00081  Score=58.45  Aligned_cols=215  Identities=18%  Similarity=0.215  Sum_probs=106.6

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      |+++|+|+.+++. .++     +..+|.....     ..    ..........|       .+.++ +|+-...+.|.|+
T Consensus        38 ls~npngr~v~V~-g~g-----eY~iyt~~~~-----r~----k~~G~g~~~vw-------~~~n~-yAv~~~~~~I~I~   94 (443)
T PF04053_consen   38 LSHNPNGRFVLVC-GDG-----EYEIYTALAW-----RN----KAFGSGLSFVW-------SSRNR-YAVLESSSTIKIY   94 (443)
T ss_dssp             EEE-TTSSEEEEE-ETT-----EEEEEETTTT-----EE----EEEEE-SEEEE--------TSSE-EEEE-TTS-EEEE
T ss_pred             EEECCCCCEEEEE-cCC-----EEEEEEccCC-----cc----cccCceeEEEE-------ecCcc-EEEEECCCeEEEE
Confidence            4689999999994 555     6666664331     00    01122224445       55444 6666668889996


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      .--........                         .   -...+..|-.    +.+|+..+. +.|.+||+++++.+++
T Consensus        95 kn~~~~~~k~i-------------------------~---~~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~~~i~~  141 (443)
T PF04053_consen   95 KNFKNEVVKSI-------------------------K---LPFSVEKIFG----GNLLGVKSS-DFICFYDWETGKLIRR  141 (443)
T ss_dssp             ETTEE-TT---------------------------------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EEEE
T ss_pred             EcCccccceEE-------------------------c---CCcccceEEc----CcEEEEECC-CCEEEEEhhHcceeeE
Confidence            32221111100                         0   1112333322    345555544 4899999999999999


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC-----------CCccceeeecCCeeeEEEcCCCCCeEEEEec
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-----------THSGFKWAVAADVESLAWDPHAEHSFVVSLE  229 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  229 (358)
                      +...  +|..+.|++++ .+++..+.+ .+.+++....           ............|.+..|..+   .++-.+.
T Consensus       142 i~v~--~vk~V~Ws~~g-~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d---~fiYtT~  214 (443)
T PF04053_consen  142 IDVS--AVKYVIWSDDG-ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED---CFIYTTS  214 (443)
T ss_dssp             ESS---E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT---EEEEE-T
T ss_pred             EecC--CCcEEEEECCC-CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC---EEEEEcC
Confidence            9743  48999999998 677766644 6677665433           011222233678999999863   4554444


Q ss_pred             CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293          230 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  292 (358)
Q Consensus       230 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~  292 (358)
                      . .++.  +..+          ....+..-..++.=+...|.. +.++....|+.+..+.+..
T Consensus       215 ~-~lkY--l~~G----------e~~~i~~ld~~~yllgy~~~~-~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  215 N-HLKY--LVNG----------ETGIIAHLDKPLYLLGYLPKE-NRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             T-EEEE--EETT----------EEEEEEE-SS--EEEEEETTT-TEEEEE-TT--EEEEE--H
T ss_pred             C-eEEE--EEcC----------CcceEEEcCCceEEEEEEccC-CEEEEEECCCCEEEEEECH
Confidence            4 6665  4433          222333335566667777755 6777777888888776643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.28  E-value=0.0002  Score=65.75  Aligned_cols=141  Identities=17%  Similarity=0.178  Sum_probs=96.4

Q ss_pred             CcEEEEE-EcCCeEEEEECCCCceeeeecccccc-eeeEEEcCCC------CcEEEEEeCCCcEEEEEcccCCCcc----
Q 018293          135 RNILASA-SADKQVKIWDVAAGKCNLTLEHHTDK-VQAVAWNHHS------PQILLSGSFDRSVVMKDARISTHSG----  202 (358)
Q Consensus       135 ~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~----  202 (358)
                      .++|+.- .....|.-.|++.|+.+..+..+... |..+  .|+.      +...+.|-.+..+..||.|......    
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~  570 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ  570 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence            4444443 34578999999999999999877654 4444  3421      1345677788999999999654211    


Q ss_pred             -ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC
Q 018293          203 -FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  281 (358)
Q Consensus       203 -~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~  281 (358)
                       .........+|++-..+  ..+|+|+.+|.|++||--..         .....+.+-..+|..|..+.|| ++|++.+ 
T Consensus       571 ~k~Y~~~~~Fs~~aTt~~--G~iavgs~~G~IRLyd~~g~---------~AKT~lp~lG~pI~~iDvt~DG-kwilaTc-  637 (794)
T PF08553_consen  571 SKQYSSKNNFSCFATTED--GYIAVGSNKGDIRLYDRLGK---------RAKTALPGLGDPIIGIDVTADG-KWILATC-  637 (794)
T ss_pred             ccccccCCCceEEEecCC--ceEEEEeCCCcEEeecccch---------hhhhcCCCCCCCeeEEEecCCC-cEEEEee-
Confidence             11223445777777653  48999999999999994321         3344556667899999999999 6666555 


Q ss_pred             CCcEEEEec
Q 018293          282 DKMVKLWDL  290 (358)
Q Consensus       282 dg~i~i~d~  290 (358)
                      +..+.+++.
T Consensus       638 ~tyLlLi~t  646 (794)
T PF08553_consen  638 KTYLLLIDT  646 (794)
T ss_pred             cceEEEEEE
Confidence            456777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=98.24  E-value=0.0023  Score=54.76  Aligned_cols=90  Identities=17%  Similarity=0.141  Sum_probs=57.8

Q ss_pred             EEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCce----eEEEEEc--------------C
Q 018293          254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA----VFSVAFS--------------E  315 (358)
Q Consensus       254 ~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----v~~~~~~--------------~  315 (358)
                      ..+......+.+++.+|.+ .+.++...=|.|.++|+..+...  ...++....    +....-.              .
T Consensus       301 ~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vv--rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~  377 (415)
T PF14655_consen  301 FGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVV--RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSR  377 (415)
T ss_pred             EeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhh--hhhccCccceEEEEEeecccccccccccccCCCCc
Confidence            3444455678999999997 78888777799999999887632  222222111    1110000              0


Q ss_pred             CCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293          316 DSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       316 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                      ...++++-+-.-|.|.||.+++|..+..+..
T Consensus       378 ~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  378 FALFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             ceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            1234555567789999999999998875443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.24  E-value=0.0007  Score=58.81  Aligned_cols=225  Identities=15%  Similarity=0.168  Sum_probs=110.8

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      ++.++|+|+++++++ ||...||.....+.                                ...+.-....|.+. + .
T Consensus        37 ~ls~npngr~v~V~g-~geY~iyt~~~~r~--------------------------------k~~G~g~~~vw~~~-n-~   81 (443)
T PF04053_consen   37 SLSHNPNGRFVLVCG-DGEYEIYTALAWRN--------------------------------KAFGSGLSFVWSSR-N-R   81 (443)
T ss_dssp             EEEE-TTSSEEEEEE-TTEEEEEETTTTEE--------------------------------EEEEE-SEEEE-TS-S-E
T ss_pred             eEEECCCCCEEEEEc-CCEEEEEEccCCcc--------------------------------cccCceeEEEEecC-c-c
Confidence            445599999999955 78888888432111                                12344556788885 3 5


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  217 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  217 (358)
                      +|+-..+++|.++.--+.+....++. ...+..+-.   | .+|...+.+ .|.+||+.+.+.+.... . .+|..+.|+
T Consensus        82 yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i~~i~-v-~~vk~V~Ws  153 (443)
T PF04053_consen   82 YAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLIRRID-V-SAVKYVIWS  153 (443)
T ss_dssp             EEEE-TTS-EEEEETTEE-TT------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EEEEES-S--E-EEEEE-
T ss_pred             EEEEECCCeEEEEEcCccccceEEcC-CcccceEEc---C-cEEEEECCC-CEEEEEhhHcceeeEEe-c-CCCcEEEEE
Confidence            77777788999974222333233432 122333332   5 666666544 89999999887655222 2 238999999


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCC--CCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAK--SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      +++. +++..+.+ .+.+++.....  .............+..-...|.+.+|..+  -+++|.. . .++-  +..++.
T Consensus       154 ~~g~-~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~-~-~lkY--l~~Ge~  225 (443)
T PF04053_consen  154 DDGE-LVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS-N-HLKY--LVNGET  225 (443)
T ss_dssp             TTSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T-T-EEEE--EETTEE
T ss_pred             CCCC-EEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC-C-eEEE--EEcCCc
Confidence            9654 66666544 56666654320  00000000133334333677899999864  3444433 3 6665  555553


Q ss_pred             eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          296 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       296 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ..+..+   ..++.=+...+... .+.....|+.+..+.+..
T Consensus       226 ~~i~~l---d~~~yllgy~~~~~-~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  226 GIIAHL---DKPLYLLGYLPKEN-RLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             EEEEE----SS--EEEEEETTTT-EEEEE-TT--EEEEE--H
T ss_pred             ceEEEc---CCceEEEEEEccCC-EEEEEECCCCEEEEEECH
Confidence            333333   34566677777555 466778888888887754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.22  E-value=6.3e-05  Score=68.89  Aligned_cols=144  Identities=16%  Similarity=0.223  Sum_probs=98.1

Q ss_pred             cEEEEE-eCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC------CCCeEEEEecCCeEEEEEcccCCCCCCCCCCC
Q 018293          179 QILLSG-SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ  251 (358)
Q Consensus       179 ~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~  251 (358)
                      .+|+.. .....|+-.|++.++.+. .+.....+.-..+.|+      .+...++|-.++.+..||.|-...       +
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~-eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-------k  565 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVE-EWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-------K  565 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEE-EeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-------c
Confidence            444433 345788889999888776 3443333334444442      123567788889999999996521       1


Q ss_pred             ccE---EEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC
Q 018293          252 SSF---TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG  328 (358)
Q Consensus       252 ~~~---~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  328 (358)
                      .+.   .........+|++-+.+|  +||+|+.+|.||+||--..+  ....+.+-..+|..|..+.||+++|||+  +.
T Consensus       566 ~v~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc--~t  639 (794)
T PF08553_consen  566 LVDSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKR--AKTALPGLGDPIIGIDVTADGKWILATC--KT  639 (794)
T ss_pred             eeeccccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchh--hhhcCCCCCCCeeEEEecCCCcEEEEee--cc
Confidence            111   011234567888877765  89999999999999954322  4555667788999999999999988776  46


Q ss_pred             eEEEEEcc
Q 018293          329 KLEIWDTL  336 (358)
Q Consensus       329 ~i~vw~~~  336 (358)
                      .|.+++..
T Consensus       640 yLlLi~t~  647 (794)
T PF08553_consen  640 YLLLIDTL  647 (794)
T ss_pred             eEEEEEEe
Confidence            88888874

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=0.00028  Score=60.21  Aligned_cols=144  Identities=18%  Similarity=0.250  Sum_probs=100.6

Q ss_pred             cEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCC------CeEEEEecCCeEEEEEcccCCCCCCCCCCCc
Q 018293          179 QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQS  252 (358)
Q Consensus       179 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~  252 (358)
                      -++.++.....++-.|++.++.+. .+.....|+.+.+.|+..      ..-++|-.+..|.-||.|-...       ..
T Consensus       347 lil~~~~~~~~l~klDIE~GKIVe-EWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-------~k  418 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGKIVE-EWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-------NK  418 (644)
T ss_pred             eEeeCCCCcCcceeeecccceeee-EeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc-------ce
Confidence            345556666778888998888776 566666688888887532      1235577889999999995422       12


Q ss_pred             cEEEeec----CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC
Q 018293          253 SFTLHAH----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG  328 (358)
Q Consensus       253 ~~~~~~~----~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  328 (358)
                      +.....|    .....|.+-..+|  ++++|+.+|.|++||.-..+  ....+++...+|..+..+.+|.++|+|+  +.
T Consensus       419 l~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~--AKTAlPgLG~~I~hVdvtadGKwil~Tc--~t  492 (644)
T KOG2395|consen  419 LAVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRR--AKTALPGLGDAIKHVDVTADGKWILATC--KT  492 (644)
T ss_pred             eeeeeccccccccccceeeecCCc--eEEEeecCCcEEeehhhhhh--hhhcccccCCceeeEEeeccCcEEEEec--cc
Confidence            2222233    2345666666554  89999999999999984333  4556778888999999999999877655  56


Q ss_pred             eEEEEEcc
Q 018293          329 KLEIWDTL  336 (358)
Q Consensus       329 ~i~vw~~~  336 (358)
                      .+.+-++.
T Consensus       493 yLlLi~t~  500 (644)
T KOG2395|consen  493 YLLLIDTL  500 (644)
T ss_pred             EEEEEEEe
Confidence            77777764

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.19  E-value=0.0036  Score=54.86  Aligned_cols=248  Identities=13%  Similarity=0.160  Sum_probs=125.7

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC-------
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-------   74 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-------   74 (358)
                      .++|+++.++.+-..+......+++++...+   ..... ..... ....+.|       .++++.|+....+       
T Consensus       130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~d-~i~~~-~~~~~~W-------~~d~~~~~y~~~~~~~~~~~  197 (414)
T PF02897_consen  130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLPD-GIENP-KFSSVSW-------SDDGKGFFYTRFDEDQRTSD  197 (414)
T ss_dssp             EETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEEE-EEEEE-ESEEEEE-------CTTSSEEEEEECSTTTSS-C
T ss_pred             eECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcCC-ccccc-ccceEEE-------eCCCCEEEEEEeCccccccc
Confidence            5899999999997776556678999999876   22211 11111 1112556       6787766544322       


Q ss_pred             ----CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCC---eE
Q 018293           75 ----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK---QV  147 (358)
Q Consensus        75 ----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg---~v  147 (358)
                          ..|+.|++.+.......                       +.....+......+..++++..+++......   .+
T Consensus       198 ~~~~~~v~~~~~gt~~~~d~l-----------------------vfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v  254 (414)
T PF02897_consen  198 SGYPRQVYRHKLGTPQSEDEL-----------------------VFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEV  254 (414)
T ss_dssp             CGCCEEEEEEETTS-GGG-EE-----------------------EEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEE
T ss_pred             CCCCcEEEEEECCCChHhCee-----------------------EEeecCCCcEEEEEEecCcccEEEEEEEccccCCeE
Confidence                23677777543322111                       1111112222567888999554444444333   47


Q ss_pred             EEEECCCC----ceeeeecccccce-eeEEEcCCCCcEEEEEeC---CCcEEEEEcccCCCcc---ceeeecC--CeeeE
Q 018293          148 KIWDVAAG----KCNLTLEHHTDKV-QAVAWNHHSPQILLSGSF---DRSVVMKDARISTHSG---FKWAVAA--DVESL  214 (358)
Q Consensus       148 ~iwd~~~~----~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~---~~~~~~~--~i~~~  214 (358)
                      .+.++..+    .....+......+ ..+... .+ .+++....   .+.|...++.......   ....+..  .+..+
T Consensus       255 ~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~  332 (414)
T PF02897_consen  255 YLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDV  332 (414)
T ss_dssp             EEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEE
T ss_pred             EEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEE
Confidence            78888764    2233333233333 333333 33 44444432   4567777777665311   2333333  34445


Q ss_pred             EEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEe-ecCCceeEEEecCCCCcEEEEEeC---CCcEEEE
Q 018293          215 AWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYNPLVPNLLATGST---DKMVKLW  288 (358)
Q Consensus       215 ~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~---dg~i~i~  288 (358)
                      ...  ++.+++....++  .|+++++..+         .....+. .-.+.|..+...+++..+.++.+.   -+++..|
T Consensus       333 ~~~--~~~Lvl~~~~~~~~~l~v~~~~~~---------~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~  401 (414)
T PF02897_consen  333 SLF--KDYLVLSYRENGSSRLRVYDLDDG---------KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRY  401 (414)
T ss_dssp             EEE--TTEEEEEEEETTEEEEEEEETT-T---------EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEE
T ss_pred             EEE--CCEEEEEEEECCccEEEEEECCCC---------cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEE
Confidence            443  444666666665  5788888722         2222222 223446666666666455554433   2458888


Q ss_pred             ecCCCCcee
Q 018293          289 DLSNNQPSC  297 (358)
Q Consensus       289 d~~~~~~~~  297 (358)
                      |+.+++...
T Consensus       402 d~~t~~~~~  410 (414)
T PF02897_consen  402 DLATGELTL  410 (414)
T ss_dssp             ETTTTCEEE
T ss_pred             ECCCCCEEE
Confidence            988887433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.18  E-value=0.00016  Score=48.58  Aligned_cols=99  Identities=15%  Similarity=0.196  Sum_probs=68.3

Q ss_pred             EecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee
Q 018293          128 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV  207 (358)
Q Consensus       128 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  207 (358)
                      +.|..+|.+.|++|+.|..|++|+-  .+.+.++.. .+.|+++.-...  ..|+.+..+|+|-+|+-....   .....
T Consensus         8 ~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~Rl---WRiKS   79 (111)
T PF14783_consen    8 FDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG--GRFAYALANGTVGVYDRSQRL---WRIKS   79 (111)
T ss_pred             EecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC--CEEEEEecCCEEEEEeCccee---eeecc
Confidence            3455666789999999999999973  366777764 466777777665  468999999999999763221   11123


Q ss_pred             cCCeeeEEEc---CCCCCeEEEEecCCeEE
Q 018293          208 AADVESLAWD---PHAEHSFVVSLEDGTIK  234 (358)
Q Consensus       208 ~~~i~~~~~~---~~~~~~~~~~~~dg~i~  234 (358)
                      ...+.++.+.   .++...+++|-.+|.|-
T Consensus        80 K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   80 KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            3345555543   33445799998898874

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.17  E-value=0.0025  Score=54.37  Aligned_cols=201  Identities=17%  Similarity=0.181  Sum_probs=105.8

Q ss_pred             cccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeec-c-------c---------ccceeeEEEcCCCCcEEEEE
Q 018293          122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-H-------H---------TDKVQAVAWNHHSPQILLSG  184 (358)
Q Consensus       122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~-------~---------~~~v~~~~~~~~~~~~l~~~  184 (358)
                      ...+....|+|+ ++.++-. .++.|.+++..+++..+... +       -         -+.-..+.|+|++ +.|+..
T Consensus        42 ~~~~~~~~~sP~-g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~  118 (353)
T PF00930_consen   42 PPKLQDAKWSPD-GKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFL  118 (353)
T ss_dssp             ETTBSEEEE-SS-STEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEE
T ss_pred             ccccccceeecC-CCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCC-CEEEEE
Confidence            467888999999 5566655 46889999987775433221 1       0         1123578899999 555544


Q ss_pred             e-CCCcE-----------------------------------EEEEcccCCCcccee-----eecCCeeeEEEcCCCCCe
Q 018293          185 S-FDRSV-----------------------------------VMKDARISTHSGFKW-----AVAADVESLAWDPHAEHS  223 (358)
Q Consensus       185 ~-~dg~i-----------------------------------~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~  223 (358)
                      . .+..+                                   .++|+.+++......     .....+..+.|.+++..+
T Consensus       119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l  198 (353)
T PF00930_consen  119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL  198 (353)
T ss_dssp             EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred             EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence            3 33322                                   233443333221111     112346778888865423


Q ss_pred             EEE-EecCC---eEEEEEcccCCCCCCCCCCCccEEEeecCCce---eEEEec-CCCCcEEEEEeCCCcEE--EEecCCC
Q 018293          224 FVV-SLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV---CTISYN-PLVPNLLATGSTDKMVK--LWDLSNN  293 (358)
Q Consensus       224 ~~~-~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i---~~i~~~-~~~~~~l~~~~~dg~i~--i~d~~~~  293 (358)
                      ++. ...+.   .+.++|..++..       +.+. .......|   ....+. +++..++.....||.-+  +++...+
T Consensus       199 ~~~~~nR~q~~~~l~~~d~~tg~~-------~~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~  270 (353)
T PF00930_consen  199 WVQWLNRDQNRLDLVLCDASTGET-------RVVL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG  270 (353)
T ss_dssp             EEEEEETTSTEEEEEEEEECTTTC-------EEEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS
T ss_pred             EEEEcccCCCEEEEEEEECCCCce-------eEEE-EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc
Confidence            333 22222   355666665421       1111 22222222   345554 77767777777888744  4555555


Q ss_pred             CceeeEecCCCCceeEE-EEEcCCCCeEEEEEccCC----eEEEEEcc
Q 018293          294 QPSCIASRNPKAGAVFS-VAFSEDSPFVLAIGGSKG----KLEIWDTL  336 (358)
Q Consensus       294 ~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg----~i~vw~~~  336 (358)
                      .   ...+....-.|.. +.++++++.++.++..++    .|+.-++.
T Consensus       271 ~---~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~  315 (353)
T PF00930_consen  271 K---PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD  315 (353)
T ss_dssp             E---EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred             c---eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence            4   3344444555644 788898887777777633    45555555

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.15  E-value=0.0004  Score=61.59  Aligned_cols=197  Identities=9%  Similarity=0.004  Sum_probs=114.2

Q ss_pred             CccccCCCceEEe-cCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCc
Q 018293           58 PLKDREKGNFMAV-GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  136 (358)
Q Consensus        58 ~~~~s~~~~~l~~-g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  136 (358)
                      .+-++|||+.+.. .-..+.+.+.|.++.+......+                            .+....++++|++ .
T Consensus       197 ~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V----------------------------dgnpd~v~~spdG-k  247 (635)
T PRK02888        197 RIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV----------------------------DGNLDNVDTDYDG-K  247 (635)
T ss_pred             ccccCCCCCEeecccceeEEEEEEECccceEEEEEEe----------------------------CCCcccceECCCC-C
Confidence            3445778876643 33457788888775443332221                            1233556788884 4


Q ss_pred             EEEEEEcC----CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc----CCCccceeeec
Q 018293          137 ILASASAD----KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI----STHSGFKWAVA  208 (358)
Q Consensus       137 ~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~  208 (358)
                      ++++.+.+    +++..-+..+...+..+.-  ..+  -++.++| ++...  .++.|.+.|.++    ...........
T Consensus       248 ~afvTsyNsE~G~tl~em~a~e~d~~vvfni--~~i--ea~vkdG-K~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG  320 (635)
T PRK02888        248 YAFSTCYNSEEGVTLAEMMAAERDWVVVFNI--ARI--EEAVKAG-KFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP  320 (635)
T ss_pred             EEEEeccCcccCcceeeeccccCceEEEEch--HHH--HHhhhCC-CEEEE--CCCEEEEEECCccccCCcceEEEEECC
Confidence            66555432    2233322222211111110  000  0234566 44443  367899999987    33344455677


Q ss_pred             CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC--C-CCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcE
Q 018293          209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD--S-TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  285 (358)
Q Consensus       209 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~--~-~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i  285 (358)
                      .....+.++|++...++++..++++.++|+.+.+....  . .............++ ...+|.++| +...+-.-|..|
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G-~aytslf~dsqv  398 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRG-NAYTTLFLDSQI  398 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCC-CEEEeEeeccee
Confidence            78899999998887777788899999999988632100  0 000112222222333 567889887 777788889999


Q ss_pred             EEEecCC
Q 018293          286 KLWDLSN  292 (358)
Q Consensus       286 ~i~d~~~  292 (358)
                      ..|++..
T Consensus       399 ~kwn~~~  405 (635)
T PRK02888        399 VKWNIEA  405 (635)
T ss_pred             EEEehHH
Confidence            9999876

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.13  E-value=0.0046  Score=53.71  Aligned_cols=174  Identities=10%  Similarity=0.125  Sum_probs=89.4

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee-------cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEc
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA  195 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  195 (358)
                      +.|-++.|+.+ . .|+.-..||.+++||+. |+....+       .-....+....+...|   ++.-..++.+.+.+-
T Consensus        81 ~~iv~~~wt~~-e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G---ivvLt~~~~~~~v~n  154 (410)
T PF04841_consen   81 GRIVGMGWTDD-E-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG---IVVLTGNNRFYVVNN  154 (410)
T ss_pred             CCEEEEEECCC-C-eEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC---EEEECCCCeEEEEeC
Confidence            78999999886 4 56677899999999986 3331111       1111222222333344   333344555544432


Q ss_pred             ccCC-CccceeeecCC---------eee-EEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCcee
Q 018293          196 RIST-HSGFKWAVAAD---------VES-LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC  264 (358)
Q Consensus       196 ~~~~-~~~~~~~~~~~---------i~~-~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~  264 (358)
                      .... ...........         ... ..++.+. ...+....++.+.+.+-...            ..+. ..+++.
T Consensus       155 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~------------~~i~-~~~~i~  220 (410)
T PF04841_consen  155 IDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSF------------KQID-SDGPII  220 (410)
T ss_pred             ccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccc------------cccc-CCCCeE
Confidence            2211 10100010000         000 1233322 23333334455554333221            0111 246899


Q ss_pred             EEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCC
Q 018293          265 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP  318 (358)
Q Consensus       265 ~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  318 (358)
                      .+++||++ ++++.-..+|.+.+.+..-.+..+..... .......|.|..+..
T Consensus       221 ~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  221 KIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGNDA  272 (410)
T ss_pred             EEEECCCC-CEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECCCc
Confidence            99999998 88998899999999887655533333322 234556777776553

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.12  E-value=0.003  Score=53.22  Aligned_cols=229  Identities=10%  Similarity=0.070  Sum_probs=121.1

Q ss_pred             EEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccC----CCceEEecCC----------CCeEEEEEcccc-cC
Q 018293           23 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE----KGNFMAVGSM----------EPAIEIWDLDVI-DE   87 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~~~~l~~g~~----------dg~i~vw~~~~~-~~   87 (358)
                      .+.+++....   .....+.......+.++.-+.+    ..    ...++++|+.          .|.|.++++... ..
T Consensus         3 ~i~l~d~~~~---~~~~~~~l~~~E~~~s~~~~~l----~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~   75 (321)
T PF03178_consen    3 SIRLVDPTTF---EVLDSFELEPNEHVTSLCSVKL----KGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN   75 (321)
T ss_dssp             EEEEEETTTS---SEEEEEEEETTEEEEEEEEEEE----TTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---
T ss_pred             EEEEEeCCCC---eEEEEEECCCCceEEEEEEEEE----cCccccccCEEEEEecccccccccccCcEEEEEEEEccccc
Confidence            4555665543   2333333333444445544332    22    2567887753          288999999753 00


Q ss_pred             cCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc-eeeeecc-cc
Q 018293           88 VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTLEH-HT  165 (358)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~-~~  165 (358)
                      .                     .+.+.... ....++|++++--.  + .|+++ .++.|.+|++...+ ....-.. ..
T Consensus        76 ~---------------------~~l~~i~~-~~~~g~V~ai~~~~--~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~  129 (321)
T PF03178_consen   76 N---------------------FKLKLIHS-TEVKGPVTAICSFN--G-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSP  129 (321)
T ss_dssp             -----------------------EEEEEEE-EEESS-EEEEEEET--T-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BS
T ss_pred             c---------------------eEEEEEEE-EeecCcceEhhhhC--C-EEEEe-ecCEEEEEEccCcccchhhheecce
Confidence            0                     11111111 13467899988663  3 34443 35889999998777 3332221 22


Q ss_pred             cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC-ccceee--ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCC
Q 018293          166 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK  242 (358)
Q Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~  242 (358)
                      ..+.++...  + ++++.|.....+.++..+.... ......  ....++++.+-+++ ..++++..+|.+.++......
T Consensus       130 ~~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~  205 (321)
T PF03178_consen  130 FYITSLSVF--K-NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEI  205 (321)
T ss_dssp             SSEEEEEEE--T-TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-
T ss_pred             EEEEEEecc--c-cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCC
Confidence            355555554  4 5899999888888886554222 221222  23457888888655 489999999999999987432


Q ss_pred             CCCCCCCCCccEEEee-cCCceeEE---EecC--CCC-----cEEEEEeCCCcEEEE
Q 018293          243 SDPDSTSQQSSFTLHA-HDKAVCTI---SYNP--LVP-----NLLATGSTDKMVKLW  288 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~~-~~~~i~~i---~~~~--~~~-----~~l~~~~~dg~i~i~  288 (358)
                      ...............- ....|+++   .+.|  .+.     ..++.++.+|.|.+.
T Consensus       206 ~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  206 PNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             cccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            2111110011111122 24557777   5555  221     247778889998843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=2e-05  Score=68.13  Aligned_cols=94  Identities=16%  Similarity=0.320  Sum_probs=80.0

Q ss_pred             cccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeeccccccee-eEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293          122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTH  200 (358)
Q Consensus       122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  200 (358)
                      ...|.-+.|+|. ..++|.+..+|.|.+..+. .+.+.++.-+...++ +++|.||| +.++.|-.||+|++.|+.++..
T Consensus        20 ~~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   20 PINIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ccceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCc
Confidence            456888999999 7799999999999999988 777888887777777 99999998 9999999999999999998876


Q ss_pred             ccc-eeeecCCeeeEEEcC
Q 018293          201 SGF-KWAVAADVESLAWDP  218 (358)
Q Consensus       201 ~~~-~~~~~~~i~~~~~~~  218 (358)
                      ... ......+|.++.|.+
T Consensus        97 l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eeccccccccchheeeccc
Confidence            542 244567788888875

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=0.0027  Score=54.67  Aligned_cols=208  Identities=18%  Similarity=0.168  Sum_probs=132.3

Q ss_pred             cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc
Q 018293          124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  203 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  203 (358)
                      ....+...+++.+..++-.....+...+...................+..++.+.+.++....++.|.+.|....+... 
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~-  110 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG-  110 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee-
Confidence            4456667777544444444444566655552222221221113446788888886677777778999999976655544 


Q ss_pred             eeeecCCeeeEEEcCCCCCeEEEEe--cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC
Q 018293          204 KWAVAADVESLAWDPHAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  281 (358)
Q Consensus       204 ~~~~~~~i~~~~~~~~~~~~~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~  281 (358)
                      ..........++++|+++...++-.  .++.+.+.|..+.         ...........+ ..+++.|++...+++-..
T Consensus       111 ~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---------~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~  180 (381)
T COG3391         111 SIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---------KVTATIPVGNTP-TGVAVDPDGNKVYVTNSD  180 (381)
T ss_pred             EeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC---------eEEEEEecCCCc-ceEEECCCCCeEEEEecC
Confidence            2333347788999997776666555  3688888888876         444444433344 889999999545556667


Q ss_pred             CCcEEEEecCCCCceeeEe---cCCCCceeEEEEEcCCCCeEEEEEccC--CeEEEEEccCCCcccc
Q 018293          282 DKMVKLWDLSNNQPSCIAS---RNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLSDAGISN  343 (358)
Q Consensus       282 dg~i~i~d~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vw~~~~~~~~~~  343 (358)
                      ++.|.+.|........ ..   ...-...-..+.++|+|.++.++...+  +.+...|..++.....
T Consensus       181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence            8999999977765221 11   011122345689999999766666555  6899999888776554

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.06  E-value=0.002  Score=54.32  Aligned_cols=176  Identities=13%  Similarity=0.157  Sum_probs=108.0

Q ss_pred             CeEEEEECCCCceeeeeccc-ccceeeE---EEcCC---CCcEEEEEeC----------CCcEEEEEcccC----CCcc-
Q 018293          145 KQVKIWDVAAGKCNLTLEHH-TDKVQAV---AWNHH---SPQILLSGSF----------DRSVVMKDARIS----THSG-  202 (358)
Q Consensus       145 g~v~iwd~~~~~~~~~~~~~-~~~v~~~---~~~~~---~~~~l~~~~~----------dg~i~i~d~~~~----~~~~-  202 (358)
                      ..|++.|..+.+.+..+.-. ...+.++   .+..+   ...++++|+.          .|.|.++++...    .... 
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            36888998888776655422 2334443   44432   1367777753          289999999884    1111 


Q ss_pred             -ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec--CCceeEEEecCCCCcEEEEE
Q 018293          203 -FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATG  279 (358)
Q Consensus       203 -~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~~l~~~  279 (358)
                       ......++|++++-..  + .++++ .++.|.+|++...         ..+.....+  ...+.++...  + +++++|
T Consensus        82 i~~~~~~g~V~ai~~~~--~-~lv~~-~g~~l~v~~l~~~---------~~l~~~~~~~~~~~i~sl~~~--~-~~I~vg  145 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSFN--G-RLVVA-VGNKLYVYDLDNS---------KTLLKKAFYDSPFYITSLSVF--K-NYILVG  145 (321)
T ss_dssp             EEEEEESS-EEEEEEET--T-EEEEE-ETTEEEEEEEETT---------SSEEEEEEE-BSSSEEEEEEE--T-TEEEEE
T ss_pred             EEEEeecCcceEhhhhC--C-EEEEe-ecCEEEEEEccCc---------ccchhhheecceEEEEEEecc--c-cEEEEE
Confidence             2334578888888663  3 34444 4589999999987         312222222  3356666665  3 689999


Q ss_pred             eCCCcEEEEecCCCC-ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          280 STDKMVKLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       280 ~~dg~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      .....+.++..+... .............++++.|.+++. .++.+..+|.+.++....
T Consensus       146 D~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  146 DAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             ESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-S
T ss_pred             EcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECC
Confidence            988888887554422 122223333456789999987776 578899999999998863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.01  E-value=0.0037  Score=54.28  Aligned_cols=181  Identities=12%  Similarity=0.090  Sum_probs=93.7

Q ss_pred             eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee---ecCCe-----eeEEEc
Q 018293          146 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAADV-----ESLAWD  217 (358)
Q Consensus       146 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i-----~~~~~~  217 (358)
                      .|++|+. .|+++..+.-..+.+.++.|..+.  .|++...||.++++|+....  .....   ....|     ....+.
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~  136 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFY  136 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccC
Confidence            5999984 567777765445889999998864  57777899999999986443  11111   11122     122222


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCC-CCC-CCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSD-PDS-TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~-~~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      . ++  ++.-+.++.+.+..-...... ... ...........+........++.+. ...+....++.+.+.+-...+.
T Consensus       137 ~-~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~~  212 (410)
T PF04841_consen  137 K-NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFKQ  212 (410)
T ss_pred             C-CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccccc
Confidence            1 22  333344555544322221100 000 0000000011111110012233333 3444444455566444332211


Q ss_pred             eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          296 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       296 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                           .. ..+++..|+.||+|++ +|.-..+|.+.+....-.+.+.
T Consensus       213 -----i~-~~~~i~~iavSpng~~-iAl~t~~g~l~v~ssDf~~~~~  252 (410)
T PF04841_consen  213 -----ID-SDGPIIKIAVSPNGKF-IALFTDSGNLWVVSSDFSEKLC  252 (410)
T ss_pred             -----cc-CCCCeEEEEECCCCCE-EEEEECCCCEEEEECcccceeE
Confidence                 11 2468999999999995 7888888999888765444443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.98  E-value=0.0006  Score=54.17  Aligned_cols=176  Identities=11%  Similarity=0.121  Sum_probs=96.8

Q ss_pred             eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce-eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  238 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~  238 (358)
                      .+.+-...+..++|.|+.+.++++....+.|..++.. ++.+... ....+....+++.. ++.++++.-.++.+.++++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence            3445556699999999876788888888888888864 3433322 22245688888875 3434444445899999999


Q ss_pred             ccCCCCCCCCCCCccEEE-----eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC---CCceeeEe------cCCC
Q 018293          239 RTAKSDPDSTSQQSSFTL-----HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN---NQPSCIAS------RNPK  304 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~------~~~~  304 (358)
                      ........   ......+     ..+...+-.++|.|.+ +.|+.+-+..-..+|.+..   ........      ....
T Consensus        94 ~~~~~~~~---~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   94 DDDTTSLD---RADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             ----TT-----EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             eccccccc---hhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence            55421100   0111111     1244568999999987 4555556666677777654   11111111      1223


Q ss_pred             CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          305 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       305 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      ...+.+++++|....+++.+..+..|..+| .+|+.+.
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~  206 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVS  206 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEE
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEE
Confidence            345889999998777888888999999999 5556444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.96  E-value=0.0078  Score=50.52  Aligned_cols=281  Identities=16%  Similarity=0.138  Sum_probs=129.2

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      .|.++|+.|+.++..+  +.-++|..+...+....+-....  -..+-.+         .+++++.++-......|+--|
T Consensus        42 ~ft~dG~kllF~s~~d--g~~nly~lDL~t~~i~QLTdg~g--~~~~g~~---------~s~~~~~~~Yv~~~~~l~~vd  108 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFD--GNRNLYLLDLATGEITQLTDGPG--DNTFGGF---------LSPDDRALYYVKNGRSLRRVD  108 (386)
T ss_dssp             -B-TTS-EEEEEE-TT--SS-EEEEEETTT-EEEE---SS---B-TTT-E---------E-TTSSEEEEEETTTEEEEEE
T ss_pred             CcCCCCCEEEEEeccC--CCcceEEEEcccCEEEECccCCC--CCccceE---------EecCCCeEEEEECCCeEEEEE
Confidence            3678898888876644  67788999988762222222111  1111111         156777765443445677777


Q ss_pred             cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec--CCCCCcEEEEEEc----------------
Q 018293           82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW--NKEFRNILASASA----------------  143 (358)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~l~s~~~----------------  143 (358)
                      +.+.+...-..                           -....+-...|  +.+ ..+++-.-.                
T Consensus       109 L~T~e~~~vy~---------------------------~p~~~~g~gt~v~n~d-~t~~~g~e~~~~d~~~l~~~~~f~e  160 (386)
T PF14583_consen  109 LDTLEERVVYE---------------------------VPDDWKGYGTWVANSD-CTKLVGIEISREDWKPLTKWKGFRE  160 (386)
T ss_dssp             TTT--EEEEEE-----------------------------TTEEEEEEEEE-TT-SSEEEEEEEEGGG-----SHHHHHH
T ss_pred             CCcCcEEEEEE---------------------------CCcccccccceeeCCC-ccEEEEEEEeehhccCccccHHHHH
Confidence            77643221111                           11222222333  222 333322111                


Q ss_pred             ------CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeC---CC-cEEEEEcccCCCcc-ceeee--cCC
Q 018293          144 ------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---DR-SVVMKDARISTHSG-FKWAV--AAD  210 (358)
Q Consensus       144 ------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg-~i~i~d~~~~~~~~-~~~~~--~~~  210 (358)
                            ...|.--|+.+|+....+. ....+..+.|+|..+.+++-|-+   +. .-++|-+++..... ....+  ...
T Consensus       161 ~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~  239 (386)
T PF14583_consen  161 FYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGES  239 (386)
T ss_dssp             HHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEE
T ss_pred             HHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcc
Confidence                  1235556777776544444 45677889999988676666543   22 23667666433211 11111  223


Q ss_pred             eeeEEEcCCCCCeEEEEec----CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC---
Q 018293          211 VESLAWDPHAEHSFVVSLE----DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---  283 (358)
Q Consensus       211 i~~~~~~~~~~~~~~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg---  283 (358)
                      +.-=-|.|++..+...+..    +..|.-+|+.+.         .... +. ......-+..++++ .+++-=+.|.   
T Consensus       240 ~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~---------~~~~-~~-~~p~~~H~~ss~Dg-~L~vGDG~d~p~~  307 (386)
T PF14583_consen  240 VGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG---------ERRR-LM-EMPWCSHFMSSPDG-KLFVGDGGDAPVD  307 (386)
T ss_dssp             EEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-----------EEE-EE-EE-SEEEEEE-TTS-SEEEEEE------
T ss_pred             cccccccCCCCEEEEEeecCCCCceEEEeeCCCCC---------CceE-EE-eCCceeeeEEcCCC-CEEEecCCCCCcc
Confidence            4444688888766665432    335666777765         2211 11 11234456667777 6655433321   


Q ss_pred             -------------cEEEEecCCCCceeeEec-------CCCCc-eeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          284 -------------MVKLWDLSNNQPSCIASR-------NPKAG-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       284 -------------~i~i~d~~~~~~~~~~~~-------~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                                   -|+++++..++...+...       .++.. .=....|+|||+++|.++...|...||-+.
T Consensus       308 v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  308 VADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             -------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             ccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence                         466778776653322221       11111 123578999999999999999988888654

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.94  E-value=2e-05  Score=59.71  Aligned_cols=143  Identities=15%  Similarity=0.135  Sum_probs=83.2

Q ss_pred             EEEEEeCCCcEEEEEcccCCCccceee-ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee
Q 018293          180 ILLSGSFDRSVVMKDARISTHSGFKWA-VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA  258 (358)
Q Consensus       180 ~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  258 (358)
                      .+...+.||.|.-++++..+....... +.....-+.    ....+++|+.+|.|.+|......        ........
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~----~~~~~~vG~~dg~v~~~n~n~~g--------~~~d~~~s   99 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT----ASAKLMVGTSDGAVYVFNWNLEG--------AHSDRVCS   99 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcceeecc----cCceEEeecccceEEEecCCccc--------hHHHhhhc
Confidence            455566788888888775443221111 111111122    34479999999999999887321        11111112


Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCC-ceeEEEEEcCCCCeEEEEE--ccCCeEEEEEc
Q 018293          259 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIG--GSKGKLEIWDT  335 (358)
Q Consensus       259 ~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~--~~dg~i~vw~~  335 (358)
                      -...|.++.-.-+...+..+++.||.|+.|++.-.+.  +-....|. .++.....+..++ .++.+  |.|..++.|++
T Consensus       100 ~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~--~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  100 GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV--LGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             ccccceeccccccccceeEEeccCCceeeeccccCce--eeeeccccCCCcceeEEecCCc-eEEeeccccchhhhhcch
Confidence            2233333332222225899999999999999988773  33344454 4555555555566 36666  77777888877


Q ss_pred             cC
Q 018293          336 LS  337 (358)
Q Consensus       336 ~~  337 (358)
                      ..
T Consensus       177 e~  178 (238)
T KOG2444|consen  177 EK  178 (238)
T ss_pred             hh
Confidence            54

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.90  E-value=0.003  Score=57.17  Aligned_cols=192  Identities=17%  Similarity=0.236  Sum_probs=101.3

Q ss_pred             EEEecCCCCCcEEEEEEcC------CeEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeCCCc-----EEE
Q 018293          126 LGLAWNKEFRNILASASAD------KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRS-----VVM  192 (358)
Q Consensus       126 ~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~i  192 (358)
                      .+++...  +.+.++|+.|      .++..||..+.+-..  .+........ ++. -+| .+.++|+.||.     +-.
T Consensus       326 ~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~~-l~g-~iYavGG~dg~~~l~svE~  400 (571)
T KOG4441|consen  326 VGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VAV-LDG-KLYAVGGFDGEKSLNSVEC  400 (571)
T ss_pred             ccEEEEC--CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce-eEE-ECC-EEEEEeccccccccccEEE
Confidence            3444443  4688889888      357788887765332  2221111111 111 133 78888988875     666


Q ss_pred             EEcccCCCccc--eeeecCCeeeEEEcCCCCCeEEEEecCC------eEEEEEcccCCCCCCCCCCCccEEEeecCCcee
Q 018293          193 KDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDG------TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC  264 (358)
Q Consensus       193 ~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~  264 (358)
                      ||..+.+-...  ..........+.+   ++.+.++|+.++      .+..||..+..-       .....+..-.... 
T Consensus       401 YDp~~~~W~~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~W-------~~~~~M~~~R~~~-  469 (571)
T KOG4441|consen  401 YDPVTNKWTPVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNTW-------TLIAPMNTRRSGF-  469 (571)
T ss_pred             ecCCCCcccccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCce-------eecCCcccccccc-
Confidence            77766543221  1111122222222   456777777554      567888877632       1111121111111 


Q ss_pred             EEEecCCCCcEEEEEeCCCc-----EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC-----eEEEEE
Q 018293          265 TISYNPLVPNLLATGSTDKM-----VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-----KLEIWD  334 (358)
Q Consensus       265 ~i~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~vw~  334 (358)
                      .++... + .+.+.|+.|+.     |..||..+.+...+.........+....+  ++. +++.|+.||     +|..||
T Consensus       470 g~a~~~-~-~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~-ly~vGG~~~~~~l~~ve~yd  544 (571)
T KOG4441|consen  470 GVAVLN-G-KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGK-LYAVGGFDGNNNLNTVECYD  544 (571)
T ss_pred             eEEEEC-C-EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCE-EEEEecccCccccceeEEcC
Confidence            233332 3 67788887763     78899998886555333333222222222  333 788899887     466776


Q ss_pred             ccCC
Q 018293          335 TLSD  338 (358)
Q Consensus       335 ~~~~  338 (358)
                      ..+.
T Consensus       545 p~~d  548 (571)
T KOG4441|consen  545 PETD  548 (571)
T ss_pred             CCCC
Confidence            6553

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.85  E-value=0.0027  Score=42.82  Aligned_cols=98  Identities=23%  Similarity=0.259  Sum_probs=66.4

Q ss_pred             EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      |..++.+.|++|+.|..|++|+-.           ..+..+.. ...|++++-...  ..++.+..+|+|-+|+..... 
T Consensus        10 ~d~dg~~eLlvGs~D~~IRvf~~~-----------e~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~Rl-   74 (111)
T PF14783_consen   10 FDGDGENELLVGSDDFEIRVFKGD-----------EIVAEITE-TDKVTSLCSLGG--GRFAYALANGTVGVYDRSQRL-   74 (111)
T ss_pred             cCCCCcceEEEecCCcEEEEEeCC-----------cEEEEEec-ccceEEEEEcCC--CEEEEEecCCEEEEEeCccee-
Confidence            445567899999999999999875           44555544 456777777664  578899999999999874432 


Q ss_pred             eeeEecCCCCceeEEEEEcC---CCCeEEEEEccCCeEEE
Q 018293          296 SCIASRNPKAGAVFSVAFSE---DSPFVLAIGGSKGKLEI  332 (358)
Q Consensus       296 ~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~v  332 (358)
                         ...... ..+.++.+..   ||..-|++|-.+|.|-+
T Consensus        75 ---WRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   75 ---WRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ---eeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence               222222 2355554433   44444888888888753

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.85  E-value=0.00051  Score=58.84  Aligned_cols=158  Identities=18%  Similarity=0.148  Sum_probs=86.1

Q ss_pred             ceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC
Q 018293          167 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD  246 (358)
Q Consensus       167 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~  246 (358)
                      .|+.+.|.++. ..|+++...|.|.+|.....+...  .....+-....+.+-       ...++.-.+-|+........
T Consensus         3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~l~di~~r~~~~~   72 (395)
T PF08596_consen    3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF-------SLNNSPGKLTDISDRAPPSL   72 (395)
T ss_dssp             -EEEEEEETTT-TEEEEEETTS-EEEEEEEE--------------------S---------GGGSS-SEEE-GGG--TT-
T ss_pred             eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc-------cccCCCcceEEehhhCCccc
Confidence            47889999987 789999999999999877654322  000011111111110       11122233445544321111


Q ss_pred             CCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCC------CCceeEEEEEcC-----
Q 018293          247 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP------KAGAVFSVAFSE-----  315 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~v~~~~~~~-----  315 (358)
                      .....+..-+....++|++++.+.-|  +++.|..+|.+.|.|+|....+....+..      ....++++.|.-     
T Consensus        73 ~~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~  150 (395)
T PF08596_consen   73 KEGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG  150 (395)
T ss_dssp             SEEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred             ccccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence            11124445556668999999998655  99999999999999998876544433333      234577887762     


Q ss_pred             CC--CeEEEEEccCCeEEEEEcc
Q 018293          316 DS--PFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       316 ~~--~~~l~~~~~dg~i~vw~~~  336 (358)
                      |+  .-++.+|...|.+.+|.+.
T Consensus       151 D~ySSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  151 DGYSSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             SSSEEEEEEEEETTSEEEEEEEE
T ss_pred             CcccceEEEEEeCCCCEEEEEEe
Confidence            22  1257788999999999885

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=0.00015  Score=62.94  Aligned_cols=96  Identities=16%  Similarity=0.261  Sum_probs=75.8

Q ss_pred             ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCcee-EEEecCCCCcEEEEEeCCCcE
Q 018293          207 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC-TISYNPLVPNLLATGSTDKMV  285 (358)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~~l~~~~~dg~i  285 (358)
                      ....+..+.|+| .-.++|.++.+|.|.++.+. .         +.+..+..+...++ +++|.||| ++|+.|-.||+|
T Consensus        19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~---------qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I   86 (665)
T KOG4640|consen   19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLN-W---------QRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTI   86 (665)
T ss_pred             cccceEEEEEcC-ccchhheeccCCcEEEEEec-c---------ceeEeccCCCCccceeeeecCCC-CEEEEEecCCeE
Confidence            345678899999 56699999999999999887 3         67778877777777 99999998 999999999999


Q ss_pred             EEEecCCCCceeeEecCCCCceeEEEEEcC
Q 018293          286 KLWDLSNNQPSCIASRNPKAGAVFSVAFSE  315 (358)
Q Consensus       286 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  315 (358)
                      ++.|+.++....-. .-.....|.++.|.+
T Consensus        87 ~L~Dve~~~~l~~~-~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   87 RLHDVEKGGRLVSF-LFSVETDISKGIWDR  115 (665)
T ss_pred             EEEEccCCCceecc-ccccccchheeeccc
Confidence            99999998743221 122345678888864

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.80  E-value=0.013  Score=48.10  Aligned_cols=238  Identities=18%  Similarity=0.149  Sum_probs=125.7

Q ss_pred             CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293           63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  142 (358)
Q Consensus        63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  142 (358)
                      ..++.|+.|+.+| +.+++.........                          .  .+...|..+...|+ -+.+++-+
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~--------------------------i--~~~~~I~ql~vl~~-~~~llvLs   54 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR--------------------------I--LKLSSITQLSVLPE-LNLLLVLS   54 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCcccee--------------------------E--eecceEEEEEEecc-cCEEEEEc
Confidence            4688999999999 88998821111110                          0  12334999999988 44554443


Q ss_pred             cCCeEEEEECCCCceeeee--------------cccccceeeEE--EcCCCCcEEEEEeCCCcEEEEEcccCC----Ccc
Q 018293          143 ADKQVKIWDVAAGKCNLTL--------------EHHTDKVQAVA--WNHHSPQILLSGSFDRSVVMKDARIST----HSG  202 (358)
Q Consensus       143 ~dg~v~iwd~~~~~~~~~~--------------~~~~~~v~~~~--~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~  202 (358)
                       |+.+.++++..-......              ......+...+  -...+...++ ......|.+|......    ...
T Consensus        55 -d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~  132 (275)
T PF00780_consen   55 -DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLL  132 (275)
T ss_pred             -CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCccccccee
Confidence             599999998755433311              01122333333  1233323444 4445589998887642    122


Q ss_pred             ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCcc---EEEeecCCceeEEEecCCCCcEEEEE
Q 018293          203 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS---FTLHAHDKAVCTISYNPLVPNLLATG  279 (358)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~~~~~i~~i~~~~~~~~~l~~~  279 (358)
                      ........+..++|.+   +.++.|..++ ..+.|+.++....-.......   ........++..+.... + .+|++.
T Consensus       133 ke~~lp~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-e~Ll~~  206 (275)
T PF00780_consen  133 KEISLPDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-N-EFLLCY  206 (275)
T ss_pred             EEEEcCCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-c-eEEEEe
Confidence            3445678899999984   3677776554 778898865331100000000   00011122344444443 3 555543


Q ss_pred             eCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293          280 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       280 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                        |..-.+.|.. +++.....+.-. ....++++.  .+|+++ .+ ++.|.||++.+++.++....
T Consensus       207 --~~~g~fv~~~-G~~~r~~~i~W~-~~p~~~~~~--~pyli~-~~-~~~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  207 --DNIGVFVNKN-GEPSRKSTIQWS-SAPQSVAYS--SPYLIA-FS-SNSIEVRSLETGELVQTIPL  265 (275)
T ss_pred             --cceEEEEcCC-CCcCcccEEEcC-CchhEEEEE--CCEEEE-EC-CCEEEEEECcCCcEEEEEEC
Confidence              3333344443 332221122211 234455553  345554 33 35699999999988765543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.77  E-value=0.0086  Score=53.56  Aligned_cols=191  Identities=15%  Similarity=0.199  Sum_probs=109.5

Q ss_pred             EEEEEEcCCeEEEEECCCCceeeeeccccc------ce--eeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeec
Q 018293          137 ILASASADKQVKIWDVAAGKCNLTLEHHTD------KV--QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  208 (358)
Q Consensus       137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------~v--~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  208 (358)
                      .++.++.++.|.-.|.++++.+..+.....      .+  ..+... ++ ..++.++.++.|..+|.++++..-......
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~-~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DP-RKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cC-CeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            567778889999999999988877653322      00  011111 21 467788889999999999887653221111


Q ss_pred             CC-----e-eeEEEcCCCCCeEEEEe---------cCCeEEEEEcccCCCCCCCCCCCccEEEeecCC------------
Q 018293          209 AD-----V-ESLAWDPHAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK------------  261 (358)
Q Consensus       209 ~~-----i-~~~~~~~~~~~~~~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~------------  261 (358)
                      ..     + ....+.  + ..+++++         .+|.+..+|..+++         .+........            
T Consensus       141 ~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~---------~~W~~~~~~~~~~~~~~~~~~~  208 (488)
T cd00216         141 QVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGK---------LLWRFYTTEPDPNAFPTWGPDR  208 (488)
T ss_pred             CcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCc---------eeeEeeccCCCcCCCCCCCCCc
Confidence            10     1 111222  1 2455554         36788999998873         3333322100            


Q ss_pred             --------ce-eEEEecCCCCcEEEEEeCCC------------------cEEEEecCCCCceeeEecCCCCc--------
Q 018293          262 --------AV-CTISYNPLVPNLLATGSTDK------------------MVKLWDLSNNQPSCIASRNPKAG--------  306 (358)
Q Consensus       262 --------~i-~~i~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~--------  306 (358)
                              .+ .+.++.+.+ ..++.++.++                  .|.-+|..+++..-......+..        
T Consensus       209 ~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~  287 (488)
T cd00216         209 QMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQ  287 (488)
T ss_pred             ceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCC
Confidence                    01 123444444 5677776555                  68899999998533332222211        


Q ss_pred             e-eEEEEEcCCCC--eEEEEEccCCeEEEEEccCCCcccc
Q 018293          307 A-VFSVAFSEDSP--FVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       307 ~-v~~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      + +..+. .-++.  .+++.++.+|.+...|..+|+.+-+
T Consensus       288 p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~  326 (488)
T cd00216         288 PSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA  326 (488)
T ss_pred             CeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence            1 11111 01222  2467788899999999999998754

The alignment model contains an 8-bladed beta-propeller.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.75  E-value=0.025  Score=49.61  Aligned_cols=242  Identities=14%  Similarity=0.151  Sum_probs=126.3

Q ss_pred             cccCCCceEEec-----CCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293           60 KDREKGNFMAVG-----SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF  134 (358)
Q Consensus        60 ~~s~~~~~l~~g-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  134 (358)
                      .+||+|+++|.+     +....|+++|+.+++.+....                            ....-..+.|.+++
T Consensus       130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i----------------------------~~~~~~~~~W~~d~  181 (414)
T PF02897_consen  130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI----------------------------ENPKFSSVSWSDDG  181 (414)
T ss_dssp             EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE----------------------------EEEESEEEEECTTS
T ss_pred             eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc----------------------------cccccceEEEeCCC
Confidence            458999999854     222479999998764433110                            01112238999995


Q ss_pred             CcEEEEEEcC----------CeEEEEECCCCcee--eeecccccc--eeeEEEcCCCCcEEEEEeCCC---cEEEEEccc
Q 018293          135 RNILASASAD----------KQVKIWDVAAGKCN--LTLEHHTDK--VQAVAWNHHSPQILLSGSFDR---SVVMKDARI  197 (358)
Q Consensus       135 ~~~l~s~~~d----------g~v~iwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~  197 (358)
                      ..++.+...+          ..|..|.+.+....  ..+......  ...+..++++..+++......   .+.+.|+..
T Consensus       182 ~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  182 KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence            5455554333          23778887766432  333333322  567888999844444444433   477777776


Q ss_pred             C----CCccceeeecCCe-eeEEEcCCCCCeEEEEe---cCCeEEEEEcccCCCCCCCCCCCccEEEeecCC--ceeEEE
Q 018293          198 S----THSGFKWAVAADV-ESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTIS  267 (358)
Q Consensus       198 ~----~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~~i~  267 (358)
                      .    ............+ ..+...  ++.+++...   .++.|.-.++.....      ......+..+..  .+..+.
T Consensus       262 ~~~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~------~~~~~~l~~~~~~~~l~~~~  333 (414)
T PF02897_consen  262 GGSPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSP------AEWWTVLIPEDEDVSLEDVS  333 (414)
T ss_dssp             TTTSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSG------GGEEEEEE--SSSEEEEEEE
T ss_pred             cCCCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccccccc------ccceeEEcCCCCceeEEEEE
Confidence            4    1222222223333 333333  333444432   346677777776521      011224445544  455555


Q ss_pred             ecCCCCcEEEEEeCCCc--EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC---CeEEEEEccCCCc
Q 018293          268 YNPLVPNLLATGSTDKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK---GKLEIWDTLSDAG  340 (358)
Q Consensus       268 ~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~  340 (358)
                      ..  +..+++....++.  |+++++..+......... ..+.|..+...+++..+.+..+.-   +++..||+.+++.
T Consensus       334 ~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  334 LF--KDYLVLSYRENGSSRLRVYDLDDGKESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EE--TTEEEEEEEETTEEEEEEEETT-TEEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EE--CCEEEEEEEECCccEEEEEECCCCcEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            54  3356666666665  888998823222222333 345577777677766555554433   5788899988764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.72  E-value=0.019  Score=47.50  Aligned_cols=227  Identities=11%  Similarity=0.008  Sum_probs=122.2

Q ss_pred             ccCCCc-eEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           61 DREKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        61 ~s~~~~-~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      |.++.. ++.+--..+.|.-|+..++....                            + .+.+.+.++..-..++ .|+
T Consensus        32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~----------------------------~-~~p~~~~~~~~~d~~g-~Lv   81 (307)
T COG3386          32 WDPDRGALLWVDILGGRIHRLDPETGKKRV----------------------------F-PSPGGFSSGALIDAGG-RLI   81 (307)
T ss_pred             CcCCCCEEEEEeCCCCeEEEecCCcCceEE----------------------------E-ECCCCcccceeecCCC-eEE
Confidence            456665 44555566788888775332111                            0 1223344444443424 454


Q ss_pred             EEEcCCeEEEEECCCCceeeeec----c-cccceeeEEEcCCCCcEEEEEeC-----------CCcEEEEEcccCCCccc
Q 018293          140 SASADKQVKIWDVAAGKCNLTLE----H-HTDKVQAVAWNHHSPQILLSGSF-----------DRSVVMKDARISTHSGF  203 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~----~-~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~  203 (358)
                      ++.  ..+.+++.+++..+..+.    + .....+.+...|+| .+.++...           -|.++.+|. .+.....
T Consensus        82 ~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l  157 (307)
T COG3386          82 ACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRL  157 (307)
T ss_pred             EEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcC-CCCEEEe
Confidence            443  336777776665422221    1 12345677888888 54443322           133444443 2333332


Q ss_pred             eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC
Q 018293          204 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  283 (358)
Q Consensus       204 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg  283 (358)
                      ...+-...+.++|+|++..++++=+..+.|.-|++.......  .............+..-.++...+| ++.+++..+|
T Consensus       158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~--~~~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g  234 (307)
T COG3386         158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPI--GGRRGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGG  234 (307)
T ss_pred             ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCcc--CCcceEEEccCCCCCCCceEEeCCC-CEEEecccCC
Confidence            233345567899999877666666667889888886411100  0001122222344556677788777 5554444444


Q ss_pred             -cEEEEecCCCCceeeEecCCCCceeEEEEEc-CCCCeEEEEEccC
Q 018293          284 -MVKLWDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGGSK  327 (358)
Q Consensus       284 -~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~d  327 (358)
                       .|.+|+.. +++.....+.  ...+++++|- |+.+.+++++...
T Consensus       235 ~~v~~~~pd-G~l~~~i~lP--~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         235 GRVVRFNPD-GKLLGEIKLP--VKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             ceEEEECCC-CcEEEEEECC--CCCCccceEeCCCcCEEEEEecCC
Confidence             89999998 6644444433  3567778885 4556577777655

>smart00320 WD40 WD40 repeats

Probab=97.72  E-value=0.00012  Score=39.19  Aligned_cols=38  Identities=32%  Similarity=0.335  Sum_probs=33.1

Q ss_pred             ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEE
Q 018293          156 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  194 (358)
Q Consensus       156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  194 (358)
                      ++...+..|...|.++.|.+.+ ..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            4556677788899999999988 8899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PHA02713 hypothetical protein; Provisional

Probab=97.68  E-value=0.0011  Score=60.07  Aligned_cols=186  Identities=5%  Similarity=0.029  Sum_probs=92.8

Q ss_pred             CcEEEEEEcC------CeEEEEECCCCcee--eeecccccceeeEEEcCCCCcEEEEEeCCC-----cEEEEEcccCCCc
Q 018293          135 RNILASASAD------KQVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHS  201 (358)
Q Consensus       135 ~~~l~s~~~d------g~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~  201 (358)
                      +.+++.|+.+      ..+..||..+.+-.  ..+....... +++. -++ .+.+.|+.++     .+..||..+.+-.
T Consensus       304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~~g-~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-IDD-TIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-ECC-EEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            4577777753      34778888766432  1111111111 2222 234 6777787654     4778888765321


Q ss_pred             c--ceeeecCCeeeEEEcCCCCCeEEEEecCC-----------------------eEEEEEcccCCCCCCCCCCCccEEE
Q 018293          202 G--FKWAVAADVESLAWDPHAEHSFVVSLEDG-----------------------TIKGFDIRTAKSDPDSTSQQSSFTL  256 (358)
Q Consensus       202 ~--~~~~~~~~i~~~~~~~~~~~~~~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~~~~  256 (358)
                      .  ...........+..   ++.+.+.|+.++                       .+..||..+.+-       ..+..+
T Consensus       381 ~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W-------~~v~~m  450 (557)
T PHA02713        381 MLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW-------ETLPNF  450 (557)
T ss_pred             ECCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE-------eecCCC
Confidence            1  01111111222222   355677776542                       467787766421       111111


Q ss_pred             eecCCceeEEEecCCCCcEEEEEeCC------CcEEEEecCC-CCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC-
Q 018293          257 HAHDKAVCTISYNPLVPNLLATGSTD------KMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-  328 (358)
Q Consensus       257 ~~~~~~i~~i~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-  328 (358)
                      ...... .+++.. ++ .+.+.|+.+      ..+..||..+ .+...+..+.........+.+  +|. ++++||.+| 
T Consensus       451 ~~~r~~-~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~-iyv~Gg~~~~  524 (557)
T PHA02713        451 WTGTIR-PGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNT-IMMLHCYESY  524 (557)
T ss_pred             Cccccc-CcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCE-EEEEeeecce
Confidence            111111 122222 23 566667654      2367899988 565444444333332222232  455 899999888 


Q ss_pred             -eEEEEEccCCC
Q 018293          329 -KLEIWDTLSDA  339 (358)
Q Consensus       329 -~i~vw~~~~~~  339 (358)
                       .+..||..+.+
T Consensus       525 ~~~e~yd~~~~~  536 (557)
T PHA02713        525 MLQDTFNVYTYE  536 (557)
T ss_pred             eehhhcCccccc
Confidence             77788877644

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.003  Score=54.19  Aligned_cols=140  Identities=17%  Similarity=0.189  Sum_probs=95.7

Q ss_pred             EEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCC------cEEEEEeCCCcEEEEEcccCCCccce------
Q 018293          137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP------QILLSGSFDRSVVMKDARISTHSGFK------  204 (358)
Q Consensus       137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~------  204 (358)
                      +|.++.....++-.|++.|+.+.+..-+.. |.-+.+.|+..      ..-+.|-.|..|.-||.+-...-...      
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            455556667788899999999999987666 77777777642      12245667889999999854431111      


Q ss_pred             eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc
Q 018293          205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  284 (358)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  284 (358)
                      ........|.+-..  ..++++|+.+|.|++||--..         .....+++-..+|..+..+.+| .+|++.+ +..
T Consensus       427 y~~k~nFsc~aTT~--sG~IvvgS~~GdIRLYdri~~---------~AKTAlPgLG~~I~hVdvtadG-Kwil~Tc-~ty  493 (644)
T KOG2395|consen  427 YSTKNNFSCFATTE--SGYIVVGSLKGDIRLYDRIGR---------RAKTALPGLGDAIKHVDVTADG-KWILATC-KTY  493 (644)
T ss_pred             cccccccceeeecC--CceEEEeecCCcEEeehhhhh---------hhhhcccccCCceeeEEeeccC-cEEEEec-ccE
Confidence            11223345555444  448999999999999998332         4445567778899999999998 5555444 556


Q ss_pred             EEEEec
Q 018293          285 VKLWDL  290 (358)
Q Consensus       285 i~i~d~  290 (358)
                      +.+-++
T Consensus       494 LlLi~t  499 (644)
T KOG2395|consen  494 LLLIDT  499 (644)
T ss_pred             EEEEEE
Confidence            666665

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.65  E-value=0.013  Score=49.24  Aligned_cols=200  Identities=13%  Similarity=0.133  Sum_probs=95.3

Q ss_pred             ecCCCCCcEEEEEEcCCe--EEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee
Q 018293          129 AWNKEFRNILASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA  206 (358)
Q Consensus       129 ~~~~~~~~~l~s~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  206 (358)
                      +|.++|.++|+++..||.  +.+.|+.+++..+...+.........++|++ +.++-......|+-.|+++.+.......
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC-CeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            578887778887777764  6666888887665554332334456777887 6665555567888899988775543333


Q ss_pred             ecCCeeeEEEcCCCCCeEEEEec-----------------------CCeEEEEEcccCCCCCCCCCCCccEEEeecCCce
Q 018293          207 VAADVESLAWDPHAEHSFVVSLE-----------------------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  263 (358)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~~~~-----------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i  263 (358)
                      ....+....|..+.....++|..                       ...|.-.|+.++         + ...+..-...+
T Consensus       121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG---------~-~~~v~~~~~wl  190 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG---------E-RKVVFEDTDWL  190 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT------------EEEEEEESS-E
T ss_pred             CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC---------c-eeEEEecCccc
Confidence            34444445564322233344321                       112333444433         2 23333345667


Q ss_pred             eEEEecCCCCcEEEEEeC---CCc-EEEEecCC--CCceeeEecCCCCceeEEEEEcCCCCeEEEEEc----cCCeEEEE
Q 018293          264 CTISYNPLVPNLLATGST---DKM-VKLWDLSN--NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG----SKGKLEIW  333 (358)
Q Consensus       264 ~~i~~~~~~~~~l~~~~~---dg~-i~i~d~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~vw  333 (358)
                      .-+.|+|..+.+|+-|.+   +.. -+||-+++  .....+... .....+..=-|.|||..+..-+-    .+..|.-+
T Consensus       191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~  269 (386)
T PF14583_consen  191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGY  269 (386)
T ss_dssp             EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE
T ss_pred             cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCCEEEEEeecCCCCceEEEee
Confidence            888999988666666554   221 25565543  332222222 12344556678999986554332    24456777


Q ss_pred             EccCCCc
Q 018293          334 DTLSDAG  340 (358)
Q Consensus       334 ~~~~~~~  340 (358)
                      |+.+++.
T Consensus       270 d~~t~~~  276 (386)
T PF14583_consen  270 DPDTGER  276 (386)
T ss_dssp             -TTT--E
T ss_pred             CCCCCCc
Confidence            7777653

>smart00320 WD40 WD40 repeats

Probab=97.60  E-value=0.00022  Score=38.04  Aligned_cols=38  Identities=34%  Similarity=0.575  Sum_probs=32.7

Q ss_pred             CccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 018293          251 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  289 (358)
Q Consensus       251 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d  289 (358)
                      .+...+..|...|.++.|.+.+ .++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            4455667788899999999987 8999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.58  E-value=0.053  Score=48.91  Aligned_cols=150  Identities=9%  Similarity=0.050  Sum_probs=83.1

Q ss_pred             CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCc--ccEEE-EecCCCCCcEEEEE
Q 018293           65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT--DSVLG-LAWNKEFRNILASA  141 (358)
Q Consensus        65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~-~~~~~~~~~~l~s~  141 (358)
                      +..++.++.|+.|.-.|..+++..-.....                         .+.  ..+++ -... + + .++.+
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~-------------------------~~~~~~~~tssP~v~-~-g-~Vivg  171 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNG-------------------------DYKAGYTITAAPLVV-K-G-KVITG  171 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccc-------------------------cccccccccCCcEEE-C-C-EEEEe
Confidence            456777888999999999887765432110                         000  01111 0011 2 3 44444


Q ss_pred             E------cCCeEEEEECCCCceeeeeccccc-------------------------------ce-eeEEEcCCCCcEEEE
Q 018293          142 S------ADKQVKIWDVAAGKCNLTLEHHTD-------------------------------KV-QAVAWNHHSPQILLS  183 (358)
Q Consensus       142 ~------~dg~v~iwd~~~~~~~~~~~~~~~-------------------------------~v-~~~~~~~~~~~~l~~  183 (358)
                      .      .+|.|..+|.++|+.+..+..-..                               .+ ..+.+.+.. .+++.
T Consensus       172 ~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~-~lvy~  250 (527)
T TIGR03075       172 ISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPET-NLIYF  250 (527)
T ss_pred             ecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCC-CeEEE
Confidence            3      268999999999988766532111                               01 123455554 44444


Q ss_pred             EeC-----CC-----------cEEEEEcccCCCccceeeecC---------CeeeEEEcCCCC--CeEEEEecCCeEEEE
Q 018293          184 GSF-----DR-----------SVVMKDARISTHSGFKWAVAA---------DVESLAWDPHAE--HSFVVSLEDGTIKGF  236 (358)
Q Consensus       184 ~~~-----dg-----------~i~i~d~~~~~~~~~~~~~~~---------~i~~~~~~~~~~--~~~~~~~~dg~i~i~  236 (358)
                      +..     ++           +|.-.|+++++..-.......         ...-+.+..++.  ..++.+..+|.+++.
T Consensus       251 ~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vl  330 (527)
T TIGR03075       251 GTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVL  330 (527)
T ss_pred             eCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEE
Confidence            431     12           566677777776543322111         122223323333  477789999999999


Q ss_pred             EcccCCC
Q 018293          237 DIRTAKS  243 (358)
Q Consensus       237 d~~~~~~  243 (358)
                      |.++++.
T Consensus       331 Dr~tG~~  337 (527)
T TIGR03075       331 DRTNGKL  337 (527)
T ss_pred             ECCCCce
Confidence            9998865

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.58  E-value=1.3e-05  Score=67.40  Aligned_cols=210  Identities=18%  Similarity=0.223  Sum_probs=139.8

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  200 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  200 (358)
                      +-.......|-|.+.+ ++.++.+..+..|| +.++...... .+.....++|..+++..++.+-..+.+.+||+.+...
T Consensus        33 alv~pi~~~w~~e~~n-lavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt  109 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHN-LAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT  109 (615)
T ss_pred             hccccceeeEecCCCc-eehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence            3334445578888665 77777888999999 4455544444 3556678899998877788888999999999987655


Q ss_pred             ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe
Q 018293          201 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       201 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~  280 (358)
                      .....+....-.-+.|++ +...++.+...|.+.+|+....         +.......|...++++++.+.+  +.+.++
T Consensus       110 qqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgts---------R~iiv~Gkh~RRgtq~av~lEd--~vil~d  177 (615)
T KOG2247|consen  110 QQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTS---------RRIIVMGKHQRRGTQIAVTLED--YVILCD  177 (615)
T ss_pred             HHHhccCcchHHHHhhcc-CCccccccccccceEEEeccch---------hhhhhhcccccceeEEEecccc--eeeecC
Confidence            443333333334478888 5667888889999999999876         4444555588889999999854  444444


Q ss_pred             CCCc----------EEEEecCCC----------------------------------------CceeeEecCCCCceeEE
Q 018293          281 TDKM----------VKLWDLSNN----------------------------------------QPSCIASRNPKAGAVFS  310 (358)
Q Consensus       281 ~dg~----------i~i~d~~~~----------------------------------------~~~~~~~~~~~~~~v~~  310 (358)
                      .|..          +..+.....                                        ++..+ .++...+.+.+
T Consensus       178 cd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval-~fq~~~gni~c  256 (615)
T KOG2247|consen  178 CDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL-QFQEKYGNIHC  256 (615)
T ss_pred             cHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce-EeeecCCceeE
Confidence            4432          333332210                                        01112 33333456788


Q ss_pred             EEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293          311 VAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       311 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                      ..|--||.  +.-+..-|.|..-.+.+++...++|...
T Consensus       257 yrwylDg~--i~igf~ag~iV~iS~h~aeLgaeffqkl  292 (615)
T KOG2247|consen  257 YRWYLDGY--ILIGFDAGYIVSISAHNAELGAEFFQKL  292 (615)
T ss_pred             EEEecccc--ccccccceeEEEEeccchHHHHHHHHHh
Confidence            88888886  3346666777777788888777666544

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.56  E-value=0.00045  Score=52.55  Aligned_cols=106  Identities=12%  Similarity=0.093  Sum_probs=68.4

Q ss_pred             CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293           65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  144 (358)
Q Consensus        65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  144 (358)
                      +.-+++|+.+|.|++|+.+....+...                          ...-...|.++--.-+.+.+..+++.|
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~--------------------------~~s~~e~i~~~Ip~~~~~~~~c~~~~d  123 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDR--------------------------VCSGEESIDLGIPNGRDSSLGCVGAQD  123 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHh--------------------------hhcccccceeccccccccceeEEeccC
Confidence            567899999999999998732222111                          011223344443333334589999999


Q ss_pred             CeEEEEECCCCceeeeecccc-cceeeEEEcCCCCcEEEEE--eCCCcEEEEEccc
Q 018293          145 KQVKIWDVAAGKCNLTLEHHT-DKVQAVAWNHHSPQILLSG--SFDRSVVMKDARI  197 (358)
Q Consensus       145 g~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~  197 (358)
                      |.|+.|+++-++.+.....|. .++..+.....+ .++..+  +.|..++.|++..
T Consensus       124 g~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  124 GRIRACNIKPNKVLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CceeeeccccCceeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence            999999999888877777776 445444444444 455555  6666677776653

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.52  E-value=0.032  Score=44.66  Aligned_cols=171  Identities=18%  Similarity=0.212  Sum_probs=107.8

Q ss_pred             CCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeeccc-ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC
Q 018293          120 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  198 (358)
Q Consensus       120 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  198 (358)
                      +-...+.++.|+|+ .+.|++......-.++=..+|+.+.++.-. -.....+.+..++ .++++--.++.+.++.+...
T Consensus        83 g~~~nvS~LTynp~-~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          83 GETANVSSLTYNPD-TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccceeeCCC-cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEcCC
Confidence            44556999999999 556666666666667766788888877421 1234567787777 77777778888888877654


Q ss_pred             CCccc----e------eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC-CCCCCccEEEeecCCceeEEE
Q 018293          199 THSGF----K------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-STSQQSSFTLHAHDKAVCTIS  267 (358)
Q Consensus       199 ~~~~~----~------~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~  267 (358)
                      .....    .      .........++|+|.+. .++..-+..-+.+|.......... .....+.....-.-..+.++.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            32110    0      11145678899999655 666666677777777764321100 000000001011124578889


Q ss_pred             ecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293          268 YNPLVPNLLATGSTDKMVKLWDLSNN  293 (358)
Q Consensus       268 ~~~~~~~~l~~~~~dg~i~i~d~~~~  293 (358)
                      |++..+.+|+-+.+++.+.-.|....
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCCC
Confidence            99877678888888888888887654

>PHA02713 hypothetical protein; Provisional

Probab=97.51  E-value=0.024  Score=51.56  Aligned_cols=146  Identities=11%  Similarity=0.082  Sum_probs=75.0

Q ss_pred             CcEEEEEEcCC-----eEEEEECCCCcee--eeecccccceeeEEEcCCCCcEEEEEeCCC-------------------
Q 018293          135 RNILASASADK-----QVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSFDR-------------------  188 (358)
Q Consensus       135 ~~~l~s~~~dg-----~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------------------  188 (358)
                      +.+.+.|+.++     ++..||..+.+-.  ..+.........+..  ++ .+.+.|+.++                   
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CC-EEEEEeCCCcccccccccccccccccccc
Confidence            45677777654     4888998766432  222211111112222  34 6777777543                   


Q ss_pred             ----cEEEEEcccCCCc--cceeeecCCeeeEEEcCCCCCeEEEEecC------CeEEEEEccc-CCCCCCCCCCCccEE
Q 018293          189 ----SVVMKDARISTHS--GFKWAVAADVESLAWDPHAEHSFVVSLED------GTIKGFDIRT-AKSDPDSTSQQSSFT  255 (358)
Q Consensus       189 ----~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~  255 (358)
                          .+..||..+.+-.  ............+.+   ++.+.+.|+.+      ..+..||..+ .+       ...+..
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-------W~~~~~  498 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-------WELITT  498 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCC-------eeEccc
Confidence                4667887665321  111111111122222   34566777654      2467888876 32       122223


Q ss_pred             EeecCCceeEEEecCCCCcEEEEEeCCC--cEEEEecCCCCce
Q 018293          256 LHAHDKAVCTISYNPLVPNLLATGSTDK--MVKLWDLSNNQPS  296 (358)
Q Consensus       256 ~~~~~~~i~~i~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~  296 (358)
                      +.........+.+  ++ .+.++|+.++  .+..||..+.+..
T Consensus       499 m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        499 TESRLSALHTILH--DN-TIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             cCcccccceeEEE--CC-EEEEEeeecceeehhhcCccccccc
Confidence            3322222222333  23 7888999888  6888888887753

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.46  E-value=0.04  Score=50.09  Aligned_cols=145  Identities=18%  Similarity=0.153  Sum_probs=75.5

Q ss_pred             CcEEEEEEcCCe-----EEEEECCCCcee--eeecccccceeeEEEcCCCCcEEEEEeCCC------cEEEEEcccCCCc
Q 018293          135 RNILASASADKQ-----VKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSFDR------SVVMKDARISTHS  201 (358)
Q Consensus       135 ~~~l~s~~~dg~-----v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~  201 (358)
                      +.+.|.|+.||.     |-.||..+.+-.  ..+.......-.+.+  ++ .+.++|+.++      ++..||..++.-.
T Consensus       381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g-~iYi~GG~~~~~~~l~sve~YDP~t~~W~  457 (571)
T KOG4441|consen  381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GG-KLYIIGGGDGSSNCLNSVECYDPETNTWT  457 (571)
T ss_pred             CEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CC-EEEEEcCcCCCccccceEEEEcCCCCcee
Confidence            668888988864     777887765432  212111111112222  33 6777777554      4667787765422


Q ss_pred             c--ceeeecCCeeeEEEcCCCCCeEEEEecCCe-----EEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc
Q 018293          202 G--FKWAVAADVESLAWDPHAEHSFVVSLEDGT-----IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  274 (358)
Q Consensus       202 ~--~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  274 (358)
                      .  .............+   ++.++++|+.|+.     |..||..+.+-       ..+..+......+-...+   +..
T Consensus       458 ~~~~M~~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~W-------~~v~~m~~~rs~~g~~~~---~~~  524 (571)
T KOG4441|consen  458 LIAPMNTRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQW-------TMVAPMTSPRSAVGVVVL---GGK  524 (571)
T ss_pred             ecCCcccccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCce-------eEcccCccccccccEEEE---CCE
Confidence            1  11111122222222   4568888887763     67788876531       222222222222222222   236


Q ss_pred             EEEEEeCCCc-----EEEEecCCCCc
Q 018293          275 LLATGSTDKM-----VKLWDLSNNQP  295 (358)
Q Consensus       275 ~l~~~~~dg~-----i~i~d~~~~~~  295 (358)
                      +.++|+.||.     |..||..+.+.
T Consensus       525 ly~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  525 LYAVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             EEEEecccCccccceeEEcCCCCCce
Confidence            7788887764     66677766653

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.45  E-value=0.048  Score=45.18  Aligned_cols=201  Identities=11%  Similarity=0.073  Sum_probs=112.4

Q ss_pred             EecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee-
Q 018293          128 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-  206 (358)
Q Consensus       128 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-  206 (358)
                      -.|.++.+.++.+--..+.|.-|+..+++. ..+. +.+.+.++.....+ ..|+++. . .+.+++...+........ 
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~-g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAG-GRLIACE-H-GVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCC-CeEEEEc-c-ccEEEeccCCceeEEeccc
Confidence            357787565777777889999999887643 2333 23334444444443 3444443 2 345556544433111111 


Q ss_pred             ----ecCCeeeEEEcCCCCCeEEEEecC------------CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecC
Q 018293          207 ----VAADVESLAWDPHAEHSFVVSLED------------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  270 (358)
Q Consensus       207 ----~~~~i~~~~~~~~~~~~~~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  270 (358)
                          .....+.+...|++.  +..++..            |.++-+|. .+         .....+..+-..-+.|+|+|
T Consensus       105 ~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g---------~~~~l~~~~~~~~NGla~Sp  172 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDP-DG---------GVVRLLDDDLTIPNGLAFSP  172 (307)
T ss_pred             cCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcC-CC---------CEEEeecCcEEecCceEECC
Confidence                124466777888643  3333333            22333332 12         33344444445568899999


Q ss_pred             CCCcEEEEEeCCCcEEEEecCC--C---CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC-eEEEEEccCCCccccc
Q 018293          271 LVPNLLATGSTDKMVKLWDLSN--N---QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-KLEIWDTLSDAGISNR  344 (358)
Q Consensus       271 ~~~~~l~~~~~dg~i~i~d~~~--~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~  344 (358)
                      |+..++++=+..+.|.-|++..  +   ............+..-.++...+|. +.+++..+| .|.+|+.. ++++.+.
T Consensus       173 Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i  250 (307)
T COG3386         173 DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GKLLGEI  250 (307)
T ss_pred             CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-CcEEEEE
Confidence            9955555555568888887752  1   1111222333445566788888898 454444444 89999988 7776654


Q ss_pred             ccc
Q 018293          345 FSK  347 (358)
Q Consensus       345 ~~~  347 (358)
                      ...
T Consensus       251 ~lP  253 (307)
T COG3386         251 KLP  253 (307)
T ss_pred             ECC
Confidence            443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.44  E-value=0.008  Score=56.13  Aligned_cols=102  Identities=17%  Similarity=0.197  Sum_probs=73.4

Q ss_pred             CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293           65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  144 (358)
Q Consensus        65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  144 (358)
                      +..++.|+..|.+...|+...-.                          +...-..-.++|++++|+.+ +..++.|-.+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~--------------------------~~~~ne~v~~~Vtsvafn~d-g~~l~~G~~~  151 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLG--------------------------PLHQNERVQGPVTSVAFNQD-GSLLLAGLGD  151 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccc--------------------------hhhcCCccCCcceeeEecCC-CceeccccCC
Confidence            44678888888888888754211                          00111234578999999999 6799999999


Q ss_pred             CeEEEEECCCCceeeeecccccceeeEE---EcCCCCcEEEEEeCCCcEEEEEcc
Q 018293          145 KQVKIWDVAAGKCNLTLEHHTDKVQAVA---WNHHSPQILLSGSFDRSVVMKDAR  196 (358)
Q Consensus       145 g~v~iwd~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~l~~~~~dg~i~i~d~~  196 (358)
                      |.|.+||+..++.++.+..|..+.+++-   +..++ ..++++...|.  +|.+.
T Consensus       152 G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~n-S~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  152 GHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQN-SKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             CcEEEEEccCCcceeeeeecCCccceEEEEEEeCCC-cEEEEccCCCc--eEEEE
Confidence            9999999999999888877776665543   34444 56888887776  56543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.43  E-value=0.061  Score=45.91  Aligned_cols=186  Identities=14%  Similarity=0.069  Sum_probs=83.4

Q ss_pred             CCCCcEEEEEEcC------CeEEEEECCCCceeeeeccc---ccceeeEEEcCCCCcEEEEEeC----------------
Q 018293          132 KEFRNILASASAD------KQVKIWDVAAGKCNLTLEHH---TDKVQAVAWNHHSPQILLSGSF----------------  186 (358)
Q Consensus       132 ~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~----------------  186 (358)
                      |+ +.+++++-.|      |-+.+.|-++.+........   ...-..+-|.|.. +.++++..                
T Consensus       139 p~-G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~  216 (461)
T PF05694_consen  139 PD-GRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLE  216 (461)
T ss_dssp             SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHH
T ss_pred             CC-ccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhh
Confidence            55 5567665332      46888888877776666432   2334567778876 67777653                


Q ss_pred             ----CCcEEEEEcccCCCccceeeec--CCeeeEEEc--CCCCCeEEEEecCCeEEEEEc-ccCCCCCCCCCCCccEEEe
Q 018293          187 ----DRSVVMKDARISTHSGFKWAVA--ADVESLAWD--PHAEHSFVVSLEDGTIKGFDI-RTAKSDPDSTSQQSSFTLH  257 (358)
Q Consensus       187 ----dg~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~--~~~~~~~~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~  257 (358)
                          ..++.+||+.+.+..+...-..  ..+..+.|.  |+...-++.+.-..+|..|-. ..+.-..     +.+..+.
T Consensus       217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a-----~kVi~ip  291 (461)
T PF05694_consen  217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA-----EKVIDIP  291 (461)
T ss_dssp             HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE-----EEEEEE-
T ss_pred             cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee-----eEEEECC
Confidence                3579999999887765332221  234456664  433333444444455554443 3221100     1112221


Q ss_pred             e-----------------cCCceeEEEecCCCCcEEEEEe-CCCcEEEEecCCCC-ceeeEec--C--------------
Q 018293          258 A-----------------HDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQ-PSCIASR--N--------------  302 (358)
Q Consensus       258 ~-----------------~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~~~~~~~--~--------------  302 (358)
                      .                 -..-|+.|.+|.|+ ++|...+ .+|.|+.||+.... +..+...  .              
T Consensus       292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~  370 (461)
T PF05694_consen  292 AKKVEGWILPEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGK  370 (461)
T ss_dssp             -EE--SS---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS---
T ss_pred             CcccCcccccccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccc
Confidence            1                 13457999999998 6666555 58999999998743 2222211  0              


Q ss_pred             CCCceeEEEEEcCCCCeEEEEEc
Q 018293          303 PKAGAVFSVAFSEDSPFVLAIGG  325 (358)
Q Consensus       303 ~~~~~v~~~~~~~~~~~~l~~~~  325 (358)
                      .-.+...-+..|-||+.+++|.|
T Consensus       371 ~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  371 RLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             ---S----EEE-TTSSEEEEE--
T ss_pred             ccCCCCCeEEEccCCeEEEEEee
Confidence            01223466888999987777654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.42  E-value=0.015  Score=46.45  Aligned_cols=174  Identities=11%  Similarity=0.134  Sum_probs=100.0

Q ss_pred             cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce-eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          162 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      .+-...+.++.|+|+. +.|++......-.++=...++.+... ...-.....+.+.. ++.++++--.++.+.++.+..
T Consensus        82 ~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          82 LGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             ccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcC
Confidence            3444559999999999 55555555555555544444443321 12234556677765 444555555678888887766


Q ss_pred             CCCCCCCCCC-CccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC-ceeeEecCCC-------CceeEEE
Q 018293          241 AKSDPDSTSQ-QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ-PSCIASRNPK-------AGAVFSV  311 (358)
Q Consensus       241 ~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~-------~~~v~~~  311 (358)
                      .......... -++......+...-.++|.|.+ +.|+.+-+..-+.||...... .........+       -..|.++
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl  238 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL  238 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence            5221111100 0111111225567899999988 666666666667777765432 1111111111       1247778


Q ss_pred             EEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          312 AFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       312 ~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      .|.+....+|+-+.+++.+.-.|....
T Consensus       239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         239 EFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             eecCCCCcEEEEecCCceEEEEecCCC
Confidence            888866668888888888877776543

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.36  E-value=0.057  Score=49.24  Aligned_cols=192  Identities=11%  Similarity=0.156  Sum_probs=98.3

Q ss_pred             ccEEEEecCCCCCcEEEEEE-----cCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCC--------
Q 018293          123 DSVLGLAWNKEFRNILASAS-----ADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--------  187 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~-----~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------  187 (358)
                      ..+...+++|+|....++..     .|.  .+.+++. .+.......+  ...+.-.|+|+| ..+.+....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG-~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDA-DAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCC-CceEEEecCcceEEEec
Confidence            46788899999654444432     243  4555554 2222222232  237788999998 445444322        


Q ss_pred             ----CcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee-cCCc
Q 018293          188 ----RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKA  262 (358)
Q Consensus       188 ----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~  262 (358)
                          +.+.+.++..++...   .....|..+.|+|++..++++.  +|.|++--+.....-. .. ......+.. -...
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~-l~~~~~l~~~l~~~  498 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YA-LTNPREVGPGLGDT  498 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-ee-ecccEEeecccCCc
Confidence                233333444333222   3456799999999877555544  4777773332211000 00 011112222 2334


Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEec--CCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEE
Q 018293          263 VCTISYNPLVPNLLATGSTDKMVKLWDL--SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE  331 (358)
Q Consensus       263 i~~i~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  331 (358)
                      +.++.|.+++ .+ +++..++.-.+|.+  ..... ..........++.+++-+++ . +++ ...+|.+.
T Consensus       499 ~~~l~W~~~~-~L-~V~~~~~~~~v~~v~vDG~~~-~~~~~~n~~~~v~~vaa~~~-~-iyv-~~~~g~~~  563 (591)
T PRK13616        499 AVSLDWRTGD-SL-VVGRSDPEHPVWYVNLDGSNS-DALPSRNLSAPVVAVAASPS-T-VYV-TDARAVLQ  563 (591)
T ss_pred             cccceEecCC-EE-EEEecCCCCceEEEecCCccc-cccCCCCccCceEEEecCCc-e-EEE-EcCCceEE
Confidence            6889999987 54 45555554445544  33221 11112223566777887764 3 444 56666443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.33  E-value=0.082  Score=45.16  Aligned_cols=99  Identities=13%  Similarity=0.115  Sum_probs=52.6

Q ss_pred             CCeEEEEECCCCceeeeecccc--cceeeEEEcC--CCCcEEEEEeCCCcEEEEEc-ccCCC----cc------------
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHT--DKVQAVAWNH--HSPQILLSGSFDRSVVMKDA-RISTH----SG------------  202 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~-~~~~~----~~------------  202 (358)
                      ..++.+||+.+.+.++++.-..  .....+.|..  +...-++.+....+|..|-- ..++-    +.            
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            4589999999999999886432  3456677754  34233444445555555433 22210    00            


Q ss_pred             -----ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCC
Q 018293          203 -----FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK  242 (358)
Q Consensus       203 -----~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~  242 (358)
                           .......-++.+..+.|+..+.+++-..|.|+.||+....
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence                 0011134578999999877666677789999999998864

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.26  E-value=0.0016  Score=36.59  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=30.4

Q ss_pred             CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          305 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       305 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      ...|..++|+|... ++|.+..+|.|.+|.+ +++.+
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcCc
Confidence            45699999999999 7999999999999999 66554

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.24  E-value=0.038  Score=50.35  Aligned_cols=173  Identities=11%  Similarity=0.047  Sum_probs=88.2

Q ss_pred             CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEe-----CCC--cEEEEEcccCCCccceeeecCCeeeEEE
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-----FDR--SVVMKDARISTHSGFKWAVAADVESLAW  216 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~  216 (358)
                      +|.+.-.+-..-.++.-..+....+.+.+++|++...+++..     .|.  .|.+++.  +...... ......+.-.|
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~l-t~g~~~t~PsW  404 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQV-LEGHSLTRPSW  404 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceee-ecCCCCCCceE
Confidence            666655442222233222233346788999999954444442     244  4445454  2222212 22334788899


Q ss_pred             cCCCCCeEEEEec-----------CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcE
Q 018293          217 DPHAEHSFVVSLE-----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  285 (358)
Q Consensus       217 ~~~~~~~~~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i  285 (358)
                      +|++..+.++...           .+.+.+.++..+         ....   .....|..+.|+||| ..++... ++.|
T Consensus       405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~g---------e~~~---~~~g~Issl~wSpDG-~RiA~i~-~g~v  470 (591)
T PRK13616        405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDAS---------AVAS---RVPGPISELQLSRDG-VRAAMII-GGKV  470 (591)
T ss_pred             CCCCCceEEEecCcceEEEeccCCCceEEEEeccCc---------hhhh---ccCCCcCeEEECCCC-CEEEEEE-CCEE
Confidence            9975533333211           123333344332         1111   234579999999999 4444433 4777


Q ss_pred             EE---EecCCCCceee---EecC-CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          286 KL---WDLSNNQPSCI---ASRN-PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       286 ~i---~d~~~~~~~~~---~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      .+   -....+.. .+   ..+. .-...+.++.|.+++. ++ .+..++.-.+|.+.
T Consensus       471 ~Va~Vvr~~~G~~-~l~~~~~l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        471 YLAVVEQTEDGQY-ALTNPREVGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             EEEEEEeCCCCce-eecccEEeecccCCccccceEecCCE-EE-EEecCCCCceEEEe
Confidence            76   44334431 11   1121 2233467899999998 44 34444444455543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.24  E-value=0.033  Score=48.93  Aligned_cols=159  Identities=13%  Similarity=0.253  Sum_probs=95.2

Q ss_pred             cceeeEEEcCCCCcEEEEEe--CCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC---CCeEEEEecCCeEEEEEccc
Q 018293          166 DKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA---EHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       166 ~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~dg~i~i~d~~~  240 (358)
                      .++..++|. ||.+.+++.-  .+|.+++=|..       ..+.-..|..+.|.|-+   ...+++--....|.+|.+..
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~-------viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK-------VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCcc-------EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            578889996 4435555543  23333332221       33445678899998842   22455556788999999974


Q ss_pred             CCCCCCCCCCCccEEEeec-----CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcC
Q 018293          241 AKSDPDSTSQQSSFTLHAH-----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE  315 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  315 (358)
                      .....    .+.+.....+     .---..+.|+|.. ..|++-.....=.+++++.........+ ...+.|.|.+|.+
T Consensus        92 s~~e~----~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~  165 (671)
T PF15390_consen   92 STTER----NKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTK  165 (671)
T ss_pred             Ccccc----ccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecC
Confidence            32211    1222221111     1123567899976 5666655544444667665543333334 4568899999999


Q ss_pred             CCCeEEEEEccCCeEEEEEccCC
Q 018293          316 DSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       316 ~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      ||+.++++.+..=.-++||-...
T Consensus       166 DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  166 DGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             cCCEEEEEeCCeEEEEEecCchh
Confidence            99977776676667788986544

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.20  E-value=0.071  Score=45.95  Aligned_cols=99  Identities=12%  Similarity=0.151  Sum_probs=60.3

Q ss_pred             CccccCCCceEEecCCCCeEEE---EEcccccCcCceeecCCcccccccccccCCceeccccccCCCc-ccEEEEecCCC
Q 018293           58 PLKDREKGNFMAVGSMEPAIEI---WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT-DSVLGLAWNKE  133 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~v---w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~  133 (358)
                      .+..+|++++||.+..+..+.+   |+...........                  .......+.... ..|+++.|-|-
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~------------------~~~~~g~l~~~~~e~ITsi~clpl   67 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTY------------------SISWSGPLDDEPGECITSILCLPL   67 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeE------------------EEEeeeeccCCCCCEEEEEEEEEe
Confidence            3445899999999988876665   5442211110000                  000011111111 45666655321


Q ss_pred             ----------CCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcC
Q 018293          134 ----------FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH  175 (358)
Q Consensus       134 ----------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~  175 (358)
                                +...++.|..+|.|++|. ++|.++..-.-|..+|..+....
T Consensus        68 ~s~~~s~~~~dw~~I~VG~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   68 SSQKRSTGGPDWTCIAVGTSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             ecccccCCCCCcEEEEEEecccEEEEEe-ccchHHHHHhcCccceEEEEecc
Confidence                      156899999999999998 57877766667899999998854

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.0024  Score=59.42  Aligned_cols=103  Identities=17%  Similarity=0.261  Sum_probs=73.0

Q ss_pred             CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec
Q 018293          222 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR  301 (358)
Q Consensus       222 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  301 (358)
                      ..++.|++.|.+...|+...        ..+...-..-.++|++++|+.+| .+++.|-.+|.|.+||+..+++......
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~n--------L~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGN--------LGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcc--------cchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcceeeeee
Confidence            36888999999999998764        12223333446899999999998 8999999999999999999886555444


Q ss_pred             CCC-CceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          302 NPK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       302 ~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      .++ ...|..+.+..++. .+.++...|.  +|.+.
T Consensus       171 ~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  171 HGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             cCCccceEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence            333 22344445555555 5778877776  56654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.17  E-value=0.12  Score=43.73  Aligned_cols=249  Identities=15%  Similarity=0.107  Sum_probs=117.0

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC---C
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---F  134 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~  134 (358)
                      +++|.|||++|++- ..|.|++++.+ +.........                    .............++++|+   +
T Consensus         6 ~~a~~pdG~l~v~e-~~G~i~~~~~~-g~~~~~v~~~--------------------~~v~~~~~~gllgia~~p~f~~n   63 (331)
T PF07995_consen    6 SMAFLPDGRLLVAE-RSGRIWVVDKD-GSLKTPVADL--------------------PEVFADGERGLLGIAFHPDFASN   63 (331)
T ss_dssp             EEEEETTSCEEEEE-TTTEEEEEETT-TEECEEEEE---------------------TTTBTSTTBSEEEEEE-TTCCCC
T ss_pred             EEEEeCCCcEEEEe-CCceEEEEeCC-CcCcceeccc--------------------ccccccccCCcccceeccccCCC
Confidence            34557899877765 49999999933 2211111100                    0123345667899999984   1


Q ss_pred             CcEEEEEEcC--------CeEEEEECCCC-------cee-eeecc---cccceeeEEEcCCCCcEEEEEeCCC-------
Q 018293          135 RNILASASAD--------KQVKIWDVAAG-------KCN-LTLEH---HTDKVQAVAWNHHSPQILLSGSFDR-------  188 (358)
Q Consensus       135 ~~~l~s~~~d--------g~v~iwd~~~~-------~~~-~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg-------  188 (358)
                      +.+.++.+..        ..|.-|....+       +.+ ..+..   ....-..|.|.|++ .+.++.+..+       
T Consensus        64 ~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~  142 (331)
T PF07995_consen   64 GYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQD  142 (331)
T ss_dssp             -EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCS
T ss_pred             CEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccc
Confidence            3333333321        23444444333       111 11121   23345679999999 6666655432       


Q ss_pred             ------cEEEEEcccCC----C-------ccceee-ecCCeeeEEEcCCCCCeEEE-EecCCeEEEEEcccCCCC-----
Q 018293          189 ------SVVMKDARIST----H-------SGFKWA-VAADVESLAWDPHAEHSFVV-SLEDGTIKGFDIRTAKSD-----  244 (358)
Q Consensus       189 ------~i~i~d~~~~~----~-------~~~~~~-~~~~i~~~~~~~~~~~~~~~-~~~dg~i~i~d~~~~~~~-----  244 (358)
                            .|.-.+....-    .       ...... --.-...++|+|..+.++++ -+.++.=.|.-+..+...     
T Consensus       143 ~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~  222 (331)
T PF07995_consen  143 PNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYC  222 (331)
T ss_dssp             TTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTB
T ss_pred             cccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCC
Confidence                  33333322110    0       000111 11224578999963434433 122332333333332210     


Q ss_pred             ---------------CCCCCCCccEEEeecCCceeEEEecCCC------CcEEEEEeCCCcEEEEecCCCCc-eeeEe-c
Q 018293          245 ---------------PDSTSQQSSFTLHAHDKAVCTISYNPLV------PNLLATGSTDKMVKLWDLSNNQP-SCIAS-R  301 (358)
Q Consensus       245 ---------------~~~~~~~~~~~~~~~~~~i~~i~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~-~~~~~-~  301 (358)
                                     .......+...+..| ..+..+.|.+..      +.++++.-..+.|....+..... ..... +
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  301 (331)
T PF07995_consen  223 EGGPKYSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL  301 (331)
T ss_dssp             SSSCSTTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC
T ss_pred             cCCCCCCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc
Confidence                           000112344445544 556777776422      14666665567788888764432 12222 2


Q ss_pred             CCCCceeEEEEEcCCCCeEEEEEccCCeEE
Q 018293          302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLE  331 (358)
Q Consensus       302 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  331 (358)
                      ......+..+++.|||. |+++-+.+|.|+
T Consensus       302 ~~~~~r~~~v~~~pDG~-Lyv~~d~~G~iy  330 (331)
T PF07995_consen  302 GGFGGRPRDVAQGPDGA-LYVSDDSDGKIY  330 (331)
T ss_dssp             TTSSS-EEEEEEETTSE-EEEEE-TTTTEE
T ss_pred             ccCCCCceEEEEcCCCe-EEEEECCCCeEe
Confidence            33445899999999998 677767788764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.15  E-value=0.01  Score=55.77  Aligned_cols=147  Identities=15%  Similarity=0.127  Sum_probs=92.4

Q ss_pred             ceeeEEEcCCCCcEEEE--EeCCCcEEEEEcccCCCcc-----------ceeeecCCeeeEEEcCCCCCeEEEEecCCeE
Q 018293          167 KVQAVAWNHHSPQILLS--GSFDRSVVMKDARISTHSG-----------FKWAVAADVESLAWDPHAEHSFVVSLEDGTI  233 (358)
Q Consensus       167 ~v~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~-----------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i  233 (358)
                      ++..+...+|+ ...++  .+.+-.|..||++.-....           ..........++.|+|.-....++...|+.|
T Consensus       102 pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            45555556665 33333  3344478899987543221           0111223466788999766677888899999


Q ss_pred             EEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCC-CceeEEEE
Q 018293          234 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-AGAVFSVA  312 (358)
Q Consensus       234 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~v~~~~  312 (358)
                      ++..+....        .....+ ......++++|+|.| ..++.|-..|++.-|...-.....+...... ...|.+++
T Consensus       181 ~V~~~~~~~--------~~v~s~-p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~  250 (1405)
T KOG3630|consen  181 RVKSTKQLA--------QNVTSF-PVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVT  250 (1405)
T ss_pred             hhhhhhhhh--------hhhccc-CcccceeeEEecccc-ceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEE
Confidence            998876542        222222 234568999999998 8899999999999887654321111111111 46799999


Q ss_pred             EcCCCCeEEEEE
Q 018293          313 FSEDSPFVLAIG  324 (358)
Q Consensus       313 ~~~~~~~~l~~~  324 (358)
                      |.....++++-+
T Consensus       251 Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  251 WLSTQEFLVVYG  262 (1405)
T ss_pred             EecceeEEEEec
Confidence            998887654444

>PHA03098 kelch-like protein; Provisional

Probab=97.15  E-value=0.021  Score=51.93  Aligned_cols=186  Identities=15%  Similarity=0.146  Sum_probs=87.3

Q ss_pred             CcEEEEEEcCC------eEEEEECCCCceeee--ecccccceeeEEEcCCCCcEEEEEeCCC-----cEEEEEcccCCCc
Q 018293          135 RNILASASADK------QVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHS  201 (358)
Q Consensus       135 ~~~l~s~~~dg------~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~  201 (358)
                      +.+++.|+.++      .+..||..+.+....  +.........+..  ++ .+++.|+.++     .+..||..+.+-.
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NN-RIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CC-EEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            34666666543      577888877654221  1111111222222  34 6777777653     4667777654321


Q ss_pred             cce-eeecCCeeeEEEcCCCCCeEEEEecC------CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc
Q 018293          202 GFK-WAVAADVESLAWDPHAEHSFVVSLED------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  274 (358)
Q Consensus       202 ~~~-~~~~~~i~~~~~~~~~~~~~~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  274 (358)
                      ... ......-.+++..  ++.+++.|+.+      ..+..||..+.+-..       ...+...... .+++.. ++ .
T Consensus       372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-------~~~~p~~r~~-~~~~~~-~~-~  439 (534)
T PHA03098        372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSK-------GSPLPISHYG-GCAIYH-DG-K  439 (534)
T ss_pred             eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeee-------cCCCCccccC-ceEEEE-CC-E
Confidence            100 0011111112222  34566666632      457888887653211       1111111111 122222 23 5


Q ss_pred             EEEEEeCCC--------cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC-----CeEEEEEccCC
Q 018293          275 LLATGSTDK--------MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSD  338 (358)
Q Consensus       275 ~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~  338 (358)
                      +++.|+.++        .+.+||..+.+...+............+.+  ++. +++.||.+     +.+.+||..+.
T Consensus       440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCCC
Confidence            666666432        388899988764333222211111112222  555 67777754     47888988764

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.12  E-value=0.0023  Score=35.93  Aligned_cols=35  Identities=14%  Similarity=0.307  Sum_probs=29.8

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC  157 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  157 (358)
                      ....|.+++|+|. ..+||.+..+|.|.++.+ +++.
T Consensus        10 l~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPT-MDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCC-CCEEEEEECCCeEEEEEC-CCcC
Confidence            3456999999999 679999999999999998 4543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.06  E-value=0.037  Score=48.64  Aligned_cols=152  Identities=14%  Similarity=0.186  Sum_probs=91.4

Q ss_pred             ccEEEEecCCCCCcEEEEEE--cCCeEEEEECCCCceeeeecccccceeeEEEcCCC---CcEEEEEeCCCcEEEEEccc
Q 018293          123 DSVLGLAWNKEFRNILASAS--ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS---PQILLSGSFDRSVVMKDARI  197 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~  197 (358)
                      .+|..++|.. |...+++.-  .+|.+++=|   .+.+..|    ..|..+.|.|-+   ...+++......|.+|.+..
T Consensus        20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            4688899974 355666553  344444322   2334444    358899998853   13566777888999999863


Q ss_pred             CC--Cccceee----ecC----CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEE
Q 018293          198 ST--HSGFKWA----VAA----DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS  267 (358)
Q Consensus       198 ~~--~~~~~~~----~~~----~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  267 (358)
                      ..  .......    ...    -...+.|+|... .+++-+....-.+++++...        ..+..-....+.|.|.+
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~--------srVkaDi~~~G~IhCAC  162 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDS--------SRVKADIKTSGLIHCAC  162 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCC--------ceEEEeccCCceEEEEE
Confidence            21  1111111    111    235678999544 66665555444567777652        22322224467899999


Q ss_pred             ecCCCCcEEEEEeCCCcEEEEecC
Q 018293          268 YNPLVPNLLATGSTDKMVKLWDLS  291 (358)
Q Consensus       268 ~~~~~~~~l~~~~~dg~i~i~d~~  291 (358)
                      |.+||.+++++.+..=.-++||-.
T Consensus       163 WT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  163 WTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ecCcCCEEEEEeCCeEEEEEecCc
Confidence            999997666666655557788854

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.03  E-value=0.066  Score=42.68  Aligned_cols=156  Identities=11%  Similarity=0.075  Sum_probs=94.9

Q ss_pred             CceeeeecccccceeeEEEcCCCCcEEEEEeCCCc-EEEEEcccCCCccceeeecCC--eeeEEEcCCCCCeEEEEe---
Q 018293          155 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS-VVMKDARISTHSGFKWAVAAD--VESLAWDPHAEHSFVVSL---  228 (358)
Q Consensus       155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~---  228 (358)
                      |+++.... .......+.|+|..+.-++.+-.-|+ ..++|....+........+..  .-.=.|+|++. ++++.-   
T Consensus        58 Gk~v~~~~-lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-~LYATEndf  135 (366)
T COG3490          58 GKIVFATA-LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-LLYATENDF  135 (366)
T ss_pred             Cceeeeee-cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc-EEEeecCCC
Confidence            44443332 23445568888887777777776665 567888877665533322221  22346889765 444432   


Q ss_pred             --cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC------------------CCcEEEE
Q 018293          229 --EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST------------------DKMVKLW  288 (358)
Q Consensus       229 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~------------------dg~i~i~  288 (358)
                        ..|.|-+||.+..        .+.+-.+..|.-.-..+.+.+|| +.++.+..                  .-.+.+.
T Consensus       136 d~~rGViGvYd~r~~--------fqrvgE~~t~GiGpHev~lm~DG-rtlvvanGGIethpdfgR~~lNldsMePSlvll  206 (366)
T COG3490         136 DPNRGVIGVYDAREG--------FQRVGEFSTHGIGPHEVTLMADG-RTLVVANGGIETHPDFGRTELNLDSMEPSLVLL  206 (366)
T ss_pred             CCCCceEEEEecccc--------cceecccccCCcCcceeEEecCC-cEEEEeCCceecccccCccccchhhcCccEEEE
Confidence              2478999999966        36677778887777889999999 55554321                  0123334


Q ss_pred             ecCCCCceeeEecC--CCCceeEEEEEcCCCCeEEE
Q 018293          289 DLSNNQPSCIASRN--PKAGAVFSVAFSEDSPFVLA  322 (358)
Q Consensus       289 d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~  322 (358)
                      |..+++.+...++.  .+...|..++..+||. +++
T Consensus       207 d~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwf  241 (366)
T COG3490         207 DAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWF  241 (366)
T ss_pred             eccccchhhhccCchhhhhcceeeeeeCCCCc-EEE
Confidence            44444443333343  3455688888888887 344

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.01  E-value=0.12  Score=41.24  Aligned_cols=189  Identities=11%  Similarity=0.050  Sum_probs=101.4

Q ss_pred             cccCCCceEEecCCC-----CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293           60 KDREKGNFMAVGSME-----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF  134 (358)
Q Consensus        60 ~~s~~~~~l~~g~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  134 (358)
                      .|||||.+|...-.|     |.|-|||...                          ....+..+..|.-....+.|.+||
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~--------------------------~fqrvgE~~t~GiGpHev~lm~DG  173 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDARE--------------------------GFQRVGEFSTHGIGPHEVTLMADG  173 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEeccc--------------------------ccceecccccCCcCcceeEEecCC
Confidence            469999999765433     7899999862                          222333445566677788899995


Q ss_pred             CcEEEEEEc------------------CCeEEEEECCCCceeeee--c--ccccceeeEEEcCCCCcEEEEEeCCCc---
Q 018293          135 RNILASASA------------------DKQVKIWDVAAGKCNLTL--E--HHTDKVQAVAWNHHSPQILLSGSFDRS---  189 (358)
Q Consensus       135 ~~~l~s~~~------------------dg~v~iwd~~~~~~~~~~--~--~~~~~v~~~~~~~~~~~~l~~~~~dg~---  189 (358)
                      . .++.+..                  .-++.+.|..+|+++...  .  .+...+..++..+++ ..++.+-..|.   
T Consensus       174 r-tlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d  251 (366)
T COG3490         174 R-TLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRND  251 (366)
T ss_pred             c-EEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC-cEEEEEEeeCCCcc
Confidence            5 4444321                  112333444444443222  1  234567778888777 54444332221   


Q ss_pred             --EEEEEcccCCCccc-------eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecC
Q 018293          190 --VVMKDARISTHSGF-------KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD  260 (358)
Q Consensus       190 --i~i~d~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  260 (358)
                        -.+=-...++....       .......|-+++.+.+.+...+++-..+...+||..++.         .+....  -
T Consensus       252 ~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~---------vv~~a~--l  320 (366)
T COG3490         252 LPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA---------VVSEAA--L  320 (366)
T ss_pred             CCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc---------EEeccc--c
Confidence              11111111221111       112335677888887666555556566778899999873         222111  1


Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEec
Q 018293          261 KAVCTISYNPLVPNLLATGSTDKMVKLWDL  290 (358)
Q Consensus       261 ~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~  290 (358)
                      .....++-..   .-+++.+.+|.+.++.-
T Consensus       321 ~daaGva~~~---~gf~vssg~G~~~~~s~  347 (366)
T COG3490         321 PDAAGVAAAK---GGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             cccccceecc---CceEEecCCceEEeccc
Confidence            1233344333   23555566888888753

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.01  E-value=0.15  Score=41.97  Aligned_cols=152  Identities=13%  Similarity=0.114  Sum_probs=90.3

Q ss_pred             CcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce----------
Q 018293          135 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK----------  204 (358)
Q Consensus       135 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------  204 (358)
                      ++.|+.|+.+| +.+++.........+. +...|..+...++- +.+++-+ |+.+.++++..-......          
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            56888998888 8999983332222222 23349999999887 4454444 599999998765443311          


Q ss_pred             ----eeecCCeeeEE-EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE
Q 018293          205 ----WAVAADVESLA-WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  279 (358)
Q Consensus       205 ----~~~~~~i~~~~-~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~  279 (358)
                          ......+..++ -....+...++......|.+|.........    ......+. -...+.+++|.+   +.++.|
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f----~~~~ke~~-lp~~~~~i~~~~---~~i~v~  154 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSF----SKLLKEIS-LPDPPSSIAFLG---NKICVG  154 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccc----cceeEEEE-cCCCcEEEEEeC---CEEEEE
Confidence                11223344444 112233344444456699999988742100    01223332 346788999994   567777


Q ss_pred             eCCCcEEEEecCCCCceeeE
Q 018293          280 STDKMVKLWDLSNNQPSCIA  299 (358)
Q Consensus       280 ~~dg~i~i~d~~~~~~~~~~  299 (358)
                      ..+ ...+.|+.++....+.
T Consensus       155 ~~~-~f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  155 TSK-GFYLIDLNTGSPSELL  173 (275)
T ss_pred             eCC-ceEEEecCCCCceEEe
Confidence            654 4888999987754443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA03098 kelch-like protein; Provisional

Probab=96.99  E-value=0.078  Score=48.30  Aligned_cols=148  Identities=11%  Similarity=0.087  Sum_probs=69.6

Q ss_pred             CcEEEEEEcC-----CeEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeCC------CcEEEEEcccCCCc
Q 018293          135 RNILASASAD-----KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHS  201 (358)
Q Consensus       135 ~~~l~s~~~d-----g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~  201 (358)
                      +.+++.|+.+     ..+..||..+.+-..  .+...... .+++. -++ .+++.|+.+      ..+..||..+.+-.
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            4577777765     357788887664322  11111111 11222 233 667777632      35788888765321


Q ss_pred             cce--eeecCCeeeEEEcCCCCCeEEEEecC--------CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC
Q 018293          202 GFK--WAVAADVESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  271 (358)
Q Consensus       202 ~~~--~~~~~~i~~~~~~~~~~~~~~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  271 (358)
                      ...  ....... ++...  ++.+++.|+.+        ..+.+||..+.+-..       +..+.........+.+  +
T Consensus       420 ~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~-------~~~~~~~r~~~~~~~~--~  487 (534)
T PHA03098        420 KGSPLPISHYGG-CAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE-------LSSLNFPRINASLCIF--N  487 (534)
T ss_pred             ecCCCCccccCc-eEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCceee-------CCCCCcccccceEEEE--C
Confidence            110  0001111 22222  34466666543        237888887653211       1111111111112222  3


Q ss_pred             CCcEEEEEeCC-----CcEEEEecCCCCceee
Q 018293          272 VPNLLATGSTD-----KMVKLWDLSNNQPSCI  298 (358)
Q Consensus       272 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~  298 (358)
                      + .+++.|+.+     ..+.+||..+.+....
T Consensus       488 ~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~  518 (534)
T PHA03098        488 N-KIYVVGGDKYEYYINEIEVYDDKTNTWTLF  518 (534)
T ss_pred             C-EEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence            4 677777654     4688898887764333

>PHA02790 Kelch-like protein; Provisional

Probab=96.88  E-value=0.057  Score=48.30  Aligned_cols=182  Identities=10%  Similarity=0.020  Sum_probs=86.2

Q ss_pred             CcEEEEEEcCC-----eEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeCC--CcEEEEEcccCCCcc--c
Q 018293          135 RNILASASADK-----QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMKDARISTHSG--F  203 (358)
Q Consensus       135 ~~~l~s~~~dg-----~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~--~  203 (358)
                      +.+++.|+.++     .+..||..+++...  .+....... +++. -++ .+.+.|+.+  ..+..||..+++-..  .
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~-~~~-~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVP-ANN-KLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEE-ECC-EEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            44667777543     57778887764322  222111111 2222 244 677777754  357778865442111  0


Q ss_pred             eeeecCCeeeEEEcCCCCCeEEEEecCC---eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe
Q 018293          204 KWAVAADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       204 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~  280 (358)
                      ..........+..   ++.+.+.|+.++   .+..||.++..-       .....+.........+.+  ++ .+.+.| 
T Consensus       349 l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W-------~~~~~m~~~r~~~~~~~~--~~-~IYv~G-  414 (480)
T PHA02790        349 LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQW-------QFGPSTYYPHYKSCALVF--GR-RLFLVG-  414 (480)
T ss_pred             CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEE-------EeCCCCCCccccceEEEE--CC-EEEEEC-
Confidence            1111111122222   355677776543   467788765421       111011111111112222  23 555665 


Q ss_pred             CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC-----CeEEEEEccCC
Q 018293          281 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSD  338 (358)
Q Consensus       281 ~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~  338 (358)
                        |.+.+||..+++...+.......... +++. -+|+ +++.||.+     ..+..||..++
T Consensus       415 --G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~-IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        415 --RNAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNK-LLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             --CceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCE-EEEECCcCCCcccceEEEEECCCC
Confidence              35788999887754433332212222 2222 2555 78888764     35778887654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.87  E-value=0.032  Score=52.72  Aligned_cols=145  Identities=12%  Similarity=0.111  Sum_probs=90.0

Q ss_pred             cEEEEecCCCCCcEEEE--EEcCCeEEEEECCCCceee-----------eecccccceeeEEEcCCCCcEEEEEeCCCcE
Q 018293          124 SVLGLAWNKEFRNILAS--ASADKQVKIWDVAAGKCNL-----------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSV  190 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s--~~~dg~v~iwd~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  190 (358)
                      .|..+...+| ....++  .+.+-.|..||+++-..-.           +.........++.|+|.-+...+....|+.|
T Consensus       102 pi~~~v~~~D-~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFHD-ATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEeccC-CceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            4555555566 333322  2333478889987542211           1111234456789998776677888899999


Q ss_pred             EEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee-cCCceeEEEec
Q 018293          191 VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYN  269 (358)
Q Consensus       191 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~  269 (358)
                      ++..+................++++|+|. +..+++|...|++.-|...-...       ..+..... ....|.+++|-
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSpr-GKQl~iG~nnGt~vQy~P~leik-------~~ip~Pp~~e~yrvl~v~Wl  252 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPR-GKQLFIGRNNGTEVQYEPSLEIK-------SEIPEPPVEENYRVLSVTWL  252 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccc-cceeeEecCCCeEEEeeccccee-------ecccCCCcCCCcceeEEEEe
Confidence            99887655544444566778999999995 56899999999998887653311       00000111 14678999998


Q ss_pred             CCCCcEEEE
Q 018293          270 PLVPNLLAT  278 (358)
Q Consensus       270 ~~~~~~l~~  278 (358)
                      ... .+++.
T Consensus       253 ~t~-eflvv  260 (1405)
T KOG3630|consen  253 STQ-EFLVV  260 (1405)
T ss_pred             cce-eEEEE
Confidence            755 44443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.74  E-value=0.42  Score=43.30  Aligned_cols=56  Identities=9%  Similarity=0.070  Sum_probs=38.7

Q ss_pred             eEEEEECCCCceeeeecccccc---------eeeEEEcCCCC--cEEEEEeCCCcEEEEEcccCCCc
Q 018293          146 QVKIWDVAAGKCNLTLEHHTDK---------VQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHS  201 (358)
Q Consensus       146 ~v~iwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~  201 (358)
                      .|.-.|+++|+....++.....         ..-+....++.  ..++.+.++|.+.+.|.++++.+
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            6777899999988777642221         12223334553  47889999999999999988763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.69  E-value=0.18  Score=39.10  Aligned_cols=103  Identities=18%  Similarity=0.218  Sum_probs=63.1

Q ss_pred             cCCCc-eEEecCCCCeEEEEE--cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           62 REKGN-FMAVGSMEPAIEIWD--LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        62 s~~~~-~l~~g~~dg~i~vw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      +.+.+ +.++-+.+-+|.-||  ..+++...+..+..-             ++..+...+.     .-.++...+ +++.
T Consensus       166 d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dl-------------rk~~~~e~~~-----PDGm~ID~e-G~L~  226 (310)
T KOG4499|consen  166 DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDL-------------RKSQPFESLE-----PDGMTIDTE-GNLY  226 (310)
T ss_pred             cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEe-------------ccCCCcCCCC-----CCcceEccC-CcEE
Confidence            55654 445667777887788  555555443322210             0001111111     112223444 6678


Q ss_pred             EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEE
Q 018293          139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLS  183 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  183 (358)
                      ++.-..++|...|..+|+.+.++.-....+++++|--.+-..+++
T Consensus       227 Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yv  271 (310)
T KOG4499|consen  227 VATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYV  271 (310)
T ss_pred             EEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence            888888999999999999999998888999999996543234443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.58  E-value=0.69  Score=43.74  Aligned_cols=205  Identities=15%  Similarity=0.128  Sum_probs=108.9

Q ss_pred             EEEEEEcCCeEEEEECCCCceeeeeccccc--------ceeeEEEcCC---------------CCcEEEEEeCCCcEEEE
Q 018293          137 ILASASADKQVKIWDVAAGKCNLTLEHHTD--------KVQAVAWNHH---------------SPQILLSGSFDRSVVMK  193 (358)
Q Consensus       137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--------~v~~~~~~~~---------------~~~~l~~~~~dg~i~i~  193 (358)
                      .++.++.++.|.-.|.++|+.+.++.....        ..+.+.+...               ....++.++.|+.+.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            677778889999999999998887753221        1122333211               12467888889999999


Q ss_pred             EcccCCCccceeeecCCe-------------eeEEEcCC-CCCeEEEEec----------CCeEEEEEcccCCCCCCCCC
Q 018293          194 DARISTHSGFKWAVAADV-------------ESLAWDPH-AEHSFVVSLE----------DGTIKGFDIRTAKSDPDSTS  249 (358)
Q Consensus       194 d~~~~~~~~~~~~~~~~i-------------~~~~~~~~-~~~~~~~~~~----------dg~i~i~d~~~~~~~~~~~~  249 (358)
                      |.++++..... ...+.+             ..+.-.|- .+..+++|+.          +|.|+-+|.++++.......
T Consensus       276 DA~TGk~~W~f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~  354 (764)
T TIGR03074       276 DADTGKLCEDF-GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP  354 (764)
T ss_pred             ECCCCCEEEEe-cCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence            99888765321 111111             00111110 1235666643          68899999999853221100


Q ss_pred             CCcc--------EEEe-ecCCceeEEEecCCCCcEEEEEe------------------CCCcEEEEecCCCCceeeEecC
Q 018293          250 QQSS--------FTLH-AHDKAVCTISYNPLVPNLLATGS------------------TDKMVKLWDLSNNQPSCIASRN  302 (358)
Q Consensus       250 ~~~~--------~~~~-~~~~~i~~i~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~~~  302 (358)
                      ..+.        .... +....-...++.|.. .+++.+.                  ..+.|.-.|.++++..-.+...
T Consensus       355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~-glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~  433 (764)
T TIGR03074       355 GNPDPTAPPAPGETYTRNTPNSWSVASYDEKL-GLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV  433 (764)
T ss_pred             CCCCcccCCCCCCEeccCCCCccCceEEcCCC-CeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence            0000        0000 000111223444433 2322211                  2345667788888754333333


Q ss_pred             CCCc-------eeEEEEEcC-CCC--eEEEEEccCCeEEEEEccCCCcccc
Q 018293          303 PKAG-------AVFSVAFSE-DSP--FVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       303 ~~~~-------~v~~~~~~~-~~~--~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      .|..       ...-+.+.. +|+  -+++.++.+|.+.+.|.++|+.+..
T Consensus       434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            3311       111122222 442  2588899999999999999998764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.56  E-value=0.0061  Score=55.86  Aligned_cols=148  Identities=15%  Similarity=0.177  Sum_probs=87.4

Q ss_pred             ceEEEEEEeccCCC-CCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcc
Q 018293           20 SHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGID   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~   98 (358)
                      +.+-||..+.-+++ .+.+.++-..+....+--+.|.++    -++.-++..+-.++.|++..+++...           
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~----~~~~~~ic~~~~~~~i~lL~~~ra~~-----------  217 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPI----AVNKVYICYGLKGGEIRLLNINRALR-----------  217 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeeccc----ccccceeeeccCCCceeEeeechHHH-----------
Confidence            44445555554443 356666666666666677888776    45668888999999999988764221           


Q ss_pred             cccccccccCCceeccccccCCCcccEEEEe-----------cCCCCCcEEEEEEcCCeEEEEECC-----CCceeeeec
Q 018293           99 EEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA-----------WNKEFRNILASASADKQVKIWDVA-----AGKCNLTLE  162 (358)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-----------~~~~~~~~l~s~~~dg~v~iwd~~-----~~~~~~~~~  162 (358)
                                       ..+.+|...+..++           .+|| +..++.++.||.++.|.+.     ...++...+
T Consensus       218 -----------------~l~rsHs~~~~d~a~~~~g~~~l~~lSpD-Gtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk  279 (1283)
T KOG1916|consen  218 -----------------SLFRSHSQRVTDMAFFAEGVLKLASLSPD-GTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK  279 (1283)
T ss_pred             -----------------HHHHhcCCCcccHHHHhhchhhheeeCCC-CcEEEEeecCCccceeeeeeeccccHhhhhccC
Confidence                             12234665555554           4788 6788888899988888764     224555666


Q ss_pred             cccc-ceeeEEEcCCCC--------cEEEEE-eCCCcEEEEEcccCCC
Q 018293          163 HHTD-KVQAVAWNHHSP--------QILLSG-SFDRSVVMKDARISTH  200 (358)
Q Consensus       163 ~~~~-~v~~~~~~~~~~--------~~l~~~-~~dg~i~i~d~~~~~~  200 (358)
                      .|+. +-.|.-++.+..        .+++++ ..+..+++|....-++
T Consensus       280 phd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C  327 (1283)
T KOG1916|consen  280 PHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC  327 (1283)
T ss_pred             CCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence            6663 322322332210        123333 3345577777554444

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.53  E-value=0.72  Score=43.25  Aligned_cols=80  Identities=20%  Similarity=0.175  Sum_probs=53.3

Q ss_pred             cccEEEEecCCCCCcEEEEEEcCCeEEEEECC---------CCce--e-eee--------cccccceeeEEEcCCC--Cc
Q 018293          122 TDSVLGLAWNKEFRNILASASADKQVKIWDVA---------AGKC--N-LTL--------EHHTDKVQAVAWNHHS--PQ  179 (358)
Q Consensus       122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~---------~~~~--~-~~~--------~~~~~~v~~~~~~~~~--~~  179 (358)
                      ...|..|.++|+ +.+++..+..|.+.+.=.+         .++.  . +++        ......|..+.|+|.+  +.
T Consensus        84 ~f~v~~i~~n~~-g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPT-GSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCC-CCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            457999999999 5677777776644433222         1111  1 111        1344678899999974  47


Q ss_pred             EEEEEeCCCcEEEEEcccCCCcc
Q 018293          180 ILLSGSFDRSVVMKDARISTHSG  202 (358)
Q Consensus       180 ~l~~~~~dg~i~i~d~~~~~~~~  202 (358)
                      .|++-..|+++++||+.......
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~~p~  185 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQHPW  185 (717)
T ss_pred             eEEEEecCCEEEEEecCCCCCCe
Confidence            88899999999999997655433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.51  E-value=0.32  Score=38.98  Aligned_cols=186  Identities=11%  Similarity=0.088  Sum_probs=105.0

Q ss_pred             cEEEEecCCCCCcEEEEEEcCC--eEEEEECCCCceeeeecccc-cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293          124 SVLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  200 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  200 (358)
                      --..+.|..+ +.++-+.+.-|  .|+.+|+.+++......-.. .--..++...+  .+..-.-.++...+||..+.+.
T Consensus        46 FTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   46 FTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTEE
T ss_pred             cCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccceE
Confidence            3557777655 55777776666  79999999998765553211 12233444433  5566667789999999987665


Q ss_pred             ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee--cC---CceeEEEecCCCCcE
Q 018293          201 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HD---KAVCTISYNPLVPNL  275 (358)
Q Consensus       201 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~---~~i~~i~~~~~~~~~  275 (358)
                      .. .......-..++..  + ..++.+.....++++|..+.         .....+..  ..   ..++.+.+.. | .+
T Consensus       123 ~~-~~~y~~EGWGLt~d--g-~~Li~SDGS~~L~~~dP~~f---------~~~~~i~V~~~g~pv~~LNELE~i~-G-~I  187 (264)
T PF05096_consen  123 IG-TFPYPGEGWGLTSD--G-KRLIMSDGSSRLYFLDPETF---------KEVRTIQVTDNGRPVSNLNELEYIN-G-KI  187 (264)
T ss_dssp             EE-EEE-SSS--EEEEC--S-SCEEEE-SSSEEEEE-TTT----------SEEEEEE-EETTEE---EEEEEEET-T-EE
T ss_pred             EE-EEecCCcceEEEcC--C-CEEEEECCccceEEECCccc---------ceEEEEEEEECCEECCCcEeEEEEc-C-EE
Confidence            54 33444566666632  3 35666666778999998765         23333222  11   2345566652 3 33


Q ss_pred             EEEEeCCCcEEEEecCCCCceeeEecC-------------CCCceeEEEEEcCCCCeEEEEEccC
Q 018293          276 LATGSTDKMVKLWDLSNNQPSCIASRN-------------PKAGAVFSVAFSEDSPFVLAIGGSK  327 (358)
Q Consensus       276 l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~l~~~~~d  327 (358)
                      .|=.=....|...|..+++......+.             ......+.|++.|....+++||-.=
T Consensus       188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~W  252 (264)
T PF05096_consen  188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLW  252 (264)
T ss_dssp             EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-
T ss_pred             EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCC
Confidence            333333555667777777643222111             1135688999999888788888543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.28  E-value=0.52  Score=39.00  Aligned_cols=160  Identities=11%  Similarity=0.162  Sum_probs=76.5

Q ss_pred             cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293          162 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  241 (358)
Q Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~  241 (358)
                      ..-...+..+.-++++ .+++++.....+.-||--...-..........+..+.|.|++. +.+ ....|.|++=+....
T Consensus       141 ~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  141 SETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDD  217 (302)
T ss_dssp             -S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTE
T ss_pred             cCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCC
Confidence            3345678888888998 7777766555555676543333333344567899999999643 434 448888888772211


Q ss_pred             CCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe-cCCCCceeEEEEEcCCCCeE
Q 018293          242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFV  320 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~  320 (358)
                      ....    .+....+....-.+..++|.+++ ...++|+ .|.+ +.....++.-.... ...-...+..+.|.++.+ -
T Consensus       218 ~~~w----~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-g  289 (302)
T PF14870_consen  218 GETW----SEPIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-G  289 (302)
T ss_dssp             EEEE-------B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE-E
T ss_pred             cccc----ccccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc-e
Confidence            0000    00011111122347889999876 5555554 5544 34555555222111 223345688888877655 3


Q ss_pred             EEEEccCCeEEEE
Q 018293          321 LAIGGSKGKLEIW  333 (358)
Q Consensus       321 l~~~~~dg~i~vw  333 (358)
                      ++ -+.+|.|.-|
T Consensus       290 f~-lG~~G~ll~~  301 (302)
T PF14870_consen  290 FV-LGQDGVLLRY  301 (302)
T ss_dssp             EE-E-STTEEEEE
T ss_pred             EE-ECCCcEEEEe
Confidence            55 4678887655

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.22  E-value=1.1  Score=42.33  Aligned_cols=185  Identities=15%  Similarity=0.139  Sum_probs=105.3

Q ss_pred             cEEEEEEcCCeEEEEECCCCce--eeeecccccceeeEEEcCCCCcEEEEEeCC--------------CcEEEEEcccCC
Q 018293          136 NILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFD--------------RSVVMKDARIST  199 (358)
Q Consensus       136 ~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~  199 (358)
                      ..++++. .+.+++.-+..-+.  ++++. -......+++.+.. ..+.+.+..              ..++++|-++.+
T Consensus       685 d~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~  761 (1096)
T KOG1897|consen  685 DSLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE  761 (1096)
T ss_pred             ceEEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence            3455554 35677776654322  23333 23445667777643 333333321              135556655544


Q ss_pred             Cccce-e---eecCCeeeEEEcCCCCCeEEEEec----------CCeEEEEEcccCCCCCCCCCCCccEEEeec--CCce
Q 018293          200 HSGFK-W---AVAADVESLAWDPHAEHSFVVSLE----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAV  263 (358)
Q Consensus       200 ~~~~~-~---~~~~~i~~~~~~~~~~~~~~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i  263 (358)
                      ..... .   .....+.++.|..+.+.++++|+.          .|.|.+|.....         ..+.....+  .+.+
T Consensus       762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~---------~~L~~v~e~~v~Gav  832 (1096)
T KOG1897|consen  762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL---------NSLELVAETVVKGAV  832 (1096)
T ss_pred             EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC---------Cceeeeeeeeeccce
Confidence            32211 1   112245566688776778888753          578888888773         222222222  3455


Q ss_pred             eEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          264 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       264 ~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      .++..-. | +++|.  -...|++|+..+.+  .+..-..+..++..+...-.|.. ++.|..-+.+.+...+..+
T Consensus       833 ~aL~~fn-g-kllA~--In~~vrLye~t~~~--eLr~e~~~~~~~~aL~l~v~gde-I~VgDlm~Sitll~y~~~e  901 (1096)
T KOG1897|consen  833 YALVEFN-G-KLLAG--INQSVRLYEWTTER--ELRIECNISNPIIALDLQVKGDE-IAVGDLMRSITLLQYKGDE  901 (1096)
T ss_pred             eehhhhC-C-eEEEe--cCcEEEEEEccccc--eehhhhcccCCeEEEEEEecCcE-EEEeeccceEEEEEEeccC
Confidence            5555443 3 55543  35689999998886  34445566778888888888885 7778887877776555444

>PRK10115 protease 2; Provisional

Probab=96.13  E-value=1.2  Score=41.88  Aligned_cols=199  Identities=7%  Similarity=0.012  Sum_probs=95.8

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCC----eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCC-----CcEEEE
Q 018293          123 DSVLGLAWNKEFRNILASASADK----QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMK  193 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~  193 (358)
                      -.+..+.|+|++..+.++.+.+|    .+++.|+.+++.+...-....  ..++|.+++..++++...+     ..|..+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            45778899999553334433333    588999988864322211111  4599999985555555432     357777


Q ss_pred             EcccCC--CccceeeecCCeeeEEEcC-CCCCeEEEEe--cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEe
Q 018293          194 DARIST--HSGFKWAVAADVESLAWDP-HAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY  268 (358)
Q Consensus       194 d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  268 (358)
                      ++.++.  .............-..+.+ ++..+++...  .++.+.+++......       .....+.........+. 
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~-  276 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA-------EPFVFLPRRKDHEYSLD-  276 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC-------CceEEEECCCCCEEEEE-
Confidence            777663  2221222222233223333 4443343322  245788888543211       11111211112222222 


Q ss_pred             cCCCCcEEEEEeC-CCc--EEEEecCC-CCceeeEecCC-CCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          269 NPLVPNLLATGST-DKM--VKLWDLSN-NQPSCIASRNP-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       269 ~~~~~~~l~~~~~-dg~--i~i~d~~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      +..+ .+++.... ...  |...++.. .+...+  +.. ....|..+.+..  .+++++...+|.-+++-+.
T Consensus       277 ~~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l--~~~~~~~~i~~~~~~~--~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        277 HYQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEEL--IPPRENIMLEGFTLFT--DWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             eCCC-EEEEEEcCCCCCceEEEecCCCcccCeEE--ECCCCCCEEEEEEEEC--CEEEEEEEeCCEEEEEEEc
Confidence            2222 33332222 122  43444442 222122  222 234688888873  3577777778876665544

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.13  E-value=0.81  Score=39.76  Aligned_cols=152  Identities=14%  Similarity=0.191  Sum_probs=85.1

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecC---CCCCcEEEE
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN---KEFRNILAS  140 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~~l~s  140 (358)
                      +...+++|+.+|.++||+-...+......++                       ...-+.+|..++.-   +......++
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lll-----------------------E~~l~~PILqv~~G~F~s~~~~~~La   92 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLL-----------------------ETQLKDPILQVECGKFVSGSEDLQLA   92 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEE-----------------------EEecCCcEEEEEeccccCCCCcceEE
Confidence            4678999999999999998543322111111                       11234567766542   221223333


Q ss_pred             EEcCCeEEEEECCC--Cc-------eeeeecccc--cceeeEEEcC----CCCcEEEEEeCCCcEEEEEcccCCCcccee
Q 018293          141 ASADKQVKIWDVAA--GK-------CNLTLEHHT--DKVQAVAWNH----HSPQILLSGSFDRSVVMKDARISTHSGFKW  205 (358)
Q Consensus       141 ~~~dg~v~iwd~~~--~~-------~~~~~~~~~--~~v~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  205 (358)
                      .-.-..+.+|.+..  +.       .+..+..|.  .....++.-|    .+..++.+-+.||.+.+++-+........ 
T Consensus        93 VLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l-  171 (418)
T PF14727_consen   93 VLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL-  171 (418)
T ss_pred             EecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc-
Confidence            35567788887731  11       112222222  2233344433    22367888899999999997654322211 


Q ss_pred             eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          206 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       206 ~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      ...--...+.+.+ ....|++++.+..+..|....
T Consensus       172 p~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~  205 (418)
T PF14727_consen  172 PDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQD  205 (418)
T ss_pred             CCCCCCcCeEEee-cCCEEEEecCceeEEEecHHH
Confidence            1122234466667 345788888888999888754

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.01  E-value=0.52  Score=43.09  Aligned_cols=178  Identities=11%  Similarity=0.133  Sum_probs=89.3

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee--e--cccccceeeEEEcCCCCcEEEEEeCCCcEEEEE-ccc
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT--L--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD-ARI  197 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~  197 (358)
                      ..+-.+.|+.+ . .|++...||++++|++.. +.+..  .  ......|..+.+..+|   ++.-..+|.+.+-+ ...
T Consensus        84 ~~lI~mgWs~~-e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G---Vavlt~~g~v~~i~~~~~  157 (829)
T KOG2280|consen   84 GELIGMGWSDD-E-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG---VAVLTVSGQVILINGVEE  157 (829)
T ss_pred             CCeeeecccCC-c-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc---eEEEecCCcEEEEcCCCc
Confidence            37889999987 4 677889999999999753 22222  1  2223446666666666   55555566665543 222


Q ss_pred             CCCccceee---ecCCeeeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293          198 STHSGFKWA---VAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  272 (358)
Q Consensus       198 ~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  272 (358)
                      ..... ...   ..-+..|-+..+++......-.-+-  -..++-.....        .....+....+.+..+..+|+.
T Consensus       158 ~~~~~-~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~--------~q~~~~~~~~~~~~ki~VS~n~  228 (829)
T KOG2280|consen  158 PKLRK-MPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR--------VQLHALSWPNSSVVKISVSPNR  228 (829)
T ss_pred             chhhh-CCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccc--------ccccccCCCCceEEEEEEcCCc
Confidence            11111 111   1111122222221111111100110  01112222111        1122222223567889999987


Q ss_pred             CcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293          273 PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS  317 (358)
Q Consensus       273 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  317 (358)
                       .+|+--..+|.|.+-+....+..+-.....|..+ ..++|..+.
T Consensus       229 -~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p-~qm~Wcgnd  271 (829)
T KOG2280|consen  229 -RFLALYTETGKIWVVSIDLSQILCEFNCTDHDPP-KQMAWCGND  271 (829)
T ss_pred             -ceEEEEecCCcEEEEecchhhhhhccCCCCCCch-HhceeecCC
Confidence             8899889999999988877664444433333222 245554443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.01  E-value=0.0027  Score=54.06  Aligned_cols=136  Identities=19%  Similarity=0.212  Sum_probs=93.1

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      -+.+.-++.++.+..+..||-.......                             ..-++....++|..++...++.+
T Consensus        43 ~~e~~nlavaca~tiv~~YD~agq~~le-----------------------------~n~tg~aldm~wDkegdvlavlA   93 (615)
T KOG2247|consen   43 RPEGHNLAVACANTIVIYYDKAGQVILE-----------------------------LNPTGKALDMAWDKEGDVLAVLA   93 (615)
T ss_pred             ecCCCceehhhhhhHHHhhhhhcceecc-----------------------------cCCchhHhhhhhccccchhhhhh
Confidence            4555558888888888888864211111                             12345667888988877777778


Q ss_pred             EcCCeEEEEECCCCceeeeec-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC
Q 018293          142 SADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  220 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  220 (358)
                      -..+.+.+||+.+... +++. +....-.-+.|++.. ..++.+...|.+.+++..+.+.......|...+++++|.+.+
T Consensus        94 ek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsKg~-~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd  171 (615)
T KOG2247|consen   94 EKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSKGT-PELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED  171 (615)
T ss_pred             hcCCCeeechhhhhhH-HHHhccCcchHHHHhhccCC-ccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence            8889999999976532 2221 112222237888887 678888899999999998887777566688899999998843


Q ss_pred             CCeEEEEecC
Q 018293          221 EHSFVVSLED  230 (358)
Q Consensus       221 ~~~~~~~~~d  230 (358)
                        +.+.++.|
T Consensus       172 --~vil~dcd  179 (615)
T KOG2247|consen  172 --YVILCDCD  179 (615)
T ss_pred             --eeeecCcH
Confidence              44444433

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.97  E-value=0.39  Score=41.82  Aligned_cols=141  Identities=16%  Similarity=0.199  Sum_probs=88.6

Q ss_pred             EEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC------CCeEEEEecCCeEEEEEcccCCCCCCCCCCCcc
Q 018293          180 ILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS  253 (358)
Q Consensus       180 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  253 (358)
                      ++..++....++-.|++.++.+. .+.....+ -+.|.|..      ...-++|-.+..|.-.|.|-..        ..+
T Consensus       482 i~~dg~~~~kLykmDIErGkvve-eW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g--------NKi  551 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVE-EWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG--------NKI  551 (776)
T ss_pred             EEecCCCcccceeeecccceeee-EeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccC--------Cce
Confidence            34445566677777888777665 44444555 56777642      1234556667777666776542        111


Q ss_pred             EEEee----cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCe
Q 018293          254 FTLHA----HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK  329 (358)
Q Consensus       254 ~~~~~----~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  329 (358)
                      .....    ......+..-...  .++++++..|-|++||.-..+  ....+++....|..+..+.+|.++|++|-  ..
T Consensus       552 ~v~esKdY~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~r--AKtalP~lG~aIk~idvta~Gk~ilaTCk--~y  625 (776)
T COG5167         552 KVVESKDYKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKR--AKTALPGLGDAIKHIDVTANGKHILATCK--NY  625 (776)
T ss_pred             eeeeehhccccccccccccccC--ceEEEecCCCceeeehhhcch--hhhcCcccccceeeeEeecCCcEEEEeec--ce
Confidence            11111    1122334433333  499999999999999975544  34456666778999999999999888764  57


Q ss_pred             EEEEEcc
Q 018293          330 LEIWDTL  336 (358)
Q Consensus       330 i~vw~~~  336 (358)
                      +.+-|+.
T Consensus       626 llL~d~~  632 (776)
T COG5167         626 LLLTDVP  632 (776)
T ss_pred             EEEEecc
Confidence            8887775

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.93  E-value=0.67  Score=37.17  Aligned_cols=176  Identities=12%  Similarity=0.104  Sum_probs=95.1

Q ss_pred             cCCCceEEecCCCC--eEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           62 REKGNFMAVGSMEP--AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        62 s~~~~~l~~g~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      ..+|.++-+.+.-|  .|+.+|+.+++......+..                     .  -....|+-+   .  ..+..
T Consensus        53 ~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~---------------------~--~FgEGit~~---~--d~l~q  104 (264)
T PF05096_consen   53 LDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP---------------------R--YFGEGITIL---G--DKLYQ  104 (264)
T ss_dssp             EETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT---------------------T----EEEEEEE---T--TEEEE
T ss_pred             cCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc---------------------c--ccceeEEEE---C--CEEEE
Confidence            45777777777666  78899998776544322211                     0  011223222   2  33455


Q ss_pred             EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee-----cCCeeeE
Q 018293          140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-----AADVESL  214 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~i~~~  214 (358)
                      -.-.++...+||.++.+.+.++.- ...=..++  .++ ..|+.+.....+.++|..+.+......-.     -..++.+
T Consensus       105 LTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL  180 (264)
T PF05096_consen  105 LTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDG-KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL  180 (264)
T ss_dssp             EESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECS-SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred             EEecCCeEEEEccccceEEEEEec-CCcceEEE--cCC-CEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence            556778899999999988888863 34556777  445 45666766788999998765543322111     1234455


Q ss_pred             EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe---------------ecCCceeEEEecCCCCcEEEEE
Q 018293          215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---------------AHDKAVCTISYNPLVPNLLATG  279 (358)
Q Consensus       215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~~i~~~~~~~~~l~~~  279 (358)
                      .|..  +.+.|=.-....|...|..++         .....+.               ....-.+.|++.|..+.+++||
T Consensus       181 E~i~--G~IyANVW~td~I~~Idp~tG---------~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  181 EYIN--GKIYANVWQTDRIVRIDPETG---------KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEET--TEEEEEETTSSEEEEEETTT----------BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEc--CEEEEEeCCCCeEEEEeCCCC---------eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            5542  222222333444555555554         2222111               1134579999999886777776


Q ss_pred             e
Q 018293          280 S  280 (358)
Q Consensus       280 ~  280 (358)
                      =
T Consensus       250 K  250 (264)
T PF05096_consen  250 K  250 (264)
T ss_dssp             T
T ss_pred             C
Confidence            3

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.92  E-value=0.048  Score=29.69  Aligned_cols=32  Identities=25%  Similarity=0.241  Sum_probs=27.1

Q ss_pred             ccEEEEecCCCCC--cEEEEEEcCCeEEEEECCC
Q 018293          123 DSVLGLAWNKEFR--NILASASADKQVKIWDVAA  154 (358)
Q Consensus       123 ~~v~~~~~~~~~~--~~l~s~~~dg~v~iwd~~~  154 (358)
                      ++|.++.|+|...  .+|+-+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998755  6888888889999999985

It contains a characteristic DLL sequence motif.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.89  E-value=0.74  Score=37.28  Aligned_cols=157  Identities=11%  Similarity=0.085  Sum_probs=86.7

Q ss_pred             cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEE-cccCCCcc
Q 018293          124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD-ARISTHSG  202 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~  202 (358)
                      .+...++++++..+.+....++.-.+|-...+....... ....+..-.|++++ ...+....+...+++. ...+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCC-CEEEEEcCCCceEEEEecCCCccee
Confidence            688999999955444444233334444333333333322 22367888999997 6666666666666663 23332221


Q ss_pred             ce--eeec-CCeeeEEEcCCCCCeEEEE--ecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEE
Q 018293          203 FK--WAVA-ADVESLAWDPHAEHSFVVS--LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA  277 (358)
Q Consensus       203 ~~--~~~~-~~i~~~~~~~~~~~~~~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~  277 (358)
                      ..  .... ..|..+.++|++.+..+..  ..++.|.+--+........................+..+.|.+++ .+++
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V  181 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVV  181 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEE
Confidence            11  1111 2899999999877655554  235777777665432210000011222222335678999999988 5655


Q ss_pred             EEeCCC
Q 018293          278 TGSTDK  283 (358)
Q Consensus       278 ~~~~dg  283 (358)
                      .+...+
T Consensus       182 ~~~~~~  187 (253)
T PF10647_consen  182 LGRSAG  187 (253)
T ss_pred             EeCCCC
Confidence            554433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.73  E-value=0.65  Score=42.41  Aligned_cols=120  Identities=12%  Similarity=0.098  Sum_probs=69.1

Q ss_pred             ceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-ceeeecCCeeeEEEc--CCCCCeEEEEecCCeEEEEEcccCCC
Q 018293          167 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWD--PHAEHSFVVSLEDGTIKGFDIRTAKS  243 (358)
Q Consensus       167 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~--~~~~~~~~~~~~dg~i~i~d~~~~~~  243 (358)
                      .+.-+.-+.-+ ...++-+....+.|||.+...... ........|..+.|.  |++. .+++-+-...|.+|--.....
T Consensus        31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccchhh
Confidence            33444444444 444444555679999998776322 122346789999985  4444 555555677888876532221


Q ss_pred             CCCCCCCCccEE--EeecC-CceeEEEecCCCCcEEEEEeCCCcEEEEecC
Q 018293          244 DPDSTSQQSSFT--LHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLS  291 (358)
Q Consensus       244 ~~~~~~~~~~~~--~~~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~  291 (358)
                      ....+...++..  +..++ .+|.+..|.++| . +++|+ ++.+.|+|-.
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~-LvV~s-GNqlfv~dk~  156 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-T-LVVGS-GNQLFVFDKW  156 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCC-e-EEEEe-CCEEEEECCC
Confidence            111122233333  33444 679999999987 4 44444 4568888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK10115 protease 2; Provisional

Probab=95.67  E-value=2  Score=40.56  Aligned_cols=234  Identities=12%  Similarity=0.052  Sum_probs=112.1

Q ss_pred             cccCCCceEEecCC-----CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293           60 KDREKGNFMAVGSM-----EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF  134 (358)
Q Consensus        60 ~~s~~~~~l~~g~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  134 (358)
                      .+||||++|+.+..     .-.|++.|+.++..+..                          .+. ..  -..++|.+++
T Consensus       133 ~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--------------------------~i~-~~--~~~~~w~~D~  183 (686)
T PRK10115        133 AITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--------------------------LLD-NV--EPSFVWANDS  183 (686)
T ss_pred             EECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--------------------------ccc-Cc--ceEEEEeeCC
Confidence            45899998886532     23688888875542211                          000 11  1458999996


Q ss_pred             CcEEEEEEcC-----CeEEEEECCCC--ceeeeeccccccee-eEEEcCCCCcEEEEEe---CCCcEEEEEcccCCC-cc
Q 018293          135 RNILASASAD-----KQVKIWDVAAG--KCNLTLEHHTDKVQ-AVAWNHHSPQILLSGS---FDRSVVMKDARISTH-SG  202 (358)
Q Consensus       135 ~~~l~s~~~d-----g~v~iwd~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~-~~  202 (358)
                      ..++++...+     ..|..+++.++  +-...+........ ....+.++ .+++..+   .++.+.+++...... ..
T Consensus       184 ~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~-~~l~i~~~~~~~~~~~l~~~~~~~~~~~  262 (686)
T PRK10115        184 WTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSK-HYVVIHLASATTSEVLLLDAELADAEPF  262 (686)
T ss_pred             CEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCC-CEEEEEEECCccccEEEEECcCCCCCce
Confidence            5555554432     36788888877  33333433223233 23334366 4444433   245788888533211 11


Q ss_pred             ceeeecCCe-eeEEEcCCCCCeEEEEecC-C--eEEEEEcccCCCCCCCCCCCccEEEeec--CCceeEEEecCCCCcEE
Q 018293          203 FKWAVAADV-ESLAWDPHAEHSFVVSLED-G--TIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLL  276 (358)
Q Consensus       203 ~~~~~~~~i-~~~~~~~~~~~~~~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~~l  276 (358)
                      ........+ ..+. +. +..+++....+ .  .|...++...         .....+..+  ...+..+.+..  ..++
T Consensus       263 ~~~~~~~~~~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~---------~~~~~l~~~~~~~~i~~~~~~~--~~l~  329 (686)
T PRK10115        263 VFLPRRKDHEYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDE---------QQWEELIPPRENIMLEGFTLFT--DWLV  329 (686)
T ss_pred             EEEECCCCCEEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCc---------ccCeEEECCCCCCEEEEEEEEC--CEEE
Confidence            122222222 2222 22 23233333221 2  3333333321         122333334  23678888873  3677


Q ss_pred             EEEeCCCcEEEEecC--CCCceeeEecC-CCCceeEEEEEc--CCCCeEEEEEcc---CCeEEEEEccCCC
Q 018293          277 ATGSTDKMVKLWDLS--NNQPSCIASRN-PKAGAVFSVAFS--EDSPFVLAIGGS---KGKLEIWDTLSDA  339 (358)
Q Consensus       277 ~~~~~dg~i~i~d~~--~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~l~~~~~---dg~i~vw~~~~~~  339 (358)
                      ++...+|.-+++-+.  +..   ...+. .....+..+.++  +++..++++.+.   -+.+..+|+.+++
T Consensus       330 ~~~~~~g~~~l~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        330 VEERQRGLTSLRQINRKTRE---VIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             EEEEeCCEEEEEEEcCCCCc---eEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            777778775555443  332   22222 112223333444  343334444332   2578888887654

>PHA02790 Kelch-like protein; Provisional

Probab=95.42  E-value=1.9  Score=38.77  Aligned_cols=98  Identities=11%  Similarity=0.020  Sum_probs=45.8

Q ss_pred             CcEEEEEEcCC---eEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc--eeee
Q 018293          135 RNILASASADK---QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--KWAV  207 (358)
Q Consensus       135 ~~~l~s~~~dg---~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~  207 (358)
                      +.+.+.|+.++   .+..||.++.+-..  .+....... +++ .-++ .+.+.|   |.+.+||.++.+-...  ....
T Consensus       363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~-~IYv~G---G~~e~ydp~~~~W~~~~~m~~~  436 (480)
T PHA02790        363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGR-RLFLVG---RNAEFYCESSNTWTLIDDPIYP  436 (480)
T ss_pred             CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECC-EEEEEC---CceEEecCCCCcEeEcCCCCCC
Confidence            45667776553   47788887654322  111111111 121 1233 555555   3567788765532110  1111


Q ss_pred             cCCeeeEEEcCCCCCeEEEEecC-----CeEEEEEcccC
Q 018293          208 AADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTA  241 (358)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~  241 (358)
                      ......+.+   ++.++++|+.+     ..+..||..+.
T Consensus       437 r~~~~~~v~---~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        437 RDNPELIIV---DNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             ccccEEEEE---CCEEEEECCcCCCcccceEEEEECCCC
Confidence            112222222   34577777654     34667776643

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.42  E-value=0.96  Score=35.31  Aligned_cols=151  Identities=12%  Similarity=0.134  Sum_probs=85.1

Q ss_pred             cceeeEEEcCCCCcEEEEEeCC---------CcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEE
Q 018293          166 DKVQAVAWNHHSPQILLSGSFD---------RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF  236 (358)
Q Consensus       166 ~~v~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~  236 (358)
                      ...+.-..+|+| ++++-.-.|         |.++.|-.  +..+...+..-.--+.++|+.+...+.++-+.+-.|.-|
T Consensus       109 nR~NDgkvdP~G-ryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  109 NRLNDGKVDPDG-RYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             cccccCccCCCC-ceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            445566678998 553322222         33444432  222222333334456789998666666666777788777


Q ss_pred             E--cccCCCCCCCCCCCccEEEeec----CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEE
Q 018293          237 D--IRTAKSDPDSTSQQSSFTLHAH----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS  310 (358)
Q Consensus       237 d--~~~~~~~~~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~  310 (358)
                      |  ..++....    .+.++.+...    ....-.+++..+| ++.++.-..++|...|..+++..  .++.-....|++
T Consensus       186 dyd~~tG~~sn----r~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~tGK~L--~eiklPt~qits  258 (310)
T KOG4499|consen  186 DYDCPTGDLSN----RKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKVDPTTGKIL--LEIKLPTPQITS  258 (310)
T ss_pred             ecCCCcccccC----cceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEECCCCCcEE--EEEEcCCCceEE
Confidence            7  44443211    1223333221    1112344555566 77777777889999999999954  444444778999


Q ss_pred             EEEcCCC-CeEEEEEcc
Q 018293          311 VAFSEDS-PFVLAIGGS  326 (358)
Q Consensus       311 ~~~~~~~-~~~l~~~~~  326 (358)
                      ++|-..+ ..+++++..
T Consensus       259 ccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  259 CCFGGKNLDILYVTTAA  275 (310)
T ss_pred             EEecCCCccEEEEEehh
Confidence            9997542 324455443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.40  E-value=0.095  Score=28.56  Aligned_cols=33  Identities=36%  Similarity=0.448  Sum_probs=26.4

Q ss_pred             ceeEEEEEcCCCC--eEEEEEccCCeEEEEEccCC
Q 018293          306 GAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       306 ~~v~~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~  338 (358)
                      +.+.++.|+|+..  -+|+..-..|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3588999997543  47888888899999999863

It contains a characteristic DLL sequence motif.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.39  E-value=0.56  Score=38.80  Aligned_cols=151  Identities=10%  Similarity=0.098  Sum_probs=72.8

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEc-ccCC
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA-RIST  199 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~  199 (358)
                      -.+.+..+.-+++ +.+++++..-....-||.-...-...-+.....|..|.|.|++ .+.+ ....|.|++=+. ...+
T Consensus       143 ~~gs~~~~~r~~d-G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~-~lw~-~~~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  143 TSGSINDITRSSD-GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDG-NLWM-LARGGQIQFSDDPDDGE  219 (302)
T ss_dssp             ----EEEEEE-TT-S-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEE
T ss_pred             CcceeEeEEECCC-CcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCC-CEEE-EeCCcEEEEccCCCCcc
Confidence            3467888888888 5677777665566677754322222223346789999999997 5544 448888888771 1111


Q ss_pred             C----ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe---ecCCceeEEEecCCC
Q 018293          200 H----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLV  272 (358)
Q Consensus       200 ~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~  272 (358)
                      .    ..........+..++|.++ ....++ +..|.+ +.....+         +......   .-...+..+.|.+..
T Consensus       220 ~w~~~~~~~~~~~~~~ld~a~~~~-~~~wa~-gg~G~l-~~S~DgG---------ktW~~~~~~~~~~~n~~~i~f~~~~  287 (302)
T PF14870_consen  220 TWSEPIIPIKTNGYGILDLAYRPP-NEIWAV-GGSGTL-LVSTDGG---------KTWQKDRVGENVPSNLYRIVFVNPD  287 (302)
T ss_dssp             EE---B-TTSS--S-EEEEEESSS-S-EEEE-ESTT-E-EEESSTT---------SS-EE-GGGTTSSS---EEEEEETT
T ss_pred             ccccccCCcccCceeeEEEEecCC-CCEEEE-eCCccE-EEeCCCC---------ccceECccccCCCCceEEEEEcCCC
Confidence            1    0101122334788999984 334554 455544 3344443         2233322   123457788887654


Q ss_pred             CcEEEEEeCCCcEEEE
Q 018293          273 PNLLATGSTDKMVKLW  288 (358)
Q Consensus       273 ~~~l~~~~~dg~i~i~  288 (358)
                       +-++. +.+|.|--|
T Consensus       288 -~gf~l-G~~G~ll~~  301 (302)
T PF14870_consen  288 -KGFVL-GQDGVLLRY  301 (302)
T ss_dssp             -EEEEE--STTEEEEE
T ss_pred             -ceEEE-CCCcEEEEe
Confidence             44444 567876544

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.36  E-value=1.2  Score=36.29  Aligned_cols=220  Identities=12%  Similarity=0.129  Sum_probs=118.6

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECC------CC-ceeeeecc-----cccceeeEEEcCCC-----------Cc
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVA------AG-KCNLTLEH-----HTDKVQAVAWNHHS-----------PQ  179 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~-----------~~  179 (358)
                      ..-+.|+++|. +.+-++....+...+||..      .. .++-.+..     .....+.+.|+...           ..
T Consensus        23 ~N~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        23 RNAWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS  101 (336)
T ss_pred             cccceeEecCC-CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence            34678999998 5577777777899999986      11 22333331     23457778877432           12


Q ss_pred             EEEEEeCCCcEEEEEcccCCC---cc-ceee--ecCC-eeeEEEcCC--CCCeEEEEecCCeEEEEEcccCCCCCC--C-
Q 018293          180 ILLSGSFDRSVVMKDARISTH---SG-FKWA--VAAD-VESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPD--S-  247 (358)
Q Consensus       180 ~l~~~~~dg~i~i~d~~~~~~---~~-~~~~--~~~~-i~~~~~~~~--~~~~~~~~~~dg~i~i~d~~~~~~~~~--~-  247 (358)
                      .++.+++||+|.-|...-...   .. ....  .... -..+++...  +..+.++--..++|.+||-.-......  . 
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~  181 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI  181 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence            367889999999998643332   11 1111  1122 233444432  344555556789999998764421100  0 


Q ss_pred             ----CCCCccEEEeec--CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcC------
Q 018293          248 ----TSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE------  315 (358)
Q Consensus       248 ----~~~~~~~~~~~~--~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~------  315 (358)
                          +..-..+.+..-  .-.|+-..-.++. +.=+.|..-|.|-+||....- .......+.-..-+.|+..|      
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~l-~~r~as~g~LNaPWG~a~APa~FG~~  259 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQL-LRRVASSGRLNAPWGLAIAPESFGSL  259 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCcE-EEEeccCCcccCCceeeeChhhhCCC
Confidence                000000000000  0111212222222 222334445789999986542 12222233334456677755      


Q ss_pred             CCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293          316 DSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       316 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                      .|. +|+---.||+|..||..+++-+..+..
T Consensus       260 sg~-lLVGNFGDG~InaFD~~sG~~~g~L~~  289 (336)
T TIGR03118       260 SGA-LLVGNFGDGTINAYDPQSGAQLGQLLD  289 (336)
T ss_pred             CCC-eEEeecCCceeEEecCCCCceeeeecC
Confidence            455 677666899999999998886654443

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.32  E-value=1.2  Score=35.99  Aligned_cols=156  Identities=13%  Similarity=0.110  Sum_probs=84.2

Q ss_pred             ceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEE-cccCCCCC
Q 018293          167 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD-IRTAKSDP  245 (358)
Q Consensus       167 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d-~~~~~~~~  245 (358)
                      .+.+.++++++..+.+....++.-.+|-...+....... ....+..-.|+++ +...++...+...+++. ...+.   
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~---   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGT---   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCC-CCEEEEEcCCCceEEEEecCCCc---
Confidence            688899999994444444334444444444333332221 3347788899996 44555555555556653 22221   


Q ss_pred             CCCCCCccEEEeec--CCceeEEEecCCCCcEEEEEe--CCCcEEEEecCC---CCce----eeEecCCCCceeEEEEEc
Q 018293          246 DSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGS--TDKMVKLWDLSN---NQPS----CIASRNPKAGAVFSVAFS  314 (358)
Q Consensus       246 ~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~~l~~~~--~dg~i~i~d~~~---~~~~----~~~~~~~~~~~v~~~~~~  314 (358)
                           .........  ...|..+.++|||.+..+...  .++.|.+--+..   +.+.    ...........+..+.|.
T Consensus       100 -----~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~  174 (253)
T PF10647_consen  100 -----GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS  174 (253)
T ss_pred             -----ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence                 111111111  128999999999955444442  346676654432   2011    111122234678999999


Q ss_pred             CCCCeEEEEEccCCeEEE
Q 018293          315 EDSPFVLAIGGSKGKLEI  332 (358)
Q Consensus       315 ~~~~~~l~~~~~dg~i~v  332 (358)
                      +++..+++....++.+..
T Consensus       175 ~~~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  175 DDSTLVVLGRSAGGPVVR  192 (253)
T ss_pred             CCCEEEEEeCCCCCceeE
Confidence            999854444444443444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.19  E-value=2.7  Score=39.11  Aligned_cols=114  Identities=11%  Similarity=0.064  Sum_probs=74.6

Q ss_pred             cEEEEecCCC-CCcEEEEEEcCCeEEEEECCC-------C-------------ceeeeecccccceeeEEEc--CCCCcE
Q 018293          124 SVLGLAWNKE-FRNILASASADKQVKIWDVAA-------G-------------KCNLTLEHHTDKVQAVAWN--HHSPQI  180 (358)
Q Consensus       124 ~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~-------~-------------~~~~~~~~~~~~v~~~~~~--~~~~~~  180 (358)
                      .|+.|....- +...|+.|..||.|.+|.+++       .             ++...+. ....+++++++  ... ++
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rl  179 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RL  179 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-eE
Confidence            4555544322 245899999999999997631       0             0111222 34578899998  555 78


Q ss_pred             EEEEeCCCcEEEEEcccC--CCc-cceeeecCCeeeEEEcCCC--CC---eEEEEecCCeEEEEEcc
Q 018293          181 LLSGSFDRSVVMKDARIS--THS-GFKWAVAADVESLAWDPHA--EH---SFVVSLEDGTIKGFDIR  239 (358)
Q Consensus       181 l~~~~~dg~i~i~d~~~~--~~~-~~~~~~~~~i~~~~~~~~~--~~---~~~~~~~dg~i~i~d~~  239 (358)
                      +|+++....|.||-....  +.. .....+..-|.+|+|-++.  +.   .+++++-.|.+.+|++.
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            888888888888765542  111 1122355678899997754  22   67788899999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.07  E-value=1  Score=41.14  Aligned_cols=112  Identities=15%  Similarity=0.224  Sum_probs=67.7

Q ss_pred             cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeec-ccccceeeEEEc--CCCCcEEEEEeCCCcEEEEEccc---
Q 018293          124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWN--HHSPQILLSGSFDRSVVMKDARI---  197 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~---  197 (358)
                      .+.-+.-+.. ++..+.-+....+.|||.+.+.....-. ...+.|.++.|.  |++ +.+++.+....|.++.-..   
T Consensus        31 ~~~li~gss~-~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   31 NPSLISGSSI-KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CcceEeeccc-CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhh
Confidence            3444444444 3333333445679999998876433222 346889999995  567 7788888888998886421   


Q ss_pred             --CCC----ccc--eee-ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          198 --STH----SGF--KWA-VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       198 --~~~----~~~--~~~-~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                        ..+    +..  ... ...+|.+..|.++|  .+++|+ ++.+.++|-.-
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G--~LvV~s-GNqlfv~dk~~  157 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG--TLVVGS-GNQLFVFDKWL  157 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCC--eEEEEe-CCEEEEECCCc
Confidence              111    000  111 23678899999854  455543 46788887643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.05  E-value=1.4  Score=35.29  Aligned_cols=198  Identities=11%  Similarity=0.068  Sum_probs=116.4

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  202 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  202 (358)
                      ..-..++-.|+ +..-+++...+.|--.|..+|+....--+.......+..-|++. .-++-+.. .|.-.|-++.+...
T Consensus        62 ~ap~dvapapd-G~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~-~Witd~~~-aI~R~dpkt~evt~  138 (353)
T COG4257          62 SAPFDVAPAPD-GAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS-AWITDTGL-AIGRLDPKTLEVTR  138 (353)
T ss_pred             CCccccccCCC-CceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCC-eeEecCcc-eeEEecCcccceEE
Confidence            44567788888 55778888888899999999987665555556667788889884 33332222 55556665544333


Q ss_pred             cee---eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee-cCCceeEEEecCCCCcEEEE
Q 018293          203 FKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLAT  278 (358)
Q Consensus       203 ~~~---~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~  278 (358)
                      ...   ..........|++.+ ++.+++. .|.---.|...          ..+..+.. ....-..|+..|+| ..-++
T Consensus       139 f~lp~~~a~~nlet~vfD~~G-~lWFt~q-~G~yGrLdPa~----------~~i~vfpaPqG~gpyGi~atpdG-svwya  205 (353)
T COG4257         139 FPLPLEHADANLETAVFDPWG-NLWFTGQ-IGAYGRLDPAR----------NVISVFPAPQGGGPYGICATPDG-SVWYA  205 (353)
T ss_pred             eecccccCCCcccceeeCCCc-cEEEeec-cccceecCccc----------CceeeeccCCCCCCcceEECCCC-cEEEE
Confidence            222   123457778898854 4666664 22111111111          11122211 22345788999998 56666


Q ss_pred             EeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          279 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       279 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      .-.+..|...|..++....+-.-......-..+--+|.|+ +-++-...+.+.-||-.+
T Consensus       206 slagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~  263 (353)
T COG4257         206 SLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             eccccceEEcccccCCcceecCCCcccccccccccCccCc-EEEeccCCceeeEeCccc
Confidence            5666777777877665333322222233445566667777 566666667777777654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.99  E-value=0.53  Score=41.05  Aligned_cols=139  Identities=16%  Similarity=0.094  Sum_probs=86.6

Q ss_pred             EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCC------cEEEEEeCCCcEEEEEcccCCCccceeeec---
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP------QILLSGSFDRSVVMKDARISTHSGFKWAVA---  208 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---  208 (358)
                      +..|..-..+.--|++.|+.+.....|..-  -+.|.|...      ..-++|-.+..|.-.|.+............   
T Consensus       483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~  560 (776)
T COG5167         483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK  560 (776)
T ss_pred             EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc
Confidence            334555566777788899998888877654  467776531      123455567777777776544222122222   


Q ss_pred             --CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEE
Q 018293          209 --ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK  286 (358)
Q Consensus       209 --~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~  286 (358)
                        ....+..-.  ...++++++..|-|++||.-..         .....+++-...|..+..+.+| .++++.+ ...+.
T Consensus       561 tKn~Fss~~tT--esGyIa~as~kGDirLyDRig~---------rAKtalP~lG~aIk~idvta~G-k~ilaTC-k~yll  627 (776)
T COG5167         561 TKNKFSSGMTT--ESGYIAAASRKGDIRLYDRIGK---------RAKTALPGLGDAIKHIDVTANG-KHILATC-KNYLL  627 (776)
T ss_pred             ccccccccccc--cCceEEEecCCCceeeehhhcc---------hhhhcCcccccceeeeEeecCC-cEEEEee-cceEE
Confidence              223333322  2348999999999999997654         3344556667789999999998 4444444 34666


Q ss_pred             EEecC
Q 018293          287 LWDLS  291 (358)
Q Consensus       287 i~d~~  291 (358)
                      +-|++
T Consensus       628 L~d~~  632 (776)
T COG5167         628 LTDVP  632 (776)
T ss_pred             EEecc
Confidence            77764

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.90  E-value=3.7  Score=39.20  Aligned_cols=282  Identities=13%  Similarity=0.160  Sum_probs=138.7

Q ss_pred             EEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCc
Q 018293            9 VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEV   88 (358)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~   88 (358)
                      ++++|-.++.    .+-+.-..+.   .+..|.....+.+|-.+-...    |-.|..+|.++..||.+.-|-++.....
T Consensus       550 ~~aVG~Ws~~----~~~l~~~pd~---~~~~~~~l~~~~iPRSIl~~~----~e~d~~yLlvalgdG~l~~fv~d~~tg~  618 (1096)
T KOG1897|consen  550 LLAVGLWSDI----SMILTFLPDL---ILITHEQLSGEIIPRSILLTT----FEGDIHYLLVALGDGALLYFVLDINTGQ  618 (1096)
T ss_pred             EEEEEeecce----EEEEEECCCc---ceeeeeccCCCccchheeeEE----eeccceEEEEEcCCceEEEEEEEcccce
Confidence            6777777652    1222222222   344444455555555443322    2456889999999999987776543221


Q ss_pred             CceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccce
Q 018293           89 QPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKV  168 (358)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  168 (358)
                      ...                       .+...-...++.--.|+..+++.+++++ |.-..+|. .+++....--..+.--
T Consensus       619 lsd-----------------------~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~-~n~kLv~spls~kev~  673 (1096)
T KOG1897|consen  619 LSD-----------------------RKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYS-SNGKLVYSPLSLKEVN  673 (1096)
T ss_pred             Ecc-----------------------ccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEe-cCCcEEEeccchHHhh
Confidence            100                       0000012345555556655555565554 44445554 2333322211111111


Q ss_pred             eeEEEcCC-CCcEEEEEeCCCcEEEEEcccCCCccc-eeeecCCeeeEEEcCCCCCeEEEEecC--------------Ce
Q 018293          169 QAVAWNHH-SPQILLSGSFDRSVVMKDARISTHSGF-KWAVAADVESLAWDPHAEHSFVVSLED--------------GT  232 (358)
Q Consensus       169 ~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~d--------------g~  232 (358)
                      ..+.|+.+ .+..++++. .+.+++..+..-+.... ..........+++.+ ....+.+.+..              ..
T Consensus       674 ~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~  751 (1096)
T KOG1897|consen  674 HMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSF  751 (1096)
T ss_pred             hhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecc-cceEEEEEecccccchhhcCCcceEEE
Confidence            11223322 223344444 55677766654333221 233445667777776 23333333221              13


Q ss_pred             EEEEEcccCCCCCCCCCCCccEEEeecC-------CceeEEEecCCCCcEEEEEeC----------CCcEEEEecCC-CC
Q 018293          233 IKGFDIRTAKSDPDSTSQQSSFTLHAHD-------KAVCTISYNPLVPNLLATGST----------DKMVKLWDLSN-NQ  294 (358)
Q Consensus       233 i~i~d~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~~l~~~~~----------dg~i~i~d~~~-~~  294 (358)
                      ++++|-++-            ..+..|.       ..+.++.|..|.+.++++|+.          .|.|.+|.+.. ++
T Consensus       752 l~vlD~nTf------------~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~  819 (1096)
T KOG1897|consen  752 LRVLDQNTF------------EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS  819 (1096)
T ss_pred             EEEecCCce------------eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence            555555443            2222221       235556688775477777753          47788888877 33


Q ss_pred             ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          295 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       295 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      ...+.+. .-.+.+.++..- +|+ ++|  +-+..|++|++.+++.++..-
T Consensus       820 L~~v~e~-~v~Gav~aL~~f-ngk-llA--~In~~vrLye~t~~~eLr~e~  865 (1096)
T KOG1897|consen  820 LELVAET-VVKGAVYALVEF-NGK-LLA--GINQSVRLYEWTTERELRIEC  865 (1096)
T ss_pred             eeeeeee-eeccceeehhhh-CCe-EEE--ecCcEEEEEEccccceehhhh
Confidence            2222222 223445554332 455 454  456789999999986665433

>PLN02153 epithiospecifier protein

Probab=94.83  E-value=2.2  Score=36.36  Aligned_cols=53  Identities=17%  Similarity=0.213  Sum_probs=27.9

Q ss_pred             CcEEEEecCCCCceeeEec---CCCCceeEEEEEcCCCCeEEEEEccC--------------CeEEEEEccCC
Q 018293          283 KMVKLWDLSNNQPSCIASR---NPKAGAVFSVAFSEDSPFVLAIGGSK--------------GKLEIWDTLSD  338 (358)
Q Consensus       283 g~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d--------------g~i~vw~~~~~  338 (358)
                      ..+.+||..+.+...+...   ..... ..+++. -+++ +++.|+..              +.+..||+.+.
T Consensus       217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~-~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~  286 (341)
T PLN02153        217 NAVQFFDPASGKWTEVETTGAKPSARS-VFAHAV-VGKY-IIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL  286 (341)
T ss_pred             CceEEEEcCCCcEEeccccCCCCCCcc-eeeeEE-ECCE-EEEECcccCCccccccccccccccEEEEEcCcc
Confidence            4588999988775433221   11111 122222 2344 77778752              25778887653

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.62  E-value=0.031  Score=51.50  Aligned_cols=185  Identities=12%  Similarity=0.156  Sum_probs=105.7

Q ss_pred             CCeEEEEECCCCc-eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc--CCCcc-----ceeeecCCeeeEE
Q 018293          144 DKQVKIWDVAAGK-CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--STHSG-----FKWAVAADVESLA  215 (358)
Q Consensus       144 dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~-----~~~~~~~~i~~~~  215 (358)
                      .+.+++-+..+.- .-..+++..+.+-.+.|-......+.  -.-|.+.+||+..  ++...     ........+..+.
T Consensus       110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~  187 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS  187 (1283)
T ss_pred             hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence            4557776655432 11234566777888888543222222  3457788998763  22211     1112344566777


Q ss_pred             EcCC--CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEE-----------ecCCCCcEEEEEeCC
Q 018293          216 WDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS-----------YNPLVPNLLATGSTD  282 (358)
Q Consensus       216 ~~~~--~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~-----------~~~~~~~~l~~~~~d  282 (358)
                      |.|.  +.-++..+..++.+++.......        .  ..+.+|...+..++           .+||| ..+++.+.|
T Consensus       188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--------~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~d  256 (1283)
T KOG1916|consen  188 WCPIAVNKVYICYGLKGGEIRLLNINRAL--------R--SLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISD  256 (1283)
T ss_pred             ecccccccceeeeccCCCceeEeeechHH--------H--HHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecC
Confidence            7764  23456667778888887776541        1  22233554444332           68888 899999999


Q ss_pred             CcEEEEecCC---CCceeeEecCCCC-ceeEEEEEcCC---------CCeEEEEEccCCeEEEEEccCCCcc
Q 018293          283 KMVKLWDLSN---NQPSCIASRNPKA-GAVFSVAFSED---------SPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       283 g~i~i~d~~~---~~~~~~~~~~~~~-~~v~~~~~~~~---------~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      |.++.|.+.-   ....+......|. .+-.|.-++..         -.+++-+...+..+++|.....+++
T Consensus       257 G~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  257 GSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            9988887642   1223555666665 33333333321         1223333445567999999888877

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=94.52  E-value=4.6  Score=38.62  Aligned_cols=185  Identities=15%  Similarity=0.060  Sum_probs=96.2

Q ss_pred             ccCCCcEEEEEEecCCCceEEEEEEeccCC---------CCCceEeeceeec--C----------------Ccccceeee
Q 018293            3 INPNDAVIVCARNEDDVSHLEVYILEESDG---------GDPNLYVHHHIII--P----------------AFPLCMAWL   55 (358)
Q Consensus         3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~--~----------------~~~~~~~~~   55 (358)
                      +.++|..++++..+.-...+++|-....-+         ..|.+...|....  .                .....++++
T Consensus       110 ~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~il  189 (753)
T PF11635_consen  110 PSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEIL  189 (753)
T ss_pred             ecCCCCEEEEEEccccCCceEEEEEEEeccCcCccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEe
Confidence            456777777775653234555553222211         2255665553222  0                122367777


Q ss_pred             cCCccccCCCceEEecCC----CCeEEEEEcccccCcCceeecCCccccccc-ccccCCceeccccccCCCcccEEEEec
Q 018293           56 DCPLKDREKGNFMAVGSM----EPAIEIWDLDVIDEVQPHVILGGIDEEKKK-KKSKKGKKSSIKYKKGSHTDSVLGLAW  130 (358)
Q Consensus        56 ~~~~~~s~~~~~l~~g~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~  130 (358)
                      +..+.-+.....|++.+.    ...|.-|.+......-. ..+......+.. ...+..........+ ...+.|.++..
T Consensus       190 s~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh-~~F~ql~s~~~~~~~~~~~~~l~~~~~i-~~~~~V~si~~  267 (753)
T PF11635_consen  190 SPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLH-PAFQQLGSKKNSSSEPPPTYRLRRLDDI-TLNKRVVSITS  267 (753)
T ss_pred             ccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccc-hhhhhcCCCCcCCCCCCCceeEEEeccc-ccCCeEEEEEe
Confidence            644433333445555442    34799999876432111 111111100000 001111111111111 23456888887


Q ss_pred             CCCCCcEEEEEEcCCeEEEEECCCCceeeee----cc---------------cccceeeEEEcCCCCcEEEEEeCCCcEE
Q 018293          131 NKEFRNILASASADKQVKIWDVAAGKCNLTL----EH---------------HTDKVQAVAWNHHSPQILLSGSFDRSVV  191 (358)
Q Consensus       131 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----~~---------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~  191 (358)
                      ..- +..++....||+|.++|-.+.+.+...    ..               ....+..++|+|.+ ..++.-..+|.+.
T Consensus       268 ~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~-c~~v~~~~~~~~~  345 (753)
T PF11635_consen  268 PEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTM-CSLVQIDEDGKTK  345 (753)
T ss_pred             ccc-CcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECccc-ceEEEEecCCCce
Confidence            766 558999999999999998877554333    10               11133457899998 7788888888865

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.42  E-value=1.7  Score=42.54  Aligned_cols=167  Identities=12%  Similarity=0.148  Sum_probs=95.7

Q ss_pred             cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEE--------cCCCCCeEEEEecCCeEEE
Q 018293          164 HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW--------DPHAEHSFVVSLEDGTIKG  235 (358)
Q Consensus       164 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~~~~~~~~dg~i~i  235 (358)
                      |...-..+-+.|.=++  +-.+-|+.+.+|+.+++.......+....|..+..        .|.=.++++.++ --.|.+
T Consensus        77 ~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~i  153 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVI  153 (1311)
T ss_pred             Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEE
Confidence            3333344555554423  33456899999999986665555555556655543        222233444443 344666


Q ss_pred             EEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecC----CC---C---c----------
Q 018293          236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS----NN---Q---P----------  295 (358)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~----~~---~---~----------  295 (358)
                      +-+.................+......|+++....+| +.+++|- ||.  +|.+.    .+   +   .          
T Consensus       154 lgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nG-RIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~  229 (1311)
T KOG1900|consen  154 LGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENG-RIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSS  229 (1311)
T ss_pred             EEEEeccccCcccccccceeeecCCceEEEEEeccCC-cEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHH
Confidence            6554433222111111224444556678999977776 6766655 553  44431    10   0   0          


Q ss_pred             --eeeEecC-CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          296 --SCIASRN-PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       296 --~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                        ..+..+. .+..+|..+....... ++.+-+..|+|.+|++...
T Consensus       230 lvPs~~~~~~~~~dpI~qi~ID~SR~-IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  230 LVPSLLSVPGSSKDPIRQITIDNSRN-ILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             hhhhhhcCCCCCCCcceeeEeccccc-eeeeeccCceEEEEEccCC
Confidence              0112223 5667899999987776 7888999999999999873

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.41  E-value=3  Score=35.99  Aligned_cols=148  Identities=7%  Similarity=0.030  Sum_probs=71.8

Q ss_pred             ceeeEEEcCCCCcEEEEEe-----------CCC-cEEEEEcccCCCc----cceeeecCCeeeEEEcCCCCCeEEEEecC
Q 018293          167 KVQAVAWNHHSPQILLSGS-----------FDR-SVVMKDARISTHS----GFKWAVAADVESLAWDPHAEHSFVVSLED  230 (358)
Q Consensus       167 ~v~~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  230 (358)
                      ....|+|.++| +++++-.           ..+ .|.+++-..+.-.    ............+++.++ + +++ +...
T Consensus        15 ~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~-G-lyV-~~~~   90 (367)
T TIGR02604        15 NPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG-G-VYV-ATPP   90 (367)
T ss_pred             CCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecC-C-EEE-eCCC
Confidence            45678888888 6555542           223 6666654332211    111122334678888874 3 444 4444


Q ss_pred             CeEEEEEcccCCCCCCCCCCCccE-EEee----cCCceeEEEecCCCCcEEEEEeCC-------------------CcEE
Q 018293          231 GTIKGFDIRTAKSDPDSTSQQSSF-TLHA----HDKAVCTISYNPLVPNLLATGSTD-------------------KMVK  286 (358)
Q Consensus       231 g~i~i~d~~~~~~~~~~~~~~~~~-~~~~----~~~~i~~i~~~~~~~~~l~~~~~d-------------------g~i~  286 (358)
                      ...++.|........ . ..+.+. .+..    +......++|.|+| .+.++-+..                   |.|.
T Consensus        91 ~i~~~~d~~gdg~ad-~-~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~  167 (367)
T TIGR02604        91 DILFLRDKDGDDKAD-G-EREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLF  167 (367)
T ss_pred             eEEEEeCCCCCCCCC-C-ccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEE
Confidence            333333443221100 0 001111 1211    13447789999998 554443311                   3455


Q ss_pred             EEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEc
Q 018293          287 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG  325 (358)
Q Consensus       287 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  325 (358)
                      -++..+.+.. + ...++ .....++|+++|+ ++++-.
T Consensus       168 r~~pdg~~~e-~-~a~G~-rnp~Gl~~d~~G~-l~~tdn  202 (367)
T TIGR02604       168 RYNPDGGKLR-V-VAHGF-QNPYGHSVDSWGD-VFFCDN  202 (367)
T ss_pred             EEecCCCeEE-E-EecCc-CCCccceECCCCC-EEEEcc
Confidence            5555554421 1 12232 3356799999998 565533

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.19  E-value=3.1  Score=35.31  Aligned_cols=71  Identities=14%  Similarity=0.138  Sum_probs=37.7

Q ss_pred             CCeeeEEEcCC------CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEE-EeecCCceeEEEecCCCCcEEEEEeC
Q 018293          209 ADVESLAWDPH------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTISYNPLVPNLLATGST  281 (358)
Q Consensus       209 ~~i~~~~~~~~------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l~~~~~  281 (358)
                      ..+..+.|...      .+.++++.-..+.|....+.....      ...... +......+..+++.||| .+.++-..
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~r~~~v~~~pDG-~Lyv~~d~  325 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS------VTEEEEFLGGFGGRPRDVAQGPDG-ALYVSDDS  325 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE------EEEEEEECTTSSS-EEEEEEETTS-EEEEEE-T
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC------ccceEEccccCCCCceEEEEcCCC-eEEEEECC
Confidence            34555555532      223455555566788777764411      011111 12234478999999998 67776667


Q ss_pred             CCcEE
Q 018293          282 DKMVK  286 (358)
Q Consensus       282 dg~i~  286 (358)
                      +|.|+
T Consensus       326 ~G~iy  330 (331)
T PF07995_consen  326 DGKIY  330 (331)
T ss_dssp             TTTEE
T ss_pred             CCeEe
Confidence            78764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.11  E-value=2.4  Score=39.04  Aligned_cols=181  Identities=9%  Similarity=0.084  Sum_probs=92.3

Q ss_pred             CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee---eecCCeeeEEEcCCC
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAADVESLAWDPHA  220 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~  220 (358)
                      --.|+|+++ +|+.+..+.-....+-.+.|+.+.  .|++...+|++++|++-.........   .....|..+.+.. +
T Consensus        63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-~  138 (829)
T KOG2280|consen   63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-N  138 (829)
T ss_pred             ceeEEEEec-cccchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec-C
Confidence            346889985 466666554334478889999875  68888999999999986543322111   1223344444443 2


Q ss_pred             CCeEEEEecCCeEEEE-EcccCCCCCCCCCCCccEEEee---cCCceeEEEecCCCC--cEEEEEe-CCCcEEEEecCCC
Q 018293          221 EHSFVVSLEDGTIKGF-DIRTAKSDPDSTSQQSSFTLHA---HDKAVCTISYNPLVP--NLLATGS-TDKMVKLWDLSNN  293 (358)
Q Consensus       221 ~~~~~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~~~---~~~~i~~i~~~~~~~--~~l~~~~-~dg~i~i~d~~~~  293 (358)
                      +  +++-..+|.+.+- +....          ....+..   ...+-+|-...+++.  ..++--. ..+ ..++.....
T Consensus       139 G--Vavlt~~g~v~~i~~~~~~----------~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~  205 (829)
T KOG2280|consen  139 G--VAVLTVSGQVILINGVEEP----------KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEES  205 (829)
T ss_pred             c--eEEEecCCcEEEEcCCCcc----------hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecc
Confidence            3  3444445554433 22221          1111111   111112222222110  1111111 111 112222222


Q ss_pred             CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          294 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       294 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      .. ....+....+.+..+..||+.++ |+--..+|.|.+-++...+.+-+
T Consensus       206 ~~-q~~~~~~~~~~~~ki~VS~n~~~-laLyt~~G~i~~vs~D~~~~lce  253 (829)
T KOG2280|consen  206 RV-QLHALSWPNSSVVKISVSPNRRF-LALYTETGKIWVVSIDLSQILCE  253 (829)
T ss_pred             cc-cccccCCCCceEEEEEEcCCcce-EEEEecCCcEEEEecchhhhhhc
Confidence            21 12222222456888999999996 88888999999988876655443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.07  E-value=0.99  Score=35.55  Aligned_cols=84  Identities=10%  Similarity=0.012  Sum_probs=54.0

Q ss_pred             ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-----eecCCceeEEEecCCCCcEEEEEeC
Q 018293          207 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-----HAHDKAVCTISYNPLVPNLLATGST  281 (358)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~~l~~~~~  281 (358)
                      ...++..+..   .+.++++-+.+|.+++||+.+.+......+..++...     ......|..+.++.+| .-+++-+ 
T Consensus        11 Lgs~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-   85 (219)
T PF07569_consen   11 LGSPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-   85 (219)
T ss_pred             cCCceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-
Confidence            3444444443   3457888999999999999988653322111111111     0355678899999877 6666654 


Q ss_pred             CCcEEEEecCCCCc
Q 018293          282 DKMVKLWDLSNNQP  295 (358)
Q Consensus       282 dg~i~i~d~~~~~~  295 (358)
                      +|..+.|+..-+..
T Consensus        86 ng~~y~y~~~L~~W   99 (219)
T PF07569_consen   86 NGDSYSYSPDLGCW   99 (219)
T ss_pred             CCCEEEecccccee
Confidence            58899999877654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PLN02153 epithiospecifier protein

Probab=93.74  E-value=3.9  Score=34.88  Aligned_cols=22  Identities=9%  Similarity=0.185  Sum_probs=14.2

Q ss_pred             CcEEEEEEcC-----CeEEEEECCCCc
Q 018293          135 RNILASASAD-----KQVKIWDVAAGK  156 (358)
Q Consensus       135 ~~~l~s~~~d-----g~v~iwd~~~~~  156 (358)
                      +.+++.|+.+     ..+.+||+++.+
T Consensus        86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~  112 (341)
T PLN02153         86 TKLYIFGGRDEKREFSDFYSYDTVKNE  112 (341)
T ss_pred             CEEEEECCCCCCCccCcEEEEECCCCE
Confidence            4466666653     357888987654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.74  E-value=1.7  Score=40.35  Aligned_cols=114  Identities=13%  Similarity=0.195  Sum_probs=71.8

Q ss_pred             CCCeEEEEecCCeEEEEEcccCC-----C----C--CCCCCCCccEEEeecCCceeEEEec--CCCCcEEEEEeCCCcEE
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAK-----S----D--PDSTSQQSSFTLHAHDKAVCTISYN--PLVPNLLATGSTDKMVK  286 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~-----~----~--~~~~~~~~~~~~~~~~~~i~~i~~~--~~~~~~l~~~~~dg~i~  286 (358)
                      +...|+++.+||.|.+|.+..-.     .    .  ......++.+.+.. .....+++++  ... ++||+++....|.
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~-rlIAVSsNs~~VT  190 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKS-RLIAVSSNSQEVT  190 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcc-eEEEEecCCceEE
Confidence            44588889999999999774311     0    0  00011123344433 3467899998  654 7888888888888


Q ss_pred             EEecCCCC-ceeeEecCCCCceeEEEEEcCCC-----CeEEEEEccCCeEEEEEc
Q 018293          287 LWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDS-----PFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       287 i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~vw~~  335 (358)
                      ||-..... ......-..+...|.+|+|.++.     ...+++++-.|.+.+|++
T Consensus       191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            87665421 11111112355678899997754     225778899999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.61  E-value=4.4  Score=35.01  Aligned_cols=99  Identities=11%  Similarity=0.080  Sum_probs=48.7

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC-----c--e-eeeecc----cccceeeEEEcCCCCcEEEEEeCC---
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAG-----K--C-NLTLEH----HTDKVQAVAWNHHSPQILLSGSFD---  187 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-----~--~-~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d---  187 (358)
                      .....+++.++ + +++ +......++.|....     +  . +..+..    +......++|.|+| .+.++-+..   
T Consensus        72 ~~p~Gi~~~~~-G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~  147 (367)
T TIGR02604        72 SMVTGLAVAVG-G-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLAS  147 (367)
T ss_pred             CCccceeEecC-C-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCc
Confidence            34578888887 4 444 344433334354311     1  1 112222    13447789999998 555544421   


Q ss_pred             ----------------CcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEE
Q 018293          188 ----------------RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS  227 (358)
Q Consensus       188 ----------------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  227 (358)
                                      |.|.-++....+... ....-.....++|++++ .++++-
T Consensus       148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~-~a~G~rnp~Gl~~d~~G-~l~~td  201 (367)
T TIGR02604       148 KVTRPGTSDESRQGLGGGLFRYNPDGGKLRV-VAHGFQNPYGHSVDSWG-DVFFCD  201 (367)
T ss_pred             eeccCCCccCcccccCceEEEEecCCCeEEE-EecCcCCCccceECCCC-CEEEEc
Confidence                            334444444333211 11112234678999954 455553

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=93.54  E-value=0.42  Score=25.45  Aligned_cols=30  Identities=23%  Similarity=0.417  Sum_probs=22.3

Q ss_pred             CCceeEEEEEcCCCCeEEEEEccC--CeEEEE
Q 018293          304 KAGAVFSVAFSEDSPFVLAIGGSK--GKLEIW  333 (358)
Q Consensus       304 ~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vw  333 (358)
                      ....-....|+|||++++.++..+  |...||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344567789999999888888777  777666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=93.37  E-value=7.9  Score=37.24  Aligned_cols=133  Identities=12%  Similarity=0.156  Sum_probs=77.2

Q ss_pred             eecCCeeeEEEc---CC---CCCeEEEEecCCeEEEEEcccCCC------CCCCCCCCccEEEeec---CCceeEEEecC
Q 018293          206 AVAADVESLAWD---PH---AEHSFVVSLEDGTIKGFDIRTAKS------DPDSTSQQSSFTLHAH---DKAVCTISYNP  270 (358)
Q Consensus       206 ~~~~~i~~~~~~---~~---~~~~~~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~~~~---~~~i~~i~~~~  270 (358)
                      ....+|..|+|.   ..   ...++++ -....+.|+...-.+.      ........++..+..+   ..+...++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456788888887   21   1234444 3455677777322211      1111112334444422   35678999999


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCCCc---eeeEecCCCC----------ceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          271 LVPNLLATGSTDKMVKLWDLSNNQP---SCIASRNPKA----------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       271 ~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~----------~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      .....||+....|...||++.....   ........+.          ..-..+.|.++-..+|+ ++ ...+.++|+.+
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv-~~-r~~l~~~d~~~  233 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLV-CN-RSKLMLIDFES  233 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEE-Ec-CCceEEEECCC
Confidence            8778999999999999999922110   0111111111          22347889888775444 43 45789999988


Q ss_pred             CCcc
Q 018293          338 DAGI  341 (358)
Q Consensus       338 ~~~~  341 (358)
                      ....
T Consensus       234 ~~~~  237 (765)
T PF10214_consen  234 NWQT  237 (765)
T ss_pred             CCcc
Confidence            7653

These proteins are found in fungi.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.34  E-value=0.85  Score=39.24  Aligned_cols=167  Identities=13%  Similarity=0.066  Sum_probs=93.8

Q ss_pred             eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee--eecC----Cee-eEEEcCCCCCeEEEEecCCe
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAA----DVE-SLAWDPHAEHSFVVSLEDGT  232 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~----~i~-~~~~~~~~~~~~~~~~~dg~  232 (358)
                      .+..-...+..+-..|++ +.+..-+. ..+.++++.+........  ...+    .|+ .+..-. ++..+.++..||-
T Consensus       215 ~L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~  291 (733)
T COG4590         215 LLSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGL  291 (733)
T ss_pred             hcCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCc
Confidence            344455677788889999 66655543 678888876544322111  1111    122 111122 5567888888988


Q ss_pred             EEEE-EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEE
Q 018293          233 IKGF-DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  311 (358)
Q Consensus       233 i~i~-d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  311 (358)
                      |.-| |.+......    ...+..++-...++..+.-..+ .+-+++-...|++.++.....++......   -..+.-+
T Consensus       292 vsQWFdvr~~~~p~----l~h~R~f~l~pa~~~~l~pe~~-rkgF~~l~~~G~L~~f~st~~~~lL~~~~---~~~~~~~  363 (733)
T COG4590         292 VSQWFDVRRDGQPH----LNHIRNFKLAPAEVQFLLPETN-RKGFYSLYRNGTLQSFYSTSEKLLLFERA---YQAPQLV  363 (733)
T ss_pred             eeeeeeeecCCCCc----ceeeeccccCcccceeeccccc-cceEEEEcCCCceeeeecccCcceehhhh---hcCccee
Confidence            7665 666542100    1111222222233333332222 25677778889998887666553322222   2346668


Q ss_pred             EEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          312 AFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       312 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      ++||.+.+ ++ .-+.|.++++.+++..
T Consensus       364 ~~Sp~~~~-Ll-~e~~gki~~~~l~Nr~  389 (733)
T COG4590         364 AMSPNQAY-LL-SEDQGKIRLAQLENRN  389 (733)
T ss_pred             eeCcccch-he-eecCCceEEEEecCCC
Confidence            99999997 44 3556889999998754

>PLN02193 nitrile-specifier protein

Probab=93.30  E-value=3.6  Score=36.89  Aligned_cols=63  Identities=16%  Similarity=0.171  Sum_probs=34.0

Q ss_pred             cEEEEEeCC----CcEEEEecCCCCceeeEecC--CCCceeEEEEEcCCCCeEEEEEccC--------------CeEEEE
Q 018293          274 NLLATGSTD----KMVKLWDLSNNQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSK--------------GKLEIW  333 (358)
Q Consensus       274 ~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d--------------g~i~vw  333 (358)
                      .+++.++.+    ..+.+||+.+.+...+....  .......+++. -+++ +++.|+.+              ..+.+|
T Consensus       330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~~ndv~~~  407 (470)
T PLN02193        330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-VGKH-IVIFGGEIAMDPLAHVGPGQLTDGTFAL  407 (470)
T ss_pred             cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-ECCE-EEEECCccCCccccccCccceeccEEEE
Confidence            566666655    45899999887643332221  11111112222 2344 77778753              247788


Q ss_pred             EccCC
Q 018293          334 DTLSD  338 (358)
Q Consensus       334 ~~~~~  338 (358)
                      |+.+.
T Consensus       408 D~~t~  412 (470)
T PLN02193        408 DTETL  412 (470)
T ss_pred             EcCcC
Confidence            88754

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.20  E-value=5.1  Score=35.48  Aligned_cols=79  Identities=11%  Similarity=0.132  Sum_probs=49.2

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEe---------cCCCCcee----------eEecCCCCceeEEEEEcCCC---Ce
Q 018293          262 AVCTISYNPLVPNLLATGSTDKMVKLWD---------LSNNQPSC----------IASRNPKAGAVFSVAFSEDS---PF  319 (358)
Q Consensus       262 ~i~~i~~~~~~~~~l~~~~~dg~i~i~d---------~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~---~~  319 (358)
                      .|..+..++.| ..++-.+.+|.+.++=         +..+++..          ++... ..-.+..++|+|+.   ..
T Consensus       105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-TSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC-CceeeeeccccCCccCCce
Confidence            46778888888 6666667777654432         12232211          11111 12346778999975   43


Q ss_pred             EEEEEccCCeEEEEEccCCCcccc
Q 018293          320 VLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       320 ~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                       |..-+.|+.|++||+.....+..
T Consensus       183 -L~iL~sdnviRiy~lS~~telyl  205 (741)
T KOG4460|consen  183 -LVLLTSDNVIRIYSLSEPTELYL  205 (741)
T ss_pred             -EEEEecCcEEEEEecCCcchhhc
Confidence             55567899999999988776643

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=93.12  E-value=5.1  Score=34.37  Aligned_cols=197  Identities=12%  Similarity=0.129  Sum_probs=109.5

Q ss_pred             CcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEc----CCCCc--EEEEEeCC---CcEEEEEcccCCCccce-
Q 018293          135 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN----HHSPQ--ILLSGSFD---RSVVMKDARISTHSGFK-  204 (358)
Q Consensus       135 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--~l~~~~~d---g~i~i~d~~~~~~~~~~-  204 (358)
                      ..+++...+++-+.+||++ |+.++.+..  +.++.+...    -.+..  +++++..+   ..|++|.+......... 
T Consensus        68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v  144 (381)
T PF02333_consen   68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV  144 (381)
T ss_dssp             G-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred             cceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence            5588888899999999976 556666642  233333321    12312  23333332   46999987632211101 


Q ss_pred             -------eeecCCeeeEEE--cCC-CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc
Q 018293          205 -------WAVAADVESLAW--DPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  274 (358)
Q Consensus       205 -------~~~~~~i~~~~~--~~~-~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  274 (358)
                             ......+..+++  ++. +..++++...+|.+..|.+.......  .....++.+.. .+.+..+...... .
T Consensus       145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~--v~~~lVR~f~~-~sQ~EGCVVDDe~-g  220 (381)
T PF02333_consen  145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK--VSATLVREFKV-GSQPEGCVVDDET-G  220 (381)
T ss_dssp             CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS--EEEEEEEEEE--SS-EEEEEEETTT-T
T ss_pred             CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc--EeeEEEEEecC-CCcceEEEEeccc-C
Confidence                   011123556665  343 44567778899999999886432100  00134555544 4567888888766 6


Q ss_pred             EEEEEeCCCcEEEEecCCCC---ceeeEecCC--CCceeEEEEEcC--CC-CeEEEEEccCCeEEEEEccCC
Q 018293          275 LLATGSTDKMVKLWDLSNNQ---PSCIASRNP--KAGAVFSVAFSE--DS-PFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       275 ~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~--~~~~v~~~~~~~--~~-~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      .|+.+-++.-|.-|+.+...   ...+....+  ....|..++.-.  ++ .|++++.-.+++..||+....
T Consensus       221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            88889888878888876322   222322222  345677777743  33 477887778889999998754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=93.02  E-value=4.6  Score=34.13  Aligned_cols=104  Identities=7%  Similarity=0.064  Sum_probs=47.8

Q ss_pred             CcEEEEEEcC-----CeEEEEECCCCcee---eeecccccce--eeEEEcCCCCcEEEEEeC-----CCcEEEEEcccCC
Q 018293          135 RNILASASAD-----KQVKIWDVAAGKCN---LTLEHHTDKV--QAVAWNHHSPQILLSGSF-----DRSVVMKDARIST  199 (358)
Q Consensus       135 ~~~l~s~~~d-----g~v~iwd~~~~~~~---~~~~~~~~~v--~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~  199 (358)
                      +.+++.|+.+     ..+..+|+.+.+..   ..+..-..+.  .+++.. ++ .+.+.|+.     ...+..||+.+.+
T Consensus        73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~-~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DG-TLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CC-EEEEEeCcCCCccCceEEEEcCCCCC
Confidence            4466667654     35667777665431   1221111111  122222 33 56666664     2357788887654


Q ss_pred             Cccce-eeecCCeeeEEEcCCCCCeEEEEecCC----eEEEEEcccC
Q 018293          200 HSGFK-WAVAADVESLAWDPHAEHSFVVSLEDG----TIKGFDIRTA  241 (358)
Q Consensus       200 ~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~dg----~i~i~d~~~~  241 (358)
                      -.... ..........+... ++.+++.|+.++    .+..||..+.
T Consensus       151 W~~~~~~p~~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             eeECCCCCCCCCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCC
Confidence            22111 01111111111112 345777777654    3567887764

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.02  E-value=5.6  Score=34.57  Aligned_cols=104  Identities=8%  Similarity=0.135  Sum_probs=64.8

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee----eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN----LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  196 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  196 (358)
                      .+++|.++.|++| .+.+|.--.|++|.+++....+..    .+.+.....|....|.... . ++.....| +-+|...
T Consensus        65 d~G~I~SIkFSlD-nkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e-~A~i~~~G-~e~y~v~  140 (657)
T KOG2377|consen   65 DKGEIKSIKFSLD-NKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-E-IAFITDQG-IEFYQVL  140 (657)
T ss_pred             CCCceeEEEeccC-cceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-e-EEEEecCC-eEEEEEc
Confidence            4569999999999 779999999999999997433322    2223344568889998764 3 44444333 4555443


Q ss_pred             cCC-CccceeeecCCeeeEEEcCCCCCeEEEEe
Q 018293          197 IST-HSGFKWAVAADVESLAWDPHAEHSFVVSL  228 (358)
Q Consensus       197 ~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  228 (358)
                      ... ..+....+...|.-..|.++..-.+++.+
T Consensus       141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             hhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            322 22223445666777778885443333333

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.98  E-value=5.8  Score=34.67  Aligned_cols=297  Identities=8%  Similarity=0.059  Sum_probs=144.4

Q ss_pred             CCcEEEEEEecCCCceEEEEEEeccCCC-C-CceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcc
Q 018293            6 NDAVIVCARNEDDVSHLEVYILEESDGG-D-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD   83 (358)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~   83 (358)
                      ....|++|+.++     .+.+|...... . ..+....  ....+++.++.-.+.  -..+...||+- .-..+.||.+.
T Consensus        36 ~~d~IivGS~~G-----~LrIy~P~~~~~~~~~lllE~--~l~~PILqv~~G~F~--s~~~~~~LaVL-hP~kl~vY~v~  105 (418)
T PF14727_consen   36 GSDKIIVGSYSG-----ILRIYDPSGNEFQPEDLLLET--QLKDPILQVECGKFV--SGSEDLQLAVL-HPRKLSVYSVS  105 (418)
T ss_pred             CccEEEEecccc-----EEEEEccCCCCCCCccEEEEE--ecCCcEEEEEecccc--CCCCcceEEEe-cCCEEEEEEEE
Confidence            345777776676     78888875532 1 1333333  345666677664330  02234466664 46788999984


Q ss_pred             cccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCC-CCCcEEEEEEcCCeEEEEECCCCceeeeec
Q 018293           84 VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK-EFRNILASASADKQVKIWDVAAGKCNLTLE  162 (358)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  162 (358)
                      .......        .+.     ...-.....+.+....-...+-.|-. .+..+++.-+.||.+.+++-+.....+.+.
T Consensus       106 ~~~g~~~--------~g~-----~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp  172 (418)
T PF14727_consen  106 LVDGTVE--------HGN-----QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP  172 (418)
T ss_pred             ecCCCcc--------cCc-----EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC
Confidence            3221100        000     00001111122222222233333332 225689999999999999966544334443


Q ss_pred             ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC--------------------CCcccee--eecCCeeeE---EEc
Q 018293          163 HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--------------------THSGFKW--AVAADVESL---AWD  217 (358)
Q Consensus       163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------------------~~~~~~~--~~~~~i~~~---~~~  217 (358)
                      . ---...+.+.+.. ..|++++.+..+.-|....-                    +.....+  .....+..+   .++
T Consensus       173 ~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~  250 (418)
T PF14727_consen  173 D-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFS  250 (418)
T ss_pred             C-CCCCcCeEEeecC-CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcC
Confidence            2 2223346777776 67888888888888865311                    1111111  122333333   333


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCce--eEE--EecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV--CTI--SYNPLVPNLLATGSTDKMVKLWDLSNN  293 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i--~~i--~~~~~~~~~l~~~~~dg~i~i~d~~~~  293 (358)
                      .....+++.|  ..++.+.+....        .+....+.......  ..+  ...|.....++.++.++.+.||.=.+-
T Consensus       251 ~~~~~IvvLg--er~Lf~l~~~G~--------l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L  320 (418)
T PF14727_consen  251 SSESDIVVLG--ERSLFCLKDNGS--------LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTL  320 (418)
T ss_pred             CCCceEEEEe--cceEEEEcCCCe--------EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeE
Confidence            2222233333  233444443211        01111221111111  111  112222235888899999999974332


Q ss_pred             CceeeEecCCCCceeEEEEEc--CCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          294 QPSCIASRNPKAGAVFSVAFS--EDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       294 ~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                          +........+| ++...  ++-+-++++-+.+|.+.+-=+.+...+.
T Consensus       321 ----~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~  366 (418)
T PF14727_consen  321 ----VWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLF  366 (418)
T ss_pred             ----EEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCccc
Confidence                22222222332 23222  2222378889999999998887765444

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=92.81  E-value=2.5  Score=29.95  Aligned_cols=108  Identities=19%  Similarity=0.175  Sum_probs=64.5

Q ss_pred             EecCCCCCcEEEEEEcCCeEEEEECCCCc--------eeeeecccccceeeEEEcC----CCCcEEEEEeCCCcEEEEEc
Q 018293          128 LAWNKEFRNILASASADKQVKIWDVAAGK--------CNLTLEHHTDKVQAVAWNH----HSPQILLSGSFDRSVVMKDA  195 (358)
Q Consensus       128 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~i~d~  195 (358)
                      -.|... ...|++++.-|.|.|++.....        .+..+. -...|++++-.+    ++...|+.|+ ...+..||+
T Consensus         4 GkfDG~-~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    4 GKFDGV-HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             EEeCCC-ceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence            345555 3468888888999999876432        233333 445677775433    2334555555 668999999


Q ss_pred             ccCCCccceeeecCCeeeEEEcC---CCCCeEEEEecCCeEEEEEccc
Q 018293          196 RISTHSGFKWAVAADVESLAWDP---HAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       196 ~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      ....... .......+.++.+-.   ....++++| .+..|.-||...
T Consensus        81 ~~N~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G  126 (136)
T PF14781_consen   81 ENNSDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEG  126 (136)
T ss_pred             ccCchhh-hhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCC
Confidence            8876654 344556677776522   123344444 456666666554

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.75  E-value=3.6  Score=31.67  Aligned_cols=105  Identities=10%  Similarity=0.058  Sum_probs=59.7

Q ss_pred             CCceEEecCCC--CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           64 KGNFMAVGSME--PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        64 ~~~~l~~g~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      +|.++.+.+.-  ..|++||+.+++......+.+  +                    .-....|+.+     +.....-.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~--------------------~~FgEGit~~-----gd~~y~LT  107 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--D--------------------TVFGEGITKL-----GDYFYQLT  107 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCC--c--------------------cccccceeec-----cceEEEEE
Confidence            56667666543  479999998776655433210  0                    0111223222     12233444


Q ss_pred             EcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC
Q 018293          142 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  199 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  199 (358)
                      -.+|....+|..+.+++..+. ..+.=..++-  ++ ..++.++...+++.-|.++..
T Consensus       108 w~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~--d~-~~LimsdGsatL~frdP~tfa  161 (262)
T COG3823         108 WKEGVAFKYDADTLEELGRFS-YEGEGWGLTS--DD-KNLIMSDGSATLQFRDPKTFA  161 (262)
T ss_pred             eccceeEEEChHHhhhhcccc-cCCcceeeec--CC-cceEeeCCceEEEecCHHHhh
Confidence            567888899998888877776 3344455543  44 335566556677777766543

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.67  E-value=4.8  Score=32.84  Aligned_cols=153  Identities=13%  Similarity=0.110  Sum_probs=94.1

Q ss_pred             cccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeeccc--ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC
Q 018293          122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH--TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  199 (358)
Q Consensus       122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  199 (358)
                      .+-+..+.++.+   +...+..+.-++|.|+.+......+...  .+.-.++..  .| +++..+..|.-+.+.|+.+.+
T Consensus        86 ~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sG-n~aYVadlddgfLivdvsdps  159 (370)
T COG5276          86 RDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SG-NYAYVADLDDGFLIVDVSDPS  159 (370)
T ss_pred             hhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cC-CEEEEeeccCcEEEEECCCCC
Confidence            345667777754   7777778888999999876543333211  133334443  45 778888877778889998876


Q ss_pred             Cccceeee---cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcE
Q 018293          200 HSGFKWAV---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNL  275 (358)
Q Consensus       200 ~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~  275 (358)
                      ........   ......++.+   +++...+..|+-+.+-|+....        .+...-.-. ...+.++..+++. .+
T Consensus       160 sP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~--------sPvli~~~n~g~g~~sv~vsdnr-~y  227 (370)
T COG5276         160 SPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPH--------SPVLIGSYNTGPGTYSVSVSDNR-AY  227 (370)
T ss_pred             CceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCC--------CCeEEEEEecCCceEEEEecCCe-eE
Confidence            65432221   2223456664   3477778889999999998763        333222222 3367888888754 44


Q ss_pred             EEEEeCCCcEEEEecCCCC
Q 018293          276 LATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       276 l~~~~~dg~i~i~d~~~~~  294 (358)
                      ++..  +--+.+-|..+..
T Consensus       228 ~vvy--~egvlivd~s~~s  244 (370)
T COG5276         228 LVVY--DEGVLIVDVSGPS  244 (370)
T ss_pred             EEEc--ccceEEEecCCCC
Confidence            4433  3346666766554

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=92.64  E-value=5  Score=32.99  Aligned_cols=97  Identities=14%  Similarity=0.234  Sum_probs=61.5

Q ss_pred             CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEe------CCCcEEEEEcccCCCcccee----eecCCeee
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS------FDRSVVMKDARISTHSGFKW----AVAADVES  213 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~----~~~~~i~~  213 (358)
                      -..|++||..+.+-..--.+-.+.|+++.|..+. ++++.|.      ....+..||..+..-.....    ...+++..
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a   93 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA   93 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence            3469999988776655555567889999998655 6676664      35568889987765322111    23577888


Q ss_pred             EEEcCCCC-CeEEEEe-cCC--eEEEEEcccC
Q 018293          214 LAWDPHAE-HSFVVSL-EDG--TIKGFDIRTA  241 (358)
Q Consensus       214 ~~~~~~~~-~~~~~~~-~dg--~i~i~d~~~~  241 (358)
                      +.+...+. ++.++|. .+|  .|..||=.+.
T Consensus        94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W  125 (281)
T PF12768_consen   94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSW  125 (281)
T ss_pred             EEeeccCCceEEEeceecCCCceEEEEcCCce
Confidence            88754443 3454544 333  4666665443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.64  E-value=0.64  Score=25.09  Aligned_cols=41  Identities=20%  Similarity=0.135  Sum_probs=27.1

Q ss_pred             CCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEE
Q 018293          132 KEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAW  173 (358)
Q Consensus       132 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~  173 (358)
                      |+++.++++...+++|.++|..+++.+..+... .....+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            454545555667899999999988887777642 33334444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.57  E-value=1.1  Score=35.35  Aligned_cols=78  Identities=12%  Similarity=0.190  Sum_probs=47.9

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCce-eecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPH-VILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      ..++++|++-+.+|.+++||+.+.....+. .+..-.+.            ..  ..-......|..+.++.+ +.-+++
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~------------~~--~~~~~~~~~i~~~~lt~~-G~PiV~   83 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNS------------SP--VSDKSSSPNITSCSLTSN-GVPIVT   83 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcc------------cc--cccCCCCCcEEEEEEcCC-CCEEEE
Confidence            347889999999999999999876655432 11000000            00  000045677888889877 444554


Q ss_pred             EEcCCeEEEEECCCC
Q 018293          141 ASADKQVKIWDVAAG  155 (358)
Q Consensus       141 ~~~dg~v~iwd~~~~  155 (358)
                      - .+|....|+..-+
T Consensus        84 l-sng~~y~y~~~L~   97 (219)
T PF07569_consen   84 L-SNGDSYSYSPDLG   97 (219)
T ss_pred             E-eCCCEEEeccccc
Confidence            4 4578888886543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=92.56  E-value=5.1  Score=32.93  Aligned_cols=94  Identities=15%  Similarity=0.204  Sum_probs=57.1

Q ss_pred             CCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEe------cCCeEEEEEcccCCCCCCCCCCCccEEEee--
Q 018293          187 DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--  258 (358)
Q Consensus       187 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--  258 (358)
                      -..|++||....+-...-....+.|+.+.|.. +..++++|.      ....+..||..+..          ...+..  
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~----------w~~~~~~~   83 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQT----------WSSLGGGS   83 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCe----------eeecCCcc
Confidence            34689999887665444445678899999985 455666663      35578889988652          222222  


Q ss_pred             ---cCCceeEEEecCC-CCcEEEEEe-CCCc--EEEEecC
Q 018293          259 ---HDKAVCTISYNPL-VPNLLATGS-TDKM--VKLWDLS  291 (358)
Q Consensus       259 ---~~~~i~~i~~~~~-~~~~l~~~~-~dg~--i~i~d~~  291 (358)
                         -.+++..+.+... +.++.++|. .++.  |..||=.
T Consensus        84 s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs  123 (281)
T PF12768_consen   84 SNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS  123 (281)
T ss_pred             cccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence               2467777777543 324555554 3444  5556543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=92.44  E-value=10  Score=36.21  Aligned_cols=65  Identities=11%  Similarity=0.059  Sum_probs=42.3

Q ss_pred             cEEEEEEcCCeEEEEECCCCceeeeeccccccee-------------eEEEcC--CCCcEEEEEeC----------CCcE
Q 018293          136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ-------------AVAWNH--HSPQILLSGSF----------DRSV  190 (358)
Q Consensus       136 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~~l~~~~~----------dg~i  190 (358)
                      ..++.++.|+.+.-.|.++|+....+.. .+.+.             .+.-.|  .+ ..+++++.          +|.|
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccccCCCcEE
Confidence            4788888999999999999998877642 11110             011111  12 34566643          6889


Q ss_pred             EEEEcccCCCcc
Q 018293          191 VMKDARISTHSG  202 (358)
Q Consensus       191 ~i~d~~~~~~~~  202 (358)
                      +-+|.++++..-
T Consensus       339 ~A~Da~TGkl~W  350 (764)
T TIGR03074       339 RAFDVNTGALVW  350 (764)
T ss_pred             EEEECCCCcEee
Confidence            999999887643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.33  E-value=7.1  Score=34.01  Aligned_cols=143  Identities=6%  Similarity=0.056  Sum_probs=83.7

Q ss_pred             CCCcEEEEEcccCC---CccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCc
Q 018293          186 FDRSVVMKDARIST---HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA  262 (358)
Q Consensus       186 ~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  262 (358)
                      ..|.+.-|.+....   .+.......++|.++.|++| +..+++--.++.|.+++....+...     .....-......
T Consensus        41 rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlD-nkilAVQR~~~~v~f~nf~~d~~~l-----~~~~~ck~k~~~  114 (657)
T KOG2377|consen   41 RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLD-NKILAVQRTSKTVDFCNFIPDNSQL-----EYTQECKTKNAN  114 (657)
T ss_pred             ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccC-cceEEEEecCceEEEEecCCCchhh-----HHHHHhccCcce
Confidence            34445555554332   22223345678999999995 5689999999999999985442110     112222333456


Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEc-cCCeEEEEEccCC
Q 018293          263 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSD  338 (358)
Q Consensus       263 i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~  338 (358)
                      |....|+...  -++..+..| +-+|-....+. .+.....|...|.=..|.++.+-+|.+.+ ..+.+.=+.++.+
T Consensus       115 IlGF~W~~s~--e~A~i~~~G-~e~y~v~pekr-slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  115 ILGFCWTSST--EIAFITDQG-IEFYQVLPEKR-SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             eEEEEEecCe--eEEEEecCC-eEEEEEchhhh-hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            8899999753  444444444 66666544321 34444556667777888888875555444 3444444444443

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=92.30  E-value=6.6  Score=33.57  Aligned_cols=41  Identities=24%  Similarity=0.336  Sum_probs=20.6

Q ss_pred             cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC
Q 018293          284 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK  327 (358)
Q Consensus       284 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  327 (358)
                      .+.+||..+.+...+..+...  .-...+..-+++ +++.|+.+
T Consensus       291 ~~e~yd~~~~~W~~~~~lp~~--~~~~~~~~~~~~-iyv~GG~~  331 (346)
T TIGR03547       291 SSEVYALDNGKWSKVGKLPQG--LAYGVSVSWNNG-VLLIGGEN  331 (346)
T ss_pred             EeeEEEecCCcccccCCCCCC--ceeeEEEEcCCE-EEEEeccC
Confidence            467888887664333322211  111223333555 67777765

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK13684 Ycf48-like protein; Provisional

Probab=92.05  E-value=6.9  Score=33.28  Aligned_cols=155  Identities=10%  Similarity=0.119  Sum_probs=79.9

Q ss_pred             ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC-C-CccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCC
Q 018293          165 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-T-HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK  242 (358)
Q Consensus       165 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~  242 (358)
                      ...+..+.+.|++ .++ ..+..|.+..- ...+ + -..........+..+.+.+++ ..++++ ..|.+++=....+.
T Consensus       172 ~g~~~~i~~~~~g-~~v-~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g-~~~~vg-~~G~~~~~s~d~G~  246 (334)
T PRK13684        172 AGVVRNLRRSPDG-KYV-AVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDG-NLWMLA-RGGQIRFNDPDDLE  246 (334)
T ss_pred             cceEEEEEECCCC-eEE-EEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCC-CEEEEe-cCCEEEEccCCCCC
Confidence            4568889999887 544 44556655432 1111 1 111122334568889998854 455554 56766432233221


Q ss_pred             CCCCCCCCCccEEE-eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec-CCCCceeEEEEEcCCCCeE
Q 018293          243 SDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-NPKAGAVFSVAFSEDSPFV  320 (358)
Q Consensus       243 ~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~  320 (358)
                      .      ....... ......+..+.+.|++ ..++ ++.+|.+. .....++....... ..-......+.|..+++ .
T Consensus       247 s------W~~~~~~~~~~~~~l~~v~~~~~~-~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~-~  316 (334)
T PRK13684        247 S------WSKPIIPEITNGYGYLDLAYRTPG-EIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK-G  316 (334)
T ss_pred             c------cccccCCccccccceeeEEEcCCC-CEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCc-e
Confidence            1      0110000 0012346788898866 5544 45577654 34444442111111 12224577888887776 4


Q ss_pred             EEEEccCCeEEEEEc
Q 018293          321 LAIGGSKGKLEIWDT  335 (358)
Q Consensus       321 l~~~~~dg~i~vw~~  335 (358)
                      ++ .+..|.|.-|+-
T Consensus       317 ~~-~G~~G~il~~~~  330 (334)
T PRK13684        317 FV-LGQRGVLLRYVG  330 (334)
T ss_pred             EE-ECCCceEEEecC
Confidence            55 567788877753

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.93  E-value=1  Score=41.26  Aligned_cols=39  Identities=26%  Similarity=0.483  Sum_probs=27.7

Q ss_pred             ccEEEEecCC---CCCcEEEEEEcCCeEEEEECCCCceeeee
Q 018293          123 DSVLGLAWNK---EFRNILASASADKQVKIWDVAAGKCNLTL  161 (358)
Q Consensus       123 ~~v~~~~~~~---~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  161 (358)
                      ..+..+++..   ++..++++.+.|+++|+||+.+++++.+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            3445555554   23679999999999999999999986654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.89  E-value=3.2  Score=31.33  Aligned_cols=32  Identities=19%  Similarity=0.418  Sum_probs=26.2

Q ss_pred             ccEEEEecCCCC-----CcEEEEEEcCCeEEEEECCC
Q 018293          123 DSVLGLAWNKEF-----RNILASASADKQVKIWDVAA  154 (358)
Q Consensus       123 ~~v~~~~~~~~~-----~~~l~s~~~dg~v~iwd~~~  154 (358)
                      ..|..++|||.|     +-+|++.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            479999999953     45889999999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.89  E-value=3.6  Score=40.55  Aligned_cols=164  Identities=13%  Similarity=0.182  Sum_probs=92.6

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEc--------CCCCcEEEEEeCCCcEEE
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN--------HHSPQILLSGSFDRSVVM  192 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~l~~~~~dg~i~i  192 (358)
                      |...=+.+-+-|.=+..-+  +-|+.+.+|+.+++.....+.+....|..+..-        |.= ++++....--.|.+
T Consensus        77 ~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I-qhlLvvaT~~ei~i  153 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI-QHLLVVATPVEIVI  153 (1311)
T ss_pred             CcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh-heeEEecccceEEE
Confidence            3333344444444233333  457899999999987778887777777776542        222 23333333445666


Q ss_pred             EEcccCCCc----cce-----eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCC-----------CC----C
Q 018293          193 KDARISTHS----GFK-----WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP-----------DS----T  248 (358)
Q Consensus       193 ~d~~~~~~~----~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~-----------~~----~  248 (358)
                      +-+...+..    ...     ......|.++.... +++.|++| .||  .+|.+.-.....           ..    .
T Consensus       154 lgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~-nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~  229 (1311)
T KOG1900|consen  154 LGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTE-NGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSS  229 (1311)
T ss_pred             EEEEeccccCcccccccceeeecCCceEEEEEecc-CCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHH
Confidence            544322211    101     11244577888444 55455555 566  444443211100           00    0


Q ss_pred             CCCccEEEe-ecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293          249 SQQSSFTLH-AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  292 (358)
Q Consensus       249 ~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~  292 (358)
                      -...+..+. .+..+|..+.+.... +.+.+-+..|+|.+||+..
T Consensus       230 lvPs~~~~~~~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  230 LVPSLLSVPGSSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhhhhhcCCCCCCCcceeeEecccc-ceeeeeccCceEEEEEccC
Confidence            001122233 567799999999866 8999999999999999977

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=91.87  E-value=6.5  Score=32.57  Aligned_cols=175  Identities=10%  Similarity=0.078  Sum_probs=88.8

Q ss_pred             eEEEEECCCCceeeeecc------cccceeeEEEcCCCC----cEE-EEEeCCCcEEEEEcccCCCccce----------
Q 018293          146 QVKIWDVAAGKCNLTLEH------HTDKVQAVAWNHHSP----QIL-LSGSFDRSVVMKDARISTHSGFK----------  204 (358)
Q Consensus       146 ~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~----~~l-~~~~~dg~i~i~d~~~~~~~~~~----------  204 (358)
                      .+.+||+++++.++++.-      ..+.+..+.+....+    .++ ++=+..+.|.++|+.+++..+..          
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            577788888887766642      235667777765321    233 33344568999999876532211          


Q ss_pred             ---------eeecCCeeeEEEcC---CCCCeEEEEecCCeEEEEEcccCCCCCCCCC-----CCccEEEeecCCceeEEE
Q 018293          205 ---------WAVAADVESLAWDP---HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS-----QQSSFTLHAHDKAVCTIS  267 (358)
Q Consensus       205 ---------~~~~~~i~~~~~~~---~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~i~  267 (358)
                               ......+..++.+|   ++ ..++-..-.+ -++|.+.+.........     ...+..+.........++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~-r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~  192 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDG-RWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA  192 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCc-cEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence                     11223355566655   22 2344333222 12333332211110000     011222222224567788


Q ss_pred             ecCCCCcEEEEEeCCCcEEEEecCC----CCceeeEecCCCCceeEEEEEcC--CCCeEEEEE
Q 018293          268 YNPLVPNLLATGSTDKMVKLWDLSN----NQPSCIASRNPKAGAVFSVAFSE--DSPFVLAIG  324 (358)
Q Consensus       268 ~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~  324 (358)
                      ++++| .++++--..+.|..|+..+    .....+..-...-..+..+.+.+  +|. +.+..
T Consensus       193 ~D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~s  253 (287)
T PF03022_consen  193 IDPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY-LWVLS  253 (287)
T ss_dssp             EETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS--EEEEE
T ss_pred             ECCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce-EEEEE
Confidence            99987 8888888899999999886    22222222222245678889988  776 45443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.82  E-value=7.7  Score=34.43  Aligned_cols=29  Identities=7%  Similarity=-0.142  Sum_probs=21.8

Q ss_pred             cccEEEEecCCCCCcEEEEEEcCCeEEEEE
Q 018293          122 TDSVLGLAWNKEFRNILASASADKQVKIWD  151 (358)
Q Consensus       122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd  151 (358)
                      .-.|..+..++. +..++-.+.+|.+.++=
T Consensus       103 ~feV~~vl~s~~-GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  103 LFEVYQVLLSPT-GSHVALIGIKGLMVMEL  131 (741)
T ss_pred             eEEEEEEEecCC-CceEEEecCCeeEEEEc
Confidence            456888889999 55777777888766654

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.72  E-value=7.3  Score=32.90  Aligned_cols=22  Identities=18%  Similarity=0.149  Sum_probs=15.1

Q ss_pred             cEEEEEeCCCc----EEEEecCCCCc
Q 018293          274 NLLATGSTDKM----VKLWDLSNNQP  295 (358)
Q Consensus       274 ~~l~~~~~dg~----i~i~d~~~~~~  295 (358)
                      .+.+.|+.++.    +.+||..+.+.
T Consensus       173 ~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       173 ELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             EEEEEcCCCCccccceEEEecCCCee
Confidence            67777776542    56889888764

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.69  E-value=12  Score=37.15  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=22.1

Q ss_pred             cCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293          269 NPLVPNLLATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       269 ~~~~~~~l~~~~~dg~i~i~d~~~~~  294 (358)
                      .+++ ..++++..||.+..||...++
T Consensus       243 ~~~~-~~~v~~h~Dgs~~fWd~s~g~  267 (993)
T KOG1983|consen  243 SRDG-SHFVSYHTDGSYAFWDVSSGK  267 (993)
T ss_pred             ccCC-ceEEEEEecCCEEeeecCCCc
Confidence            6766 899999999999999998864

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.53  E-value=8.8  Score=33.46  Aligned_cols=151  Identities=11%  Similarity=0.120  Sum_probs=74.4

Q ss_pred             eeEEEcCCCCcEEEEEeCCCcEE-EEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCC
Q 018293          169 QAVAWNHHSPQILLSGSFDRSVV-MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS  247 (358)
Q Consensus       169 ~~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~  247 (358)
                      ..+..++++ .+++.+. .|.+. -||--...-..........+..+.+.+++. +++++ .+|.+.. ....+....  
T Consensus       242 ~~v~~~~dG-~~~~vg~-~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~g-~~G~l~~-S~d~G~~~~--  314 (398)
T PLN00033        242 STVNRSPDG-DYVAVSS-RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG-LWLLT-RGGGLYV-SKGTGLTEE--  314 (398)
T ss_pred             eeEEEcCCC-CEEEEEC-CccEEEecCCCCcceEEecCCCccceeeeeEcCCCC-EEEEe-CCceEEE-ecCCCCccc--
Confidence            344556665 4444443 44433 233211100111233345678899988543 44444 6666543 322221000  


Q ss_pred             CCCCccEEEee--cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe-cCCCCceeEEEEEcCCCCeEEEEE
Q 018293          248 TSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIG  324 (358)
Q Consensus       248 ~~~~~~~~~~~--~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~  324 (358)
                        .........  ....+.++.+.+++ .. ++++..|.+.... ..++...... ...-...++.+.|.++++ .++ .
T Consensus       315 --~~~f~~~~~~~~~~~l~~v~~~~d~-~~-~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~-~  387 (398)
T PLN00033        315 --DFDFEEADIKSRGFGILDVGYRSKK-EA-WAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFV-L  387 (398)
T ss_pred             --ccceeecccCCCCcceEEEEEcCCC-cE-EEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEE-E
Confidence              001111111  12358889999876 44 4455678666553 3443211111 122345688999988777 355 4


Q ss_pred             ccCCeEEEE
Q 018293          325 GSKGKLEIW  333 (358)
Q Consensus       325 ~~dg~i~vw  333 (358)
                      +.+|.|.-|
T Consensus       388 G~~G~il~~  396 (398)
T PLN00033        388 GNDGVLLRY  396 (398)
T ss_pred             eCCcEEEEe
Confidence            667877655

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.24  E-value=6.9  Score=31.66  Aligned_cols=238  Identities=12%  Similarity=0.060  Sum_probs=122.9

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      .++-+|||..-.++...|.|--.|-.+++....                           --+....-..|..-|++...
T Consensus        66 dvapapdG~VWft~qg~gaiGhLdP~tGev~~y---------------------------pLg~Ga~Phgiv~gpdg~~W  118 (353)
T COG4257          66 DVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY---------------------------PLGSGASPHGIVVGPDGSAW  118 (353)
T ss_pred             ccccCCCCceEEecCccccceecCCCCCceEEE---------------------------ecCCCCCCceEEECCCCCee
Confidence            344467776666666666555555544333221                           11233445566777885544


Q ss_pred             EEEEEcCCeEEEEECCCCceee-e--ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeE
Q 018293          138 LASASADKQVKIWDVAAGKCNL-T--LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  214 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~-~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  214 (358)
                      +.-.+.  .|.-.|-++.+..+ .  .+.-........|.+.| ++-+++.. |.---.|..+................|
T Consensus       119 itd~~~--aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G-~lWFt~q~-G~yGrLdPa~~~i~vfpaPqG~gpyGi  194 (353)
T COG4257         119 ITDTGL--AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWG-NLWFTGQI-GAYGRLDPARNVISVFPAPQGGGPYGI  194 (353)
T ss_pred             EecCcc--eeEEecCcccceEEeecccccCCCcccceeeCCCc-cEEEeecc-ccceecCcccCceeeeccCCCCCCcce
Confidence            432222  45555665554321 1  12233556778899998 77777652 211111221111111111233456678


Q ss_pred             EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293          215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~  294 (358)
                      +..|+++ ..++.-.++.|...|......       +.+..-......-..+-.+|.+ +.-++-...+.+.-||.....
T Consensus       195 ~atpdGs-vwyaslagnaiaridp~~~~a-------ev~p~P~~~~~gsRriwsdpig-~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         195 CATPDGS-VWYASLAGNAIARIDPFAGHA-------EVVPQPNALKAGSRRIWSDPIG-RAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             EECCCCc-EEEEeccccceEEcccccCCc-------ceecCCCcccccccccccCccC-cEEEeccCCceeeEeCccccc
Confidence            8888665 566655666777777766521       1111112212334556666766 666666667788888876654


Q ss_pred             ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          295 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       295 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      . ....+.+....-.++.....++ +..+--.-|.|.-+|-++
T Consensus       266 W-~eypLPgs~arpys~rVD~~gr-VW~sea~agai~rfdpet  306 (353)
T COG4257         266 W-IEYPLPGSKARPYSMRVDRHGR-VWLSEADAGAIGRFDPET  306 (353)
T ss_pred             c-eeeeCCCCCCCcceeeeccCCc-EEeeccccCceeecCccc
Confidence            2 3344444444555666666665 343333345555555543

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=90.99  E-value=9.8  Score=33.00  Aligned_cols=50  Identities=18%  Similarity=0.169  Sum_probs=24.9

Q ss_pred             EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC------eEEEEEccC
Q 018293          285 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG------KLEIWDTLS  337 (358)
Q Consensus       285 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~vw~~~~  337 (358)
                      +.+||..+.+...+..+.......  .+..-++. +++.|+...      .|..++.+.
T Consensus       314 ~e~yd~~~~~W~~~~~lp~~r~~~--~av~~~~~-iyv~GG~~~~~~~~~~v~~~~~~~  369 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQGLAYG--VSVSWNNG-VLLIGGETAGGKAVSDVTLLSWDG  369 (376)
T ss_pred             hheEEecCCcccccCcCCCCccce--EEEEeCCE-EEEEcCCCCCCcEeeeEEEEEEcC
Confidence            457888877643333222111112  23333455 677777542      455555554

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.99  E-value=10  Score=37.58  Aligned_cols=74  Identities=15%  Similarity=0.103  Sum_probs=42.6

Q ss_pred             eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       257 ~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      ..+..++.+..+....  -.+.+...+.+.+|+.............+       ..+++++. .++++..||.+.+||..
T Consensus       195 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~v~~h~Dgs~~fWd~s  264 (993)
T KOG1983|consen  195 SLIEYESLQVLYYSPT--KILIGFNRGLVVIKDRASKYVQSAYLPNG-------QLESRDGS-HFVSYHTDGSYAFWDVS  264 (993)
T ss_pred             cccccccceeeeecCC--Ccceeeeeeeeeehhcccccchhhccccc-------ccCccCCc-eEEEEEecCCEEeeecC
Confidence            3344455555544433  23344445666666654433111111111       12278888 69999999999999999


Q ss_pred             CCCc
Q 018293          337 SDAG  340 (358)
Q Consensus       337 ~~~~  340 (358)
                      .++.
T Consensus       265 ~g~~  268 (993)
T KOG1983|consen  265 SGKL  268 (993)
T ss_pred             CCce
Confidence            8754

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.74  E-value=15  Score=34.81  Aligned_cols=36  Identities=11%  Similarity=0.317  Sum_probs=29.7

Q ss_pred             CCcccEEEEecCCCC--CcEEEEEEcCCeEEEEECCCC
Q 018293          120 SHTDSVLGLAWNKEF--RNILASASADKQVKIWDVAAG  155 (358)
Q Consensus       120 ~h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~  155 (358)
                      .+...|..+.|+|.+  +..|+.-..|+++++||+...
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            456789999999974  468888899999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.40  E-value=7  Score=30.36  Aligned_cols=102  Identities=12%  Similarity=0.135  Sum_probs=64.2

Q ss_pred             cEEEEEEcCCeEEEEECC--CCceeeeecccccceeeEEEcCCCCcEEEEEeCCC------cEEEE---EcccC--CCcc
Q 018293          136 NILASASADKQVKIWDVA--AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR------SVVMK---DARIS--THSG  202 (358)
Q Consensus       136 ~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~i~---d~~~~--~~~~  202 (358)
                      ..|+.+...+.|.+|++.  ..+...++.. -+.|..+.++..| +++++--.+.      .+++|   +....  ....
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            345454667889999988  3355666663 3789999999999 8888865432      44553   32211  1100


Q ss_pred             ----------------------ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293          203 ----------------------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  241 (358)
Q Consensus       203 ----------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~  241 (358)
                                            .......++.+++..|..+++++.+  ++.+.+|.+...
T Consensus       107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~  165 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ  165 (215)
T ss_pred             EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence                                  0112244678888888777655443  567889988765

>PLN02193 nitrile-specifier protein

Probab=90.32  E-value=13  Score=33.38  Aligned_cols=102  Identities=9%  Similarity=0.088  Sum_probs=48.2

Q ss_pred             CcEEEEEEcC-----CeEEEEECCCCceee--eec--ccccceeeEEEcCCCCcEEEEEeCCC-----cEEEEEcccCCC
Q 018293          135 RNILASASAD-----KQVKIWDVAAGKCNL--TLE--HHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTH  200 (358)
Q Consensus       135 ~~~l~s~~~d-----g~v~iwd~~~~~~~~--~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~  200 (358)
                      +.+.+.|+.+     ..+..||+.+.+-..  ...  .....-.++.. -++ .+++.|+.++     .+..||+.+.+-
T Consensus       229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~-~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEE-NVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECC-EEEEECCCCCCCCcceEEEEECCCCEE
Confidence            4466666654     358888988764322  110  01111112222 233 6677776543     356677665431


Q ss_pred             ccce-----eeecCCeeeEEEcCCCCCeEEEEecC----CeEEEEEcccC
Q 018293          201 SGFK-----WAVAADVESLAWDPHAEHSFVVSLED----GTIKGFDIRTA  241 (358)
Q Consensus       201 ~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~d----g~i~i~d~~~~  241 (358)
                      ....     .........+.+   ++.+++.++.+    ..+.+||+.+.
T Consensus       307 ~~~~~~~~~~~~R~~~~~~~~---~gkiyviGG~~g~~~~dv~~yD~~t~  353 (470)
T PLN02193        307 FHCSTPGDSFSIRGGAGLEVV---QGKVWVVYGFNGCEVDDVHYYDPVQD  353 (470)
T ss_pred             EeCCCCCCCCCCCCCcEEEEE---CCcEEEEECCCCCccCceEEEECCCC
Confidence            1100     000111112222   34466666654    45888998765

>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]

Probab=89.42  E-value=13  Score=32.09  Aligned_cols=183  Identities=15%  Similarity=0.119  Sum_probs=101.2

Q ss_pred             eEEEEECCCCceeeeecc--cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCe
Q 018293          146 QVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS  223 (358)
Q Consensus       146 ~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  223 (358)
                      .+.+.| +....+..+.+  ....|.++.|..+- -++++--+-.-+.+.|+...+.........-+-.+--.+|-+++.
T Consensus       407 ~vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv-~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~  484 (603)
T COG4880         407 AVYILD-ENLNVVGKLTGLAPGERIYAVRFVGDV-LYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENR  484 (603)
T ss_pred             eeEEEc-CCCcEEEEEeccCCCceEEEEEEeCce-EEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCc
Confidence            344444 33445555543  45789999998876 678887777789999999888776555544444444566766555


Q ss_pred             EE-EEecCCe--EEEEEcccCCCCCCCCCCCccEEEeecC----CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce
Q 018293          224 FV-VSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHD----KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  296 (358)
Q Consensus       224 ~~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  296 (358)
                      ++ +|..+|.  |.+||+.......+    .....+..--    ..-.+..|.|..+-+++-+...|.  |+.++.+.  
T Consensus       485 ~lGvG~~~g~vKiSLFdiSdl~~PkE----v~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~gy--if~iedg~--  556 (603)
T COG4880         485 LLGVGAYQGGVKISLFDISDLAAPKE----VSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGGY--IFFIEDGS--  556 (603)
T ss_pred             EEEeecccCCceEEEEeccCCCCchh----hhheehhhhcchhhhccceeecCCcccEEEecccCccE--EEEEecCc--
Confidence            54 5666775  55688876532111    0011111100    011234455544334444444554  45555553  


Q ss_pred             eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      .+.....|.......-|..|-  +...|+.  .+.++|-.+.+.+.
T Consensus       557 kl~k~~e~k~na~RA~fi~dy--lY~vg~~--ev~~ldenswe~Vg  598 (603)
T COG4880         557 KLRKRAERKLNADRAFFIKDY--LYLVGGN--EVWKLDENSWEVVG  598 (603)
T ss_pred             eeeehhhhcccceeeEEecce--EEEeccc--eeEEeccchHhhhh
Confidence            334444566666666676664  3333432  47777766666554

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=89.39  E-value=17  Score=33.17  Aligned_cols=179  Identities=12%  Similarity=0.024  Sum_probs=104.8

Q ss_pred             eEEEEECCCCceeeeec--ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCe
Q 018293          146 QVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS  223 (358)
Q Consensus       146 ~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  223 (358)
                      .|.+.| ++.+.+..+.  +....|.++.|--+. -+++|--.---+.+.|+...+.....-..+-+-.+=-+||-++++
T Consensus       305 ~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~-~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP~~e~~  382 (521)
T PF09826_consen  305 NLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDR-AYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHPYDENH  382 (521)
T ss_pred             EEEEEC-CCCcEeEEccccCCCceEEEEEEeCCe-EEEEEEeecCceEEEECCCCCCCceeeEEECccchhceeECCCCe
Confidence            466666 5555555554  245789999998877 678877776779999999988777665555555555566755555


Q ss_pred             EEEEecC------------CeEEEEEcccCCCCCCCCCCCccEEEee-c-------CCceeEEEecCCCCcEEEEEeC--
Q 018293          224 FVVSLED------------GTIKGFDIRTAKSDPDSTSQQSSFTLHA-H-------DKAVCTISYNPLVPNLLATGST--  281 (358)
Q Consensus       224 ~~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~-~-------~~~i~~i~~~~~~~~~l~~~~~--  281 (358)
                      |+.-+.+            =.|.+||+......      +.+....- .       ...-.++.|.+.. ++|+.--.  
T Consensus       383 LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P------~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~-~ll~~Pv~~~  455 (521)
T PF09826_consen  383 LLGIGKDTDEDEGTGWTQGLKISLFDVSDPANP------KELDKEVIGDRGSYSEALYDHKAFLFDKEK-NLLAFPVSSS  455 (521)
T ss_pred             EEEEcccCcccccccccceeEEEEEecCCCCCc------cEeEEEEcCCCCccCccccCceEEEEeCCC-CEEEEEEEEc
Confidence            5553332            14778999876431      11111111 0       0112467777765 55543222  


Q ss_pred             -----CCcEEEEecCC-CCceeeEecCCCCc-------eeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          282 -----DKMVKLWDLSN-NQPSCIASRNPKAG-------AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       282 -----dg~i~i~d~~~-~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                           -..+.++++.. ......... .|..       .+....+..|.   |.+.+ ++.|+++|+.+.
T Consensus       456 ~~~~~~~g~~v~~i~~~~g~~~~g~i-~h~~~~~~~~~~~~R~lyi~d~---lYtvS-~~~i~~~~l~t~  520 (521)
T PF09826_consen  456 YGYFNFQGAYVFSIDPEDGFTLKGKI-THPSPDYYYSYQIQRSLYIGDT---LYTVS-DNGIKAYDLNTL  520 (521)
T ss_pred             cCccccceEEEEEEeCCCCeEEEEEE-EccCcccccccceeEEEEECCE---EEEEE-CCEEEEEehHhc
Confidence                 13377888873 322222222 2333       36666666663   44444 467999998764

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.19  E-value=2.2  Score=39.12  Aligned_cols=69  Identities=17%  Similarity=0.108  Sum_probs=40.1

Q ss_pred             cEEEEEeCCCcEEEEecCC----CCceeeEecC--------------------CCCceeEEEEEcC----CCCeEEEEEc
Q 018293          274 NLLATGSTDKMVKLWDLSN----NQPSCIASRN--------------------PKAGAVFSVAFSE----DSPFVLAIGG  325 (358)
Q Consensus       274 ~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~--------------------~~~~~v~~~~~~~----~~~~~l~~~~  325 (358)
                      ..++.+..||.+.......    +.......+.                    ........++++.    +.. ++++.+
T Consensus       159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~tl~  237 (547)
T PF11715_consen  159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDT-FLFTLS  237 (547)
T ss_dssp             SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTT-EEEEEE
T ss_pred             CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCC-EEEEEe
Confidence            6677778888887777664    1111110010                    1123455566665    455 588899


Q ss_pred             cCCeEEEEEccCCCcccc
Q 018293          326 SKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       326 ~dg~i~vw~~~~~~~~~~  343 (358)
                      .|+.+|+||+.+++++..
T Consensus       238 ~D~~LRiW~l~t~~~~~~  255 (547)
T PF11715_consen  238 RDHTLRIWSLETGQCLAT  255 (547)
T ss_dssp             TTSEEEEEETTTTCEEEE
T ss_pred             CCCeEEEEECCCCeEEEE
Confidence            999999999999998554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=89.18  E-value=12  Score=31.29  Aligned_cols=240  Identities=15%  Similarity=0.073  Sum_probs=110.3

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      ++++|+.|+++|...+. ++... ...                          ....+...|+++...+..+.+++-++.
T Consensus        12 ~~~~lL~GTe~Gly~~~-~~~~~-~~~--------------------------~kl~~~~~v~q~~v~~~~~lLi~Lsgk   63 (302)
T smart00036       12 DGKWLLVGTEEGLYVLN-ISDQP-GTL--------------------------EKLIGRRSVTQIWVLEENNVLLMISGK   63 (302)
T ss_pred             CCcEEEEEeCCceEEEE-cccCC-CCe--------------------------EEecCcCceEEEEEEhhhCEEEEEeCC
Confidence            44789999999976554 54211 011                          111356789999998884434444444


Q ss_pred             CCeEEEEECCCCce---------------eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC--CCccce--
Q 018293          144 DKQVKIWDVAAGKC---------------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGFK--  204 (358)
Q Consensus       144 dg~v~iwd~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~--  204 (358)
                      ...++.+++..-..               ....-.+................++++....+|.++.....  +.....  
T Consensus        64 ~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~  143 (302)
T smart00036       64 KPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSK  143 (302)
T ss_pred             cceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhccc
Confidence            45599999842221               00111233323333333222234455555667777654332  111110  


Q ss_pred             ----eeecCCeeeEEEcCC-CCCeEEEEecCCeEEEEEccc--CCCCCCCCCCCccEEEeecC-CceeEEEecCCCCcEE
Q 018293          205 ----WAVAADVESLAWDPH-AEHSFVVSLEDGTIKGFDIRT--AKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLL  276 (358)
Q Consensus       205 ----~~~~~~i~~~~~~~~-~~~~~~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l  276 (358)
                          .....++..+..+++ ....+.+|+..+...++++..  .....    ........... .++....+. ++ .+|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d----~sl~~~~~~~~~~p~~i~~l~-~~-e~L  217 (302)
T smart00036      144 FLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKED----LSLPFLSEETSLKPISVVQVP-RD-EFL  217 (302)
T ss_pred             ccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccc----ccccccccccccCceEEEEEC-CC-eEE
Confidence                011123333332332 234677776653344455533  11000    00000111111 344444443 33 454


Q ss_pred             EEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          277 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       277 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      ++ - |....+-|....+......+. -.....++++..  .|+++.  .+..|.++++.+++.+...
T Consensus       218 lc-~-~~~~v~Vn~~G~~~~r~~~l~-w~~~p~~~~~~~--pyll~~--~~~~ievr~l~~~~l~q~i  278 (302)
T smart00036      218 LC-Y-DEFGVFVNLYGKRRSRNPILH-WEFMPESFAYHS--PYLLAF--HDNGIEIRSIKTGELLQEL  278 (302)
T ss_pred             EE-E-CcEEEEEeCCCCccccceEEE-cCCcccEEEEEC--CEEEEE--cCCcEEEEECCCCceEEEE
Confidence            44 3 334445555541111111111 123455667764  555553  3556999999998765543

Unpublished observations.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.11  E-value=0.88  Score=24.52  Aligned_cols=31  Identities=13%  Similarity=0.144  Sum_probs=24.1

Q ss_pred             CCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          315 EDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       315 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      |++++++++.-.++.|.++|..+++.+.+.-
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            5777777777788999999998877665533

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.10  E-value=8.9  Score=29.65  Aligned_cols=180  Identities=13%  Similarity=0.071  Sum_probs=86.5

Q ss_pred             CcEEEEEEcC--CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCee
Q 018293          135 RNILASASAD--KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVE  212 (358)
Q Consensus       135 ~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  212 (358)
                      +.++.+.+.-  ..|++||+.+++.+..-.-....+..=-...-++.+..-.-.+|.-..+|.++-+... ....++.-.
T Consensus        56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg-~~~y~GeGW  134 (262)
T COG3823          56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG-RFSYEGEGW  134 (262)
T ss_pred             CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhc-ccccCCcce
Confidence            4566665543  4699999999987655432211221111112222344445567888889988776654 233344444


Q ss_pred             eEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcEEEEEeCCCcEEEEecC
Q 018293          213 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  291 (358)
Q Consensus       213 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~  291 (358)
                      .++-.  +.+ ++.+.....++.-|..+-....     .......+. -..++.+.|-. | .+.+-.=.+..|...|..
T Consensus       135 gLt~d--~~~-LimsdGsatL~frdP~tfa~~~-----~v~VT~~g~pv~~LNELE~Vd-G-~lyANVw~t~~I~rI~p~  204 (262)
T COG3823         135 GLTSD--DKN-LIMSDGSATLQFRDPKTFAELD-----TVQVTDDGVPVSKLNELEWVD-G-ELYANVWQTTRIARIDPD  204 (262)
T ss_pred             eeecC--Ccc-eEeeCCceEEEecCHHHhhhcc-----eEEEEECCeecccccceeeec-c-EEEEeeeeecceEEEcCC
Confidence            55433  343 5555445566666665542110     111111110 11223333332 2 222222223333334444


Q ss_pred             CCCceeeE----------ecCCCCceeEEEEEcCCCCeEEEEEc
Q 018293          292 NNQPSCIA----------SRNPKAGAVFSVAFSEDSPFVLAIGG  325 (358)
Q Consensus       292 ~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~l~~~~  325 (358)
                      +++.....          ....+....+.+++.|++..++++|-
T Consensus       205 sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         205 SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence            44422221          22234556888999998855787764

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=88.88  E-value=13  Score=32.21  Aligned_cols=10  Identities=20%  Similarity=0.351  Sum_probs=7.3

Q ss_pred             eEEEEEcccC
Q 018293          232 TIKGFDIRTA  241 (358)
Q Consensus       232 ~i~i~d~~~~  241 (358)
                      .+.+||..+.
T Consensus       190 ~v~~YD~~t~  199 (376)
T PRK14131        190 EVLSYDPSTN  199 (376)
T ss_pred             eEEEEECCCC
Confidence            5788887764

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.70  E-value=2.3  Score=22.47  Aligned_cols=31  Identities=6%  Similarity=0.079  Sum_probs=21.0

Q ss_pred             ecCCceeEEEecCCCCcEEEEEeCC--CcEEEE
Q 018293          258 AHDKAVCTISYNPLVPNLLATGSTD--KMVKLW  288 (358)
Q Consensus       258 ~~~~~i~~i~~~~~~~~~l~~~~~d--g~i~i~  288 (358)
                      .....-....|+|||..++.+...+  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3445667899999996666777777  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=88.41  E-value=5.7  Score=29.99  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=26.3

Q ss_pred             CceeEEEecCCC-----CcEEEEEeCCCcEEEEecCC
Q 018293          261 KAVCTISYNPLV-----PNLLATGSTDKMVKLWDLSN  292 (358)
Q Consensus       261 ~~i~~i~~~~~~-----~~~l~~~~~dg~i~i~d~~~  292 (358)
                      ..+.+++|+|.|     .-+|++.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478999999943     35888899999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PRK13684 Ycf48-like protein; Provisional

Probab=87.88  E-value=16  Score=31.11  Aligned_cols=150  Identities=8%  Similarity=0.020  Sum_probs=77.9

Q ss_pred             cccEEEEecCCCCCcEEEEEEcCCeEEE-EECCCCc-eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC
Q 018293          122 TDSVLGLAWNKEFRNILASASADKQVKI-WDVAAGK-CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  199 (358)
Q Consensus       122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~i-wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  199 (358)
                      ...+.++.+.|+ +.++++ +..|.+.. +| ..++ -......-...++++.+.+++ ..+++ +..|.+++-....+.
T Consensus       172 ~g~~~~i~~~~~-g~~v~~-g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g-~~~~v-g~~G~~~~~s~d~G~  246 (334)
T PRK13684        172 AGVVRNLRRSPD-GKYVAV-SSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDG-NLWML-ARGGQIRFNDPDDLE  246 (334)
T ss_pred             cceEEEEEECCC-CeEEEE-eCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCC-CEEEE-ecCCEEEEccCCCCC
Confidence            457889999988 545544 44565443 22 1222 112222344678899999987 65554 456766542222222


Q ss_pred             Cccc-ee---eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe---ecCCceeEEEecCCC
Q 018293          200 HSGF-KW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLV  272 (358)
Q Consensus       200 ~~~~-~~---~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~  272 (358)
                      .-.. ..   .....+..+.+.++ +. +++.+.+|.+.. ....+         .......   .-......+.+..++
T Consensus       247 sW~~~~~~~~~~~~~l~~v~~~~~-~~-~~~~G~~G~v~~-S~d~G---------~tW~~~~~~~~~~~~~~~~~~~~~~  314 (334)
T PRK13684        247 SWSKPIIPEITNGYGYLDLAYRTP-GE-IWAGGGNGTLLV-SKDGG---------KTWEKDPVGEEVPSNFYKIVFLDPE  314 (334)
T ss_pred             ccccccCCccccccceeeEEEcCC-CC-EEEEcCCCeEEE-eCCCC---------CCCeECCcCCCCCcceEEEEEeCCC
Confidence            1110 11   11234678888884 33 445556776543 33333         1122211   112356777777655


Q ss_pred             CcEEEEEeCCCcEEEEec
Q 018293          273 PNLLATGSTDKMVKLWDL  290 (358)
Q Consensus       273 ~~~l~~~~~dg~i~i~d~  290 (358)
                       ..++ .+..|.|-.|+-
T Consensus       315 -~~~~-~G~~G~il~~~~  330 (334)
T PRK13684        315 -KGFV-LGQRGVLLRYVG  330 (334)
T ss_pred             -ceEE-ECCCceEEEecC
Confidence             4544 455788776653

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=86.69  E-value=9.8  Score=35.46  Aligned_cols=185  Identities=17%  Similarity=0.118  Sum_probs=0.0

Q ss_pred             CCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCC
Q 018293          152 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  231 (358)
Q Consensus       152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg  231 (358)
                      +++.++....+ ....++++.-+|.+ +.++.+..||+|++|+........ ......+-..+.|...+   +++.+.|.
T Consensus         2 ikt~~~s~~~k-~~e~~~aiqshp~~-~s~v~~~~d~si~lfn~~~r~qsk-i~~~~~p~~nlv~tnhg---l~~~tsdr   75 (1636)
T KOG3616|consen    2 IKTFDCSRDPK-EDEFTTAIQSHPGG-QSFVLAHQDGSIILFNFIPRRQSK-ICEEAKPKENLVFTNHG---LVTATSDR   75 (1636)
T ss_pred             CccccccCCcc-ccceeeeeeecCCC-ceEEEEecCCcEEEEeecccchhh-hhhhcCCccceeeeccc---eEEEeccc


Q ss_pred             eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC------------------------CcEEE
Q 018293          232 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD------------------------KMVKL  287 (358)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d------------------------g~i~i  287 (358)
                      .+.-|.-..--.       +...--........++...|...+.+-+-+..                        ..|.+
T Consensus        76 r~la~~~dgvvq-------qqfdyndqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvil  148 (1636)
T KOG3616|consen   76 RALAWKEDGVVQ-------QQFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVIL  148 (1636)
T ss_pred             hhheeeccCcch-------hhccccchhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeee


Q ss_pred             EecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccCcCCCC
Q 018293          288 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKK  353 (358)
Q Consensus       288 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  353 (358)
                      -|+.++.  .........-.|..+......+| ++ +-...+|.+=|+.+.....-.+....+..+
T Consensus       149 kdlsn~t--rt~l~s~~g~aidelkilgkdry-li-~~ts~siii~d~es~rfsei~wqgsgg~ek  210 (1636)
T KOG3616|consen  149 KDLSNDT--RTNLISHKGLAIDELKILGKDRY-LI-AHTSESIIIADLESNRFSEIAWQGSGGHEK  210 (1636)
T ss_pred             ecccCCc--eEeeeecCCcchhhhhhccccce-EE-eeccccEEEeecccchhhhhhcccCCCcce

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=86.67  E-value=9.4  Score=27.17  Aligned_cols=118  Identities=11%  Similarity=0.124  Sum_probs=68.2

Q ss_pred             EEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecC----CCCcEEEEEeCCCcEEEEe
Q 018293          214 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP----LVPNLLATGSTDKMVKLWD  289 (358)
Q Consensus       214 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~----~~~~~l~~~~~dg~i~i~d  289 (358)
                      -.|....+ .|++++..|+|.+++.......... ....+..+ .-...|++++-.+    ++...|+.|+. ..+..||
T Consensus         4 GkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYD   79 (136)
T PF14781_consen    4 GKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR-QDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD   79 (136)
T ss_pred             EEeCCCce-eEEEEecCCEEEEECCCcccccccc-ccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence            34555333 7888889999999988765322211 11222333 3456677776554    23357777764 5688999


Q ss_pred             cCCCCceeeEecCCCCceeEEEEEc---C-CCCeEEEEEccCCeEEEEEccCCCc
Q 018293          290 LSNNQPSCIASRNPKAGAVFSVAFS---E-DSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~v~~~~~~---~-~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      +..+.-......   ...|+++.+-   . +.+ +++ .+.+-.|.=||....+.
T Consensus        80 V~~N~d~Fyke~---~DGvn~i~~g~~~~~~~~-l~i-vGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   80 VENNSDLFYKEV---PDGVNAIVIGKLGDIPSP-LVI-VGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             cccCchhhhhhC---ccceeEEEEEecCCCCCc-EEE-ECceEEEEEeCCCCcEE
Confidence            998874333333   2456666663   2 233 444 44456777777655443

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=86.61  E-value=22  Score=31.42  Aligned_cols=31  Identities=23%  Similarity=0.375  Sum_probs=23.7

Q ss_pred             ceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          306 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       306 ~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ..|.+++..+..+ ++++...+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~-~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRR-LLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTT-EEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcC-EEEEEeCCCcEEEEEEeC
Confidence            3488899988887 688899999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.36  E-value=11  Score=36.10  Aligned_cols=37  Identities=14%  Similarity=0.141  Sum_probs=28.2

Q ss_pred             CCcccceeeecCCccccCCCce----EEecCCCCeEEEEEcc
Q 018293           46 PAFPLCMAWLDCPLKDREKGNF----MAVGSMEPAIEIWDLD   83 (358)
Q Consensus        46 ~~~~~~~~~~~~~~~~s~~~~~----l~~g~~dg~i~vw~~~   83 (358)
                      ...++.+.|++.+ .-+.+|..    +|+|..+|.|++|.-.
T Consensus        78 ~e~ITa~~clpl~-n~s~dgr~dwtcVavGt~sGyV~FYTe~  118 (1244)
T KOG2727|consen   78 AESITAIECLPLD-NVSHDGRVDWTCVAVGTSSGYVLFYTET  118 (1244)
T ss_pred             cceeeeeeeeecc-ccccccccceeEEEEecccceEEEEecc
Confidence            3445677888876 44667766    9999999999999865

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=84.60  E-value=40  Score=32.61  Aligned_cols=169  Identities=14%  Similarity=0.094  Sum_probs=96.7

Q ss_pred             ccccceeeEEEc---C--CCCcEEEEEeCCCcEEEEEcccCCC------c---------cc---eeeecCCeeeEEEcCC
Q 018293          163 HHTDKVQAVAWN---H--HSPQILLSGSFDRSVVMKDARISTH------S---------GF---KWAVAADVESLAWDPH  219 (358)
Q Consensus       163 ~~~~~v~~~~~~---~--~~~~~l~~~~~dg~i~i~d~~~~~~------~---------~~---~~~~~~~i~~~~~~~~  219 (358)
                      ....+|..++|.   .  +.....+..-....+.|+...-.+.      .         ..   ......+...++|+|.
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~  156 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW  156 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence            356788888887   2  1111244444556667766221111      0         00   0012346788999999


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCc----cEEE---eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQS----SFTL---HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  292 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~  292 (358)
                      ....||+-...|...|||+.......... ...    ...+   .........+.|.++. +.|+.++ ...+.++|+.+
T Consensus       157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~-~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~-~~lLv~~-r~~l~~~d~~~  233 (765)
T PF10214_consen  157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSN-LRLSRNISGSIIFDPEELSNWKRILWVSDS-NRLLVCN-RSKLMLIDFES  233 (765)
T ss_pred             ccceEEEEeccCcEEEEEeccccccCCcc-eeeccCCCccccCCCcccCcceeeEecCCC-CEEEEEc-CCceEEEECCC
Confidence            88899999999999999992221111000 000    0111   0011334578898876 5566555 45689999998


Q ss_pred             CCceeeEecCCCCceeEEEEEcCC--CCeEEEEEccCCeEEEEEccC
Q 018293          293 NQPSCIASRNPKAGAVFSVAFSED--SPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       293 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ...............|..+.-+|.  +. +++.-  ...|...++..
T Consensus       234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~-~FiLT--s~eiiw~~~~~  277 (765)
T PF10214_consen  234 NWQTEYLVTAKTWSWILDVKRSPDNPSH-VFILT--SKEIIWLDVKS  277 (765)
T ss_pred             CCccchhccCCChhheeeEEecCCccce-EEEEe--cCeEEEEEccC
Confidence            764332222334567888888887  33 33332  25687888876

These proteins are found in fungi.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=84.51  E-value=21  Score=29.34  Aligned_cols=229  Identities=16%  Similarity=0.088  Sum_probs=117.9

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      .-.|++..++..|.-+.+.|+.+.....                        +...+......-..++.|   +++-..+
T Consensus       135 ~vsGn~aYVadlddgfLivdvsdpssP~------------------------lagrya~~~~d~~~v~IS---Gn~AYvA  187 (370)
T COG5276         135 YVSGNYAYVADLDDGFLIVDVSDPSSPQ------------------------LAGRYALPGGDTHDVAIS---GNYAYVA  187 (370)
T ss_pred             EecCCEEEEeeccCcEEEEECCCCCCce------------------------eeeeeccCCCCceeEEEe---cCeEEEE
Confidence            4578888888856556688887533221                        111122222333556666   4467778


Q ss_pred             EcCCeEEEEECCCCceeeeec--ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee-ecCCeee---EE
Q 018293          142 SADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-VAADVES---LA  215 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~---~~  215 (358)
                      ..|+-+.+-|+........+.  .....+.++..+++. .  ...-.+--+.+-|....+.....-. ....+.+   +.
T Consensus       188 ~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr-~--y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~  264 (370)
T COG5276         188 WRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR-A--YLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVP  264 (370)
T ss_pred             EeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCe-e--EEEEcccceEEEecCCCCCceEeeccccCCccccccee
Confidence            889999999997653222121  122357777777654 3  3333345567777776664442221 1122222   23


Q ss_pred             EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      .   .+.+......+.-+.+-|+.+....      .....+......-..+..+.   +++..+..+ ...+-+....+ 
T Consensus       265 V---s~~~~Yvadga~gl~~idisnp~sp------fl~ss~~t~g~~a~gi~ay~---~y~yiadkn-~g~vV~~s~~s-  330 (370)
T COG5276         265 V---SGEYAYVADGAKGLPIIDISNPPSP------FLSSSLDTAGYQAAGIRAYG---NYNYIADKN-TGAVVDASPPS-  330 (370)
T ss_pred             c---ccceeeeeccccCceeEeccCCCCC------chhccccCCCccccceEEec---CeeEeccCC-ceEEEeCCChh-
Confidence            3   2346666666666777787765221      11111211122334444442   444444433 44455554433 


Q ss_pred             eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          296 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       296 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                       ..-...+....+.+...+-+.+ ++.+...++.+.+|+..
T Consensus       331 -~m~~~~g~~ti~~s~~v~~~~q-~~y~~d~~~gl~i~~~~  369 (370)
T COG5276         331 -MMDKRPGRPTIGQSCDVSVDTQ-IIYSTDYNGGLSIIEYL  369 (370)
T ss_pred             -hcccccCcceEeeecceEEEee-EEEEeecCCCEEEEEec
Confidence             1222222223344444444555 46677888889998853

>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]

Probab=84.32  E-value=11  Score=36.04  Aligned_cols=154  Identities=10%  Similarity=0.099  Sum_probs=81.6

Q ss_pred             EeCCCcEEEEEcccCCCccceeeecCCeeeEEE-cCCC-------CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEE
Q 018293          184 GSFDRSVVMKDARISTHSGFKWAVAADVESLAW-DPHA-------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT  255 (358)
Q Consensus       184 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~-~~~~-------~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  255 (358)
                      -+.|+.+.+|+................|..+.. -|..       .++++++ ....+.++-+.......+......-..
T Consensus        98 iT~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vA-T~~e~~ilgvs~d~~T~Els~fnTgl~  176 (1263)
T COG5308          98 ITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVA-TEKEVMILGVSKDTKTGELSLFNTGLV  176 (1263)
T ss_pred             EEcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhh-hhheeeEEEEEeccccceeEEEecceE
Confidence            345889999999876554433333444444432 2211       1122222 123344443332211000000000011


Q ss_pred             EeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC----------------------ceeeEecCCCCceeEEEEE
Q 018293          256 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ----------------------PSCIASRNPKAGAVFSVAF  313 (358)
Q Consensus       256 ~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------------------~~~~~~~~~~~~~v~~~~~  313 (358)
                      .....-.|.|+.-+.+| +.+++|-.|  +.+|.+.-..                      ......+..|...|..++.
T Consensus       177 vsvqGinV~civs~e~G-rIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~v  253 (1263)
T COG5308         177 VSVQGINVRCIVSEEDG-RIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAV  253 (1263)
T ss_pred             EeccCceeEEEEeccCC-cEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheee
Confidence            22233568888888877 888888777  6677653210                      0011223345667888888


Q ss_pred             cCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          314 SEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       314 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      ..... ++.+-.....|+-|.+.......
T Consensus       254 DqsRg-~ly~Lr~kS~Vray~itkngl~g  281 (1263)
T COG5308         254 DQSRG-LLYVLRKKSAVRAYSITKNGLVG  281 (1263)
T ss_pred             ccccc-ceeeecccceeeeEeeecccccc
Confidence            77666 68888888899999887655443

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=84.30  E-value=11  Score=32.89  Aligned_cols=104  Identities=13%  Similarity=0.023  Sum_probs=61.6

Q ss_pred             CCcEEEEEEcCCeEEEE-ECCCC-c----eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee
Q 018293          134 FRNILASASADKQVKIW-DVAAG-K----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV  207 (358)
Q Consensus       134 ~~~~l~s~~~dg~v~iw-d~~~~-~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  207 (358)
                      |+.-+..+..||.|.-| |++.+ .    .++.++-...++..+.-.... +-+++-+..|++..+.....+... ....
T Consensus       279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~~~~lL-~~~~  356 (733)
T COG4590         279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTSEKLLL-FERA  356 (733)
T ss_pred             CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccccc-ceEEEEcCCCceeeeecccCccee-hhhh
Confidence            35667788889988877 44332 1    122222222333333222222 557778888998888766555443 2223


Q ss_pred             cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293          208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  241 (358)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~  241 (358)
                      -..+.-++++|++. ++++- ..|.++++.+.+.
T Consensus       357 ~~~~~~~~~Sp~~~-~Ll~e-~~gki~~~~l~Nr  388 (733)
T COG4590         357 YQAPQLVAMSPNQA-YLLSE-DQGKIRLAQLENR  388 (733)
T ss_pred             hcCcceeeeCcccc-hheee-cCCceEEEEecCC
Confidence            34677789999654 44443 5678999988776

>smart00564 PQQ beta-propeller repeat

Probab=83.85  E-value=3.3  Score=20.77  Aligned_cols=25  Identities=20%  Similarity=0.183  Sum_probs=20.9

Q ss_pred             EEEEEEcCCeEEEEECCCCceeeee
Q 018293          137 ILASASADKQVKIWDVAAGKCNLTL  161 (358)
Q Consensus       137 ~l~s~~~dg~v~iwd~~~~~~~~~~  161 (358)
                      .++.++.+|.+..+|.++|+.+..+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            6778889999999999999876543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=83.72  E-value=28  Score=30.11  Aligned_cols=101  Identities=13%  Similarity=0.109  Sum_probs=58.2

Q ss_pred             EEEEEEcCCeEEEEECCCCceeeeecccc--cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecC-Ceee
Q 018293          137 ILASASADKQVKIWDVAAGKCNLTLEHHT--DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA-DVES  213 (358)
Q Consensus       137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~  213 (358)
                      .++.+..+|.+.-.|.++++.+.......  ..+..-.+..+|  .++.++.++.+..+|.++++..-....... .+..
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G--~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~  147 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG--KIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS  147 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC--eEEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence            56667888989999998888665433221  223332333355  478888899888888876665432222220 1111


Q ss_pred             EEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293          214 LAWDPHAEHSFVVSLEDGTIKGFDIRTA  241 (358)
Q Consensus       214 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~  241 (358)
                      -..-  ....+..++.+|.+...|..++
T Consensus       148 ~~v~--~~~~v~~~s~~g~~~al~~~tG  173 (370)
T COG1520         148 PPVV--GDGTVYVGTDDGHLYALNADTG  173 (370)
T ss_pred             CcEE--cCcEEEEecCCCeEEEEEccCC
Confidence            1111  1224455556788888887776

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=82.80  E-value=31  Score=29.86  Aligned_cols=197  Identities=13%  Similarity=0.114  Sum_probs=103.6

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCccc---EEEEecCCCCCcE-
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS---VLGLAWNKEFRNI-  137 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~-  137 (358)
                      +|...+++....++-+.+||++.... +...                          .+.-+.   ...+.+.  +... 
T Consensus        65 dp~kSlIigTdK~~GL~VYdL~Gk~l-q~~~--------------------------~Gr~NNVDvrygf~l~--g~~vD  115 (381)
T PF02333_consen   65 DPAKSLIIGTDKKGGLYVYDLDGKEL-QSLP--------------------------VGRPNNVDVRYGFPLN--GKTVD  115 (381)
T ss_dssp             -GGG-EEEEEETTTEEEEEETTS-EE-EEE---------------------------SS-EEEEEEEEEEEET--TEEEE
T ss_pred             CcccceEEEEeCCCCEEEEcCCCcEE-Eeec--------------------------CCCcceeeeecceecC--CceEE
Confidence            45667788888889999999974221 1100                          011111   2222332  2222 


Q ss_pred             EEEEE-cC---CeEEEEECC--CCceeeeecc-------cccceeeEEE--cC-CCCcEEEEEeCCCcEEEEEcccCCC-
Q 018293          138 LASAS-AD---KQVKIWDVA--AGKCNLTLEH-------HTDKVQAVAW--NH-HSPQILLSGSFDRSVVMKDARISTH-  200 (358)
Q Consensus       138 l~s~~-~d---g~v~iwd~~--~~~~~~~~~~-------~~~~v~~~~~--~~-~~~~~l~~~~~dg~i~i~d~~~~~~-  200 (358)
                      |+.++ .+   .+|++|.+.  ++. +..+..       ....+..+|+  ++ ++..+++....+|.+.-|.+..... 
T Consensus       116 lavas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g  194 (381)
T PF02333_consen  116 LAVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG  194 (381)
T ss_dssp             EEEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS
T ss_pred             EEEEecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC
Confidence            33443 32   469999775  333 333221       1134566666  33 3545777788999999888864321 


Q ss_pred             -----ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee--cCCceeEEEecC--C
Q 018293          201 -----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNP--L  271 (358)
Q Consensus       201 -----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~--~  271 (358)
                           ....+...+.+..|..+.. ...++.+-++--|.-|+.+......    ...+....+  ....+-.|++..  +
T Consensus       195 ~v~~~lVR~f~~~sQ~EGCVVDDe-~g~LYvgEE~~GIW~y~Aep~~~~~----~~~v~~~~g~~l~aDvEGlaly~~~~  269 (381)
T PF02333_consen  195 KVSATLVREFKVGSQPEGCVVDDE-TGRLYVGEEDVGIWRYDAEPEGGND----RTLVASADGDGLVADVEGLALYYGSD  269 (381)
T ss_dssp             SEEEEEEEEEE-SS-EEEEEEETT-TTEEEEEETTTEEEEEESSCCC-S------EEEEEBSSSSB-S-EEEEEEEE-CC
T ss_pred             cEeeEEEEEecCCCcceEEEEecc-cCCEEEecCccEEEEEecCCCCCCc----ceeeecccccccccCccceEEEecCC
Confidence                 1123445677888888874 4588889888878777776432110    111212211  245677777753  4


Q ss_pred             CCcEEEEEe-CCCcEEEEecCCC
Q 018293          272 VPNLLATGS-TDKMVKLWDLSNN  293 (358)
Q Consensus       272 ~~~~l~~~~-~dg~i~i~d~~~~  293 (358)
                      +..||++.+ .+++..||+.+..
T Consensus       270 g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  270 GKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             C-EEEEEEEGGGTEEEEEESSTT
T ss_pred             CCeEEEEEcCCCCeEEEEecCCC
Confidence            444555554 4778999998764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=81.91  E-value=37  Score=30.25  Aligned_cols=53  Identities=15%  Similarity=0.186  Sum_probs=34.9

Q ss_pred             cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc-----e-e-eecCCeeeEEEcCC
Q 018293          166 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-----K-W-AVAADVESLAWDPH  219 (358)
Q Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~-~-~~~~~i~~~~~~~~  219 (358)
                      ...+.|+|.|++ ++|++--..|.|++++.........     . . ........++++|+
T Consensus        30 ~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd   89 (454)
T TIGR03606        30 NKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD   89 (454)
T ss_pred             CCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence            456889999998 6665554469999997654322110     1 1 12566889999985

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=81.25  E-value=40  Score=32.01  Aligned_cols=97  Identities=11%  Similarity=0.187  Sum_probs=52.9

Q ss_pred             eeEEEcCCCCcEEEEEeCCC-----cEEEEEcccCCCcc--ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293          169 QAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHSG--FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  241 (358)
Q Consensus       169 ~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~  241 (358)
                      ..+.|-|+| ..+++-..||     .|.++..+.-+.-.  ...+....+...+|+-..  .+.+....+.+++|-..+-
T Consensus       250 ~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s--~vlav~~~n~~~lwttkNy  326 (1243)
T COG5290         250 HQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLS--TVLAVAEGNLLKLWTTKNY  326 (1243)
T ss_pred             hccccccCC-ceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHH--HHHHHhhcceEEEEEccce
Confidence            347899999 7777766554     36666544332221  123344556677776532  2223335677899987664


Q ss_pred             CCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEE
Q 018293          242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA  277 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~  277 (358)
                      .         --......-..+.-+.|+|...+.++
T Consensus       327 h---------WYLK~e~~ip~~s~vkwhpe~~nTl~  353 (1243)
T COG5290         327 H---------WYLKVERQIPGISYVKWHPEEKNTLL  353 (1243)
T ss_pred             E---------EEEEEeecCCCcceeeeccccCcEEE
Confidence            1         11122222344666778875544443

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=81.20  E-value=48  Score=31.03  Aligned_cols=237  Identities=15%  Similarity=0.150  Sum_probs=0.0

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEec-CCCCeEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG-SMEPAIEIW   80 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~vw   80 (358)
                      .++|+-+.+-.|-+.   +.+.-|+.+...    .+.-.+..+....+.|+.-...    +...++.++| ...+.-++-
T Consensus        34 ~~s~~sn~IdiGIS~---S~ISsYIi~PTP----KLiwsypi~pt~iV~~~dV~~~----~~~~~~~~~glt~rKk~~ll  102 (670)
T PF10395_consen   34 DFSPDSNQIDIGISG---SAISSYIIKPTP----KLIWSYPISPTTIVECCDVLEK----SDGKKLYCVGLTERKKFKLL  102 (670)
T ss_pred             ccCCCCceEEEEecc---chhhheecCCCc----ceeEeeccCcCceEEEEEeEec----CCCcEEEEEEEeeCCeeEEE


Q ss_pred             Ecccc----------cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEE
Q 018293           81 DLDVI----------DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  150 (358)
Q Consensus        81 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  150 (358)
                      .+...          ..........                         -.+.|-.+.|.++ +..+++...+|.|.+|
T Consensus       103 ~i~~~~~~~~~~~~~~e~~~~~~~k-------------------------l~~kvv~Ik~~~~-~~~I~vvl~nG~i~~~  156 (670)
T PF10395_consen  103 LIERKVGSTEDGTVNSETTNEFELK-------------------------LDDKVVGIKFSSD-GKIIYVVLENGSIQIY  156 (670)
T ss_pred             EEEccCccccccccCccccceEEEE-------------------------cccceEEEEEecC-CCEEEEEEcCCcEEEE


Q ss_pred             EC---------CCCceeeeecccccceeeEEEcCCCCcEEEEEe---CCCcEEEEEc--ccCCCccce--eeecCCeeeE
Q 018293          151 DV---------AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS---FDRSVVMKDA--RISTHSGFK--WAVAADVESL  214 (358)
Q Consensus       151 d~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~--~~~~~~~~~--~~~~~~i~~~  214 (358)
                      |.         .....-..--.+..-|.....-.....+++.+.   ..-..+++.+  .........  ..........
T Consensus       157 d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s  236 (670)
T PF10395_consen  157 DFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDS  236 (670)
T ss_pred             eccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccc


Q ss_pred             EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-------CCceeEEEecCCCCcEEEEEeCCCcEEE
Q 018293          215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-------DKAVCTISYNPLVPNLLATGSTDKMVKL  287 (358)
Q Consensus       215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~~l~~~~~dg~i~i  287 (358)
                      .|+-..+.+..-  .++.|.+|++..-         +....+.-.       ...|.-...+|+.    +.-+.+..|++
T Consensus       237 ~f~Y~~G~LY~l--~~~~i~~ysip~f---------~~~~tI~l~~ii~~~~~~~vSl~~~s~nR----vLLs~~nkIyL  301 (670)
T PF10395_consen  237 KFCYQFGKLYQL--SKKTISSYSIPNF---------QIQKTISLPSIIDKESDDLVSLKPPSPNR----VLLSVNNKIYL  301 (670)
T ss_pred             eEEEeCCEEEEE--eCCEEEEEEcCCc---------eEEEEEEechhhccccccceEeecCCCCe----EEEEcCCEEEE


Q ss_pred             Eec
Q 018293          288 WDL  290 (358)
Q Consensus       288 ~d~  290 (358)
                      .|+
T Consensus       302 ld~  304 (670)
T PF10395_consen  302 LDL  304 (670)
T ss_pred             Eee

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	358
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-12
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-12
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		3e-12
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-12
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		3e-12
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-11
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-09
2h9l_A	329	Wdr5delta23 Length = 329		2e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-09
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		7e-09
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-04
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		7e-08
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		8e-08
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-07
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-07
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-07
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		2e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		3e-07
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		2e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		7e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-04
3ewe_A	349	Crystal Structure Of The Nup85SEH1 COMPLEX Length =		7e-06
3f3f_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		7e-06
3f3p_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		8e-06
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		1e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		3e-05
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		3e-05
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		3e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		4e-05
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		5e-05
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		6e-05
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		9e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-04
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-04
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		2e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-04
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		7e-04

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 136 NILASASADKQVKIWDVA--------AGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGS 185
           +I+A+ +    V ++D          +G+CN  L L  H  +   ++WN +    LLS S
Sbjct: 140 HIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSAS 199
Query: 186 FDRSVVM-------KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 238
            D +V +       K+ +I          +A VE +AW    E  F    +D  +  +D 
Sbjct: 200 DDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDT 259
Query: 239 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 298
           R+      +T+ + S  + AH   V  +S+NP    +LATGS DK V LWDL N +    
Sbjct: 260 RS------NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 340
              + K   +F V +S  +  +LA  G+  +L +WD LS  G
Sbjct: 314 TFESHK-DEIFQVHWSPHNETILASSGTDRRLNVWD-LSKIG 353

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 136 NILASASADKQVKIWDVA--------AGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGS 185
           +I+A+ +    V ++D          +G+CN  L L  H  +   ++WN +    LLS S
Sbjct: 140 HIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSAS 199
Query: 186 FDRSVVM-------KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 238
            D +V +       K+ +I          +A VE +AW    E  F    +D  +  +D 
Sbjct: 200 DDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDT 259
Query: 239 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 298
           R+      +T+ + S  + AH   V  +S+NP    +LATGS DK V LWDL N +    
Sbjct: 260 RS------NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 340
              + K   +F V +S  +  +LA  G+  +L +WD LS  G
Sbjct: 314 TFESHK-DEIFQVHWSPHNETILASSGTDRRLNVWD-LSKIG 353

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 154 AGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-------KDARISTHSGFK 204
           +G+C  +L L  H  +   ++WN +    LLS S D ++ +       K+ R+       
Sbjct: 168 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 227
Query: 205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 264
               A VE +AW    E  F    +D  +  +D R      ++ + + S T+ AH   V 
Sbjct: 228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR------NNNTSKPSHTVDAHTAEVN 281
Query: 265 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 324
            +S+NP    +LATGS DK V LWDL N +   + S       +F V +S  +  +LA  
Sbjct: 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASS 340
Query: 325 GSKGKLEIWDTLSDAG 340
           G+  +L +WD LS  G
Sbjct: 341 GTDRRLHVWD-LSKIG 355

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 154 AGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-------KDARISTHSGFK 204
           +G+C  +L L  H  +   ++WN +    LLS S D ++ +       K+ R+       
Sbjct: 170 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 229
Query: 205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 264
               A VE +AW    E  F    +D  +  +D R      ++ + + S T+ AH   V 
Sbjct: 230 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR------NNNTSKPSHTVDAHTAEVN 283
Query: 265 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 324
            +S+NP    +LATGS DK V LWDL N +   + S       +F V +S  +  +LA  
Sbjct: 284 CLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASS 342
Query: 325 GSKGKLEIWDTLSDAG 340
           G+  +L +WD LS  G
Sbjct: 343 GTDRRLHVWD-LSKIG 357

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 154 AGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-------KDARISTHSGFK 204
           +G+C  +L L  H  +   ++WN +    LLS S D ++ +       K+ R+       
Sbjct: 172 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 231
Query: 205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 264
               A VE +AW    E  F    +D  +  +D R      ++ + + S T+ AH   V 
Sbjct: 232 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR------NNNTSKPSHTVDAHTAEVN 285
Query: 265 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 324
            +S+NP    +LATGS DK V LWDL N +   + S       +F V +S  +  +LA  
Sbjct: 286 CLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASS 344
Query: 325 GSKGKLEIWD 334
           G+  +L +WD
Sbjct: 345 GTDRRLHVWD 354

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 24/215 (11%)
Query: 137 ILASASADKQVKIWDVA--------AGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGS- 185
           I+A+ +    V ++D          +G+CN  L L  H  +   ++WN +    LLS S 
Sbjct: 139 IIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASD 198
Query: 186 ------FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 239
                 +D S V K+ ++           A VE ++W    E  F    +D  +  +D R
Sbjct: 199 DHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTR 258
Query: 240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 299
           +      + + + S ++ AH   V  +S+NP    +LATGS DK V LWDL N +   + 
Sbjct: 259 S------NNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-LH 311
Query: 300 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
           S       +F V +S  +  +LA  G+  +L +WD
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 102/217 (47%), Gaps = 23/217 (10%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           HT SVL L +++    ++ + S+D  V++WDV  G+   TL HH + V  + +N+    +
Sbjct: 172 HTGSVLCLQYDER---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GM 225
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
           +++ S DRS+ + D    T    +  +     ++      +   V +  D TIK ++  T
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST 285
Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
                     +   TL+ H + +  + Y      L+ +GS+D  ++LWD+     +C+  
Sbjct: 286 C---------EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG--ACLRV 331
Query: 301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337
                  V  + F  D+  +++ G   GK+++WD ++
Sbjct: 332 LEGHEELVRCIRF--DNKRIVS-GAYDGKIKVWDLVA 365

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 70  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 127
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 128 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 182
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 183 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 235
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
                N+  CI +     G  + V+ SED+
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 63  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 120
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 121 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 175
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 176 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 228
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
                N+  CI +     G  + V+ SED+
Sbjct: 229 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 258

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 60  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 117
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 118 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 172
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 173 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 225
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
                N+  CI +     G  + V+ SED+
Sbjct: 226 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 255

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 64  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 121
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 122 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 176
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 177 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 229
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
                N+  CI +     G  + V+ SED+
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 81  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 138
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 139 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 193
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 194 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 246
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
                N+  CI +     G  + V+ SED+
Sbjct: 247 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 276

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 67  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 125 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
                N+  CI +     G  + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 70  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 127
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 128 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 182
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 183 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 235
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
                N+  CI +     G  + V+ SED+
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 67  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 125 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
                N+  CI +     G  + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 67  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 125 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
                N+  CI +     G  + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 64  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 121
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 122 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 176
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 177 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 229
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
                N+  CI +     G  + V+ SED+
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 69  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 126
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 127 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 181
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 182 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 234
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
                N+  CI +     G  + V+ SED+
Sbjct: 235 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 264

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 65  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 122
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 123 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 177
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 178 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 230
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
                N+  CI +     G  + V+ SED+
Sbjct: 231 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 260

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 70  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 127
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 128 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 182
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 183 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 235
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
                N+  CI +     G  + V+ SED+
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 88  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 145
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 146 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 200
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 201 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 253
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
                N+  CI +     G  + V+ SED+
Sbjct: 254 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 283

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 86  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 143
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 144 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 198
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 199 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 251
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
                N+  CI +     G  + V+ SED+
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 67  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 125 IVSGSFDESVRIWDVK--TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
                N+  CI +     G  + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 67  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 239
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 125 IVSGSFDESVRIWDVK--TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 240 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 291
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNDLKLWDYSKGKCLKT 232
Query: 292 ----NNQPSCIASRNPKAGAVFSVAFSEDS 317
                N+  CI +     G  + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 103/256 (40%), Gaps = 57/256 (22%)
Query: 127 GLAWNKEFR-NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS 185
           G  W+ + R NI+ S S D+ +K+W+   G+C  TL  HT  V+ +   H   + ++SGS
Sbjct: 160 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM---HLHEKRVVSGS 216
Query: 186 FDRSVVMKD----------------ARISTHSGFKWAVAA-DVESLAWDPHAE---HSF- 224
            D ++ + D                 R   + G +    A D     WDP  E   H+  
Sbjct: 217 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 276
Query: 225 -----VVSLE-----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 268
                V SL+           D +I+ +D+ T       T  QS              S 
Sbjct: 277 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS------------LTSG 324
Query: 269 NPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 327
             L  N+L +G+ D  VK+WD+   Q    +   N    AV  + F+++  FV+      
Sbjct: 325 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVIT-SSDD 381
Query: 328 GKLEIWDTLSDAGISN 343
           G +++WD  +   I N
Sbjct: 382 GTVKLWDLKTGEFIRN 397

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 119/290 (41%), Gaps = 60/290 (20%)
Query: 65  GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDS 124
           G F+A G+ +  I IWD   I+  +  +IL G                        H   
Sbjct: 135 GKFLATGAEDRLIRIWD---IENRKIVMILQG------------------------HEQD 167
Query: 125 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 184
           +  L +     + L S S D+ V+IWD+  G+C+LTL    D V  VA +    + + +G
Sbjct: 168 IYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAG 225
Query: 185 SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF-VVSLEDG----------TI 233
           S DR+V + D    + +GF      D E+ +   H +  + VV   DG          ++
Sbjct: 226 SLDRAVRVWD----SETGF-LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280
Query: 234 KGFDIRTAKSDPDSTSQQSS---FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 290
           K ++++ A +  DS +  S     T   H   V +++       +L +GS D+ V  WD 
Sbjct: 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-SGSKDRGVLFWDK 339
Query: 291 SNNQPSCI--ASRNPKAGAVFSVAFSEDSPF-----VLAIGGSKGKLEIW 333
            +  P  +    RN    +V SVA +  S       V A G    K  IW
Sbjct: 340 KSGNPLLMLQGHRN----SVISVAVANGSSLGPEYNVFATGSGDCKARIW 385

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 61/250 (24%)
Query: 65  GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDS 124
           GN +A  S + ++ +W++D  DE +   +L                          HT  
Sbjct: 117 GNLLATCSRDKSVWVWEVDEEDEYECVSVLNS------------------------HTQD 152
Query: 125 VLGLAWNKEFRNILASASADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHHSPQILL 182
           V  + W+   + +LASAS D  VK++        C  TLE H   V ++A++  S Q L 
Sbjct: 153 VKHVVWHPS-QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLA 210
Query: 183 SGSFDRSVVMKDAR-------------------ISTHSGFKWAVAADVESLAWDPHAEHS 223
           S S DR+V +                       I T SGF    +  +  +AW      +
Sbjct: 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH---SRTIYDIAW-CQLTGA 266
Query: 224 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-----HAHDKAVCTISYNPLVPNLLAT 278
              +  D  I+ F     + DP+S  QQ +F+L      AH + V  +++NP  P LLA+
Sbjct: 267 LATACGDDAIRVF-----QEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321
Query: 279 GSTDKMVKLW 288
            S D  V  W
Sbjct: 322 CSDDGEVAFW 331

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 23/195 (11%)
Query: 128 LAWNKEFRNILASASADKQVKIWDVAAGK--CNLTL-EHHTDKVQAVAWNHHSPQILLSG 184
           LAWN     +LAS   D++++IW        C   L E H   V+ VAW+      L S 
Sbjct: 22  LAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASA 79
Query: 185 SFDRSVVMKDAR------ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 238
           SFD +  +          ++T  G +     +V+S+AW P   +       D ++  +++
Sbjct: 80  SFDATTCIWKKNQDDFECVTTLEGHE----NEVKSVAWAPSG-NLLATCSRDKSVWVWEV 134
Query: 239 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 298
                  +    +    L++H + V  + ++P    LLA+ S D  VKL+    +   C 
Sbjct: 135 ------DEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCC 187
Query: 299 ASRNPKAGAVFSVAF 313
           A+       V+S+AF
Sbjct: 188 ATLEGHESTVWSLAF 202

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 103/255 (40%), Gaps = 65/255 (25%)
Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195
           +++ SAS D  +K+WD   G    TL+ HTD VQ ++++H S ++L S S D ++ + D 
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDF 179
Query: 196 R----ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA---------- 241
           +    I T  G       +V S++  P+ +H  V +  D TIK ++++T           
Sbjct: 180 QGFECIRTMHGHD----HNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHR 234
Query: 242 ------KSDPDST-----------------SQQSSFTLHAHDKAVCTISYNPLVPN---- 274
                 + + D T                 +++    L  H   V  IS+ P        
Sbjct: 235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294
Query: 275 ---------------LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF 319
                           L +GS DK +K+WD+S     C+ +       V  V F     F
Sbjct: 295 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGKF 352
Query: 320 VLAIGGSKGKLEIWD 334
           +L+    K  L +WD
Sbjct: 353 ILSCADDK-TLRVWD 366

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 25/214 (11%)
Query: 128 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 187
           +AW KE  N LA  ++  +V++WDV   K    +  H+ +V +++WN +   IL SGS  
Sbjct: 73  VAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRS 128
Query: 188 RSVVMKDARISTH-----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 242
             +   D R++ H     SG     + +V  L W P   H     L  G      +    
Sbjct: 129 GHIHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRH-----LASGGNDNL-VNVWP 178
Query: 243 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT--GSTDKMVKLWDLSNNQPSCIAS 300
           S P         T   H  AV  +++ P   N+LAT  G++D+ +++W++ +   +C+++
Sbjct: 179 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSA 236
Query: 301 RNPKAGAVFSVAFS-EDSPFVLAIGGSKGKLEIW 333
            +  +  V S+ +S      +   G ++ +L IW
Sbjct: 237 VDAHS-QVCSILWSPHYKELISGHGFAQNQLVIW 269

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 23/180 (12%)
Query: 128 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 187
           +AW KE  N LA  ++  +V++WDV   K    +  H+ +V +++WN +   IL SGS  
Sbjct: 164 VAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRS 219
Query: 188 RSVVMKDARISTH-----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 242
             +   D R++ H     SG     + +V  L W P   H     L  G      +    
Sbjct: 220 GHIHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRH-----LASGGNDNL-VNVWP 269
Query: 243 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT--GSTDKMVKLWDLSNNQPSCIAS 300
           S P         T   H  AV  +++ P   N+LAT  G++D+ +++W++ +   +C+++
Sbjct: 270 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSA 327

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 25/214 (11%)
Query: 128 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 187
           +AW KE  N LA  ++  +V++WDV   K    +  H+ +V +++WN +   IL SGS  
Sbjct: 153 VAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRS 208
Query: 188 RSVVMKDARISTH-----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 242
             +   D R++ H     SG     + +V  L W P   H     L  G      +    
Sbjct: 209 GHIHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRH-----LASGGNDNL-VNVWP 258
Query: 243 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT--GSTDKMVKLWDLSNNQPSCIAS 300
           S P         T   H  AV  +++ P   N+LAT  G++D+ +++W++ +   +C+++
Sbjct: 259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSA 316
Query: 301 RNPKAGAVFSVAFSED-SPFVLAIGGSKGKLEIW 333
            +  +  V S+ +S      +   G ++ +L IW
Sbjct: 317 VDAHS-QVCSILWSPHYKELISGHGFAQNQLVIW 349

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 25/224 (11%)
Query: 130 WNKEF-RNILASASADKQVKIWDVAAGKCNLTL------EHHTDKVQAVAWNHHSPQILL 182
           W+ +F + ILA+ S D+++K+  V+    + TL        H   +++VAW  H+  +L 
Sbjct: 18  WSFDFSQGILATGSTDRKIKL--VSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLA 74
Query: 183 SGSFDRSVVMKDARISTHSGFKWAVAA-------DVESLAWDPHAEHSFVVSLEDGTIKG 235
           +GSFD +V +     S    F+  + A       +V+ +AW     +    S +      
Sbjct: 75  AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS---- 130
Query: 236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 295
             +   ++D      +    L  H + V  + ++P    LLA+ S D  V++W   ++  
Sbjct: 131 --VWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDW 187
Query: 296 SCIASRNPKAGAVFSVAFSE-DSPFVLAIGGSKGKLEIWDTLSD 338
            C+A  N   G V+S  F + +  F L  G     + +W  + D
Sbjct: 188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 43/252 (17%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-------TLEHHTDKVQAVAW 173
           HT  VL +AW     N++AS S D  V +W++  G   L       TLE HT +V  VAW
Sbjct: 80  HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 174 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV------- 226
           +  +  +LLS   D  +++ D              A V +L  D H +  + V       
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDV----------GTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 227 ----SLEDGTIKGFDIR----TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 278
               S  D  ++  + R     A+ D      +    +   +  + T  ++ +       
Sbjct: 190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM------- 242
Query: 279 GSTDKMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337
             +++ V LWD  +  +P  +   +  +G +    F  D+  V   G     +  ++  S
Sbjct: 243 --SERQVALWDTKHLEEPLSLQELDTSSGVLLPF-FDPDTNIVYLCGKGDSSIRYFEITS 299
Query: 338 DAGISNRFSKYS 349
           +A   +  S +S
Sbjct: 300 EAPFLHYLSMFS 311

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 43/252 (17%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-------TLEHHTDKVQAVAW 173
           HT  VL +AW     N++AS S D  V +W++  G   L       TLE HT +V  VAW
Sbjct: 80  HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 174 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV------- 226
           +  +  +LLS   D  +++ D              A V +L  D H +  + V       
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDV----------GTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 227 ----SLEDGTIKGFDIR----TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 278
               S  D  ++  + R     A+ D      +    +   +  + T  ++ +       
Sbjct: 190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM------- 242
Query: 279 GSTDKMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337
             +++ V LWD  +  +P  +   +  +G +    F  D+  V   G     +  ++  S
Sbjct: 243 --SERQVALWDTKHLEEPLSLQELDTSSGVLLPF-FDPDTNIVYLCGKGDSSIRYFEITS 299
Query: 338 DAGISNRFSKYS 349
           +A   +  S +S
Sbjct: 300 EAPFLHYLSMFS 311

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 37/243 (15%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H+ SV G+A++ + + I ASAS DK VK+W+   G+   TL  H+  V  VA+     Q 
Sbjct: 220 HSSSVRGVAFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAF-RPDGQT 276
Query: 181 LLSGSFDRSVVMKDAR------ISTHSGFKWAVA--ADVESLA----------WDPHAEH 222
           + S S D++V + +        ++ HS   W VA   D +++A          W+ + +H
Sbjct: 277 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH 336
Query: 223 SFVVSLEDGTIKGF----DIRTAKSDPD-------STSQQSSFTLHAHDKAVCTISYNPL 271
              ++    ++ G     D +T  S  D       + + Q   TL  H  +V  ++++P 
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP- 395
Query: 272 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE 331
               +A+ S DK VKLW   N     + +    + +V+ VAFS D   + +    K  ++
Sbjct: 396 DGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK-TVK 451
Query: 332 IWD 334
           +W+
Sbjct: 452 LWN 454

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 25/177 (14%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H+  V GLAW  +    LAS   D  V+IWD  +     T  +H   V+AVAW      +
Sbjct: 216 HSSEVCGLAWRSDGLQ-LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 274
Query: 181 LLS--GSFDRSV----VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 234
           L +  G+ D+ +        AR++T         + V SL W PH++       E  +  
Sbjct: 275 LATGGGTMDKQIHFWNAATGARVNTVDA-----GSQVTSLIWSPHSK-------EIMSTH 322
Query: 235 GF-DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN--LLATGSTDKMVKLW 288
           GF D   +     S+       + AHD  V    Y+ L P+  +L+T ++D+ +K W
Sbjct: 323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVL---YSALSPDGRILSTAASDENLKFW 376

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 25/213 (11%)
Query: 136 NILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQI---LLSGSFDRSVV 191
           N++A A  ++ V +W+  +G  +   E   +  V +V W+H    +   L +G  D   V
Sbjct: 105 NVVAVA-LERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163
Query: 192 MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ 251
               ++ T +G +    A V  L+W+ H   S       G I   D+R A          
Sbjct: 164 ESQTKLRTMAGHQ----ARVGCLSWNRHVLSS---GSRSGAIHHHDVRIA--------NH 208
Query: 252 SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 311
              TL  H   VC +++      L A+G  D +V++WD  ++ P    ++     AV +V
Sbjct: 209 QIGTLQGHSSEVCGLAWRSDGLQL-ASGGNDNVVQIWDARSSIPKF--TKTNHNAAVKAV 265
Query: 312 AFSEDSPFVLAIGGSK--GKLEIWDTLSDAGIS 342
           A+      +LA GG     ++  W+  + A ++
Sbjct: 266 AWCPWQSNLLATGGGTMDKQIHFWNAATGARVN 298

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 37/230 (16%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIW-----DVAAGKCNLTLEHHTDKVQAVAWNH 175
           HTD V  +A   +  +I+ SAS DK + +W     D A G     L  H+  V+ V  + 
Sbjct: 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS 440
Query: 176 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 235
              Q  LSGS+D  + +            W +AA V +  +  H +    V+    ++  
Sbjct: 441 DG-QFALSGSWDGELRL------------WDLAAGVSTRRFVGHTKDVLSVAF---SLDN 484
Query: 236 FDIRTAKSDPD----STSQQSSFTL----HAHDKAVCTISYNP--LVPNLLATGSTDKMV 285
             I +A  D      +T  +  +T+      H   V  + ++P  L P ++ + S DK V
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV-SASWDKTV 543
Query: 286 KLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
           K+W+LSN +  S +A      G V +VA S D     A GG  G + +WD
Sbjct: 544 KVWNLSNCKLRSTLAGHT---GYVSTVAVSPDGSLC-ASGGKDGVVLLWD 589

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H D VL  A++ +  + +A+ SADK+VKIWD A GK   T + H+++V    + + S  +
Sbjct: 663 HEDEVLCCAFSSD-DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL 721
Query: 181 LL-SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 239
           LL +GS D  + + D          +     V    + P  E     S  DGT++ +D+R
Sbjct: 722 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS-ADGTLRLWDVR 780
Query: 240 TA 241
           +A
Sbjct: 781 SA 782

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 85/220 (38%), Gaps = 62/220 (28%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           HTD+V    ++++ + I AS  ADK ++++    G+  L ++ H D+V   A++      
Sbjct: 621 HTDAVYHACFSQDGQRI-ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS----- 674
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
                        D+ I+T S       AD +   WD                       
Sbjct: 675 ------------DDSYIATCS-------ADKKVKIWD----------------------- 692
Query: 241 AKSDPDSTSQQSSFTLHAHDKAV-CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 299
                 S + +   T   H + V C    N     LLATGS D  +KLWDL  NQ  C  
Sbjct: 693 ------SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL--NQKEC-- 742
Query: 300 SRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLS 337
            RN   G   SV     SP   +LA   + G L +WD  S
Sbjct: 743 -RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H D VL  A++ +  + +A+ SADK+VKIWD A GK   T + H+++V    + + S  +
Sbjct: 656 HEDEVLCCAFSSD-DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL 714
Query: 181 LL-SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 239
           LL +GS D  + + D          +     V    + P  E     S  DGT++ +D+R
Sbjct: 715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS-ADGTLRLWDVR 773
Query: 240 TA 241
           +A
Sbjct: 774 SA 775

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 85/220 (38%), Gaps = 62/220 (28%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           HTD+V    ++++ + I AS  ADK ++++    G+  L ++ H D+V   A++      
Sbjct: 614 HTDAVYHACFSQDGQRI-ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS----- 667
Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
                        D+ I+T S       AD +   WD                       
Sbjct: 668 ------------DDSYIATCS-------ADKKVKIWD----------------------- 685
Query: 241 AKSDPDSTSQQSSFTLHAHDKAV-CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 299
                 S + +   T   H + V C    N     LLATGS D  +KLWDL  NQ  C  
Sbjct: 686 ------SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL--NQKEC-- 735
Query: 300 SRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLS 337
            RN   G   SV     SP   +LA   + G L +WD  S
Sbjct: 736 -RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774

>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 238 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISY-NPLVPNLLATGSTDKMVKLWDLSNNQPS 296
           I+  K D D+++ + S +  AHD ++  I + +P    ++A+ S DK VKLW+   +Q  
Sbjct: 33  IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE 92
Query: 297 CIASR-------NPKAGAVFSVAFS-EDSPFVLAIGGSKGKLEIWDTL 336
           C   R       N   G+++SV F+       LA  G+ G L ++D L
Sbjct: 93  CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 140

>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 238 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISY-NPLVPNLLATGSTDKMVKLWDLSNNQPS 296
           I+  K D D+++ + S +  AHD ++  I + +P    ++A+ S DK VKLW+   +Q  
Sbjct: 35  IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE 94
Query: 297 CIASR-------NPKAGAVFSVAFSEDS-PFVLAIGGSKGKLEIWDTL 336
           C   R       N   G+++SV F+       LA  G+ G L ++D L
Sbjct: 95  CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142

>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 238 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISY-NPLVPNLLATGSTDKMVKLWDLSNNQPS 296
           I+  K D D+++ + S +  AHD ++  I + +P    ++A+ S DK VKLW+   +Q  
Sbjct: 35  IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE 94
Query: 297 CIASR-------NPKAGAVFSVAFSEDS-PFVLAIGGSKGKLEIWDTL 336
           C   R       N   G+++SV F+       LA  G+ G L ++D L
Sbjct: 95  CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 27/225 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH-SP- 178
           H  SV  + W      +  S+S DK +K+WD      N          +   ++HH SP 
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT-----NTLQTADVFNFEETVYSHHMSPV 152
Query: 179 ----QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 234
                ++  G+    V + D +  + S        ++ +++W P  ++    +  D  +K
Sbjct: 153 STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK 212
Query: 235 GFDIRTAK---------SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 285
            +D+R A          +   S + +S+ T  AH+  V  + +     +LL  G TD  +
Sbjct: 213 LWDVRRASGCLITLDQHNGKKSQAVESANT--AHNGKVNGLCFTSDGLHLLTVG-TDNRM 269
Query: 286 KLWDLSNNQPSCI----ASRNPKAGAVFSVAFSEDSPFVLAIGGS 326
           +LW+ SN + + +       N K G  F+V+    S FV    GS
Sbjct: 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS 314

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 27/227 (11%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H+  V  L W  E +N + SAS D ++ +W+    +    ++ H   V   A+  +   +
Sbjct: 65  HSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV 123
Query: 181 L------------LSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDPHAEHSFVVS 227
                        LS   DR   M  +R+ T H G+         S  + P  E   +  
Sbjct: 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY-------ASSCQYVPDQETRLITG 176
Query: 228 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 287
             D T   +D+ T +      S+  S     H   V ++S N L  N+  +GS D  V+L
Sbjct: 177 SGDQTCVLWDVTTGQRISIFGSEFPS----GHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 288 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
           WDL     + + + +   G + SV F  D       G   G   ++D
Sbjct: 233 WDLRITSRA-VRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFD 277

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 31/190 (16%)
Query: 167 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAV-AADVES----------- 213
           +    AW+H    +L+SG+   +V   DA  ST S  + W++ AAD E            
Sbjct: 14  RTATFAWSHDKIPLLVSGTVSGTV---DANFSTDSSLELWSLLAADSEKPIASLQVDSKF 70
Query: 214 --LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 271
             L W  H       +L++G+++ +    A +  +S ++ S+     H  +V T+ +N  
Sbjct: 71  NDLDWS-HNNKIIAGALDNGSLELYSTNEANNAINSMARFSN-----HSSSVKTVKFNAK 124
Query: 272 VPNLLATGSTDKMVKLWDL-------SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 324
             N+LA+G  +  + +WD+       SN  P            V S+A+++    V A  
Sbjct: 125 QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA 184
Query: 325 GSKGKLEIWD 334
           GS     IWD
Sbjct: 185 GSSNFASIWD 194

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 133 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH--SPQILLSGSFDR 188
           +F  ILAS S D +V IW    G+ +    H  H+  V +V W  H   P +L++ S  +
Sbjct: 65  KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK 124
Query: 189 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 240
            SVV      +T      A A  V S +W P       EH+           G D  ++ 
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 298
            K + D+ +     TL  H   V  ++++P  L+ + +A+ S D+   +W   N Q    
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK 244
Query: 299 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 333
            +  +  K   V   A    S  VLA+ G   K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195
           NI+ S S D  + +WDVA  KC   L  HTD++ +  ++H   +  +S S D ++ + D 
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC-ISASMDTTIRIWDL 339
Query: 196 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255
               +    + +      +     ++   V +  DG+I+G+         D+      F+
Sbjct: 340 E---NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW---------DANDYSRKFS 387
Query: 256 LHAHDKAVCTISYNPLVPNLLATGSTDKM 284
            H  + +  T  Y  +  N+L +GS ++ 
Sbjct: 388 YHHTNLSAITTFY--VSDNILVSGSENQF 414

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195
           NI+ S S D  + +WDVA  KC   L  HTD++ +  ++H   +  +S S D ++ + D 
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRC-ISASXDTTIRIWDL 339
Query: 196 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255
               +    + +      +     ++   V +  DG+I+G+         D+      F+
Sbjct: 340 E---NGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW---------DANDYSRKFS 387
Query: 256 LHAHDKAVCTISYNPLVPNLLATGSTDKM 284
            H  + +  T  Y  +  N+L +GS ++ 
Sbjct: 388 YHHTNLSAITTFY--VSDNILVSGSENQF 414

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 133 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH--SPQILLSGSFDR 188
           +F  ILAS S D +V IW    G+ +    H  H+  V +V W  H   P +L++ S  +
Sbjct: 65  KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 189 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 240
            SVV      +T      A A  V S +W P       EH+           G D  ++ 
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 298
            K + D+ +     TL  H   V  ++++P  L+ + LA+ S D+   +W   N Q    
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 244
Query: 299 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 333
            +  +  K   V   A    S  VLA+ G   K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 133 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH--SPQILLSGSFDR 188
           +F  ILAS S D +V IW    G+ +    H  H+  V +V W  H   P +L++ S  +
Sbjct: 67  KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 126
Query: 189 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 240
            SVV      +T      A A  V S +W P       EH+           G D  ++ 
Sbjct: 127 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 186
Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 298
            K + D+ +     TL  H   V  ++++P  L+ + LA+ S D+   +W   N Q    
Sbjct: 187 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 246
Query: 299 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 333
            +  +  K   V   A    S  VLA+ G   K+ +W
Sbjct: 247 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 11/157 (7%)
Query: 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 199
           S S D  +K+WD+A      +   H  +V  VA + H   + LS S D  +++ D R   
Sbjct: 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203
Query: 200 HSGFKWAVAADV--ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH 257
            +      A      SLAW P     FV   E+GT+   D +         S     +  
Sbjct: 204 PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK---------STSCVLSSA 254
Query: 258 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
            H + V  + ++P     LA+ S D  + + D S ++
Sbjct: 255 VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE 291

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 16/217 (7%)
Query: 133 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH--SPQILLSGSFDR 188
           +F  ILAS S D +V IW    G+ +    H  H+  V +V W  H   P +L++ S  +
Sbjct: 65  KFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGK 124
Query: 189 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 240
            SVV      +T      A A  V S +W P       EH+           G D  ++ 
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 298
            K + D+ +     TL  H   V  ++++P  L+ +  A+ S D+   +W   N Q    
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWK 244
Query: 299 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 333
            +  +  K   V   A    S  VLA+ G   K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 27/224 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-----TLEHHTDKVQAVAWNH 175
           H   V  +A   +F +++ SAS DK + +W +   + N       L  H+  V  V  + 
Sbjct: 37  HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 96
Query: 176 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 235
              Q  LSGS+D ++ + D    T +        DV S+A+        V    D TIK 
Sbjct: 97  DG-QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTIKL 154
Query: 236 FDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPN-LLATGSTDKMVKLWDLSN 292
           ++          T     +T+   +H + V  + ++P   N ++ +   DK+VK+W+L+N
Sbjct: 155 WN----------TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Query: 293 NQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
               C    N     G + +V  S D     A GG  G+  +WD
Sbjct: 205 ----CKLKTNHIGHTGYLNTVTVSPDGSLC-ASGGKDGQAMLWD 243

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 27/224 (12%)
Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-----TLEHHTDKVQAVAWNH 175
           H   V  +A   +F +++ SAS DK + +W +   + N       L  H+  V  V  + 
Sbjct: 14  HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 73
Query: 176 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 235
              Q  LSGS+D ++ + D    T +        DV S+A+        V    D TIK 
Sbjct: 74  DG-QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTIKL 131
Query: 236 FDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPN-LLATGSTDKMVKLWDLSN 292
           ++          T     +T+   +H + V  + ++P   N ++ +   DK+VK+W+L+N
Sbjct: 132 WN----------TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Query: 293 NQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
               C    N     G + +V  S D     A GG  G+  +WD
Sbjct: 182 ----CKLKTNHIGHTGYLNTVTVSPDGSLC-ASGGKDGQAMLWD 220

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 11/160 (6%)
Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195
           N   SAS D  +++W++  G+C      HT  V +VA++  + QI+  G  +   V    
Sbjct: 80  NFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK 139
Query: 196 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSF 254
               H+  + A    V  + + P  +   +VS   D  +K +D+ T +   D        
Sbjct: 140 GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD-------- 191
Query: 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
            L  H   V +++ +P   +L A+   D + +LWDL+  +
Sbjct: 192 -LKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWDLTKGE 229

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 133 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHS--PQILLSGSFDR 188
           +F  ILAS S D +V IW    G+ +    H  H+  V +V W  H   P +L++ S  +
Sbjct: 65  KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 189 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 240
            SVV      +T      A A  V S +W P       EH+           G D  ++ 
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 298
            K + D+ +     TL  H   V  ++++P  L+ + LA+ S D+   +W   N Q    
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 244
Query: 299 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 333
            +  +  K   V   A    S  VLA+ G   K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 38/182 (20%)
Query: 134 FRNILASASADKQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNH-HSPQILLSGSFDRSV 190
           +   LA+ S+D+ VKI+DV  G   L   L  H   V  VAW H     IL S S+DR V
Sbjct: 24  YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 191 VMKDARIST------HSGFKWAVAADVESLAWDPHAEHSFVVSL--EDGTIKGFDIRTAK 242
           ++      T      H+G      + V S+ W PH ++  +++    DG I    + T  
Sbjct: 84  IIWREENGTWEKSHEHAGHD----SSVNSVCWAPH-DYGLILACGSSDGAIS---LLTYT 135
Query: 243 SDPDSTSQQSSFTLHAHDKAVCTISYNPLV-------------PNLL---ATGSTDKMVK 286
            +     ++ +   +AH      +S+ P V             PN +   A+G  D ++K
Sbjct: 136 GEGQWEVKKIN---NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIK 192
Query: 287 LW 288
           LW
Sbjct: 193 LW 194

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.93
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.84
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.83
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.82
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.81
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.8
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.79
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.77
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.76
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.75
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.73
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.73
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.73
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.72
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.72
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.71
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.7
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.7
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.7
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.69
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.69
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.69
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.67
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.65
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.65
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.63
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.63
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.63
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.62
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.59
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.59
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.58
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.57
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.57
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.56
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.56
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.56
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.52
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.5
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.48
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.48
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.47
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.45
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.44
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.39
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.39
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.37
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.36
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.35
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.35
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.33
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.33
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.28
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.27
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.26
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.26
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.22
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.21
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.19
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.19
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.17
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.17
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.16
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.14
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.14
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.13
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.11
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.1
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.1
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.09
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.09
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.09
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.07
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.05
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.04
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.0
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.97
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.96
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.96
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.95
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.94
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.94
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.9
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.86
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.85
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.85
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.84
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.82
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.82
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.79
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.79
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.77
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.73
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.73
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.73
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.72
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.72
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.72
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.7
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.7
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.69
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.68
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.6
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.59
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.59
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.56
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.54
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.52
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.5
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.49
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.49
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.47
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.44
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.43
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.41
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.35
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.35
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.34
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.33
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.29
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.24
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.2
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.2
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.18
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.14
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.09
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.01
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.99
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.97
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.93
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.92
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.89
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.8
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.8
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.72
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.66
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.57
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.56
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.49
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.49
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.43
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.4
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.37
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.35
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.31
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.26
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.2
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.16
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.08
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.06
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.05
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.91
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.88
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.7
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.61
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.55
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.53
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.49
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.44
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.43
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.4
3ott_A	758	Two-component system sensor histidine kinase; beta	96.38
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.36
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.24
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.19
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.16
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.66
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.58
3ott_A	758	Two-component system sensor histidine kinase; beta	95.37
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.74
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.38
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.18
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.5
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	93.03
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.35
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	91.85
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.41
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	90.95
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.6
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	89.64
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	88.67
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	88.03
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	87.98
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	83.74

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.8e-49  Score=334.58  Aligned_cols=294  Identities=20%  Similarity=0.241  Sum_probs=232.6

Q ss_pred             CcccCCCcEEEEEEecCCCc--eEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293            1 MTINPNDAVIVCARNEDDVS--HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE   78 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~   78 (358)
                      ++|+|+|++|+++. ++..+  ...+++|+........-...........+.++.|       +|++ .|++|+.||.|+
T Consensus        36 ~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~d~-~l~~~s~dg~v~  106 (344)
T 4gqb_B           36 ARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW-------VGER-GILVASDSGAVE  106 (344)
T ss_dssp             EEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE-------ETTT-EEEEEETTSEEE
T ss_pred             EEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE-------eCCC-eEEEEECCCEEE
Confidence            46999999998775 43222  1245555543211111111111112233445555       7775 688999999999


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN  158 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  158 (358)
                      |||+.+++....                       ....+.+|.+.|++++|+|+ +++|++|+.|++|++||+++++++
T Consensus       107 lWd~~~~~~~~~-----------------------~~~~~~~H~~~V~~v~~spd-g~~l~sgs~d~~i~iwd~~~~~~~  162 (344)
T 4gqb_B          107 LWELDENETLIV-----------------------SKFCKYEHDDIVSTVSVLSS-GTQAVSGSKDICIKVWDLAQQVVL  162 (344)
T ss_dssp             EEEECTTSSCEE-----------------------EEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEeccCCCceeE-----------------------eeccccCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEE
Confidence            999987654432                       11234579999999999999 679999999999999999999999


Q ss_pred             eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce--eeecCCeeeEEEcCCCCCeEEEEecCCeEEEE
Q 018293          159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADVESLAWDPHAEHSFVVSLEDGTIKGF  236 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~  236 (358)
                      ..+.+|...|.+++|++++..+|++++.|++|++||+++++.....  ..+...+.+++|+|++++++++|+.||.|++|
T Consensus       163 ~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~w  242 (344)
T 4gqb_B          163 SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV  242 (344)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred             EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEE
Confidence            9999999999999999998778999999999999999988765533  23456789999999888899999999999999


Q ss_pred             EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293          237 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                      |++++         +++..+.+|...|++++|+|++..+|++|+.|++|++||+++++   +....+|.+.|++++|+|+
T Consensus       243 d~~~~---------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---~~~~~~H~~~V~~v~~sp~  310 (344)
T 4gqb_B          243 DTKST---------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---LFRSQAHRDFVRDATWSPL  310 (344)
T ss_dssp             ESCC-----------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---EEEECCCSSCEEEEEECSS
T ss_pred             ECCCC---------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---EEEEcCCCCCEEEEEEeCC
Confidence            99987         77889999999999999999986789999999999999999886   3456889999999999999


Q ss_pred             CCeEEEEEccCCeEEEEEccCCC
Q 018293          317 SPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       317 ~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      ++++|++++.||+|++|++.+..
T Consensus       311 ~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          311 NHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             STTEEEEEETTSCEEEEECCC--
T ss_pred             CCeEEEEEcCCCeEEEEECCCCC
Confidence            98788999999999999998754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.4e-48  Score=327.62  Aligned_cols=299  Identities=20%  Similarity=0.255  Sum_probs=228.3

Q ss_pred             CcccCCCcEEEEEEecCCCc--eEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293            1 MTINPNDAVIVCARNEDDVS--HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE   78 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~   78 (358)
                      ++|+|+|++|+++..+. ..  ...+++|+...+................+.++.|       +|++++| +++.||.|+
T Consensus        48 v~fSpDG~~las~s~d~-~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-------s~d~~~l-~~s~dg~v~  118 (357)
T 4g56_B           48 VRYRRDGALLLAASSLS-SRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAW-------VSEKGIL-VASDSGAVE  118 (357)
T ss_dssp             EEECSSSCEEEEEECSS-SSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEE-------ETTTEEE-EEETTSCEE
T ss_pred             EEECCCCCEEEEEcCCC-CccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEE-------cCCCCEE-EEECCCEEE
Confidence            47999999999996532 11  2368888876542221111111122233446655       7888655 567799999


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN  158 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  158 (358)
                      |||+.+++....                       ......+|...|++++|+|+ +++|++|+.|+.|++||+++++++
T Consensus       119 lWd~~~~~~~~~-----------------------~~~~~~~h~~~V~~v~~spd-g~~l~sgs~dg~v~iwd~~~~~~~  174 (357)
T 4g56_B          119 LWEILEKESLLV-----------------------NKFAKYEHDDIVKTLSVFSD-GTQAVSGGKDFSVKVWDLSQKAVL  174 (357)
T ss_dssp             EC--------CC-----------------------CCEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTTEEE
T ss_pred             EeeccccceeEE-----------------------EeeccCCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEE
Confidence            999986543321                       11233479999999999999 679999999999999999999999


Q ss_pred             eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee--eecCCeeeEEEcCCCCCeEEEEecCCeEEEE
Q 018293          159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVVSLEDGTIKGF  236 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~  236 (358)
                      ..+.+|...|++++|++++..++++++.||.|++||+++++......  .+...+.+++|+|+++.++++|+.|+.|++|
T Consensus       175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~w  254 (357)
T 4g56_B          175 KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLV  254 (357)
T ss_dssp             EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEE
T ss_pred             EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEE
Confidence            99999999999999999986789999999999999999887654332  3567799999999888899999999999999


Q ss_pred             EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcC-
Q 018293          237 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE-  315 (358)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-  315 (358)
                      |++++         +....+..|...|++++|+|++..+|++|+.|++|+|||+++++.  + ...+|...|++++|+| 
T Consensus       255 d~~~~---------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~--~-~~~~H~~~V~~vafsP~  322 (357)
T 4g56_B          255 NIKNP---------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV--F-RDLSHRDFVTGVAWSPL  322 (357)
T ss_dssp             ESSCG---------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE--E-EECCCSSCEEEEEECSS
T ss_pred             ECCCC---------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE--e-EECCCCCCEEEEEEeCC
Confidence            99987         778889999999999999999877899999999999999998863  3 3457999999999999 


Q ss_pred             CCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          316 DSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       316 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      ++. +|++++.||.|++|++.+.......+
T Consensus       323 d~~-~l~s~s~Dg~v~iW~~~~~~~~~~~i  351 (357)
T 4g56_B          323 DHS-KFTTVGWDHKVLHHHLPSEGRTENLI  351 (357)
T ss_dssp             STT-EEEEEETTSCEEEEECC---------
T ss_pred             CCC-EEEEEcCCCeEEEEECCCCCcccccc
Confidence            677 69999999999999997755544433

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.7e-47  Score=327.93  Aligned_cols=278  Identities=22%  Similarity=0.374  Sum_probs=240.7

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|+|++++|++|..++     .+.+|+...+.....+..|.    ..+.++.|       +|++++|++|+.||+|++|
T Consensus       114 ~~~~p~~~~l~s~s~Dg-----~i~vwd~~~~~~~~~l~~h~----~~V~~v~~-------~~~~~~l~sgs~D~~i~iw  177 (410)
T 1vyh_C          114 VIFHPVFSVMVSASEDA-----TIKVWDYETGDFERTLKGHT----DSVQDISF-------DHSGKLLASCSADMTIKLW  177 (410)
T ss_dssp             EEECSSSSEEEEEESSS-----CEEEEETTTCCCCEEECCCS----SCEEEEEE-------CTTSSEEEEEETTSCCCEE
T ss_pred             EEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEeccC----CcEEEEEE-------cCCCCEEEEEeCCCeEEEE
Confidence            46899999999998887     78888877654444444342    23345555       8999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      |+.+.+.                           ...+.+|...|.+++|+|+ +.+|++|+.|++|++||+++++++..
T Consensus       178 d~~~~~~---------------------------~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~~~~~~~~~  229 (410)
T 1vyh_C          178 DFQGFEC---------------------------IRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKT  229 (410)
T ss_dssp             ETTSSCE---------------------------EECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             eCCCCce---------------------------eEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            9975432                           2345689999999999999 67999999999999999999999999


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC-------------------C
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA-------------------E  221 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------~  221 (358)
                      +.+|...|.++.|+|++ .++++++.|+.|++||+++.+.......|...|.+++|+|++                   +
T Consensus       230 ~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  308 (410)
T 1vyh_C          230 FTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG  308 (410)
T ss_dssp             EECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred             EeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCC
Confidence            99999999999999999 899999999999999999888777677888999999999953                   4


Q ss_pred             CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec
Q 018293          222 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR  301 (358)
Q Consensus       222 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  301 (358)
                      .++++|+.|+.|++||++++         ..+..+.+|...|.+++|+|++ .+|++|+.||.|++||+.+++  ++..+
T Consensus       309 ~~l~sgs~D~~i~iwd~~~~---------~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~--~~~~~  376 (410)
T 1vyh_C          309 PFLLSGSRDKTIKMWDVSTG---------MCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKR--CMKTL  376 (410)
T ss_dssp             CEEEEEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSC--CCEEE
T ss_pred             CEEEEEeCCCeEEEEECCCC---------ceEEEEECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc--eEEEE
Confidence            58999999999999999987         7788899999999999999998 899999999999999998887  45667


Q ss_pred             CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       302 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      .+|...|++++|+|++++ |++|+.||.|++|+++
T Consensus       377 ~~h~~~v~~l~~~~~~~~-l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          377 NAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWECR  410 (410)
T ss_dssp             ECCSSCEEEEEECSSSSC-EEEEETTSEEEEEC--
T ss_pred             cCCCCcEEEEEEcCCCCE-EEEEeCCCcEEEEeCC
Confidence            789999999999999995 8999999999999863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7.9e-45  Score=306.98  Aligned_cols=278  Identities=18%  Similarity=0.329  Sum_probs=231.9

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|+|++++|+++..++     .+.+|+...+.....+..|    ...+.++.|       +|++++|++|+.|+.|++|
T Consensus        61 ~~~s~d~~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~----~~~v~~~~~-------s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           61 MHWGTDSRLLLSASQDG-----KLIIWDSYTTNKVHAIPLR----SSWVMTCAY-------APSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             EEECTTSSEEEEEETTT-----EEEEEETTTCCEEEEEECS----SSCEEEEEE-------CTTSSEEEEEETTCEEEEE
T ss_pred             EEECCCCCEEEEEeCCC-----cEEEEECCCCCcceEeecC----CccEEEEEE-------CCCCCEEEEEeCCCeEEEE
Confidence            46899999999998887     8888887765322222222    223334444       8999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      ++.+.+..                       ......+.+|...|.++.|+++ + .+++++.|++|++||+++++++..
T Consensus       125 ~~~~~~~~-----------------------~~~~~~~~~h~~~v~~~~~~~~-~-~l~s~s~d~~i~~wd~~~~~~~~~  179 (340)
T 1got_B          125 NLKTREGN-----------------------VRVSRELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCALWDIETGQQTTT  179 (340)
T ss_dssp             ETTTCSBS-----------------------CEEEEEEECCSSCEEEEEEEET-T-EEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ECccCCCc-----------------------ceeEEEecCCCccEEEEEECCC-C-cEEEEECCCcEEEEECCCCcEEEE
Confidence            99753321                       1223345689999999999987 4 589999999999999999999999


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      +.+|...|.+++|+|++ .++++++.|+.|++||++++........|...|.+++|+|+ +.++++|+.||.|++||++.
T Consensus       180 ~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~d~~v~iwd~~~  257 (340)
T 1got_B          180 FTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTT
T ss_pred             EcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCC-CCEEEEEcCCCcEEEEECCC
Confidence            99999999999999998 89999999999999999988877767778899999999995 56999999999999999987


Q ss_pred             CCCCCCCCCCCccEEEee--cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCC
Q 018293          241 AKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP  318 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  318 (358)
                      .         ..+..+..  +...|.+++|+|++ .+|++|+.||.|++||+.+.+  ....+.+|...|.+++|+|++.
T Consensus       258 ~---------~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~s~dg~  325 (340)
T 1got_B          258 D---------QELMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLGVTDDGM  325 (340)
T ss_dssp             T---------EEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSS
T ss_pred             C---------cEEEEEccCCcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCc--EeeEeecCCCcEEEEEEcCCCC
Confidence            6         44444432  23579999999998 899999999999999999887  4666788999999999999999


Q ss_pred             eEEEEEccCCeEEEEE
Q 018293          319 FVLAIGGSKGKLEIWD  334 (358)
Q Consensus       319 ~~l~~~~~dg~i~vw~  334 (358)
                      + |++|+.||.|++||
T Consensus       326 ~-l~s~s~D~~i~iWd  340 (340)
T 1got_B          326 A-VATGSWDSFLKIWN  340 (340)
T ss_dssp             C-EEEEETTSCEEEEC
T ss_pred             E-EEEEcCCccEEecC
Confidence            5 89999999999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.8e-45  Score=312.90  Aligned_cols=290  Identities=20%  Similarity=0.304  Sum_probs=233.6

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|+|+++.|++|..++     .+.+|+...+.....+..|    ...+.++       +|+|+|++|++|+.|+.+++|
T Consensus        72 ~~~sp~~~~l~s~s~D~-----~v~iWd~~~~~~~~~~~~h----~~~v~~~-------~~s~~g~~las~~~d~~v~iw  135 (380)
T 3iz6_a           72 LDWTPEKNWIVSASQDG-----RLIVWNALTSQKTHAIKLH----CPWVMEC-------AFAPNGQSVACGGLDSACSIF  135 (380)
T ss_dssp             EEECTTSSCEEEEETTS-----EEEEEETTTTEEEEEEECC----CTTCCCC-------EECTTSSEEEECCSSSCCEEE
T ss_pred             EEEcCCCCEEEEEeCCC-----eEEEEECCCCccceEEecC----CCCEEEE-------EECCCCCEEEEeeCCCcEEEE
Confidence            47899999999998887     8888887764222222222    2223344       459999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      ++.+.....                    ........+.+|.+.|.++.|+|+++..|++|+.|++|++||+.+++.+..
T Consensus       136 ~~~~~~~~~--------------------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~  195 (380)
T 3iz6_a          136 NLSSQADRD--------------------GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI  195 (380)
T ss_dssp             ECCCCSSCC--------------------CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred             ECCCCcccc--------------------CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence            997532211                    112334457789999999999998777899999999999999999988877


Q ss_pred             e-----cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC-CCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEE
Q 018293          161 L-----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK  234 (358)
Q Consensus       161 ~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~  234 (358)
                      +     .+|...|.+++|++.++.++++|+.|+.|++||++.. ........|...|.+++|+|+ +.++++|+.||.|+
T Consensus       196 ~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~  274 (380)
T 3iz6_a          196 FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD-GQRFGTGSDDGTCR  274 (380)
T ss_dssp             ECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTT-SSEEEEECSSSCEE
T ss_pred             eecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecC-CCeEEEEcCCCeEE
Confidence            6     5788999999998854489999999999999999844 555556678999999999995 56999999999999


Q ss_pred             EEEcccCCCCCCCCCCCccEEEeec-------CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec----CC
Q 018293          235 GFDIRTAKSDPDSTSQQSSFTLHAH-------DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR----NP  303 (358)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~  303 (358)
                      +||++++         ..+..+..+       ...+++++|+|++ .+|++|+.||.|++||+..++.  ...+    .+
T Consensus       275 lwd~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~~  342 (380)
T 3iz6_a          275 LFDMRTG---------HQLQVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEM--VLNLGTLQNS  342 (380)
T ss_dssp             EEETTTT---------EEEEEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCE--EEEECCSCSS
T ss_pred             EEECCCC---------cEEEEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCce--EEEEecccCC
Confidence            9999987         444444433       2348999999998 8999999999999999988873  3333    57


Q ss_pred             CCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          304 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       304 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      |.+.|.+++|+|+|+ .|++|+.||.|++|++...+.
T Consensus       343 h~~~v~~l~~s~dg~-~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          343 HEGRISCLGLSSDGS-ALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             CCCCCCEEEECSSSS-EEEEECTTSCEEEEECCSSSS
T ss_pred             CCCceEEEEECCCCC-EEEEeeCCCCEEEEecCCCcc
Confidence            899999999999999 599999999999999987654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.9e-44  Score=299.83  Aligned_cols=281  Identities=20%  Similarity=0.246  Sum_probs=229.0

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|+|+++.|+++..++     .+.+|+...+.....+..|    .....++.       |+|++++|++|+.|+.|++|
T Consensus        19 ~~fsp~~~~l~s~~~dg-----~v~lWd~~~~~~~~~~~~~----~~~v~~~~-------~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A           19 IDFHPTEPWVLTTLYSG-----RVELWNYETQVEVRSIQVT----ETPVRAGK-------FIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             EEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEECC----SSCEEEEE-------EEGGGTEEEEEETTSEEEEE
T ss_pred             EEECCCCCEEEEEcCCC-----cEEEEECCCCceeEEeecc----CCcEEEEE-------EeCCCCEEEEECCCCEEEEE
Confidence            47999999999998887     8888888765222222222    22233444       48899999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC-ceee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-KCNL  159 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~  159 (358)
                      |+.+++..                           ..+.+|...|.+++|+|+ +.+|++|+.|++|++||++++ ....
T Consensus        83 d~~~~~~~---------------------------~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~lWd~~~~~~~~~  134 (304)
T 2ynn_A           83 NYNTGEKV---------------------------VDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQ  134 (304)
T ss_dssp             ETTTCCEE---------------------------EEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEEEGGGTTEEEE
T ss_pred             ECCCCcEE---------------------------EEEeCCCCcEEEEEEcCC-CCEEEEECCCCeEEEEECCCCcchhh
Confidence            99764432                           245579999999999999 679999999999999999887 4567


Q ss_pred             eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-eecCCeeeEEEcCC-CCCeEEEEecCCeEEEEE
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPH-AEHSFVVSLEDGTIKGFD  237 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~-~~~~~~~~~~dg~i~i~d  237 (358)
                      .+.+|...|.+++|+|.++..|++++.|+.|++||++......... .+...+..+.|+|. ++.++++++.|+.|++||
T Consensus       135 ~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd  214 (304)
T 2ynn_A          135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD  214 (304)
T ss_dssp             EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEE
T ss_pred             hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEe
Confidence            7889999999999999655899999999999999998776554333 35578899999874 346899999999999999


Q ss_pred             cccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293          238 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS  317 (358)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  317 (358)
                      ++++         .++..+.+|...|.+++|+|++ .+|++|+.||.|++||+++.+  ....+..|...+.+++|+|++
T Consensus       215 ~~~~---------~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~  282 (304)
T 2ynn_A          215 YQTK---------SCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYK--VEKTLNVGLERSWCIATHPTG  282 (304)
T ss_dssp             TTTT---------EEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCC--EEEEECCSSSSEEEEEECTTC
T ss_pred             CCCC---------ccceeeCCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc--eeeeccCCCccEEEEEECCCC
Confidence            9987         7788999999999999999998 899999999999999999987  566778888999999999988


Q ss_pred             Ce-EEEEEccCCeEEEEEccCC
Q 018293          318 PF-VLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       318 ~~-~l~~~~~dg~i~vw~~~~~  338 (358)
                      .. ++++|+ +..+.+|++.+.
T Consensus       283 ~~~~~asg~-~~g~~~~~~~~~  303 (304)
T 2ynn_A          283 RKNYIASGF-DNGFTVLSLGND  303 (304)
T ss_dssp             GGGCEEEEE-TTEEEEEECC--
T ss_pred             CceEEEEec-CCceEEEEeccC
Confidence            53 366665 555788887653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.6e-44  Score=300.99  Aligned_cols=275  Identities=21%  Similarity=0.316  Sum_probs=227.6

Q ss_pred             cccC----CCcEEEEEEecCCCceEEEEEEeccCCCCCc--eEeeceeecCCcccceeeecCCccccCCCceEEecCCCC
Q 018293            2 TINP----NDAVIVCARNEDDVSHLEVYILEESDGGDPN--LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP   75 (358)
Q Consensus         2 ~~~p----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg   75 (358)
                      +++|    ++..|++|..++     .+.+|+...+....  .+..|    ...+.++.|       ++++.++++|+.|+
T Consensus        39 ~~~~~~~~~~~~l~tgs~D~-----~v~vW~~~~~~~~~~~~l~gh----~~~v~~~~~-------~~~~~~l~s~s~D~  102 (321)
T 3ow8_A           39 AWGTNKKENSETVVTGSLDD-----LVKVWKWRDERLDLQWSLEGH----QLGVVSVDI-------SHTLPIAASSSLDA  102 (321)
T ss_dssp             EEC-------CEEEEEETTS-----CEEEEEEETTEEEEEEEECCC----SSCEEEEEE-------CSSSSEEEEEETTS
T ss_pred             EEecCCCCCCCEEEEEcCCC-----CEEEEECCCCCeeeeeeeccC----CCCEEEEEE-------CCCCCEEEEEeCCC
Confidence            4555    366888887665     44455543321000  11122    222334444       89999999999999


Q ss_pred             eEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC
Q 018293           76 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  155 (358)
Q Consensus        76 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  155 (358)
                      .|++||+.+++...                           .+..|...+.+++|+|+ +++|++|+.||.|++||++++
T Consensus       103 ~i~lWd~~~~~~~~---------------------------~~~~~~~~~~~~~~spd-g~~l~~g~~dg~v~i~~~~~~  154 (321)
T 3ow8_A          103 HIRLWDLENGKQIK---------------------------SIDAGPVDAWTLAFSPD-SQYLATGTHVGKVNIFGVESG  154 (321)
T ss_dssp             EEEEEETTTTEEEE---------------------------EEECCTTCCCCEEECTT-SSEEEEECTTSEEEEEETTTC
T ss_pred             cEEEEECCCCCEEE---------------------------EEeCCCccEEEEEECCC-CCEEEEEcCCCcEEEEEcCCC
Confidence            99999997644332                           33457788999999999 679999999999999999999


Q ss_pred             ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEE
Q 018293          156 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG  235 (358)
Q Consensus       156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i  235 (358)
                      +....+..|...+.+++|+|++ ++|++++.||.|++||+++++.......+...|.+++|+|+ +.++++++.||.|++
T Consensus       155 ~~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd-~~~l~s~s~dg~i~i  232 (321)
T 3ow8_A          155 KKEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD-SQLLVTASDDGYIKI  232 (321)
T ss_dssp             SEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTT-SCEEEEECTTSCEEE
T ss_pred             ceeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCC-CCEEEEEcCCCeEEE
Confidence            9999998899999999999999 89999999999999999988877666678899999999995 559999999999999


Q ss_pred             EEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcC
Q 018293          236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE  315 (358)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  315 (358)
                      ||++..         .....+.+|...|.+++|+|++ .+|++++.|+.|++||+++++  ++..+..|...|.+++|+|
T Consensus       233 wd~~~~---------~~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~--~~~~~~~h~~~v~~v~~s~  300 (321)
T 3ow8_A          233 YDVQHA---------NLAGTLSGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRT--CVHTFFDHQDQVWGVKYNG  300 (321)
T ss_dssp             EETTTC---------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT
T ss_pred             EECCCc---------ceeEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCE--EEEEEcCCCCcEEEEEECC
Confidence            999876         6778889999999999999998 899999999999999999887  6777889999999999999


Q ss_pred             CCCeEEEEEccCCeEEEEEc
Q 018293          316 DSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       316 ~~~~~l~~~~~dg~i~vw~~  335 (358)
                      +++ .|++++.||.|++||.
T Consensus       301 ~g~-~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          301 NGS-KIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             TSS-EEEEEETTCCEEEEEC
T ss_pred             CCC-EEEEEeCCCeEEEEeC
Confidence            999 5899999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.9e-44  Score=302.24  Aligned_cols=282  Identities=16%  Similarity=0.257  Sum_probs=231.5

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|+|+++.|++|..++     .+.+|+...+........+    ...+.++       +|+|+|++|++|+.|+.+++|
T Consensus        70 ~~~s~d~~~l~s~s~Dg-----~v~vWd~~~~~~~~~~~~~----~~~v~~~-------~~sp~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           70 MDWCKDKRRIVSSSQDG-----KVIVWDSFTTNKEHAVTMP----CTWVMAC-------AYAPSGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             EEECTTSSEEEEEETTS-----EEEEEETTTCCEEEEEECS----SSCCCEE-------EECTTSSEEEEESTTSEEEEE
T ss_pred             EEECCCCCEEEEEeCCC-----eEEEEECCCCCcceEEecC----CCCEEEE-------EECCCCCEEEEeeCCCCEEEE
Confidence            47899999999998887     8888887664222222111    2233344       448999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      ++.......                     .......+.+|...|.+++|+|+ +..|++++.|++|++||+++++++..
T Consensus       134 ~~~~~~~~~---------------------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~D~~v~lwd~~~~~~~~~  191 (354)
T 2pbi_B          134 PLTFDKNEN---------------------MAAKKKSVAMHTNYLSACSFTNS-DMQILTASGDGTCALWDVESGQLLQS  191 (354)
T ss_dssp             ECCCCTTCC---------------------SGGGCEEEEECSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEecccccc---------------------ccccceeeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCeEEEE
Confidence            986432111                     11222345579999999999999 67999999999999999999999999


Q ss_pred             ecccccceeeEEEcCCC-CcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcc
Q 018293          161 LEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR  239 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~  239 (358)
                      +.+|...|.+++|+|+. +.+|++++.||.|++||+++++.......|...|.+++|+|+ +.++++++.|+.|++||++
T Consensus       192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~v~lwd~~  270 (354)
T 2pbi_B          192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS-GDAFASGSDDATCRLYDLR  270 (354)
T ss_dssp             EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETT
T ss_pred             EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEECC
Confidence            99999999999998852 279999999999999999998877766778999999999995 4699999999999999998


Q ss_pred             cCCCCCCCCCCCccEEEeec--CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293          240 TAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS  317 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  317 (358)
                      ..         .....+..+  ...+.+++|+|++ .+|++|+.|+.|++||+.+++  .+..+.+|...|++++|+|++
T Consensus       271 ~~---------~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~--~~~~l~~h~~~v~~l~~spdg  338 (354)
T 2pbi_B          271 AD---------REVAIYSKESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGS--RVSILFGHENRVSTLRVSPDG  338 (354)
T ss_dssp             TT---------EEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCS--EEEEECCCSSCEEEEEECTTS
T ss_pred             CC---------cEEEEEcCCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCc--eEEEEECCCCcEEEEEECCCC
Confidence            76         334444332  3478999999998 899999999999999998887  466778999999999999999


Q ss_pred             CeEEEEEccCCeEEEEE
Q 018293          318 PFVLAIGGSKGKLEIWD  334 (358)
Q Consensus       318 ~~~l~~~~~dg~i~vw~  334 (358)
                      ++ |++|+.||.|++|+
T Consensus       339 ~~-l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          339 TA-FCSGSWDHTLRVWA  354 (354)
T ss_dssp             SC-EEEEETTSEEEEEC
T ss_pred             CE-EEEEcCCCCEEecC
Confidence            95 89999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.9e-44  Score=299.93  Aligned_cols=245  Identities=20%  Similarity=0.303  Sum_probs=213.2

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      +|+|++++|++|+.||.|++||+.++...                           ..+..|...|.+++|+|+ +++|+
T Consensus        20 ~fsp~~~~l~s~~~dg~v~lWd~~~~~~~---------------------------~~~~~~~~~v~~~~~~~~-~~~l~   71 (304)
T 2ynn_A           20 DFHPTEPWVLTTLYSGRVELWNYETQVEV---------------------------RSIQVTETPVRAGKFIAR-KNWII   71 (304)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEE---------------------------EEEECCSSCEEEEEEEGG-GTEEE
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCcee---------------------------EEeeccCCcEEEEEEeCC-CCEEE
Confidence            44999999999999999999999754332                           244568999999999999 67999


Q ss_pred             EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-cceeeecCCeeeEEEcC
Q 018293          140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDP  218 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~  218 (358)
                      +|+.|++|++||+++++++..+.+|...|.+++|+|++ .++++++.|++|++||++++... .....|...|.+++|+|
T Consensus        72 s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p  150 (304)
T 2ynn_A           72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP  150 (304)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECT
T ss_pred             EECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECC
Confidence            99999999999999999999999999999999999999 89999999999999999877443 33556889999999999


Q ss_pred             CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecC--CCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      .++..+++|+.|+.|++||++..         .....+ ..|...+..+.|+|  ++ .+|++|+.|+.|++||+++++ 
T Consensus       151 ~~~~~l~sgs~D~~v~iwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~~~-  219 (304)
T 2ynn_A          151 KDPSTFASGCLDRTVKVWSLGQS---------TPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKS-  219 (304)
T ss_dssp             TCTTEEEEEETTSEEEEEETTCS---------SCSEEEECCCTTCEEEEEECCSTTC-CEEEEEETTSEEEEEETTTTE-
T ss_pred             CCCCEEEEEeCCCeEEEEECCCC---------CccceeccCCcCcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCCCCc-
Confidence            77789999999999999999876         334444 45667899999987  44 799999999999999999887 


Q ss_pred             eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293          296 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       296 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                       ++..+.+|...|.+++|+|+++ +|++|+.||.|++||+.+++.+..+-.
T Consensus       220 -~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~  268 (304)
T 2ynn_A          220 -CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNV  268 (304)
T ss_dssp             -EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             -cceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeeccC
Confidence             6777889999999999999999 599999999999999999887765443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5e-44  Score=302.58  Aligned_cols=301  Identities=22%  Similarity=0.340  Sum_probs=226.4

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      |+|+|++++|+++..++     .+.+|+...+....... ........+.+++|       +|++++|++|+.|+.|++|
T Consensus        22 l~~sp~g~~las~~~D~-----~i~iw~~~~~~~~~~~~-~~~~h~~~v~~~~~-------sp~g~~l~s~s~D~~v~iw   88 (345)
T 3fm0_A           22 LAWNPAGTLLASCGGDR-----RIRIWGTEGDSWICKSV-LSEGHQRTVRKVAW-------SPCGNYLASASFDATTCIW   88 (345)
T ss_dssp             EEECTTSSCEEEEETTS-----CEEEEEEETTEEEEEEE-ECSSCSSCEEEEEE-------CTTSSEEEEEETTSCEEEE
T ss_pred             EEECCCCCEEEEEcCCC-----eEEEEEcCCCcceeeee-eccccCCcEEEEEE-------CCCCCEEEEEECCCcEEEE
Confidence            47999999999997776     66667665431000000 00112233345555       8999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC---ce
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---KC  157 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~  157 (358)
                      ++....                         ......+.+|...|.+++|+|+ +++|++|+.|++|++||+.++   ++
T Consensus        89 ~~~~~~-------------------------~~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~  142 (345)
T 3fm0_A           89 KKNQDD-------------------------FECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYEC  142 (345)
T ss_dssp             EECCC--------------------------EEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECTTSCEEE
T ss_pred             EccCCC-------------------------eEEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEEEEECCCCCCeEE
Confidence            986422                         1223456789999999999999 679999999999999999876   34


Q ss_pred             eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc--cceeeecCCeeeEEEcCCCCCeEEEEecCCeEEE
Q 018293          158 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS--GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG  235 (358)
Q Consensus       158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i  235 (358)
                      +..+.+|...|.+++|+|++ .+|++++.|+.|++||.+..+..  .....|...|.+++|+|+ +.+|++++.|+.|++
T Consensus       143 ~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~l~s~s~D~~v~i  220 (345)
T 3fm0_A          143 VSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS-GQRLASCSDDRTVRI  220 (345)
T ss_dssp             EEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEE
T ss_pred             EEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC-CCEEEEEeCCCeEEE
Confidence            56778899999999999999 89999999999999999876432  335568899999999995 569999999999999


Q ss_pred             EEcccCCCCCCCC------CCCccEEEee-cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc-------eeeEec
Q 018293          236 FDIRTAKSDPDST------SQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-------SCIASR  301 (358)
Q Consensus       236 ~d~~~~~~~~~~~------~~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~  301 (358)
                      ||...........      ....+..+.+ |...|.+++|+|++ ..|++++.|+.|++|+......       ......
T Consensus       221 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  299 (345)
T 3fm0_A          221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH  299 (345)
T ss_dssp             EEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET
T ss_pred             eccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec
Confidence            9986543211100      0112233433 78899999999998 7899999999999999876431       112234


Q ss_pred             CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       302 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      .+|...|++++|+|++..+||+|+.||.|++|++.+++.+.+
T Consensus       300 ~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          300 QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             TSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred             ccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence            689999999999999865799999999999999998776543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3e-43  Score=294.48  Aligned_cols=260  Identities=21%  Similarity=0.328  Sum_probs=222.9

Q ss_pred             cCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCccc
Q 018293           45 IPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS  124 (358)
Q Consensus        45 ~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  124 (358)
                      ....+.+++|.+.   -.+++++|++|+.|++|+||++....                         ......+.+|...
T Consensus        31 H~~~V~~v~~~~~---~~~~~~~l~tgs~D~~v~vW~~~~~~-------------------------~~~~~~l~gh~~~   82 (321)
T 3ow8_A           31 HDDAIWSVAWGTN---KKENSETVVTGSLDDLVKVWKWRDER-------------------------LDLQWSLEGHQLG   82 (321)
T ss_dssp             SSSCEEEEEEC----------CEEEEEETTSCEEEEEEETTE-------------------------EEEEEEECCCSSC
T ss_pred             CCCcEEEEEEecC---CCCCCCEEEEEcCCCCEEEEECCCCC-------------------------eeeeeeeccCCCC
Confidence            3445567777321   12357899999999999999986422                         1223346689999


Q ss_pred             EEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce
Q 018293          125 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  204 (358)
Q Consensus       125 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  204 (358)
                      |.+++|+++ +.++++++.|++|++||+++++.+..+..+...+.+++|+|++ ++|++++.||.+++||+++++.....
T Consensus        83 v~~~~~~~~-~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~  160 (321)
T 3ow8_A           83 VVSVDISHT-LPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSL  160 (321)
T ss_dssp             EEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEE
T ss_pred             EEEEEECCC-CCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEe
Confidence            999999999 6799999999999999999999999999899999999999999 89999999999999999988776666


Q ss_pred             eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc
Q 018293          205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  284 (358)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  284 (358)
                      ..+...+.+++|+|+ +.++++|+.||.|++||++++         +.+..+.+|..+|.+++|+|++ .+|++|+.|+.
T Consensus       161 ~~~~~~v~~~~~spd-g~~lasg~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~spd~-~~l~s~s~dg~  229 (321)
T 3ow8_A          161 DTRGKFILSIAYSPD-GKYLASGAIDGIINIFDIATG---------KLLHTLEGHAMPIRSLTFSPDS-QLLVTASDDGY  229 (321)
T ss_dssp             ECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCCCEEEECTTS-CEEEEECTTSC
T ss_pred             cCCCceEEEEEECCC-CCEEEEEcCCCeEEEEECCCC---------cEEEEEcccCCceeEEEEcCCC-CEEEEEcCCCe
Confidence            677788999999995 569999999999999999987         7788889999999999999998 89999999999


Q ss_pred             EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293          285 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       285 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                      |++||+++.+  ....+.+|...|.+++|+|+++ .|++++.||.|++||+.+++++..+..+.
T Consensus       230 i~iwd~~~~~--~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~h~  290 (321)
T 3ow8_A          230 IKIYDVQHAN--LAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRTCVHTFFDHQ  290 (321)
T ss_dssp             EEEEETTTCC--EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             EEEEECCCcc--eeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCEEEEEEcCCC
Confidence            9999999887  5667889999999999999999 48999999999999999998887765553

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4e-43  Score=303.80  Aligned_cols=248  Identities=23%  Similarity=0.320  Sum_probs=221.6

Q ss_pred             ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      ++|+|++++|++|+.||.|+|||+.+++..                           ..+.+|...|.+++|+|+ +.+|
T Consensus       114 ~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~---------------------------~~l~~h~~~V~~v~~~~~-~~~l  165 (410)
T 1vyh_C          114 VIFHPVFSVMVSASEDATIKVWDYETGDFE---------------------------RTLKGHTDSVQDISFDHS-GKLL  165 (410)
T ss_dssp             EEECSSSSEEEEEESSSCEEEEETTTCCCC---------------------------EEECCCSSCEEEEEECTT-SSEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcEE---------------------------EEEeccCCcEEEEEEcCC-CCEE
Confidence            345899999999999999999999764432                           345689999999999999 6799


Q ss_pred             EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293          139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  218 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  218 (358)
                      ++|+.|++|++||+.+++++..+.+|...|.+++|+|++ .++++++.|+.|++||++++........|...+.++.++|
T Consensus       166 ~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~  244 (410)
T 1vyh_C          166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ  244 (410)
T ss_dssp             EEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred             EEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC
Confidence            999999999999999999999999999999999999998 8999999999999999999887777778889999999999


Q ss_pred             CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC-------------------CcEEEEE
Q 018293          219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV-------------------PNLLATG  279 (358)
Q Consensus       219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-------------------~~~l~~~  279 (358)
                      + +.++++|+.|+.|++||+++.         .....+..|...|.+++|+|++                   +.+|++|
T Consensus       245 ~-g~~l~s~s~D~~v~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg  314 (410)
T 1vyh_C          245 D-GTLIASCSNDQTVRVWVVATK---------ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  314 (410)
T ss_dssp             T-SSEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             C-CCEEEEEcCCCeEEEEECCCC---------ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence            5 569999999999999999887         6777889999999999999962                   2689999


Q ss_pred             eCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293          280 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       280 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                      +.|+.|++||+++++  ++..+.+|...|.+++|+|++++ |++|+.||.|++||+.+++.+..+..|.
T Consensus       315 s~D~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~D~~i~vwd~~~~~~~~~~~~h~  380 (410)
T 1vyh_C          315 SRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNKRCMKTLNAHE  380 (410)
T ss_dssp             ETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEEECCTTSCCCEEEECCS
T ss_pred             eCCCeEEEEECCCCc--eEEEEECCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCceEEEEcCCC
Confidence            999999999999887  56677889999999999999995 8899999999999999988877655443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1e-42  Score=299.88  Aligned_cols=291  Identities=22%  Similarity=0.326  Sum_probs=224.0

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeec--------------CCcccceeeecCCccccCCCc
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIII--------------PAFPLCMAWLDCPLKDREKGN   66 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~s~~~~   66 (358)
                      ++|+|+|++|+++. ++     .+.+|+...+.....+..+....              ...+.+       ++|+|+|+
T Consensus        70 v~fspdg~~la~g~-~~-----~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~-------v~~s~dg~  136 (393)
T 1erj_A           70 VKFSNDGEYLATGC-NK-----TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS-------VCFSPDGK  136 (393)
T ss_dssp             EEECTTSSEEEEEC-BS-----CEEEEETTTCCEEEEECC-----------------CCCCBEEE-------EEECTTSS
T ss_pred             EEECCCCCEEEEEc-CC-----cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEE-------EEECCCCC
Confidence            46899999999985 43     56677766542222221111100              001223       45599999


Q ss_pred             eEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCe
Q 018293           67 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  146 (358)
Q Consensus        67 ~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~  146 (358)
                      +|++|+.||.|+|||+.+++                           ....+.+|...|.+++|+|+ +.+|++|+.|++
T Consensus       137 ~l~s~~~d~~i~iwd~~~~~---------------------------~~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~  188 (393)
T 1erj_A          137 FLATGAEDRLIRIWDIENRK---------------------------IVMILQGHEQDIYSLDYFPS-GDKLVSGSGDRT  188 (393)
T ss_dssp             EEEEEETTSCEEEEETTTTE---------------------------EEEEECCCSSCEEEEEECTT-SSEEEEEETTSE
T ss_pred             EEEEEcCCCeEEEEECCCCc---------------------------EEEEEccCCCCEEEEEEcCC-CCEEEEecCCCc
Confidence            99999999999999997533                           22345689999999999999 679999999999


Q ss_pred             EEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce-------eeecCCeeeEEEcCC
Q 018293          147 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-------WAVAADVESLAWDPH  219 (358)
Q Consensus       147 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~~~~  219 (358)
                      |++||++++++...+. +...+.+++|+|..+.++++++.|+.|++||++++......       ..|...|.+++|+|+
T Consensus       189 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~  267 (393)
T 1erj_A          189 VRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD  267 (393)
T ss_dssp             EEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred             EEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC
Confidence            9999999998887776 56789999999943389999999999999999887654322       357788999999995


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCC---CCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPD---STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  296 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  296 (358)
                       +.++++++.||.|++||++.......   .........+.+|...|.+++|+|++ .+|++|+.|+.|++||+++++  
T Consensus       268 -g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~~~--  343 (393)
T 1erj_A          268 -GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGN--  343 (393)
T ss_dssp             -SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCC--
T ss_pred             -CCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCe--
Confidence             56899999999999999987532111   01123456778899999999999998 899999999999999999988  


Q ss_pred             eeEecCCCCceeEEEEEcC------CCCeEEEEEccCCeEEEEEccCC
Q 018293          297 CIASRNPKAGAVFSVAFSE------DSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       297 ~~~~~~~~~~~v~~~~~~~------~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      .+..+.+|...|.+++|++      ++. +|++|+.||.|++|++...
T Consensus       344 ~~~~l~~h~~~v~~v~~~~~~~~~p~~~-~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          344 PLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEEEC
T ss_pred             EEEEECCCCCCEEEEEecCCcCcCCCCC-EEEEECCCCcEEECccccc
Confidence            4566778999999999986      566 6999999999999998653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.3e-42  Score=315.61  Aligned_cols=285  Identities=20%  Similarity=0.317  Sum_probs=231.5

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|+|+|+.|+++. .+     .+.+|+...+.....+..|...    +.++       +|+|+|++||+|+.||+|+||
T Consensus        24 ~~~spdg~~l~~~~-~~-----~v~l~~~~~~~~~~~~~~h~~~----v~~~-------~~spdg~~lasg~~d~~v~lW   86 (611)
T 1nr0_A           24 LGNTPAGDKIQYCN-GT-----SVYTVPVGSLTDTEIYTEHSHQ----TTVA-------KTSPSGYYCASGDVHGNVRIW   86 (611)
T ss_dssp             CEECTTSSEEEEEE-TT-----EEEEEETTCSSCCEEECCCSSC----EEEE-------EECTTSSEEEEEETTSEEEEE
T ss_pred             EeeCCCCCEEEeCC-CC-----EEEEecCCCcccCeEecCCCCc----eEEE-------EECCCCcEEEEEeCCCCEEEe
Confidence            57999999999985 44     7888888765555555555322    2344       459999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC----CeEEEEECCCCc
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD----KQVKIWDVAAGK  156 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----g~v~iwd~~~~~  156 (358)
                      |+.+.+..                         ....+.+|.+.|.+++|+|+ +.+|++++.+    +.|++||  .++
T Consensus        87 d~~~~~~~-------------------------~~~~~~~~~~~v~~v~fs~d-g~~l~~~~~~~~~~~~v~~wd--~~~  138 (611)
T 1nr0_A           87 DTTQTTHI-------------------------LKTTIPVFSGPVKDISWDSE-SKRIAAVGEGRERFGHVFLFD--TGT  138 (611)
T ss_dssp             ESSSTTCC-------------------------EEEEEECSSSCEEEEEECTT-SCEEEEEECCSSCSEEEEETT--TCC
T ss_pred             ECCCCcce-------------------------eeEeecccCCceEEEEECCC-CCEEEEEECCCCceeEEEEee--CCC
Confidence            98643221                         12244579999999999999 5688887765    4677777  566


Q ss_pred             eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEE
Q 018293          157 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF  236 (358)
Q Consensus       157 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~  236 (358)
                      ....+.+|...|.+++|+|+++..|++++.|++|++||....+.......|...|.+++|+|+ +.++++++.|+.|++|
T Consensus       139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd-g~~las~s~D~~i~lw  217 (611)
T 1nr0_A          139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLY  217 (611)
T ss_dssp             BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEE
T ss_pred             CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCC-CCEEEEEECCCcEEEE
Confidence            778889999999999999998557999999999999998877666666778999999999996 5599999999999999


Q ss_pred             EcccCCCCCCCCCCCccEEEe-------ecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCcee------------
Q 018293          237 DIRTAKSDPDSTSQQSSFTLH-------AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC------------  297 (358)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------------  297 (358)
                      |+.++         .....+.       +|...|.+++|+|++ .+|++++.|++|++||+++++...            
T Consensus       218 d~~~g---------~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~  287 (611)
T 1nr0_A          218 NGVDG---------TKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ  287 (611)
T ss_dssp             ETTTC---------CEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCE
T ss_pred             ECCCC---------cEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCcccee
Confidence            99876         4444442       799999999999998 899999999999999998765321            


Q ss_pred             -----------------------------eEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          298 -----------------------------IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       298 -----------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                                                   ...+.+|...|.+++|+|+|+ .|++++.|+.|++||+.+++...
T Consensus       288 ~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~  360 (611)
T 1nr0_A          288 LGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNR  360 (611)
T ss_dssp             EEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE
T ss_pred             EEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceee
Confidence                                         223457899999999999999 58999999999999999876543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-42  Score=289.84  Aligned_cols=296  Identities=18%  Similarity=0.301  Sum_probs=210.5

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      +|+|+  +|+++..++     .+.+|+...+....+...........+.++.|       +|++++|++|+.|+.|+|||
T Consensus        21 ~~s~~--~las~~~D~-----~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~-------sp~~~~las~s~D~~v~iw~   86 (330)
T 2hes_X           21 DFSQG--ILATGSTDR-----KIKLVSVKYDDFTLIDVLDETAHKKAIRSVAW-------RPHTSLLAAGSFDSTVSIWA   86 (330)
T ss_dssp             EEETT--EEEEEESSS-----CEEEEECSSSCCEEEEEECTTCCCSCEEEEEE-------CTTSSEEEEEETTSCEEEEE
T ss_pred             ccCCC--EEEEEcCCC-----EEEEEEecCCCeEEEEEEecCCccCCEEEEEE-------CCCCCEEEEEeCCCcEEEEE
Confidence            56666  888887776     67777765431111111100002223345555       89999999999999999999


Q ss_pred             cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC----Cce
Q 018293           82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA----GKC  157 (358)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~----~~~  157 (358)
                      +.......                    ........+.+|...|.+++|+|+ +++|++|+.|++|++||+..    .++
T Consensus        87 ~~~~~~~~--------------------~~~~~~~~~~~h~~~V~~v~~sp~-g~~las~s~D~~v~iwd~~~~~~~~~~  145 (330)
T 2hes_X           87 KEESADRT--------------------FEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDKSVWIWETDESGEEYEC  145 (330)
T ss_dssp             C---------------------------CCCEEEEEEC----CEEEEEECTT-SCEEEEEETTSCEEEEECCTTCCCCEE
T ss_pred             cccCcCcc--------------------ccceeEEEEcCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEeccCCCCCeEE
Confidence            86321100                    012234456789999999999999 67999999999999999943    256


Q ss_pred             eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC--CCccceeeecCCeeeEEEcCCC-CCeEEEEecCCeEE
Q 018293          158 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGFKWAVAADVESLAWDPHA-EHSFVVSLEDGTIK  234 (358)
Q Consensus       158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~dg~i~  234 (358)
                      +..+.+|...|.+++|+|++ .+|++++.|++|++||....  +.......|...|.+++|+|++ ...+++++.|+.|+
T Consensus       146 ~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~  224 (330)
T 2hes_X          146 ISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVR  224 (330)
T ss_dssp             EEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEE
T ss_pred             EEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEE
Confidence            77888999999999999998 89999999999999998765  3444456788999999999963 45799999999999


Q ss_pred             EEEcccCCCCCCCCCCCccEEEee-cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceee-EecCCCCc-eeEEE
Q 018293          235 GFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI-ASRNPKAG-AVFSV  311 (358)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~-~v~~~  311 (358)
                      +||++....... ........+.. |...|.+++|+++  .+|++++.||.|++||..+++.... .....|.. .|.++
T Consensus       225 iw~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~v~~s~~--~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v  301 (330)
T 2hes_X          225 VWKYMGDDEDDQ-QEWVCEAILPDVHKRQVYNVAWGFN--GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVV  301 (330)
T ss_dssp             EEEEEEECTTSC-EEEEEEEECCSCCSSCEEEEEECTT--SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEE
T ss_pred             EEEecCCCcccc-ceeEEeeecccccccceEEEEEcCC--CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEE
Confidence            999986521100 00012223333 8899999999975  4799999999999999987642223 23456776 89999


Q ss_pred             EEcC--CCCeEEEEEccCCeEEEEEccC
Q 018293          312 AFSE--DSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       312 ~~~~--~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      +|+|  +++ +|++|+.||.|++|++.+
T Consensus       302 ~~~~~~~~~-~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          302 KWLELNGKT-ILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEC-----C-CEEEEETTSEEEEEEC--
T ss_pred             EEecCCCce-EEEEecCCCcEEEEEecc
Confidence            9999  677 599999999999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4e-43  Score=295.91  Aligned_cols=253  Identities=21%  Similarity=0.237  Sum_probs=203.1

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      +++|+|||++|++++ |+++++||........+.                .............|...|.+++|+|+ + .
T Consensus        35 ~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~v~~~~~s~d-~-~   95 (344)
T 4gqb_B           35 AARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPC----------------AAPNEGFCSAGVQTEAGVADLTWVGE-R-G   95 (344)
T ss_dssp             EEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGG----------------GTTCGGGCSEEEEESSCEEEEEEETT-T-E
T ss_pred             EEEECCCCCEEEEEe-CCceEEeeceeeeecccc----------------ccCCcceeeeeeccCCCEEEEEEeCC-C-e
Confidence            456799999999887 778888875321100000                00011111122346678999999998 4 6


Q ss_pred             EEEEEcCCeEEEEECCCCceeeee----cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeee
Q 018293          138 LASASADKQVKIWDVAAGKCNLTL----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVES  213 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  213 (358)
                      |++|+.||+|++||+++++.+..+    .+|...|++++|+|++ ++|++++.|++|++||+++++.......|...|.+
T Consensus        96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~  174 (344)
T 4gqb_B           96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC  174 (344)
T ss_dssp             EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence            889999999999999998765443    4799999999999999 89999999999999999998888777789999999


Q ss_pred             EEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE--eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecC
Q 018293          214 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL--HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  291 (358)
Q Consensus       214 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~  291 (358)
                      ++|+|++..++++++.|+.|++||++++         +....+  ..|...+.+++|+|++.++|++|+.||.|++||++
T Consensus       175 ~~~~~~~~~~l~s~s~D~~v~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~  245 (344)
T 4gqb_B          175 VAASPHKDSVFLSCSEDNRILLWDTRCP---------KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK  245 (344)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTSS---------SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred             EEecCCCCCceeeecccccccccccccc---------ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence            9999988788999999999999999987         444444  34566789999999877899999999999999999


Q ss_pred             CCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          292 NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       292 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      +++  ++..+.+|...|++++|+|++..+|++|+.||+|+|||+.+++.+
T Consensus       246 ~~~--~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~  293 (344)
T 4gqb_B          246 STS--CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF  293 (344)
T ss_dssp             C----CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE
T ss_pred             CCc--EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE
Confidence            988  466778899999999999998656999999999999999988754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.1e-41  Score=284.65  Aligned_cols=278  Identities=21%  Similarity=0.357  Sum_probs=226.5

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|+|+++.|+++..++     .+.+|+...+.....+..|    ...+.++.|       +|++++|++|+.||.|++|
T Consensus        29 ~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~h----~~~v~~~~~-------~~~~~~l~s~~~d~~i~vw   92 (312)
T 4ery_A           29 VKFSPNGEWLASSSADK-----LIKIWGAYDGKFEKTISGH----KLGISDVAW-------SSDSNLLVSASDDKTLKIW   92 (312)
T ss_dssp             EEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEECCC----SSCEEEEEE-------CTTSSEEEEEETTSEEEEE
T ss_pred             EEECCCCCEEEEeeCCC-----eEEEEeCCCcccchhhccC----CCceEEEEE-------cCCCCEEEEECCCCEEEEE
Confidence            46899999999998776     7788887665322222222    222345555       8999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      |+.+++..                           ..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+++++.+..
T Consensus        93 d~~~~~~~---------------------------~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~  144 (312)
T 4ery_A           93 DVSSGKCL---------------------------KTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKT  144 (312)
T ss_dssp             ETTTCCEE---------------------------EEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             ECCCCcEE---------------------------EEEcCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCEEEEE
Confidence            99754332                           244579999999999999 67999999999999999999999999


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR  239 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~  239 (358)
                      +..|..+|.+++|+|++ .++++++.||.|++||+++++...... .+...+..++|+|+ +.++++++.||.|++||++
T Consensus       145 ~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~  222 (312)
T 4ery_A          145 LPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS  222 (312)
T ss_dssp             ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTT-SSEEEEEETTTEEEEEETT
T ss_pred             ecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCC-CCEEEEEcCCCeEEEEECC
Confidence            99999999999999998 899999999999999999876554332 34567899999995 4589999999999999999


Q ss_pred             cCCCCCCCCCCCccEEEeecCCceeE--EEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293          240 TAKSDPDSTSQQSSFTLHAHDKAVCT--ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS  317 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~i~~--i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  317 (358)
                      ++         .....+.+|.....+  ..+++.++.+|++|+.||.|++||+++++  .+..+.+|...|.+++|+|++
T Consensus       223 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~p~~  291 (312)
T 4ery_A          223 KG---------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVVISTACHPTE  291 (312)
T ss_dssp             TT---------EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC--EEEEECCCSSCEEEEEECSSS
T ss_pred             CC---------cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch--hhhhhhccCCcEEEEeecCcC
Confidence            87         667777777654332  34444344899999999999999999887  567788999999999999999


Q ss_pred             CeEEEEEc--cCCeEEEEEcc
Q 018293          318 PFVLAIGG--SKGKLEIWDTL  336 (358)
Q Consensus       318 ~~~l~~~~--~dg~i~vw~~~  336 (358)
                      + ++++++  .|+.|++|+..
T Consensus       292 ~-~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          292 N-IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             S-EEEEEECTTTCCEEEEECC
T ss_pred             C-ceEEEEccCCccEEEecCC
Confidence            9 477775  69999999864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.4e-41  Score=282.97  Aligned_cols=277  Identities=17%  Similarity=0.301  Sum_probs=217.7

Q ss_pred             CcccCCC-cEEEEEEecCCCceEEEEEEeccCCCCC-----ceEeeceeecCCcccceeeecCCccccCCCceEEecCCC
Q 018293            1 MTINPND-AVIVCARNEDDVSHLEVYILEESDGGDP-----NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME   74 (358)
Q Consensus         1 l~~~p~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d   74 (358)
                      |+|+|++ ++|+++..++     .+.+|+.......     ..+..|    ...+.++.       |+|++++|++|+.|
T Consensus        23 l~~~~~~~~~l~s~s~D~-----~v~~W~~~~~~~~~~~~~~~~~~h----~~~v~~~~-------~s~dg~~l~s~s~D   86 (319)
T 3frx_A           23 LATSAGQPNLLLSASRDK-----TLISWKLTGDDQKFGVPVRSFKGH----SHIVQDCT-------LTADGAYALSASWD   86 (319)
T ss_dssp             EEECSSCTTEEEEEETTS-----EEEEEEEEEETTEEEEEEEEEECC----SSCEEEEE-------ECTTSSEEEEEETT
T ss_pred             EEccCCCccEEEEecCCc-----cEEEecCCCCCccccccceEEeCC----cccEEEEE-------ECCCCCEEEEEeCC
Confidence            4688865 7888887665     5666655432110     111222    22333444       48999999999999


Q ss_pred             CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC
Q 018293           75 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA  154 (358)
Q Consensus        75 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~  154 (358)
                      ++|++||+.+++..                           ..+.+|...|.+++|+|+ +.+|++|+.|++|++||++ 
T Consensus        87 ~~v~~wd~~~~~~~---------------------------~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~vwd~~-  137 (319)
T 3frx_A           87 KTLRLWDVATGETY---------------------------QRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIK-  137 (319)
T ss_dssp             SEEEEEETTTTEEE---------------------------EEEECCSSCEEEEEECTT-SCEEEEEETTSCEEEEETT-
T ss_pred             CEEEEEECCCCCee---------------------------EEEccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECC-
Confidence            99999999764432                           245579999999999999 6799999999999999986 


Q ss_pred             CceeeeecccccceeeEEEcCCC-----CcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEec
Q 018293          155 GKCNLTLEHHTDKVQAVAWNHHS-----PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE  229 (358)
Q Consensus       155 ~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  229 (358)
                      ++++..+.+|...|.++.|.|..     ...+++++.|+.|++||+++.+.......|...|.+++|+|+ +.++++++.
T Consensus       138 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~  216 (319)
T 3frx_A          138 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD-GTLIASAGK  216 (319)
T ss_dssp             SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTT-SSEEEEEET
T ss_pred             CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCC-CCEEEEEeC
Confidence            56778888999999999999853     248999999999999999987766666778999999999995 569999999


Q ss_pred             CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC-------
Q 018293          230 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-------  302 (358)
Q Consensus       230 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------  302 (358)
                      ||.|++||+++.         +.+..+.. ...|.+++|+|++ .+|++++. +.+++|++.....  ...+.       
T Consensus       217 dg~i~iwd~~~~---------~~~~~~~~-~~~v~~~~~sp~~-~~la~~~~-~~i~v~~~~~~~~--~~~~~~~~~~~~  282 (319)
T 3frx_A          217 DGEIMLWNLAAK---------KAMYTLSA-QDEVFSLAFSPNR-YWLAAATA-TGIKVFSLDPQYL--VDDLRPEFAGYS  282 (319)
T ss_dssp             TCEEEEEETTTT---------EEEEEEEC-CSCEEEEEECSSS-SEEEEEET-TEEEEEEETTEEE--EEEECCCCTTCC
T ss_pred             CCeEEEEECCCC---------cEEEEecC-CCcEEEEEEcCCC-CEEEEEcC-CCcEEEEeCcCee--eeccCccccccc
Confidence            999999999986         56666654 4679999999998 78888775 4599999987652  22221       


Q ss_pred             -CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          303 -PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       303 -~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                       .|...+.+++|+|+|++ |++|+.||.|++||+.++
T Consensus       283 ~~~~~~v~~~~~spdg~~-l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          283 KAAEPHAVSLAWSADGQT-LFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             GGGCCCEEEEEECTTSSE-EEEEETTSCEEEEEEEEC
T ss_pred             cCcCcceeEEEECCCCCE-EEEeecCceEEEEEEeec
Confidence             23567899999999995 889999999999999764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9.1e-43  Score=295.94  Aligned_cols=250  Identities=20%  Similarity=0.216  Sum_probs=201.1

Q ss_pred             CccccCCCceEEecCC------CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecC
Q 018293           58 PLKDREKGNFMAVGSM------EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN  131 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  131 (358)
                      +++|||||++||+|+.      |+.|++|+..++....                       .......+|...|.+++|+
T Consensus        47 ~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~-----------------------~~~~~~~~~~~~V~~~~~s  103 (357)
T 4g56_B           47 AVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE-----------------------SLCTAGVQTEAGVTDVAWV  103 (357)
T ss_dssp             EEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG-----------------------GGCSEEEECSSCEEEEEEE
T ss_pred             EEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce-----------------------eEecccCCCCCCEEEEEEc
Confidence            3456999999999997      6788999876543222                       1222334688999999999


Q ss_pred             CCCCcEEEEEEcCCeEEEEECCCCceee----eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee
Q 018293          132 KEFRNILASASADKQVKIWDVAAGKCNL----TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV  207 (358)
Q Consensus       132 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  207 (358)
                      |+ + .+++++.||+|++||+.+++...    ...+|...|++++|+|++ ++|++++.|+.|++||+++++.......|
T Consensus       104 ~d-~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~~~h  180 (357)
T 4g56_B          104 SE-K-GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSYNAH  180 (357)
T ss_dssp             TT-T-EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             CC-C-CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence            98 4 46678899999999999886543    234789999999999999 89999999999999999998877767778


Q ss_pred             cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEE
Q 018293          208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL  287 (358)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i  287 (358)
                      ...|.+++|+|++..++++++.||.|++||+++++.       ........|...+.+++|+|+++.+|++|+.|+.|++
T Consensus       181 ~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~-------~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~  253 (357)
T 4g56_B          181 SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP-------ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL  253 (357)
T ss_dssp             SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC-------BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred             CCCEEEEEEccCCCceeeeeccCCceEEEECCCCce-------eeeeeeccccccccchhhhhcccceEEEeecccceeE
Confidence            999999999998877899999999999999998732       2222334567789999999987789999999999999


Q ss_pred             EecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          288 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       288 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      ||+++++  ....+..|...|++++|+|++..+|++|+.||+|+|||+.+++.+.
T Consensus       254 wd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~  306 (357)
T 4g56_B          254 VNIKNPD--SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR  306 (357)
T ss_dssp             EESSCGG--GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE
T ss_pred             EECCCCc--EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE
Confidence            9999887  4667788999999999999986569999999999999999887654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.3e-40  Score=281.53  Aligned_cols=281  Identities=18%  Similarity=0.273  Sum_probs=210.7

Q ss_pred             cC-CCcEEEEEEecCCCceEEEEEEeccCCCCCceE---eeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293            4 NP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLY---VHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI   79 (358)
Q Consensus         4 ~p-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v   79 (358)
                      +| ++++|++|..++     .+.+|+.........+   ...-......+.++.|       +|++.+|++|+.|++|++
T Consensus        35 ~~~d~~~l~sgs~D~-----~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~-------~~~~~~l~s~s~D~~v~l  102 (343)
T 2xzm_R           35 ENEDSPVLISGSRDK-----TVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL-------SQENCFAISSSWDKTLRL  102 (343)
T ss_dssp             TTCCCCEEEEEETTS-----CEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEE-------CSSTTEEEEEETTSEEEE
T ss_pred             cCCCCCEEEEEcCCC-----EEEEEECCcCCcccccccccchhccCCCceEEEEE-------CCCCCEEEEEcCCCcEEE
Confidence            55 889999997775     5666665432211110   0000111223345544       899999999999999999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  159 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  159 (358)
                      ||+.+++..                           ..+.+|...|.+++|+|+ +.+|++++.|++|++||+... ...
T Consensus       103 wd~~~~~~~---------------------------~~~~~h~~~v~~v~~sp~-~~~l~s~~~d~~i~~wd~~~~-~~~  153 (343)
T 2xzm_R          103 WDLRTGTTY---------------------------KRFVGHQSEVYSVAFSPD-NRQILSAGAEREIKLWNILGE-CKF  153 (343)
T ss_dssp             EETTSSCEE---------------------------EEEECCCSCEEEEEECSS-TTEEEEEETTSCEEEEESSSC-EEE
T ss_pred             EECCCCcEE---------------------------EEEcCCCCcEEEEEECCC-CCEEEEEcCCCEEEEEeccCC-cee
Confidence            999754332                           245579999999999999 679999999999999999743 333


Q ss_pred             ee---cccccceeeEEEcCCCC---------cEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEE
Q 018293          160 TL---EHHTDKVQAVAWNHHSP---------QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS  227 (358)
Q Consensus       160 ~~---~~~~~~v~~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  227 (358)
                      ..   ..|...|.+++|+|++.         .++++++.|+.|++||.. .+.......|...|.+++|+|+ +.+|++|
T Consensus       154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~-g~~l~sg  231 (343)
T 2xzm_R          154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPN-GKYIATG  231 (343)
T ss_dssp             ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTT-SSEEEEE
T ss_pred             eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCC-CCEEEEE
Confidence            22   36888999999999862         589999999999999943 3333345578889999999995 5599999


Q ss_pred             ecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC-----
Q 018293          228 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-----  302 (358)
Q Consensus       228 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----  302 (358)
                      +.||.|++||++...        .....+ .+...|.+++|+|++ .+++++ .|+.|++||+.+.+...+..+.     
T Consensus       232 s~dg~v~iwd~~~~~--------~~~~~~-~~~~~v~~v~~sp~~-~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~  300 (343)
T 2xzm_R          232 GKDKKLLIWDILNLT--------YPQREF-DAGSTINQIAFNPKL-QWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPIT  300 (343)
T ss_dssp             ETTCEEEEEESSCCS--------SCSEEE-ECSSCEEEEEECSSS-CEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGG
T ss_pred             cCCCeEEEEECCCCc--------ccceee-cCCCcEEEEEECCCC-CEEEEE-CCCCEEEEEeCCCCCCceEEeecCcch
Confidence            999999999996541        233333 345679999999987 676654 5788999999887654433333     


Q ss_pred             ------CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          303 ------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       303 ------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                            +|...|.+++|+|+|++ |++|+.||.|++|++.+++
T Consensus       301 ~~~~~~~~~~~v~~~~~sp~g~~-l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          301 KAEGQKGKNPQCTSLAWNALGKK-LFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             GBTTBCCSCCCEEEEEECSSSCC-EEEEETTSEEEEEEEEEEE
T ss_pred             hhhhhcCCCCceEEEEECCCCCe-EEEecCCceEEEEEEEccC
Confidence                  67788999999999995 8899999999999997754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.9e-41  Score=278.37  Aligned_cols=246  Identities=24%  Similarity=0.344  Sum_probs=201.5

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC-CCcEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNIL  138 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l  138 (358)
                      +|+|+|++||+|+.|++|+|||+....                         ......+.+|.+.|.+++|+++ .+.+|
T Consensus        16 ~~s~~g~~las~s~D~~v~iw~~~~~~-------------------------~~~~~~l~gH~~~V~~v~~s~~~~g~~l   70 (297)
T 2pm7_B           16 VMDYYGKRMATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHEGPVWRVDWAHPKFGTIL   70 (297)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEBCSSC-------------------------BCCCEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             EECCCCCEEEEEeCCCEEEEEecCCCC-------------------------cEEEEEEccccCCeEEEEecCCCcCCEE
Confidence            448999999999999999999986321                         1233456789999999999864 25799


Q ss_pred             EEEEcCCeEEEEECCCCc--eeeeecccccceeeEEEcCC--CCcEEEEEeCCCcEEEEEcccCCC--ccceeeecCCee
Q 018293          139 ASASADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTH--SGFKWAVAADVE  212 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~  212 (358)
                      ++|+.|++|++||+++++  .+..+..|...|.+++|+|+  + .+|++++.|+.|++||++....  ......|...+.
T Consensus        71 ~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~  149 (297)
T 2pm7_B           71 ASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN  149 (297)
T ss_dssp             EEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEE
T ss_pred             EEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCceeeeeeecccCccc
Confidence            999999999999998874  55677889999999999997  5 7999999999999999987642  233456888999


Q ss_pred             eEEEcCCC------------CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC--CcEEEE
Q 018293          213 SLAWDPHA------------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--PNLLAT  278 (358)
Q Consensus       213 ~~~~~~~~------------~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~l~~  278 (358)
                      +++|+|+.            +.+|++|+.|+.|++||++.....     ......+.+|...|.+++|+|++  +.+|++
T Consensus       150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~-----~~~~~~l~~H~~~V~~v~~sp~~~~~~~las  224 (297)
T 2pm7_B          150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSPTVLLRSYMAS  224 (297)
T ss_dssp             EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred             eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce-----EEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence            99999963            468999999999999999875210     01456788999999999999985  479999


Q ss_pred             EeCCCcEEEEecCCCCce-eeEec--CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          279 GSTDKMVKLWDLSNNQPS-CIASR--NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       279 ~~~dg~i~i~d~~~~~~~-~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ++.|++|++||+++.... ....+  ..|...|.+++|+|++++ |++++.||.|++|+...
T Consensus       225 ~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC-EEEEETTSCEEEEEECT
T ss_pred             EECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCE-EEEEcCCCcEEEEEECC
Confidence            999999999999875321 12222  567889999999999995 89999999999999863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.8e-41  Score=283.81  Aligned_cols=246  Identities=21%  Similarity=0.277  Sum_probs=211.8

Q ss_pred             ccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           61 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        61 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      |+|++++|++|+.||.|+|||+.+++..                           ..+..|...|.+++|+|+ +.+|++
T Consensus        63 ~s~d~~~l~s~s~Dg~v~iWd~~~~~~~---------------------------~~~~~~~~~v~~~~~s~~-~~~l~s  114 (340)
T 1got_B           63 WGTDSRLLLSASQDGKLIIWDSYTTNKV---------------------------HAIPLRSSWVMTCAYAPS-GNYVAC  114 (340)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTCCEE---------------------------EEEECSSSCEEEEEECTT-SSEEEE
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCCcc---------------------------eEeecCCccEEEEEECCC-CCEEEE
Confidence            4899999999999999999998754432                           234468899999999999 679999


Q ss_pred             EEcCCeEEEEECCCC----ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEE
Q 018293          141 ASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW  216 (358)
Q Consensus       141 ~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  216 (358)
                      |+.|+.|++||+.+.    +....+.+|...|.++.|++++  .+++++.|+.|++||+++++.......|...|.+++|
T Consensus       115 ~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~  192 (340)
T 1got_B          115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL  192 (340)
T ss_dssp             EETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             EeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEE
Confidence            999999999999875    3456778899999999999886  4899999999999999988877766778899999999


Q ss_pred             cCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce
Q 018293          217 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  296 (358)
Q Consensus       217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  296 (358)
                      +|+ +.++++|+.||.|++||++++         .....+.+|...|++++|+|++ .+|++|+.||.|++||+++.+..
T Consensus       193 ~~~-~~~l~sg~~d~~v~~wd~~~~---------~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~  261 (340)
T 1got_B          193 APD-TRLFVSGACDASAKLWDVREG---------MCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQEL  261 (340)
T ss_dssp             CTT-SSEEEEEETTSCEEEEETTTC---------SEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCC-CCEEEEEeCCCcEEEEECCCC---------eeEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEE
Confidence            995 569999999999999999987         7778889999999999999998 89999999999999999988754


Q ss_pred             eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293          297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                      .......+...|.+++|+|+++ +|++|+.||.|++||+.+++.+..+.+|.
T Consensus       262 ~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~~~~h~  312 (340)
T 1got_B          262 MTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHD  312 (340)
T ss_dssp             EEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccCcEeeEeecCC
Confidence            4433344556799999999999 58899999999999999888776655443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-40  Score=288.04  Aligned_cols=288  Identities=22%  Similarity=0.336  Sum_probs=229.1

Q ss_pred             ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEc
Q 018293            3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDL   82 (358)
Q Consensus         3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~   82 (358)
                      +.+++..++++..++     .+++|+...+........   .....+.++.|       +|++++|++|+.||.|++||+
T Consensus        99 ~~~s~~~l~~~~~d~-----~v~lw~~~~~~~~~~~~~---~~~~~v~~v~~-------s~~~~~l~~~~~dg~i~iwd~  163 (401)
T 4aez_A           99 LDWSNLNVVAVALER-----NVYVWNADSGSVSALAET---DESTYVASVKW-------SHDGSFLSVGLGNGLVDIYDV  163 (401)
T ss_dssp             EEECTTSEEEEEETT-----EEEEEETTTCCEEEEEEC---CTTCCEEEEEE-------CTTSSEEEEEETTSCEEEEET
T ss_pred             EeecCCCEEEEECCC-----eEEEeeCCCCcEeEeeec---CCCCCEEEEEE-------CCCCCEEEEECCCCeEEEEEC
Confidence            344456677777777     899999877632222221   12344556666       899999999999999999999


Q ss_pred             ccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECC-CCceeeee
Q 018293           83 DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA-AGKCNLTL  161 (358)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~  161 (358)
                      .+++..                           ..+.+|...|.+++|+   +.++++|+.||.|++||++ ....+..+
T Consensus       164 ~~~~~~---------------------------~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~  213 (401)
T 4aez_A          164 ESQTKL---------------------------RTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTL  213 (401)
T ss_dssp             TTCCEE---------------------------EEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             cCCeEE---------------------------EEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEE
Confidence            754322                           2445799999999995   4599999999999999998 55678888


Q ss_pred             cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEe--cCCeEEEEEcc
Q 018293          162 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL--EDGTIKGFDIR  239 (358)
Q Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~dg~i~i~d~~  239 (358)
                      .+|...|.+++|+|++ .++++++.|+.|++||+++.+.......+...|.+++|+|++..++++++  .|+.|++||++
T Consensus       214 ~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~  292 (401)
T 4aez_A          214 QGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA  292 (401)
T ss_dssp             ECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred             cCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence            8999999999999998 89999999999999999988777666678899999999998888888876  79999999999


Q ss_pred             cCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEE--EeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293          240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT--GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS  317 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  317 (358)
                      ++         .....+. +...+.+++|+|++ .++++  |+.||.|++||+.+++......+.+|...|.+++|+|++
T Consensus       293 ~~---------~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg  361 (401)
T 4aez_A          293 TG---------ARVNTVD-AGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDG  361 (401)
T ss_dssp             TC---------CEEEEEE-CSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTS
T ss_pred             CC---------CEEEEEe-CCCcEEEEEECCCC-CeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCC
Confidence            86         5555554 66789999999998 77777  448999999999997766666778899999999999999


Q ss_pred             CeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293          318 PFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       318 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                      + .|++++.||.|++|++.+++.+.+.....
T Consensus       362 ~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  391 (401)
T 4aez_A          362 R-ILSTAASDENLKFWRVYDGDHVKRPIPIT  391 (401)
T ss_dssp             S-EEEEECTTSEEEEEECCC-----------
T ss_pred             C-EEEEEeCCCcEEEEECCCCcccccccccc
Confidence            9 58999999999999999998887655443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-41  Score=295.88  Aligned_cols=292  Identities=16%  Similarity=0.268  Sum_probs=232.8

Q ss_pred             CcccCCCc-EEEEE----------EecCCCceEEEEEEeccCCCC--CceEeeceeecCCcccceeeecCCccccCCCce
Q 018293            1 MTINPNDA-VIVCA----------RNEDDVSHLEVYILEESDGGD--PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF   67 (358)
Q Consensus         1 l~~~p~~~-~l~~~----------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~   67 (358)
                      ++|+|+++ +|+++          ..++     .+++|+...+..  +.....|    ...+.++.|       +|++++
T Consensus        18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~-----~v~iw~~~~~~~~~~~~~~~~----~~~v~~~~~-------s~~~~~   81 (416)
T 2pm9_A           18 FAWSHDKIPLLVSGTVSGTVDANFSTDS-----SLELWSLLAADSEKPIASLQV----DSKFNDLDW-------SHNNKI   81 (416)
T ss_dssp             CCBCSSSSCEEEEBCBSSCCCSSCCCCC-----CCEEEESSSGGGCSCSCCCCC----SSCEEEEEE-------CSSSSC
T ss_pred             EeeCCCCCCEEEEEecCcccccccCCCC-----eEEEEEccCCCCCcEEEEEec----CCceEEEEE-------CCCCCe
Confidence            57999987 77777          3443     566676654321  1111112    333446655       899999


Q ss_pred             EEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeE
Q 018293           68 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  147 (358)
Q Consensus        68 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v  147 (358)
                      |++|+.||.|++||+.+....                       ......+.+|...|.+++|+|+++.+|++++.||.|
T Consensus        82 l~~~~~dg~v~vw~~~~~~~~-----------------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v  138 (416)
T 2pm9_A           82 IAGALDNGSLELYSTNEANNA-----------------------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEI  138 (416)
T ss_dssp             EEEEESSSCEEEECCSSTTSC-----------------------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCE
T ss_pred             EEEEccCCeEEEeeccccccc-----------------------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeE
Confidence            999999999999999752111                       123345668999999999999867799999999999


Q ss_pred             EEEECCCCc------eeee---ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee------cCCee
Q 018293          148 KIWDVAAGK------CNLT---LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV------AADVE  212 (358)
Q Consensus       148 ~iwd~~~~~------~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~i~  212 (358)
                      ++||+.+++      ....   +..|...|.+++|+|++..++++++.||.|++||+++.+.......+      ...+.
T Consensus       139 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~  218 (416)
T 2pm9_A          139 FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLS  218 (416)
T ss_dssp             EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEE
T ss_pred             EEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceE
Confidence            999999876      3333   36788999999999995589999999999999999987765544443      67899


Q ss_pred             eEEEcCCCCCeEEEEecCC---eEEEEEcccCCCCCCCCCCCccEEEe-ecCCceeEEEecC-CCCcEEEEEeCCCcEEE
Q 018293          213 SLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYNP-LVPNLLATGSTDKMVKL  287 (358)
Q Consensus       213 ~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~-~~~~~l~~~~~dg~i~i  287 (358)
                      +++|+|++..++++++.|+   .|++||+++..        .+...+. .|...|.+++|+| ++ .+|++++.||.|++
T Consensus       219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~  289 (416)
T 2pm9_A          219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNAN--------TPLQTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLL  289 (416)
T ss_dssp             EEEECSSCTTEEEEEECCSSSCCCCEEETTSTT--------SCSBCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEE
T ss_pred             EEEECCCCCCEEEEEECCCCCceEEEEeCCCCC--------CCcEEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEE
Confidence            9999998778999999998   99999999862        4455666 8999999999999 65 89999999999999


Q ss_pred             EecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          288 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       288 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      ||+++++  .+..+..|...|.+++|+|+++.+|++++.||.|++|++.+.....
T Consensus       290 wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~  342 (416)
T 2pm9_A          290 WNPESAE--QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL  342 (416)
T ss_dssp             ECSSSCC--EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred             eeCCCCc--cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence            9999987  5667778999999999999993379999999999999998876543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.7e-40  Score=282.53  Aligned_cols=295  Identities=18%  Similarity=0.222  Sum_probs=220.8

Q ss_pred             CcccCCCcEEEEEEec-CCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCC---CceEEecCCCCe
Q 018293            1 MTINPNDAVIVCARNE-DDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK---GNFMAVGSMEPA   76 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~g~~dg~   76 (358)
                      ++|+|+++.++++... ...+  .+.+|+...+......   .......+.++.|       +|+   +++|++|+.||.
T Consensus        24 ~~~~p~~~~l~~~~s~~~~d~--~v~iw~~~~~~~~~~~---~~~~~~~v~~~~~-------~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           24 CKWVPCSAKFVTMGNFARGTG--VIQLYEIQHGDLKLLR---EIEKAKPIKCGTF-------GATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEECTTSSEEEEEEC--CCCE--EEEEEEECSSSEEEEE---EEEESSCEEEEEC-------TTCCTTTCCEEEEETTSC
T ss_pred             EEEcCCCceEEEecCccCCCc--EEEEEeCCCCccccee---eecccCcEEEEEE-------cCCCCCCceEEEecCCCe
Confidence            4789999766655432 0003  5666666654221121   1122344456666       666   799999999999


Q ss_pred             EEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEE------ecCCCCCcEEEEEEcCCeEEEE
Q 018293           77 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL------AWNKEFRNILASASADKQVKIW  150 (358)
Q Consensus        77 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~------~~~~~~~~~l~s~~~dg~v~iw  150 (358)
                      |++||+.+.+.                          ....+.+|...|.++      +|+|+ +.+|++++.||.|++|
T Consensus        92 i~iwd~~~~~~--------------------------~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~~~~d~~i~vw  144 (357)
T 3i2n_A           92 LHIWNLEAPEM--------------------------PVYSVKGHKEIINAIDGIGGLGIGEG-APEIVTGSRDGTVKVW  144 (357)
T ss_dssp             EEEECTTSCSS--------------------------CSEEECCCSSCEEEEEEESGGGCC-C-CCEEEEEETTSCEEEE
T ss_pred             EEEEeCCCCCc--------------------------cEEEEEecccceEEEeeccccccCCC-ccEEEEEeCCCeEEEE
Confidence            99999975431                          223455799999999      56778 6799999999999999


Q ss_pred             ECCCCc-eeeeeccccc----ceeeEE----EcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC--
Q 018293          151 DVAAGK-CNLTLEHHTD----KVQAVA----WNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH--  219 (358)
Q Consensus       151 d~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~--  219 (358)
                      |+++++ .+..+..|..    .+.+++    |+|++ .++++++.||.|++||+++.+... ...+...+.+++|+|.  
T Consensus       145 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~  222 (357)
T 3i2n_A          145 DPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDI  222 (357)
T ss_dssp             CTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSS
T ss_pred             eCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCC
Confidence            999886 6777765544    788888    67888 899999999999999999877643 5677889999999993  


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc----
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----  295 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----  295 (358)
                      ++..+++++.||.|++||+++.....    ......+..|...|.+++|+|++..+|++++.||.|++||++....    
T Consensus       223 ~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  298 (357)
T 3i2n_A          223 SMNKLVATSLEGKFHVFDMRTQHPTK----GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK  298 (357)
T ss_dssp             SCCEEEEEESTTEEEEEEEEEEETTT----EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C
T ss_pred             CCCEEEEECCCCeEEEEeCcCCCccc----ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc
Confidence            34589999999999999999873211    0011133489999999999999844899999999999999986542    


Q ss_pred             -------------eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          296 -------------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       296 -------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                                   ..+..+..|...|.+++|+|++++++++++.||.|++||+.+.+.
T Consensus       299 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          299 DSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             CTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             cCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence                         246667789999999999999997444899999999999987654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.4e-41  Score=286.00  Aligned_cols=292  Identities=16%  Similarity=0.216  Sum_probs=226.8

Q ss_pred             CcccCC----CcEEEEEEecCCCceEEEEEEeccCCCCCceEe-eceeecCCcccceeeecCCccccCC----CceEEec
Q 018293            1 MTINPN----DAVIVCARNEDDVSHLEVYILEESDGGDPNLYV-HHHIIIPAFPLCMAWLDCPLKDREK----GNFMAVG   71 (358)
Q Consensus         1 l~~~p~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~----~~~l~~g   71 (358)
                      ++|+|+    +..++++..++     .+.+|+...+.....+. +........+.++.|       +|+    +++|++|
T Consensus        24 i~~~p~~~~~~~~~~~~~~~~-----~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~~~~l~~~   91 (366)
T 3k26_A           24 VQFNWHSKEGDPLVFATVGSN-----RVTLYECHSQGEIRLLQSYVDADADENFYTCAW-------TYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCCTTSCEEEEEEETT-----EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEE-------EECTTTCCEEEEEE
T ss_pred             EEEecccCCCCceEEEECCCC-----EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEe-------ccCCCCCCCEEEEe
Confidence            467873    66677776666     77777776543322222 222223344557766       556    7899999


Q ss_pred             CCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEE
Q 018293           72 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  151 (358)
Q Consensus        72 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd  151 (358)
                      +.||.|++||+.+++..                           ..+.+|...|.+++|+|+++.+|++|+.||.|++||
T Consensus        92 ~~dg~i~v~d~~~~~~~---------------------------~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd  144 (366)
T 3k26_A           92 GSRGIIRIINPITMQCI---------------------------KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN  144 (366)
T ss_dssp             ETTCEEEEECTTTCCEE---------------------------EEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             cCCCEEEEEEchhceEe---------------------------eeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence            99999999999754332                           244579999999999994378999999999999999


Q ss_pred             CCCCceeeee---cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-----------------------
Q 018293          152 VAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-----------------------  205 (358)
Q Consensus       152 ~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------------------  205 (358)
                      +++++.+..+   ..|...|.+++|+|++ .++++++.||.|++||+++.+......                       
T Consensus       145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (366)
T 3k26_A          145 IQTDTLVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD  223 (366)
T ss_dssp             TTTTEEEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred             eecCeEEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence            9999988888   6899999999999998 899999999999999998764332211                       


Q ss_pred             -----eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCC-----CCCCCCccEEEeecCCceeEEEecCC--CC
Q 018293          206 -----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP-----DSTSQQSSFTLHAHDKAVCTISYNPL--VP  273 (358)
Q Consensus       206 -----~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~i~~~~~--~~  273 (358)
                           .+...|.+++|+   +.++++++.||.|++||+++.....     .......+..+..|...|.+++|+|+  + 
T Consensus       224 ~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-  299 (366)
T 3k26_A          224 FSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-  299 (366)
T ss_dssp             EEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-
T ss_pred             cccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-
Confidence                 177889999998   3489999999999999998764311     00111336677889999999999998  7 


Q ss_pred             cEEEEEeCCCcEEEEecCCCCce--eeEecCCC--CceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          274 NLLATGSTDKMVKLWDLSNNQPS--CIASRNPK--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       274 ~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      .+|++|+.||.|++||+.++++.  ....+..|  ...|.+++|+|+++ +|++++.||.|++||+.+
T Consensus       300 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          300 KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS-ILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             SEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred             cEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC-eEEEEeCCCEEEEEEecC
Confidence            89999999999999999987643  33355555  78999999999999 588999999999999853

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=8.5e-41  Score=302.41  Aligned_cols=269  Identities=24%  Similarity=0.382  Sum_probs=222.4

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|+|+++.|+++..++     .+.+|+...... .....|    ...+.++       +|+|++++|++|+.||.|++|
T Consensus       309 ~~~~~~~~~l~t~~~d~-----~i~~w~~~~~~~-~~~~~~----~~~v~~~-------~~s~~g~~l~~~~~dg~v~~~  371 (577)
T 2ymu_A          309 VAFSPDGQTIASASDDK-----TVKLWNRNGQHL-QTLTGH----SSSVWGV-------AFSPDGQTIASASDDKTVKLW  371 (577)
T ss_dssp             EEECTTSSEEEEEETTS-----CEEEEETTSCEE-EEECCC----SSCEEEE-------EECTTSSEEEEEETTSEEEEE
T ss_pred             EEECCCCCEEEEEeCCC-----eEEEEeCCCCee-EEEeCC----CCCEEEE-------EECCCCCEEEEEeCCCEEEEE
Confidence            46899999999997776     667777654311 111111    2222344       458999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      +...                            .....+.+|...|.+++|+|+ +++|++++.|+.|++||. +++.+..
T Consensus       372 ~~~~----------------------------~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~~d~~v~~~~~-~~~~~~~  421 (577)
T 2ymu_A          372 NRNG----------------------------QLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR-NGQLLQT  421 (577)
T ss_dssp             ETTC----------------------------CEEEEEECCSSCEEEEEECTT-SSCEEEEETTSEEEEECT-TCCEEEE
T ss_pred             cCCC----------------------------CEEEEecCCCCCeEEEEECCC-CCEEEEEeCCCEEEEEeC-CCCEEEE
Confidence            9642                            122244579999999999999 678999999999999995 5778888


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      +.+|...|++++|+|++ .++++++.|+.|++||.. .+.......|...|.+++|+|+ +.++++++.|+.|++||.. 
T Consensus       422 ~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd-~~~las~~~d~~i~iw~~~-  497 (577)
T 2ymu_A          422 LTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNRN-  497 (577)
T ss_dssp             EECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTT-SCEEEEEETTSEEEEEETT-
T ss_pred             ecCCCCCeEEEEECCCC-CEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEcCC-
Confidence            99999999999999999 899999999999999964 4444556678899999999995 5599999999999999953 


Q ss_pred             CCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeE
Q 018293          241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFV  320 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  320 (358)
                      +         +.+..+.+|...|++++|+|++ ++|++++.||.|++||.. ++  .+..+.+|...|++++|+||+++ 
T Consensus       498 ~---------~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~v~lwd~~-~~--~~~~~~~h~~~v~~~~fs~dg~~-  563 (577)
T 2ymu_A          498 G---------QLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVWGVAFSPDGQT-  563 (577)
T ss_dssp             S---------CEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-SC--EEEEEECCSSCEEEEEECTTSSC-
T ss_pred             C---------CEEEEEeCCCCCEEEEEEcCCC-CEEEEEECcCEEEEEeCC-CC--EEEEEcCCCCCEEEEEEcCCCCE-
Confidence            3         6778899999999999999998 899999999999999964 44  56677899999999999999996 


Q ss_pred             EEEEccCCeEEEEE
Q 018293          321 LAIGGSKGKLEIWD  334 (358)
Q Consensus       321 l~~~~~dg~i~vw~  334 (358)
                      |++++.|+.|++||
T Consensus       564 l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          564 IASASSDKTVKLWN  577 (577)
T ss_dssp             EEEEETTSCEEEEC
T ss_pred             EEEEeCCCEEEEeC
Confidence            88999999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3e-40  Score=280.24  Aligned_cols=254  Identities=21%  Similarity=0.305  Sum_probs=215.8

Q ss_pred             cccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEE
Q 018293           48 FPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  127 (358)
Q Consensus        48 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  127 (358)
                      .+.|+.|       +|++++|++|+.||+|+|||..+.....                           .+..|...|.+
T Consensus        66 ~V~~~~~-------s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---------------------------~~~~~~~~v~~  111 (354)
T 2pbi_B           66 KVLCMDW-------CKDKRRIVSSSQDGKVIVWDSFTTNKEH---------------------------AVTMPCTWVMA  111 (354)
T ss_dssp             CEEEEEE-------CTTSSEEEEEETTSEEEEEETTTCCEEE---------------------------EEECSSSCCCE
T ss_pred             eEEEEEE-------CCCCCEEEEEeCCCeEEEEECCCCCcce---------------------------EEecCCCCEEE
Confidence            3446655       8999999999999999999986543222                           23357888999


Q ss_pred             EecCCCCCcEEEEEEcCCeEEEEECCCC------ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc
Q 018293          128 LAWNKEFRNILASASADKQVKIWDVAAG------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS  201 (358)
Q Consensus       128 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  201 (358)
                      ++|+|+ +.++++|+.|+.+++|++...      .....+..|...|.+++|+|++ ..+++++.|++|++||+++++..
T Consensus       112 ~~~sp~-g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~  189 (354)
T 2pbi_B          112 CAYAPS-GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLL  189 (354)
T ss_dssp             EEECTT-SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEECCC-CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEE
Confidence            999999 679999999999999998643      3455677899999999999998 88999999999999999998887


Q ss_pred             cceeeecCCeeeEEEcCC-CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe
Q 018293          202 GFKWAVAADVESLAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       202 ~~~~~~~~~i~~~~~~~~-~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~  280 (358)
                      .....|...+.+++|+|+ +++++++|+.||.|++||++++         ..+..+..|...|++++|+|++ .+|++|+
T Consensus       190 ~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~---------~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s  259 (354)
T 2pbi_B          190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG---------QCVQAFETHESDVNSVRYYPSG-DAFASGS  259 (354)
T ss_dssp             EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTS-SEEEEEE
T ss_pred             EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---------cEEEEecCCCCCeEEEEEeCCC-CEEEEEe
Confidence            777788999999999985 3479999999999999999987         7788889999999999999998 8999999


Q ss_pred             CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293          281 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       281 ~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                      .|++|++||++..+.........+...+.+++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|.
T Consensus       260 ~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~l~~h~  326 (354)
T 2pbi_B          260 DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFGHE  326 (354)
T ss_dssp             TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCCceEEEEECCC
Confidence            99999999999887444443344456789999999999 58899999999999999988776655543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-41  Score=293.34  Aligned_cols=298  Identities=18%  Similarity=0.238  Sum_probs=234.0

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCC-CceEEecCCCCeEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAVGSMEPAIEI   79 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~v   79 (358)
                      ++|+|++++|+++..++     .+.+|+.............-......+.++.|       +|+ +++|++|+.||.|++
T Consensus        73 ~~~s~~~~~l~~~~~dg-----~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~-------~~~~~~~l~s~~~dg~v~i  140 (416)
T 2pm9_A           73 LDWSHNNKIIAGALDNG-----SLELYSTNEANNAINSMARFSNHSSSVKTVKF-------NAKQDNVLASGGNNGEIFI  140 (416)
T ss_dssp             EEECSSSSCEEEEESSS-----CEEEECCSSTTSCCCEEEECCCSSSCCCEEEE-------CSSSTTBEEEECSSSCEEB
T ss_pred             EEECCCCCeEEEEccCC-----eEEEeecccccccccchhhccCCccceEEEEE-------cCCCCCEEEEEcCCCeEEE
Confidence            46899999999997776     67777776521111011111112334456666       787 899999999999999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  159 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  159 (358)
                      ||+.+.+.....                  ..........+|...|.+++|+|+++.+|++++.||.|++||+++++.+.
T Consensus       141 wd~~~~~~~~~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  202 (416)
T 2pm9_A          141 WDMNKCTESPSN------------------YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI  202 (416)
T ss_dssp             CBTTTTSSCTTT------------------CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEE
T ss_pred             EECCCCcccccc------------------ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcce
Confidence            999865421100                  00011123457999999999999977899999999999999999999888


Q ss_pred             eeccc------ccceeeEEEcCCCCcEEEEEeCCC---cEEEEEcccC-CCcccee-eecCCeeeEEEcCCCCCeEEEEe
Q 018293          160 TLEHH------TDKVQAVAWNHHSPQILLSGSFDR---SVVMKDARIS-THSGFKW-AVAADVESLAWDPHAEHSFVVSL  228 (358)
Q Consensus       160 ~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~-~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~  228 (358)
                      .+..+      ...+.+++|+|++..++++++.|+   .|++||+++. ....... .+...+.+++|+|+++.++++++
T Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~  282 (416)
T 2pm9_A          203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG  282 (416)
T ss_dssp             EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEE
T ss_pred             EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEe
Confidence            88766      789999999999867999999999   9999999986 4444444 68899999999996667999999


Q ss_pred             cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe--------
Q 018293          229 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS--------  300 (358)
Q Consensus       229 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------  300 (358)
                      .||.|++||+++.         +.+..+..|...|.+++|+|+++.+|++++.|+.|++||+.+........        
T Consensus       283 ~dg~v~~wd~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  353 (416)
T 2pm9_A          283 RDNTVLLWNPESA---------EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQE  353 (416)
T ss_dssp             SSSEEEEECSSSC---------CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---------
T ss_pred             CCCCEEEeeCCCC---------ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccC
Confidence            9999999999987         77888999999999999999987899999999999999998765321110        


Q ss_pred             -------------------------cCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          301 -------------------------RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       301 -------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                                               ...|..++.+++|+|+|+ +|++++.||.|+||++.++
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          354 SETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK-LVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             -------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE-EECBCTTSSCBCCBCCCCC
T ss_pred             CcccccccccccccccccccccccCCccccCCccceEEeeCCe-EEEEeCCCCeEEEEEeccC
Confidence                                     011567788999999999 5999999999999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.4e-40  Score=289.43  Aligned_cols=281  Identities=15%  Similarity=0.181  Sum_probs=222.0

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|+|+++.|+++..++     .+++|+............+.      ..++      ..|++++++|++|+.||.|++|
T Consensus        62 ~~~s~~g~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~------~~~~------~~~~~~~~~l~~~~~dg~i~iw  124 (420)
T 3vl1_A           62 NTFEKVGSHLYKARLDG-----HDFLFNTIIRDGSKMLKRAD------YTAV------DTAKLQMRRFILGTTEGDIKVL  124 (420)
T ss_dssp             CEEEEEETTEEEEEETT-----EEEEEECCSEETTTTSCSCC------EEEE------EEECSSSCEEEEEETTSCEEEE
T ss_pred             eeeeecCCeEEEEEcCC-----cEEEEEecccceeeEEecCC------ceEE------EEEecCCCEEEEEECCCCEEEE
Confidence            47899999999998887     88888876542222222221      1122      1248999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      |+.+..                           ....+.+|...|++++|+|+ +.+|++|+.|+.|++||+.+++.+..
T Consensus       125 d~~~~~---------------------------~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~  176 (420)
T 3vl1_A          125 DSNFNL---------------------------QREIDQAHVSEITKLKFFPS-GEALISSSQDMQLKIWSVKDGSNPRT  176 (420)
T ss_dssp             CTTSCE---------------------------EEEETTSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCCCEE
T ss_pred             eCCCcc---------------------------eeeecccccCccEEEEECCC-CCEEEEEeCCCeEEEEeCCCCcCceE
Confidence            986432                           22345579999999999999 67999999999999999999999999


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee---e---------------------cCCeeeEEE
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---V---------------------AADVESLAW  216 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---------------------~~~i~~~~~  216 (358)
                      +.+|...|.+++|+|++ .+|++++.|+.|++||+++++.......   +                     ...+.+++|
T Consensus       177 ~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~  255 (420)
T 3vl1_A          177 LIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF  255 (420)
T ss_dssp             EECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred             EcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence            99999999999999998 8999999999999999988765543322   2                     244556667


Q ss_pred             cCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          217 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      +|+ +.++++++.||.|++||+++.         .....+ ..|...|.+++|+|++..+|++|+.||.|++||+++++.
T Consensus       256 s~~-~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          256 GTY-GKYVIAGHVSGVITVHNVFSK---------EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             SCT-TEEEEEEETTSCEEEEETTTC---------CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred             cCC-CCEEEEEcCCCeEEEEECCCC---------ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence            784 558999999999999999887         444444 457889999999999844999999999999999998753


Q ss_pred             eeeEecC-CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          296 SCIASRN-PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       296 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      . +..+. .|...|.++.+. +++ +|++++.||.|++|++.+.+.
T Consensus       326 ~-~~~~~~~~~~~v~~~~~~-~~~-~l~s~~~d~~v~iw~~~~~~~  368 (420)
T 3vl1_A          326 P-VGEFLINEGTPINNVYFA-AGA-LFVSSGFDTSIKLDIISDPES  368 (420)
T ss_dssp             C-SEEEEESTTSCEEEEEEE-TTE-EEEEETTTEEEEEEEECCTTC
T ss_pred             c-hhhhhccCCCCceEEEeC-CCC-EEEEecCCccEEEEeccCCCC
Confidence            2 23333 367788888654 666 589999999999999987543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-39  Score=280.33  Aligned_cols=273  Identities=19%  Similarity=0.309  Sum_probs=211.4

Q ss_pred             cCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCccc
Q 018293           45 IPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS  124 (358)
Q Consensus        45 ~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  124 (358)
                      ....+.|++|       +|+|++||+|+ ++.++||++.+++............         .............+...
T Consensus        63 h~~~V~~v~f-------spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~  125 (393)
T 1erj_A           63 HTSVVCCVKF-------SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN---------KDPENLNTSSSPSSDLY  125 (393)
T ss_dssp             CSSCCCEEEE-------CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------------CCCCB
T ss_pred             CCCEEEEEEE-------CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc---------cccccccccccCCCcee
Confidence            3444556655       99999999987 7899999998765433211000000         00000000111234456


Q ss_pred             EEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce
Q 018293          125 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  204 (358)
Q Consensus       125 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  204 (358)
                      |.+++|+|+ +++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++... .
T Consensus       126 v~~v~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~-~  202 (393)
T 1erj_A          126 IRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSL-T  202 (393)
T ss_dssp             EEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE-E
T ss_pred             EEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEE-E
Confidence            999999999 6799999999999999999999999999999999999999999 899999999999999999876544 3


Q ss_pred             eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-------eecCCceeEEEecCCCCcEEE
Q 018293          205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-------HAHDKAVCTISYNPLVPNLLA  277 (358)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~~l~  277 (358)
                      ..+...+.+++|+|.++.++++|+.||.|++||++++         ..+..+       .+|...|.+++|+|++ .+|+
T Consensus       203 ~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~---------~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~  272 (393)
T 1erj_A          203 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG---------FLVERLDSENESGTGHKDSVYSVVFTRDG-QSVV  272 (393)
T ss_dssp             EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC---------CEEEEEC------CCCSSCEEEEEECTTS-SEEE
T ss_pred             EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC---------cEEEeecccccCCCCCCCCEEEEEECCCC-CEEE
Confidence            4567789999999966779999999999999999876         334333       5788999999999998 8999


Q ss_pred             EEeCCCcEEEEecCCCCc----------eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293          278 TGSTDKMVKLWDLSNNQP----------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       278 ~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                      +|+.|+.|++||+++...          .+...+.+|...|.+++|+|++++ |++|+.||.|++||+.+++.+..+-+|
T Consensus       273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~iwd~~~~~~~~~l~~h  351 (393)
T 1erj_A          273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKKSGNPLLMLQGH  351 (393)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCE-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCE-EEEEeCCCeEEEEECCCCeEEEEECCC
Confidence            999999999999976431          234566789999999999999995 889999999999999998877655444


Q ss_pred             C
Q 018293          348 Y  348 (358)
Q Consensus       348 ~  348 (358)
                      .
T Consensus       352 ~  352 (393)
T 1erj_A          352 R  352 (393)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.9e-39  Score=272.60  Aligned_cols=279  Identities=17%  Similarity=0.295  Sum_probs=228.5

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceE-eeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLY-VHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI   79 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v   79 (358)
                      ++|+|++++|+++. ++     .+.+|+...+...... ..........+.++.|       +|++++|++++.||.|++
T Consensus        57 ~~~~~~~~~l~~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~d~~i~~  123 (337)
T 1gxr_A           57 VTISNPTRHVYTGG-KG-----CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL-------LPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             EEECSSSSEEEEEC-BS-----EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEE-------CTTSSEEEEEESSSEEEE
T ss_pred             EEEecCCcEEEEcC-CC-----eEEEEECCCCCceeeeecccccCCCCcEEEEEE-------cCCCCEEEEEcCCCcEEE
Confidence            46899999999996 65     7788887654322221 1111112334445555       899999999999999999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  159 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  159 (358)
                      ||+.+.+.                         .....+..|...|.+++|+|+ +.++++++.||.|++||+++++.+.
T Consensus       124 ~d~~~~~~-------------------------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~  177 (337)
T 1gxr_A          124 WDLAAPTP-------------------------RIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTLVR  177 (337)
T ss_dssp             EECCCC---------------------------EEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EECCCCCc-------------------------ceeeecccCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceee
Confidence            99975431                         122344568899999999998 6799999999999999999999999


Q ss_pred             eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcc
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR  239 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~  239 (358)
                      .+..|...+.+++|+|++ .++++++.||.|++||+++.+... ...+...+.+++|+|+ +.++++++.+|.|++||++
T Consensus       178 ~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~v~~~~~s~~-~~~l~~~~~~~~i~~~~~~  254 (337)
T 1gxr_A          178 QFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQ-QHDFTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVN  254 (337)
T ss_dssp             EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEECTT-SSEEEEEETTSCEEEEETT
T ss_pred             eeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceEe-eecCCCceEEEEECCC-CCEEEEEcCCCcEEEEECC
Confidence            999999999999999998 899999999999999999877655 4467788999999995 5589999999999999998


Q ss_pred             cCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCe
Q 018293          240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF  319 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  319 (358)
                      +.         . ...+..|...|.+++|+|++ .+|++++.||.|++||+.+++..  . ...|...+.+++|+|+++ 
T Consensus       255 ~~---------~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~~--~-~~~~~~~v~~~~~s~~~~-  319 (337)
T 1gxr_A          255 KP---------D-KYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASI--F-QSKESSSVLSCDISVDDK-  319 (337)
T ss_dssp             SS---------C-EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE--E-EEECSSCEEEEEECTTSC-
T ss_pred             CC---------C-eEEEcCCccceeEEEECCCC-CEEEEecCCCcEEEEECCCCeEE--E-EecCCCcEEEEEECCCCC-
Confidence            75         2 45677899999999999998 89999999999999999998743  2 234678899999999999 


Q ss_pred             EEEEEccCCeEEEEEcc
Q 018293          320 VLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       320 ~l~~~~~dg~i~vw~~~  336 (358)
                      .|++++.||.|++|++.
T Consensus       320 ~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          320 YIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEEETTSCEEEEEEE
T ss_pred             EEEEecCCCeEEEEEEe
Confidence            48889999999999973

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.4e-39  Score=295.69  Aligned_cols=290  Identities=16%  Similarity=0.162  Sum_probs=227.8

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC----Ce
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME----PA   76 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d----g~   76 (358)
                      ++|+|+|++|++|..++     .+.+|+...+......  .-......+.+++|       +|++++|++++.+    +.
T Consensus        65 ~~~spdg~~lasg~~d~-----~v~lWd~~~~~~~~~~--~~~~~~~~v~~v~f-------s~dg~~l~~~~~~~~~~~~  130 (611)
T 1nr0_A           65 AKTSPSGYYCASGDVHG-----NVRIWDTTQTTHILKT--TIPVFSGPVKDISW-------DSESKRIAAVGEGRERFGH  130 (611)
T ss_dssp             EEECTTSSEEEEEETTS-----EEEEEESSSTTCCEEE--EEECSSSCEEEEEE-------CTTSCEEEEEECCSSCSEE
T ss_pred             EEECCCCcEEEEEeCCC-----CEEEeECCCCcceeeE--eecccCCceEEEEE-------CCCCCEEEEEECCCCceeE
Confidence            47999999999998877     7888887543211111  11112233345544       8999999988765    47


Q ss_pred             EEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc
Q 018293           77 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK  156 (358)
Q Consensus        77 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  156 (358)
                      |++||..  ..                           ...+.+|...|++++|+|++...|++|+.|++|++||..+++
T Consensus       131 v~~wd~~--~~---------------------------~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~  181 (611)
T 1nr0_A          131 VFLFDTG--TS---------------------------NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK  181 (611)
T ss_dssp             EEETTTC--CB---------------------------CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred             EEEeeCC--CC---------------------------cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe
Confidence            8888742  11                           124568999999999999965679999999999999999999


Q ss_pred             eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-------eecCCeeeEEEcCCCCCeEEEEec
Q 018293          157 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-------AVAADVESLAWDPHAEHSFVVSLE  229 (358)
Q Consensus       157 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~  229 (358)
                      +...+.+|...|.+++|+|++ .+|++++.|++|++||+.+++......       .|...|.+++|+|+ +.++++++.
T Consensus       182 ~~~~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~l~s~s~  259 (611)
T 1nr0_A          182 FKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD-GTKIASASA  259 (611)
T ss_dssp             EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT-SSEEEEEET
T ss_pred             EeeeeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC-CCEEEEEeC
Confidence            999999999999999999999 899999999999999998776544332       68889999999995 558999999


Q ss_pred             CCeEEEEEcccCCCCCCC----------------------------------CCCCccEEEeecCCceeEEEecCCCCcE
Q 018293          230 DGTIKGFDIRTAKSDPDS----------------------------------TSQQSSFTLHAHDKAVCTISYNPLVPNL  275 (358)
Q Consensus       230 dg~i~i~d~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~i~~i~~~~~~~~~  275 (358)
                      |++|++||+++++.....                                  ........+.+|...|++++|+|++ .+
T Consensus       260 D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~  338 (611)
T 1nr0_A          260 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KT  338 (611)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SE
T ss_pred             CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CE
Confidence            999999999875321100                                  0011234556899999999999998 89


Q ss_pred             EEEEeCCCcEEEEecCCCCceeeEec-CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          276 LATGSTDKMVKLWDLSNNQPSCIASR-NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       276 l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      |++++.|+.|++||+.+++.  ...+ ..|...|.+++|++++.  +++++.|+.+++|++.++..
T Consensus       339 l~s~s~D~~v~~Wd~~~~~~--~~~~~~~h~~~v~~~~~s~~~~--l~s~s~d~~v~~w~~~~~~~  400 (611)
T 1nr0_A          339 LFSADAEGHINSWDISTGIS--NRVFPDVHATMITGIKTTSKGD--LFTVSWDDHLKVVPAGGSGV  400 (611)
T ss_dssp             EEEEETTSCEEEEETTTCCE--EECSSCSCSSCEEEEEECTTSC--EEEEETTTEEEEECSSSSSS
T ss_pred             EEEEeCCCcEEEEECCCCce--eeecccCCcceEEEEEECCCCc--EEEEEcCCceEEeecCCccc
Confidence            99999999999999998873  3333 57889999999998875  77899999999999876543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.2e-40  Score=279.30  Aligned_cols=244  Identities=23%  Similarity=0.363  Sum_probs=202.0

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      +|+|+|++||+|+.|+.|+|||+.+.....                        ......+|...|.+++|+|+ +++|+
T Consensus        23 ~~sp~g~~las~~~D~~i~iw~~~~~~~~~------------------------~~~~~~~h~~~v~~~~~sp~-g~~l~   77 (345)
T 3fm0_A           23 AWNPAGTLLASCGGDRRIRIWGTEGDSWIC------------------------KSVLSEGHQRTVRKVAWSPC-GNYLA   77 (345)
T ss_dssp             EECTTSSCEEEEETTSCEEEEEEETTEEEE------------------------EEEECSSCSSCEEEEEECTT-SSEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEEcCCCccee------------------------eeeeccccCCcEEEEEECCC-CCEEE
Confidence            449999999999999999999987532111                        11123579999999999999 67999


Q ss_pred             EEEcCCeEEEEECCCC--ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc---cceeeecCCeeeE
Q 018293          140 SASADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---GFKWAVAADVESL  214 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~~  214 (358)
                      +|+.|+++++||+.++  +++..+.+|...|.+++|+|++ ++|++++.|+.|++||++.....   .....|...|.++
T Consensus        78 s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~  156 (345)
T 3fm0_A           78 SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV  156 (345)
T ss_dssp             EEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEE
T ss_pred             EEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEE
Confidence            9999999999999876  4577889999999999999999 89999999999999999876542   2344678889999


Q ss_pred             EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293          215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~  294 (358)
                      +|+|+ +.++++++.|+.|++||.+....       .....+.+|...|.+++|+|++ .+|++|+.|++|++||.....
T Consensus       157 ~~~p~-~~~l~s~s~d~~i~~w~~~~~~~-------~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~  227 (345)
T 3fm0_A          157 VWHPS-QELLASASYDDTVKLYREEEDDW-------VCCATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPG  227 (345)
T ss_dssp             EECSS-SSCEEEEETTSCEEEEEEETTEE-------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTT
T ss_pred             EECCC-CCEEEEEeCCCcEEEEEecCCCE-------EEEEEecCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCC
Confidence            99995 45899999999999999987521       3456788999999999999998 899999999999999974321


Q ss_pred             c-------------eeeEecCC-CCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          295 P-------------SCIASRNP-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       295 ~-------------~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      .             .++..+.+ |...|.+++|+|++.. |++++.|+.|++|+...+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~i~vw~~~~~~  285 (345)
T 3fm0_A          228 NEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA-LATACGDDAIRVFQEDPNS  285 (345)
T ss_dssp             CTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC-EEEEETTSCEEEEEECTTS
T ss_pred             CCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE-EEEEeCCCeEEEEEeCCCC
Confidence            1             12233333 7889999999999994 8999999999999987654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.2e-39  Score=294.84  Aligned_cols=282  Identities=23%  Similarity=0.344  Sum_probs=230.2

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|+|+++.++++..++     .+.+|+.... .......|    ...+.++       +|+|++++|++++.||.|++|
T Consensus       268 v~~~~d~~~l~~~~~d~-----~i~~w~~~~~-~~~~~~~h----~~~v~~~-------~~~~~~~~l~t~~~d~~i~~w  330 (577)
T 2ymu_A          268 VAFRPDGQTIASASDDK-----TVKLWNRNGQ-LLQTLTGH----SSSVWGV-------AFSPDGQTIASASDDKTVKLW  330 (577)
T ss_dssp             EEECTTSSEEEEEETTS-----CEEEEETTSC-EEEEECCC----SSCEEEE-------EECTTSSEEEEEETTSCEEEE
T ss_pred             EEEcCCCCEEEEEeCCC-----EEEEEeCCCc-EEEEEecC----CCCeEEE-------EECCCCCEEEEEeCCCeEEEE
Confidence            46899999999997776     6777876442 11111112    2222333       458999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      |.....                            ...+.+|...|.+++|+|+ +.+|++++.|+.|++||. +++.+..
T Consensus       331 ~~~~~~----------------------------~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~v~~~~~-~~~~~~~  380 (577)
T 2ymu_A          331 NRNGQH----------------------------LQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNR-NGQLLQT  380 (577)
T ss_dssp             ETTSCE----------------------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TCCEEEE
T ss_pred             eCCCCe----------------------------eEEEeCCCCCEEEEEECCC-CCEEEEEeCCCEEEEEcC-CCCEEEE
Confidence            975321                            1234579999999999999 679999999999999995 5778888


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      +.+|...|.+++|+|++ ++|++++.|+.|++||.. ++.......+...|.+++|+|+ +.++++++.|+.|++||...
T Consensus       381 ~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~~d~~v~~w~~~~  457 (577)
T 2ymu_A          381 LTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPD-DQTIASASDDKTVKLWNRNG  457 (577)
T ss_dssp             EECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTS
T ss_pred             ecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCC-CCEEEEEcCCCEEEEEECCC
Confidence            99999999999999999 889999999999999964 4444556678899999999995 55899999999999999642


Q ss_pred             CCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeE
Q 018293          241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFV  320 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  320 (358)
                                +.+..+.+|...|.+++|+|++ .+|++++.|+.|++||.. ++  .+..+.+|...|++++|+|++++ 
T Consensus       458 ----------~~~~~~~~~~~~v~~~~~spd~-~~las~~~d~~i~iw~~~-~~--~~~~~~~h~~~v~~l~~s~dg~~-  522 (577)
T 2ymu_A          458 ----------QLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVRGVAFSPDGQT-  522 (577)
T ss_dssp             ----------CEEEEEECCSSCEEEEEECTTS-CEEEEEETTSEEEEEETT-SC--EEEEEECCSSCEEEEEECTTSSC-
T ss_pred             ----------CEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEcCC-CC--EEEEEeCCCCCEEEEEEcCCCCE-
Confidence                      5677888999999999999998 899999999999999964 44  56677889999999999999995 


Q ss_pred             EEEEccCCeEEEEEccCCCccccccccC
Q 018293          321 LAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       321 l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                      |++++.||.|++||. +++.+..+.+|.
T Consensus       523 l~s~~~dg~v~lwd~-~~~~~~~~~~h~  549 (577)
T 2ymu_A          523 IASASDDKTVKLWNR-NGQLLQTLTGHS  549 (577)
T ss_dssp             EEEEETTSEEEEECT-TSCEEEEEECCS
T ss_pred             EEEEECcCEEEEEeC-CCCEEEEEcCCC
Confidence            889999999999996 566666655543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9.1e-40  Score=279.60  Aligned_cols=286  Identities=15%  Similarity=0.150  Sum_probs=224.7

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCC--CCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGG--DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE   78 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~   78 (358)
                      ++|+|++++|+++..++     .+++|+...+.  ....+..    ....+.++.|       +|++++|++|+.||.|+
T Consensus        14 ~~~s~~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~~----h~~~v~~~~~-------~~~~~~l~~~~~dg~i~   77 (372)
T 1k8k_C           14 HAWNKDRTQIAICPNNH-----EVHIYEKSGNKWVQVHELKE----HNGQVTGVDW-------APDSNRIVTCGTDRNAY   77 (372)
T ss_dssp             EEECTTSSEEEEECSSS-----EEEEEEEETTEEEEEEEEEC----CSSCEEEEEE-------ETTTTEEEEEETTSCEE
T ss_pred             EEECCCCCEEEEEeCCC-----EEEEEeCCCCcEEeeeeecC----CCCcccEEEE-------eCCCCEEEEEcCCCeEE
Confidence            46899999999997776     77778776642  1112222    2334446655       88999999999999999


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce-
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-  157 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-  157 (358)
                      +||+.+.+...                         ...+..|...|.+++|+|+ +.+|++++.|+.|++||++.++. 
T Consensus        78 vwd~~~~~~~~-------------------------~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~  131 (372)
T 1k8k_C           78 VWTLKGRTWKP-------------------------TLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQENDW  131 (372)
T ss_dssp             EEEEETTEEEE-------------------------EEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTTTE
T ss_pred             EEECCCCeeee-------------------------eEEeecCCCceeEEEECCC-CCEEEEEeCCCEEEEEEecCCCcc
Confidence            99997543211                         2233468899999999999 67999999999999999988762 


Q ss_pred             ---eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc------------------cCCCccceeeecCCeeeEEE
Q 018293          158 ---NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR------------------ISTHSGFKWAVAADVESLAW  216 (358)
Q Consensus       158 ---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~i~~~~~  216 (358)
                         ......|...|.+++|+|++ .++++++.||.|++||++                  .++.......+...+.+++|
T Consensus       132 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  210 (372)
T 1k8k_C          132 WVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF  210 (372)
T ss_dssp             EEEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE
T ss_pred             eeeeeeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEE
Confidence               23336688999999999998 899999999999999965                  23333333467788999999


Q ss_pred             cCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC--CC
Q 018293          217 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN--NQ  294 (358)
Q Consensus       217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~--~~  294 (358)
                      +|+ +.++++++.||.|++||+++.         ..+..+..|..+|.+++|+|++ .++++| .|+.|++|++++  ++
T Consensus       211 ~~~-~~~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~  278 (372)
T 1k8k_C          211 SAN-GSRVAWVSHDSTVCLADADKK---------MAVATLASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGK  278 (372)
T ss_dssp             CSS-SSEEEEEETTTEEEEEEGGGT---------TEEEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTE
T ss_pred             CCC-CCEEEEEeCCCEEEEEECCCC---------ceeEEEccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCce
Confidence            995 459999999999999999987         7788889999999999999988 777777 899999999987  32


Q ss_pred             ceee------------------------------------Eec-CCCCceeEEEEEc-CCC---CeEEEEEccCCeEEEE
Q 018293          295 PSCI------------------------------------ASR-NPKAGAVFSVAFS-EDS---PFVLAIGGSKGKLEIW  333 (358)
Q Consensus       295 ~~~~------------------------------------~~~-~~~~~~v~~~~~~-~~~---~~~l~~~~~dg~i~vw  333 (358)
                      ....                                    ..+ .+|...|++++|. ++|   . +|++|+.||.|++|
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~-~l~s~~~Dg~i~~W  357 (372)
T 1k8k_C          279 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS-QFCTTGMDGGMSIW  357 (372)
T ss_dssp             EEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS-EEEEEETTSEEEEE
T ss_pred             EEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee-eEEEecCCCceEEE
Confidence            1000                                    222 4899999999976 565   7 69999999999999


Q ss_pred             EccCCCccc
Q 018293          334 DTLSDAGIS  342 (358)
Q Consensus       334 ~~~~~~~~~  342 (358)
                      ++.+++.+.
T Consensus       358 ~~~~~~~~~  366 (372)
T 1k8k_C          358 DVRSLESAL  366 (372)
T ss_dssp             EHHHHHHHC
T ss_pred             EecChhHhh
Confidence            998866543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.6e-39  Score=270.85  Aligned_cols=285  Identities=13%  Similarity=0.151  Sum_probs=227.4

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++++|+|+.++++...+     .+..+....    .............+.++.|       +|++++|++++ ||.|++|
T Consensus        15 ~~~s~dg~~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~h~~~v~~~~~-------~~~~~~l~~~~-dg~i~iw   77 (337)
T 1gxr_A           15 FHVTADGQMQPVPFPPD-----ALIGPGIPR----HARQINTLNHGEVVCAVTI-------SNPTRHVYTGG-KGCVKVW   77 (337)
T ss_dssp             EEECSSSCEEECCCCTT-----SSSSTTCCS----EEEEEEEECCSSCCCEEEE-------CSSSSEEEEEC-BSEEEEE
T ss_pred             EEECCCCCEEEeecCCC-----cEeccccCC----ccccceeccCCCceEEEEE-------ecCCcEEEEcC-CCeEEEE
Confidence            46899999999886554     111121111    1111111223444556655       89999999999 9999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc--ee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK--CN  158 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~  158 (358)
                      |+.+.........                      ....+|...|.+++|+|+ +++|++++.||.|++||+++++  ..
T Consensus        78 ~~~~~~~~~~~~~----------------------~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~  134 (337)
T 1gxr_A           78 DISHPGNKSPVSQ----------------------LDCLNRDNYIRSCKLLPD-GCTLIVGGEASTLSIWDLAAPTPRIK  134 (337)
T ss_dssp             ETTSTTCCSCSEE----------------------EECSCTTSBEEEEEECTT-SSEEEEEESSSEEEEEECCCC--EEE
T ss_pred             ECCCCCceeeeec----------------------ccccCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCCccee
Confidence            9986543322111                      112368899999999999 6799999999999999999887  56


Q ss_pred             eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293          159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  238 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~  238 (358)
                      ..+..|...+.+++|+|++ .++++++.||.|++||+++.+.......+...+.+++|+|+ +..+++++.||.|++||+
T Consensus       135 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~  212 (337)
T 1gxr_A          135 AELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND-GTKLWTGGLDNTVRSWDL  212 (337)
T ss_dssp             EEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEET
T ss_pred             eecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCC-CCEEEEEecCCcEEEEEC
Confidence            6778899999999999998 89999999999999999988776666678899999999995 568999999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCC
Q 018293          239 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP  318 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  318 (358)
                      ++.         .....+ .+...+.+++|+|++ .+|++++.|+.|++||+++.+   ......|...|.+++|+|+++
T Consensus       213 ~~~---------~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~  278 (337)
T 1gxr_A          213 REG---------RQLQQH-DFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPD---KYQLHLHESCVLSLKFAYCGK  278 (337)
T ss_dssp             TTT---------EEEEEE-ECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSC---EEEECCCSSCEEEEEECTTSS
T ss_pred             CCC---------ceEeee-cCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCC---eEEEcCCccceeEEEECCCCC
Confidence            876         444444 477889999999998 899999999999999999886   345678899999999999999


Q ss_pred             eEEEEEccCCeEEEEEccCCCccc
Q 018293          319 FVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       319 ~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                       +|++++.||.|++||+.+++.+.
T Consensus       279 -~l~~~~~dg~i~~~~~~~~~~~~  301 (337)
T 1gxr_A          279 -WFVSTGKDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             -EEEEEETTSEEEEEETTTCCEEE
T ss_pred             -EEEEecCCCcEEEEECCCCeEEE
Confidence             58899999999999999988763

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.6e-40  Score=283.50  Aligned_cols=246  Identities=22%  Similarity=0.308  Sum_probs=206.3

Q ss_pred             ccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           61 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        61 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      |+|++++|++|+.||+|+|||+.+++..                           ..+..|...|.+++|+|+ +.+|++
T Consensus        74 ~sp~~~~l~s~s~D~~v~iWd~~~~~~~---------------------------~~~~~h~~~v~~~~~s~~-g~~las  125 (380)
T 3iz6_a           74 WTPEKNWIVSASQDGRLIVWNALTSQKT---------------------------HAIKLHCPWVMECAFAPN-GQSVAC  125 (380)
T ss_dssp             ECTTSSCEEEEETTSEEEEEETTTTEEE---------------------------EEEECCCTTCCCCEECTT-SSEEEE
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCccc---------------------------eEEecCCCCEEEEEECCC-CCEEEE
Confidence            3899999999999999999998754332                           244579999999999999 679999


Q ss_pred             EEcCCeEEEEECCCC-------ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce-----eeec
Q 018293          141 ASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-----WAVA  208 (358)
Q Consensus       141 ~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~  208 (358)
                      |+.|+.+++||+.+.       .....+.+|...+.++.|.|+++..|++++.|++|++||+++++.....     ..|.
T Consensus       126 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~  205 (380)
T 3iz6_a          126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT  205 (380)
T ss_dssp             CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC
T ss_pred             eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc
Confidence            999999999998753       2345678899999999999987678999999999999999988765433     4577


Q ss_pred             CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEE
Q 018293          209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  288 (358)
Q Consensus       209 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~  288 (358)
                      ..+.+++|++.+++++++|+.||.|++||++..        ...+..+.+|...|.+++|+|++ .+|++|+.||+|++|
T Consensus       206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~--------~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lw  276 (380)
T 3iz6_a          206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRIT--------SRAVRTYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLF  276 (380)
T ss_dssp             SCEEEEEECSSSCCEEEEEETTSCEEEEETTTT--------CCCCEEECCCSSCCCEEEECTTS-SEEEEECSSSCEEEE
T ss_pred             cCeEEEEeecCCCCEEEEEECCCeEEEEECCCC--------CcceEEECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEE
Confidence            889999998867789999999999999999854        26677889999999999999998 899999999999999


Q ss_pred             ecCCCCceeeEecCC-----CCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          289 DLSNNQPSCIASRNP-----KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       289 d~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      |+++++.........     +...|.+++|+|+|+ +|++|+.||.|++||+.+++.+...
T Consensus       277 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~  336 (380)
T 3iz6_a          277 DMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAEMVLNL  336 (380)
T ss_dssp             ETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             ECCCCcEEEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCceEEEE
Confidence            999987433322211     223488999999999 5889999999999999888766543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.7e-39  Score=268.18  Aligned_cols=242  Identities=19%  Similarity=0.281  Sum_probs=203.9

Q ss_pred             cCC-CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           62 REK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        62 s~~-~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      +|+ +++|++|+.|++|++|++...+..                      .......+.+|...|.+++|+|+ +.+|++
T Consensus        26 ~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------------~~~~~~~~~~h~~~v~~~~~s~d-g~~l~s   82 (319)
T 3frx_A           26 SAGQPNLLLSASRDKTLISWKLTGDDQK----------------------FGVPVRSFKGHSHIVQDCTLTAD-GAYALS   82 (319)
T ss_dssp             CSSCTTEEEEEETTSEEEEEEEEEETTE----------------------EEEEEEEEECCSSCEEEEEECTT-SSEEEE
T ss_pred             cCCCccEEEEecCCccEEEecCCCCCcc----------------------ccccceEEeCCcccEEEEEECCC-CCEEEE
Confidence            675 489999999999999998643221                      12334466789999999999999 679999


Q ss_pred             EEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC
Q 018293          141 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  220 (358)
Q Consensus       141 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  220 (358)
                      |+.|++|++||+++++.+..+.+|...|.+++|+|++ .++++++.|+.|++||++.. .......|...+.++.|.|..
T Consensus        83 ~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~-~~~~~~~h~~~v~~~~~~~~~  160 (319)
T 3frx_A           83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNE  160 (319)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECCC-
T ss_pred             EeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-eEEEEeccCCcEEEEEEccCC
Confidence            9999999999999999999999999999999999998 89999999999999999743 344456788899999999852


Q ss_pred             -----CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          221 -----EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       221 -----~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                           ...+++++.|+.|++||++..         .....+.+|...|.+++|+|++ .+|++|+.||.|++||+++++.
T Consensus       161 ~~~~~~~~l~s~~~d~~i~~wd~~~~---------~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~  230 (319)
T 3frx_A          161 KADDDSVTIISAGNDKMVKAWNLNQF---------QIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKA  230 (319)
T ss_dssp             -----CCEEEEEETTSCEEEEETTTT---------EEEEEECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEE
T ss_pred             CCCCCccEEEEEeCCCEEEEEECCcc---------hhheeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE
Confidence                 348999999999999999876         6677888999999999999998 8999999999999999998874


Q ss_pred             eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          296 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       296 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                        +..+.. ...|.+++|+|++.+ +++++ ++.+++|++..+..+..
T Consensus       231 --~~~~~~-~~~v~~~~~sp~~~~-la~~~-~~~i~v~~~~~~~~~~~  273 (319)
T 3frx_A          231 --MYTLSA-QDEVFSLAFSPNRYW-LAAAT-ATGIKVFSLDPQYLVDD  273 (319)
T ss_dssp             --EEEEEC-CSCEEEEEECSSSSE-EEEEE-TTEEEEEEETTEEEEEE
T ss_pred             --EEEecC-CCcEEEEEEcCCCCE-EEEEc-CCCcEEEEeCcCeeeec
Confidence              444443 467999999999984 76665 45699999987665443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.2e-40  Score=276.78  Aligned_cols=246  Identities=22%  Similarity=0.338  Sum_probs=197.8

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC-CCcEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNIL  138 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l  138 (358)
                      +|+|+|++||+|+.|++|+|||+.++.                         ......+.+|...|.+++|+++ .+.+|
T Consensus        20 ~~s~~g~~lasgs~D~~v~lwd~~~~~-------------------------~~~~~~l~gH~~~V~~v~~~~~~~~~~l   74 (316)
T 3bg1_A           20 QMDYYGTRLATCSSDRSVKIFDVRNGG-------------------------QILIADLRGHEGPVWQVAWAHPMYGNIL   74 (316)
T ss_dssp             EECGGGCEEEEEETTTEEEEEEEETTE-------------------------EEEEEEEECCSSCEEEEEECCGGGSSCE
T ss_pred             eEcCCCCEEEEEeCCCeEEEEEecCCC-------------------------cEEEEEEcCCCccEEEEEeCCCCCCCEE
Confidence            348999999999999999999986432                         1123356689999999999863 35799


Q ss_pred             EEEEcCCeEEEEECCCC--ceeeeecccccceeeEEEcCCC-CcEEEEEeCCCcEEEEEcccCCC---ccceeeecCCee
Q 018293          139 ASASADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTH---SGFKWAVAADVE  212 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~  212 (358)
                      ++|+.|++|++||++++  +....+.+|...|.+++|+|++ ..+|++++.|+.|++||++....   ......|...+.
T Consensus        75 ~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~  154 (316)
T 3bg1_A           75 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCN  154 (316)
T ss_dssp             EEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBC
T ss_pred             EEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcc
Confidence            99999999999999887  3566778899999999999982 27899999999999999987532   222345778899


Q ss_pred             eEEEcCCC----------------CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC---C
Q 018293          213 SLAWDPHA----------------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV---P  273 (358)
Q Consensus       213 ~~~~~~~~----------------~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~---~  273 (358)
                      +++|+|+.                ..++++|+.|+.|++||++....      ......+.+|...|.+++|+|++   .
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~------~~~~~~l~~h~~~V~~v~~sp~~~~~~  228 (316)
T 3bg1_A          155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ------WKEEQKLEAHSDWVRDVAWAPSIGLPT  228 (316)
T ss_dssp             CCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC------EEEEECCBCCSSCEEEEECCCCSSCSC
T ss_pred             eEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc------cceeeecccCCCceEEEEecCCCCCCC
Confidence            99999963                35899999999999999975310      12455678899999999999975   3


Q ss_pred             cEEEEEeCCCcEEEEecCCCCc--eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          274 NLLATGSTDKMVKLWDLSNNQP--SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       274 ~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      .+|++++.|++|++||+++...  .....+..|...|.+++|+|++++ |++++.||.|++|+...
T Consensus       229 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~-las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          229 STIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANI-LAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             CEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCC-EEEEESSSCEEEEEECT
T ss_pred             ceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCE-EEEEcCCCeEEEEEECC
Confidence            6899999999999999976311  111223457789999999999994 89999999999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.2e-39  Score=279.75  Aligned_cols=282  Identities=13%  Similarity=0.162  Sum_probs=224.9

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCC------CCceEeeceeecCCcccceeeecCCccccCC----C---ce
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGG------DPNLYVHHHIIIPAFPLCMAWLDCPLKDREK----G---NF   67 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~---~~   67 (358)
                      ++|+|  +.|+++..++     .+++|+.....      ....+..    ....+.++.|       +|+    +   ++
T Consensus        22 ~~~~~--~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~-------~~~~~~~g~~~~~   83 (397)
T 1sq9_A           22 VSACN--SFTVSCSGDG-----YLKVWDNKLLDNENPKDKSYSHFV----HKSGLHHVDV-------LQAIERDAFELCL   83 (397)
T ss_dssp             EEECS--SEEEEEETTS-----EEEEEESBCCTTCCGGGGEEEEEC----CTTCEEEEEE-------EEEEETTTEEEEE
T ss_pred             EEecC--CeEEEEcCCC-----EEEEEECCCcccccCCCcceEEec----CCCcEEEEEE-------ecccccCCccccE
Confidence            46778  7888887776     78888877653      1111111    2333456666       677    9   99


Q ss_pred             EEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCC-----cccEEEEecC----CCCCcE-
Q 018293           68 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-----TDSVLGLAWN----KEFRNI-  137 (358)
Q Consensus        68 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~----~~~~~~-  137 (358)
                      |++++.||.|++|++.+.+...                      ......+..|     ...|.+++|+    |+ +.+ 
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~  140 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETK----------------------KVIFEKLDLLDSDMKKHSFWALKWGASNDRL-LSHR  140 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTC----------------------CEEEEEECCSCTTGGGSCEEEEEEECCC-----CEE
T ss_pred             EEEEcCCCCEEEEEccCCcccc----------------------cccceeecccccccCCCcEEEEEEeeccCCC-CceE
Confidence            9999999999999998654311                      1112234456     6899999999    98 567 


Q ss_pred             EEEEEcCCeEEEEECCC------Cceee-----ee-------cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC
Q 018293          138 LASASADKQVKIWDVAA------GKCNL-----TL-------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  199 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  199 (358)
                      |++++.||.|++||+.+      ++.+.     .+       ..|...|.+++|+|++  ++++++.||.|++||+++.+
T Consensus       141 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~  218 (397)
T 1sq9_A          141 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR  218 (397)
T ss_dssp             EEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE
T ss_pred             EEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc
Confidence            99999999999999998      66666     66       4488999999999998  89999999999999999887


Q ss_pred             Cccceee---e---cCCeeeEEEcCCCCCeEEEEecC---CeEEEEEcccCCCCCCCCCCCccEEEee------------
Q 018293          200 HSGFKWA---V---AADVESLAWDPHAEHSFVVSLED---GTIKGFDIRTAKSDPDSTSQQSSFTLHA------------  258 (358)
Q Consensus       200 ~~~~~~~---~---~~~i~~~~~~~~~~~~~~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~------------  258 (358)
                      .......   |   ...+.+++|+|+ +.++++++.|   |.|++||+++.         ..+..+..            
T Consensus       219 ~~~~~~~~~~h~~~~~~i~~i~~~~~-~~~l~~~~~d~~~g~i~i~d~~~~---------~~~~~~~~~~~~~~~~~~~~  288 (397)
T 1sq9_A          219 PLYNFESQHSMINNSNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYETEFG---------ERIGSLSVPTHSSQASLGEF  288 (397)
T ss_dssp             EEEEEECCC---CCCCCEEEEEECSS-TTEEEEEEEETTEEEEEEEETTTC---------CEEEEECBC--------CCB
T ss_pred             eeEEEeccccccccCCccceEEECCC-CCEEEEEecCCCCceEEEEECCCC---------cccceeccCccccccccccc
Confidence            7665555   6   889999999995 5689999999   99999999987         67777887            


Q ss_pred             -cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC------CC---------------CceeEEEEEcCC
Q 018293          259 -HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN------PK---------------AGAVFSVAFSED  316 (358)
Q Consensus       259 -~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~---------------~~~v~~~~~~~~  316 (358)
                       |...|.+++|+|++ .+|++++.||.|++||+++++.  +..+.      .|               ...|.+++|+|+
T Consensus       289 ~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~  365 (397)
T 1sq9_A          289 AHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKER--ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK  365 (397)
T ss_dssp             SBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE--EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred             ccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCce--eEEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence             99999999999998 8999999999999999998874  44455      56               899999999999


Q ss_pred             C----------CeEEEEEccCCeEEEEEccCCC
Q 018293          317 S----------PFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       317 ~----------~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      +          + +|++++.||.|++|++.+++
T Consensus       366 g~~~~~~~~~~~-~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          366 GWRSGMGADLNE-SLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TTSBSTTCTTSC-EEEEEETTTEEEEEEEEC--
T ss_pred             cccccccccccc-eEEEecCCCcEEEEEcCCCC
Confidence            8          5 69999999999999998764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.6e-38  Score=275.58  Aligned_cols=265  Identities=19%  Similarity=0.337  Sum_probs=217.3

Q ss_pred             eeecCCcccceeeecCCccccCC-CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCC
Q 018293           42 HIIIPAFPLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS  120 (358)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (358)
                      .......+.+++|       +|+ +++||+|+.||.|++|++........                 ..........+.+
T Consensus       124 ~~~h~~~v~~l~~-------~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------~~~~~~~~~~~~~  179 (430)
T 2xyi_A          124 KINHEGEVNRARY-------MPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------------PSGECQPDLRLRG  179 (430)
T ss_dssp             EEEESSCCSEEEE-------ETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------TTCCCCCSEEEEC
T ss_pred             EEcCCCcEEEEEE-------CCCCCcEEEEECCCCcEEEEECCCcccccC-----------------ccccCCCcEEecC
Confidence            3444555666666       676 78999999999999999975321110                 0011334456668


Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce-------eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEE
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK  193 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  193 (358)
                      |...|++++|+|++..+|++|+.||.|++||+.++..       ...+..|...|.+++|+|++..+|++++.||.|++|
T Consensus       180 h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~  259 (430)
T 2xyi_A          180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW  259 (430)
T ss_dssp             CSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred             CCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence            9999999999999555999999999999999987422       455678999999999999666899999999999999


Q ss_pred             EcccCC---CccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecC
Q 018293          194 DARIST---HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  270 (358)
Q Consensus       194 d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  270 (358)
                      |+++..   .......+...|++++|+|++..++++|+.||.|++||++..        ..++..+..|...|.+++|+|
T Consensus       260 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~--------~~~~~~~~~h~~~v~~i~~sp  331 (430)
T 2xyi_A          260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL--------KLKLHSFESHKDEIFQVQWSP  331 (430)
T ss_dssp             ETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT--------TSCSEEEECCSSCEEEEEECS
T ss_pred             ECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC--------CCCeEEeecCCCCEEEEEECC
Confidence            999873   444445788899999999988778999999999999999975        266788889999999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCCC------------ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          271 LVPNLLATGSTDKMVKLWDLSNNQ------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       271 ~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      ++..+|++++.|+.|++||+....            +..+....+|...|.+++|+|++++++++++.||.|++|++...
T Consensus       332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            987789999999999999998722            23667788899999999999999977999999999999999754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.9e-38  Score=273.80  Aligned_cols=281  Identities=21%  Similarity=0.369  Sum_probs=224.4

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      ++++ +++|++|. ++     .|++|+...+....++..+  .....+.|++|       +|+|++||+|+.||.|+|||
T Consensus       112 ~wS~-~n~lAvgl-d~-----tV~lWd~~tg~~~~~~~~~--~~~~~V~sv~f-------spdg~~lasgs~Dg~v~iWd  175 (420)
T 4gga_A          112 DWSS-GNVLAVAL-DN-----SVYLWSASSGDILQLLQME--QPGEYISSVAW-------IKEGNYLAVGTSSAEVQLWD  175 (420)
T ss_dssp             EECT-TSEEEEEE-TT-----EEEEEETTTCCEEEEEECC--STTCCEEEEEE-------CTTSSEEEEEETTSCEEEEE
T ss_pred             EECC-CCEEEEEe-CC-----EEEEEECCCCCEEEEEEec--CCCCcEEEEEE-------CCCCCEEEEEECCCeEEEEE
Confidence            4565 46777774 66     8999998876333333211  12233456666       89999999999999999999


Q ss_pred             cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC-ceeee
Q 018293           82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-KCNLT  160 (358)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~  160 (358)
                      +.+++.+                           ..+.+|...+.++++++   .+|++|+.|+.+++||.... ..+..
T Consensus       176 ~~~~~~~---------------------------~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~  225 (420)
T 4gga_A          176 VQQQKRL---------------------------RNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVAT  225 (420)
T ss_dssp             TTTTEEE---------------------------EEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             cCCCcEE---------------------------EEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEE
Confidence            9764432                           34567999999999874   48999999999999998865 45677


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc----cceeeecCCeeeEEEcCCCCCeEEEE--ecCCeEE
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS----GFKWAVAADVESLAWDPHAEHSFVVS--LEDGTIK  234 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~--~~dg~i~  234 (358)
                      +.+|...+..+.|+|++ .++++++.|+.+++||...++..    .....+...|.+++|+|.+..+++++  +.|+.|+
T Consensus       226 ~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~  304 (420)
T 4gga_A          226 LSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR  304 (420)
T ss_dssp             EECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEE
T ss_pred             ecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEE
Confidence            88999999999999999 89999999999999999876542    23445778899999999888888765  4799999


Q ss_pred             EEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe--CCCcEEEEecCCCCceeeEecCCCCceeEEEE
Q 018293          235 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS--TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  312 (358)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  312 (358)
                      +||++++         .....+.. ...+.++.|+|++ ..+++++  .|+.|+|||+++++  .+..+.+|.+.|++++
T Consensus       305 iwd~~t~---------~~~~~~~~-~~~v~~~~~~~~~-~~lv~~sg~~d~~I~iwd~~~~~--~v~~l~gH~~~V~~l~  371 (420)
T 4gga_A          305 IWNVCSG---------ACLSAVDA-HSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMA--KVAELKGHTSRVLSLT  371 (420)
T ss_dssp             EEETTTT---------EEEEEEEC-SSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCC--EEEEECCCSSCEEEEE
T ss_pred             EEeCCcc---------ccceeecc-ccceeeeeecCCC-CeEEEEEecCCCEEEEEECCCCc--EEEEEcCCCCCEEEEE
Confidence            9999987         55666654 4578899999998 5555544  69999999999988  5778889999999999


Q ss_pred             EcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          313 FSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       313 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      |+|+|++ |++|+.||+|+|||+.......+
T Consensus       372 ~spdg~~-l~S~s~D~tvriWdv~~~~~~~~  401 (420)
T 4gga_A          372 MSPDGAT-VASAAADETLRLWRCFELDPARR  401 (420)
T ss_dssp             ECTTSSC-EEEEETTTEEEEECCSCSSCC--
T ss_pred             EcCCCCE-EEEEecCCeEEEEECCCCCccch
Confidence            9999995 89999999999999987665544

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=7.1e-39  Score=270.94  Aligned_cols=243  Identities=21%  Similarity=0.291  Sum_probs=197.1

Q ss_pred             CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293           63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  142 (358)
Q Consensus        63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  142 (358)
                      +++++|++|+.|++|++||+...+...                    ........+.+|...|.+++|+|+ +.++++|+
T Consensus        37 ~d~~~l~sgs~D~~v~iWd~~~~~~~~--------------------~~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~s   95 (343)
T 2xzm_R           37 EDSPVLISGSRDKTVMIWKLYEEEQNG--------------------YFGIPHKALTGHNHFVSDLALSQE-NCFAISSS   95 (343)
T ss_dssp             CCCCEEEEEETTSCEEEEEECSSCCSS--------------------BSEEEEEEECCCSSCEEEEEECSS-TTEEEEEE
T ss_pred             CCCCEEEEEcCCCEEEEEECCcCCccc--------------------ccccccchhccCCCceEEEEECCC-CCEEEEEc
Confidence            489999999999999999987533211                    112233456789999999999999 67999999


Q ss_pred             cCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc--ceeeecCCeeeEEEcCCC
Q 018293          143 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDPHA  220 (358)
Q Consensus       143 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~  220 (358)
                      .|++|++||+++++.+..+.+|...|.+++|+|++ .++++++.|+.|++||+.......  ....+...+.+++|+|++
T Consensus        96 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (343)
T 2xzm_R           96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIM  174 (343)
T ss_dssp             TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCC
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccc
Confidence            99999999999999999999999999999999999 899999999999999997432211  112567789999999965


Q ss_pred             C---------CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecC
Q 018293          221 E---------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  291 (358)
Q Consensus       221 ~---------~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~  291 (358)
                      .         .++++++.||.|++||.. .         .....+..|...|.+++|+|++ .+|++|+.||.|++||+.
T Consensus       175 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~---------~~~~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          175 KSANKVQPFAPYFASVGWDGRLKVWNTN-F---------QIRYTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             CSCSCCCSSCCEEEEEETTSEEEEEETT-T---------EEEEEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESS
T ss_pred             ccccccCCCCCEEEEEcCCCEEEEEcCC-C---------ceeEEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECC
Confidence            2         589999999999999943 2         5567788999999999999998 899999999999999995


Q ss_pred             CCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          292 NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       292 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      .... ....+ .+...|.+++|+|+++ +++ ++.|+.|++|++.+++...
T Consensus       244 ~~~~-~~~~~-~~~~~v~~v~~sp~~~-~la-~~~d~~v~iw~~~~~~~~~  290 (343)
T 2xzm_R          244 NLTY-PQREF-DAGSTINQIAFNPKLQ-WVA-VGTDQGVKIFNLMTQSKAP  290 (343)
T ss_dssp             CCSS-CSEEE-ECSSCEEEEEECSSSC-EEE-EEESSCEEEEESSSCCSCS
T ss_pred             CCcc-cceee-cCCCcEEEEEECCCCC-EEE-EECCCCEEEEEeCCCCCCc
Confidence            4432 12222 2345699999999998 465 4568889999998876543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6e-39  Score=275.71  Aligned_cols=282  Identities=14%  Similarity=0.147  Sum_probs=213.9

Q ss_pred             CcccCCC-cEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccC-CCceEEecCCCCeEE
Q 018293            1 MTINPND-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-KGNFMAVGSMEPAIE   78 (358)
Q Consensus         1 l~~~p~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~   78 (358)
                      ++|+|++ ++|+++..++     .+.+|+...+.....+..  ......+.++.|       +| ++++|++|+.||.|+
T Consensus        79 ~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~-------~~~~~~~l~s~~~d~~i~  144 (383)
T 3ei3_B           79 LEWHPTHPTTVAVGSKGG-----DIILWDYDVQNKTSFIQG--MGPGDAITGMKF-------NQFNTNQLFVSSIRGATT  144 (383)
T ss_dssp             EEECSSCTTEEEEEEBTS-----CEEEEETTSTTCEEEECC--CSTTCBEEEEEE-------ETTEEEEEEEEETTTEEE
T ss_pred             EEECCCCCCEEEEEcCCC-----eEEEEeCCCcccceeeec--CCcCCceeEEEe-------CCCCCCEEEEEeCCCEEE
Confidence            4689999 8999998877     788888876533222211  112334446666       78 689999999999999


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN  158 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  158 (358)
                      +||+.+. ..                        .......+|...|.+++|+|+ +.+|++|+.|+.|++||+ +++.+
T Consensus       145 iwd~~~~-~~------------------------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~-~~~~~  197 (383)
T 3ei3_B          145 LRDFSGS-VI------------------------QVFAKTDSWDYWYCCVDVSVS-RQMLATGDSTGRLLLLGL-DGHEI  197 (383)
T ss_dssp             EEETTSC-EE------------------------EEEECCCCSSCCEEEEEEETT-TTEEEEEETTSEEEEEET-TSCEE
T ss_pred             EEECCCC-ce------------------------EEEeccCCCCCCeEEEEECCC-CCEEEEECCCCCEEEEEC-CCCEE
Confidence            9999731 11                        111122346688999999999 679999999999999998 57788


Q ss_pred             eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC---ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEE
Q 018293          159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG  235 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i  235 (358)
                      ..+..|...|.+++|+|++..++++++.|+.|++||+++.+.   ......+...+.+++|+|.++.++++++.|+.|++
T Consensus       198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~i  277 (383)
T 3ei3_B          198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRV  277 (383)
T ss_dssp             EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred             EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence            899999999999999999944999999999999999998432   22234688999999999933458999999999999


Q ss_pred             EEcccCCCCCCCCCCCccEEEeecC-----------------CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceee
Q 018293          236 FDIRTAKSDPDSTSQQSSFTLHAHD-----------------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  298 (358)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~~~~~~~-----------------~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  298 (358)
                      ||+++..         ....+..|.                 ..+..++++|++ .+  +++.|+.|++||+.+++....
T Consensus       278 wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~~~~~  345 (383)
T 3ei3_B          278 YSSYDWS---------KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGGLVHQ  345 (383)
T ss_dssp             EETTBTT---------SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEETTTCCEEEE
T ss_pred             EECCCCc---------cccccccccccccccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEecCCCceeee
Confidence            9999873         333333332                 344456677766 44  777899999999999885333


Q ss_pred             EecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      .....|...+..++|+|+++ +|++|+ ||.|++||+++
T Consensus       346 l~~~~~~~~~~~~~~s~~g~-~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          346 LRDPNAAGIISLNKFSPTGD-VLASGM-GFNILIWNRED  382 (383)
T ss_dssp             ECBTTBCSCCCEEEECTTSS-EEEEEE-TTEEEEEECC-
T ss_pred             ecCCCCCceEEEEEEecCcc-EEEEec-CCcEEEEecCC
Confidence            33333567788889999999 478886 99999999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.6e-38  Score=265.45  Aligned_cols=245  Identities=25%  Similarity=0.405  Sum_probs=206.6

Q ss_pred             ccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           61 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        61 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      |+|++++|++|+.||.|++|++.+++.                           ...+.+|...|.+++|+|+ +++|++
T Consensus        31 ~s~~~~~l~s~~~dg~i~iw~~~~~~~---------------------------~~~~~~h~~~v~~~~~~~~-~~~l~s   82 (312)
T 4ery_A           31 FSPNGEWLASSSADKLIKIWGAYDGKF---------------------------EKTISGHKLGISDVAWSSD-SNLLVS   82 (312)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCE---------------------------EEEECCCSSCEEEEEECTT-SSEEEE
T ss_pred             ECCCCCEEEEeeCCCeEEEEeCCCccc---------------------------chhhccCCCceEEEEEcCC-CCEEEE
Confidence            389999999999999999999865332                           2245579999999999999 679999


Q ss_pred             EEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC
Q 018293          141 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  220 (358)
Q Consensus       141 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  220 (358)
                      |+.|+.|++||+++++++..+.+|...|.+++|+|++ .++++++.|+.|++||+++++.......+...+.+++|+|+ 
T Consensus        83 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-  160 (312)
T 4ery_A           83 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-  160 (312)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-
T ss_pred             ECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC-
Confidence            9999999999999999999999999999999999998 89999999999999999988877666678889999999995 


Q ss_pred             CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 018293          221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  299 (358)
Q Consensus       221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  299 (358)
                      +.++++++.||.|++||+++.         ..+..+ ..+...+..++|+|++ .+|++++.|+.|++||+++++  ...
T Consensus       161 ~~~l~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~--~~~  228 (312)
T 4ery_A          161 GSLIVSSSYDGLCRIWDTASG---------QCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGK--CLK  228 (312)
T ss_dssp             SSEEEEEETTSCEEEEETTTC---------CEEEEECCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTE--EEE
T ss_pred             CCEEEEEeCCCcEEEEECCCC---------ceeeEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCc--EEE
Confidence            558999999999999999876         444444 3456789999999998 899999999999999999887  455


Q ss_pred             ecCCCCceeE--EEEEc-CCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293          300 SRNPKAGAVF--SVAFS-EDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       300 ~~~~~~~~v~--~~~~~-~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                      .+.+|.....  ...++ +++. ++++|+.||.|++||+.+++.+..+..+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~  279 (312)
T 4ery_A          229 TYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHT  279 (312)
T ss_dssp             EECSSCCSSSCCCEEEECSSSC-EEEECCTTSCEEEEETTTCCEEEEECCCS
T ss_pred             EEEecCCceEEEEEEEEeCCCc-EEEEECCCCEEEEEECCCchhhhhhhccC
Confidence            5666654322  23444 5666 58999999999999999988776655443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-39  Score=279.16  Aligned_cols=281  Identities=17%  Similarity=0.290  Sum_probs=227.7

Q ss_pred             CcccCCCc-EEEEEEecCCCceEEEEEEec----cCCCC------CceEeeceee------cCCcccceeeecCCccccC
Q 018293            1 MTINPNDA-VIVCARNEDDVSHLEVYILEE----SDGGD------PNLYVHHHII------IPAFPLCMAWLDCPLKDRE   63 (358)
Q Consensus         1 l~~~p~~~-~l~~~~~~~~~~~~~~~~~~~----~~~~~------~~~~~~~~~~------~~~~~~~~~~~~~~~~~s~   63 (358)
                      ++|+|+++ +|+++..++     .+.+|+.    ..+..      ...+.+....      ....+.++.|       +|
T Consensus        51 ~~~s~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~  118 (425)
T 1r5m_A           51 STWNPLDESILAYGEKNS-----VARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW-------SH  118 (425)
T ss_dssp             EEECSSCTTEEEEEETBT-----EEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE-------CT
T ss_pred             EEECCCCCcEEEEecCCc-----eEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE-------cC
Confidence            46899999 999997776     6777776    44321      1111110000      1223445555       89


Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      ++++|++|+.||.|++||.. +.                           ....+.+|...|.+++|+|+ +.+|++++.
T Consensus       119 ~~~~l~~~~~dg~i~i~~~~-~~---------------------------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~  169 (425)
T 1r5m_A          119 DGNSIVTGVENGELRLWNKT-GA---------------------------LLNVLNFHRAPIVSVKWNKD-GTHIISMDV  169 (425)
T ss_dssp             TSSEEEEEETTSCEEEEETT-SC---------------------------EEEEECCCCSCEEEEEECTT-SSEEEEEET
T ss_pred             CCCEEEEEeCCCeEEEEeCC-CC---------------------------eeeeccCCCccEEEEEECCC-CCEEEEEec
Confidence            99999999999999999932 11                           22244579999999999999 679999999


Q ss_pred             CCeEEEEECCCCceeeeecccccc---------------eeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeec
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHTDK---------------VQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  208 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  208 (358)
                      |+.|++||+.+++.+..+..+...               +.+++|+|++  .+++++.+|.|++||+++.+.......+.
T Consensus       170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~  247 (425)
T 1r5m_A          170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHH  247 (425)
T ss_dssp             TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCS
T ss_pred             CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCC
Confidence            999999999999999888877776               9999999975  58899999999999999988777667788


Q ss_pred             CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEE
Q 018293          209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  288 (358)
Q Consensus       209 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~  288 (358)
                      ..+.+++|+|+ +.++++++.||.|++||+++.         .....+..|...|.+++|+|++  ++++++.|+.|++|
T Consensus       248 ~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~  315 (425)
T 1r5m_A          248 GPISVLEFNDT-NKLLLSASDDGTLRIWHGGNG---------NSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLW  315 (425)
T ss_dssp             SCEEEEEEETT-TTEEEEEETTSCEEEECSSSB---------SCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEE
T ss_pred             CceEEEEECCC-CCEEEEEcCCCEEEEEECCCC---------ccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEE
Confidence            99999999995 459999999999999999987         6778888899999999999986  89999999999999


Q ss_pred             ecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          289 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      |+++++  .+..+..|...|.+++|+|+++ +|++++.||.|++||+.+++
T Consensus       316 d~~~~~--~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          316 SLKQNT--LLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             ETTTTE--EEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHH
T ss_pred             ECCCCc--EeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCc
Confidence            999887  4556667888999999999999 58899999999999998876

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.4e-39  Score=282.21  Aligned_cols=261  Identities=11%  Similarity=0.084  Sum_probs=198.1

Q ss_pred             cccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEE
Q 018293           48 FPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  127 (358)
Q Consensus        48 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  127 (358)
                      .+.+++|.|. ..+++++.+||+|+.||+|+|||+.+.........                ....+...+.+|...|++
T Consensus       209 ~V~~v~wsp~-~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~----------------~~~~p~~~l~~h~~~v~s  271 (524)
T 2j04_B          209 EVWDLKWHEG-CHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK----------------MCEKPSLTLSLADSLITT  271 (524)
T ss_dssp             SEEEEEECSS-CCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE----------------CCCSCSEEECCTTTCEEE
T ss_pred             cEEEEEECCC-CCCCCCCceEEEEecCCeEEEEEcCCCccccccce----------------eecCceEEEEcCCCCEEE
Confidence            3456777431 11234578999999999999999976532210000                001223356789999999


Q ss_pred             EecCCCCCcEEEEEEcCCeEEEEECCCCc-eeeeecccccceeeE--EEcCCCCcEEEEEeCCCcEEEEEcccCCCccce
Q 018293          128 LAWNKEFRNILASASADKQVKIWDVAAGK-CNLTLEHHTDKVQAV--AWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  204 (358)
Q Consensus       128 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  204 (358)
                      ++|+++ . .|++|+.||+|++||+++++ +...+.+|...|.++  .|+|++..+|++++.|++|++||+++.+.....
T Consensus       272 v~~s~~-~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~  349 (524)
T 2j04_B          272 FDFLSP-T-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTT  349 (524)
T ss_dssp             EEESSS-S-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEE
T ss_pred             EEecCC-C-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccc
Confidence            999986 4 89999999999999999764 455688999999999  567765478999999999999999987765545


Q ss_pred             eeecC--CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC
Q 018293          205 WAVAA--DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD  282 (358)
Q Consensus       205 ~~~~~--~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d  282 (358)
                      ..+..  .+.+++|+|++ ..+++++.|+.|++||++..         .....+.+|...|++++|+|++ .+|++|+.|
T Consensus       350 ~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~---------~~~~~l~gH~~~V~sva~Sp~g-~~l~Sgs~D  418 (524)
T 2j04_B          350 VSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAA---------FAVHPLVSRETTITAIGVSRLH-PMVLAGSAD  418 (524)
T ss_dssp             EEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCT---------TCCEEEEECSSCEEEEECCSSC-CBCEEEETT
T ss_pred             ccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECccc---------ccceeeecCCCceEEEEeCCCC-CeEEEEECC
Confidence            55543  47899999964 47999999999999999987         6667888999999999999998 789999999


Q ss_pred             CcEEEEecCCCCc------------------------------------------eeeEecCCCCceeEEEEEcCCCC--
Q 018293          283 KMVKLWDLSNNQP------------------------------------------SCIASRNPKAGAVFSVAFSEDSP--  318 (358)
Q Consensus       283 g~i~i~d~~~~~~------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~--  318 (358)
                      |+|++||+.....                                          .....+.+|...|.+++|+|+++  
T Consensus       419 gtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~  498 (524)
T 2j04_B          419 GSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGG  498 (524)
T ss_dssp             TEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTT
T ss_pred             CEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCcc
Confidence            9999998632100                                          01223345778899999999953  


Q ss_pred             eEEEEEccCCeEEEEEccCC
Q 018293          319 FVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       319 ~~l~~~~~dg~i~vw~~~~~  338 (358)
                      .++|+|+.||.|+||++.-.
T Consensus       499 ~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          499 KCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             TEEEEECTTSEEEEEECSCC
T ss_pred             HHHHhhccCceEEEEEcccc
Confidence            25999999999999998653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3e-38  Score=268.87  Aligned_cols=309  Identities=11%  Similarity=0.108  Sum_probs=210.4

Q ss_pred             CcccCCCcEEEEEEecCCCc--eEEEEEEeccCCCCC---ceEeeceeecC---CcccceeeecC--CccccCCCceEEe
Q 018293            1 MTINPNDAVIVCARNEDDVS--HLEVYILEESDGGDP---NLYVHHHIIIP---AFPLCMAWLDC--PLKDREKGNFMAV   70 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~--~~~~s~~~~~l~~   70 (358)
                      ++|+|++++|++|+.+....  ..++.+|+...+...   .+...+...+.   ..+.++.+-.-  ....++++..|++
T Consensus        20 v~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s   99 (365)
T 4h5i_A           20 AKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTKITQ   99 (365)
T ss_dssp             EEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHHHHH
T ss_pred             EEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccEEEE
Confidence            47999999999986533111  124555554432211   12222222221   12334432100  0001222333445


Q ss_pred             cCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE--EEEcCCeEE
Q 018293           71 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA--SASADKQVK  148 (358)
Q Consensus        71 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~--s~~~dg~v~  148 (358)
                      |+.|+.+++|++..........                  ..........+...+.+++|+|+ +++++  +++.|++|+
T Consensus       100 ~~~d~~~r~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~v~fSpD-g~~la~as~~~d~~i~  160 (365)
T 4h5i_A          100 GKGNKHLRKFKYDKVNDQLEFL------------------TSVDFDASTNADDYTKLVYISRE-GTVAAIASSKVPAIMR  160 (365)
T ss_dssp             TSCCCCEEEEEEETTTTEEEEE------------------EEECSSCCCCTTCCEEEEEECTT-SSCEEEEESCSSCEEE
T ss_pred             ecCCCcEEEEEecCCCceEEEe------------------eeeceeecCCcccCEEEEEEcCC-CCEEEEEECCCCCEEE
Confidence            5678899999987543321110                  01111122345667999999999 45655  445789999


Q ss_pred             EEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc--ceeeecCCeeeEEEcCCCCCeEEE
Q 018293          149 IWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDPHAEHSFVV  226 (358)
Q Consensus       149 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~  226 (358)
                      +||+++++++..+. |...|.+++|+|++ .++++++ ++.+.+|+..+++...  ....+...+.+++|+|++ ..+++
T Consensus       161 iwd~~~~~~~~~~~-~~~~V~~v~fspdg-~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~  236 (365)
T 4h5i_A          161 IIDPSDLTEKFEIE-TRGEVKDLHFSTDG-KVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADD-TVLIA  236 (365)
T ss_dssp             EEETTTTEEEEEEE-CSSCCCEEEECTTS-SEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT-EEEEE
T ss_pred             EeECCCCcEEEEeC-CCCceEEEEEccCC-ceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC-CEEEE
Confidence            99999999988886 77889999999999 8888887 4556777766665432  223466789999999965 57888


Q ss_pred             EecCC----eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe-c
Q 018293          227 SLEDG----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-R  301 (358)
Q Consensus       227 ~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~  301 (358)
                      ++.|+    .++.||+.......     .....+..|..+|++++|+|++ ++|++|+.|+.|+|||+++++  ++.. .
T Consensus       237 ~s~d~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~--~~~~~~  308 (365)
T 4h5i_A          237 ASLKKGKGIVLTKISIKSGNTSV-----LRSKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLS--MSKIFK  308 (365)
T ss_dssp             EEESSSCCEEEEEEEEETTEEEE-----EEEEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE--EEEEET
T ss_pred             EecCCcceeEEeecccccceecc-----eeeeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCc--EEEEec
Confidence            87776    68889987652100     2245677889999999999998 899999999999999999987  4544 5


Q ss_pred             CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       302 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      .+|..+|++++|+|||+ +||+|+.|++|+||++......
T Consensus       309 ~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~~~~~  347 (365)
T 4h5i_A          309 QAHSFAITEVTISPDST-YVASVSAANTIHIIKLPLNYAN  347 (365)
T ss_dssp             TSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCTTTTC
T ss_pred             CcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCCCCcC
Confidence            78999999999999999 5999999999999999755433

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-38  Score=269.76  Aligned_cols=282  Identities=13%  Similarity=0.164  Sum_probs=228.9

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|+|++++|+++..++     .+.+|+...+.....+..|    ...+.++.|       +|++++|++++.||.|++|
T Consensus        38 ~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~h----~~~v~~~~~-------~~~~~~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           38 VKYNKEGDLLFSCSKDS-----SASVWYSLNGERLGTLDGH----TGTIWSIDV-------DCFTKYCVTGSADYSIKLW  101 (369)
T ss_dssp             EEECTTSCEEEEEESSS-----CEEEEETTTCCEEEEECCC----SSCEEEEEE-------CTTSSEEEEEETTTEEEEE
T ss_pred             EEEcCCCCEEEEEeCCC-----EEEEEeCCCchhhhhhhhc----CCcEEEEEE-------cCCCCEEEEEeCCCeEEEE
Confidence            47899999999998777     7888887765333333223    233345555       8999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC-----CeEEEEECCCC
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD-----KQVKIWDVAAG  155 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~  155 (358)
                      |+.+++...                           .+. |...|.+++|+|+ +.++++++.+     +.|++||+...
T Consensus       102 d~~~~~~~~---------------------------~~~-~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g~i~~~d~~~~  152 (369)
T 3zwl_B          102 DVSNGQCVA---------------------------TWK-SPVPVKRVEFSPC-GNYFLAILDNVMKNPGSINIYEIERD  152 (369)
T ss_dssp             ETTTCCEEE---------------------------EEE-CSSCEEEEEECTT-SSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred             ECCCCcEEE---------------------------Eee-cCCCeEEEEEccC-CCEEEEecCCccCCCCEEEEEEecCC
Confidence            997644332                           122 7788999999999 6799999998     99999999765


Q ss_pred             c-----------eeeeeccccc--ceeeEEEcCCCCcEEEEEeCCCcEEEEEccc-CCCccceeeecCCeeeEEEcCCCC
Q 018293          156 K-----------CNLTLEHHTD--KVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSGFKWAVAADVESLAWDPHAE  221 (358)
Q Consensus       156 ~-----------~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~  221 (358)
                      .           ....+..|..  .+.+++|+|++ .++++++.||.|++||+++ .........+...+.+++|+|+ +
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~  230 (369)
T 3zwl_B          153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPD-L  230 (369)
T ss_dssp             TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTT-S
T ss_pred             ccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCC-C
Confidence            4           2334444555  89999999998 8999999999999999998 4555555668889999999995 5


Q ss_pred             CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC--------------cEEE
Q 018293          222 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK--------------MVKL  287 (358)
Q Consensus       222 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg--------------~i~i  287 (358)
                      .++++++.||.|++||+++.         .....+. +...+.+++|+|++ .++++++.++              .+++
T Consensus       231 ~~l~~~~~d~~i~v~d~~~~---------~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~  299 (369)
T 3zwl_B          231 TYFITSSRDTNSFLVDVSTL---------QVLKKYE-TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARF  299 (369)
T ss_dssp             SEEEEEETTSEEEEEETTTC---------CEEEEEE-CSSCEEEEEECSSS-SEEEEEECCC-------------CEEEE
T ss_pred             CEEEEecCCceEEEEECCCC---------ceeeeec-CCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEE
Confidence            68999999999999999886         5555555 77889999999998 8899988888              8999


Q ss_pred             EecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          288 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       288 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      ||..+++  ....+..|...|.+++|+|+++ +|++++.||.|++|++.++....+
T Consensus       300 ~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~  352 (369)
T 3zwl_B          300 YHKIFEE--EIGRVQGHFGPLNTVAISPQGT-SYASGGEDGFIRLHHFEKSYFDFK  352 (369)
T ss_dssp             EETTTCC--EEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEEECHHHHTCC
T ss_pred             EecCCCc--chhheecccCcEEEEEECCCCC-EEEEEcCCCeEEEEECccccchhH
Confidence            9999988  5666778999999999999999 589999999999999987665443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-39  Score=279.60  Aligned_cols=284  Identities=11%  Similarity=0.204  Sum_probs=205.4

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCC--CCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE   78 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~   78 (358)
                      ++|+|++++|+++..++     .+.+|+...+  .....+..|    ...+.++.|       +|++++|++|+.||.|+
T Consensus        17 ~~~s~~g~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~-------s~~~~~l~s~s~d~~v~   80 (377)
T 3dwl_C           17 HAFNSQRTEFVTTTATN-----QVELYEQDGNGWKHARTFSDH----DKIVTCVDW-------APKSNRIVTCSQDRNAY   80 (377)
T ss_dssp             CEECSSSSEEECCCSSS-----CBCEEEEETTEEEECCCBCCC----SSCEEEEEE-------CTTTCCEEEEETTSSEE
T ss_pred             EEECCCCCEEEEecCCC-----EEEEEEccCCceEEEEEEecC----CceEEEEEE-------eCCCCEEEEEeCCCeEE
Confidence            57999999999997765     5566665543  112222222    233345555       89999999999999999


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc--
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK--  156 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--  156 (358)
                      +||+.+++..                        .....+.+|...|.+++|+|+ +.+|++++.|+.|++||+++++  
T Consensus        81 vwd~~~~~~~------------------------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~  135 (377)
T 3dwl_C           81 VYEKRPDGTW------------------------KQTLVLLRLNRAATFVRWSPN-EDKFAVGSGARVISVCYFEQENDW  135 (377)
T ss_dssp             EC------CC------------------------CCEEECCCCSSCEEEEECCTT-SSCCEEEESSSCEEECCC-----C
T ss_pred             EEEcCCCCce------------------------eeeeEecccCCceEEEEECCC-CCEEEEEecCCeEEEEEECCcccc
Confidence            9999865411                        122345579999999999999 6799999999999999999887  


Q ss_pred             -eeeeecc-cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC------------------CccceeeecCCeeeEEE
Q 018293          157 -CNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST------------------HSGFKWAVAADVESLAW  216 (358)
Q Consensus       157 -~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------------~~~~~~~~~~~i~~~~~  216 (358)
                       ....+.. |...|.+++|+|++ .+|++++.|+.|++||++...                  ..... .|...|.+++|
T Consensus       136 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~  213 (377)
T 3dwl_C          136 WVSKHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGF  213 (377)
T ss_dssp             CCCEEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEE
T ss_pred             eeeeEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEE
Confidence             4677777 99999999999998 899999999999999986322                  22222 67788999999


Q ss_pred             cCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce
Q 018293          217 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  296 (358)
Q Consensus       217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  296 (358)
                      +|+ +.++++++.||.|++||+++.....     ..+..+..|...|.+++|+|++ .+|++|+.++.+ +|+.......
T Consensus       214 sp~-~~~l~~~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~  285 (377)
T 3dwl_C          214 SPS-GNALAYAGHDSSVTIAYPSAPEQPP-----RALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWA  285 (377)
T ss_dssp             CTT-SSCEEEEETTTEEC-CEECSTTSCE-----EECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---C
T ss_pred             CCC-CCEEEEEeCCCcEEEEECCCCCCcc-----eeeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceE
Confidence            995 4589999999999999999872100     1167788899999999999998 888888766555 7766522100


Q ss_pred             e----------------------------e------E----------------ecCCCCceeEEEEEcCCCCe---EEEE
Q 018293          297 C----------------------------I------A----------------SRNPKAGAVFSVAFSEDSPF---VLAI  323 (358)
Q Consensus       297 ~----------------------------~------~----------------~~~~~~~~v~~~~~~~~~~~---~l~~  323 (358)
                      .                            .      .                ....|...|+++++.+....   .|++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s  365 (377)
T 3dwl_C          286 HTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTS  365 (377)
T ss_dssp             CSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEE
T ss_pred             EEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEe
Confidence            0                            0      0                01138899999998765432   4899


Q ss_pred             EccCCeEEEEEc
Q 018293          324 GGSKGKLEIWDT  335 (358)
Q Consensus       324 ~~~dg~i~vw~~  335 (358)
                      |+.||.|++||+
T Consensus       366 ~g~Dg~i~iWdl  377 (377)
T 3dwl_C          366 SGTDGRVVLWTL  377 (377)
T ss_dssp             EETTSEEEEECC
T ss_pred             ecCCCcEEEecC
Confidence            999999999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-38  Score=266.88  Aligned_cols=239  Identities=22%  Similarity=0.358  Sum_probs=189.6

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceecccccc--CCCcccEEEEecCCCCCcEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKK--GSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      +|+  +||+|+.|+.|++||+......                         ....+  .+|...|.+++|+|+ +.+|+
T Consensus        23 s~~--~las~~~D~~i~lw~~~~~~~~-------------------------~~~~~~~~~h~~~v~~v~~sp~-~~~la   74 (330)
T 2hes_X           23 SQG--ILATGSTDRKIKLVSVKYDDFT-------------------------LIDVLDETAHKKAIRSVAWRPH-TSLLA   74 (330)
T ss_dssp             ETT--EEEEEESSSCEEEEECSSSCCE-------------------------EEEEECTTCCCSCEEEEEECTT-SSEEE
T ss_pred             CCC--EEEEEcCCCEEEEEEecCCCeE-------------------------EEEEEecCCccCCEEEEEECCC-CCEEE
Confidence            665  9999999999999999743211                         11112  249999999999999 67999


Q ss_pred             EEEcCCeEEEEECCC-------CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC----Cccceeeec
Q 018293          140 SASADKQVKIWDVAA-------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST----HSGFKWAVA  208 (358)
Q Consensus       140 s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~  208 (358)
                      +|+.|++|++||++.       .+++..+.+|...|.+++|+|++ ++|++++.|++|++||++...    .......|.
T Consensus        75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~  153 (330)
T 2hes_X           75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQEHS  153 (330)
T ss_dssp             EEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCS
T ss_pred             EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCC
Confidence            999999999999853       35667788999999999999998 899999999999999995432    223345688


Q ss_pred             CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC-CcEEEEEeCCCcEEE
Q 018293          209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV-PNLLATGSTDKMVKL  287 (358)
Q Consensus       209 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~~l~~~~~dg~i~i  287 (358)
                      ..|.+++|+|+ +.++++++.|+.|++||.+...       ..++..+.+|...|.+++|+|++ ..+|++|+.|++|++
T Consensus       154 ~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~i  225 (330)
T 2hes_X          154 QDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDD-------WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV  225 (330)
T ss_dssp             SCEEEEEECSS-SSEEEEEETTSCEEEEEEETTE-------EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEE
T ss_pred             CceEEEEECCC-CCEEEEEcCCCeEEEEECCCCC-------eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEE
Confidence            89999999995 5699999999999999987642       14567888999999999999983 268999999999999


Q ss_pred             EecCCCCc------eeeEecCC-CCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          288 WDLSNNQP------SCIASRNP-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       288 ~d~~~~~~------~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      ||++....      .+...+.. |...|.+++|++++  +|++++.||.|++|+..+++
T Consensus       226 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          226 WKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             EEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTE
T ss_pred             EEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCc
Confidence            99976421      23344444 88999999999776  48899999999999998763

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5.6e-38  Score=265.80  Aligned_cols=257  Identities=20%  Similarity=0.303  Sum_probs=212.4

Q ss_pred             cccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEE
Q 018293           48 FPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  127 (358)
Q Consensus        48 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  127 (358)
                      .+.++.|       +|++++|++|+.||.|++||+.+....                       ......+.+|...|++
T Consensus        13 ~v~~~~~-------~~~~~~l~~~~~dg~i~iw~~~~~~~~-----------------------~~~~~~~~~~~~~v~~   62 (351)
T 3f3f_A           13 LVHDVVY-------DFYGRHVATCSSDQHIKVFKLDKDTSN-----------------------WELSDSWRAHDSSIVA   62 (351)
T ss_dssp             CEEEEEE-------CSSSSEEEEEETTSEEEEEEECSSSCC-----------------------EEEEEEEECCSSCEEE
T ss_pred             ceeEEEE-------cCCCCEEEEeeCCCeEEEEECCCCCCc-----------------------ceecceeccCCCcEEE
Confidence            3446655       899999999999999999999753321                       2233455689999999


Q ss_pred             EecCCC-CCcEEEEEEcCCeEEEEECCCC---------ceeeeecccccceeeEEEcCC--CCcEEEEEeCCCcEEEEEc
Q 018293          128 LAWNKE-FRNILASASADKQVKIWDVAAG---------KCNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDA  195 (358)
Q Consensus       128 ~~~~~~-~~~~l~s~~~dg~v~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~  195 (358)
                      ++|+|. ++.+|++|+.||.|++||++++         +.+..+..|...|.+++|+|+  + .++++++.||.|++||+
T Consensus        63 ~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~  141 (351)
T 3f3f_A           63 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDA  141 (351)
T ss_dssp             EEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEEC
T ss_pred             EEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecC
Confidence            999994 2679999999999999999887         557788889999999999999  7 89999999999999999


Q ss_pred             ccCCCcccee-------------eecCCeeeEEEcCC--CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecC
Q 018293          196 RISTHSGFKW-------------AVAADVESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD  260 (358)
Q Consensus       196 ~~~~~~~~~~-------------~~~~~i~~~~~~~~--~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  260 (358)
                      ++.+......             .+...+.+++|+|+  ++..+++++.++.+.+|+......       .....+.+|.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~h~  214 (351)
T 3f3f_A          142 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL-------HVAAKLPGHK  214 (351)
T ss_dssp             SSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE-------EEEEECCCCC
T ss_pred             CChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce-------eeeeecCCCC
Confidence            8877554322             35677999999996  467999999999998887776521       3466778899


Q ss_pred             CceeEEEecCCCC---cEEEEEeCCCcEEEEecCCCC-------------------------------------------
Q 018293          261 KAVCTISYNPLVP---NLLATGSTDKMVKLWDLSNNQ-------------------------------------------  294 (358)
Q Consensus       261 ~~i~~i~~~~~~~---~~l~~~~~dg~i~i~d~~~~~-------------------------------------------  294 (358)
                      ..|++++|+|+++   .+|++|+.||.|++||++...                                           
T Consensus       215 ~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (351)
T 3f3f_A          215 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNL  294 (351)
T ss_dssp             SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSE
T ss_pred             cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccc
Confidence            9999999999863   699999999999999998742                                           


Q ss_pred             -ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          295 -PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       295 -~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                       ...+..+.+|...|++++|+|++++ |++++.||.|++|++.+++.+..
T Consensus       295 ~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~v~iw~~~~~~~~~~  343 (351)
T 3f3f_A          295 QVELLSEHDDHNGEVWSVSWNLTGTI-LSSAGDDGKVRLWKATYSNEFKC  343 (351)
T ss_dssp             EEEEEEEECTTSSCEEEEEECSSSCC-EEEEETTSCEEEEEECTTSCEEE
T ss_pred             cccEEEEEecccccEEEEEEcCCCCE-EEEecCCCcEEEEecCcCcchhh
Confidence             1356667889999999999999994 89999999999999998876543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2e-37  Score=261.83  Aligned_cols=286  Identities=18%  Similarity=0.289  Sum_probs=216.3

Q ss_pred             CcccCC-CcEEEEEEecCCCceEEEEEEeccCCCCCc-eEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293            1 MTINPN-DAVIVCARNEDDVSHLEVYILEESDGGDPN-LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE   78 (358)
Q Consensus         1 l~~~p~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~   78 (358)
                      |+|+|+ +++|++|+.++     .|.+|+........ .....-......+.++.|       +|++++|++|+.|+.|+
T Consensus        44 v~~sp~~~~~l~S~s~D~-----~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~-------s~dg~~l~s~~~d~~i~  111 (340)
T 4aow_A           44 IATTPQFPDMILSASRDK-----TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI-------SSDGQFALSGSWDGTLR  111 (340)
T ss_dssp             EEECTTCTTEEEEEETTS-----CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEE-------CTTSSEEEEEETTSEEE
T ss_pred             EEEeCCCCCEEEEEcCCC-----eEEEEECCCCCcccceeeEEEeCCCCCEEEEEE-------CCCCCEEEEEcccccce
Confidence            478998 57888887665     55666654432211 111111112333445555       89999999999999999


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce-
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-  157 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-  157 (358)
                      +|+........                           ....+...+..+.++++ +.+|++|+.|+.+++||+..... 
T Consensus       112 ~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~~~~~d~~~~~~~  163 (340)
T 4aow_A          112 LWDLTTGTTTR---------------------------RFVGHTKDVLSVAFSSD-NRQIVSGSRDKTIKLWNTLGVCKY  163 (340)
T ss_dssp             EEETTTTEEEE---------------------------EEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECTTSCEEE
T ss_pred             EEeecccceee---------------------------eecCCCCceeEEEEeec-CccceeecCCCeEEEEEeCCCceE
Confidence            99987533222                           23357778889999998 67899999999999999876543 


Q ss_pred             eeeecccccceeeEEEcCCCC-cEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEE
Q 018293          158 NLTLEHHTDKVQAVAWNHHSP-QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF  236 (358)
Q Consensus       158 ~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~  236 (358)
                      .....+|...+..++|++++. .++++++.|+.|++||+++.+.......+...|.+++|+|+ +.++++|+.||.|++|
T Consensus       164 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~Dg~i~iw  242 (340)
T 4aow_A          164 TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD-GSLCASGGKDGQAMLW  242 (340)
T ss_dssp             EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEETTCEEEEE
T ss_pred             EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCC-CCEEEEEeCCCeEEEE
Confidence            445567899999999998753 46788999999999999998877767788999999999995 5699999999999999


Q ss_pred             EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCcee-------eEecCCCCceeE
Q 018293          237 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC-------IASRNPKAGAVF  309 (358)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-------~~~~~~~~~~v~  309 (358)
                      |+++.         ..+..+.. ...+.++.|+|++  .+++++.|+.|++||+++.....       ......|...|+
T Consensus       243 d~~~~---------~~~~~~~~-~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~  310 (340)
T 4aow_A          243 DLNEG---------KHLYTLDG-GDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCT  310 (340)
T ss_dssp             ETTTT---------EEEEEEEC-SSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEE
T ss_pred             EeccC---------ceeeeecC-CceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEE
Confidence            99986         55666654 4679999999976  45566779999999998765321       122346788999


Q ss_pred             EEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          310 SVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       310 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      +++|+|++++ |++|+.||.|+|||+.+|++
T Consensus       311 ~l~~s~dg~~-l~sgs~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          311 SLAWSADGQT-LFAGYTDNLVRVWQVTIGTR  340 (340)
T ss_dssp             EEEECTTSSE-EEEEETTSCEEEEEEEC---
T ss_pred             EEEECCCCCE-EEEEeCCCEEEEEeCCCcCC
Confidence            9999999995 89999999999999999863

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-38  Score=260.94  Aligned_cols=278  Identities=18%  Similarity=0.217  Sum_probs=223.6

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++| |+++.|+++..++     .+.+|+.........+..|    ...+.++.|       +|++++|++|+.||.|++|
T Consensus        24 ~~~-~~~~~l~s~~~dg-----~v~vw~~~~~~~~~~~~~~----~~~v~~~~~-------~~~~~~l~~~~~dg~i~~~   86 (313)
T 3odt_A           24 VVA-VDDSKVASVSRDG-----TVRLWSKDDQWLGTVVYTG----QGFLNSVCY-------DSEKELLLFGGKDTMINGV   86 (313)
T ss_dssp             EEE-EETTEEEEEETTS-----EEEEEEESSSEEEEEEEEC----SSCEEEEEE-------ETTTTEEEEEETTSCEEEE
T ss_pred             EEe-cCCCEEEEEEcCC-----cEEEEECCCCEEEEEeecC----CccEEEEEE-------CCCCCEEEEecCCCeEEEE
Confidence            356 8899999998777     7888887654222223222    334445555       8999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      ++......                        .....+.+|...|.+++|.   +.++++++.||.|++||  .++....
T Consensus        87 ~~~~~~~~------------------------~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~  137 (313)
T 3odt_A           87 PLFATSGE------------------------DPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYN  137 (313)
T ss_dssp             ETTCCTTS------------------------CC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEE
T ss_pred             EeeecCCC------------------------CcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEe
Confidence            99753322                        2233456799999999994   45899999999999999  6778888


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee-ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR  239 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~  239 (358)
                      +..|...+.++.|.|..+..+++++.||.|++||...  ....... +...+.+++|+|++.  +++++.||.|++||++
T Consensus       138 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~  213 (313)
T 3odt_A          138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMH  213 (313)
T ss_dssp             EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--EEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETT
T ss_pred             cccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--eEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECC
Confidence            8899999999999983338999999999999999432  2222223 778899999999543  8999999999999999


Q ss_pred             cCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCe
Q 018293          240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF  319 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  319 (358)
                      +.         ..+..+..|...|.+++|+|++  .|++++.||.|++||+++++  ....+..|...|.+++|+|+++ 
T Consensus       214 ~~---------~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~-  279 (313)
T 3odt_A          214 TG---------DVLRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGS--LKQVITLPAISIWSVDCMSNGD-  279 (313)
T ss_dssp             TC---------CEEEEEECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCC--EEEEEECSSSCEEEEEECTTSC-
T ss_pred             ch---------hhhhhhhcCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCc--eeEEEeccCceEEEEEEccCCC-
Confidence            87         7788889999999999999987  48899999999999999988  4566677888999999999998 


Q ss_pred             EEEEEccCCeEEEEEccCCCcccc
Q 018293          320 VLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       320 ~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                       +++++.||.|++||+.+++.+..
T Consensus       280 -~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          280 -IIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             -EEEEETTSCEEEEESCGGGCCC-
T ss_pred             -EEEEeCCCcEEEEeCCCCceeeh
Confidence             44688999999999998776543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-38  Score=269.01  Aligned_cols=247  Identities=23%  Similarity=0.355  Sum_probs=205.1

Q ss_pred             ccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC-CcEEE
Q 018293           61 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILA  139 (358)
Q Consensus        61 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~  139 (358)
                      |+|++++||+|+.||.|+|||+...                         .......+.+|...|++++|+++. +.+|+
T Consensus        19 ~s~~~~~l~~~~~dg~i~iw~~~~~-------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~   73 (379)
T 3jrp_A           19 LDYYGKRLATCSSDKTIKIFEVEGE-------------------------THKLIDTLTGHEGPVWRVDWAHPKFGTILA   73 (379)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETT-------------------------EEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred             EcCCCCEEEEEECCCcEEEEecCCC-------------------------cceeeeEecCCCCcEEEEEeCCCCCCCEEE
Confidence            3899999999999999999999621                         123334566899999999998652 56999


Q ss_pred             EEEcCCeEEEEECCCCc--eeeeecccccceeeEEEcCC--CCcEEEEEeCCCcEEEEEcccCCCcc--ceeeecCCeee
Q 018293          140 SASADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVES  213 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~  213 (358)
                      +|+.||.|++||+.+++  .+..+..|...|.+++|+|+  + .++++++.|+.|++||++......  ....+...+.+
T Consensus        74 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~  152 (379)
T 3jrp_A           74 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS  152 (379)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEE
T ss_pred             EeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEE
Confidence            99999999999999987  67788889999999999999  7 899999999999999999875433  34467889999


Q ss_pred             EEEcCC------------CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC--CcEEEEE
Q 018293          214 LAWDPH------------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--PNLLATG  279 (358)
Q Consensus       214 ~~~~~~------------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~l~~~  279 (358)
                      ++|+|.            ++.++++++.||.|++||++.....     ......+..|...|.+++|+|++  +.+|+++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~  227 (379)
T 3jrp_A          153 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSPTVLLRSYLASV  227 (379)
T ss_dssp             EEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             EEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc-----eeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence            999995            4679999999999999999876321     12445677899999999999993  3899999


Q ss_pred             eCCCcEEEEecCCCCce---eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          280 STDKMVKLWDLSNNQPS---CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       280 ~~dg~i~i~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      +.||.|++||++++...   .......|...|.+++|+|++++ |++++.||.|++|++..+.
T Consensus       228 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          228 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC-EEEEESSSSEEEEEEEETT
T ss_pred             eCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCE-EEEecCCCcEEEEeCCCCC
Confidence            99999999999986422   23333458889999999999995 8889999999999998543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.9e-38  Score=276.85  Aligned_cols=285  Identities=15%  Similarity=0.202  Sum_probs=206.9

Q ss_pred             CcccCC-CcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccC-CCceEEecCCCCeEE
Q 018293            1 MTINPN-DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-KGNFMAVGSMEPAIE   78 (358)
Q Consensus         1 l~~~p~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~   78 (358)
                      |+|+|. +++|++|..++     .|.+|+...+....+...  ......+.++.|       +| ++++|++|+.||+|+
T Consensus       125 l~~~P~~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~--~gH~~~V~~l~f-------~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          125 LAWHPTHPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKG--IGAGGSITGLKF-------NPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             EEECSSCTTCEEEEETTS-----CEEEECSSCCSCCEEECC--CSSSCCCCEEEE-------CSSCTTEEEEECSSSCEE
T ss_pred             EEEeCCCCCEEEEEeCCC-----EEEEEECCCCCceeEEEc--cCCCCCEEEEEE-------eCCCCCEEEEEeCCCEEE
Confidence            578995 56888887776     778888765433332211  112334457666       66 689999999999999


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN  158 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  158 (358)
                      +||+.+...                         ........+...+.+++|+|+ +.+|++|+.||.|++||++ ++.+
T Consensus       191 iwd~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd~~-~~~~  243 (435)
T 4e54_B          191 LQDFKGNIL-------------------------RVFASSDTINIWFCSLDVSAS-SRMVVTGDNVGNVILLNMD-GKEL  243 (435)
T ss_dssp             EEETTSCEE-------------------------EEEECCSSCSCCCCCEEEETT-TTEEEEECSSSBEEEEESS-SCBC
T ss_pred             EeeccCCce-------------------------eEEeccCCCCccEEEEEECCC-CCEEEEEeCCCcEeeeccC-ccee
Confidence            999864211                         111122235567889999999 6799999999999999986 4667


Q ss_pred             eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc---ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEE
Q 018293          159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG  235 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i  235 (358)
                      ..+.+|...|.+++|+|++..++++++.|+.|++||++..+...   ....|...|.+++|+|+ +.+|++++.||.|++
T Consensus       244 ~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spd-g~~l~s~~~D~~i~i  322 (435)
T 4e54_B          244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPD-GARLLTTDQKSEIRV  322 (435)
T ss_dssp             CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTT-SSEEEEEESSSCEEE
T ss_pred             EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCC-CCeeEEEcCCCEEEE
Confidence            78889999999999999987789999999999999998766433   23467889999999995 558999999999999


Q ss_pred             EEcccCCCCCCCCCCCccEEEeecCC------ceeEEEecCCCCcEEEEEe------------CCCcEEEEecCCCCcee
Q 018293          236 FDIRTAKSDPDSTSQQSSFTLHAHDK------AVCTISYNPLVPNLLATGS------------TDKMVKLWDLSNNQPSC  297 (358)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~~~~~~~~------~i~~i~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~  297 (358)
                      ||+++.         .....+..|..      .+....|+|++ .++++++            .++.|++||..+++...
T Consensus       323 wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~  392 (435)
T 4e54_B          323 YSASQW---------DCPLGLIPHPHRHFQHLTPIKAAWHPRY-NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC  392 (435)
T ss_dssp             EESSSS---------SSEEEECCCCCCCCSSSCCCBCEECSSS-SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEE
T ss_pred             EECCCC---------ccceEEecccccccccceeEEEEEcCCC-CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEE
Confidence            999987         34444443321      12334566655 3444432            34679999999987422


Q ss_pred             eEecCCCCceeEEE-EEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          298 IASRNPKAGAVFSV-AFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       298 ~~~~~~~~~~v~~~-~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                       ....+|...|.++ +|+|+|++ |++|+ |+.|+||++++++.
T Consensus       393 -~l~~~~~~~v~s~~~fspdg~~-lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          393 -QLYDPESSGISSLNEFNPMGDT-LASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             -EECCSSCCCCCCEEEECTTSSC-EEEEC-SSEEEECCCC----
T ss_pred             -EEeCCCCCcEEEEEEECCCCCE-EEEEc-CCcEEEEECCcCee
Confidence             2345677888887 69999994 77765 88999999998764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-38  Score=275.13  Aligned_cols=291  Identities=12%  Similarity=0.155  Sum_probs=228.7

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|+|+++.|+++..++     .+.+|+... .....+..|    ...+.++.|       +|++++|++++.||.|++|
T Consensus       114 ~~~s~~~~~l~~~~~dg-----~i~i~~~~~-~~~~~~~~~----~~~v~~~~~-------~~~~~~l~~~~~d~~i~iw  176 (425)
T 1r5m_A          114 LAWSHDGNSIVTGVENG-----ELRLWNKTG-ALLNVLNFH----RAPIVSVKW-------NKDGTHIISMDVENVTILW  176 (425)
T ss_dssp             EEECTTSSEEEEEETTS-----CEEEEETTS-CEEEEECCC----CSCEEEEEE-------CTTSSEEEEEETTCCEEEE
T ss_pred             EEEcCCCCEEEEEeCCC-----eEEEEeCCC-CeeeeccCC----CccEEEEEE-------CCCCCEEEEEecCCeEEEE
Confidence            46899999999998776     677787332 222222222    333445555       8999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      |+.+++...........            ...........+...+.+++|+|+ + .+++++.||.|++||+.+++.+..
T Consensus       177 d~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~g~i~~~d~~~~~~~~~  242 (425)
T 1r5m_A          177 NVISGTVMQHFELKETG------------GSSINAENHSGDGSLGVDVEWVDD-D-KFVIPGPKGAIFVYQITEKTPTGK  242 (425)
T ss_dssp             ETTTTEEEEEECCC---------------------------CCCBSCCEEEET-T-EEEEECGGGCEEEEETTCSSCSEE
T ss_pred             ECCCCcEEEEeeccccC------------ccceeeccccCCcceeeEEEEcCC-C-EEEEEcCCCeEEEEEcCCCceeee
Confidence            99765443321110000            000000011112223899999987 4 688999999999999999999999


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      +..|...|.+++|+|++ .++++++.|+.|++||+++.+.......+...+.+++|+|++  .+++++.||.|++||+++
T Consensus       243 ~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~  319 (425)
T 1r5m_A          243 LIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ  319 (425)
T ss_dssp             ECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTT
T ss_pred             eccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCC
Confidence            99999999999999999 899999999999999999988777666788999999999965  899999999999999988


Q ss_pred             CCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc------------------eeeEecC
Q 018293          241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP------------------SCIASRN  302 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------------~~~~~~~  302 (358)
                      .         ..+..+..|...+.+++|+|++ .+|++++.||.|++||+++.+.                  ..+..+.
T Consensus       320 ~---------~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (425)
T 1r5m_A          320 N---------TLLALSIVDGVPIFAGRISQDG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ  389 (425)
T ss_dssp             T---------EEEEEEECTTCCEEEEEECTTS-SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC
T ss_pred             C---------cEeEecccCCccEEEEEEcCCC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc
Confidence            7         7778888899999999999998 8999999999999999987650                  1456677


Q ss_pred             CCCc--eeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          303 PKAG--AVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       303 ~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      .|..  .|.+++|+|+++ .|++++.||.|++|++.
T Consensus       390 ~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          390 SSQDNDYIFDLSWNCAGN-KISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CTTCCCCEEEEEECTTSS-EEEEEESSSCCEEEECC
T ss_pred             CcccCCceEEEEccCCCc-eEEEEecCceEEEEeec
Confidence            7766  999999999999 48899999999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.4e-37  Score=286.88  Aligned_cols=282  Identities=18%  Similarity=0.291  Sum_probs=212.2

Q ss_pred             CcccCCC-cEEEEEEecCCCceEEEEEEeccCCCCC-ceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293            1 MTINPND-AVIVCARNEDDVSHLEVYILEESDGGDP-NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE   78 (358)
Q Consensus         1 l~~~p~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~   78 (358)
                      |+++|++ ++|++|+.++     .+.+|+....... ......-......+.++.|       +|++++|++|+.||.|+
T Consensus       388 v~~~~~~~~~l~s~s~D~-----~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~-------s~~g~~l~sgs~Dg~v~  455 (694)
T 3dm0_A          388 IATPIDNADIIVSASRDK-----SIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVL-------SSDGQFALSGSWDGELR  455 (694)
T ss_dssp             EECCTTCCSEEEEEETTS-----EEEEEECCCSTTCSCEEEEEEECCSSCEEEEEE-------CTTSSEEEEEETTSEEE
T ss_pred             EEecCCCCCEEEEEeCCC-----cEEEEEccCCCcccccccceecCCCCcEEEEEE-------CCCCCEEEEEeCCCcEE
Confidence            3577765 6788887776     6777776543211 1111111112233345544       89999999999999999


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN  158 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  158 (358)
                      |||+.++...                           ..+.+|...|.+++|+|+ +.+|++|+.|++|++||.......
T Consensus       456 vwd~~~~~~~---------------------------~~~~~h~~~v~~~~~s~~-~~~l~s~s~D~~i~iwd~~~~~~~  507 (694)
T 3dm0_A          456 LWDLAAGVST---------------------------RRFVGHTKDVLSVAFSLD-NRQIVSASRDRTIKLWNTLGECKY  507 (694)
T ss_dssp             EEETTTTEEE---------------------------EEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECTTSCEEE
T ss_pred             EEECCCCcce---------------------------eEEeCCCCCEEEEEEeCC-CCEEEEEeCCCEEEEEECCCCcce
Confidence            9999754322                           245579999999999999 678999999999999998654332


Q ss_pred             ee---ecccccceeeEEEcCCCC-cEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEE
Q 018293          159 LT---LEHHTDKVQAVAWNHHSP-QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK  234 (358)
Q Consensus       159 ~~---~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~  234 (358)
                      ..   ..+|...|.+++|+|++. ..+++++.|+.|++||++..+.......|...|.+++|+|+ +.++++++.||.|+
T Consensus       508 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd-g~~l~sg~~Dg~i~  586 (694)
T 3dm0_A          508 TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD-GSLCASGGKDGVVL  586 (694)
T ss_dssp             EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSBCE
T ss_pred             eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEE
Confidence            22   246888999999999862 57999999999999999988877767788999999999995 56999999999999


Q ss_pred             EEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC------------
Q 018293          235 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN------------  302 (358)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------  302 (358)
                      +||++++         +.+..+. +...+.+++|+|++ .++++++ ++.|++||+++++........            
T Consensus       587 iwd~~~~---------~~~~~~~-~~~~v~~~~~sp~~-~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  654 (694)
T 3dm0_A          587 LWDLAEG---------KKLYSLE-ANSVIHALCFSPNR-YWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSG  654 (694)
T ss_dssp             EEETTTT---------EEEECCB-CSSCEEEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------
T ss_pred             EEECCCC---------ceEEEec-CCCcEEEEEEcCCC-cEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccc
Confidence            9999887         4444444 45679999999987 6776665 667999999987632222110            


Q ss_pred             -----CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          303 -----PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       303 -----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                           .+...+++++|+|+|+ .|++|+.||.|++|++.
T Consensus       655 ~~~~~~~~~~~~~l~~spdg~-~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          655 PAATKRKVIYCTSLNWSADGS-TLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ------CCCCEEEEEECTTSS-EEEEEETTSEEEEEEC-
T ss_pred             cccCCceeEEeeeEEEcCCCC-EEEEEcCCCeEEEEecc
Confidence                 1112378999999999 48999999999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.8e-38  Score=272.45  Aligned_cols=280  Identities=13%  Similarity=0.175  Sum_probs=218.6

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      .++|+++.|+++..++     .+.+|+...+.....+..    ....+.++.|       +|++++|++|+.||.|++||
T Consensus       104 ~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~----h~~~v~~~~~-------~~~~~~l~s~s~d~~i~iwd  167 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEG-----DIKVLDSNFNLQREIDQA----HVSEITKLKF-------FPSGEALISSSQDMQLKIWS  167 (420)
T ss_dssp             EECSSSCEEEEEETTS-----CEEEECTTSCEEEEETTS----SSSCEEEEEE-------CTTSSEEEEEETTSEEEEEE
T ss_pred             EEecCCCEEEEEECCC-----CEEEEeCCCcceeeeccc----ccCccEEEEE-------CCCCCEEEEEeCCCeEEEEe
Confidence            4689999999998776     778888765421111112    2334446655       89999999999999999999


Q ss_pred             cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee
Q 018293           82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL  161 (358)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  161 (358)
                      +.+++...                           .+.+|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+
T Consensus       168 ~~~~~~~~---------------------------~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~  219 (420)
T 3vl1_A          168 VKDGSNPR---------------------------TLIGHRATVTDIAIIDR-GRNVLSASLDGTIRLWECGTGTTIHTF  219 (420)
T ss_dssp             TTTCCCCE---------------------------EEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCCCcCce---------------------------EEcCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEeECCCCceeEEe
Confidence            97644332                           34579999999999999 679999999999999999999988888


Q ss_pred             cc---cc---------------------cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-eecCCeeeEEE
Q 018293          162 EH---HT---------------------DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAW  216 (358)
Q Consensus       162 ~~---~~---------------------~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~  216 (358)
                      ..   +.                     ..+.+++|+|++ .++++++.||.|++||+++.+...... .+...+.+++|
T Consensus       220 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  298 (420)
T 3vl1_A          220 NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTV  298 (420)
T ss_dssp             CBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEE
T ss_pred             ecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEE
Confidence            64   22                     445555667888 899999999999999999877654333 36788999999


Q ss_pred             cCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee-cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          217 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      +|++..++++|+.||.|++||+++..        .++..+.. |...+.++.+. ++ .+|++++.|+.|++||+.....
T Consensus       299 ~~~~~~~l~~g~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~v~~~~~~-~~-~~l~s~~~d~~v~iw~~~~~~~  368 (420)
T 3vl1_A          299 DGNNANYIYAGYENGMLAQWDLRSPE--------CPVGEFLINEGTPINNVYFA-AG-ALFVSSGFDTSIKLDIISDPES  368 (420)
T ss_dssp             CSSCTTEEEEEETTSEEEEEETTCTT--------SCSEEEEESTTSCEEEEEEE-TT-EEEEEETTTEEEEEEEECCTTC
T ss_pred             eCCCCCEEEEEeCCCeEEEEEcCCCc--------CchhhhhccCCCCceEEEeC-CC-CEEEEecCCccEEEEeccCCCC
Confidence            99776699999999999999999862        44666666 67778888655 55 7999999999999999987321


Q ss_pred             -------eeeEecCCCCceeEEEEEcCCCC---eEEEEEccCCeEEEEEccC
Q 018293          296 -------SCIASRNPKAGAVFSVAFSEDSP---FVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       296 -------~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~i~vw~~~~  337 (358)
                             ........|...|.+++|+|+++   .+++ .+.+|.+.+|++.+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a-~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          369 ERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLE-VGKNNFCALYNLSN  419 (420)
T ss_dssp             CSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEE-EETTTEEEEEESCC
T ss_pred             CccceeccCccEEccCCcceEEEEEccCCCCcceEEE-EcCCceEEEEeccC
Confidence                   11223456788999999999998   6455 56689999999865

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.8e-36  Score=250.97  Aligned_cols=278  Identities=21%  Similarity=0.369  Sum_probs=217.8

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      |++||++ +|++| .++     .|++|+...++....+..+  .....+.++.|       +|++++|++|+.||.|++|
T Consensus        31 l~WS~~~-~lAvg-~D~-----tV~iWd~~tg~~~~~~~~~--~~~~~V~~v~~-------~~~~~~l~sgs~Dg~v~iw   94 (318)
T 4ggc_A           31 VDWSSGN-VLAVA-LDN-----SVYLWSASSGDILQLLQME--QPGEYISSVAW-------IKEGNYLAVGTSSAEVQLW   94 (318)
T ss_dssp             EEECTTS-EEEEE-ETT-----EEEEEETTTCCEEEEEECC--STTCCEEEEEE-------CTTSSEEEEEETTSEEEEE
T ss_pred             EEECCCC-EEEEE-eCC-----EEEEEECCCCCEEEEEEec--CCCCeEEEEEE-------CCCCCEEEEEECCCcEEEe
Confidence            3567765 77766 565     7889998776333332211  12223445555       8999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC-ceee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-KCNL  159 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~  159 (358)
                      |+.+++..                           ..+.+|...+.++.+.+   .++++++.++.+++|+.... ..+.
T Consensus        95 ~~~~~~~~---------------------------~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~  144 (318)
T 4ggc_A           95 DVQQQKRL---------------------------RNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVA  144 (318)
T ss_dssp             ETTTTEEE---------------------------EEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             ecCCceeE---------------------------EEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEE
Confidence            99765433                           24457888888887764   48999999999999998876 4566


Q ss_pred             eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc----ceeeecCCeeeEEEcCCCCCeEE--EEecCCeE
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG----FKWAVAADVESLAWDPHAEHSFV--VSLEDGTI  233 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~--~~~~dg~i  233 (358)
                      .+.+|...+..+.+.+++ .++++++.|+.|++||+++++...    ....+...+.++.++|++...+.  +++.++.|
T Consensus       145 ~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i  223 (318)
T 4ggc_A          145 TLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI  223 (318)
T ss_dssp             EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEE
T ss_pred             EEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEE
Confidence            778899999999999999 899999999999999998776432    23346678999999998777664  45678999


Q ss_pred             EEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE--eCCCcEEEEecCCCCceeeEecCCCCceeEEE
Q 018293          234 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG--STDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  311 (358)
Q Consensus       234 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  311 (358)
                      ++||.+..         . ......+...+..+.|+|++ ..++++  +.|+.|++||+++++  .+..+.+|.+.|+++
T Consensus       224 ~lwd~~~~---------~-~~~~~~~~~~v~~~~~~~~~-~~~~~~sg~~d~~i~iwd~~~~~--~~~~l~gH~~~V~~l  290 (318)
T 4ggc_A          224 RIWNVCSG---------A-CLSAVDAHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMA--KVAELKGHTSRVLSL  290 (318)
T ss_dssp             EEEETTTC---------C-EEEEEECSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCC--EEEEECCCSSCEEEE
T ss_pred             EEEecccc---------c-ccccccceeeeeeeeecccc-cceEEEEEcCCCEEEEEECCCCc--EEEEEcCCCCCEEEE
Confidence            99999875         3 33445677889999999988 555544  379999999999988  577788999999999


Q ss_pred             EEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          312 AFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       312 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      +|+|++++ |++|+.||+|+|||+.+..
T Consensus       291 ~~spdg~~-l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          291 TMSPDGAT-VASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EECTTSSC-EEEEETTTEEEEECCSCCC
T ss_pred             EEcCCCCE-EEEEecCCeEEEEECCCCC
Confidence            99999995 9999999999999997643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.1e-36  Score=260.78  Aligned_cols=273  Identities=18%  Similarity=0.212  Sum_probs=212.7

Q ss_pred             CcccceeeecCCccccC-CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccE
Q 018293           47 AFPLCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV  125 (358)
Q Consensus        47 ~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  125 (358)
                      ..+.++.|       +| ++++|++|+.||.|++||+.+...........              ..........+|...|
T Consensus        44 ~~v~~~~~-------s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~v  102 (408)
T 4a11_B           44 GGINTLDI-------EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA--------------VCSIGRDHPDVHRYSV  102 (408)
T ss_dssp             SCEEEEEE-------CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE--------------EEEECTTCTTCCSSCE
T ss_pred             CcEEEEEE-------ecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc--------------cccccccccccCCCcE
Confidence            34446655       88 99999999999999999998766544322110              0011112234699999


Q ss_pred             EEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCC--cEEEEEeCCCcEEEEEcccCCCccc
Q 018293          126 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHSGF  203 (358)
Q Consensus       126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~  203 (358)
                      .+++|+|+++.+|++++.||.|++||+.+++....+. +...+.++.|++.+.  .++++++.|+.|++||+++++....
T Consensus       103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  181 (408)
T 4a11_B          103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI  181 (408)
T ss_dssp             EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred             EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence            9999999657899999999999999999998888777 778899999998652  4899999999999999999888776


Q ss_pred             eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC-------CCCCCccEEEeecCCceeEEEecCCCCcEE
Q 018293          204 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-------STSQQSSFTLHAHDKAVCTISYNPLVPNLL  276 (358)
Q Consensus       204 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l  276 (358)
                      ...+...|.+++|+|++..++++++.||.|++||++.......       ............|...|.+++|+|++ .+|
T Consensus       182 ~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l  260 (408)
T 4a11_B          182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-LHL  260 (408)
T ss_dssp             ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS-SEE
T ss_pred             ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC-CEE
Confidence            7778999999999998776799999999999999987631100       00001112225788999999999998 899


Q ss_pred             EEEeCCCcEEEEecCCCCc---------------------------------------------eeeEecCCCCceeEEE
Q 018293          277 ATGSTDKMVKLWDLSNNQP---------------------------------------------SCIASRNPKAGAVFSV  311 (358)
Q Consensus       277 ~~~~~dg~i~i~d~~~~~~---------------------------------------------~~~~~~~~~~~~v~~~  311 (358)
                      ++++.||.|++||+++++.                                             ..+..+.+|...|.++
T Consensus       261 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~  340 (408)
T 4a11_B          261 LTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCC  340 (408)
T ss_dssp             EEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             EEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEE
Confidence            9999999999999987542                                             1344557789999999


Q ss_pred             EEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          312 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       312 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      +|+|+++ +|++++.||.|++||+.+++.+..
T Consensus       341 ~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          341 VFQSNFQ-ELYSGSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             EEETTTT-EEEEEETTSCEEEEEECC------
T ss_pred             EEcCCCC-EEEEECCCCeEEEEeCCCCCccCC
Confidence            9999999 589999999999999999887654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.5e-38  Score=271.31  Aligned_cols=245  Identities=14%  Similarity=0.163  Sum_probs=189.9

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      +|+|++++||+|+.||.|+|||+.+..                         ......+.+|...|.+++|+|+ +++|+
T Consensus        18 ~~s~~g~~l~~~~~d~~i~iw~~~~~~-------------------------~~~~~~~~~h~~~v~~~~~s~~-~~~l~   71 (377)
T 3dwl_C           18 AFNSQRTEFVTTTATNQVELYEQDGNG-------------------------WKHARTFSDHDKIVTCVDWAPK-SNRIV   71 (377)
T ss_dssp             EECSSSSEEECCCSSSCBCEEEEETTE-------------------------EEECCCBCCCSSCEEEEEECTT-TCCEE
T ss_pred             EECCCCCEEEEecCCCEEEEEEccCCc-------------------------eEEEEEEecCCceEEEEEEeCC-CCEEE
Confidence            348999999999999999999997531                         1233456689999999999999 67999


Q ss_pred             EEEcCCeEEEEECCCCc---eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC---ccceee-ecCCee
Q 018293          140 SASADKQVKIWDVAAGK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SGFKWA-VAADVE  212 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~-~~~~i~  212 (358)
                      +++.|+.|++||+.+++   ....+..|...|.+++|+|++ .+|++++.|+.|++||++..+.   ...... |...|.
T Consensus        72 s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~  150 (377)
T 3dwl_C           72 TCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL  150 (377)
T ss_dssp             EEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEE
T ss_pred             EEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeE
Confidence            99999999999999877   667778899999999999998 8899999999999999998763   333444 788999


Q ss_pred             eEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCC---------CCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC
Q 018293          213 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS---------TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  283 (358)
Q Consensus       213 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg  283 (358)
                      +++|+|+ +.++++++.||.|++||++........         ........+ .|...|.+++|+|++ .+|++++.||
T Consensus       151 ~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~  227 (377)
T 3dwl_C          151 SLDWHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDS  227 (377)
T ss_dssp             EEEECTT-SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTT
T ss_pred             EEEEcCC-CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCC
Confidence            9999995 569999999999999999744321100         001233444 889999999999998 8999999999


Q ss_pred             cEEEEecCCCCce--eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          284 MVKLWDLSNNQPS--CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       284 ~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      .|++||+++++..  .+..+..|...|.+++|+|+++ +|++|+.++.+ +|+..
T Consensus       228 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          228 SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSEE-EECCC
T ss_pred             cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEE-EEEeC
Confidence            9999999988741  1556678899999999999998 58888766665 66665

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2e-37  Score=267.86  Aligned_cols=289  Identities=18%  Similarity=0.294  Sum_probs=218.4

Q ss_pred             cccCCCcEEEEE-EecCCCceEEEEEEeccCCC----CCceEeeceeecCCcccceeeecCCccccC-CCceEEecCCCC
Q 018293            2 TINPNDAVIVCA-RNEDDVSHLEVYILEESDGG----DPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-KGNFMAVGSMEP   75 (358)
Q Consensus         2 ~~~p~~~~l~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg   75 (358)
                      +++|+...+++. ..++     .+.+|+.....    ....+..|    ...+.++.|       +| ++++|++|+.||
T Consensus        41 ~~~~~~~~~~~~~~~~g-----~i~v~~~~~~~~~~~~~~~~~~h----~~~V~~~~~-------~p~~~~~l~s~s~dg  104 (402)
T 2aq5_A           41 AVNPKFMALICEASGGG-----AFLVLPLGKTGRVDKNVPLVCGH----TAPVLDIAW-------CPHNDNVIASGSEDC  104 (402)
T ss_dssp             EECSSEEEEEBCCSSSC-----CEEEEETTCCEECCTTCCCBCCC----SSCEEEEEE-------CTTCTTEEEEEETTS
T ss_pred             EECCCeEEEEEEEcCCC-----EEEEEECccCCCCCCCCceEecC----CCCEEEEEe-------CCCCCCEEEEEeCCC
Confidence            456766666654 3344     66677754321    11122222    233446665       78 899999999999


Q ss_pred             eEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC
Q 018293           76 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  155 (358)
Q Consensus        76 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  155 (358)
                      .|+|||+.++.....                    .......+.+|...|.+++|+|++..+|++++.||.|++||++++
T Consensus       105 ~v~vw~~~~~~~~~~--------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  164 (402)
T 2aq5_A          105 TVMVWEIPDGGLVLP--------------------LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG  164 (402)
T ss_dssp             EEEEEECCTTCCSSC--------------------BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT
T ss_pred             eEEEEEccCCCCccc--------------------cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC
Confidence            999999986543221                    113344566899999999999996579999999999999999999


Q ss_pred             ceeeee--cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce-eeecCC-eeeEEEcCCCCCeEEEE---e
Q 018293          156 KCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAVAAD-VESLAWDPHAEHSFVVS---L  228 (358)
Q Consensus       156 ~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~~~~~---~  228 (358)
                      +.+..+  ..|...|.+++|+|++ .+|++++.||.|++||+++++..... ..+... +.++.|+|+ +.++++|   +
T Consensus       165 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~~~  242 (402)
T 2aq5_A          165 AAVLTLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE-GKILTTGFSRM  242 (402)
T ss_dssp             EEEEEECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST-TEEEEEEECTT
T ss_pred             CccEEEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC-CcEEEEeccCC
Confidence            999999  7899999999999998 88999999999999999988766544 355554 899999995 5588888   7


Q ss_pred             cCCeEEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecCCCCcEE-EEEeCCCcEEEEecCCCCc-eeeEecCCCC
Q 018293          229 EDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLL-ATGSTDKMVKLWDLSNNQP-SCIASRNPKA  305 (358)
Q Consensus       229 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~  305 (358)
                      .|+.|++||+++..        .+.... ..|...+.+++|+|++ .+| ++|+.||.|++||+.++++ ........|.
T Consensus       243 ~d~~i~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~  313 (402)
T 2aq5_A          243 SERQVALWDTKHLE--------EPLSLQELDTSSGVLLPFFDPDT-NIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSK  313 (402)
T ss_dssp             CCEEEEEEETTBCS--------SCSEEEECCCCSSCEEEEEETTT-TEEEEEETTCSCEEEEEECSSTTCEEEEEEECCS
T ss_pred             CCceEEEEcCcccc--------CCceEEeccCCCceeEEEEcCCC-CEEEEEEcCCCeEEEEEecCCCcceEeecccccC
Confidence            89999999999863        223232 3567789999999998 555 4666899999999998874 2222222367


Q ss_pred             ceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          306 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       306 ~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      .+|.+++|+|++.+ ++  +.++.+++|++.+++.
T Consensus       314 ~~v~~~~~sp~~~~-~~--s~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          314 ESQRGMGYMPKRGL-EV--NKCEIARFYKLHERKC  345 (402)
T ss_dssp             SCCSEEEECCGGGS-CG--GGTEEEEEEEEETTEE
T ss_pred             CcccceEEeccccc-ce--ecceeEEEEEcCCCcE
Confidence            89999999999985 54  4567999999988653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=8.4e-37  Score=287.01  Aligned_cols=283  Identities=19%  Similarity=0.238  Sum_probs=234.0

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|+|+++.|+++..++     .+.+|+...+.....+..|    ...+.++.|       +|++++|++|+.||.|++|
T Consensus        19 i~~sp~~~~la~~~~~g-----~v~iwd~~~~~~~~~~~~~----~~~v~~~~~-------s~~~~~l~~~~~dg~i~vw   82 (814)
T 3mkq_A           19 IDFHPTEPWVLTTLYSG-----RVEIWNYETQVEVRSIQVT----ETPVRAGKF-------IARKNWIIVGSDDFRIRVF   82 (814)
T ss_dssp             EEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEECC----SSCEEEEEE-------EGGGTEEEEEETTSEEEEE
T ss_pred             EEECCCCCEEEEEeCCC-----EEEEEECCCCceEEEEecC----CCcEEEEEE-------eCCCCEEEEEeCCCeEEEE
Confidence            47999999999998776     7888887664222222222    334456666       8999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC-ceee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-KCNL  159 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~  159 (358)
                      |+.+++..                           ..+.+|...|.+++|+|+ +.+|++++.||.|++||+.++ ....
T Consensus        83 ~~~~~~~~---------------------------~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~  134 (814)
T 3mkq_A           83 NYNTGEKV---------------------------VDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQ  134 (814)
T ss_dssp             ETTTCCEE---------------------------EEEECCSSCEEEEEECSS-SSEEEEEETTSEEEEEEGGGTSEEEE
T ss_pred             ECCCCcEE---------------------------EEEecCCCCEEEEEEeCC-CCEEEEEcCCCEEEEEECCCCceEEE
Confidence            99764432                           234579999999999999 669999999999999999887 6777


Q ss_pred             eecccccceeeEEEcC-CCCcEEEEEeCCCcEEEEEcccCCCccceeeec-CCeeeEEEcCC-CCCeEEEEecCCeEEEE
Q 018293          160 TLEHHTDKVQAVAWNH-HSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-ADVESLAWDPH-AEHSFVVSLEDGTIKGF  236 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~-~~~~~~~~~~dg~i~i~  236 (358)
                      .+.+|...|.+++|+| ++ ..+++++.||.|++||+...........+. ..+.+++|+|. ++.++++++.||.|++|
T Consensus       135 ~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~  213 (814)
T 3mkq_A          135 TFEGHEHFVMCVAFNPKDP-STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW  213 (814)
T ss_dssp             EEECCSSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEE
T ss_pred             EEcCCCCcEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            8888999999999999 55 899999999999999998877665444443 88999999982 34589999999999999


Q ss_pred             EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293          237 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                      |++++         .....+..|...|.+++|+|++ .+|++++.||.|++||+.+++  ....+..|...+.+++|+|+
T Consensus       214 d~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~  281 (814)
T 3mkq_A          214 DYQTK---------SCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYK--VEKTLNVGLERSWCIATHPT  281 (814)
T ss_dssp             ETTTT---------EEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCS--EEEEECCSSSSEEEEEECTT
T ss_pred             ECCCC---------cEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc--EEEEeecCCCcEEEEEEccC
Confidence            99886         6778888999999999999998 899999999999999999887  56677788889999999999


Q ss_pred             CCeEEEEEccCCeEEEEEccCCCc
Q 018293          317 SPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       317 ~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      +..++++++.++.+.+|++..+..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~  305 (814)
T 3mkq_A          282 GRKNYIASGFDNGFTVLSLGNDEP  305 (814)
T ss_dssp             CGGGEEEEEETTEEEEEECSCCSC
T ss_pred             CCceEEEEEeCCCEEEEEcCCCCc
Confidence            975445556678899999876543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.9e-37  Score=270.61  Aligned_cols=257  Identities=16%  Similarity=0.187  Sum_probs=196.5

Q ss_pred             cccceeeecCCccccC-CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEE
Q 018293           48 FPLCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL  126 (358)
Q Consensus        48 ~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  126 (358)
                      .+.|++|       +| ++++||+|+.||.|+|||+.+.+..                         ....+.+|.+.|+
T Consensus       121 ~V~~l~~-------~P~~~~~lasGs~dg~i~lWd~~~~~~~-------------------------~~~~~~gH~~~V~  168 (435)
T 4e54_B          121 RATSLAW-------HPTHPSTVAVGSKGGDIMLWNFGIKDKP-------------------------TFIKGIGAGGSIT  168 (435)
T ss_dssp             CEEEEEE-------CSSCTTCEEEEETTSCEEEECSSCCSCC-------------------------EEECCCSSSCCCC
T ss_pred             CEEEEEE-------eCCCCCEEEEEeCCCEEEEEECCCCCce-------------------------eEEEccCCCCCEE
Confidence            3456666       77 5679999999999999999754322                         1224557999999


Q ss_pred             EEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeec--ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce
Q 018293          127 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  204 (358)
Q Consensus       127 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  204 (358)
                      +|+|+|.++.+|++|+.||+|++||++++.......  .+...+.+++|+|++ .+|++|+.||.|++||++... ....
T Consensus       169 ~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~-~~~~  246 (435)
T 4e54_B          169 GLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKE-LWNL  246 (435)
T ss_dssp             EEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCB-CCCS
T ss_pred             EEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcce-eEEE
Confidence            999999657899999999999999998765433332  334567899999999 899999999999999997543 4446


Q ss_pred             eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc
Q 018293          205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  284 (358)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  284 (358)
                      ..|...|.+++|+|++..++++++.|+.|++||+++....      .......+|...|++++|+|++ .+|++++.||.
T Consensus       247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~  319 (435)
T 4e54_B          247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK------ASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSE  319 (435)
T ss_dssp             BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS------SCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSC
T ss_pred             ecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc------ceEEEeeeccccccceeECCCC-CeeEEEcCCCE
Confidence            6788999999999988889999999999999999876431      2233446789999999999998 89999999999


Q ss_pred             EEEEecCCCCceeeEecCCCCc------eeEEEEEcCCCCeEEEEE------------ccCCeEEEEEccCCCccccccc
Q 018293          285 VKLWDLSNNQPSCIASRNPKAG------AVFSVAFSEDSPFVLAIG------------GSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       285 i~i~d~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~~~------------~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                      |++||+++++.  ...+..|..      .+....|+|++.. ++++            ..++.|++||..+++.+.....
T Consensus       320 i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~  396 (435)
T 4e54_B          320 IRVYSASQWDC--PLGLIPHPHRHFQHLTPIKAAWHPRYNL-IVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD  396 (435)
T ss_dssp             EEEEESSSSSS--EEEECCCCCCCCSSSCCCBCEECSSSSC-EEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC
T ss_pred             EEEEECCCCcc--ceEEecccccccccceeEEEEEcCCCCE-EEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC
Confidence            99999998774  223322221      2234456666553 3333            2446899999999988877654


Q ss_pred             cC
Q 018293          347 KY  348 (358)
Q Consensus       347 ~~  348 (358)
                      .+
T Consensus       397 ~~  398 (435)
T 4e54_B          397 PE  398 (435)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.6e-36  Score=264.61  Aligned_cols=308  Identities=13%  Similarity=0.213  Sum_probs=211.7

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCC-----------CceEeecee--------ecCCcccceeeecCCccc
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGD-----------PNLYVHHHI--------IIPAFPLCMAWLDCPLKD   61 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~--------~~~~~~~~~~~~~~~~~~   61 (358)
                      ++|+|++++|++|..++     .+.+|+...+..           ...+..|..        .....+.++.|       
T Consensus        34 v~~s~~g~~la~g~~dg-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~-------  101 (447)
T 3dw8_B           34 VEFNHSGELLATGDKGG-----RVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW-------  101 (447)
T ss_dssp             EEECSSSSEEEEEETTS-----EEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE-------
T ss_pred             EEECCCCCEEEEEcCCC-----eEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE-------
Confidence            47999999999998776     777777665421           111112210        00133456666       


Q ss_pred             cCCC--ceEEecCCCCeEEEEEcccccCcCceeecCCcccccc---cccccC----------CceeccccccCCCcccEE
Q 018293           62 REKG--NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKK---KKKSKK----------GKKSSIKYKKGSHTDSVL  126 (358)
Q Consensus        62 s~~~--~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----------~~~~~~~~~~~~h~~~v~  126 (358)
                      +|++  .+|++++.||.|++||+.+..................   ......          ...........+|...|.
T Consensus       102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  181 (447)
T 3dw8_B          102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN  181 (447)
T ss_dssp             CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred             cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence            7887  7999999999999999986443211000000000000   000000          000011122468999999


Q ss_pred             EEecCCCCCcEEEEEEcCCeEEEEECCC-Cceee-------eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC
Q 018293          127 GLAWNKEFRNILASASADKQVKIWDVAA-GKCNL-------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  198 (358)
Q Consensus       127 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  198 (358)
                      +++|+|+ +.+|++| .|+.|++||+++ ++...       .+.+|...|.+++|+|+++.+|++++.||.|++||++++
T Consensus       182 ~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  259 (447)
T 3dw8_B          182 SISINSD-YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS  259 (447)
T ss_dssp             EEEECTT-SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred             EEEEcCC-CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence            9999999 6789998 799999999984 44444       356899999999999998689999999999999999988


Q ss_pred             CC----ccceeeecC------------CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCc
Q 018293          199 TH----SGFKWAVAA------------DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA  262 (358)
Q Consensus       199 ~~----~~~~~~~~~------------~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  262 (358)
                      +.    ......+..            .|.+++|+|+ +.++++++. +.|++||++..        ..++..+..|...
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~-~~v~iwd~~~~--------~~~~~~~~~~~~~  329 (447)
T 3dw8_B          260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS-GRYMMTRDY-LSVKVWDLNME--------NRPVETYQVHEYL  329 (447)
T ss_dssp             SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT-SSEEEEEES-SEEEEEETTCC--------SSCSCCEESCGGG
T ss_pred             ccccceeeEeccCCCccccccccccCceEEEEEECCC-CCEEEEeeC-CeEEEEeCCCC--------ccccceeeccccc
Confidence            75    333344443            8999999995 558888888 99999999872        1556666666532


Q ss_pred             ---------------eeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec--------------------------
Q 018293          263 ---------------VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR--------------------------  301 (358)
Q Consensus       263 ---------------i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------------  301 (358)
                                     +..++|+|++ .+|++|+.||.|++||+.+++...+...                          
T Consensus       330 ~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (447)
T 3dw8_B          330 RSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEI  408 (447)
T ss_dssp             TTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCE
T ss_pred             cccccccccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccc
Confidence                           2349999998 8999999999999999998874322111                          


Q ss_pred             ----CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          302 ----NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       302 ----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                          ..+...|..++|+|++. +||+++.++ +++|.-
T Consensus       409 ~~~~~~~~~~i~~~~~~p~~~-~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          409 SVDSLDFNKKILHTAWHPKEN-IIAVATTNN-LYIFQD  444 (447)
T ss_dssp             EGGGCCTTSCCCEEEECSSSS-EEEEECSSC-EEEEEC
T ss_pred             cccccccCCceeEEEECCCCC-EEEEEecce-eeeecc
Confidence                12345688999999999 588887765 778864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.2e-36  Score=280.56  Aligned_cols=244  Identities=22%  Similarity=0.331  Sum_probs=203.7

Q ss_pred             cCC-CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           62 REK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        62 s~~-~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      +|+ +++|++|+.||+|++|++.+.....                      ......+.+|...|.+++|+|+ +.+|++
T Consensus       391 ~~~~~~~l~s~s~D~~i~~W~~~~~~~~~----------------------~~~~~~~~~h~~~v~~v~~s~~-g~~l~s  447 (694)
T 3dm0_A          391 PIDNADIIVSASRDKSIILWKLTKDDKAY----------------------GVAQRRLTGHSHFVEDVVLSSD-GQFALS  447 (694)
T ss_dssp             CTTCCSEEEEEETTSEEEEEECCCSTTCS----------------------CEEEEEEECCSSCEEEEEECTT-SSEEEE
T ss_pred             cCCCCCEEEEEeCCCcEEEEEccCCCccc----------------------ccccceecCCCCcEEEEEECCC-CCEEEE
Confidence            665 5799999999999999997533211                      1122356689999999999999 679999


Q ss_pred             EEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc---eeeecCCeeeEEEc
Q 018293          141 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---KWAVAADVESLAWD  217 (358)
Q Consensus       141 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~i~~~~~~  217 (358)
                      |+.||+|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||.........   ...|...|.+++|+
T Consensus       448 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  526 (694)
T 3dm0_A          448 GSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS  526 (694)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred             EeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence            9999999999999999999999999999999999999 8899999999999999865432211   12467789999999


Q ss_pred             CCC-CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce
Q 018293          218 PHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  296 (358)
Q Consensus       218 ~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  296 (358)
                      |++ ...+++++.|+.|++||+++.         .....+.+|...|++++|+|++ .+|++|+.||.|++||+++++  
T Consensus       527 ~~~~~~~l~s~s~d~~v~vwd~~~~---------~~~~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~--  594 (694)
T 3dm0_A          527 PNTLQPTIVSASWDKTVKVWNLSNC---------KLRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGK--  594 (694)
T ss_dssp             SCSSSCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTE--
T ss_pred             CCCCcceEEEEeCCCeEEEEECCCC---------cEEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc--
Confidence            965 358999999999999999876         6778889999999999999998 899999999999999999887  


Q ss_pred             eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      .+..+. +...|.+++|+|++. ++++ +.++.|++||+.+++.+...
T Consensus       595 ~~~~~~-~~~~v~~~~~sp~~~-~l~~-~~~~~i~iwd~~~~~~~~~~  639 (694)
T 3dm0_A          595 KLYSLE-ANSVIHALCFSPNRY-WLCA-ATEHGIKIWDLESKSIVEDL  639 (694)
T ss_dssp             EEECCB-CSSCEEEEEECSSSS-EEEE-EETTEEEEEETTTTEEEEEE
T ss_pred             eEEEec-CCCcEEEEEEcCCCc-EEEE-EcCCCEEEEECCCCCChhhh
Confidence            344443 456799999999998 4654 45677999999998776544

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.3e-36  Score=262.73  Aligned_cols=248  Identities=21%  Similarity=0.285  Sum_probs=204.2

Q ss_pred             ccccCCCceE-EecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           59 LKDREKGNFM-AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        59 ~~~s~~~~~l-~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      ++++|+...+ ++|+.||.|+||++......                       ......+.+|...|++++|+|.++.+
T Consensus        40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----------------------~~~~~~~~~h~~~V~~~~~~p~~~~~   96 (402)
T 2aq5_A           40 CAVNPKFMALICEASGGGAFLVLPLGKTGRV-----------------------DKNVPLVCGHTAPVLDIAWCPHNDNV   96 (402)
T ss_dssp             EEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----------------------CTTCCCBCCCSSCEEEEEECTTCTTE
T ss_pred             EEECCCeEEEEEEEcCCCEEEEEECccCCCC-----------------------CCCCceEecCCCCEEEEEeCCCCCCE
Confidence            3457776544 45789999999999642211                       12233466899999999999933789


Q ss_pred             EEEEEcCCeEEEEECCCC-------ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce--eeec
Q 018293          138 LASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVA  208 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~  208 (358)
                      |++|+.||.|++||+.++       +++..+.+|...|.+++|+|++..++++++.||.|++||+++++.....  ..+.
T Consensus        97 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  176 (402)
T 2aq5_A           97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP  176 (402)
T ss_dssp             EEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCC
T ss_pred             EEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCC
Confidence            999999999999999987       5678888999999999999998679999999999999999988776655  5688


Q ss_pred             CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eecCCc-eeEEEecCCCCcEEEEE---eCCC
Q 018293          209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKA-VCTISYNPLVPNLLATG---STDK  283 (358)
Q Consensus       209 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~-i~~i~~~~~~~~~l~~~---~~dg  283 (358)
                      ..|.+++|+|+ +.++++++.||.|++||++++         ..+..+ ..|... +.++.|+|++ .+|++|   +.|+
T Consensus       177 ~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~  245 (402)
T 2aq5_A          177 DTIYSVDWSRD-GALICTSCRDKRVRVIEPRKG---------TVVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSER  245 (402)
T ss_dssp             SCEEEEEECTT-SSCEEEEETTSEEEEEETTTT---------EEEEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCE
T ss_pred             CceEEEEECCC-CCEEEEEecCCcEEEEeCCCC---------ceeeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCc
Confidence            89999999995 568999999999999999987         666666 677765 8999999998 899998   7899


Q ss_pred             cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          284 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       284 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      .|++||+++.+.........|...+.+++|+|++++++++|+.||.|++||+.+++.
T Consensus       246 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          246 QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             EEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred             eEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence            999999998764222333356678999999999997666777899999999998875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-37  Score=268.30  Aligned_cols=289  Identities=14%  Similarity=0.142  Sum_probs=214.5

Q ss_pred             CcccC-CCcEEEEEEecCCCceEEEEEEeccC---CCC--CceEeeceeecCCcccceeeecCCccccCCCceEEecCCC
Q 018293            1 MTINP-NDAVIVCARNEDDVSHLEVYILEESD---GGD--PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME   74 (358)
Q Consensus         1 l~~~p-~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d   74 (358)
                      ++|+| ++++|++|..++     .+.+|+...   +..  ..+...|    ...+.++.|       +|++++|++|+.|
T Consensus        69 ~~~s~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~~h----~~~v~~~~~-------~~~~~~l~s~s~d  132 (437)
T 3gre_A           69 SAVSPGETPYLITGSDQG-----VIKIWNLKEIIVGEVYSSSLTYDC----SSTVTQITM-------IPNFDAFAVSSKD  132 (437)
T ss_dssp             EEEECSSSCEEEEEETTS-----EEEEEEHHHHHTTCCCSCSEEEEC----SSCEEEEEE-------CTTSSEEEEEETT
T ss_pred             EEECCCCCCEEEEecCCc-----eEEEeECcccccCcccceeeeccC----CCCEEEEEE-------eCCCCEEEEEeCC
Confidence            46899 999999998776     777777654   211  1222122    344456666       7899999999999


Q ss_pred             CeEEEEEccc---ccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEe--cCCCCCcEEEEEEcCCeEEE
Q 018293           75 PAIEIWDLDV---IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA--WNKEFRNILASASADKQVKI  149 (358)
Q Consensus        75 g~i~vw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~l~s~~~dg~v~i  149 (358)
                      |.|++||+..   ++.......               ...........++...+.++.  ++++ +.+|++|+.|+.|++
T Consensus       133 g~i~vwd~~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i  196 (437)
T 3gre_A          133 GQIIVLKVNHYQQESEVKFLNC---------------ECIRKINLKNFGKNEYAVRMRAFVNEE-KSLLVALTNLSRVII  196 (437)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEE---------------EEEEEEEGGGGSSCCCEEEEEEEECSS-CEEEEEEETTSEEEE
T ss_pred             CEEEEEEeccccCCceeecccc---------------ceeEEEEccCcccccCceEEEEEEcCC-CCEEEEEeCCCeEEE
Confidence            9999999952   222111000               000000000111567788887  5677 679999999999999


Q ss_pred             EECCCCceeeeecc--cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-eecCCeeeEEEcCC---CCCe
Q 018293          150 WDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPH---AEHS  223 (358)
Q Consensus       150 wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~---~~~~  223 (358)
                      ||+++++++..+..  |...|++++|+|++ .+|++++.||.|++||++.++...... .+...|.+++|+|.   ++.+
T Consensus       197 wd~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~  275 (437)
T 3gre_A          197 FDIRTLERLQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVI  275 (437)
T ss_dssp             EETTTCCEEEEEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEE
T ss_pred             EeCCCCeeeEEEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccE
Confidence            99999999999987  88999999999998 899999999999999999876655332 56678999977763   3558


Q ss_pred             EEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe------------------------e--cCCceeEEEecCCCCcEEE
Q 018293          224 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH------------------------A--HDKAVCTISYNPLVPNLLA  277 (358)
Q Consensus       224 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~------------------------~--~~~~i~~i~~~~~~~~~l~  277 (358)
                      +++++.||.|++||+++++         ....+.                        +  |...|++++|+ ++ .+|+
T Consensus       276 l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~  344 (437)
T 3gre_A          276 VVGGSSKTFLTIWNFVKGH---------CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILL  344 (437)
T ss_dssp             EEEESTTEEEEEEETTTTE---------EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEE
T ss_pred             EEEEcCCCcEEEEEcCCCc---------EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEE
Confidence            9999999999999998763         233322                        2  66778999999 55 8999


Q ss_pred             EEeCCCcEEEEecCCCCceeeEec-----------------------------------CCCCceeEEEEEcCC--CCeE
Q 018293          278 TGSTDKMVKLWDLSNNQPSCIASR-----------------------------------NPKAGAVFSVAFSED--SPFV  320 (358)
Q Consensus       278 ~~~~dg~i~i~d~~~~~~~~~~~~-----------------------------------~~~~~~v~~~~~~~~--~~~~  320 (358)
                      +|+.|+.|++||+.+++.......                                   ..|...|++++|+++  +. +
T Consensus       345 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~-~  423 (437)
T 3gre_A          345 TDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETP-L  423 (437)
T ss_dssp             EEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSE-E
T ss_pred             ecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCce-E
Confidence            999999999999998764332221                                   128889999999998  55 7


Q ss_pred             EEEEccCCeEEEEE
Q 018293          321 LAIGGSKGKLEIWD  334 (358)
Q Consensus       321 l~~~~~dg~i~vw~  334 (358)
                      |++|+.||.|+||+
T Consensus       424 l~s~~~dG~I~iw~  437 (437)
T 3gre_A          424 LVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEETTSCEEEEC
T ss_pred             EEEEcCCceEEEeC
Confidence            99999999999995

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.4e-36  Score=265.27  Aligned_cols=273  Identities=21%  Similarity=0.378  Sum_probs=217.9

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      .+.++++.+++|..++     .+.+|+...+.....+..|    ...+.++.|         ++++|++|+.||.|++||
T Consensus       138 ~~~~d~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~h----~~~v~~l~~---------~~~~l~sg~~dg~i~vwd  199 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDN-----TIKIWDKNTLECKRILTGH----TGSVLCLQY---------DERVIITGSSDSTVRVWD  199 (435)
T ss_dssp             EEECCSSEEEEEESSS-----CEEEEESSSCCEEEEECCC----SSCEEEEEC---------CSSEEEEEETTSCEEEEE
T ss_pred             EEEECCCEEEEEeCCC-----eEEEEeCCCCeEEEEEcCC----CCcEEEEEE---------CCCEEEEEcCCCeEEEEE
Confidence            3567899999998887     7888887765333333323    223345533         788999999999999999


Q ss_pred             cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee---
Q 018293           82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN---  158 (358)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---  158 (358)
                      +.+++..                           ..+.+|...|.+++|+++   ++++|+.||.|++||+.+++..   
T Consensus       200 ~~~~~~~---------------------------~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~  249 (435)
T 1p22_A          200 VNTGEML---------------------------NTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLR  249 (435)
T ss_dssp             SSSCCEE---------------------------EEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEE
T ss_pred             CCCCcEE---------------------------EEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceee
Confidence            9764432                           244579999999999753   8999999999999999988655   


Q ss_pred             eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293          159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  238 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~  238 (358)
                      ..+.+|...|.+++|  ++ .++++++.||.|++||+++++.......+...+.++.|++   .++++|+.||.|++||+
T Consensus       250 ~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~  323 (435)
T 1p22_A          250 RVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDI  323 (435)
T ss_dssp             EEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEET
T ss_pred             eEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCC---CEEEEEeCCCeEEEEEC
Confidence            667889999999999  44 7899999999999999999888777777889999999953   58999999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc-------eeeEecCCCCceeEEE
Q 018293          239 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-------SCIASRNPKAGAVFSV  311 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~v~~~  311 (358)
                      +++         ..+..+.+|...|.+++|  ++ .+|++|+.||.|++||++++..       .....+..|.+.|.++
T Consensus       324 ~~~---------~~~~~~~~h~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  391 (435)
T 1p22_A          324 ECG---------ACLRVLEGHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL  391 (435)
T ss_dssp             TTC---------CEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred             CCC---------CEEEEEeCCcCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEE
Confidence            987         778889999999999999  34 7999999999999999876431       1566778899999999


Q ss_pred             EEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          312 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       312 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      +|  ++. .|++++.||.|++||+.+......
T Consensus       392 ~~--~~~-~l~s~s~Dg~i~iwd~~~~~~~~~  420 (435)
T 1p22_A          392 QF--DEF-QIVSSSHDDTILIWDFLNDPAAQA  420 (435)
T ss_dssp             EE--CSS-CEEECCSSSEEEEEC---------
T ss_pred             Ee--CCC-EEEEEeCCCEEEEEECCCCCCccc
Confidence            99  566 488999999999999988765543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-37  Score=272.66  Aligned_cols=238  Identities=12%  Similarity=0.124  Sum_probs=184.4

Q ss_pred             CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC-----CcE
Q 018293           63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-----RNI  137 (358)
Q Consensus        63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----~~~  137 (358)
                      |+++.|++++.|++|+||++.+++....                       ....+.+|.+.|.+++|+|++     +.+
T Consensus       171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~-----------------------~~~~l~~~~~~V~~v~wsp~~~~~~~~~~  227 (524)
T 2j04_B          171 EHLEMFDKEKHSSCIQIFKMNTSTLHCV-----------------------KVQTIVHSFGEVWDLKWHEGCHAPHLVGC  227 (524)
T ss_dssp             -----------CEEEEEEEEETTTCCEE-----------------------EEEEEEECCCSEEEEEECSSCCCSSSSCE
T ss_pred             hhhhhhccCCCCceEEEEEccCCCCCce-----------------------EEEEEEecCCcEEEEEECCCCCCCCCCce
Confidence            4445566677899999999976432110                       111234578899999999962     469


Q ss_pred             EEEEEcCCeEEEEECCCCce-----------eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-ccee
Q 018293          138 LASASADKQVKIWDVAAGKC-----------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKW  205 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~  205 (358)
                      ||+++.||+|++||+.+++.           ...+.+|...|++++|+++  ..|++|+.||+|++||++++... ....
T Consensus       228 LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~~~~~~~~  305 (524)
T 2j04_B          228 LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPEVPSFYDQ  305 (524)
T ss_dssp             EEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCSSCSEEEE
T ss_pred             EEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCCCceEEee
Confidence            99999999999999987642           2367789999999999985  47999999999999999976543 3356


Q ss_pred             eecCCeeeE--EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCC--ceeEEEecCCCCcEEEEEeC
Q 018293          206 AVAADVESL--AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGST  281 (358)
Q Consensus       206 ~~~~~i~~~--~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~l~~~~~  281 (358)
                      .|...|.++  +|+|++.++|++++.|++|++||+++.         .....+.+|..  .|.+++|+|++ ..+++++.
T Consensus       306 ~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~---------~~~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~~  375 (524)
T 2j04_B          306 VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI---------ATTKTTVSRFRGSNLVPVVYCPQI-YSYIYSDG  375 (524)
T ss_dssp             CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH---------HHHCEEEEECSCCSCCCEEEETTT-TEEEEECS
T ss_pred             cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC---------CcccccccccccCcccceEeCCCc-CeEEEeCC
Confidence            788999999  567744379999999999999999986         55556666653  58899999998 78999999


Q ss_pred             CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          282 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       282 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      |++|++||++++.  +...+.+|.+.|++++|+|++++ |++|+.||+|++||+..+
T Consensus       376 d~tv~lwd~~~~~--~~~~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          376 ASSLRAVPSRAAF--AVHPLVSRETTITAIGVSRLHPM-VLAGSADGSLIITNAARR  429 (524)
T ss_dssp             SSEEEEEETTCTT--CCEEEEECSSCEEEEECCSSCCB-CEEEETTTEEECCBSCSS
T ss_pred             CCcEEEEECcccc--cceeeecCCCceEEEEeCCCCCe-EEEEECCCEEEEEechHh
Confidence            9999999999877  34456679999999999999995 899999999999998653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5e-37  Score=269.14  Aligned_cols=254  Identities=16%  Similarity=0.282  Sum_probs=195.5

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCc------------ccEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT------------DSVLG  127 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~  127 (358)
                      +|+|+|++||+|+.||.|+||++.+.+....                ...........+.+|.            ..|++
T Consensus        35 ~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~----------------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~   98 (447)
T 3dw8_B           35 EFNHSGELLATGDKGGRVVIFQQEQENKIQS----------------HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINK   98 (447)
T ss_dssp             EECSSSSEEEEEETTSEEEEEEECC-----C----------------CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCE
T ss_pred             EECCCCCEEEEEcCCCeEEEEEecCCCCCCc----------------ccccceeEecccccccccccccccccccCceEE
Confidence            3389999999999999999999986542110                0011233445666787            88999


Q ss_pred             EecCCCCC-cEEEEEEcCCeEEEEECCCCcee---------------------------------------ee-eccccc
Q 018293          128 LAWNKEFR-NILASASADKQVKIWDVAAGKCN---------------------------------------LT-LEHHTD  166 (358)
Q Consensus       128 ~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~---------------------------------------~~-~~~~~~  166 (358)
                      ++|+|++. .+|++++.|++|++||+.+++..                                       .. ..+|..
T Consensus        99 l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  178 (447)
T 3dw8_B           99 IRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY  178 (447)
T ss_dssp             EEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred             EEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence            99999942 68999999999999998764432                                       12 357999


Q ss_pred             ceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC-cc-------ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293          167 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SG-------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  238 (358)
Q Consensus       167 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~  238 (358)
                      .|.+++|+|++ .+|+++ .|+.|++||++.... ..       ....|...|.+++|+|++..++++++.||.|++||+
T Consensus       179 ~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  256 (447)
T 3dw8_B          179 HINSISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM  256 (447)
T ss_dssp             CCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             ceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence            99999999998 888888 799999999984332 21       133677889999999976579999999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEeecCC------------ceeEEEecCCCCcEEEEEeCCCcEEEEecCC-CCceeeEecCCCC
Q 018293          239 RTAKSDPDSTSQQSSFTLHAHDK------------AVCTISYNPLVPNLLATGSTDKMVKLWDLSN-NQPSCIASRNPKA  305 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~------------~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~  305 (358)
                      ++.....     .....+..|..            .|.+++|+|++ .+|++++. +.|++||+++ +++  +..+..|.
T Consensus       257 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~~--~~~~~~~~  327 (447)
T 3dw8_B          257 RASALCD-----RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENRP--VETYQVHE  327 (447)
T ss_dssp             TTCSSSC-----TTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSSC--SCCEESCG
T ss_pred             cCCcccc-----ceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCccc--cceeeccc
Confidence            9873211     22567777765            89999999998 89999998 9999999987 653  34444554


Q ss_pred             ce---------------eEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          306 GA---------------VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       306 ~~---------------v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      ..               +..++|+|++++ |++|+.||.|++||+.+++.+
T Consensus       328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~-l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          328 YLRSKLCSLYENDCIFDKFECCWNGSDSV-VMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             GGTTTHHHHHHTSGGGCCCCEEECTTSSE-EEEECSTTEEEEEETTTCCEE
T ss_pred             cccccccccccccccccceEEEECCCCCE-EEEeccCCEEEEEEcCCCcce
Confidence            31               334999999995 899999999999999998765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.9e-36  Score=266.72  Aligned_cols=278  Identities=16%  Similarity=0.259  Sum_probs=223.7

Q ss_pred             ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEc
Q 018293            3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDL   82 (358)
Q Consensus         3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~   82 (358)
                      +.++++.|++|..++     .+.+|+...+.....+..|    ...+.++.|       ++++ +|++|+.||.|++||+
T Consensus       128 ~~~~~~~l~sgs~dg-----~i~vwd~~~~~~~~~~~~h----~~~V~~l~~-------~~~~-~l~s~s~dg~i~vwd~  190 (464)
T 3v7d_B          128 LQFEDNYVITGADDK-----MIRVYDSINKKFLLQLSGH----DGGVWALKY-------AHGG-ILVSGSTDRTVRVWDI  190 (464)
T ss_dssp             EEEETTEEEEEETTS-----CEEEEETTTTEEEEEECCC----SSCEEEEEE-------CSTT-EEEEEETTSCEEEEET
T ss_pred             EEECCCEEEEEcCCC-----cEEEEECCCCcEEEEEeCC----CcCEEEEEE-------cCCC-EEEEEeCCCCEEEEEC
Confidence            455778999998877     7888887765322222222    334456666       6777 9999999999999999


Q ss_pred             ccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCC--CCCcEEEEEEcCCeEEEEECCCCce---
Q 018293           83 DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK--EFRNILASASADKQVKIWDVAAGKC---  157 (358)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~~~dg~v~iwd~~~~~~---  157 (358)
                      .+++.                           ...+.+|...|.+++|++  + +.++++|+.||.|++||+.+++.   
T Consensus       191 ~~~~~---------------------------~~~~~~h~~~v~~l~~~~~~~-~~~l~s~s~d~~i~vwd~~~~~~~~~  242 (464)
T 3v7d_B          191 KKGCC---------------------------THVFEGHNSTVRCLDIVEYKN-IKYIVTGSRDNTLHVWKLPKESSVPD  242 (464)
T ss_dssp             TTTEE---------------------------EEEECCCSSCEEEEEEEESSS-CEEEEEEETTSCEEEEECCCCCCC--
T ss_pred             CCCcE---------------------------EEEECCCCCccEEEEEecCCC-CCEEEEEcCCCcEEEeeCCCCccccc
Confidence            75432                           224557999999999984  4 67999999999999999987653   


Q ss_pred             --------------------eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293          158 --------------------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  217 (358)
Q Consensus       158 --------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  217 (358)
                                          +..+.+|...+.++  ++++ .++++++.||.|++||+++.+.......+...+.+++|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  319 (464)
T 3v7d_B          243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD  319 (464)
T ss_dssp             ----CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred             ccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEc
Confidence                                44567788888877  4556 789999999999999999888777667788999999999


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCcee
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  297 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  297 (358)
                      |+ +..+++|+.||.|++||++++         ..+..+.+|...|.+++|++   .+|++++.||.|++||+++...  
T Consensus       320 ~~-~~~l~sg~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~--  384 (464)
T 3v7d_B          320 HE-RKRCISASMDTTIRIWDLENG---------ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSR--  384 (464)
T ss_dssp             TT-TTEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCE--
T ss_pred             CC-CCEEEEEeCCCcEEEEECCCC---------cEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCce--
Confidence            95 558999999999999999987         77888999999999999984   7999999999999999998763  


Q ss_pred             eEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293          298 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       298 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                      .... .+...+..++|+++++ ++++|+ ||.|++||+.+++.+.+...
T Consensus       385 ~~~~-~~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g~~~~~~~~  430 (464)
T 3v7d_B          385 KFSY-HHTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSGKLVHANIL  430 (464)
T ss_dssp             EEEE-ECTTCCCEEEEEECSS-EEEEEE-TTEEEEEETTTCCEEESCTT
T ss_pred             eeee-cCCCCccEEEEEeCCC-EEEEec-CCeEEEEECCCCcEEehhhc
Confidence            2222 2556677889999999 577777 89999999999998876333

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.8e-36  Score=257.09  Aligned_cols=243  Identities=16%  Similarity=0.194  Sum_probs=201.3

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      +|++++|++|+.||.|++||+.+.+                         ......+.+|...|.+++|+|+ +.+|+++
T Consensus        17 s~~~~~l~~~~~d~~v~i~~~~~~~-------------------------~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~   70 (372)
T 1k8k_C           17 NKDRTQIAICPNNHEVHIYEKSGNK-------------------------WVQVHELKEHNGQVTGVDWAPD-SNRIVTC   70 (372)
T ss_dssp             CTTSSEEEEECSSSEEEEEEEETTE-------------------------EEEEEEEECCSSCEEEEEEETT-TTEEEEE
T ss_pred             CCCCCEEEEEeCCCEEEEEeCCCCc-------------------------EEeeeeecCCCCcccEEEEeCC-CCEEEEE
Confidence            8999999999999999999997532                         1123345579999999999998 6799999


Q ss_pred             EcCCeEEEEECCCCceeee--ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc----cceeeecCCeeeEE
Q 018293          142 SADKQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS----GFKWAVAADVESLA  215 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~i~~~~  215 (358)
                      +.||.|++||+++++....  +..|...|.+++|+|++ .++++++.|+.|++||++.....    .....+...+.+++
T Consensus        71 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~  149 (372)
T 1k8k_C           71 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD  149 (372)
T ss_dssp             ETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred             cCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEE
Confidence            9999999999988865443  36688999999999998 89999999999999999987642    11234678899999


Q ss_pred             EcCCCCCeEEEEecCCeEEEEEcccCCCCCC---------CCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEE
Q 018293          216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD---------STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK  286 (358)
Q Consensus       216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~  286 (358)
                      |+|+ +.++++++.||.|++||++.......         .........+..|...|.+++|+|++ .+|++++.||.|+
T Consensus       150 ~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~  227 (372)
T 1k8k_C          150 WHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVC  227 (372)
T ss_dssp             ECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEE
T ss_pred             EcCC-CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCEEE
Confidence            9995 56999999999999999763221100         11125667777899999999999998 8999999999999


Q ss_pred             EEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          287 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       287 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      +||+++++  .+..+..|..+|.+++|+|+++ ++++| .|+.|++|++.+
T Consensus       228 i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          228 LADADKKM--AVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEGGGTT--EEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEET
T ss_pred             EEECCCCc--eeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccC
Confidence            99999887  5666778888999999999998 47766 899999999988

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=8.1e-36  Score=271.74  Aligned_cols=292  Identities=13%  Similarity=0.207  Sum_probs=232.0

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCC----CCCceEeeceeecCCc-ccceeeecCCccccC--CCceEEecCC
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDG----GDPNLYVHHHIIIPAF-PLCMAWLDCPLKDRE--KGNFMAVGSM   73 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~--~~~~l~~g~~   73 (358)
                      ++|+|++++|+++. ++     .+.+|+...+    .....+..|    ... +.++.|       +|  ++++|++|+.
T Consensus        24 ~~~spdg~~l~~~~-~~-----~v~v~~~~~~~~~~~~~~~~~~h----~~~~v~~~~~-------sp~~~~~~l~s~~~   86 (615)
T 1pgu_A           24 LSYDPTTNAIAYPC-GK-----SAFVRCLDDGDSKVPPVVQFTGH----GSSVVTTVKF-------SPIKGSQYLCSGDE   86 (615)
T ss_dssp             CEEETTTTEEEEEE-TT-----EEEEEECCSSCCSSCSEEEECTT----TTSCEEEEEE-------CSSTTCCEEEEEET
T ss_pred             EEECCCCCEEEEec-CC-----eEEEEECCCCCCccccceEEecC----CCceEEEEEE-------CcCCCCCEEEEecC
Confidence            57999999999996 44     6778887654    222233223    233 446655       89  9999999999


Q ss_pred             CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC----CeEEE
Q 018293           74 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD----KQVKI  149 (358)
Q Consensus        74 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----g~v~i  149 (358)
                      ||.|++||+.++.....                   ........+..|...|.+++|+|+ +.+|++++.+    +.|.+
T Consensus        87 dg~v~vw~~~~~~~~~~-------------------~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~v~~  146 (615)
T 1pgu_A           87 SGKVIVWGWTFDKESNS-------------------VEVNVKSEFQVLAGPISDISWDFE-GRRLCVVGEGRDNFGVFIS  146 (615)
T ss_dssp             TSEEEEEEEEEEGGGTE-------------------EEEEEEEEEECCSSCEEEEEECTT-SSEEEEEECCSSCSEEEEE
T ss_pred             CCEEEEEeCCCCccccc-------------------ccccccchhhcccccEEEEEEeCC-CCEEEEeccCCCCccEEEE
Confidence            99999999965421110                   012334455679999999999999 6789999887    68888


Q ss_pred             EECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecC---CeeeEEEcCCCCCeEEE
Q 018293          150 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA---DVESLAWDPHAEHSFVV  226 (358)
Q Consensus       150 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~  226 (358)
                      ||  .++.+..+.+|...|.+++|+|++...+++++.|+.|++||+.+.+.......+..   .|.+++|+|+++.++++
T Consensus       147 ~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  224 (615)
T 1pgu_A          147 WD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT  224 (615)
T ss_dssp             TT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred             EE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEE
Confidence            88  66788889999999999999999955899999999999999988877666666777   89999999963669999


Q ss_pred             EecCCeEEEEEcccCCCCCCCCCCCccEEE-e---ecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC
Q 018293          227 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-H---AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  302 (358)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~---~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  302 (358)
                      ++.||.|++||++++         +.+..+ .   .|...|.+++|+ ++ .+|++++.|+.|++||+++++.  ...+.
T Consensus       225 ~~~dg~i~vwd~~~~---------~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~--~~~~~  291 (615)
T 1pgu_A          225 VGSDRKISCFDGKSG---------EFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKC--VQKWT  291 (615)
T ss_dssp             EETTCCEEEEETTTC---------CEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEE--EEEEE
T ss_pred             EeCCCeEEEEECCCC---------CEeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcE--EEEEc
Confidence            999999999999887         666677 5   899999999999 76 8999999999999999998874  33333


Q ss_pred             CC----CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293          303 PK----AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       303 ~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                      .+    ...+.++.|. ++. .+++++.||.|++||+.+++.+.....
T Consensus       292 ~~~~~~~~~~~~~~~~-~~~-~l~~~~~~g~i~~~d~~~~~~~~~~~~  337 (615)
T 1pgu_A          292 LDKQQLGNQQVGVVAT-GNG-RIISLSLDGTLNFYELGHDEVLKTISG  337 (615)
T ss_dssp             CCTTCGGGCEEEEEEE-ETT-EEEEEETTSCEEEEETTEEEEEEEECC
T ss_pred             CCCCcccCceeEEEeC-CCC-eEEEEECCCCEEEEECCCCcEEEEEeC
Confidence            33    4678888886 777 588899999999999998776655443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.2e-36  Score=259.21  Aligned_cols=253  Identities=15%  Similarity=0.227  Sum_probs=210.0

Q ss_pred             CcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEE
Q 018293           47 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL  126 (358)
Q Consensus        47 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  126 (358)
                      ..+.++.|       +|  ++|++|+.||.|++|++.+.+...+                     ......+.+|...|.
T Consensus        17 ~~i~~~~~-------~~--~~l~s~~~dg~i~iw~~~~~~~~~~---------------------~~~~~~~~~h~~~v~   66 (397)
T 1sq9_A           17 ADIFSVSA-------CN--SFTVSCSGDGYLKVWDNKLLDNENP---------------------KDKSYSHFVHKSGLH   66 (397)
T ss_dssp             SCEEEEEE-------CS--SEEEEEETTSEEEEEESBCCTTCCG---------------------GGGEEEEECCTTCEE
T ss_pred             cCeEEEEe-------cC--CeEEEEcCCCEEEEEECCCcccccC---------------------CCcceEEecCCCcEE
Confidence            34456666       66  7999999999999999986542211                     223345568999999


Q ss_pred             EEecCCC---CC---cEEEEEEcCCeEEEEECCCCce-----eeeeccc-----ccceeeEEEc----CCCCcE-EEEEe
Q 018293          127 GLAWNKE---FR---NILASASADKQVKIWDVAAGKC-----NLTLEHH-----TDKVQAVAWN----HHSPQI-LLSGS  185 (358)
Q Consensus       127 ~~~~~~~---~~---~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~~~  185 (358)
                      +++|+|+   ++   .+|++++.||.|++||+.+++.     ...+..|     ...|.+++|+    |++ .+ |++++
T Consensus        67 ~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~  145 (397)
T 1sq9_A           67 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATD  145 (397)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEE
T ss_pred             EEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEe
Confidence            9999997   24   5899999999999999998887     7888888     5899999999    988 77 99999


Q ss_pred             CCCcEEEEEccc------CCCcc-----cee-------eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCC
Q 018293          186 FDRSVVMKDARI------STHSG-----FKW-------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS  247 (358)
Q Consensus       186 ~dg~i~i~d~~~------~~~~~-----~~~-------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~  247 (358)
                      .||.|++||++.      .+...     ...       .+...+.+++|+|++  ++++++.||.|++||+++.      
T Consensus       146 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~------  217 (397)
T 1sq9_A          146 VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTL------  217 (397)
T ss_dssp             TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTT------
T ss_pred             CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCC------
Confidence            999999999998      65554     332       367889999999965  9999999999999999986      


Q ss_pred             CCCCccEEEee---c---CCceeEEEecCCCCcEEEEEeCC---CcEEEEecCCCCceeeEecCC-------------CC
Q 018293          248 TSQQSSFTLHA---H---DKAVCTISYNPLVPNLLATGSTD---KMVKLWDLSNNQPSCIASRNP-------------KA  305 (358)
Q Consensus       248 ~~~~~~~~~~~---~---~~~i~~i~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~-------------~~  305 (358)
                         ..+..+..   |   ...|.+++|+|++ .+|++++.|   |.|++||+++++  .+..+..             |.
T Consensus       218 ---~~~~~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~  291 (397)
T 1sq9_A          218 ---RPLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGE--RIGSLSVPTHSSQASLGEFAHS  291 (397)
T ss_dssp             ---EEEEEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCC--EEEEECBC--------CCBSBS
T ss_pred             ---ceeEEEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCc--ccceeccCcccccccccccccC
Confidence               67778888   8   9999999999998 899999999   999999999887  4556666             88


Q ss_pred             ceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          306 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       306 ~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      ..|.+++|+|+++ +|++++.||.|++||+.+++.+....
T Consensus       292 ~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          292 SWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             SCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CcEEEEEECCCCC-EEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            9999999999999 48899999999999999988776655

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.7e-36  Score=292.68  Aligned_cols=285  Identities=18%  Similarity=0.292  Sum_probs=229.0

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|+|+++.++++..++     .+.+|+...+.....+..|    ...+.++.|       +|++++|++|+.||.|+||
T Consensus       621 ~~~s~~~~~l~s~~~d~-----~i~vw~~~~~~~~~~~~~h----~~~v~~~~~-------s~~~~~l~s~~~d~~v~vw  684 (1249)
T 3sfz_A          621 ACFSQDGQRIASCGADK-----TLQVFKAETGEKLLDIKAH----EDEVLCCAF-------SSDDSYIATCSADKKVKIW  684 (1249)
T ss_dssp             EEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEECCC----SSCEEEEEE-------CTTSSEEEEEETTSEEEEE
T ss_pred             EEECCCCCEEEEEeCCC-----eEEEEECCCCCEEEEeccC----CCCEEEEEE-------ecCCCEEEEEeCCCeEEEE
Confidence            47899999999998776     7888888765322222222    233345555       8999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC-CCcEEEEEEcCCeEEEEECCCCceee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILASASADKQVKIWDVAAGKCNL  159 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~  159 (358)
                      |+.+++..                           ..+.+|...|.+++|+|+ +..++++|+.|+.|++||+.+++++.
T Consensus       685 d~~~~~~~---------------------------~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~  737 (1249)
T 3sfz_A          685 DSATGKLV---------------------------HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN  737 (1249)
T ss_dssp             ETTTCCEE---------------------------EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE
T ss_pred             ECCCCceE---------------------------EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh
Confidence            99764432                           244579999999999995 25589999999999999999999999


Q ss_pred             eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc------------------------------------
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF------------------------------------  203 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------------------------------------  203 (358)
                      .+.+|...|.+++|+|++ .++++++.||.|++||++++.....                                    
T Consensus       738 ~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~  816 (1249)
T 3sfz_A          738 TMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA  816 (1249)
T ss_dssp             EECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE
T ss_pred             eecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE
Confidence            999999999999999999 8999999999999999876532110                                    


Q ss_pred             -------------------eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCcee
Q 018293          204 -------------------KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC  264 (358)
Q Consensus       204 -------------------~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~  264 (358)
                                         ...+...+.+++|+|+ +..+++++.||.|++||+.++         .....+.+|...|.
T Consensus       817 ~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~v~vwd~~~~---------~~~~~~~~h~~~v~  886 (1249)
T 3sfz_A          817 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY-DHLAVIALSQYCVELWNIDSR---------LKVADCRGHLSWVH  886 (1249)
T ss_dssp             ETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSS-TTEEEEECSSSCEEEEETTTT---------EEEEEECCCSSCEE
T ss_pred             cCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCC---------ceeeecCCCccceE
Confidence                               0134567889999995 568999999999999999886         67778888999999


Q ss_pred             EEEecCCCCcEEEEEeCCCcEEEEecCCC---------------------------------------------------
Q 018293          265 TISYNPLVPNLLATGSTDKMVKLWDLSNN---------------------------------------------------  293 (358)
Q Consensus       265 ~i~~~~~~~~~l~~~~~dg~i~i~d~~~~---------------------------------------------------  293 (358)
                      +++|+|++ .+|++++.||.|++||+.+.                                                   
T Consensus       887 ~v~~spdg-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  965 (1249)
T 3sfz_A          887 GVMFSPDG-SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS  965 (1249)
T ss_dssp             EEEECTTS-SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred             EEEECCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEE
Confidence            99999987 78888888988888885320                                                   


Q ss_pred             --------------------------CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          294 --------------------------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       294 --------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                                                .........+|...|.+++|+|++++ +++++.||.|++||+.+++..
T Consensus       966 ~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A          966 CCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKT-LISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSC-EEEECSSSBEEEEETTTTEEE
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCE-EEEEcCCCEEEEEECCCCceE
Confidence                                      00123445678889999999999995 889999999999999987655

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.5e-35  Score=250.58  Aligned_cols=277  Identities=15%  Similarity=0.174  Sum_probs=217.8

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCc-eEEecCCCCeEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVGSMEPAIEI   79 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~v   79 (358)
                      ++|+|+++.|+++..++     .+++|+...+.. .............+.++.|       +|+++ +|++|+.||.|++
T Consensus        17 ~~~s~~~~~l~~~~~d~-----~v~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~-------~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A           17 IKIIPSKSLLLITSWDG-----SLTVYKFDIQAK-NVDLLQSLRYKHPLLCCNF-------IDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EEEEGGGTEEEEEETTS-----EEEEEEEETTTT-EEEEEEEEECSSCEEEEEE-------EESSSEEEEEEETTSCEEE
T ss_pred             EEEcCCCCEEEEEcCCC-----eEEEEEeCCCCc-cccceeeeecCCceEEEEE-------CCCCCcEEEEEcCCCeEEE
Confidence            46899999999997776     677777665421 1111112233444556666       78999 9999999999999


Q ss_pred             EEc-ccccCcCceeecCCcccccccccccCCceeccccccCC--CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC--
Q 018293           80 WDL-DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS--HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA--  154 (358)
Q Consensus        80 w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~--  154 (358)
                      ||+ .+...                            ..+.+  |...|.+++|+|  +.+|++++.|+.|++||+++  
T Consensus        84 wd~~~~~~~----------------------------~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~  133 (342)
T 1yfq_A           84 VDLIGSPSF----------------------------QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYG  133 (342)
T ss_dssp             ECSSSSSSE----------------------------EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHT
T ss_pred             EEeccCCce----------------------------EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccc
Confidence            998 64321                            23446  999999999999  46999999999999999988  


Q ss_pred             -------CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc-CCCc--cceeeecCCeeeEEEcC-CCCCe
Q 018293          155 -------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHS--GFKWAVAADVESLAWDP-HAEHS  223 (358)
Q Consensus       155 -------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~--~~~~~~~~~i~~~~~~~-~~~~~  223 (358)
                             ++++..+. |...+.+++|+|++   +++++.|+.|++||++. ....  .....+...+.+++|+| ++ .+
T Consensus       134 ~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~  208 (342)
T 1yfq_A          134 DGVIAVKNLNSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ-EG  208 (342)
T ss_dssp             TBCEEEEESCSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG-CE
T ss_pred             cccccccCCeeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC-CE
Confidence                   77777777 88999999999875   89999999999999998 5432  22345677899999999 75 58


Q ss_pred             EEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCC---------ceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293          224 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK---------AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       224 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---------~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~  294 (358)
                      +++++.||.|++|+++.....   ........+..|..         .|.+++|+|++ .+|++++.||.|++||+.+++
T Consensus       209 l~~~~~dg~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          209 YACSSIDGRVAVEFFDDQGDD---YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             EEEEETTSEEEEEECCTTCCS---TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE
T ss_pred             EEEEecCCcEEEEEEcCCCcc---cccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCccHh
Confidence            999999999999999865100   00145666777755         99999999998 899999999999999999887


Q ss_pred             ceeeEecCCC-CceeEEEEEcCCCCeEEEEEccCCe-EEEEE
Q 018293          295 PSCIASRNPK-AGAVFSVAFSEDSPFVLAIGGSKGK-LEIWD  334 (358)
Q Consensus       295 ~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~-i~vw~  334 (358)
                        .+..+..| ..+|.+++  |+++ +|++++.||. .+.|.
T Consensus       285 --~~~~~~~~h~~~v~~~~--~~~~-~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          285 --KIKNFAKFNEDSVVKIA--CSDN-ILCLATSDDTFKTNAA  321 (342)
T ss_dssp             --EEEECCCCSSSEEEEEE--ECSS-EEEEEEECTHHHHCSS
T ss_pred             --HhhhhhcccCCCceEec--CCCC-eEEEEecCCccccccc
Confidence              56678888 99999999  9999 5899999998 44444

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.7e-36  Score=256.73  Aligned_cols=249  Identities=17%  Similarity=0.171  Sum_probs=196.8

Q ss_pred             cccCCC-ceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           60 KDREKG-NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        60 ~~s~~~-~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      +|+|++ ++|++|+.||.|+|||+.+.+...                         .....+|...|.+++|+|+++.+|
T Consensus        80 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------------------------~~~~~~h~~~v~~~~~~~~~~~~l  134 (383)
T 3ei3_B           80 EWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-------------------------FIQGMGPGDAITGMKFNQFNTNQL  134 (383)
T ss_dssp             EECSSCTTEEEEEEBTSCEEEEETTSTTCEE-------------------------EECCCSTTCBEEEEEEETTEEEEE
T ss_pred             EECCCCCCEEEEEcCCCeEEEEeCCCcccce-------------------------eeecCCcCCceeEEEeCCCCCCEE
Confidence            348898 999999999999999997543322                         112346999999999999547899


Q ss_pred             EEEEcCCeEEEEECCCCceeeeecc---cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEE
Q 018293          139 ASASADKQVKIWDVAAGKCNLTLEH---HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA  215 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  215 (358)
                      ++++.|+.|++||+++ +.+..+..   |...|.+++|+|++ .++++++.|+.|++||++ ++.......|...|.+++
T Consensus       135 ~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~  211 (383)
T 3ei3_B          135 FVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAE  211 (383)
T ss_dssp             EEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEE
T ss_pred             EEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEE
Confidence            9999999999999986 44555543   44789999999999 899999999999999994 445555667889999999


Q ss_pred             EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecC-CCCcEEEEEeCCCcEEEEecCCCC
Q 018293          216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP-LVPNLLATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~l~~~~~dg~i~i~d~~~~~  294 (358)
                      |+|++..++++++.|+.|++||+++.....     .....+ .|...|.+++|+| ++ .+|++++.|+.|++||+++++
T Consensus       212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~-~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          212 FNPRCDWLMATSSVDATVKLWDLRNIKDKN-----SYIAEM-PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWS  284 (383)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEEGGGCCSTT-----CEEEEE-ECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTT
T ss_pred             ECCCCCCEEEEEeCCCEEEEEeCCCCCccc-----ceEEEe-cCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCc
Confidence            999776699999999999999999853211     334444 7999999999999 87 899999999999999999876


Q ss_pred             ceeeEecC-----CCC----------ceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293          295 PSCIASRN-----PKA----------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       295 ~~~~~~~~-----~~~----------~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                      ........     .|.          +.+..++|+|++++   +++.||.|++||+.+++.+..+..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~~~~~~l~~  348 (383)
T 3ei3_B          285 KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSGGLVHQLRD  348 (383)
T ss_dssp             SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTCCEEEEECB
T ss_pred             cccccccccccccccccceEEeccCCCCceEEEecCCccc---ccCCCCeEEEEecCCCceeeeecC
Confidence            43322211     112          34555777777763   778999999999999988776554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.3e-36  Score=260.01  Aligned_cols=250  Identities=10%  Similarity=0.116  Sum_probs=180.9

Q ss_pred             ccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCC--------
Q 018293           61 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK--------  132 (358)
Q Consensus        61 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------  132 (358)
                      +++++.+||+|+.|++|+|||..+++...                      ......+.+|.+.|++++|+|        
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~----------------------~~~~~~~~gH~~~v~~v~~~p~~~~~~~~  154 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIIT----------------------QHVLGGKSGHHNFVNDIDIADVYSADNRL  154 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEE----------------------EEEECTTTSCSSCEEEEEEEEEECTTCSE
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccce----------------------eeeecccCCCCCceEEEEEccccccccCC
Confidence            45678899999999999999997654322                      223346779999999999987        


Q ss_pred             CCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc---------
Q 018293          133 EFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---------  203 (358)
Q Consensus       133 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---------  203 (358)
                      + +++||+|+.|++|+|||+.++.++..+..|..++.+++|+|++..+|++++.|++|++||+++++....         
T Consensus       155 d-~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~  233 (393)
T 4gq1_A          155 A-EQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN  233 (393)
T ss_dssp             E-EEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred             C-CCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence            5 679999999999999999988888888889999999999999867899999999999999987653221         


Q ss_pred             ----------------eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCC----------CCCccEEEe
Q 018293          204 ----------------KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST----------SQQSSFTLH  257 (358)
Q Consensus       204 ----------------~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~----------~~~~~~~~~  257 (358)
                                      ...+...+.++.|.+.++..+++++.|+.+++||+..........          .........
T Consensus       234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  313 (393)
T 4gq1_A          234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS  313 (393)
T ss_dssp             CCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEEC
T ss_pred             ceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccc
Confidence                            123456788899875466799999999999999998763211000          000111111


Q ss_pred             ecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          258 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       258 ~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      .+...+..+.+.+.+..++++|+.||.|++||+.+++.  ......|..+|.+++|+|||++ ||+++.+| +.+|.+..
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--~~~~~~~~~~V~svafspdG~~-LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          314 LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS--NSIPIQLGMPIVDFCWHQDGSH-LAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC--CEEEEECSSCEEEEEECTTSSE-EEEEESSE-EEEEEEGG
T ss_pred             ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE--EEEecCCCCcEEEEEEcCCCCE-EEEEeCCC-eEEEEEeC
Confidence            22222222323333335677888999999999998874  4445567789999999999994 88887665 77776643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.3e-35  Score=258.38  Aligned_cols=271  Identities=21%  Similarity=0.357  Sum_probs=223.5

Q ss_pred             ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEc
Q 018293            3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDL   82 (358)
Q Consensus         3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~   82 (358)
                      ++++++.|++|..++     .+.+|+...+.....+..|    ...+.++.|       +  +++|++|+.||.|++||+
T Consensus       125 ~~~~g~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~h----~~~v~~~~~-------~--~~~l~s~~~dg~i~vwd~  186 (445)
T 2ovr_B          125 LQFCGNRIVSGSDDN-----TLKVWSAVTGKCLRTLVGH----TGGVWSSQM-------R--DNIIISGSTDRTLKVWNA  186 (445)
T ss_dssp             EEEETTEEEEEETTS-----CEEEEETTTCCEEEECCCC----SSCEEEEEE-------E--TTEEEEEETTSCEEEEET
T ss_pred             EEEcCCEEEEEECCC-----cEEEEECCCCcEEEEEcCC----CCCEEEEEe-------c--CCEEEEEeCCCeEEEEEC
Confidence            567889999998877     7888887765322222222    223345544       3  679999999999999999


Q ss_pred             ccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeec
Q 018293           83 DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE  162 (358)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  162 (358)
                      .+++..                           ..+.+|...|.++.|++   ..+++|+.||.|++||+.+++.+..+.
T Consensus       187 ~~~~~~---------------------------~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~  236 (445)
T 2ovr_B          187 ETGECI---------------------------HTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLM  236 (445)
T ss_dssp             TTTEEE---------------------------EEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEE
T ss_pred             CcCcEE---------------------------EEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEc
Confidence            764332                           24557999999999964   479999999999999999999999999


Q ss_pred             ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCC
Q 018293          163 HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK  242 (358)
Q Consensus       163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~  242 (358)
                      +|...|.+++|  ++ ..+++++.||.|++||+++++.......+...+.++.|   ++..+++++.||.|++||++++ 
T Consensus       237 ~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~-  309 (445)
T 2ovr_B          237 GHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG-  309 (445)
T ss_dssp             CCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTC-
T ss_pred             CCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCC-
Confidence            99999999999  45 78999999999999999988877666678889999999   3458999999999999999987 


Q ss_pred             CCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCC---CCceeEEEEEcCCCCe
Q 018293          243 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP---KAGAVFSVAFSEDSPF  319 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~  319 (358)
                              ..+..+..|...+.++.+++   .++++|+.||.|++||+++++.  +..+..   |...|.+++|++  + 
T Consensus       310 --------~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~--~-  373 (445)
T 2ovr_B          310 --------NCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQC--LQTLQGPNKHQSAVTCLQFNK--N-  373 (445)
T ss_dssp             --------CEEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCE--EEEECSTTSCSSCEEEEEECS--S-
T ss_pred             --------CEEEEEcCCcccEEEEEEeC---CEEEEEeCCCeEEEEECCCCcE--EEEEccCCCCCCCEEEEEECC--C-
Confidence                    77888899999999988863   7999999999999999998874  444444   888999999964  4 


Q ss_pred             EEEEEccCCeEEEEEccCCCccccc
Q 018293          320 VLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       320 ~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      .+++|+.||.|++||+.+++.+...
T Consensus       374 ~l~s~~~dg~v~iwd~~~~~~~~~~  398 (445)
T 2ovr_B          374 FVITSSDDGTVKLWDLKTGEFIRNL  398 (445)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCceeeee
Confidence            5899999999999999999877665

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.6e-35  Score=247.29  Aligned_cols=251  Identities=17%  Similarity=0.258  Sum_probs=208.1

Q ss_pred             CcccceeeecCCccccCC-CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccE
Q 018293           47 AFPLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV  125 (358)
Q Consensus        47 ~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  125 (358)
                      ..+.+++|       +|+ +++||+|+.||+|+|||+.+.+...                      ..+...+.+|...|
T Consensus        39 ~~V~~v~~-------sp~~~~~l~S~s~D~~i~vWd~~~~~~~~----------------------~~~~~~l~~h~~~V   89 (340)
T 4aow_A           39 GWVTQIAT-------TPQFPDMILSASRDKTIIMWKLTRDETNY----------------------GIPQRALRGHSHFV   89 (340)
T ss_dssp             SCEEEEEE-------CTTCTTEEEEEETTSCEEEEEECCSSSCS----------------------EEEEEEECCCSSCE
T ss_pred             CCEEEEEE-------eCCCCCEEEEEcCCCeEEEEECCCCCccc----------------------ceeeEEEeCCCCCE
Confidence            34456666       787 6899999999999999997644322                      22334567899999


Q ss_pred             EEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-ce
Q 018293          126 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FK  204 (358)
Q Consensus       126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~  204 (358)
                      .+++|+|+ +.+|++++.|+.|++|+............+...+..+.+++++ .++++++.|+.+++||+....... ..
T Consensus        90 ~~~~~s~d-g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~  167 (340)
T 4aow_A           90 SDVVISSD-GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQD  167 (340)
T ss_dssp             EEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred             EEEEECCC-CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEe
Confidence            99999999 6799999999999999999998888888888899999999998 889999999999999987654332 23


Q ss_pred             eeecCCeeeEEEcCCCC-CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC
Q 018293          205 WAVAADVESLAWDPHAE-HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  283 (358)
Q Consensus       205 ~~~~~~i~~~~~~~~~~-~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg  283 (358)
                      ..+...+..++|+++.. .++++++.|+.|++||+++.         .....+.+|..+|++++|+|++ .+|++|+.||
T Consensus       168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---------~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg  237 (340)
T 4aow_A          168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---------KLKTNHIGHTGYLNTVTVSPDG-SLCASGGKDG  237 (340)
T ss_dssp             SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTC
T ss_pred             ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC---------ceeeEecCCCCcEEEEEECCCC-CEEEEEeCCC
Confidence            45678899999998654 46788999999999999987         7788889999999999999998 8999999999


Q ss_pred             cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          284 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       284 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      .|++||+++.+.  +..+.. ...|.+++|+|++.  +++++.|+.|++||+.++..+..
T Consensus       238 ~i~iwd~~~~~~--~~~~~~-~~~v~~~~~~~~~~--~~~~~~d~~i~iwd~~~~~~~~~  292 (340)
T 4aow_A          238 QAMLWDLNEGKH--LYTLDG-GDIINALCFSPNRY--WLCAATGPSIKIWDLEGKIIVDE  292 (340)
T ss_dssp             EEEEEETTTTEE--EEEEEC-SSCEEEEEECSSSS--EEEEEETTEEEEEETTTTEEEEE
T ss_pred             eEEEEEeccCce--eeeecC-CceEEeeecCCCCc--eeeccCCCEEEEEECCCCeEEEe
Confidence            999999998874  444443 46799999999986  44577899999999988765544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7.7e-36  Score=280.49  Aligned_cols=249  Identities=20%  Similarity=0.304  Sum_probs=215.0

Q ss_pred             cccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEE
Q 018293           48 FPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  127 (358)
Q Consensus        48 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  127 (358)
                      .+.++.|       +|++++||+|+.||.|+|||+.++...                           ..+.+|...|.+
T Consensus        15 ~v~~i~~-------sp~~~~la~~~~~g~v~iwd~~~~~~~---------------------------~~~~~~~~~v~~   60 (814)
T 3mkq_A           15 RVKGIDF-------HPTEPWVLTTLYSGRVEIWNYETQVEV---------------------------RSIQVTETPVRA   60 (814)
T ss_dssp             CEEEEEE-------CSSSSEEEEEETTSEEEEEETTTTEEE---------------------------EEEECCSSCEEE
T ss_pred             ceEEEEE-------CCCCCEEEEEeCCCEEEEEECCCCceE---------------------------EEEecCCCcEEE
Confidence            3446655       899999999999999999999754332                           244579999999


Q ss_pred             EecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC-CCccceee
Q 018293          128 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGFKWA  206 (358)
Q Consensus       128 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~  206 (358)
                      ++|+|+ +.+|++|+.||.|++||+.+++.+..+.+|...|++++|+|++ .++++++.||.|++||+.++ ........
T Consensus        61 ~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  138 (814)
T 3mkq_A           61 GKFIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEG  138 (814)
T ss_dssp             EEEEGG-GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred             EEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence            999999 6799999999999999999999999999999999999999999 88999999999999999887 33444556


Q ss_pred             ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecC-CceeEEEecC--CCCcEEEEEeCCC
Q 018293          207 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNP--LVPNLLATGSTDK  283 (358)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~--~~~~~l~~~~~dg  283 (358)
                      +...+.+++|+|.++..+++++.||.|++||++..         .....+..+. ..+.+++|+|  ++ .+|++++.||
T Consensus       139 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg  208 (814)
T 3mkq_A          139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS---------TPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDL  208 (814)
T ss_dssp             CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS---------SCSEEEECCCTTCCCEEEECCSTTC-CEEEEECTTS
T ss_pred             CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------cceeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCC
Confidence            88899999999955669999999999999999876         4555555544 8899999999  77 8999999999


Q ss_pred             cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          284 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       284 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      .|++||+++++  ....+..|...|.+++|+|+++ ++++++.||.|++||+.+++.+....
T Consensus       209 ~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~  267 (814)
T 3mkq_A          209 TIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLN  267 (814)
T ss_dssp             EEEEEETTTTE--EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred             EEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEee
Confidence            99999999887  5666778899999999999999 58999999999999999887665543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.6e-35  Score=243.10  Aligned_cols=214  Identities=23%  Similarity=0.357  Sum_probs=180.5

Q ss_pred             ccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCC--CceeeeecccccceeeEEEcCC--CCcEEEEEeCCCcEEE
Q 018293          117 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA--GKCNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVM  192 (358)
Q Consensus       117 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i  192 (358)
                      .+.+|...|.+++|+|+ +++|++|+.|++|++||+..  .+++..+.+|..+|.+++|+++  + .+|++++.|++|++
T Consensus         4 ~~~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVMI   81 (297)
T ss_dssp             ECCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTEEEE
T ss_pred             eccCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCEEEE
Confidence            45689999999999999 67999999999999999974  3678889999999999999864  5 89999999999999


Q ss_pred             EEcccCC--CccceeeecCCeeeEEEcCCC-CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEec
Q 018293          193 KDARIST--HSGFKWAVAADVESLAWDPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN  269 (358)
Q Consensus       193 ~d~~~~~--~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  269 (358)
                      ||+++++  .......|...|.+++|+|+. +.++++++.||.|++||++....       .....+.+|...|.+++|+
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~-------~~~~~~~~h~~~v~~~~~~  154 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT-------TSPIIIDAHAIGVNSASWA  154 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC-------BCCEEEECCSSCEEEEEEC
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc-------eeeeeeecccCccceEeec
Confidence            9998764  233344578899999999962 56899999999999999987521       2245678899999999999


Q ss_pred             CCC------------CcEEEEEeCCCcEEEEecCCCCc--eeeEecCCCCceeEEEEEcCCC--CeEEEEEccCCeEEEE
Q 018293          270 PLV------------PNLLATGSTDKMVKLWDLSNNQP--SCIASRNPKAGAVFSVAFSEDS--PFVLAIGGSKGKLEIW  333 (358)
Q Consensus       270 ~~~------------~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~vw  333 (358)
                      |++            +.+|++|+.|+.|++||+++++.  .....+.+|...|.+++|+|++  ..+|++++.|++|++|
T Consensus       155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iW  234 (297)
T 2pm7_B          155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW  234 (297)
T ss_dssp             CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence            973            26999999999999999987652  2445678999999999999985  2369999999999999


Q ss_pred             EccCCC
Q 018293          334 DTLSDA  339 (358)
Q Consensus       334 ~~~~~~  339 (358)
                      |+.++.
T Consensus       235 d~~~~~  240 (297)
T 2pm7_B          235 TQDNEQ  240 (297)
T ss_dssp             EESSTT
T ss_pred             EeCCCC
Confidence            998753

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-36  Score=264.85  Aligned_cols=257  Identities=14%  Similarity=0.138  Sum_probs=199.3

Q ss_pred             CcccceeeecCCccccC-CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccE
Q 018293           47 AFPLCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV  125 (358)
Q Consensus        47 ~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  125 (358)
                      ..+.++.|       +| ++++|++|+.||.|+|||+.+.+....                     ......+ +|...|
T Consensus        64 ~~V~~~~~-------s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~---------------------~~~~~~~-~h~~~v  114 (437)
T 3gre_A           64 NSITSSAV-------SPGETPYLITGSDQGVIKIWNLKEIIVGEV---------------------YSSSLTY-DCSSTV  114 (437)
T ss_dssp             SCEEEEEE-------ECSSSCEEEEEETTSEEEEEEHHHHHTTCC---------------------CSCSEEE-ECSSCE
T ss_pred             CceEEEEE-------CCCCCCEEEEecCCceEEEeECcccccCcc---------------------cceeeec-cCCCCE
Confidence            34446655       88 999999999999999999976221110                     0001111 489999


Q ss_pred             EEEecCCCCCcEEEEEEcCCeEEEEECC---CCceeeeecc------------cccceeeEE--EcCCCCcEEEEEeCCC
Q 018293          126 LGLAWNKEFRNILASASADKQVKIWDVA---AGKCNLTLEH------------HTDKVQAVA--WNHHSPQILLSGSFDR  188 (358)
Q Consensus       126 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~~l~~~~~dg  188 (358)
                      .+++|+|+ +.+|++|+.||.|++||++   +++....+..            +...+.++.  +++++ .++++++.|+
T Consensus       115 ~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~  192 (437)
T 3gre_A          115 TQITMIPN-FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLS  192 (437)
T ss_dssp             EEEEECTT-SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTS
T ss_pred             EEEEEeCC-CCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCC
Confidence            99999998 6799999999999999994   5555444332            344555555  45667 8999999999


Q ss_pred             cEEEEEcccCCCccceee--ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe-ecCCceeE
Q 018293          189 SVVMKDARISTHSGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCT  265 (358)
Q Consensus       189 ~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~i~~  265 (358)
                      .|++||+++.+.......  +...|.+++|+|+ +.++++|+.||.|++||++.+         ..+..+. .|..+|.+
T Consensus       193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~v~~  262 (437)
T 3gre_A          193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRFN---------VLIRSWSFGDHAPITH  262 (437)
T ss_dssp             EEEEEETTTCCEEEEEECCGGGCCEEEEEECTT-SCEEEEEETTSCEEEEETTTT---------EEEEEEBCTTCEEEEE
T ss_pred             eEEEEeCCCCeeeEEEccCCCCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCCc---------cEEEEEecCCCCceEE
Confidence            999999999887765655  7889999999995 669999999999999999986         6666665 77889999


Q ss_pred             EEecC----CCCcEEEEEeCCCcEEEEecCCCCceeeEe----------------------cCC--CCceeEEEEEcCCC
Q 018293          266 ISYNP----LVPNLLATGSTDKMVKLWDLSNNQPSCIAS----------------------RNP--KAGAVFSVAFSEDS  317 (358)
Q Consensus       266 i~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------~~~--~~~~v~~~~~~~~~  317 (358)
                      ++|+|    ++ .+|++|+.||.|++||+++++......                      +.+  |...|.+++|+ ++
T Consensus       263 ~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~  340 (437)
T 3gre_A          263 VEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND  340 (437)
T ss_dssp             EEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT
T ss_pred             EEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc
Confidence            96655    45 799999999999999999876332222                      112  67779999999 66


Q ss_pred             CeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293          318 PFVLAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       318 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                      + +|++|+.||.|++||+.+++.+.....+
T Consensus       341 ~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~  369 (437)
T 3gre_A          341 K-ILLTDEATSSIVMFSLNELSSSKAVISP  369 (437)
T ss_dssp             E-EEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred             e-EEEecCCCCeEEEEECCCcccceEEecc
Confidence            6 5899999999999999999887765543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-36  Score=278.43  Aligned_cols=249  Identities=23%  Similarity=0.341  Sum_probs=207.0

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC-CcEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNIL  138 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l  138 (358)
                      +|+|++++|++|+.||.|+|||+...                         .......+.+|.+.|++++|+|+. +.+|
T Consensus        16 ~~s~dg~~latg~~dg~I~vwd~~~~-------------------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l   70 (753)
T 3jro_A           16 VLDYYGKRLATCSSDKTIKIFEVEGE-------------------------THKLIDTLTGHEGPVWRVDWAHPKFGTIL   70 (753)
T ss_dssp             CCCSSSCCEEEEETTTEEEEEEEETT-------------------------EEEEEEEECCCSSCEEEEEECCTTSCSEE
T ss_pred             EECCCCCeEEEEECCCcEEEEecCCC-------------------------CCccceeccCCcCceEEEEecCCCCCCEE
Confidence            34899999999999999999998631                         123344566899999999998762 5699


Q ss_pred             EEEEcCCeEEEEECCCCc--eeeeecccccceeeEEEcCC--CCcEEEEEeCCCcEEEEEcccCCCc--cceeeecCCee
Q 018293          139 ASASADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTHS--GFKWAVAADVE  212 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~i~  212 (358)
                      ++|+.||.|++||+.+++  .+..+..|...|.+++|+|+  + ..+++++.||.|++||++.....  .....+...|.
T Consensus        71 ~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~  149 (753)
T 3jro_A           71 ASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN  149 (753)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEE
T ss_pred             EEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceE
Confidence            999999999999999886  67788889999999999999  7 89999999999999999887433  33456788999


Q ss_pred             eEEEcCC------------CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC--CcEEEE
Q 018293          213 SLAWDPH------------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--PNLLAT  278 (358)
Q Consensus       213 ~~~~~~~------------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~l~~  278 (358)
                      +++|+|.            ++..+++|+.||.|++||++.....     ......+.+|...|++++|+|++  +.+|++
T Consensus       150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-----~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s  224 (753)
T 3jro_A          150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSPTVLLRSYLAS  224 (753)
T ss_dssp             EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred             EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc-----ceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence            9999995            3668999999999999999876321     13455678899999999999993  389999


Q ss_pred             EeCCCcEEEEecCCCCce---eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          279 GSTDKMVKLWDLSNNQPS---CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       279 ~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      |+.||.|++||+++++..   .......|...|.+++|+|++++ +++|+.||.|++|++..+..
T Consensus       225 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~-l~s~s~Dg~I~vwd~~~~~~  288 (753)
T 3jro_A          225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKENLEGK  288 (753)
T ss_dssp             EESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCC-EEEECSSSCEECCBCCSSSC
T ss_pred             EecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCE-EEEEcCCCEEEEEecCCCCC
Confidence            999999999999986421   23334558889999999999995 88999999999999986543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-34  Score=245.98  Aligned_cols=250  Identities=15%  Similarity=0.245  Sum_probs=209.6

Q ss_pred             CcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEE
Q 018293           47 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL  126 (358)
Q Consensus        47 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  126 (358)
                      ..+.++.|       +|++++|++|+.||.|++||+.+++.                           ...+.+|...|.
T Consensus        33 ~~v~~~~~-------s~~~~~l~~~~~dg~i~vwd~~~~~~---------------------------~~~~~~h~~~v~   78 (369)
T 3zwl_B           33 RPLTQVKY-------NKEGDLLFSCSKDSSASVWYSLNGER---------------------------LGTLDGHTGTIW   78 (369)
T ss_dssp             SCEEEEEE-------CTTSCEEEEEESSSCEEEEETTTCCE---------------------------EEEECCCSSCEE
T ss_pred             ceEEEEEE-------cCCCCEEEEEeCCCEEEEEeCCCchh---------------------------hhhhhhcCCcEE
Confidence            33446655       89999999999999999999975433                           234557999999


Q ss_pred             EEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCC-----CcEEEEEcccCCCc
Q 018293          127 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARISTHS  201 (358)
Q Consensus       127 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~  201 (358)
                      +++|+|+ +++|++++.||.|++||+.+++.+..+. +...+.+++|+|++ .++++++.+     +.|.+||+......
T Consensus        79 ~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~  155 (369)
T 3zwl_B           79 SIDVDCF-TKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSAT  155 (369)
T ss_dssp             EEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTT
T ss_pred             EEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccc
Confidence            9999998 6799999999999999999999988888 88899999999999 889999988     99999999876543


Q ss_pred             cc-----------eeeecC--CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEe
Q 018293          202 GF-----------KWAVAA--DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY  268 (358)
Q Consensus       202 ~~-----------~~~~~~--~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  268 (358)
                      ..           ...+..  .+.+++|+|+ +..+++++.||.|++||+++.        ......+..|...|.+++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~v~~~~~  226 (369)
T 3zwl_B          156 HELTKVSEEPIHKIITHEGLDAATVAGWSTK-GKYIIAGHKDGKISKYDVSNN--------YEYVDSIDLHEKSISDMQF  226 (369)
T ss_dssp             CCEEEECSSCSEEEECCTTCCCEEEEEECGG-GCEEEEEETTSEEEEEETTTT--------TEEEEEEECCSSCEEEEEE
T ss_pred             eeecccccceeeeccCCcCccceeEEEEcCC-CCEEEEEcCCCEEEEEECCCC--------cEeEEEEecCCCceeEEEE
Confidence            21           222333  8999999995 558999999999999999873        2677888889999999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC--------------eEEEEE
Q 018293          269 NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG--------------KLEIWD  334 (358)
Q Consensus       269 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------------~i~vw~  334 (358)
                      +|++ .+|++++.|+.|++||+++++...  .+. +...+.+++|+|++++ +++++.++              .+++||
T Consensus       227 ~~~~-~~l~~~~~d~~i~v~d~~~~~~~~--~~~-~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~i~~~d  301 (369)
T 3zwl_B          227 SPDL-TYFITSSRDTNSFLVDVSTLQVLK--KYE-TDCPLNTAVITPLKEF-IILGGGQEAKDVTTTSANEGKFEARFYH  301 (369)
T ss_dssp             CTTS-SEEEEEETTSEEEEEETTTCCEEE--EEE-CSSCEEEEEECSSSSE-EEEEECCC-------------CEEEEEE
T ss_pred             CCCC-CEEEEecCCceEEEEECCCCceee--eec-CCCCceeEEecCCCce-EEEeecCCCceEEEEecCCCcceeEEEe
Confidence            9998 899999999999999999987433  333 6678999999999995 77777777              899999


Q ss_pred             ccCCCcccccccc
Q 018293          335 TLSDAGISNRFSK  347 (358)
Q Consensus       335 ~~~~~~~~~~~~~  347 (358)
                      +.+++.+.....+
T Consensus       302 ~~~~~~~~~~~~~  314 (369)
T 3zwl_B          302 KIFEEEIGRVQGH  314 (369)
T ss_dssp             TTTCCEEEEEECC
T ss_pred             cCCCcchhheecc
Confidence            9998877665444

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=252.08  Aligned_cols=251  Identities=17%  Similarity=0.269  Sum_probs=199.5

Q ss_pred             cCCcccceeeecCCccccCCCc-eEEecCC---CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCC
Q 018293           45 IPAFPLCMAWLDCPLKDREKGN-FMAVGSM---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS  120 (358)
Q Consensus        45 ~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (358)
                      ....+.++.|       +|++. ++++|+.   ||.|+|||+.+++....                          ...+
T Consensus        17 h~~~v~~~~~-------~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--------------------------~~~~   63 (357)
T 3i2n_A           17 FNYTVFDCKW-------VPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--------------------------REIE   63 (357)
T ss_dssp             CSSCEEEEEE-------CTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--------------------------EEEE
T ss_pred             CCCceEEEEE-------cCCCceEEEecCccCCCcEEEEEeCCCCcccce--------------------------eeec
Confidence            4445556666       88885 5567766   99999999975442211                          1125


Q ss_pred             CcccEEEEecCCCC--CcEEEEEEcCCeEEEEECCCCc-eeeeecccccceeeEEE------cCCCCcEEEEEeCCCcEE
Q 018293          121 HTDSVLGLAWNKEF--RNILASASADKQVKIWDVAAGK-CNLTLEHHTDKVQAVAW------NHHSPQILLSGSFDRSVV  191 (358)
Q Consensus       121 h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~~l~~~~~dg~i~  191 (358)
                      |...|.+++|+|++  +.+|++|+.||.|++||+.+++ .+..+.+|...|.+++|      +|++ .+|++++.||.|+
T Consensus        64 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~  142 (357)
T 3i2n_A           64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVK  142 (357)
T ss_dssp             ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEE
T ss_pred             ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEE
Confidence            88999999999984  5799999999999999999988 88899999999999965      6777 8999999999999


Q ss_pred             EEEcccCC-Cccceeeec----CCeeeEE----EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCc
Q 018293          192 MKDARIST-HSGFKWAVA----ADVESLA----WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA  262 (358)
Q Consensus       192 i~d~~~~~-~~~~~~~~~----~~i~~~~----~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  262 (358)
                      +||+++.+ .......+.    ..+.+++    |+| ++.++++++.||.|++||+++.         .. .....|...
T Consensus       143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~---------~~-~~~~~~~~~  211 (357)
T 3i2n_A          143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNM---------AL-RWETNIKNG  211 (357)
T ss_dssp             EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTT---------EE-EEEEECSSC
T ss_pred             EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccC---------ce-eeecCCCCc
Confidence            99999877 333333333    3788888    667 4569999999999999999876         33 445678899


Q ss_pred             eeEEEecC---CCCcEEEEEeCCCcEEEEecCCCCceeeE---ecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          263 VCTISYNP---LVPNLLATGSTDKMVKLWDLSNNQPSCIA---SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       263 i~~i~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      |.+++|+|   ++ .+|++++.||.|++||+++++.....   ....|...|.+++|+|+++.++++++.||.|++||+.
T Consensus       212 v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  290 (357)
T 3i2n_A          212 VCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE  290 (357)
T ss_dssp             EEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred             eEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence            99999999   77 89999999999999999886543222   2347899999999999998669999999999999998


Q ss_pred             CCCcc
Q 018293          337 SDAGI  341 (358)
Q Consensus       337 ~~~~~  341 (358)
                      ++...
T Consensus       291 ~~~~~  295 (357)
T 3i2n_A          291 YPIQR  295 (357)
T ss_dssp             CCSCC
T ss_pred             CCccc
Confidence            76543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.9e-35  Score=249.96  Aligned_cols=243  Identities=13%  Similarity=0.152  Sum_probs=200.9

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCc-EEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN-ILAS  140 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s  140 (358)
                      +|++++|++|+.||.|++|++.+.....                        ....+.+|...|.+++|+|+ +. +|++
T Consensus        20 s~~~~~l~~~~~d~~v~iw~~~~~~~~~------------------------~~~~~~~~~~~v~~~~~~~~-~~~~l~~   74 (342)
T 1yfq_A           20 IPSKSLLLITSWDGSLTVYKFDIQAKNV------------------------DLLQSLRYKHPLLCCNFIDN-TDLQIYV   74 (342)
T ss_dssp             EGGGTEEEEEETTSEEEEEEEETTTTEE------------------------EEEEEEECSSCEEEEEEEES-SSEEEEE
T ss_pred             cCCCCEEEEEcCCCeEEEEEeCCCCccc------------------------cceeeeecCCceEEEEECCC-CCcEEEE
Confidence            8899999999999999999997543111                        11123369999999999999 78 8999


Q ss_pred             EEcCCeEEEEEC-CCCceeeeecc--cccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc---------CCCccceeeec
Q 018293          141 ASADKQVKIWDV-AAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI---------STHSGFKWAVA  208 (358)
Q Consensus       141 ~~~dg~v~iwd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~  208 (358)
                      |+.||.|++||+ .+++. ..+.+  |...|.+++|+| + ..+++++.|+.|++||+++         .+..... .+.
T Consensus        75 ~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~  150 (342)
T 1yfq_A           75 GTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-KVK  150 (342)
T ss_dssp             EETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-SSC
T ss_pred             EcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEE-eeC
Confidence            999999999999 77754 67778  999999999999 6 8999999999999999987         6655433 378


Q ss_pred             CCeeeEEEcCCCCCeEEEEecCCeEEEEEccc-CCCCCCCCCCCccEEEeecCCceeEEEecC-CCCcEEEEEeCCCcEE
Q 018293          209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT-AKSDPDSTSQQSSFTLHAHDKAVCTISYNP-LVPNLLATGSTDKMVK  286 (358)
Q Consensus       209 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~l~~~~~dg~i~  286 (358)
                      ..+.+++|+|++   +++++.|+.|++||++. ...       ........|...+.+++|+| ++ .++++++.||.|+
T Consensus       151 ~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~  219 (342)
T 1yfq_A          151 NKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDD-------NGTIEESGLKYQIRDVALLPKEQ-EGYACSSIDGRVA  219 (342)
T ss_dssp             CCEEEEEECSSE---EEEEESTTEEEEEESSCCTTC-------CCEEEECSCSSCEEEEEECSGGG-CEEEEEETTSEEE
T ss_pred             CceEEEEecCCc---EEEEeCCCeEEEEECCccccc-------cceeeecCCCCceeEEEECCCCC-CEEEEEecCCcEE
Confidence            899999999853   99999999999999987 421       23345566788999999999 88 8999999999999


Q ss_pred             EEecCCC------CceeeEecCCCC---------ceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293          287 LWDLSNN------QPSCIASRNPKA---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       287 i~d~~~~------~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                      +|+++..      +  ....+..|.         ..|.+++|+|++++ |++++.||.|++||+.+++.+.....+
T Consensus       220 i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~  292 (342)
T 1yfq_A          220 VEFFDDQGDDYNSS--KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             EEECCTTCCSTTCT--TCEEEECCCCCTTCCSSCCCEEEEEECTTTCC-EEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             EEEEcCCCcccccc--cceeeecccccccccccceeEEEEEEcCCCCE-EEEecCCceEEEEcCccHhHhhhhhcc
Confidence            9999876      4  344445554         49999999999995 889999999999999998877665443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-36  Score=282.14  Aligned_cols=301  Identities=14%  Similarity=0.157  Sum_probs=206.7

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      |+|+| +++|+++..++     .+.+|+...+.....+.     .+..+.++       +|+|++++|++|+.||.|++|
T Consensus        64 l~fsp-g~~L~S~s~D~-----~v~lWd~~~~~~~~~~~-----~~~~V~~v-------~~sp~g~~l~sgs~dg~V~lw  125 (902)
T 2oaj_A           64 MRFVK-GIYLVVINAKD-----TVYVLSLYSQKVLTTVF-----VPGKITSI-------DTDASLDWMLIGLQNGSMIVY  125 (902)
T ss_dssp             EEEET-TTEEEEEETTC-----EEEEEETTTCSEEEEEE-----CSSCEEEE-------ECCTTCSEEEEEETTSCEEEE
T ss_pred             EEEcC-CCEEEEEECcC-----eEEEEECCCCcEEEEEc-----CCCCEEEE-------EECCCCCEEEEEcCCCcEEEE
Confidence            46899 78888887776     78888887652222222     22233344       448999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      |+.+.... ...+.               ........+.+|...|.+++|+|++...+++|+.||.| +||+++++++..
T Consensus       126 d~~~~~~~-~~~i~---------------~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~  188 (902)
T 2oaj_A          126 DIDRDQLS-SFKLD---------------NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQS  188 (902)
T ss_dssp             ETTTTEEE-EEEEC---------------CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEE
T ss_pred             ECCCCccc-cceec---------------cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEE
Confidence            99765431 10000               00000023467999999999999756789999999999 999999988887


Q ss_pred             eccc------------------ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc--e-----e----------
Q 018293          161 LEHH------------------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--K-----W----------  205 (358)
Q Consensus       161 ~~~~------------------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~-----~----------  205 (358)
                      +..|                  ...|.+++|+|++ .+|++++.||.|++||+++++....  .     .          
T Consensus       189 ~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~  267 (902)
T 2oaj_A          189 FIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDS  267 (902)
T ss_dssp             ECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCC
T ss_pred             EecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCC
Confidence            7655                  4779999999998 8999999999999999988764321  0     0          


Q ss_pred             -eecCCeeeEEEc----CCCCCeEEEEecC-----CeEEEEEc-------------------------------------
Q 018293          206 -AVAADVESLAWD----PHAEHSFVVSLED-----GTIKGFDI-------------------------------------  238 (358)
Q Consensus       206 -~~~~~i~~~~~~----~~~~~~~~~~~~d-----g~i~i~d~-------------------------------------  238 (358)
                       .+...|.+++|+    |++..++++|+.+     ..+.+|++                                     
T Consensus       268 ~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~  347 (902)
T 2oaj_A          268 STNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVN  347 (902)
T ss_dssp             SSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEE
T ss_pred             ccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEE
Confidence             123468888885    3333456666444     25666653                                     


Q ss_pred             ----------------------------------ccCCCCCCC---C-----C------------------------CCc
Q 018293          239 ----------------------------------RTAKSDPDS---T-----S------------------------QQS  252 (358)
Q Consensus       239 ----------------------------------~~~~~~~~~---~-----~------------------------~~~  252 (358)
                                                        .++......   .     .                        ...
T Consensus       348 ~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~  427 (902)
T 2oaj_A          348 ILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNK  427 (902)
T ss_dssp             EEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCC
T ss_pred             EEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCC
Confidence                                              111000000   0     0                        000


Q ss_pred             cEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCcee--eEe--c-----CCCCceeEEEEEcCCCCeEEEE
Q 018293          253 SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC--IAS--R-----NPKAGAVFSVAFSEDSPFVLAI  323 (358)
Q Consensus       253 ~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~--~-----~~~~~~v~~~~~~~~~~~~l~~  323 (358)
                      ...+.+|...+.+++|+|++ ++|++|+.|++|++||+.++....  ...  +     .+|...|.+++|+|+++ +||+
T Consensus       428 ~~~l~G~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~-~LAs  505 (902)
T 2oaj_A          428 DYLLKGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETL-ELAV  505 (902)
T ss_dssp             CCSCCCSBCCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT-EEEE
T ss_pred             CCcccCCcCCCCcccccccC-cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCC-eEEE
Confidence            00112333444556677887 899999999999999998875311  111  1     27888999999999999 5999


Q ss_pred             EccCCeEEEEEccCCC
Q 018293          324 GGSKGKLEIWDTLSDA  339 (358)
Q Consensus       324 ~~~dg~i~vw~~~~~~  339 (358)
                      |+.||+|+||++.+++
T Consensus       506 gs~DgtV~lwd~~~~~  521 (902)
T 2oaj_A          506 SIETGDVVLFKYEVNQ  521 (902)
T ss_dssp             EETTSCEEEEEEEECC
T ss_pred             EecCcEEEEEEecCcc
Confidence            9999999999998774

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.9e-35  Score=252.10  Aligned_cols=261  Identities=15%  Similarity=0.204  Sum_probs=205.5

Q ss_pred             CcccceeeecCCccccCC----CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCc
Q 018293           47 AFPLCMAWLDCPLKDREK----GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT  122 (358)
Q Consensus        47 ~~~~~~~~~~~~~~~s~~----~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  122 (358)
                      ..+.+++|       +|+    ...+++++.++.|++||+.+++.......                      .....|.
T Consensus        19 ~~v~~i~~-------~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~----------------------~~~~~~~   69 (366)
T 3k26_A           19 QPLFGVQF-------NWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS----------------------YVDADAD   69 (366)
T ss_dssp             SCEEEEEE-------CTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEE----------------------EECSCTT
T ss_pred             CceEEEEE-------ecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeee----------------------ccccCCC
Confidence            34456666       552    45566666678999999986654432211                      1122477


Q ss_pred             ccEEEEecCCCC---CcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcC-CCCcEEEEEeCCCcEEEEEcccC
Q 018293          123 DSVLGLAWNKEF---RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH-HSPQILLSGSFDRSVVMKDARIS  198 (358)
Q Consensus       123 ~~v~~~~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~  198 (358)
                      ..|++++|+|++   +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++ .++++++.||.|++||++++
T Consensus        70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~  148 (366)
T 3k26_A           70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTD  148 (366)
T ss_dssp             CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTT
T ss_pred             CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecC
Confidence            899999999984   35899999999999999999999999999999999999999 66 89999999999999999988


Q ss_pred             CCccce---eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC-------------------CCCCCccEEE
Q 018293          199 THSGFK---WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-------------------STSQQSSFTL  256 (358)
Q Consensus       199 ~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-------------------~~~~~~~~~~  256 (358)
                      +.....   ..+...|.+++|+|+ +.++++++.||.|++||+++.+....                   ..........
T Consensus       149 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          149 TLVAIFGGVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             EEEEEECSTTSCSSCEEEEEECTT-SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             eEEEEecccccccCceeEEEECCC-CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence            766544   468889999999995 56899999999999999987521000                   0000112233


Q ss_pred             eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc------------eeeEecCCCCceeEEEEEcCC--CCeEEE
Q 018293          257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP------------SCIASRNPKAGAVFSVAFSED--SPFVLA  322 (358)
Q Consensus       257 ~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------~~~~~~~~~~~~v~~~~~~~~--~~~~l~  322 (358)
                      ..|...|.+++|+  + .+|++++.|+.|++||+++.+.            ..+..+..|...|.+++|+|+  ++ +|+
T Consensus       228 ~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~  303 (366)
T 3k26_A          228 DIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLA  303 (366)
T ss_dssp             SSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEE
T ss_pred             cCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEE
Confidence            3489999999999  4 7999999999999999988653            346667788889999999999  88 589


Q ss_pred             EEccCCeEEEEEccCCCccc
Q 018293          323 IGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       323 ~~~~dg~i~vw~~~~~~~~~  342 (358)
                      +|+.||.|++||+.+++...
T Consensus       304 ~~~~dg~i~vwd~~~~~~~~  323 (366)
T 3k26_A          304 LGNQVGKLYVWDLEVEDPHK  323 (366)
T ss_dssp             EECTTSCEEEEECCSSSGGG
T ss_pred             EEecCCcEEEEECCCCCCcc
Confidence            99999999999999987654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.6e-35  Score=245.23  Aligned_cols=244  Identities=21%  Similarity=0.279  Sum_probs=187.1

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCC--CceEeeceeecCCcccceeeecCCccccC--CCceEEecCCCCe
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGD--PNLYVHHHIIIPAFPLCMAWLDCPLKDRE--KGNFMAVGSMEPA   76 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~g~~dg~   76 (358)
                      ++|+|+++.|++|..++     .+.+|+...+..  ...+..|    ...+.++.|       ++  ++++|++|+.|++
T Consensus        19 v~~s~~g~~lasgs~D~-----~v~lwd~~~~~~~~~~~l~gH----~~~V~~v~~-------~~~~~~~~l~s~s~D~~   82 (316)
T 3bg1_A           19 AQMDYYGTRLATCSSDR-----SVKIFDVRNGGQILIADLRGH----EGPVWQVAW-------AHPMYGNILASCSYDRK   82 (316)
T ss_dssp             EEECGGGCEEEEEETTT-----EEEEEEEETTEEEEEEEEECC----SSCEEEEEE-------CCGGGSSCEEEEETTSC
T ss_pred             eeEcCCCCEEEEEeCCC-----eEEEEEecCCCcEEEEEEcCC----CccEEEEEe-------CCCCCCCEEEEEECCCE
Confidence            47899999999998776     677777654311  1111222    334456666       44  4899999999999


Q ss_pred             EEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC-CcEEEEEEcCCeEEEEECCCC
Q 018293           77 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVAAG  155 (358)
Q Consensus        77 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~  155 (358)
                      |++||+.++..                         .....+.+|...|.+++|+|++ +.+|++|+.|++|++||++.+
T Consensus        83 v~iWd~~~~~~-------------------------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           83 VIIWREENGTW-------------------------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             EEEECCSSSCC-------------------------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             EEEEECCCCcc-------------------------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence            99999875321                         1122455799999999999973 568999999999999999876


Q ss_pred             c---eeeeecccccceeeEEEcCCC----------------CcEEEEEeCCCcEEEEEcccCC---CccceeeecCCeee
Q 018293          156 K---CNLTLEHHTDKVQAVAWNHHS----------------PQILLSGSFDRSVVMKDARIST---HSGFKWAVAADVES  213 (358)
Q Consensus       156 ~---~~~~~~~~~~~v~~~~~~~~~----------------~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~  213 (358)
                      .   ....+.+|...+.+++|+|+.                ..+|++++.|+.|++||++...   .......|...|.+
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~  217 (316)
T 3bg1_A          138 GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD  217 (316)
T ss_dssp             SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEE
T ss_pred             CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEE
Confidence            3   245667899999999999973                2689999999999999997542   23334568889999


Q ss_pred             EEEcCCC---CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEec
Q 018293          214 LAWDPHA---EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  290 (358)
Q Consensus       214 ~~~~~~~---~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~  290 (358)
                      ++|+|++   ..+|++++.||.|++||++.....     ......+..|...|.+++|+|++ .+|++++.|+.|++|+.
T Consensus       218 v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~-----~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          218 VAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN-----TWSPKLLHKFNDVVWHVSWSITA-NILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             EECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC-----CCBCCEEEECSSCEEEEEECTTT-CCEEEEESSSCEEEEEE
T ss_pred             EEecCCCCCCCceEEEEcCCCeEEEEEccCcccc-----chhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEE
Confidence            9999975   368999999999999999863110     01233456788999999999998 89999999999999997


Q ss_pred             C
Q 018293          291 S  291 (358)
Q Consensus       291 ~  291 (358)
                      .
T Consensus       292 ~  292 (316)
T 3bg1_A          292 S  292 (316)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.9e-34  Score=252.84  Aligned_cols=233  Identities=19%  Similarity=0.316  Sum_probs=199.4

Q ss_pred             CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293           63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  142 (358)
Q Consensus        63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  142 (358)
                      +++++|++|+.||.|++||+.+++.                           ...+.+|.+.|.+++|+|+ + ++++|+
T Consensus       130 ~~~~~l~sgs~dg~i~vwd~~~~~~---------------------------~~~~~~h~~~V~~l~~~~~-~-~l~s~s  180 (464)
T 3v7d_B          130 FEDNYVITGADDKMIRVYDSINKKF---------------------------LLQLSGHDGGVWALKYAHG-G-ILVSGS  180 (464)
T ss_dssp             EETTEEEEEETTSCEEEEETTTTEE---------------------------EEEECCCSSCEEEEEECST-T-EEEEEE
T ss_pred             ECCCEEEEEcCCCcEEEEECCCCcE---------------------------EEEEeCCCcCEEEEEEcCC-C-EEEEEe
Confidence            4678999999999999999975432                           2345689999999999998 4 899999


Q ss_pred             cCCeEEEEECCCCceeeeecccccceeeEEEcC--CCCcEEEEEeCCCcEEEEEcccCCCcc------------------
Q 018293          143 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSG------------------  202 (358)
Q Consensus       143 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~------------------  202 (358)
                      .||+|++||+++++++..+.+|...|.+++|++  ++ .++++++.||.|++||+++.....                  
T Consensus       181 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (464)
T 3v7d_B          181 TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN  259 (464)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred             CCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence            999999999999999999999999999999984  55 889999999999999998765332                  


Q ss_pred             -----ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEE
Q 018293          203 -----FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA  277 (358)
Q Consensus       203 -----~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~  277 (358)
                           ....+...+.++.  + ++.++++++.||.|++||+++.         ..+..+.+|...|.+++|+|++ .+++
T Consensus       260 ~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~l~  326 (464)
T 3v7d_B          260 PYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQM---------KCLYILSGHTDRIYSTIYDHER-KRCI  326 (464)
T ss_dssp             TTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEEETTT-TEEE
T ss_pred             eEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCC---------cEEEEecCCCCCEEEEEEcCCC-CEEE
Confidence                 1234555666664  4 3458999999999999999987         7788889999999999999998 8999


Q ss_pred             EEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          278 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       278 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      +|+.||.|++||+++++  .+..+.+|...|.+++|++  . .+++++.||.|++||+.+++....
T Consensus       327 sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~v~vwd~~~~~~~~~  387 (464)
T 3v7d_B          327 SASMDTTIRIWDLENGE--LMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDYSRKFS  387 (464)
T ss_dssp             EEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEeCCCcEEEEECCCCc--EEEEEeCCCCcEEEEEEcC--C-EEEEEeCCCcEEEEECCCCceeee
Confidence            99999999999999887  5777889999999999984  4 589999999999999998765443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-34  Score=248.96  Aligned_cols=239  Identities=11%  Similarity=0.077  Sum_probs=188.7

Q ss_pred             ccccCCCceE-EecCCCCeEEEEEcc--cccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCC
Q 018293           59 LKDREKGNFM-AVGSMEPAIEIWDLD--VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  135 (358)
Q Consensus        59 ~~~s~~~~~l-~~g~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  135 (358)
                      ++|+|++++| ++|+.||.|+|||+.  +++......                         ...|...|++++|+|+ +
T Consensus       108 ~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-------------------------~~~~~~~v~~~~~sp~-~  161 (450)
T 2vdu_B          108 LRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-------------------------RFCFSKRPNAISIAED-D  161 (450)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-------------------------EEECSSCEEEEEECTT-S
T ss_pred             EEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-------------------------cccCCCCceEEEEcCC-C
Confidence            4459999996 899999999999997  443332111                         1246789999999999 6


Q ss_pred             cEEEEEEcCCeEEEEECCCCceee----eecccccceeeEEEcCC---CCcEEEEEeCCCcEEEEEcccCCCccc-eeee
Q 018293          136 NILASASADKQVKIWDVAAGKCNL----TLEHHTDKVQAVAWNHH---SPQILLSGSFDRSVVMKDARISTHSGF-KWAV  207 (358)
Q Consensus       136 ~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~  207 (358)
                      .+|++|+.||.|++|++.+++...    .+.+|...|.+++|+|+   + .+|++++.|+.|++||+++++.... ...|
T Consensus       162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h  240 (450)
T 2vdu_B          162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIVDKWLFGH  240 (450)
T ss_dssp             SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred             CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence            799999999999999998877554    77889999999999999   7 8999999999999999998876654 4468


Q ss_pred             cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe-------------------------ecCCc
Q 018293          208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-------------------------AHDKA  262 (358)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~  262 (358)
                      ...|.+++|+ + +.++++++.|+.|++||++++         +.+..+.                         .....
T Consensus       241 ~~~v~~~~~s-d-~~~l~s~~~d~~v~vwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (450)
T 2vdu_B          241 KHFVSSICCG-K-DYLLLSAGGDDKIFAWDWKTG---------KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA  309 (450)
T ss_dssp             SSCEEEEEEC-S-TTEEEEEESSSEEEEEETTTC---------CEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred             CCceEEEEEC-C-CCEEEEEeCCCeEEEEECCCC---------cEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence            8999999999 4 569999999999999999987         4444443                         22456


Q ss_pred             eeEEEecCCCCcEEEEEe-CCCcEEEEec--CCC-CceeeEecCCCCceeEEEEEcCCCCeEEEEEcc------CCeEEE
Q 018293          263 VCTISYNPLVPNLLATGS-TDKMVKLWDL--SNN-QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS------KGKLEI  332 (358)
Q Consensus       263 i~~i~~~~~~~~~l~~~~-~dg~i~i~d~--~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~v  332 (358)
                      +.+++|+|++ .+|++++ .|+.|++|++  ..+ ....+..+..| ..|.+++|+|++. ++++++.      +..|.+
T Consensus       310 v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~-~v~~~~~~~~~~~~~~i~v  386 (450)
T 2vdu_B          310 VSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEF-QVTLDNKESSGVQKNFAKF  386 (450)
T ss_dssp             EEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEE-EEEECCTTCCSSCCCSEEE
T ss_pred             EEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcE-EEEEecccCCCCCCcceEE
Confidence            8999999988 7888888 8999999999  443 22345556666 7899999999643 3443332      456888


Q ss_pred             EEccCC
Q 018293          333 WDTLSD  338 (358)
Q Consensus       333 w~~~~~  338 (358)
                      |.+...
T Consensus       387 ~~~~~~  392 (450)
T 2vdu_B          387 IEYNLN  392 (450)
T ss_dssp             EEEETT
T ss_pred             EEEEcC
Confidence            887643

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.9e-34  Score=247.13  Aligned_cols=234  Identities=23%  Similarity=0.386  Sum_probs=197.5

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      +++.+++++.||.|++||+.+++....                          ....|...|.+++|+|+ +.+|++|+.
T Consensus       102 s~~~l~~~~~d~~v~lw~~~~~~~~~~--------------------------~~~~~~~~v~~v~~s~~-~~~l~~~~~  154 (401)
T 4aez_A          102 SNLNVVAVALERNVYVWNADSGSVSAL--------------------------AETDESTYVASVKWSHD-GSFLSVGLG  154 (401)
T ss_dssp             CTTSEEEEEETTEEEEEETTTCCEEEE--------------------------EECCTTCCEEEEEECTT-SSEEEEEET
T ss_pred             cCCCEEEEECCCeEEEeeCCCCcEeEe--------------------------eecCCCCCEEEEEECCC-CCEEEEECC
Confidence            456688888999999999986543321                          11238899999999998 679999999


Q ss_pred             CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC-CCccceeeecCCeeeEEEcCCCCC
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGFKWAVAADVESLAWDPHAEH  222 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~  222 (358)
                      ||.|++||+.+++.+..+.+|...|.+++|+  + .++++++.||.|++||++.. ........+...|.+++|+|+ +.
T Consensus       155 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~  230 (401)
T 4aez_A          155 NGLVDIYDVESQTKLRTMAGHQARVGCLSWN--R-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD-GL  230 (401)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT-SS
T ss_pred             CCeEEEEECcCCeEEEEecCCCCceEEEEEC--C-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCC-CC
Confidence            9999999999999999999999999999994  3 68999999999999999954 444455678899999999994 56


Q ss_pred             eEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe--CCCcEEEEecCCCCceeeEe
Q 018293          223 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS--TDKMVKLWDLSNNQPSCIAS  300 (358)
Q Consensus       223 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~  300 (358)
                      ++++++.||.|++||+++.         .....+..|...|.+++|+|++..++++++  .|+.|++||+++++.  ...
T Consensus       231 ~l~s~~~d~~v~iwd~~~~---------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~--~~~  299 (401)
T 4aez_A          231 QLASGGNDNVVQIWDARSS---------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR--VNT  299 (401)
T ss_dssp             EEEEEETTSCEEEEETTCS---------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE--EEE
T ss_pred             EEEEEeCCCeEEEccCCCC---------CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE--EEE
Confidence            9999999999999999986         777888899999999999998878888876  799999999999874  333


Q ss_pred             cCCCCceeEEEEEcCCCCeEEEE--EccCCeEEEEEccCCCcc
Q 018293          301 RNPKAGAVFSVAFSEDSPFVLAI--GGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       301 ~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~vw~~~~~~~~  341 (358)
                      +. +...|.+++|+|++++ +++  |+.||.|++||+.+++..
T Consensus       300 ~~-~~~~v~~~~~s~~~~~-l~~~~g~~dg~i~v~~~~~~~~~  340 (401)
T 4aez_A          300 VD-AGSQVTSLIWSPHSKE-IMSTHGFPDNNLSIWSYSSSGLT  340 (401)
T ss_dssp             EE-CSSCEEEEEECSSSSE-EEEEECTTTCEEEEEEEETTEEE
T ss_pred             Ee-CCCcEEEEEECCCCCe-EEEEeecCCCcEEEEecCCccce
Confidence            33 5578999999999996 555  458999999999886544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9.1e-34  Score=245.28  Aligned_cols=290  Identities=15%  Similarity=0.248  Sum_probs=196.0

Q ss_pred             CcccC-CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeece---------eecCCcccceeeecCCccccC-CCceEE
Q 018293            1 MTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH---------IIIPAFPLCMAWLDCPLKDRE-KGNFMA   69 (358)
Q Consensus         1 l~~~p-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~s~-~~~~l~   69 (358)
                      ++|+| +++.|+++..++     .+.+|+.........+....         ......+.++.|       +| ++++|+
T Consensus        49 ~~~s~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~l~  116 (408)
T 4a11_B           49 LDIEPVEGRYMLSGGSDG-----VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQW-------YPHDTGMFT  116 (408)
T ss_dssp             EEECTTTCCEEEEEETTS-----CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEE-------CTTCTTCEE
T ss_pred             EEEecCCCCEEEEEcCCC-----eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEE-------ccCCCcEEE
Confidence            47899 999999998776     67777776654333332111         012334446655       77 788999


Q ss_pred             ecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC--CcEEEEEEcCCeE
Q 018293           70 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF--RNILASASADKQV  147 (358)
Q Consensus        70 ~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~v  147 (358)
                      +++.||.|++||+.+++....                           + .+...+.++.|+|.+  +.++++++.||.|
T Consensus       117 s~~~d~~i~iwd~~~~~~~~~---------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  168 (408)
T 4a11_B          117 SSSFDKTLKVWDTNTLQTADV---------------------------F-NFEETVYSHHMSPVSTKHCLVAVGTRGPKV  168 (408)
T ss_dssp             EEETTSEEEEEETTTTEEEEE---------------------------E-ECSSCEEEEEECSSCSSCCEEEEEESSSSE
T ss_pred             EEeCCCeEEEeeCCCCcccee---------------------------c-cCCCceeeeEeecCCCCCcEEEEEcCCCeE
Confidence            999999999999976443221                           1 266788999998852  3499999999999


Q ss_pred             EEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc----------------eeeecCCe
Q 018293          148 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF----------------KWAVAADV  211 (358)
Q Consensus       148 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------~~~~~~~i  211 (358)
                      ++||+++++.+..+..|...|.+++|+|++..++++++.||.|++||++.......                ...+...|
T Consensus       169 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  248 (408)
T 4a11_B          169 QLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV  248 (408)
T ss_dssp             EEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred             EEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence            99999999999999999999999999999955799999999999999987652211                13577889


Q ss_pred             eeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCC--------------------------------------CCCCcc
Q 018293          212 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS--------------------------------------TSQQSS  253 (358)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~--------------------------------------~~~~~~  253 (358)
                      .+++|+|+ +.++++++.||.|++||+++.......                                      .....+
T Consensus       249 ~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~  327 (408)
T 4a11_B          249 NGLCFTSD-GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI  327 (408)
T ss_dssp             EEEEECTT-SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE
T ss_pred             eEEEEcCC-CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce
Confidence            99999995 568999999999999999876532110                                      122456


Q ss_pred             EEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEE
Q 018293          254 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW  333 (358)
Q Consensus       254 ~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw  333 (358)
                      ..+.+|...|++++|+|++ .+|++++.||.|++||+++.++..  .....   -....+.+.....+.+.+.++.+++|
T Consensus       328 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~W  401 (408)
T 4a11_B          328 TMLKGHYKTVDCCVFQSNF-QELYSGSRDCNILAWVPSLYEPVP--DDDET---TTKSQLNPAFEDAWSSSDEEGGTSAW  401 (408)
T ss_dssp             EEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEEECC-----------------------------------------
T ss_pred             eeeccCCCeEEEEEEcCCC-CEEEEECCCCeEEEEeCCCCCccC--CCCce---EeccccccccceeecccCccCceeec
Confidence            6678899999999999998 899999999999999999887432  22211   12233444443357778889999999


Q ss_pred             EccC
Q 018293          334 DTLS  337 (358)
Q Consensus       334 ~~~~  337 (358)
                      +...
T Consensus       402 ~~~~  405 (408)
T 4a11_B          402 SHPQ  405 (408)
T ss_dssp             ----
T ss_pred             CCcc
Confidence            8753

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.1e-35  Score=287.08  Aligned_cols=281  Identities=16%  Similarity=0.193  Sum_probs=229.0

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      +++|+++.+++|..++     .+++|+...+........|    ...+.++.|       +|+|++|++++.||.|++||
T Consensus       968 ~~sp~g~~l~~g~~~g-----~i~i~d~~~~~~~~~~~~h----~~~v~~l~~-------s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A          968 CLSPHLEYVAFGDEDG-----AIKIIELPNNRVFSSGVGH----KKAVRHIQF-------TADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp             EECTTSSEEEEEETTS-----CCEEEETTTTSCEEECCCC----SSCCCCEEE-------CSSSSCEEEECSSSBEEEEE
T ss_pred             EEcCCCCEEEEEcCCC-----CEEEEEcCCCceeeecccC----CCceEEEEE-------CCCCCEEEEEcCCCEEEEEE
Confidence            6899999999998877     7788888765332222223    223345544       89999999999999999999


Q ss_pred             cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee
Q 018293           82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL  161 (358)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  161 (358)
                      +.+++..                            ...+|...|.+++|+|+ + .+++++.||.|++||+.+++....+
T Consensus      1032 ~~~~~~~----------------------------~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~v~vwd~~~~~~~~~~ 1081 (1249)
T 3sfz_A         1032 WQTGDYV----------------------------FLQAHQETVKDFRLLQD-S-RLLSWSFDGTVKVWNVITGRIERDF 1081 (1249)
T ss_dssp             TTTTEEE----------------------------CCBCCSSCEEEEEECSS-S-EEEEEESSSEEEEEETTTTCCCEEE
T ss_pred             CCCCceE----------------------------EEecCCCcEEEEEEcCC-C-cEEEEECCCcEEEEECCCCceeEEE
Confidence            9764332                            23368999999999997 4 6889999999999999999999999


Q ss_pred             cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293          162 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  241 (358)
Q Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~  241 (358)
                      .+|...|.+++|+|++ .++++++.||.|++||+.+++.......|...|++++|+|+ +.++++++.||.|++||+.++
T Consensus      1082 ~~~~~~v~~~~~s~d~-~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~d-g~~lat~~~dg~i~vwd~~~~ 1159 (1249)
T 3sfz_A         1082 TCHQGTVLSCAISSDA-TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD-GILLATGDDNGEIRIWNVSDG 1159 (1249)
T ss_dssp             ECCSSCCCCEEECSSS-SSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSS-SSEEEEEETTSCCCEEESSSS
T ss_pred             cccCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCC-CCEEEEEeCCCEEEEEECCCC
Confidence            9999999999999999 88999999999999999998888777789999999999995 559999999999999999987


Q ss_pred             CCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEE
Q 018293          242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVL  321 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  321 (358)
                      +................|...|++++|+|++ .+|++++  |.|++||+.+++  .+..+..|...|.+++|+|++++ +
T Consensus      1160 ~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg-~~l~s~~--g~v~vwd~~~g~--~~~~~~~~~~~i~~~~~s~dg~~-l 1233 (1249)
T 3sfz_A         1160 QLLHSCAPISVEEGTATHGGWVTDVCFSPDS-KTLVSAG--GYLKWWNVATGD--SSQTFYTNGTNLKKIHVSPDFRT-Y 1233 (1249)
T ss_dssp             CCCCCCCCCC-------CCSCCCEEEECTTS-SCEEEES--SSEEEBCSSSCB--CCCCCCCSSCCCCCCEECSSSCC-E
T ss_pred             ceEEEeccccccccccccCceEEEEEECCCC-CEEEECC--CeEEEEECCCCc--eeeeeeccCCcccEEEECCCCCE-E
Confidence            5433221112223346788999999999998 7888775  899999999987  45567778889999999999995 8


Q ss_pred             EEEccCCeEEEEEcc
Q 018293          322 AIGGSKGKLEIWDTL  336 (358)
Q Consensus       322 ~~~~~dg~i~vw~~~  336 (358)
                      ++++.||.|++|++.
T Consensus      1234 ~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A         1234 VTVDNLGILYILQVL 1248 (1249)
T ss_dssp             EEECTTCCEEEECCC
T ss_pred             EEecCCcEEEEEeec
Confidence            889999999999974

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=4.7e-34  Score=243.61  Aligned_cols=281  Identities=16%  Similarity=0.272  Sum_probs=212.4

Q ss_pred             CcccCC---CcEEEEEEecCCCceEEEEEEeccCCCC-C-ceEeeceeecCCcccceeeecCCccccCCCceEEecCCCC
Q 018293            1 MTINPN---DAVIVCARNEDDVSHLEVYILEESDGGD-P-NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP   75 (358)
Q Consensus         1 l~~~p~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg   75 (358)
                      ++|+|+   ++.|+++..++     .+.+|+...... . ..+..|    ...+.++.|       +|++++|++|+.||
T Consensus        45 ~~~~~~~~~g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~-------~~~~~~l~s~~~dg  108 (368)
T 3mmy_A           45 LSFSPPTLPGNFLIAGSWAN-----DVRCWEVQDSGQTIPKAQQMH----TGPVLDVCW-------SDDGSKVFTASCDK  108 (368)
T ss_dssp             EEECCTTSSSEEEEEEETTS-----EEEEEEECTTSCEEEEEEEEC----SSCEEEEEE-------CTTSSEEEEEETTS
T ss_pred             EEEcCCCCCceEEEEECCCC-----cEEEEEcCCCCceeEEEeccc----cCCEEEEEE-------CcCCCEEEEEcCCC
Confidence            468999   59999997776     677777765211 1 122222    334446655       89999999999999


Q ss_pred             eEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec--CCCCCcEEEEEEcCCeEEEEECC
Q 018293           76 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW--NKEFRNILASASADKQVKIWDVA  153 (358)
Q Consensus        76 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~l~s~~~dg~v~iwd~~  153 (358)
                      .|++||+.+.+...                            +.+|...|.+++|  +|+ +.+|++++.||.|++||++
T Consensus       109 ~v~iwd~~~~~~~~----------------------------~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~  159 (368)
T 3mmy_A          109 TAKMWDLSSNQAIQ----------------------------IAQHDAPVKTIHWIKAPN-YSCVMTGSWDKTLKFWDTR  159 (368)
T ss_dssp             EEEEEETTTTEEEE----------------------------EEECSSCEEEEEEEECSS-CEEEEEEETTSEEEEECSS
T ss_pred             cEEEEEcCCCCcee----------------------------eccccCceEEEEEEeCCC-CCEEEEccCCCcEEEEECC
Confidence            99999997543221                            2359999999999  888 6799999999999999999


Q ss_pred             CCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce--eeecCCeeeEEEcCCCC---CeEEEEe
Q 018293          154 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADVESLAWDPHAE---HSFVVSL  228 (358)
Q Consensus       154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~---~~~~~~~  228 (358)
                      +++++..+..+. .+.++.+.+   ..+++++.++.+.+|+++........  ........++.+.++..   ..+++++
T Consensus       160 ~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (368)
T 3mmy_A          160 SSNPMMVLQLPE-RCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS  235 (368)
T ss_dssp             CSSCSEEEECSS-CEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCcEEEEEecCC-CceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec
Confidence            999988888654 566777765   46888999999999999876433211  12334455666554322   2399999


Q ss_pred             cCCeEEEEEcccCCCCCCCCCCCccEEEeecCC------------ceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce
Q 018293          229 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK------------AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  296 (358)
Q Consensus       229 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  296 (358)
                      .||.|++||++....      ......+..|..            .|++++|+|++ .+|++++.||.|++||+++++  
T Consensus       236 ~dg~i~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~--  306 (368)
T 3mmy_A          236 IEGRVAIHYINPPNP------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDART--  306 (368)
T ss_dssp             TTSEEEEEESSCSCH------HHHSEEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE--
T ss_pred             CCCcEEEEecCCCCc------cccceeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCCCc--
Confidence            999999999987521      134556666655            79999999998 899999999999999999887  


Q ss_pred             eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      .+..+..|..+|.+++|+|++++ |++++.|+..+.|++.+.+.
T Consensus       307 ~~~~~~~~~~~v~~~~~s~~g~~-l~~~s~d~~~~~~~~~~~~~  349 (368)
T 3mmy_A          307 KLKTSEQLDQPISACCFNHNGNI-FAYASSYDWSKGHEFYNPQK  349 (368)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSC-EEEEECCCSTTCGGGCCTTS
T ss_pred             EEEEecCCCCCceEEEECCCCCe-EEEEecccccccccccCCCc
Confidence            56778899999999999999995 88888888666666544433

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.1e-34  Score=260.52  Aligned_cols=246  Identities=15%  Similarity=0.195  Sum_probs=208.1

Q ss_pred             ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCccc-EEEEecCC--CCC
Q 018293           59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS-VLGLAWNK--EFR  135 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~--~~~  135 (358)
                      ++|+|++++|++++ ++.|++||+.++...                       ......+.+|... |++++|+|  + +
T Consensus        24 ~~~spdg~~l~~~~-~~~v~v~~~~~~~~~-----------------------~~~~~~~~~h~~~~v~~~~~sp~~~-~   78 (615)
T 1pgu_A           24 LSYDPTTNAIAYPC-GKSAFVRCLDDGDSK-----------------------VPPVVQFTGHGSSVVTTVKFSPIKG-S   78 (615)
T ss_dssp             CEEETTTTEEEEEE-TTEEEEEECCSSCCS-----------------------SCSEEEECTTTTSCEEEEEECSSTT-C
T ss_pred             EEECCCCCEEEEec-CCeEEEEECCCCCCc-----------------------cccceEEecCCCceEEEEEECcCCC-C
Confidence            34499999999998 889999999754110                       0223356689999 99999999  8 6


Q ss_pred             cEEEEEEcCCeEEEEECCCC--------ceeeeecccccceeeEEEcCCCCcEEEEEeCC----CcEEEEEcccCCCccc
Q 018293          136 NILASASADKQVKIWDVAAG--------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD----RSVVMKDARISTHSGF  203 (358)
Q Consensus       136 ~~l~s~~~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~  203 (358)
                      .+|++|+.||.|++||+.++        +....+..|...|.+++|+|++ .++++++.+    +.|.+||  .++....
T Consensus        79 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~v~~~d--~~~~~~~  155 (615)
T 1pgu_A           79 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWD--SGNSLGE  155 (615)
T ss_dssp             CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETT--TCCEEEE
T ss_pred             CEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC-CEEEEeccCCCCccEEEEEE--CCCccee
Confidence            79999999999999999754        6777888899999999999999 888898887    7888888  3444444


Q ss_pred             eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCC---ceeEEEecCC-CCcEEEEE
Q 018293          204 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK---AVCTISYNPL-VPNLLATG  279 (358)
Q Consensus       204 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~i~~i~~~~~-~~~~l~~~  279 (358)
                      ...+...|.+++|+|++..++++++.|+.|++||+.+.         +....+..|..   .|.+++|+|+ + .+|+++
T Consensus       156 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~  225 (615)
T 1pgu_A          156 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF---------KFSASDRTHHKQGSFVRDVEFSPDSG-EFVITV  225 (615)
T ss_dssp             CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB---------EEEEEECSSSCTTCCEEEEEECSTTC-CEEEEE
T ss_pred             eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc---------ceeeeecccCCCCceEEEEEECCCCC-CEEEEE
Confidence            56788899999999977668999999999999999876         77788888998   9999999999 7 899999


Q ss_pred             eCCCcEEEEecCCCCceeeEec-C---CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293          280 STDKMVKLWDLSNNQPSCIASR-N---PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       280 ~~dg~i~i~d~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                      +.||.|++||+++++  .+..+ .   .|...|.+++|+ +++ .+++++.||.|++||+.+++.+.....
T Consensus       226 ~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~  292 (615)
T 1pgu_A          226 GSDRKISCFDGKSGE--FLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWTL  292 (615)
T ss_dssp             ETTCCEEEEETTTCC--EEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             eCCCeEEEEECCCCC--EeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence            999999999999887  45555 4   789999999999 888 588999999999999998887655433

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-34  Score=239.17  Aligned_cols=235  Identities=16%  Similarity=0.160  Sum_probs=197.7

Q ss_pred             CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293           63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  142 (358)
Q Consensus        63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  142 (358)
                      +++++|++|+.||.|++||+.+....                           ..+..|...|.+++|+|+ +.+|++++
T Consensus        27 ~~~~~l~s~~~dg~v~vw~~~~~~~~---------------------------~~~~~~~~~v~~~~~~~~-~~~l~~~~   78 (313)
T 3odt_A           27 VDDSKVASVSRDGTVRLWSKDDQWLG---------------------------TVVYTGQGFLNSVCYDSE-KELLLFGG   78 (313)
T ss_dssp             EETTEEEEEETTSEEEEEEESSSEEE---------------------------EEEEECSSCEEEEEEETT-TTEEEEEE
T ss_pred             cCCCEEEEEEcCCcEEEEECCCCEEE---------------------------EEeecCCccEEEEEECCC-CCEEEEec
Confidence            68999999999999999999653322                           234468999999999999 67999999


Q ss_pred             cCCeEEEEECCCC---ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293          143 ADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  219 (358)
Q Consensus       143 ~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  219 (358)
                      .||.|++|++...   +.+..+..|...|.++.|  ++ .++++++.||.|++||  ..+.......+...+.++.|.|.
T Consensus        79 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~-~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~  153 (313)
T 3odt_A           79 KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QD-GVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF  153 (313)
T ss_dssp             TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET
T ss_pred             CCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cC-CEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC
Confidence            9999999998754   567778889999999999  34 6899999999999999  44444445668889999999986


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee-cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceee
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  298 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  298 (358)
                      ++..+++++.||.|++||..           .....+.. |...+.+++|+|++ . +++++.||.|++||+++++  .+
T Consensus       154 ~~~~l~~~~~d~~i~i~d~~-----------~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~--~~  218 (313)
T 3odt_A          154 SENKFLTASADKTIKLWQND-----------KVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGD--VL  218 (313)
T ss_dssp             TTTEEEEEETTSCEEEEETT-----------EEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCC--EE
T ss_pred             CCCEEEEEECCCCEEEEecC-----------ceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchh--hh
Confidence            67799999999999999943           45556666 88999999999987 5 8999999999999999887  56


Q ss_pred             EecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293          299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                      ..+..|...|.+++|+|++.  +++++.||.|++||+.+++.+.....+
T Consensus       219 ~~~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~  265 (313)
T 3odt_A          219 RTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENGSLKQVITLP  265 (313)
T ss_dssp             EEEECCSSCEEEEEECTTSC--EEEEETTSEEEEECTTTCCEEEEEECS
T ss_pred             hhhhcCCceEEEEEEecCCC--EEEEecCCEEEEEECCCCceeEEEecc
Confidence            66778999999999999994  778999999999999998877655443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.7e-34  Score=249.11  Aligned_cols=266  Identities=24%  Similarity=0.358  Sum_probs=215.6

Q ss_pred             CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccc
Q 018293            6 NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI   85 (358)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~   85 (358)
                      +++.++++..++     .+.+|+...+.....+..|    ...+.++.|         +++++++|+.||.|++||+.++
T Consensus       168 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~h----~~~v~~~~~---------~~~~l~s~s~dg~i~~wd~~~~  229 (445)
T 2ovr_B          168 RDNIIISGSTDR-----TLKVWNAETGECIHTLYGH----TSTVRCMHL---------HEKRVVSGSRDATLRVWDIETG  229 (445)
T ss_dssp             ETTEEEEEETTS-----CEEEEETTTTEEEEEECCC----SSCEEEEEE---------ETTEEEEEETTSEEEEEESSSC
T ss_pred             cCCEEEEEeCCC-----eEEEEECCcCcEEEEECCC----CCcEEEEEe---------cCCEEEEEeCCCEEEEEECCCC
Confidence            367888887776     7888887765222222222    233345544         4678999999999999999754


Q ss_pred             cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccc
Q 018293           86 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT  165 (358)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  165 (358)
                      +..                           ..+.+|...|.+++|  + +.++++|+.||.|++||+++++++..+.+|.
T Consensus       230 ~~~---------------------------~~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  279 (445)
T 2ovr_B          230 QCL---------------------------HVLMGHVAAVRCVQY--D-GRRVVSGAYDFMVKVWDPETETCLHTLQGHT  279 (445)
T ss_dssp             CEE---------------------------EEEECCSSCEEEEEE--C-SSCEEEEETTSCEEEEEGGGTEEEEEECCCS
T ss_pred             cEE---------------------------EEEcCCcccEEEEEE--C-CCEEEEEcCCCEEEEEECCCCcEeEEecCCC
Confidence            332                           244579999999999  3 5589999999999999999999999999999


Q ss_pred             cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCC
Q 018293          166 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP  245 (358)
Q Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~  245 (358)
                      ..|.++.|  ++ ..+++++.||.|++||+++++.......+...+.++.+++   +++++++.||.|++||++++    
T Consensus       280 ~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~vwd~~~~----  349 (445)
T 2ovr_B          280 NRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTG----  349 (445)
T ss_dssp             SCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTC----
T ss_pred             CceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC---CEEEEEeCCCeEEEEECCCC----
Confidence            99999999  55 7899999999999999999887776667888888888854   48999999999999999887    


Q ss_pred             CCCCCCccEEEee---cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe---cCCCCceeEEEEEcCCCCe
Q 018293          246 DSTSQQSSFTLHA---HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS---RNPKAGAVFSVAFSEDSPF  319 (358)
Q Consensus       246 ~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~  319 (358)
                           ..+..+..   |...|.+++|++   .+|++|+.||.|++||+.+++......   ...|.+.|.+++|+|++. 
T Consensus       350 -----~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-  420 (445)
T 2ovr_B          350 -----QCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL-  420 (445)
T ss_dssp             -----CEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE-
T ss_pred             -----cEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEE-
Confidence                 66777765   888999999974   799999999999999999988433321   146788999999999998 


Q ss_pred             EEEEEccCCe----EEEEEccCC
Q 018293          320 VLAIGGSKGK----LEIWDTLSD  338 (358)
Q Consensus       320 ~l~~~~~dg~----i~vw~~~~~  338 (358)
                      ++++|+.||.    |.+||+...
T Consensus       421 ~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          421 VCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEEEcccCCCCccEEEEEECCCC
Confidence            5899999997    999999754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.5e-33  Score=246.16  Aligned_cols=225  Identities=27%  Similarity=0.482  Sum_probs=197.2

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      ++++++|++|+.||.|++||+.+++.                           ...+.+|...|.+++|  + +.+|++|
T Consensus       140 ~~d~~~l~~g~~dg~i~iwd~~~~~~---------------------------~~~~~~h~~~v~~l~~--~-~~~l~sg  189 (435)
T 1p22_A          140 QYDDQKIVSGLRDNTIKIWDKNTLEC---------------------------KRILTGHTGSVLCLQY--D-ERVIITG  189 (435)
T ss_dssp             ECCSSEEEEEESSSCEEEEESSSCCE---------------------------EEEECCCSSCEEEEEC--C-SSEEEEE
T ss_pred             EECCCEEEEEeCCCeEEEEeCCCCeE---------------------------EEEEcCCCCcEEEEEE--C-CCEEEEE
Confidence            45899999999999999999975433                           2345679999999999  4 5699999


Q ss_pred             EcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc---cceeeecCCeeeEEEcC
Q 018293          142 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---GFKWAVAADVESLAWDP  218 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~  218 (358)
                      +.||.|++||+.+++.+..+.+|...|.+++|++   ..+++++.||.|++||+++....   .....+...|.+++|. 
T Consensus       190 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-  265 (435)
T 1p22_A          190 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-  265 (435)
T ss_dssp             ETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE-
T ss_pred             cCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC-
Confidence            9999999999999999999999999999999974   58999999999999999987765   3445678899999993 


Q ss_pred             CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceee
Q 018293          219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  298 (358)
Q Consensus       219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  298 (358)
                        +.++++|+.||.|++||++++         ..+..+..|...|.++.++  + .++++|+.||.|++||+++++  .+
T Consensus       266 --~~~l~s~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~--~~  329 (435)
T 1p22_A          266 --DKYIVSASGDRTIKVWNTSTC---------EFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA--CL  329 (435)
T ss_dssp             --TTEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCC--EE
T ss_pred             --CCEEEEEeCCCeEEEEECCcC---------cEEEEEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCC--EE
Confidence              458999999999999999987         7788899999999999995  3 799999999999999999987  56


Q ss_pred             EecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      ..+.+|...|.+++|  ++. .+++|+.||.|++||+.+++
T Consensus       330 ~~~~~h~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          330 RVLEGHEELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             EEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHT
T ss_pred             EEEeCCcCcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCC
Confidence            778889999999999  566 58999999999999998765

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.1e-33  Score=244.63  Aligned_cols=257  Identities=21%  Similarity=0.361  Sum_probs=197.6

Q ss_pred             CcccCC-CcEEEEEEecCCCceEEEEEEeccC----------CCCCceEeeceeecCCcccceeeecCCccccCCCc-eE
Q 018293            1 MTINPN-DAVIVCARNEDDVSHLEVYILEESD----------GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FM   68 (358)
Q Consensus         1 l~~~p~-~~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l   68 (358)
                      ++++|+ +++|+++..++     .|++|+...          ......+..|    ...+.++.|       +|++. +|
T Consensus       134 l~~~p~~~~~lat~~~dg-----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~-------~~~~~~~l  197 (430)
T 2xyi_A          134 ARYMPQNACVIATKTPSS-----DVLVFDYTKHPSKPEPSGECQPDLRLRGH----QKEGYGLSW-------NPNLNGYL  197 (430)
T ss_dssp             EEEETTEEEEEEEECSSS-----CEEEEEGGGSCSSCCTTCCCCCSEEEECC----SSCCCCEEE-------CTTSTTEE
T ss_pred             EEECCCCCcEEEEECCCC-----cEEEEECCCcccccCccccCCCcEEecCC----CCCeEEEEe-------CCCCCCeE
Confidence            468897 56777776665     677777654          1111222222    233446666       78888 99


Q ss_pred             EecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEE
Q 018293           69 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVK  148 (358)
Q Consensus        69 ~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~  148 (358)
                      ++|+.||.|++|++.+.....                    ........+.+|...|.+++|+|+++.+|++++.||.|+
T Consensus       198 ~s~~~dg~i~vwd~~~~~~~~--------------------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~  257 (430)
T 2xyi_A          198 LSASDDHTICLWDINATPKEH--------------------RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM  257 (430)
T ss_dssp             EEECTTSCEEEEETTSCCBGG--------------------GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             EEEeCCCeEEEEeCCCCCCCC--------------------ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEE
Confidence            999999999999997532211                    111223345679999999999996688999999999999


Q ss_pred             EEECCCC---ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC-CccceeeecCCeeeEEEcCCCCCeE
Q 018293          149 IWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDPHAEHSF  224 (358)
Q Consensus       149 iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~  224 (358)
                      +||++++   +.+..+..|...|++++|+|++..++++++.||.|++||++... .......|...|.+++|+|++..++
T Consensus       258 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l  337 (430)
T 2xyi_A          258 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL  337 (430)
T ss_dssp             EEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred             EEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEE
Confidence            9999987   56777888999999999999996689999999999999999844 4454556889999999999887889


Q ss_pred             EEEecCCeEEEEEcccCCCCCC-----CCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293          225 VVSLEDGTIKGFDIRTAKSDPD-----STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  293 (358)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~  293 (358)
                      ++++.||.|++||+........     ......+....+|...|++++|+|+++.+|++++.||.|++|++...
T Consensus       338 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          338 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            9999999999999987421110     00014566777889999999999998449999999999999998753

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=239.12  Aligned_cols=235  Identities=6%  Similarity=0.024  Sum_probs=181.3

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      .+.+++++|++|+.||.|++||+.+++.....                             ....|.++.|+|.    ++
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~-----------------------------~~~~v~~~~~~~~----~~   89 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTI-----------------------------TTPNPRTGGEHPA----II   89 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEE-----------------------------EEECCCTTCCCCS----EE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEE-----------------------------ecCCceeeeeCCc----eE
Confidence            34578999999999999999999865543321                             1456788888886    89


Q ss_pred             EEEcCCeEEEEECC---------CCceeeeec-ccccceeeEEEcC--CCCcEEEEEeCCCcEEEEEcccCCCccce-ee
Q 018293          140 SASADKQVKIWDVA---------AGKCNLTLE-HHTDKVQAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFK-WA  206 (358)
Q Consensus       140 s~~~dg~v~iwd~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~  206 (358)
                      +++.|++|++|+..         +++.+..+. .|..+|.+++|+|  ++ .++++++.||.|++||+++++..... ..
T Consensus        90 s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~  168 (343)
T 3lrv_A           90 SRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAK  168 (343)
T ss_dssp             EECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCC
T ss_pred             EecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecC
Confidence            99999999999765         444444443 5668899999999  88 89999999999999999988764433 23


Q ss_pred             ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCcc-EEEee-cCCceeEEEecCCCCcEEEEEeCCCc
Q 018293          207 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS-FTLHA-HDKAVCTISYNPLVPNLLATGSTDKM  284 (358)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~  284 (358)
                      +...+.+++|+|+ +.++++|+.||.|++||++++         ... ..+.. |..+|++++|+|++ .+|++++ |+.
T Consensus       169 ~~~~i~~~~~~pd-g~~lasg~~dg~i~iwd~~~~---------~~~~~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~  236 (343)
T 3lrv_A          169 SDVEYSSGVLHKD-SLLLALYSPDGILDVYNLSSP---------DQASSRFPVDEEAKIKEVKFADNG-YWMVVEC-DQT  236 (343)
T ss_dssp             SSCCCCEEEECTT-SCEEEEECTTSCEEEEESSCT---------TSCCEECCCCTTSCEEEEEECTTS-SEEEEEE-SSB
T ss_pred             CCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCC---------CCCccEEeccCCCCEEEEEEeCCC-CEEEEEe-CCe
Confidence            4557999999995 569999999999999999987         444 66777 99999999999998 8999999 559


Q ss_pred             EEEEecCCCCcee-eEecCCCCcee--EEEEEcCCCCeEEEEEcc-CCeEEEEEccCCCcc
Q 018293          285 VKLWDLSNNQPSC-IASRNPKAGAV--FSVAFSEDSPFVLAIGGS-KGKLEIWDTLSDAGI  341 (358)
Q Consensus       285 i~i~d~~~~~~~~-~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~  341 (358)
                      |++||+++.+... +..+..|...+  .+++|+|++++ |++++. |+.|++|++.+....
T Consensus       237 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-l~~~s~~d~~i~v~~~~~~~~~  296 (343)
T 3lrv_A          237 VVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN-MIAYSNESNSLTIYKFDKKTKN  296 (343)
T ss_dssp             EEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE-EEEEETTTTEEEEEEECTTTCS
T ss_pred             EEEEEcCCCCcceeecccccccccccceEEEECCCCCE-EEEecCCCCcEEEEEEcccccc
Confidence            9999999876422 11112233334  36999999996 777776 999999999765543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-33  Score=234.24  Aligned_cols=279  Identities=8%  Similarity=0.023  Sum_probs=198.2

Q ss_pred             ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEc
Q 018293            3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDL   82 (358)
Q Consensus         3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~   82 (358)
                      +.++++++++|..++     .+++|+...+.....+.      ...+.       ++.|+|+   +++|+.|+.|++|+.
T Consensus        44 ~~~d~~~l~sg~~Dg-----~v~iwd~~~~~~~~~~~------~~~v~-------~~~~~~~---~~s~s~D~~i~~w~~  102 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDG-----ALHFTQLKDSKTITTIT------TPNPR-------TGGEHPA---IISRGPCNRLLLLYP  102 (343)
T ss_dssp             SSEEEEEEEEEEETT-----EEEEEEESSSSCEEEEE------EECCC-------TTCCCCS---EEEECSTTEEEEEET
T ss_pred             hcCCCCEEEEECCCC-----cEEEEECCCCcEEEEEe------cCCce-------eeeeCCc---eEEecCCCeEEEEEc
Confidence            456788999998887     88888887653222221      11122       3344666   999999999999988


Q ss_pred             ccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCC--CCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           83 DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK--EFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      ........  .               ...........+|...|.+++|+|  + +.++++|+.||+|++||+++++....
T Consensus       103 ~~~~~~~~--~---------------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~  164 (343)
T 3lrv_A          103 GNQITILD--S---------------KTNKVLREIEVDSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDDSQYIV  164 (343)
T ss_dssp             TTEEEEEE--T---------------TTCCEEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEE
T ss_pred             cCceEEee--c---------------CCcceeEEeecCCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCCcEEEE
Confidence            63211000  0               000101112235778999999999  8 67999999999999999999988766


Q ss_pred             ec-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-cceee-ecCCeeeEEEcCCCCCeEEEEecCCeEEEEE
Q 018293          161 LE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWA-VAADVESLAWDPHAEHSFVVSLEDGTIKGFD  237 (358)
Q Consensus       161 ~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d  237 (358)
                      .. .+...+.+++|+|++ .++++|+.||.|++||+++++.. ..... |...|.+++|+|+ +.++++++ ++.|++||
T Consensus       165 ~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~-g~~l~s~~-~~~v~iwd  241 (343)
T 3lrv_A          165 HSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADN-GYWMVVEC-DQTVVCFD  241 (343)
T ss_dssp             ECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTT-SSEEEEEE-SSBEEEEE
T ss_pred             EecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEE
Confidence            63 455689999999999 89999999999999999998876 43444 7899999999995 55888888 55999999


Q ss_pred             cccCCCCCCCCCCCccEEEeecCCce--eEEEecCCCCcEEEEEeC-CCcEEEEecCCCCceeeEecCCCCceeEEEEEc
Q 018293          238 IRTAKSDPDSTSQQSSFTLHAHDKAV--CTISYNPLVPNLLATGST-DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS  314 (358)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~i--~~i~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  314 (358)
                      +++.....      .+..+..|...+  .+++|+|++ .+|++++. |+.+++|++......  ...    .++..++|.
T Consensus       242 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~~~~~--~~~----~~~~~~~~~  308 (343)
T 3lrv_A          242 LRKDVGTL------AYPTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKFDKKTKN--WTK----DEESALCLQ  308 (343)
T ss_dssp             TTSSTTCB------SSCCCBC-----CCEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCS--EEE----EEEEECCC-
T ss_pred             cCCCCcce------eecccccccccccceEEEECCCC-CEEEEecCCCCcEEEEEEcccccc--eEe----cCceeEecC
Confidence            99873211      111122233333  469999998 89999888 999999999766522  221    567888898


Q ss_pred             C---CCCeEEEEEccCCeEEEEEccC
Q 018293          315 E---DSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       315 ~---~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      +   +... +++++.||.+.++-...
T Consensus       309 ~~~~~~~~-l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          309 SDTADFTD-MDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             ---CCCCE-EEEEEETTEEEEEEECS
T ss_pred             ccccccce-eEEEecCCceEEEEecC
Confidence            8   7774 77888999998876443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.5e-32  Score=237.21  Aligned_cols=249  Identities=22%  Similarity=0.365  Sum_probs=203.6

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      .||++ ++||+|. |++|+|||..+++....                         ..+.+|...|++++|+|+ +.+|+
T Consensus       112 ~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-------------------------~~~~~~~~~V~sv~fspd-g~~la  163 (420)
T 4gga_A          112 DWSSG-NVLAVAL-DNSVYLWSASSGDILQL-------------------------LQMEQPGEYISSVAWIKE-GNYLA  163 (420)
T ss_dssp             EECTT-SEEEEEE-TTEEEEEETTTCCEEEE-------------------------EECCSTTCCEEEEEECTT-SSEEE
T ss_pred             EECCC-CEEEEEe-CCEEEEEECCCCCEEEE-------------------------EEecCCCCcEEEEEECCC-CCEEE
Confidence            34654 5888875 99999999987654332                         234468899999999999 67999


Q ss_pred             EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-cceeeecCCeeeEEEcC
Q 018293          140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDP  218 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~  218 (358)
                      +|+.||+|++||+++++++..+.+|...+.++.+++   .++++++.|+.+++||.+..... .....|...+..+.|+|
T Consensus       164 sgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~  240 (420)
T 4gga_A          164 VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  240 (420)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             EEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence            999999999999999999999999999999988864   68999999999999999876543 34556888999999999


Q ss_pred             CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE--eCCCcEEEEecCCCCce
Q 018293          219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG--STDKMVKLWDLSNNQPS  296 (358)
Q Consensus       219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~  296 (358)
                      + +.++++++.|+.+++||...++...     ..+.....|...|.+++|+|.+..+++++  +.|+.|++||+.+++. 
T Consensus       241 ~-g~~l~s~~~D~~v~i~~~~~~~~~~-----~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~-  313 (420)
T 4gga_A          241 D-GRHLASGGNDNLVNVWPSAPGEGGW-----VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-  313 (420)
T ss_dssp             T-SSEEEEEETTSCEEEEESSCCSSCS-----CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE-
T ss_pred             C-CCeeeeeeccccceEEeeccccccc-----eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc-
Confidence            5 5699999999999999998764322     45677788999999999999887888765  4799999999999873 


Q ss_pred             eeEecCCCCceeEEEEEcCCCCeEEEEE-ccCCeEEEEEccCCCccccccccC
Q 018293          297 CIASRNPKAGAVFSVAFSEDSPFVLAIG-GSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                       ...+.. ...+.++.|+|+++.+++++ +.||.|+|||+.+++.+..+-+|.
T Consensus       314 -~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~  364 (420)
T 4gga_A          314 -LSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT  364 (420)
T ss_dssp             -EEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS
T ss_pred             -ceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC
Confidence             444443 35688999999999755443 379999999999999887766554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-33  Score=243.05  Aligned_cols=208  Identities=15%  Similarity=0.095  Sum_probs=171.9

Q ss_pred             cCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECC--CCceeeeec--ccccceeeEEEcCCCCcEEEEEeCCCcEEEE
Q 018293          118 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA--AGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMK  193 (358)
Q Consensus       118 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  193 (358)
                      ..+|...|.+++|+|++..++++|+.||.|++||+.  +++.+..+.  .|...|.+++|+|++ .+|++++.+|.+++|
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~  176 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSI  176 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEE
Confidence            346778999999999954335899999999999999  888888776  567889999999999 899999999999999


Q ss_pred             EcccCCCcc----ceeeecCCeeeEEEcCC--CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEE-EeecCCceeEE
Q 018293          194 DARISTHSG----FKWAVAADVESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTI  266 (358)
Q Consensus       194 d~~~~~~~~----~~~~~~~~i~~~~~~~~--~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~i~~i  266 (358)
                      ++.+.....    ....|...|.+++|+|+  ++.++++++.|+.|++||++++         ..+.. +.+|...|.++
T Consensus       177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~---------~~~~~~~~~h~~~v~~~  247 (450)
T 2vdu_B          177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC---------FIVDKWLFGHKHFVSSI  247 (450)
T ss_dssp             ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT---------TCEEEECCCCSSCEEEE
T ss_pred             ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC---------ceeeeeecCCCCceEEE
Confidence            998876543    56678899999999996  2568999999999999999876         55555 55899999999


Q ss_pred             EecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC-----------------------CCCceeEEEEEcCCCCeEEEE
Q 018293          267 SYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-----------------------PKAGAVFSVAFSEDSPFVLAI  323 (358)
Q Consensus       267 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------------------~~~~~v~~~~~~~~~~~~l~~  323 (358)
                      +|+ ++ .+|++++.|+.|++||+++++........                       .....|.+++|+|++++ +++
T Consensus       248 ~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~  324 (450)
T 2vdu_B          248 CCG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF-VAF  324 (450)
T ss_dssp             EEC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE-EEE
T ss_pred             EEC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE-EEE
Confidence            999 77 89999999999999999998743333211                       22356899999999996 555


Q ss_pred             Ec-cCCeEEEEEc--cCC
Q 018293          324 GG-SKGKLEIWDT--LSD  338 (358)
Q Consensus       324 ~~-~dg~i~vw~~--~~~  338 (358)
                      ++ .|+.|++|++  .++
T Consensus       325 ~~~~d~~i~iw~~~~~~~  342 (450)
T 2vdu_B          325 FVEATKCIIILEMSEKQK  342 (450)
T ss_dssp             EETTCSEEEEEEECSSST
T ss_pred             EECCCCeEEEEEeccCCC
Confidence            55 8999999999  544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=7.6e-33  Score=234.21  Aligned_cols=264  Identities=14%  Similarity=0.237  Sum_probs=197.9

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccC--CCceEEecCCCCeEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE--KGNFMAVGSMEPAIE   78 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~g~~dg~i~   78 (358)
                      ++|+|+++.|+++..++     .+.+|+...+.........-......+.++.|       +|  ++++|++|+.||.|+
T Consensus        17 ~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A           17 VVYDFYGRHVATCSSDQ-----HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW-------ASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             EEECSSSSEEEEEETTS-----EEEEEEECSSSCCEEEEEEEECCSSCEEEEEE-------CCGGGCSEEEEEETTSCEE
T ss_pred             EEEcCCCCEEEEeeCCC-----eEEEEECCCCCCcceecceeccCCCcEEEEEE-------cCCCCCCEEEEEcCCCeEE
Confidence            47899999999998776     77777766532221121111123444557766       66  699999999999999


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC-CcEEEEEEcCCeEEEEECCCCce
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVAAGKC  157 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~  157 (358)
                      +||+.+++....                  .........+.+|...|.+++|+|+. +.+|++++.||.|++||+++++.
T Consensus        85 vwd~~~~~~~~~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  146 (351)
T 3f3f_A           85 LWEEDPDQEECS------------------GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD  146 (351)
T ss_dssp             EEEECTTSCTTS------------------SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC
T ss_pred             EEecCCCccccc------------------ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH
Confidence            999986543210                  01223445566899999999999983 45899999999999999998876


Q ss_pred             eeeec-------------ccccceeeEEEcCC--CCcEEEEEeCCCcEEEEEcccCCC--ccceeeecCCeeeEEEcCCC
Q 018293          158 NLTLE-------------HHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTH--SGFKWAVAADVESLAWDPHA  220 (358)
Q Consensus       158 ~~~~~-------------~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~  220 (358)
                      +..+.             .|...+.+++|+|+  .+..+++++.++.+.+|+......  ......|...|.+++|+|++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~  226 (351)
T 3f3f_A          147 LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSI  226 (351)
T ss_dssp             TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCS
T ss_pred             hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCC
Confidence            55443             57789999999997  238999999999998888776654  33344678899999999975


Q ss_pred             C---CeEEEEecCCeEEEEEcccCCCCCC-------------------------------------CCCCCccEEEeecC
Q 018293          221 E---HSFVVSLEDGTIKGFDIRTAKSDPD-------------------------------------STSQQSSFTLHAHD  260 (358)
Q Consensus       221 ~---~~~~~~~~dg~i~i~d~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~  260 (358)
                      .   .++++++.||.|++||++.......                                     ......+..+.+|.
T Consensus       227 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  306 (351)
T 3f3f_A          227 GRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN  306 (351)
T ss_dssp             SCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred             CCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence            3   6899999999999999987521110                                     00114455677899


Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          261 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       261 ~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      ..|++++|+|++ .+|++++.||.|++||+.+++.
T Consensus       307 ~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          307 GEVWSVSWNLTG-TILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             SCEEEEEECSSS-CCEEEEETTSCEEEEEECTTSC
T ss_pred             ccEEEEEEcCCC-CEEEEecCCCcEEEEecCcCcc
Confidence            999999999998 8999999999999999998753

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=3.4e-32  Score=230.85  Aligned_cols=275  Identities=11%  Similarity=0.121  Sum_probs=198.6

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceE-EecCCCCeEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEI   79 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~v   79 (358)
                      ++|+|++++|++|.. +     .+.+|+....   .......  .. ....+.+       .++++++ ++|+.|+.|++
T Consensus        25 v~fs~dg~~la~g~~-~-----~~~iw~~~~~---~~~~~~~--~~-~~~~~~~-------~~~~~~~~~~~~~d~~v~i   85 (355)
T 3vu4_A           25 YEFNQDQSCLILSTL-K-----SFEIYNVHPV---AHIMSQE--MR-HLSKVRM-------LHRTNYVAFVTGVKEVVHI   85 (355)
T ss_dssp             EEECTTSSEEEEECS-S-----EEEEEEETTE---EEEEEEE--CS-CCCEEEE-------CTTSSEEEEECSSTTEEEE
T ss_pred             EEECCCCCEEEEEcC-C-----EEEEEecCCc---ceeeeee--cC-CeEEEEE-------cCCCCEEEEEECCccEEEE
Confidence            479999999998843 3     3456776543   1111111  11 1223333       5566666 67888899999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC-cee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-KCN  158 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~  158 (358)
                      ||..+++...                           .+ .|...|.+++|+++   .++++ .|+.|++||+.++ +.+
T Consensus        86 Wd~~~~~~~~---------------------------~~-~~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~  133 (355)
T 3vu4_A           86 WDDVKKQDVS---------------------------RI-KVDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRI  133 (355)
T ss_dssp             EETTTTEEEE---------------------------EE-ECSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBS
T ss_pred             EECCCCcEEE---------------------------EE-ECCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceee
Confidence            9997654332                           12 25678999999987   34444 4789999999988 777


Q ss_pred             eeecccccceeeEEEcCCCCcEEEE--EeCCCcEEEEEcccCC----------------CccceeeecCCeeeEEEcCCC
Q 018293          159 LTLEHHTDKVQAVAWNHHSPQILLS--GSFDRSVVMKDARIST----------------HSGFKWAVAADVESLAWDPHA  220 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~i~~~~~~~~~  220 (358)
                      ..+..   +...+++++   .++++  ++.||.|++||++++.                .......|...|.+++|+|+ 
T Consensus       134 ~~~~~---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~-  206 (355)
T 3vu4_A          134 TDDIR---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK-  206 (355)
T ss_dssp             SCCEE---EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT-
T ss_pred             EEecc---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC-
Confidence            77664   444566666   34444  6889999999998765                14445678999999999995 


Q ss_pred             CCeEEEEecCCe-EEEEEcccCCCCCCCCCCCccEEEe-e-cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCcee
Q 018293          221 EHSFVVSLEDGT-IKGFDIRTAKSDPDSTSQQSSFTLH-A-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  297 (358)
Q Consensus       221 ~~~~~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  297 (358)
                      +.++++++.||+ |++||++++         ..+..+. + |...|.+++|+|++ .+|++++.|+.|++||++......
T Consensus       207 g~~l~s~s~d~~~v~iwd~~~~---------~~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~~~  276 (355)
T 3vu4_A          207 SDMVATCSQDGTIIRVFKTEDG---------VLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQDNK  276 (355)
T ss_dssp             SSEEEEEETTCSEEEEEETTTC---------CEEEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSCCC
T ss_pred             CCEEEEEeCCCCEEEEEECCCC---------cEEEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCCcc
Confidence            569999999998 999999987         6777787 4 99999999999998 899999999999999998654221


Q ss_pred             eEecC---------------------CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          298 IASRN---------------------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       298 ~~~~~---------------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      ...+.                     ........++|++++++ +++++.||.+++|++..++...+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~-l~~~~~dg~~~~~~~~~~~~~~~~  343 (355)
T 3vu4_A          277 RHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSL-VVVWPHTRMIETFKVVFDDEMERW  343 (355)
T ss_dssp             SEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEE-EEEETTTTEEEEEEEEEETTTTEE
T ss_pred             cccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCE-EEEEeCCCeEEEEEEEcCCCCceE
Confidence            11111                     11223466899999994 888999999999999877655443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=3e-32  Score=234.62  Aligned_cols=278  Identities=13%  Similarity=0.115  Sum_probs=207.0

Q ss_pred             cEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceE-EecCCCCeEEEEEccccc
Q 018293            8 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLDVID   86 (358)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~vw~~~~~~   86 (358)
                      .+++++..++     .+++|+...+.....+.++     ..+.++.|       +|+++++ ++++.|+.|++||+.+++
T Consensus         3 ~l~vs~~~d~-----~v~v~d~~~~~~~~~~~~~-----~~~~~~~~-------s~dg~~l~~~~~~d~~i~v~d~~~~~   65 (391)
T 1l0q_A            3 FAYIANSESD-----NISVIDVTSNKVTATIPVG-----SNPMGAVI-------SPDGTKVYVANAHSNDVSIIDTATNN   65 (391)
T ss_dssp             EEEEEETTTT-----EEEEEETTTTEEEEEEECS-----SSEEEEEE-------CTTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             EEEEEcCCCC-----EEEEEECCCCeEEEEeecC-----CCcceEEE-------CCCCCEEEEECCCCCeEEEEECCCCe
Confidence            4555565555     7888888765222222222     22345544       8999876 677799999999997654


Q ss_pred             CcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeeccccc
Q 018293           87 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTD  166 (358)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  166 (358)
                      ....                           +. +...+.+++|+|++..++++++.++.|++||+.+++.+..+..+ .
T Consensus        66 ~~~~---------------------------~~-~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~  116 (391)
T 1l0q_A           66 VIAT---------------------------VP-AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-K  116 (391)
T ss_dssp             EEEE---------------------------EE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-S
T ss_pred             EEEE---------------------------EE-CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-C
Confidence            3321                           11 22389999999995544456667899999999999988887754 5


Q ss_pred             ceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC
Q 018293          167 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD  246 (358)
Q Consensus       167 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~  246 (358)
                      .+.+++|+|++..++++++.++.|++||+.+++... .......+.+++|+|++..+++++..++.|++||+++.     
T Consensus       117 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-----  190 (391)
T 1l0q_A          117 SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN-TVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-----  190 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-----
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-EEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-----
Confidence            689999999994444788889999999998876654 33345667999999977655578888999999999876     


Q ss_pred             CCCCCccEEEeecCCceeEEEecCCCCcEEEEEe---CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEE
Q 018293          247 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS---TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAI  323 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  323 (358)
                          .....+. +...+.+++|+|++ .+|++++   .++.|++||+.+++.  +..+..+. .+.+++|+|++++++++
T Consensus       191 ----~~~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~~-~~~~~~~s~dg~~l~~s  261 (391)
T 1l0q_A          191 ----SVIDTVK-VEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKI--TARIPVGP-DPAGIAVTPDGKKVYVA  261 (391)
T ss_dssp             ----EEEEEEE-CSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEE--EEEEECCS-SEEEEEECTTSSEEEEE
T ss_pred             ----eEEEEEe-cCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeE--EEEEecCC-CccEEEEccCCCEEEEE
Confidence                4444443 56678999999998 6777666   689999999998874  44444443 47899999999977788


Q ss_pred             EccCCeEEEEEccCCCccccccc
Q 018293          324 GGSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       324 ~~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                      ++.|+.|++||+.+++.+.....
T Consensus       262 ~~~d~~v~v~d~~~~~~~~~~~~  284 (391)
T 1l0q_A          262 LSFXNTVSVIDTATNTITATMAV  284 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEEC
T ss_pred             cCCCCEEEEEECCCCcEEEEEEC
Confidence            89999999999999887655433

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-33  Score=238.36  Aligned_cols=213  Identities=24%  Similarity=0.367  Sum_probs=184.7

Q ss_pred             cccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECC--CCceeeeecccccceeeEEEcCC--CCcEEEEEeCCCcEE
Q 018293          116 YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA--AGKCNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVV  191 (358)
Q Consensus       116 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~  191 (358)
                      ..+.+|...|++++|+|+ +.+|++|+.||.|++||+.  +++.+..+.+|...|++++|+++  + .+|++++.||.|+
T Consensus         5 ~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~   82 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVL   82 (379)
T ss_dssp             CCEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEE
T ss_pred             EEecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEE
Confidence            456689999999999999 6799999999999999998  56777888999999999999877  6 8999999999999


Q ss_pred             EEEcccCC--CccceeeecCCeeeEEEcCCC-CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEe
Q 018293          192 MKDARIST--HSGFKWAVAADVESLAWDPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY  268 (358)
Q Consensus       192 i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  268 (358)
                      +||+++++  .......+...+.+++|+|+. +.++++++.||.|++||++....       .....+..|...|.+++|
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~v~~~~~  155 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-------TSPIIIDAHAIGVNSASW  155 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-------CCEEEEECCTTCEEEEEE
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-------eeeEEecCCCCceEEEEE
Confidence            99999876  444455678899999999963 56999999999999999987632       345567789999999999


Q ss_pred             cC-------------CCCcEEEEEeCCCcEEEEecCCCCce--eeEecCCCCceeEEEEEcCC---CCeEEEEEccCCeE
Q 018293          269 NP-------------LVPNLLATGSTDKMVKLWDLSNNQPS--CIASRNPKAGAVFSVAFSED---SPFVLAIGGSKGKL  330 (358)
Q Consensus       269 ~~-------------~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i  330 (358)
                      +|             ++ .+|++++.||.|++||+++....  ....+..|...|.+++|+|+   +. +|++++.||.|
T Consensus       156 ~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~dg~i  233 (379)
T 3jrp_A          156 APATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTC  233 (379)
T ss_dssp             CCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETTSCE
T ss_pred             cCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCCCEE
Confidence            99             45 89999999999999999876532  44567889999999999999   67 69999999999


Q ss_pred             EEEEccCCC
Q 018293          331 EIWDTLSDA  339 (358)
Q Consensus       331 ~vw~~~~~~  339 (358)
                      ++||+.+++
T Consensus       234 ~iwd~~~~~  242 (379)
T 3jrp_A          234 IIWTQDNEQ  242 (379)
T ss_dssp             EEEEESSTT
T ss_pred             EEEeCCCCC
Confidence            999999864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-33  Score=260.74  Aligned_cols=233  Identities=16%  Similarity=0.181  Sum_probs=188.4

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      +|+|++++||+|+.||.|+||+....+..                            ....|...|.+++|+| +. +|+
T Consensus        24 afspdg~~lAsgs~Dg~I~lw~~~~~~~~----------------------------~~~~~~~~V~~l~fsp-g~-~L~   73 (902)
T 2oaj_A           24 AFDFTQNLLAIATVTGEVHIYGQQQVEVV----------------------------IKLEDRSAIKEMRFVK-GI-YLV   73 (902)
T ss_dssp             EEETTTTEEEEEETTSEEEEECSTTCEEE----------------------------EECSSCCCEEEEEEET-TT-EEE
T ss_pred             EECCCCCEEEEEeCCCEEEEEeCCCcEEE----------------------------EEcCCCCCEEEEEEcC-CC-EEE
Confidence            34899999999999999999998643211                            1124788999999999 44 999


Q ss_pred             EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-----------cceeeec
Q 018293          140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-----------GFKWAVA  208 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~  208 (358)
                      +++.|++|++||+++++++..+. |...|++++|+|++ .++++|+.||.|++||+++....           .....|.
T Consensus        74 S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~  151 (902)
T 2oaj_A           74 VINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL  151 (902)
T ss_dssp             EEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred             EEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence            99999999999999999888886 67899999999999 89999999999999999876542           1123567


Q ss_pred             CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec------------------CCceeEEEecC
Q 018293          209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------------------DKAVCTISYNP  270 (358)
Q Consensus       209 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~------------------~~~i~~i~~~~  270 (358)
                      ..|.+++|+|++...+++|+.||.| +||+++.         .....+..|                  ...|++++|+|
T Consensus       152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp  221 (902)
T 2oaj_A          152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN---------EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP  221 (902)
T ss_dssp             CCCCEEEEETTEEEEEEEECSSCEE-EEETTTT---------EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred             CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC---------ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence            8999999999766789999999999 9999886         445555444                  57799999999


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCCCceeeEec---C-------------CCCceeEEEEEc----CCCCeEEEEEccC---
Q 018293          271 LVPNLLATGSTDKMVKLWDLSNNQPSCIASR---N-------------PKAGAVFSVAFS----EDSPFVLAIGGSK---  327 (358)
Q Consensus       271 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~-------------~~~~~v~~~~~~----~~~~~~l~~~~~d---  327 (358)
                      ++ .+|++|+.||.|++||+++++......+   .             .|..+|.+++|+    |++..++++|+.|   
T Consensus       222 dg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~  300 (902)
T 2oaj_A          222 NS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRG  300 (902)
T ss_dssp             TS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTS
T ss_pred             CC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCC
Confidence            98 8999999999999999999875333222   1             135589999995    4544578888765   


Q ss_pred             --CeEEEEEc
Q 018293          328 --GKLEIWDT  335 (358)
Q Consensus       328 --g~i~vw~~  335 (358)
                        +.+.+|++
T Consensus       301 ~~~~v~~~~~  310 (902)
T 2oaj_A          301 DNQSLTMIDL  310 (902)
T ss_dssp             SCCCEEEEEE
T ss_pred             CCceEEEEec
Confidence              37889985

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=244.38  Aligned_cols=195  Identities=11%  Similarity=0.117  Sum_probs=159.6

Q ss_pred             CCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeeccccc-----ceeeEEEcCCCCcEEEEEeCCCcEEEEE
Q 018293          120 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTD-----KVQAVAWNHHSPQILLSGSFDRSVVMKD  194 (358)
Q Consensus       120 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~dg~i~i~d  194 (358)
                      .|...|.+++|+|+ +.+||+++.||.|++||.+.  ++..+. |..     .+.+++|+|+| ++|++|+.||+|++||
T Consensus        83 ~~~~~V~~vawSPd-G~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd  157 (588)
T 2j04_A           83 QPVCYPRVCKPSPI-DDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFS  157 (588)
T ss_dssp             SCSCCEEEEEECSS-SSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEE
T ss_pred             CCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEE
Confidence            45789999999999 67999999999999999544  666666 665     49999999999 9999999999999999


Q ss_pred             cccCCC-------ccce----eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eecCCc
Q 018293          195 ARISTH-------SGFK----WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKA  262 (358)
Q Consensus       195 ~~~~~~-------~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~  262 (358)
                      +.++..       ....    .+|...|.+++|+|++   +++++.|+.|++||+.....      ......+ .+|...
T Consensus       158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~------~~~~~tL~~~h~~~  228 (588)
T 2j04_A          158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSH------QPVSRMIQNASRRK  228 (588)
T ss_dssp             CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSS------CCCEEEEECCCSSC
T ss_pred             CCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCcc------ccceeeecccccCc
Confidence            998753       1211    3456799999999965   78888999999999987621      0123455 478889


Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEE--cCCCCeEEEEEccCCeEEEEEcc
Q 018293          263 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF--SEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       263 i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      |.+++|+  + ..|++++ ++.|++||+.+++.  .....+|.+.+..++|  +|++. .+++++.||+ ++|...
T Consensus       229 V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~--~~~~~gh~~~V~~va~~~s~d~~-~La~a~edG~-klw~~d  296 (588)
T 2j04_A          229 ITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSI--SSLKTGSLENFHIIPLNHEKEST-ILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CCCEEEE--T-TEEEEEC-SSEEEEEETTTTEE--EEEECSCCSCCCEEEETTCSSCE-EEEECSSCEE-EEEESS
T ss_pred             EEEEEEE--C-CEEEEEe-CCeEEEEECCCCeE--EEEEcCCCceEEEEEeeeCCCCC-EEEEEcCCCC-EEEeec
Confidence            9999999  5 7888887 69999999998763  1223379999999999  99998 5899999999 999975

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=234.34  Aligned_cols=254  Identities=19%  Similarity=0.303  Sum_probs=196.1

Q ss_pred             CCcccceeeecCCccccCC---CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCc
Q 018293           46 PAFPLCMAWLDCPLKDREK---GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT  122 (358)
Q Consensus        46 ~~~~~~~~~~~~~~~~s~~---~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  122 (358)
                      ...+.|++|       +|+   |++|++|+.||.|+|||+.+...                         .....+.+|.
T Consensus        39 ~~~v~~~~~-------~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-------------------------~~~~~~~~h~   86 (368)
T 3mmy_A           39 DDSIGCLSF-------SPPTLPGNFLIAGSWANDVRCWEVQDSGQ-------------------------TIPKAQQMHT   86 (368)
T ss_dssp             SSCEEEEEE-------CCTTSSSEEEEEEETTSEEEEEEECTTSC-------------------------EEEEEEEECS
T ss_pred             CCceEEEEE-------cCCCCCceEEEEECCCCcEEEEEcCCCCc-------------------------eeEEEecccc
Confidence            334456666       788   69999999999999999975221                         1113455799


Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEE--cCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAW--NHHSPQILLSGSFDRSVVMKDARISTH  200 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~  200 (358)
                      ..|.+++|+|+ +.+|++++.||.|++||+++++.+. +..|...|.+++|  +|++ .++++++.||.|++||+++++.
T Consensus        87 ~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~  163 (368)
T 3mmy_A           87 GPVLDVCWSDD-GSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNP  163 (368)
T ss_dssp             SCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSC
T ss_pred             CCEEEEEECcC-CCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcE
Confidence            99999999998 6799999999999999999988766 5569999999999  8888 8899999999999999998877


Q ss_pred             ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecCCC---CcEE
Q 018293          201 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLV---PNLL  276 (358)
Q Consensus       201 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~---~~~l  276 (358)
                      ... ......+.++.+.+   ..+++++.++.+.+||++...        ...... ..+...+.++.+.++.   +..+
T Consensus       164 ~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (368)
T 3mmy_A          164 MMV-LQLPERCYCADVIY---PMAVVATAERGLIVYQLENQP--------SEFRRIESPLKHQHRCVAIFKDKQNKPTGF  231 (368)
T ss_dssp             SEE-EECSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSC--------EEEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred             EEE-EecCCCceEEEecC---CeeEEEeCCCcEEEEEecccc--------chhhhccccccCCCceEEEcccCCCCCCeE
Confidence            653 34445677777765   378889999999999998752        111111 1233445556555543   1239


Q ss_pred             EEEeCCCcEEEEecCCCCc-eeeEecCCCCc------------eeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          277 ATGSTDKMVKLWDLSNNQP-SCIASRNPKAG------------AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       277 ~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~------------~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      ++++.||.|++||++.... .....+..|..            .|.+++|+|++++ |++++.||.|++||+.+++.+..
T Consensus       232 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~iwd~~~~~~~~~  310 (368)
T 3mmy_A          232 ALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-LATVGSDGRFSFWDKDARTKLKT  310 (368)
T ss_dssp             EEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCC-EEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCE-EEEEccCCeEEEEECCCCcEEEE
Confidence            9999999999999998743 34455566655            6999999999995 88999999999999999887766


Q ss_pred             cccc
Q 018293          344 RFSK  347 (358)
Q Consensus       344 ~~~~  347 (358)
                      ...+
T Consensus       311 ~~~~  314 (368)
T 3mmy_A          311 SEQL  314 (368)
T ss_dssp             CCCC
T ss_pred             ecCC
Confidence            5443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=3.3e-32  Score=237.54  Aligned_cols=281  Identities=9%  Similarity=0.038  Sum_probs=207.1

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEee-ceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVH-HHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI   79 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v   79 (358)
                      ++++|++.+++++..++     .+++|+...+........ ........+.++.|       +++++++++++.|+.|++
T Consensus       128 ~~~s~~~~~~~~~~~~~-----~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~~s~~~d~~v~~  195 (433)
T 3bws_A          128 VRFIDNTRLAIPLLEDE-----GMDVLDINSGQTVRLSPPEKYKKKLGFVETISI-------PEHNELWVSQMQANAVHV  195 (433)
T ss_dssp             CEESSSSEEEEEBTTSS-----SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEE-------GGGTEEEEEEGGGTEEEE
T ss_pred             EEEeCCCeEEEEeCCCC-----eEEEEECCCCeEeeecCcccccccCCceeEEEE-------cCCCEEEEEECCCCEEEE
Confidence            46889666666664444     578888776522111000 00011112234444       789999999999999999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  159 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  159 (358)
                      ||+.+++...                           .+..|...+.+++|+|++..++++++.|+.|++||+++++.+.
T Consensus       196 ~d~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~  248 (433)
T 3bws_A          196 FDLKTLAYKA---------------------------TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR  248 (433)
T ss_dssp             EETTTCCEEE---------------------------EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EECCCceEEE---------------------------EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE
Confidence            9997543322                           2335888999999999955444666689999999999998888


Q ss_pred             eecccccceeeEEEcCCCCcEEEEEe--------CCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCC
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGS--------FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  231 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg  231 (358)
                      .+..+ ..+.+++|+|++ ..+++++        .|+.|++||+++++... ...+...+.+++|+|++..++++++.++
T Consensus       249 ~~~~~-~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~  325 (433)
T 3bws_A          249 KTDKI-GLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLID-TIGPPGNKRHIVSGNTENKIYVSDMCCS  325 (433)
T ss_dssp             ECCCC-SEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEEE-EEEEEECEEEEEECSSTTEEEEEETTTT
T ss_pred             EecCC-CCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEEe-eccCCCCcceEEECCCCCEEEEEecCCC
Confidence            88754 568999999999 6777777        58899999998876544 3455668899999997766778889999


Q ss_pred             eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC---------------CCcEEEEecCCCCce
Q 018293          232 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---------------DKMVKLWDLSNNQPS  296 (358)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~  296 (358)
                      .|++||+.++         +....+. +...+.+++|+|++ .++++++.               ||.|++||+.+++. 
T Consensus       326 ~v~v~d~~~~---------~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~-  393 (433)
T 3bws_A          326 KIEVYDLKEK---------KVQKSIP-VFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV-  393 (433)
T ss_dssp             EEEEEETTTT---------EEEEEEE-CSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE-
T ss_pred             EEEEEECCCC---------cEEEEec-CCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCcE-
Confidence            9999999876         4444444 67789999999998 77777765               57999999998874 


Q ss_pred             eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                       +..+.. ...+.+++|+|+|+++++++..|+.|++|++..
T Consensus       394 -~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          394 -KEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             -EEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             -EEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence             333333 356899999999997555555699999999864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.4e-32  Score=233.84  Aligned_cols=193  Identities=15%  Similarity=0.186  Sum_probs=155.8

Q ss_pred             ccccCCCceEE--ecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCc
Q 018293           59 LKDREKGNFMA--VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  136 (358)
Q Consensus        59 ~~~s~~~~~l~--~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  136 (358)
                      ++|||||++|+  +++.|++|+|||+.+++...                           .+ .|...|.+++|+|+ ++
T Consensus       139 v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~---------------------------~~-~~~~~V~~v~fspd-g~  189 (365)
T 4h5i_A          139 VYISREGTVAAIASSKVPAIMRIIDPSDLTEKF---------------------------EI-ETRGEVKDLHFSTD-GK  189 (365)
T ss_dssp             EEECTTSSCEEEEESCSSCEEEEEETTTTEEEE---------------------------EE-ECSSCCCEEEECTT-SS
T ss_pred             EEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE---------------------------Ee-CCCCceEEEEEccC-Cc
Confidence            46699999976  45579999999997644332                           12 37788999999999 67


Q ss_pred             EEEEEEcCCeEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeCCC----cEEEEEcccCCCc----cceee
Q 018293          137 ILASASADKQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDR----SVVMKDARISTHS----GFKWA  206 (358)
Q Consensus       137 ~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~----~~~~~  206 (358)
                      ++++++.+ .+++|+..+++.+.  ....|...|.+++|+|++ ..+++++.|+    .+++|++......    .....
T Consensus       190 ~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~  267 (365)
T 4h5i_A          190 VVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN  267 (365)
T ss_dssp             EEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES
T ss_pred             eEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeeecC
Confidence            88888755 56777777776543  345688899999999999 8888888877    5888888765432    22345


Q ss_pred             ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecCCCCcEEEEEeCCCcE
Q 018293          207 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMV  285 (358)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i  285 (358)
                      +...|++++|+|+ +.+|++|+.|+.|++||++++         +++..+ .+|..+|++++|+|++ ++|++|+.|++|
T Consensus       268 ~~~~V~~~~~Spd-g~~lasgs~D~~V~iwd~~~~---------~~~~~~~~gH~~~V~~v~fSpdg-~~laS~S~D~tv  336 (365)
T 4h5i_A          268 RFKGITSMDVDMK-GELAVLASNDNSIALVKLKDL---------SMSKIFKQAHSFAITEVTISPDS-TYVASVSAANTI  336 (365)
T ss_dssp             SCSCEEEEEECTT-SCEEEEEETTSCEEEEETTTT---------EEEEEETTSSSSCEEEEEECTTS-CEEEEEETTSEE
T ss_pred             CCCCeEeEEECCC-CCceEEEcCCCEEEEEECCCC---------cEEEEecCcccCCEEEEEECCCC-CEEEEEeCCCeE
Confidence            6788999999995 569999999999999999987         666664 7899999999999998 899999999999


Q ss_pred             EEEecCCC
Q 018293          286 KLWDLSNN  293 (358)
Q Consensus       286 ~i~d~~~~  293 (358)
                      +|||+...
T Consensus       337 rvw~ip~~  344 (365)
T 4h5i_A          337 HIIKLPLN  344 (365)
T ss_dssp             EEEECCTT
T ss_pred             EEEEcCCC
Confidence            99999754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=3.8e-32  Score=230.57  Aligned_cols=235  Identities=11%  Similarity=0.170  Sum_probs=176.4

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      +|+|||++|++|+.+| ++||++++......                             .+...+..+++.+++..+++
T Consensus        26 ~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   75 (355)
T 3vu4_A           26 EFNQDQSCLILSTLKS-FEIYNVHPVAHIMS-----------------------------QEMRHLSKVRMLHRTNYVAF   75 (355)
T ss_dssp             EECTTSSEEEEECSSE-EEEEEETTEEEEEE-----------------------------EECSCCCEEEECTTSSEEEE
T ss_pred             EECCCCCEEEEEcCCE-EEEEecCCcceeee-----------------------------eecCCeEEEEEcCCCCEEEE
Confidence            3499999999998775 78999875332211                             11124677778777444446


Q ss_pred             EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC-CCccceeeecCCeeeEEEcC
Q 018293          140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGFKWAVAADVESLAWDP  218 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~  218 (358)
                      +++.|++|++||+.+++++..+. +...|.+++|+++.   ++++ .|+.|++||+.+. +.......   +...+++++
T Consensus        76 ~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~  147 (355)
T 3vu4_A           76 VTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN  147 (355)
T ss_dssp             ECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET
T ss_pred             EECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc
Confidence            78888999999999999988887 66799999999864   4444 4889999999987 44443332   444566666


Q ss_pred             CCCCeEEE--EecCCeEEEEEcccCCCCCCCC------CCCc-cEEEeecCCceeEEEecCCCCcEEEEEeCCCc-EEEE
Q 018293          219 HAEHSFVV--SLEDGTIKGFDIRTAKSDPDST------SQQS-SFTLHAHDKAVCTISYNPLVPNLLATGSTDKM-VKLW  288 (358)
Q Consensus       219 ~~~~~~~~--~~~dg~i~i~d~~~~~~~~~~~------~~~~-~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~  288 (358)
                         ..+++  |+.||.|++||+++........      ...+ ...+.+|...|++++|+|++ .+|++|+.|++ |++|
T Consensus       148 ---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iw  223 (355)
T 3vu4_A          148 ---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVF  223 (355)
T ss_dssp             ---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEE
T ss_pred             ---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEE
Confidence               35555  6889999999998753110000      0012 67889999999999999998 89999999998 9999


Q ss_pred             ecCCCCceeeEecC-C-CCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          289 DLSNNQPSCIASRN-P-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       289 d~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      |+++++.  +..+. + |...|.+++|+|+++ +|++++.|+.|++||+..+.
T Consensus       224 d~~~~~~--~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          224 KTEDGVL--VREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             ETTTCCE--EEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCS
T ss_pred             ECCCCcE--EEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCC
Confidence            9999884  44554 4 899999999999999 58999999999999998754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4e-31  Score=221.04  Aligned_cols=247  Identities=22%  Similarity=0.363  Sum_probs=199.2

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      |+++ +||+|. |++|+|||+.+++....                         ..+.+|...|++++|+|+ +++|++|
T Consensus        34 S~~~-~lAvg~-D~tV~iWd~~tg~~~~~-------------------------~~~~~~~~~V~~v~~~~~-~~~l~sg   85 (318)
T 4ggc_A           34 SSGN-VLAVAL-DNSVYLWSASSGDILQL-------------------------LQMEQPGEYISSVAWIKE-GNYLAVG   85 (318)
T ss_dssp             CTTS-EEEEEE-TTEEEEEETTTCCEEEE-------------------------EECCSTTCCEEEEEECTT-SSEEEEE
T ss_pred             CCCC-EEEEEe-CCEEEEEECCCCCEEEE-------------------------EEecCCCCeEEEEEECCC-CCEEEEE
Confidence            7775 788775 99999999987654432                         134468899999999999 6799999


Q ss_pred             EcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-cceeeecCCeeeEEEcCCC
Q 018293          142 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDPHA  220 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~  220 (358)
                      +.||+|++||+++++++..+.+|...+.++.+.+   ..+++++.++.+++|+....... .....+...+..+.+.++ 
T Consensus        86 s~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  161 (318)
T 4ggc_A           86 TSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD-  161 (318)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT-
T ss_pred             ECCCcEEEeecCCceeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC-
Confidence            9999999999999999999999999888776653   68999999999999998876543 345568889999999995 


Q ss_pred             CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEE--EEeCCCcEEEEecCCCCceee
Q 018293          221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA--TGSTDKMVKLWDLSNNQPSCI  298 (358)
Q Consensus       221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~  298 (358)
                      +.++++++.||.|++||+++++...     ........+...|.++.++|+++..+.  +++.++.|++||.+.....  
T Consensus       162 ~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~--  234 (318)
T 4ggc_A          162 GRHLASGGNDNLVNVWPSAPGEGGW-----VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL--  234 (318)
T ss_dssp             SSEEEEEETTSCEEEEESSCBTTBS-----CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE--
T ss_pred             CCEEEEEecCcceeEEECCCCcccc-----cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc--
Confidence            5589999999999999998764322     445667778899999999998866654  5567899999999888732  


Q ss_pred             EecCCCCceeEEEEEcCCCCeEEEE-EccCCeEEEEEccCCCccccccccC
Q 018293          299 ASRNPKAGAVFSVAFSEDSPFVLAI-GGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       299 ~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                       ....+...+..+.|+|++.+++++ |+.|+.|++||+.+++.+..+-+|.
T Consensus       235 -~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~  284 (318)
T 4ggc_A          235 -SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT  284 (318)
T ss_dssp             -EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS
T ss_pred             -ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC
Confidence             233456779999999999875443 3479999999999999887766554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=6.7e-31  Score=229.30  Aligned_cols=247  Identities=11%  Similarity=0.088  Sum_probs=192.1

Q ss_pred             ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      ++|+|++.++++++.++.|++||+.+++....                      .....+.+|...|.+++|+++ +.++
T Consensus       128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~----------------------~~~~~~~~~~~~v~~~~~~~~-~~~~  184 (433)
T 3bws_A          128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL----------------------SPPEKYKKKLGFVETISIPEH-NELW  184 (433)
T ss_dssp             CEESSSSEEEEEBTTSSSEEEEETTTCCEEEE----------------------CCCHHHHTTCCEEEEEEEGGG-TEEE
T ss_pred             EEEeCCCeEEEEeCCCCeEEEEECCCCeEeee----------------------cCcccccccCCceeEEEEcCC-CEEE
Confidence            34488888899999999999999986543321                      111134578899999999988 6799


Q ss_pred             EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcC
Q 018293          139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  218 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  218 (358)
                      ++++.|+.|++||+++++.+..+..|...+.+++|+|++..++++++.|+.|++||+++++... .......+.+++|+|
T Consensus       185 ~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~  263 (433)
T 3bws_A          185 VSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR-KTDKIGLPRGLLLSK  263 (433)
T ss_dssp             EEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-ECCCCSEEEEEEECT
T ss_pred             EEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE-EecCCCCceEEEEcC
Confidence            9999999999999999999999988999999999999994444566689999999998776544 233445689999999


Q ss_pred             CCCCeEEEEe--------cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEec
Q 018293          219 HAEHSFVVSL--------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  290 (358)
Q Consensus       219 ~~~~~~~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~  290 (358)
                      ++. .+++++        .||.|++||++++         +.... ..|...+.+++|+|++..++++++.|+.|++||+
T Consensus       264 ~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~---------~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~  332 (433)
T 3bws_A          264 DGK-ELYIAQFSASNQESGGGRLGIYSMDKE---------KLIDT-IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDL  332 (433)
T ss_dssp             TSS-EEEEEEEESCTTCSCCEEEEEEETTTT---------EEEEE-EEEEECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred             CCC-EEEEEECCCCccccCCCeEEEEECCCC---------cEEee-ccCCCCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence            655 666665        4889999999876         33333 3455678999999998556777889999999999


Q ss_pred             CCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEcc---------------CCeEEEEEccCCCccccc
Q 018293          291 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS---------------KGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       291 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------dg~i~vw~~~~~~~~~~~  344 (358)
                      .+++.  ...+. +...+.+++|+|++++ +++++.               ||.|++||+.+++.+...
T Consensus       333 ~~~~~--~~~~~-~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~  397 (433)
T 3bws_A          333 KEKKV--QKSIP-VFDKPNTIALSPDGKY-LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW  397 (433)
T ss_dssp             TTTEE--EEEEE-CSSSEEEEEECTTSSE-EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred             CCCcE--EEEec-CCCCCCeEEEcCCCCE-EEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence            98764  33333 5567999999999996 444544               579999999988766543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-32  Score=236.01  Aligned_cols=235  Identities=12%  Similarity=0.034  Sum_probs=173.7

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      +++|||||+++|+++.|++|+  |....+                              .+.+|...|.+++|+|+|   
T Consensus        20 sv~~SpDG~~iASas~D~TV~--d~~~~~------------------------------~l~gh~~~v~~V~FsPdg---   64 (588)
T 2j04_A           20 NLTWARDGTLYLTTFPDISIG--QPKYAK------------------------------DINCNSKNLFHVKEFPLE---   64 (588)
T ss_dssp             CEEECTTSCEEEECSSSEEEE--EECCCS------------------------------CCSSBGGGTEEEEEECCC---
T ss_pred             EEEECCCCCEEEEEcCCceee--cccccc------------------------------eecCCCccEEEEEECCCC---
Confidence            445599999999999999999  643221                              224799999999999994   


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecC-----Cee
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA-----DVE  212 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~i~  212 (358)
                           .++.+.+|+.+. .....+ .|...|.+++|+|+| ..|++++.||.|++||...  ...... +..     .+.
T Consensus        65 -----~~~~~~~~~~~~-~~~~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~  133 (588)
T 2j04_A           65 -----FENKLDFELAQQ-NGLLNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYH  133 (588)
T ss_dssp             -----CCCTTTTSCCCS-SCSSTT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEE
T ss_pred             -----CcceEEEEeCCC-ceEeec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEE
Confidence                 456665655432 223333 358899999999999 8999999999999999544  222122 333     499


Q ss_pred             eEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE----eecCCceeEEEecCCCCcEEEEEeCCCcEEEE
Q 018293          213 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL----HAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  288 (358)
Q Consensus       213 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~  288 (358)
                      +++|+|+ ++++++|+.||+|++||+..+....  .....+..+    .+|...|.+++|+|++   +++++.|+.|++|
T Consensus       134 svafSPD-G~~LAsgs~DGtVkIWd~~~~~l~~--~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlW  207 (588)
T 2j04_A          134 CFEWNPI-ESSIVVGNEDGELQFFSIRKNSENT--PEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSM  207 (588)
T ss_dssp             EEEECSS-SSCEEEEETTSEEEEEECCCCTTTC--CCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEE
T ss_pred             EEEEcCC-CCEEEEEcCCCEEEEEECCCCcccc--ccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEE
Confidence            9999995 5699999999999999998762100  000024555    5677899999999976   8888999999999


Q ss_pred             ecCCCCce-eeEec-CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293          289 DLSNNQPS-CIASR-NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       289 d~~~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                      |+.+++.. ....+ .+|...|.+++|+  |+ .+|+++ ++.|++||+.+++.....+++.
T Consensus       208 d~~~~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~~~~~~~~gh~  265 (588)
T 2j04_A          208 TVSASSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNYSISSLKTGSL  265 (588)
T ss_dssp             CCCSSSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTTEEEEEECSCC
T ss_pred             ECCCCccccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCCeEEEEEcCCC
Confidence            99887732 12334 4788899999999  56 577776 6999999999877643333433

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=4.2e-32  Score=233.45  Aligned_cols=295  Identities=11%  Similarity=0.055  Sum_probs=183.8

Q ss_pred             ceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccc-cccccCC-----ceecc
Q 018293           41 HHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKK-KKKSKKG-----KKSSI  114 (358)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~  114 (358)
                      +..+++..|.++.|...    ++++..|++++.|+.|.+|+...........    ...... .......     .....
T Consensus        10 ~~lpl~~~p~~~~w~~~----~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~   81 (393)
T 4gq1_A           10 YQLPLNVRPYTTTWCSQ----SPSCSNLLAIGHDTGITIYCASEEQTPGSTG----LTLQELFTIQTGLPTLHLSFSSSC   81 (393)
T ss_dssp             EECCTTCCEEEEEECTT----SGGGTTEEEEEESSEEEEEEEEECCSSSCCS----EEEEEEEEEECSSCEEEEEECTTC
T ss_pred             eEecCCCCCeEEEEeCC----CCCCCCEEEEECCCCEEEEECCCCCcccccc----cceeeeEEEecCCCeeeEeecCCc
Confidence            44566778889999543    4554444444568899999875432211000    000000 0000000     00001


Q ss_pred             ccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce-----eeeecccccceeeEEEcC--------CCCcEE
Q 018293          115 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWNH--------HSPQIL  181 (358)
Q Consensus       115 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~--------~~~~~l  181 (358)
                      ......|...+....+.++ ..+|++++.|++|++||+++++.     +..+.+|.+.|++++|+|        ++ ++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~-~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~l  159 (393)
T 4gq1_A           82 SYSENLHDGDGNVNSSPVY-SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVI  159 (393)
T ss_dssp             EEECC----------CCEE-EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEE
T ss_pred             cccccccCCCcceeecCCC-CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEE
Confidence            1122234444444444445 67899999999999999988754     345688999999999997        56 899


Q ss_pred             EEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCC------------
Q 018293          182 LSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS------------  249 (358)
Q Consensus       182 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~------------  249 (358)
                      ++++.|++|++||+++.........+...+.+++|+|++.+++++++.||.|++||+++++.......            
T Consensus       160 as~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~  239 (393)
T 4gq1_A          160 ASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL  239 (393)
T ss_dssp             EEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEE
T ss_pred             EEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec
Confidence            99999999999999988777777889999999999998777899999999999999988743221100            


Q ss_pred             ----CCccEEEeecCCceeEEEec-CCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEE-------------
Q 018293          250 ----QQSSFTLHAHDKAVCTISYN-PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV-------------  311 (358)
Q Consensus       250 ----~~~~~~~~~~~~~i~~i~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~-------------  311 (358)
                          ........+|...+.++.|+ |++ ..|++++.|+.+++||+..++.  ...+..|...+..+             
T Consensus       240 ~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~  316 (393)
T 4gq1_A          240 NTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANND--YNEISDSTMKLGPKNLLPNVQGISLFP  316 (393)
T ss_dssp             ESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSC
T ss_pred             ccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCC--CceEeeecCccccEEEccccccccccC
Confidence                00112234677889999987 666 8999999999999999987652  22233333333322             


Q ss_pred             ------EEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293          312 ------AFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       312 ------~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                            .+.+.+..++++|+.||.|++||+.+++.+.....+.
T Consensus       317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~  359 (393)
T 4gq1_A          317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG  359 (393)
T ss_dssp             CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS
T ss_pred             cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence                  2223344467888999999999999998877665544

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-31  Score=245.24  Aligned_cols=212  Identities=25%  Similarity=0.369  Sum_probs=182.1

Q ss_pred             ccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECC--CCceeeeecccccceeeEEEcCC--CCcEEEEEeCCCcEEE
Q 018293          117 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA--AGKCNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVM  192 (358)
Q Consensus       117 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i  192 (358)
                      .+.+|.+.|++++|+|+ +.+|++|+.||.|++||+.  +++.+..+.+|..+|++++|+|+  + .++++++.||.|++
T Consensus         4 ~l~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            4 IANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLI   81 (753)
T ss_dssp             ----CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEE
T ss_pred             ecccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEE
Confidence            45689999999999999 6689999999999999998  55778888999999999999987  6 89999999999999


Q ss_pred             EEcccCC--CccceeeecCCeeeEEEcCCC-CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEec
Q 018293          193 KDARIST--HSGFKWAVAADVESLAWDPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN  269 (358)
Q Consensus       193 ~d~~~~~--~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  269 (358)
                      ||+.+++  .......+...|.+++|+|+. +..+++|+.||.|++||++....       .....+..|...|.+++|+
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~-------~~~~~~~~~~~~v~~l~~~  154 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-------TSPIIIDAHAIGVNSASWA  154 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC-------CCCEEEECCSSCEEEEEEC
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC-------cceeEeecCCCceEEEEec
Confidence            9999875  444455688999999999962 66999999999999999987632       4456778899999999999


Q ss_pred             CC-------------CCcEEEEEeCCCcEEEEecCCCCc--eeeEecCCCCceeEEEEEcCC---CCeEEEEEccCCeEE
Q 018293          270 PL-------------VPNLLATGSTDKMVKLWDLSNNQP--SCIASRNPKAGAVFSVAFSED---SPFVLAIGGSKGKLE  331 (358)
Q Consensus       270 ~~-------------~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~  331 (358)
                      |.             + .++++|+.||.|++||++++..  .....+.+|...|.+++|+|+   +. ++++|+.||.|+
T Consensus       155 p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~I~  232 (753)
T 3jro_A          155 PATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCI  232 (753)
T ss_dssp             CCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSCEE
T ss_pred             CcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCEEE
Confidence            94             5 8999999999999999988743  345667889999999999999   77 699999999999


Q ss_pred             EEEccCCC
Q 018293          332 IWDTLSDA  339 (358)
Q Consensus       332 vw~~~~~~  339 (358)
                      +||+.+++
T Consensus       233 iwd~~~~~  240 (753)
T 3jro_A          233 IWTQDNEQ  240 (753)
T ss_dssp             EEEESSSS
T ss_pred             EecCCCCC
Confidence            99999864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1.1e-29  Score=206.73  Aligned_cols=184  Identities=16%  Similarity=0.153  Sum_probs=141.0

Q ss_pred             CcEEEEEE--cCCeEEEEEC-CCCceeeeecccccceeeEEEcC---CCCcEEEEEeCCCcEEEEEcccCCCccceeeec
Q 018293          135 RNILASAS--ADKQVKIWDV-AAGKCNLTLEHHTDKVQAVAWNH---HSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  208 (358)
Q Consensus       135 ~~~l~s~~--~dg~v~iwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  208 (358)
                      ++++.+++  .|+.|++|++ .+++.+..+..|...++.++|++   ++ .+|++++.|++|++||+++++....+..+.
T Consensus       145 g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~  223 (356)
T 2w18_A          145 RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQLLKKMHIDD  223 (356)
T ss_dssp             TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred             CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence            54555533  5999999999 45888888888999999999998   55 899999999999999999998776555433


Q ss_pred             ---CCeeeEEEcCCCCCeE------------EEEecCCeEEEEEcccCCCCCCCCCCCccEEE-----eecCCceeEEEe
Q 018293          209 ---ADVESLAWDPHAEHSF------------VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-----HAHDKAVCTISY  268 (358)
Q Consensus       209 ---~~i~~~~~~~~~~~~~------------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~i~~  268 (358)
                         ..+.+++|+|++. ++            ++|+.|++|++||..++         +.+..+     .+|...+.+..+
T Consensus       224 ~~v~~v~~vafSpdG~-~lvs~s~~~~~w~laSGs~D~tIklWd~~tg---------k~l~v~~~~~p~Gh~~~~lsg~~  293 (356)
T 2w18_A          224 SYQASVCHKAYSEMGL-LFIVLSHPCAKESESLRSPVFQLIVINPKTT---------LSVGVMLYCLPPGQAGRFLEGDV  293 (356)
T ss_dssp             ---CCCEEEEEEETTE-EEEEEC------------CCEEEEEEETTTT---------EEEEEEEECCCTTCCCCEEEEEE
T ss_pred             cceeeeEEEEECCCCC-EEEEeccCCCcceeeccCCCcEEEEEECCCC---------EEEEEEEeeccCCCcceeEcccc
Confidence               3577778999654 43            56888999999999877         433333     255555544444


Q ss_pred             cCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeE-EEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          269 NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF-SVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       269 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      +  + .++++|+.|++|+|||+.+++  ++..+.+|...+. +++|+|||+ +|++|+.|++|+|||+
T Consensus       294 s--g-~~lASgS~DgTIkIWDl~tGk--~l~tL~gH~~~vvs~vafSPDG~-~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          294 K--D-HCAAAILTSGTIAIWDLLLGQ--CTALLPPVSDQHWSFVKWSGTDS-HLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             E--T-TEEEEEETTSCEEEEETTTCS--EEEEECCC--CCCCEEEECSSSS-EEEEECTTSCEEEEEE
T ss_pred             C--C-CEEEEEcCCCcEEEEECCCCc--EEEEecCCCCCeEEEEEECCCCC-EEEEEECCCcEEEecC
Confidence            4  4 789999999999999999998  6777888876555 589999999 4999999999999996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=3.5e-29  Score=215.48  Aligned_cols=236  Identities=14%  Similarity=0.107  Sum_probs=183.0

Q ss_pred             ceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCC
Q 018293           66 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK  145 (358)
Q Consensus        66 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg  145 (358)
                      .++++++.|+.|++||+.+++...                           .+..| ..+.+++|+|++..++++++.|+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~---------------------------~~~~~-~~~~~~~~s~dg~~l~~~~~~d~   54 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTA---------------------------TIPVG-SNPMGAVISPDGTKVYVANAHSN   54 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEE---------------------------EEECS-SSEEEEEECTTSSEEEEEEGGGT
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEE---------------------------EeecC-CCcceEEECCCCCEEEEECCCCC
Confidence            468899999999999997654332                           22234 45899999999554557788999


Q ss_pred             eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEE
Q 018293          146 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV  225 (358)
Q Consensus       146 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  225 (358)
                      .|++||+.+++.+..+..+. .+.+++|+|++..++++++.++.|++||+.+++... .......+.+++|+|++..+++
T Consensus        55 ~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~  132 (391)
T 1l0q_A           55 DVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG-TVKTGKSPLGLALSPDGKKLYV  132 (391)
T ss_dssp             EEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEECSSSEEEEEECTTSSEEEE
T ss_pred             eEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE-EEeCCCCcceEEECCCCCEEEE
Confidence            99999999999988887554 899999999994444566678999999999877655 3345567899999997665557


Q ss_pred             EEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCC
Q 018293          226 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA  305 (358)
Q Consensus       226 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  305 (358)
                      +++.++.|++||++++         +....+..+ ..+.+++|+|++..++++++.++.|++||+++++.  ..... +.
T Consensus       133 ~~~~~~~v~~~d~~~~---------~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~-~~  199 (391)
T 1l0q_A          133 TNNGDKTVSVINTVTK---------AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV--IDTVK-VE  199 (391)
T ss_dssp             EETTTTEEEEEETTTT---------EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEE-CS
T ss_pred             EeCCCCEEEEEECCCC---------cEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE--EEEEe-cC
Confidence            8888999999999876         555566555 45699999999844447788899999999998863  33332 45


Q ss_pred             ceeEEEEEcCCCCeEEEEEc--cCCeEEEEEccCCCccccc
Q 018293          306 GAVFSVAFSEDSPFVLAIGG--SKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       306 ~~v~~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~  344 (358)
                      ..+.+++|+|+++++++++.  .++.|++||+.+++.+...
T Consensus       200 ~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~  240 (391)
T 1l0q_A          200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI  240 (391)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence            67899999999996444443  6899999999988765543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1.2e-28  Score=200.59  Aligned_cols=187  Identities=13%  Similarity=0.138  Sum_probs=140.0

Q ss_pred             CCCceEEecC--CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCC---CCCcE
Q 018293           63 EKGNFMAVGS--MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK---EFRNI  137 (358)
Q Consensus        63 ~~~~~l~~g~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~  137 (358)
                      ++++++.+++  .|+.|++|++....                          +....+.+|...++.++|++   + +.+
T Consensus       143 ~~g~lv~ss~~g~d~~V~~~~~s~dG--------------------------~~~~s~~~~~~~v~~l~fs~~~g~-~~~  195 (356)
T 2w18_A          143 TKRRLVSSSGTLSDQQVEVMTFAEDG--------------------------GGKENQFLMPPEETILTFAEVQGM-QEA  195 (356)
T ss_dssp             TTTEEEEEESSSTTCEEEEEEECTTS--------------------------CEEEEEEECCCSSCEEEEEEEETS-TTE
T ss_pred             CCCcEEEecccCCCCcEEEEEECCCC--------------------------ceeeeeccCCCceeeEEeeccCCC-Cce
Confidence            4677777743  69999999995311                          11223446888888888888   4 679


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeecccc---cceeeEEEcCCCCcEE------------EEEeCCCcEEEEEcccCCCcc
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEHHT---DKVQAVAWNHHSPQIL------------LSGSFDRSVVMKDARISTHSG  202 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~  202 (358)
                      |++|+.|++|+|||++++++++++.+|.   ..+.+++|+|++ .++            ++|+.|++|++||..+++...
T Consensus       196 LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~  274 (356)
T 2w18_A          196 LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG  274 (356)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEEE
T ss_pred             EEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE
Confidence            9999999999999999999999998654   357777999998 554            568889999999998876543


Q ss_pred             cee-----eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCcee-EEEecCCCCcEE
Q 018293          203 FKW-----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC-TISYNPLVPNLL  276 (358)
Q Consensus       203 ~~~-----~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~~l  276 (358)
                      ...     ++...+.+..++   +.++++++.|++|++||+.++         +.+..+.+|...+. +++|+|++ .+|
T Consensus       275 v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tG---------k~l~tL~gH~~~vvs~vafSPDG-~~L  341 (356)
T 2w18_A          275 VMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLG---------QCTALLPPVSDQHWSFVKWSGTD-SHL  341 (356)
T ss_dssp             EEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTC---------SEEEEECCC--CCCCEEEECSSS-SEE
T ss_pred             EEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCC---------cEEEEecCCCCCeEEEEEECCCC-CEE
Confidence            221     222223333332   347899999999999999988         78888988877655 68999998 899


Q ss_pred             EEEeCCCcEEEEec
Q 018293          277 ATGSTDKMVKLWDL  290 (358)
Q Consensus       277 ~~~~~dg~i~i~d~  290 (358)
                      ++|+.|++|+|||+
T Consensus       342 aSGS~D~TIklWd~  355 (356)
T 2w18_A          342 LAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEECTTSCEEEEEE
T ss_pred             EEEECCCcEEEecC
Confidence            99999999999996

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=8.9e-27  Score=207.42  Aligned_cols=286  Identities=12%  Similarity=0.095  Sum_probs=207.8

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      .++|++.+++++..++     .+.+|+...++....+.     ....+.       .++|+|||++|++++.|+.|++||
T Consensus       144 ~~~p~~~~~vs~~~d~-----~V~v~D~~t~~~~~~i~-----~g~~~~-------~v~~spdg~~l~v~~~d~~V~v~D  206 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAG-----QIALVDGDSKKIVKVID-----TGYAVH-------ISRMSASGRYLLVIGRDARIDMID  206 (543)
T ss_dssp             CCCGGGEEEEEEGGGT-----EEEEEETTTCCEEEEEE-----CSTTEE-------EEEECTTSCEEEEEETTSEEEEEE
T ss_pred             ccCCCCEEEEEEcCCC-----eEEEEECCCceEEEEEe-----cCcccc-------eEEECCCCCEEEEECCCCeEEEEE
Confidence            4788888777776665     78888887652211111     111122       345699999999999999999999


Q ss_pred             c--ccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCC----CCCcEEEEEE-cCCeEEEEECCC
Q 018293           82 L--DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK----EFRNILASAS-ADKQVKIWDVAA  154 (358)
Q Consensus        82 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~l~s~~-~dg~v~iwd~~~  154 (358)
                      +  .+++...                           .+. +...+..++|+|    + ++++++++ .+++|.+||..+
T Consensus       207 ~~~~t~~~~~---------------------------~i~-~g~~p~~va~sp~~~~d-g~~l~v~~~~~~~v~v~D~~t  257 (543)
T 1nir_A          207 LWAKEPTKVA---------------------------EIK-IGIEARSVESSKFKGYE-DRYTIAGAYWPPQFAIMDGET  257 (543)
T ss_dssp             TTSSSCEEEE---------------------------EEE-CCSEEEEEEECCSTTCT-TTEEEEEEEESSEEEEEETTT
T ss_pred             CcCCCCcEEE---------------------------EEe-cCCCcceEEeCCCcCCC-CCEEEEEEccCCeEEEEeccc
Confidence            9  4433221                           122 345689999999    8 55777776 589999999999


Q ss_pred             Cceeeeeccc----------c-cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-ceeeecCCeeeEEEcCCCCC
Q 018293          155 GKCNLTLEHH----------T-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEH  222 (358)
Q Consensus       155 ~~~~~~~~~~----------~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~  222 (358)
                      ++++..+..+          . ..+.++.++|+++.++++...++.|.+||..+.+... ....+...+..+.|+|++..
T Consensus       258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~  337 (543)
T 1nir_A          258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRY  337 (543)
T ss_dssp             CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCE
T ss_pred             cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCE
Confidence            9988887642          2 2688999999887788888899999999998766443 12345567889999997664


Q ss_pred             eEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee----cCCceeEEEecCCCCcEEEEEe-CCCcEEEEecCCCC---
Q 018293          223 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA----HDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQ---  294 (358)
Q Consensus       223 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~d~~~~~---  294 (358)
                      +++++..+++|.+||..++         +....+..    |.+....+ ++|+++.+++++. .|++|.+||+.+..   
T Consensus       338 l~va~~~~~~v~v~D~~tg---------~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~  407 (543)
T 1nir_A          338 FMTAANNSNKVAVIDSKDR---------RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ  407 (543)
T ss_dssp             EEEEEGGGTEEEEEETTTT---------EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred             EEEEecCCCeEEEEECCCC---------eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch
Confidence            5556667899999999987         55555553    44333333 5787546777775 58999999998721   


Q ss_pred             --ceeeEecCCCCceeEEEEEcCCCCeEEEEEc-------cCCeEEEEEccCCCccccc
Q 018293          295 --PSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-------SKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       295 --~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~dg~i~vw~~~~~~~~~~~  344 (358)
                        ...+..+..|...+..++++|++++ |++++       .+++|.+||+.+++...+.
T Consensus       408 ~~~~~v~~l~~~g~~~~~v~~~pdg~~-l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~  465 (543)
T 1nir_A          408 YAWKKVAELQGQGGGSLFIKTHPKSSH-LYVDTTFNPDARISQSVAVFDLKNLDAKYQV  465 (543)
T ss_dssp             TBTSEEEEEECSCSCCCCEECCTTCCE-EEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred             hcCeEEEEEEcCCCCceEEEcCCCCCc-EEEecCCCCCcccCceEEEEECCCCCCCeEE
Confidence              2367778888788889999999996 66655       2679999999999877443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=6.8e-27  Score=208.15  Aligned_cols=305  Identities=11%  Similarity=0.102  Sum_probs=213.3

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEec--cCCCCCceEeeceeecCCcccceeeecCCccccC----CCceEEecCC-
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEE--SDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE----KGNFMAVGSM-   73 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~~~~l~~g~~-   73 (358)
                      +.|+|+++.|+++..++     .|.+|+.  ...   ..  .........+       ..++|+|    +|++|++++. 
T Consensus       184 v~~spdg~~l~v~~~d~-----~V~v~D~~~~t~---~~--~~~i~~g~~p-------~~va~sp~~~~dg~~l~v~~~~  246 (543)
T 1nir_A          184 SRMSASGRYLLVIGRDA-----RIDMIDLWAKEP---TK--VAEIKIGIEA-------RSVESSKFKGYEDRYTIAGAYW  246 (543)
T ss_dssp             EEECTTSCEEEEEETTS-----EEEEEETTSSSC---EE--EEEEECCSEE-------EEEEECCSTTCTTTEEEEEEEE
T ss_pred             EEECCCCCEEEEECCCC-----eEEEEECcCCCC---cE--EEEEecCCCc-------ceEEeCCCcCCCCCEEEEEEcc
Confidence            36899999999997765     7888888  433   11  1122222222       2455699    9999999985 


Q ss_pred             CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCc-ccEEEEecCCCCCcEEEEEEcCCeEEEEEC
Q 018293           74 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT-DSVLGLAWNKEFRNILASASADKQVKIWDV  152 (358)
Q Consensus        74 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  152 (358)
                      +++|.|||..+.+.+......+.                 ......-|. ..+.++.++|+++.++++...++.|.+||+
T Consensus       247 ~~~v~v~D~~t~~~~~~i~~~g~-----------------~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~  309 (543)
T 1nir_A          247 PPQFAIMDGETLEPKQIVSTRGM-----------------TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY  309 (543)
T ss_dssp             SSEEEEEETTTCCEEEEEECCEE-----------------CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred             CCeEEEEeccccccceeecccCc-----------------ccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEe
Confidence            89999999987655443221100                 000000133 379999999987888888889999999999


Q ss_pred             CCCceee--eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee----ecCCeeeEEEcCCCCCeEEE
Q 018293          153 AAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----VAADVESLAWDPHAEHSFVV  226 (358)
Q Consensus       153 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~  226 (358)
                      .+.+.+.  .+. +...+..+.|+|++..+++++..+++|.+||+.+++.......    |......+ ++|+++..+++
T Consensus       310 ~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s  387 (543)
T 1nir_A          310 KDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWST  387 (543)
T ss_dssp             TTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEE
T ss_pred             cCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEe
Confidence            8876544  443 5667889999999933444556689999999998876543332    32222222 46765666777


Q ss_pred             Ee-cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe-------CCCcEEEEecCCCCce-e
Q 018293          227 SL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-------TDKMVKLWDLSNNQPS-C  297 (358)
Q Consensus       227 ~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~-~  297 (358)
                      +. .|++|.+||+.+....  ....+.+..+..|...+..++++|++ ++|++++       .+++|.+||+.+.+.. .
T Consensus       388 ~~~~d~~V~v~d~~~~~~~--~~~~~~v~~l~~~g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~  464 (543)
T 1nir_A          388 SHLGDGSISLIGTDPKNHP--QYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ  464 (543)
T ss_dssp             EBSSSSEEEEEECCTTTCT--TTBTSEEEEEECSCSCCCCEECCTTC-CEEEECCTTCSSHHHHTCEEEEETTCTTSCCE
T ss_pred             ccCCCceEEEEEeCCCCCc--hhcCeEEEEEEcCCCCceEEEcCCCC-CcEEEecCCCCCcccCceEEEEECCCCCCCeE
Confidence            65 5899999999872110  01127788899998888999999998 7888876       2679999999998743 1


Q ss_pred             eEe------cCCCCceeEEEEEcCCCCeEEEEE----ccCCeEEEEEccCCCccccc
Q 018293          298 IAS------RNPKAGAVFSVAFSEDSPFVLAIG----GSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       298 ~~~------~~~~~~~v~~~~~~~~~~~~l~~~----~~dg~i~vw~~~~~~~~~~~  344 (358)
                      ...      +..+...+..+.|+|+|++++++.    +.|+.|.|||..+++++...
T Consensus       465 ~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i  521 (543)
T 1nir_A          465 VLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV  521 (543)
T ss_dssp             EECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred             EeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEee
Confidence            211      134567899999999999866653    24799999999999877553

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=5.8e-26  Score=191.65  Aligned_cols=283  Identities=10%  Similarity=0.126  Sum_probs=178.1

Q ss_pred             CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC-CeEEEEEcc-
Q 018293            6 NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-PAIEIWDLD-   83 (358)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g~i~vw~~~-   83 (358)
                      .++.++++...+  +  .+++|+.....  .+...........+.++.|       +|+|++|++++.+ +.|.+|+++ 
T Consensus         3 ~~~~l~~~~~~~--~--~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------spdg~~l~~~~~~~~~v~~~~~~~   69 (343)
T 1ri6_A            3 LKQTVYIASPES--Q--QIHVWNLNHEG--ALTLTQVVDVPGQVQPMVV-------SPDKRYLYVGVRPEFRVLAYRIAP   69 (343)
T ss_dssp             CEEEEEEEEGGG--T--EEEEEEECTTS--CEEEEEEEECSSCCCCEEE-------CTTSSEEEEEETTTTEEEEEEECT
T ss_pred             ceEEEEEeCCCC--C--eEEEEEECCCC--cEEEeeeEecCCCCceEEE-------CCCCCEEEEeecCCCeEEEEEecC
Confidence            345555553332  2  66666653221  1111112223334445544       8999988888776 999999997 


Q ss_pred             -cccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE-cCCeEEEEECC---CCcee
Q 018293           84 -VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWDVA---AGKCN  158 (358)
Q Consensus        84 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~iwd~~---~~~~~  158 (358)
                       ++...                         ....+..+ ..+..++|+|++ +++++++ .++.|.+||+.   ..+..
T Consensus        70 ~~~~~~-------------------------~~~~~~~~-~~~~~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~~~~  122 (343)
T 1ri6_A           70 DDGALT-------------------------FAAESALP-GSLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPVGVV  122 (343)
T ss_dssp             TTCCEE-------------------------EEEEEECS-SCCSEEEECTTS-SEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred             CCCcee-------------------------eccccccC-CCCcEEEEcCCC-CEEEEEecCCCeEEEEECCCCcccccc
Confidence             22111                         11111122 278899999995 5555554 58999999994   34455


Q ss_pred             eeecccccceeeEEEcCCCCcEEEEEe-CCCcEEEEEccc-CCCccc-----eeeecCCeeeEEEcCCCCCeEEEEecCC
Q 018293          159 LTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARI-STHSGF-----KWAVAADVESLAWDPHAEHSFVVSLEDG  231 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~dg  231 (358)
                      ..+..+ ..+.+++|+|++ +.+++++ .++.|.+||+.+ ++....     .......+..++|+|++..+++++..++
T Consensus       123 ~~~~~~-~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~  200 (343)
T 1ri6_A          123 DVVEGL-DGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS  200 (343)
T ss_dssp             EEECCC-TTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             ccccCC-CCceEEEECCCC-CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCC
Confidence            555533 458899999999 6566665 899999999987 432211     1112346788999997664555666899


Q ss_pred             eEEEEEcccCCCCCCCCCCCccEEEee---c---CCceeEEEecCCCCcEEEEEeCCCcEEEEecC--CCCceeeEecCC
Q 018293          232 TIKGFDIRTAKSDPDSTSQQSSFTLHA---H---DKAVCTISYNPLVPNLLATGSTDKMVKLWDLS--NNQPSCIASRNP  303 (358)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~~~~~---~---~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~  303 (358)
                      .|.+||+......     .........   .   ...+..++|+|++..+++++..++.|.+||+.  ++....+.....
T Consensus       201 ~i~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~  275 (343)
T 1ri6_A          201 SVDVWELKDPHGN-----IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT  275 (343)
T ss_dssp             EEEEEESSCTTSC-----CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred             EEEEEEecCCCCc-----EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC
Confidence            9999999642110     011222221   1   23566899999984344456679999999998  333333444444


Q ss_pred             CCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          304 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       304 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      +.. +..++|+|+|+++++++..++.|.+|++.
T Consensus       276 ~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          276 ETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             SSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            433 88899999999756555578999999654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=4.5e-26  Score=197.01  Aligned_cols=230  Identities=12%  Similarity=0.102  Sum_probs=169.7

Q ss_pred             CceEEecCCC------CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           65 GNFMAVGSME------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        65 ~~~l~~g~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      +..++.++.+      +.|++||++... .                           ..+.+|...|.+++|+|+ ++.|
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~---------------------------~~l~~~~~~v~~~~~Spd-g~~l  193 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYN-Q---------------------------FVVHRSPQPLMSPAWSPD-GSKL  193 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCS-C---------------------------EEEEEESSCEEEEEECTT-SSEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCC-C---------------------------EEEeCCCCcceeeEEcCC-CCEE
Confidence            5566665544      799999986321 1                           233458889999999999 6688


Q ss_pred             EEEEcCC---eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEE-EEeCCCc--EEEEEcccCCCccceeeecCCee
Q 018293          139 ASASADK---QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILL-SGSFDRS--VVMKDARISTHSGFKWAVAADVE  212 (358)
Q Consensus       139 ~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~i~  212 (358)
                      ++++.++   .|++||+.+++.. .+..|...+.+++|+|++ +.|+ +++.++.  |++||+.+++.. ....+...+.
T Consensus       194 a~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~  270 (415)
T 2hqs_A          194 AYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNT  270 (415)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEE
T ss_pred             EEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCC-CEEEEEEecCCCceEEEEECCCCCEE-eCcCCCCccc
Confidence            8888875   9999999998765 456678889999999999 5555 7776665  999999876653 3445677899


Q ss_pred             eEEEcCCCCCeEEEEec-CC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC---CcEE
Q 018293          213 SLAWDPHAEHSFVVSLE-DG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD---KMVK  286 (358)
Q Consensus       213 ~~~~~~~~~~~~~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d---g~i~  286 (358)
                      +++|+|++. .++.++. ++  .|.+||+.++         . ...+..+...+.+++|+|+| ++|++++.+   ..|+
T Consensus       271 ~~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~---------~-~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~  338 (415)
T 2hqs_A          271 EPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGG---------A-PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIA  338 (415)
T ss_dssp             EEEECTTSS-EEEEEECTTSSCEEEEEETTSS---------C-CEECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEE
T ss_pred             ceEECCCCC-EEEEEECCCCCcEEEEEECCCC---------C-EEEEecCCCcccCeEECCCC-CEEEEEECcCCceEEE
Confidence            999999765 5555554 55  6777788765         2 33445566788999999999 677766653   5799


Q ss_pred             EEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC---eEEEEEccCCCccccc
Q 018293          287 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG---KLEIWDTLSDAGISNR  344 (358)
Q Consensus       287 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~vw~~~~~~~~~~~  344 (358)
                      +||+.+++.   ..+..+. .+.+++|+|+|++ |++++.++   .|++||+.. ....++
T Consensus       339 ~~d~~~~~~---~~l~~~~-~~~~~~~spdg~~-l~~~s~~~~~~~l~~~d~~g-~~~~~l  393 (415)
T 2hqs_A          339 KQDLATGGV---QVLSSTF-LDETPSLAPNGTM-VIYSSSQGMGSVLNLVSTDG-RFKARL  393 (415)
T ss_dssp             EEETTTCCE---EECCCSS-SCEEEEECTTSSE-EEEEEEETTEEEEEEEETTS-CCEEEC
T ss_pred             EEECCCCCE---EEecCCC-CcCCeEEcCCCCE-EEEEEcCCCccEEEEEECCC-CcEEEe
Confidence            999998873   3444443 7999999999996 55566555   799999874 334433

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.96  E-value=9.3e-26  Score=189.61  Aligned_cols=282  Identities=8%  Similarity=-0.004  Sum_probs=188.5

Q ss_pred             ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC-CCCeEEEEE
Q 018293            3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS-MEPAIEIWD   81 (358)
Q Consensus         3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~vw~   81 (358)
                      |.++++.++++...+.    .+.+|+...++.......   . ...+ ++       +|+|+|+++++++ .++.|.+||
T Consensus         5 ~~~~~~~~~v~~~~~~----~v~~~d~~~~~~~~~~~~---~-~~~~-~~-------~~s~dg~~l~~~~~~~~~i~~~d   68 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLR----RISFFSTDTLEILNQITL---G-YDFV-DT-------AITSDCSNVVVTSDFCQTLVQIE   68 (331)
T ss_dssp             --CCCCEEEEEEGGGT----EEEEEETTTCCEEEEEEC---C-CCEE-EE-------EECSSSCEEEEEESTTCEEEEEE
T ss_pred             EcCCCCEEEEEecCCC----eEEEEeCcccceeeeEEc---c-CCcc-eE-------EEcCCCCEEEEEeCCCCeEEEEE
Confidence            5666666555544332    888888876522111111   1 1112 33       4489999666555 489999999


Q ss_pred             cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCC---eEEEEECCCCcee
Q 018293           82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK---QVKIWDVAAGKCN  158 (358)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~  158 (358)
                      ..+++..                          ...+..+..+..+++|+|+ +++++++..++   .|.+||+.+++.+
T Consensus        69 ~~~~~~~--------------------------~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~v~d~~~~~~~  121 (331)
T 3u4y_A           69 TQLEPPK--------------------------VVAIQEGQSSMADVDITPD-DQFAVTVTGLNHPFNMQSYSFLKNKFI  121 (331)
T ss_dssp             CSSSSCE--------------------------EEEEEECSSCCCCEEECTT-SSEEEECCCSSSSCEEEEEETTTTEEE
T ss_pred             CCCCcee--------------------------EEecccCCCCccceEECCC-CCEEEEecCCCCcccEEEEECCCCCeE
Confidence            9765431                          1112234455555999999 55777555553   8999999999888


Q ss_pred             eeecccccceeeEEEcCCCCcEEEEEeCCCc-EEEEEcccCCCcc----ceeeecCCeeeEEEcCCCCCeEEEEecCCeE
Q 018293          159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRS-VVMKDARISTHSG----FKWAVAADVESLAWDPHAEHSFVVSLEDGTI  233 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i  233 (358)
                      ..+..+ ....+++|+|++..++++...++. +.+|++.......    ........+..++|+|++..+++++..++.|
T Consensus       122 ~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  200 (331)
T 3u4y_A          122 STIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSI  200 (331)
T ss_dssp             EEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeE
Confidence            877643 456899999999556666667788 9999987544321    1123345688999999766566666678999


Q ss_pred             EEEEcccCCCCCCCCCCCc---cEEEeecCCceeEEEecCCCCcEEE-EEeCCCcEEEEecCCCCceeeEecCCC----C
Q 018293          234 KGFDIRTAKSDPDSTSQQS---SFTLHAHDKAVCTISYNPLVPNLLA-TGSTDKMVKLWDLSNNQPSCIASRNPK----A  305 (358)
Q Consensus       234 ~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~----~  305 (358)
                      .+||+.++         ..   +..+.. ...+..++|+|++ ++++ +...++.|.+||+.+++...+..+..+    .
T Consensus       201 ~v~d~~~~---------~~~~~~~~~~~-~~~~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  269 (331)
T 3u4y_A          201 GILETQNP---------ENITLLNAVGT-NNLPGTIVVSRDG-STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDP  269 (331)
T ss_dssp             EEEECSST---------TSCEEEEEEEC-SSCCCCEEECTTS-SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCC
T ss_pred             EEEECCCC---------cccceeeeccC-CCCCceEEECCCC-CEEEEEEcCCCEEEEEECCCCceeeecccccccccCC
Confidence            99999876         43   445543 4667899999999 6554 444578899999998875333322211    2


Q ss_pred             ce---eEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          306 GA---VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       306 ~~---v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      ..   ...++|+|+++++++++..++.|.+||+.+..
T Consensus       270 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          270 RPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             CCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            22   24589999999877777778899999997644

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=7.9e-26  Score=210.36  Aligned_cols=294  Identities=9%  Similarity=0.084  Sum_probs=200.9

Q ss_pred             CcccCCCcEEEEEEe-cCCCceEEEEEEeccCCCCCceEeeceeecC-------Cccc----cee--eecCCccccCCCc
Q 018293            1 MTINPNDAVIVCARN-EDDVSHLEVYILEESDGGDPNLYVHHHIIIP-------AFPL----CMA--WLDCPLKDREKGN   66 (358)
Q Consensus         1 l~~~p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~--~~~~~~~~s~~~~   66 (358)
                      ++|+|+|+.|+++.. +++.....+++|+...+....+...+.....       ....    .+.  .-..+++|||||+
T Consensus        42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~  121 (741)
T 2ecf_A           42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ  121 (741)
T ss_dssp             EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSS
T ss_pred             ceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC
Confidence            368999999999976 4433456899999877533333322211100       0000    000  0012456699999


Q ss_pred             eEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCe
Q 018293           67 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  146 (358)
Q Consensus        67 ~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~  146 (358)
                      +|++++. +.|++||+.++...                         ....+..|...+.+++|+|+ +++|+.++ ++.
T Consensus       122 ~l~~~~~-~~i~~~d~~~~~~~-------------------------~~~~l~~~~~~~~~~~~SPD-G~~la~~~-~~~  173 (741)
T 2ecf_A          122 RLLFPLG-GELYLYDLKQEGKA-------------------------AVRQLTHGEGFATDAKLSPK-GGFVSFIR-GRN  173 (741)
T ss_dssp             EEEEEET-TEEEEEESSSCSTT-------------------------SCCBCCCSSSCEEEEEECTT-SSEEEEEE-TTE
T ss_pred             EEEEEeC-CcEEEEECCCCCcc-------------------------eEEEcccCCcccccccCCCC-CCEEEEEe-CCc
Confidence            9999886 99999999764200                         01123457788999999999 56787776 569


Q ss_pred             EEEEECCCCceeeeecccccc----------------eeeEEEcCCCCcEEEEEeCCC----------------------
Q 018293          147 VKIWDVAAGKCNLTLEHHTDK----------------VQAVAWNHHSPQILLSGSFDR----------------------  188 (358)
Q Consensus       147 v~iwd~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~~l~~~~~dg----------------------  188 (358)
                      |.+||+.+++.......+...                +.++.|+|+| +.|++++.|+                      
T Consensus       174 i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~  252 (741)
T 2ecf_A          174 LWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQR  252 (741)
T ss_dssp             EEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEE
T ss_pred             EEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEee
Confidence            999999988766554433332                4789999999 7777776655                      


Q ss_pred             -----------cEEEEEccc-CCCcccee--eecCCeeeEEEcCCCCCeEEEEec-----CCeEEEEEcccCCCCCCCCC
Q 018293          189 -----------SVVMKDARI-STHSGFKW--AVAADVESLAWDPHAEHSFVVSLE-----DGTIKGFDIRTAKSDPDSTS  249 (358)
Q Consensus       189 -----------~i~i~d~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~-----dg~i~i~d~~~~~~~~~~~~  249 (358)
                                 .|.+||+.+ ++......  .+...+..++| |++. .++++..     +..|++||+.++        
T Consensus       253 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~-~l~~~~~~~~~~~~~i~~~d~~~g--------  322 (741)
T 2ecf_A          253 YPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQ-HLSFQRQSRDQKKLDLVEVTLASN--------  322 (741)
T ss_dssp             CCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETT-EEEEEEEETTSSEEEEEEEETTTC--------
T ss_pred             cCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCC-EEEEEEecccCCeEEEEEEECCCC--------
Confidence                       788899987 66443222  25567899999 9765 5554432     568999999876        


Q ss_pred             CCccEEEeecCC----ceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEE-EEcCCCCeEEEEE
Q 018293          250 QQSSFTLHAHDK----AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV-AFSEDSPFVLAIG  324 (358)
Q Consensus       250 ~~~~~~~~~~~~----~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~~~  324 (358)
                       .....+..+..    .+..++|+|+| +++++++.||.+++|.+.....  ...+..+...+..+ .|+|+++.+++++
T Consensus       323 -~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~~--~~~l~~~~~~v~~~~~~s~dg~~l~~~~  398 (741)
T 2ecf_A          323 -QQRVLAHETSPTWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKGK--AAALTHGNWSVDELLAVDEKAGLAYFRA  398 (741)
T ss_dssp             -CEEEEEEEECSSCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSSSC--EEESCCSSSCEEEEEEEETTTTEEEEEE
T ss_pred             -ceEEEEEcCCCCcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCCCC--eeeeeecceEEEeEeEEeCCCCEEEEEE
Confidence             44444444433    45689999999 6889999999888887763322  45566777778887 5999999766777


Q ss_pred             ccCC--eEEEEEccC
Q 018293          325 GSKG--KLEIWDTLS  337 (358)
Q Consensus       325 ~~dg--~i~vw~~~~  337 (358)
                      +.++  .+++|++..
T Consensus       399 ~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          399 GIESARESQIYAVPL  413 (741)
T ss_dssp             CSSCTTCBEEEEEET
T ss_pred             eCCCCceEEEEEEEc
Confidence            7776  899999874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=1.4e-24  Score=187.79  Aligned_cols=253  Identities=15%  Similarity=0.061  Sum_probs=179.3

Q ss_pred             CcEEEEEEecC-CCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCC---eEEEEEc
Q 018293            7 DAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP---AIEIWDL   82 (358)
Q Consensus         7 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~vw~~   82 (358)
                      +..++.+..++ +...-.+++|+.... ....+..|    ...+.++.|       ||+|++|++++.++   .|++||+
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~----~~~v~~~~~-------Spdg~~la~~s~~~~~~~i~~~d~  210 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRS----PQPLMSPAW-------SPDGSKLAYVTFESGRSALVIQTL  210 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEE----SSCEEEEEE-------CTTSSEEEEEECTTSSCEEEEEET
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCC----CCcceeeEE-------cCCCCEEEEEEecCCCcEEEEEEC
Confidence            55555554442 111257888887653 23333333    223334544       99999999998875   9999999


Q ss_pred             ccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCe--EEEEECCCCceeee
Q 018293           83 DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ--VKIWDVAAGKCNLT  160 (358)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~--v~iwd~~~~~~~~~  160 (358)
                      .+++..                            .+..|...+.+++|+|++..++++++.++.  |.+||+.+++. ..
T Consensus       211 ~tg~~~----------------------------~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~  261 (415)
T 2hqs_A          211 ANGAVR----------------------------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQ  261 (415)
T ss_dssp             TTCCEE----------------------------EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EE
T ss_pred             CCCcEE----------------------------EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-Ee
Confidence            764321                            223577889999999995434447776655  99999998875 56


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeC-CC--cEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecC---CeEE
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSF-DR--SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED---GTIK  234 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d---g~i~  234 (358)
                      +..|...+.+++|+|++ +.|++++. ++  .|.+||+.+++... ...+...+.+++|+|++. ++++++.+   ..|+
T Consensus       262 l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~spdG~-~l~~~~~~~g~~~i~  338 (415)
T 2hqs_A          262 VTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIA  338 (415)
T ss_dssp             CCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEEEEECTTSS-EEEEEEECSSCEEEE
T ss_pred             CcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEEE-EecCCCcccCeEECCCCC-EEEEEECcCCceEEE
Confidence            66788899999999999 66766665 55  57777887765432 334556788999999765 56655543   5899


Q ss_pred             EEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC---cEEEEecCCCCceeeEecCCCCceeEEE
Q 018293          235 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSV  311 (358)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~v~~~  311 (358)
                      +||+.++         .. ..+..+. .+.+++|+|++ ++|++++.++   .|++||+..+.   ...+..|.+.|.++
T Consensus       339 ~~d~~~~---------~~-~~l~~~~-~~~~~~~spdg-~~l~~~s~~~~~~~l~~~d~~g~~---~~~l~~~~~~v~~~  403 (415)
T 2hqs_A          339 KQDLATG---------GV-QVLSSTF-LDETPSLAPNG-TMVIYSSSQGMGSVLNLVSTDGRF---KARLPATDGQVKFP  403 (415)
T ss_dssp             EEETTTC---------CE-EECCCSS-SCEEEEECTTS-SEEEEEEEETTEEEEEEEETTSCC---EEECCCSSSEEEEE
T ss_pred             EEECCCC---------CE-EEecCCC-CcCCeEEcCCC-CEEEEEEcCCCccEEEEEECCCCc---EEEeeCCCCCCcCC
Confidence            9999875         32 3444454 78999999999 7777777666   79999997654   56778899999999


Q ss_pred             EEcCCCC
Q 018293          312 AFSEDSP  318 (358)
Q Consensus       312 ~~~~~~~  318 (358)
                      +|+|...
T Consensus       404 ~~~~~~~  410 (415)
T 2hqs_A          404 AWSPYLH  410 (415)
T ss_dssp             EECCCCC
T ss_pred             ccccccc
Confidence            9999754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.94  E-value=5.9e-24  Score=179.86  Aligned_cols=289  Identities=10%  Similarity=0.088  Sum_probs=181.4

Q ss_pred             EEEEEEec-CCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCC---CCeEEEEEccc
Q 018293            9 VIVCARNE-DDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM---EPAIEIWDLDV   84 (358)
Q Consensus         9 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~vw~~~~   84 (358)
                      .+++|... +....+.+|.++...+   .+...........|..+       +|+|+|+ |++++.   ++.|++|++.+
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~tg---~~~~~~~~~~~~~p~~~-------a~spdg~-l~~~~~~~~~~~v~~~~~~~   72 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTAK---TLTNDGLLAATQNPTYL-------ALSAKDC-LYSVDKEDDEGGIAAWQIDG   72 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTT---EEEEEEEEEECSCCCCE-------EECTTCE-EEEEEEETTEEEEEEEEEET
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCCC---eEEEeeeeeccCCcceE-------EEccCCe-EEEEEecCCCceEEEEEecC
Confidence            34555332 2235677778877654   22221111122333333       4499999 554443   68999999964


Q ss_pred             ccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE-cCCeEEEEECCC-C--ceeee
Q 018293           85 IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWDVAA-G--KCNLT  160 (358)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~-~--~~~~~  160 (358)
                      +...                         ....+..+...+..++|+|+ +++|++++ .++.|.+|++.. +  +.+..
T Consensus        73 g~~~-------------------------~~~~~~~~~~~p~~~a~spd-g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~  126 (347)
T 3hfq_A           73 QTAH-------------------------KLNTVVAPGTPPAYVAVDEA-RQLVYSANYHKGTAEVMKIAADGALTLTDT  126 (347)
T ss_dssp             TEEE-------------------------EEEEEEEESCCCSEEEEETT-TTEEEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred             CcEE-------------------------EeeeeecCCCCCEEEEECCC-CCEEEEEeCCCCEEEEEEeCCCCCeeecce
Confidence            3211                         11122235677889999999 55666666 789999999963 3  22333


Q ss_pred             ecc---------cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee----eecCCeeeEEEcCCCCCeEEEE
Q 018293          161 LEH---------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----AVAADVESLAWDPHAEHSFVVS  227 (358)
Q Consensus       161 ~~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~  227 (358)
                      +..         ....+.+++|+|++ +++++...++.|.+||+..........    .....+..++|+|++..+++++
T Consensus       127 ~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~  205 (347)
T 3hfq_A          127 VQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAG  205 (347)
T ss_dssp             EECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             eecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEe
Confidence            321         12247889999999 577777778999999998322221111    1223577899999766456667


Q ss_pred             ecCCeEEEEEcccCCCCCCCCCCCccEEEeecC------CceeEEEecCCCCcEEEEEeCCCcEEEEecCC-CCceeeEe
Q 018293          228 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSN-NQPSCIAS  300 (358)
Q Consensus       228 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~  300 (358)
                      ..++.+.+|++......     ......+....      ..+..++|+|+|..++++...++.|.+|++.. +....+..
T Consensus       206 ~~~~~v~v~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~  280 (347)
T 3hfq_A          206 ELSSQIASLKYDTQTGA-----FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ  280 (347)
T ss_dssp             TTTTEEEEEEEETTTTE-----EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE
T ss_pred             CCCCEEEEEEecCCCCc-----eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE
Confidence            78899999999852110     01122222222      34788999999933446667789999999973 23334445


Q ss_pred             cCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc--cCCCc
Q 018293          301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT--LSDAG  340 (358)
Q Consensus       301 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~--~~~~~  340 (358)
                      ...+...+..++|+|+|+++++++..++.|.+|++  .+++.
T Consensus       281 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          281 ISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             EECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence            55555668899999999976665556699999955  45553

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=2.1e-24  Score=199.68  Aligned_cols=291  Identities=13%  Similarity=0.078  Sum_probs=191.6

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|+|+ +.++++ .++     .+++|+...+....+..+     ...+.+       ++|||||++|+++ .++.|++|
T Consensus        87 ~~~spd-~~~~~~-~~~-----~i~~~d~~~~~~~~l~~~-----~~~~~~-------~~~SpdG~~la~~-~~~~i~v~  146 (706)
T 2z3z_A           87 TLDAGR-GLVVLF-TQG-----GLVGFDMLARKVTYLFDT-----NEETAS-------LDFSPVGDRVAYV-RNHNLYIA  146 (706)
T ss_dssp             EEETTT-TEEEEE-ETT-----EEEEEETTTTEEEEEECC-----TTCCTT-------CEECTTSSEEEEE-ETTEEEEE
T ss_pred             EEECCC-CeEEEE-ECC-----EEEEEECCCCceEEccCC-----cccccC-------CcCCCCCCEEEEE-ECCeEEEE
Confidence            368999 666666 344     889999876421111111     222233       4459999999995 68999999


Q ss_pred             Eccc-----ccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE-------------
Q 018293           81 DLDV-----IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-------------  142 (358)
Q Consensus        81 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-------------  142 (358)
                      ++.+     ++....   ......         ....... ....+...+.++.|+|+ +++|++++             
T Consensus       147 ~~~~~~~~~g~~~~~---~~~~~~---------~~~~g~~-~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~  212 (706)
T 2z3z_A          147 RGGKLGEGMSRAIAV---TIDGTE---------TLVYGQA-VHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVD  212 (706)
T ss_dssp             ECBCTTSCCCCCEES---CSCCBT---------TEEESSC-CGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEE
T ss_pred             ecCcccccCCCcEEe---ccCCCC---------CeEcccc-hhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeec
Confidence            9986     433211   000000         0000000 11122334689999999 56888877             


Q ss_pred             --------------------cCCeEEEEECCCCceeeeec--ccccceeeEEEcCCCCcEEEEEeCCC-----cEEEEEc
Q 018293          143 --------------------ADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDA  195 (358)
Q Consensus       143 --------------------~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~  195 (358)
                                          .+..|.+||+.+++......  .+...+.+++|+|++ +.+++++.++     .|.+||+
T Consensus       213 ~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~  291 (706)
T 2z3z_A          213 YHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDA  291 (706)
T ss_dssp             CCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEET
T ss_pred             cCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEEC
Confidence                                34679999999887654432  466789999999999 7777776665     8999999


Q ss_pred             ccCCCccceeee--cC---CeeeEEEcC--CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeE-EE
Q 018293          196 RISTHSGFKWAV--AA---DVESLAWDP--HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT-IS  267 (358)
Q Consensus       196 ~~~~~~~~~~~~--~~---~i~~~~~~~--~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~-i~  267 (358)
                      .+++........  ..   .+..++|+|  ++. +++++..+|.+++|++...        ......+..+...+.. ++
T Consensus       292 ~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~--------~~~~~~l~~~~~~v~~~~~  362 (706)
T 2z3z_A          292 ETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTT--------GRLIRQVTKGEWEVTNFAG  362 (706)
T ss_dssp             TTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETT--------SCEEEECCCSSSCEEEEEE
T ss_pred             CCCceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccCCccEEEEEECC--------CCEEEecCCCCeEEEeeeE
Confidence            887333222221  11   246789999  765 8888889999999988732        1455666677777876 79


Q ss_pred             ecCCCCcEEEEEeCCC----cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC---CeEEEEEccCCC
Q 018293          268 YNPLVPNLLATGSTDK----MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK---GKLEIWDTLSDA  339 (358)
Q Consensus       268 ~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~  339 (358)
                      |+|++..+++++..++    .|..||+.+++.   ..+. +...+.+++|+|+|++++++++.+   +.|++||+.+++
T Consensus       363 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~---~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          363 FDPKGTRLYFESTEASPLERHFYCIDIKGGKT---KDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             ECTTSSEEEEEESSSCTTCBEEEEEETTCCCC---EESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EcCCCCEEEEEecCCCCceEEEEEEEcCCCCc---eecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            9999844455555555    677777777652   2232 556789999999999755554443   569999998876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=3.3e-24  Score=181.70  Aligned_cols=280  Identities=11%  Similarity=0.040  Sum_probs=189.3

Q ss_pred             CcccCCCcEEEEEEecCC--CceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceE-EecCCCCeE
Q 018293            1 MTINPNDAVIVCARNEDD--VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAI   77 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i   77 (358)
                      ++++|+++.++++...+.  .....+++|+...+.....+     .....+..+       .|+|+|+++ +++..++.|
T Consensus        46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-----~~~~~~~~~-------~~s~dg~~l~v~~~~~~~v  113 (353)
T 3vgz_A           46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI-----HNDLKPFGA-------TINNTTQTLWFGNTVNSAV  113 (353)
T ss_dssp             EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE-----EESSCCCSE-------EEETTTTEEEEEETTTTEE
T ss_pred             eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE-----ecCCCcceE-------EECCCCCEEEEEecCCCEE
Confidence            468999999988864421  01347889988765221111     122233344       448999855 555668999


Q ss_pred             EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE--cCCeEEEEECCCC
Q 018293           78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS--ADKQVKIWDVAAG  155 (358)
Q Consensus        78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~  155 (358)
                      .+||..+++............                  ........+.+++|+|++. ++++++  .++.|.+||+.++
T Consensus       114 ~~~d~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~i~~~d~~~~  174 (353)
T 3vgz_A          114 TAIDAKTGEVKGRLVLDDRKR------------------TEEVRPLQPRELVADDATN-TVYISGIGKESVIWVVDGGNI  174 (353)
T ss_dssp             EEEETTTCCEEEEEESCCCCC------------------CSSCCCCEEEEEEEETTTT-EEEEEEESSSCEEEEEETTTT
T ss_pred             EEEeCCCCeeEEEEecCCCcc------------------ccccCCCCCceEEECCCCC-EEEEEecCCCceEEEEcCCCC
Confidence            999998765443221100000                  0000112378899999955 555554  4789999999999


Q ss_pred             ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee----ecCCeeeEEEcCCCCCeEEEEecCC
Q 018293          156 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----VAADVESLAWDPHAEHSFVVSLEDG  231 (358)
Q Consensus       156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~dg  231 (358)
                      +.+..+..+...+.+++|+|++ +.+++++.++.+.+||+.+++.......    ....+..++|+|++..++++...++
T Consensus       175 ~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  253 (353)
T 3vgz_A          175 KLKTAIQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAA  253 (353)
T ss_dssp             EEEEEECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSS
T ss_pred             ceEEEecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCC
Confidence            9888887566678899999999 7888888999999999988765543322    3445778999997665555555669


Q ss_pred             eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEE
Q 018293          232 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  311 (358)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  311 (358)
                      .|.+||..++         +....+....  ...++|+|++..++++...++.|.+||..+++...  .+.. ...+.++
T Consensus       254 ~v~~~d~~~~---------~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~--~~~~-~~~~~~~  319 (353)
T 3vgz_A          254 EVLVVDTRNG---------NILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK--TFDT-PTHPNSL  319 (353)
T ss_dssp             EEEEEETTTC---------CEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EEEC-CSEEEEE
T ss_pred             EEEEEECCCC---------cEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE--EEec-CCCCCeE
Confidence            9999999876         4455554433  25799999984455555578999999999887433  3332 3468899


Q ss_pred             EEcCCCCeEEEEEcc
Q 018293          312 AFSEDSPFVLAIGGS  326 (358)
Q Consensus       312 ~~~~~~~~~l~~~~~  326 (358)
                      +|+|+|++++++...
T Consensus       320 ~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          320 ALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EECTTSCEEEEEEEC
T ss_pred             EEcCCCCEEEEEEcc
Confidence            999999975655443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=5.8e-25  Score=181.47  Aligned_cols=255  Identities=12%  Similarity=0.067  Sum_probs=176.1

Q ss_pred             eEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEccc-ccCcCceeecCCccc
Q 018293           21 HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDV-IDEVQPHVILGGIDE   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~-~~~~~~~~~~~~~~~   99 (358)
                      .-.+++|+...+....+..+     ...+.++.|       +|+|++|++++ ++.|++||+.+ ++...          
T Consensus        21 ~~~i~~~d~~~~~~~~~~~~-----~~~v~~~~~-------spdg~~l~~~~-~~~i~~~d~~~~~~~~~----------   77 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQT-----PELFEAPNW-------SPDGKYLLLNS-EGLLYRLSLAGDPSPEK----------   77 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEE-----SSCCEEEEE-------CTTSSEEEEEE-TTEEEEEESSSCCSCEE----------
T ss_pred             ceeEEEEeCCCCceeeeccC-----CcceEeeEE-------CCCCCEEEEEc-CCeEEEEeCCCCCCceE----------
Confidence            34788888876532222222     333445555       89999999987 88999999975 43221          


Q ss_pred             ccccccccCCceeccccccCCC-cccEEEEecCCCCCcEEEEEE--cCCeEEE--EECCCCceeeeecccccceeeEEEc
Q 018293          100 EKKKKKSKKGKKSSIKYKKGSH-TDSVLGLAWNKEFRNILASAS--ADKQVKI--WDVAAGKCNLTLEHHTDKVQAVAWN  174 (358)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~--~dg~v~i--wd~~~~~~~~~~~~~~~~v~~~~~~  174 (358)
                                       ....| ...+.+++|+|+ +++|++++  .++...|  |+..+++ ...+..+ ..+..++|+
T Consensus        78 -----------------~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~s  137 (297)
T 2ojh_A           78 -----------------VDTGFATICNNDHGISPD-GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWS  137 (297)
T ss_dssp             -----------------CCCTTCCCBCSCCEECTT-SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEEC
T ss_pred             -----------------eccccccccccceEECCC-CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEEC
Confidence                             11223 467899999999 56888888  3344455  4555554 3444433 348899999


Q ss_pred             CCCCcEEEEEeCCCcEEEEEcccCC-CccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCcc
Q 018293          175 HHSPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS  253 (358)
Q Consensus       175 ~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  253 (358)
                      |++..+++++..++.+.+|++.... .......+...+.+++|+|++..+++++..++.+++|++...        ....
T Consensus       138 pdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~--------~~~~  209 (297)
T 2ojh_A          138 PDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD--------GSSV  209 (297)
T ss_dssp             TTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--------SSCE
T ss_pred             CCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCC--------CCCc
Confidence            9994444588889999999975432 223234556789999999976544444556899999998743        1455


Q ss_pred             EEEeecCCceeEEEecCCCCcEEEEEeCC-----------CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEE
Q 018293          254 FTLHAHDKAVCTISYNPLVPNLLATGSTD-----------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLA  322 (358)
Q Consensus       254 ~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  322 (358)
                      ..+..|...+.+++|+|++ ++|++++.+           +.|++||+.+++...+.....|...+.+++|+|+++++++
T Consensus       210 ~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  288 (297)
T 2ojh_A          210 ERITDSAYGDWFPHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAY  288 (297)
T ss_dssp             EECCCCSEEEEEEEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEE
T ss_pred             EEEecCCcccCCeEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEE
Confidence            6677777889999999998 777776655           5699999998876556655567778999999999997444


Q ss_pred             EEccC
Q 018293          323 IGGSK  327 (358)
Q Consensus       323 ~~~~d  327 (358)
                      ++..+
T Consensus       289 ~~~~~  293 (297)
T 2ojh_A          289 VRYFP  293 (297)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            44433

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=6.1e-24  Score=178.54  Aligned_cols=244  Identities=9%  Similarity=0.067  Sum_probs=172.2

Q ss_pred             ccCCC-ceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           61 DREKG-NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        61 ~s~~~-~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      |.+++ ..+++++.++.|++||..+++.....                           ..+...+ +++|+|++..+++
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~---------------------------~~~~~~~-~~~~s~dg~~l~~   56 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQI---------------------------TLGYDFV-DTAITSDCSNVVV   56 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEEEE---------------------------ECCCCEE-EEEECSSSCEEEE
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceeeeE---------------------------EccCCcc-eEEEcCCCCEEEE
Confidence            34554 45778888999999999865443221                           1234556 9999999543444


Q ss_pred             EEEcCCeEEEEECCCCce-eeeecccccceeeEEEcCCCCcEEEEEeCCC---cEEEEEcccCCCccceeeecCCeeeEE
Q 018293          140 SASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDR---SVVMKDARISTHSGFKWAVAADVESLA  215 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i~~~~  215 (358)
                      ++..++.|.+||+.+++. ...+..+..+..+++|+|++ ++++++..++   .|.+||+.+++... ..........++
T Consensus        57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~  134 (331)
T 3u4y_A           57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFIS-TIPIPYDAVGIA  134 (331)
T ss_dssp             EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEE-EEECCTTEEEEE
T ss_pred             EeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEE-EEECCCCccceE
Confidence            555589999999999987 77777666666669999999 7677555553   89999998876654 334456678999


Q ss_pred             EcCCCCCeEEEEecCCe-EEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293          216 WDPHAEHSFVVSLEDGT-IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       216 ~~~~~~~~~~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~  294 (358)
                      |+|++..++++...++. +.+|++.......     ...............++|+|++..+++++..++.|.+||+.+++
T Consensus       135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  209 (331)
T 3u4y_A          135 ISPNGNGLILIDRSSANTVRRFKIDADGVLF-----DTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE  209 (331)
T ss_dssp             ECTTSSCEEEEEETTTTEEEEEEECTTCCEE-----EEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred             ECCCCCEEEEEecCCCceEEEEEECCCCcEe-----ecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence            99987766667677788 9999998541100     00012223345578999999994355566678999999999887


Q ss_pred             cee-eEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          295 PSC-IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       295 ~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      ... +..+.. ...+..++|+|+|++++++...++.|.+||+.+++.
T Consensus       210 ~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          210 NITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             SCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             ccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            411 333332 356778999999997677666788999999998776

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=7.6e-24  Score=174.74  Aligned_cols=228  Identities=10%  Similarity=0.030  Sum_probs=167.6

Q ss_pred             ecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEE
Q 018293           70 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  149 (358)
Q Consensus        70 ~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i  149 (358)
                      .++.|+.|++||+.+++..                            .+..|...|.+++|+|+ +++|++++ ++.|.+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~----------------------------~~~~~~~~v~~~~~spd-g~~l~~~~-~~~i~~   66 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR----------------------------VVWQTPELFEAPNWSPD-GKYLLLNS-EGLLYR   66 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE----------------------------EEEEESSCCEEEEECTT-SSEEEEEE-TTEEEE
T ss_pred             CCCcceeEEEEeCCCCcee----------------------------eeccCCcceEeeEECCC-CCEEEEEc-CCeEEE
Confidence            4567899999999754322                            22347889999999999 56787776 789999


Q ss_pred             EECCC-Cceeeeeccc-ccceeeEEEcCCCCcEEEEEe--CCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEE
Q 018293          150 WDVAA-GKCNLTLEHH-TDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV  225 (358)
Q Consensus       150 wd~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  225 (358)
                      ||+.+ ++.......+ ...+.+++|+|++ +.+++++  .++...+|.+...............+..++|+|++..+++
T Consensus        67 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  145 (297)
T 2ojh_A           67 LSLAGDPSPEKVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTY  145 (297)
T ss_dssp             EESSSCCSCEECCCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEE
T ss_pred             EeCCCCCCceEeccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEE
Confidence            99999 8777666555 3678999999999 7888887  4456666665432222223334445888999997765555


Q ss_pred             EEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe-CCCcEEEEecC-CCCceeeEecCC
Q 018293          226 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLS-NNQPSCIASRNP  303 (358)
Q Consensus       226 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~  303 (358)
                      ++..++.+++|+++...        .....+..+...+.+++|+|++ .+|+.++ .++.+++|++. ...  ....+..
T Consensus       146 ~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~--~~~~~~~  214 (297)
T 2ojh_A          146 CGIRDQVFDIYSMDIDS--------GVETRLTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGS--SVERITD  214 (297)
T ss_dssp             EEEETTEEEEEEEETTT--------CCEEECCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSS--CEEECCC
T ss_pred             EECCCCceEEEEEECCC--------CcceEcccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCC--CcEEEec
Confidence            88899999999986431        3345666777889999999998 6555544 68999999986 333  3456677


Q ss_pred             CCceeEEEEEcCCCCeEEEEEccC-----------CeEEEEEccCCCc
Q 018293          304 KAGAVFSVAFSEDSPFVLAIGGSK-----------GKLEIWDTLSDAG  340 (358)
Q Consensus       304 ~~~~v~~~~~~~~~~~~l~~~~~d-----------g~i~vw~~~~~~~  340 (358)
                      +...+..++|+|++++ |++++.+           +.|++||+.+++.
T Consensus       215 ~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          215 SAYGDWFPHPSPSGDK-VVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             CSEEEEEEEECTTSSE-EEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             CCcccCCeEECCCCCE-EEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            7788999999999996 5555544           5699999988764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=2.4e-24  Score=199.83  Aligned_cols=286  Identities=9%  Similarity=0.022  Sum_probs=185.8

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC------
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME------   74 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d------   74 (358)
                      ++|+|+|++++. ..++     .+++|+...+....+..++... ...+.       +++|||||++|++++.+      
T Consensus        22 ~~~spdg~~~~~-~~dg-----~i~~~d~~~g~~~~~~~~~~~~-~~~v~-------~~~~SpDg~~l~~~~~~~~~~~~   87 (723)
T 1xfd_A           22 AKWISDTEFIYR-EQKG-----TVRLWNVETNTSTVLIEGKKIE-SLRAI-------RYEISPDREYALFSYNVEPIYQH   87 (723)
T ss_dssp             CCBSSSSCBCCC-CSSS-----CEEEBCGGGCCCEEEECTTTTT-TTTCS-------EEEECTTSSEEEEEESCCCCSSS
T ss_pred             cEEcCCCcEEEE-eCCC-----CEEEEECCCCcEEEEecccccc-ccccc-------eEEECCCCCEEEEEecCccceee
Confidence            478999996654 3443     7888888776443333333210 00122       34559999999998764      


Q ss_pred             ---CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEE
Q 018293           75 ---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  151 (358)
Q Consensus        75 ---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd  151 (358)
                         +.|++||+.+++...                         .....+|...+..++|+|+ ++.|+.++. +.|++||
T Consensus        88 ~~~~~i~~~d~~~~~~~~-------------------------l~~~~~~~~~~~~~~~SPd-G~~la~~~~-~~i~~~~  140 (723)
T 1xfd_A           88 SYTGYYVLSKIPHGDPQS-------------------------LDPPEVSNAKLQYAGWGPK-GQQLIFIFE-NNIYYCA  140 (723)
T ss_dssp             CCCSEEEEEESSSCCCEE-------------------------CCCTTCCSCCCSBCCBCSS-TTCEEEEET-TEEEEES
T ss_pred             cceeeEEEEECCCCceEe-------------------------ccCCccccccccccEECCC-CCEEEEEEC-CeEEEEE
Confidence               788999998654310                         1112346666899999999 567777765 7999999


Q ss_pred             CCCCceeeeecccccce------------------eeEEEcCCCCcEEEEEeCCC-------------------------
Q 018293          152 VAAGKCNLTLEHHTDKV------------------QAVAWNHHSPQILLSGSFDR-------------------------  188 (358)
Q Consensus       152 ~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~~l~~~~~dg-------------------------  188 (358)
                      +.+++.......+...+                  .+++|+|+| +.|++++.++                         
T Consensus       141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (723)
T 1xfd_A          141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (723)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence            99887766555443333                  789999999 7777776442                         


Q ss_pred             ---------cEEEEEcccCCCccceeee------cCCeeeEEEcCCCCCeEEEEec----CCeEEEEEcccCCCCCCCCC
Q 018293          189 ---------SVVMKDARISTHSGFKWAV------AADVESLAWDPHAEHSFVVSLE----DGTIKGFDIRTAKSDPDSTS  249 (358)
Q Consensus       189 ---------~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~----dg~i~i~d~~~~~~~~~~~~  249 (358)
                               .|++||+.+++.......+      ...+..++|+|++. ++++...    +..|++||+.++        
T Consensus       220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~g--------  290 (723)
T 1xfd_A          220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDATTG--------  290 (723)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEETTTC--------
T ss_pred             CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEEEeCCCC--------
Confidence                     7999999887643322222      45688999999765 6655543    357999999876        


Q ss_pred             CCccEEEee-cCCce----eEEEecCCCCcEEEE-EeCCC------cEEEEe-cCCCCceeeEecCCCCceeEE-EEEcC
Q 018293          250 QQSSFTLHA-HDKAV----CTISYNPLVPNLLAT-GSTDK------MVKLWD-LSNNQPSCIASRNPKAGAVFS-VAFSE  315 (358)
Q Consensus       250 ~~~~~~~~~-~~~~i----~~i~~~~~~~~~l~~-~~~dg------~i~i~d-~~~~~~~~~~~~~~~~~~v~~-~~~~~  315 (358)
                       +....+.. +...+    ..++|+|+|..++++ +..++      .|.+|| ..+++..+...+..+...+.. ++|+|
T Consensus       291 -~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp  369 (723)
T 1xfd_A          291 -VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE  369 (723)
T ss_dssp             -CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET
T ss_pred             -cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC
Confidence             43333333 33333    378999999555554 55677      577777 344431012233333334444 69999


Q ss_pred             CCCeEEEEEccC--CeEEEEEccCC
Q 018293          316 DSPFVLAIGGSK--GKLEIWDTLSD  338 (358)
Q Consensus       316 ~~~~~l~~~~~d--g~i~vw~~~~~  338 (358)
                      +|+.+++++..+  +.+++|++...
T Consensus       370 dg~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          370 KGNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             TTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             CCCEEEEEEcCCCCcceEEEEEeCC
Confidence            999755555555  88999998653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=4e-24  Score=181.17  Aligned_cols=242  Identities=12%  Similarity=0.082  Sum_probs=177.7

Q ss_pred             ccccCCCceEEecCC-------CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecC
Q 018293           59 LKDREKGNFMAVGSM-------EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN  131 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  131 (358)
                      ++|+|+++++++++.       ++.|.+||..+++......                            ....+..++|+
T Consensus        46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~----------------------------~~~~~~~~~~s   97 (353)
T 3vgz_A           46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH----------------------------NDLKPFGATIN   97 (353)
T ss_dssp             EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE----------------------------ESSCCCSEEEE
T ss_pred             eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe----------------------------cCCCcceEEEC
Confidence            445899998887764       5689999998655433211                            12346788999


Q ss_pred             CCCCcEEEEEEcCCeEEEEECCCCceeeeeccccc---------ceeeEEEcCCCCcEEEEEe--CCCcEEEEEcccCCC
Q 018293          132 KEFRNILASASADKQVKIWDVAAGKCNLTLEHHTD---------KVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTH  200 (358)
Q Consensus       132 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~  200 (358)
                      |++..++++...++.|.+||.++++.+..+..+..         .+.+++|+|++ +.+++++  .++.|.+||..+.+.
T Consensus        98 ~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~~d~~~~~~  176 (353)
T 3vgz_A           98 NTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWVVDGGNIKL  176 (353)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEEEETTTTEE
T ss_pred             CCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEEEcCCCCce
Confidence            99655666667789999999999998887765432         26889999999 5555544  578899999988766


Q ss_pred             ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee----cCCceeEEEecCCCCcEE
Q 018293          201 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA----HDKAVCTISYNPLVPNLL  276 (358)
Q Consensus       201 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~~~~~~~l  276 (358)
                      ..........+..++|+|++ ..+++++.++.|.+||..++         +....+..    +...+.+++|+|++..++
T Consensus       177 ~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  246 (353)
T 3vgz_A          177 KTAIQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADN---------KILSRKKLLDDGKEHFFINISLDTARQRAF  246 (353)
T ss_dssp             EEEECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTT---------EEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred             EEEecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCC---------eEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence            55333245568899999965 47888888999999999876         44444443    455678899999984344


Q ss_pred             EEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          277 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       277 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      ++...++.|.+||..+++........  .  ...++|+|++++++++...++.|.+||+.+++.+..
T Consensus       247 ~~~~~~~~v~~~d~~~~~~~~~~~~~--~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~  309 (353)
T 3vgz_A          247 ITDSKAAEVLVVDTRNGNILAKVAAP--E--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT  309 (353)
T ss_dssp             EEESSSSEEEEEETTTCCEEEEEECS--S--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEEcC--C--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence            44445699999999988754333322  1  246899999997777777899999999998876654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=1.9e-23  Score=175.73  Aligned_cols=278  Identities=15%  Similarity=0.154  Sum_probs=187.5

Q ss_pred             cEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCC---cccceeeecCCccccCCCceE-EecCCCCeEEEEEcc
Q 018293            8 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPA---FPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLD   83 (358)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~vw~~~   83 (358)
                      ++++++..++     .+++|+...+   ...  .......   .+..+       +|+|+|+++ +++..++.|.+||+.
T Consensus         2 ~~~v~~~~~~-----~v~~~d~~~~---~~~--~~~~~~~~~~~~~~~-------~~s~dg~~l~v~~~~~~~v~~~d~~   64 (337)
T 1pby_B            2 DYILAPARPD-----KLVVIDTEKM---AVD--KVITIADAGPTPMVP-------MVAPGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEEETTT-----EEEEEETTTT---EEE--EEEECTTCTTCCCCE-------EECTTSSEEEEEETTTTEEEEEETT
T ss_pred             cEEEEcCCCC-----eEEEEECCCC---cEE--EEEEcCCCCCCccce-------EEcCCCCEEEEEeCCCCeEEEEECC
Confidence            4677776666     8899998764   221  1112222   23344       448999765 566678999999997


Q ss_pred             cccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE------------cCCeEEEEE
Q 018293           84 VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS------------ADKQVKIWD  151 (358)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------------~dg~v~iwd  151 (358)
                      +++........                      ....|...+.+++|+|+ +++++++.            .++.|.+||
T Consensus        65 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~~~~~~i~v~d  121 (337)
T 1pby_B           65 TGETLGRIDLS----------------------TPEERVKSLFGAALSPD-GKTLAIYESPVRLELTHFEVQPTRVALYD  121 (337)
T ss_dssp             TCCEEEEEECC----------------------BTTEEEECTTCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEE
T ss_pred             CCCeEeeEEcC----------------------CcccccccccceEECCC-CCEEEEEecccccccccccccCceEEEEE
Confidence            65543221110                      00012335678999999 55677665            579999999


Q ss_pred             CCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCC
Q 018293          152 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  231 (358)
Q Consensus       152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg  231 (358)
                      +.+++.+..+.. ...+.+++|+|++ +.++++  ++.|.+||+.+++...... .......+.|+|++..+++++..++
T Consensus       122 ~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~  196 (337)
T 1pby_B          122 AETLSRRKAFEA-PRQITMLAWARDG-SKLYGL--GRDLHVMDPEAGTLVEDKP-IQSWEAETYAQPDVLAVWNQHESSG  196 (337)
T ss_dssp             TTTTEEEEEEEC-CSSCCCEEECTTS-SCEEEE--SSSEEEEETTTTEEEEEEC-STTTTTTTBCCCBCCCCCCCCTTTT
T ss_pred             CCCCcEEEEEeC-CCCcceeEECCCC-CEEEEe--CCeEEEEECCCCcEeeeee-ccccCCCceeCCCccEEeeeccCCC
Confidence            999888777764 4568889999999 656666  6899999998776543221 1111123477887664444443333


Q ss_pred             -----------------------eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEE
Q 018293          232 -----------------------TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  288 (358)
Q Consensus       232 -----------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~  288 (358)
                                             .|.+||+.+++        .....+..+...+.+++|+|++ ++++++  ++.|.+|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~  265 (337)
T 1pby_B          197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--------MAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESF  265 (337)
T ss_dssp             EEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--------EEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEE
T ss_pred             ceeeeeeccccccccccccccccceEEEeCCCCC--------ceEeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEE
Confidence                                   46899998762        1134455666778899999998 777777  6899999


Q ss_pred             ecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          289 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      |+.+++....  +.. ...+.+++|+|+|++ |++++.++.|.+||+.+++.+...-
T Consensus       266 d~~~~~~~~~--~~~-~~~~~~~~~s~dg~~-l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          266 DLEKNASIKR--VPL-PHSYYSVNVSTDGST-VWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             ETTTTEEEEE--EEC-SSCCCEEEECTTSCE-EEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             ECCCCcCcce--ecC-CCceeeEEECCCCCE-EEEEcCCCcEEEEECcCCcEEEEEE
Confidence            9998874333  222 245788999999996 5567889999999999988776543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.93  E-value=2.5e-23  Score=180.43  Aligned_cols=210  Identities=12%  Similarity=0.122  Sum_probs=142.1

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCC-------CC-CceEee---ceeecCCcccceeeecCCccccCCCceEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDG-------GD-PNLYVH---HHIIIPAFPLCMAWLDCPLKDREKGNFMA   69 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~l~   69 (358)
                      |+++|++.+++++..+      .+.+|+...-       .. ..+...   .....+..+.+++|       +|+|++|+
T Consensus        42 lavs~~~~~l~~~~~d------gv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-------spdg~~la  108 (434)
T 2oit_A           42 LAVSNKYGLVFAGGAS------GLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL-------SCDNLTLS  108 (434)
T ss_dssp             EEEETTTTEEEEEETT------EEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE-------CTTSCEEE
T ss_pred             EEEecCCCEEEEECCC------EEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE-------cCCCCEEE
Confidence            4678888998888443      3555554211       00 011110   01112333445555       89999999


Q ss_pred             ----ecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCC
Q 018293           70 ----VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK  145 (358)
Q Consensus        70 ----~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg  145 (358)
                          +|+.|+.|+|||+.+......                ...+.......+.+|...|.+++|+|+++.+|++++.||
T Consensus       109 v~~~sgs~d~~v~iwd~~~~~~~~~----------------~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A          109 ACMMSSEYGSIIAFFDVRTFSNEAK----------------QQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             EEEEETTTEEEEEEEEHHHHHCTTC----------------SSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred             EEEeccCCCceEEEEEccccccCCc----------------CCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence                899999999999976411000                000011123355679999999999998678999999999


Q ss_pred             eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee-------ecCCeeeEEEcC
Q 018293          146 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-------VAADVESLAWDP  218 (358)
Q Consensus       146 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~i~~~~~~~  218 (358)
                      +|++||++++.......+|...|.+++|+|++ .+|++|+.||.|++||++ ++.......       +...+.+++|++
T Consensus       173 ~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~  250 (434)
T 2oit_A          173 SIAVLQVTETVKVCATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG  250 (434)
T ss_dssp             CEEEEEESSSEEEEEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred             eEEEEEcCCCcceeeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec
Confidence            99999999987776677788999999999998 899999999999999998 322221111       123789999998


Q ss_pred             CCCCeEEEEecCC------eEEEEEcccC
Q 018293          219 HAEHSFVVSLEDG------TIKGFDIRTA  241 (358)
Q Consensus       219 ~~~~~~~~~~~dg------~i~i~d~~~~  241 (358)
                      ++..+++....+|      .+++|++++.
T Consensus       251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          251 TYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CceEEEEEccCCCccCCCCceEEEEeccC
Confidence            5432222344443      3899999875

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.93  E-value=3.1e-22  Score=170.16  Aligned_cols=289  Identities=10%  Similarity=0.107  Sum_probs=179.1

Q ss_pred             cCCCcEEEEEEecC-CCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC----CeEE
Q 018293            4 NPNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME----PAIE   78 (358)
Q Consensus         4 ~p~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d----g~i~   78 (358)
                      .+....+++|.... +...+.+|.++...+   .+...... ....|..+       +|+|+|++|++++.+    +.|.
T Consensus        10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g---~~~~~~~~-~~~~p~~l-------~~spdg~~l~~~~~~~~~~~~v~   78 (361)
T 3scy_A           10 TDSELTMLVGTYTSGNSKGIYTFRFNEETG---ESLPLSDA-EVANPSYL-------IPSADGKFVYSVNEFSKDQAAVS   78 (361)
T ss_dssp             GGGEEEEEEEECCSSSCCEEEEEEEETTTC---CEEEEEEE-ECSCCCSE-------EECTTSSEEEEEECCSSTTCEEE
T ss_pred             CCCceEEEEEeccCCCCCCEEEEEEeCCCC---CEEEeecc-cCCCCceE-------EECCCCCEEEEEEccCCCCCcEE
Confidence            34556667775432 235666676776654   22221111 22233333       449999999988875    8999


Q ss_pred             EEEcccc-cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE-cCCeEEEEECCCCc
Q 018293           79 IWDLDVI-DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWDVAAGK  156 (358)
Q Consensus        79 vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~  156 (358)
                      +|+++.. ....                        .......+......+++  + +++|++++ .++.|.+|++....
T Consensus        79 ~~~~~~~~g~~~------------------------~~~~~~~~~~~p~~~~~--d-g~~l~~~~~~~~~v~~~~~~~~g  131 (361)
T 3scy_A           79 AFAFDKEKGTLH------------------------LLNTQKTMGADPCYLTT--N-GKNIVTANYSGGSITVFPIGQDG  131 (361)
T ss_dssp             EEEEETTTTEEE------------------------EEEEEECSSSCEEEEEE--C-SSEEEEEETTTTEEEEEEBCTTS
T ss_pred             EEEEeCCCCcEE------------------------EeeEeccCCCCcEEEEE--C-CCEEEEEECCCCEEEEEEeCCCC
Confidence            9998742 1111                        11112234456777787  5 44555554 68899999997543


Q ss_pred             eeeeec--------------ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC------c-------cceeeecC
Q 018293          157 CNLTLE--------------HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH------S-------GFKWAVAA  209 (358)
Q Consensus       157 ~~~~~~--------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~-------~~~~~~~~  209 (358)
                      .+..+.              .+...+.+++|+|++..++++...++.+.+|++.....      .       ........
T Consensus       132 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  211 (361)
T 3scy_A          132 ALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGS  211 (361)
T ss_dssp             CBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTC
T ss_pred             cCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCC
Confidence            332211              11233578999999933445555689999999876542      1       11122345


Q ss_pred             CeeeEEEcCCCCCeEEEEe-cCCeEEEEEcccCCCCCCCCCCCccEEEe---ecCCceeEEEecCCCCcEEEEEeC--CC
Q 018293          210 DVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGST--DK  283 (358)
Q Consensus       210 ~i~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~~l~~~~~--dg  283 (358)
                      .+..++|+|++. ++++++ .++.|.+||+.++..       .....+.   .+......++|+|++ ++|+++..  ++
T Consensus       212 ~~~~~~~spdg~-~l~v~~~~~~~v~v~~~~~g~~-------~~~~~~~~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~  282 (361)
T 3scy_A          212 GPRHLIFNSDGK-FAYLINEIGGTVIAFRYADGML-------DEIQTVAADTVNAQGSGDIHLSPDG-KYLYASNRLKAD  282 (361)
T ss_dssp             CEEEEEECTTSS-EEEEEETTTCEEEEEEEETTEE-------EEEEEEESCSSCCCCEEEEEECTTS-SEEEEEECSSSC
T ss_pred             CCeEEEEcCCCC-EEEEEcCCCCeEEEEEecCCce-------EEeEEEecCCCCCCCcccEEECCCC-CEEEEECCCCCC
Confidence            678999999765 555544 789999999985521       1222222   223446799999999 66655554  58


Q ss_pred             cEEEEecC--CCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc--CCCc
Q 018293          284 MVKLWDLS--NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL--SDAG  340 (358)
Q Consensus       284 ~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~--~~~~  340 (358)
                      .|.+|++.  +++...+..... ...+..++|+|+|+++++++..++.|.+|++.  +++.
T Consensus       283 ~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~  342 (361)
T 3scy_A          283 GVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL  342 (361)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence            89999996  444333443333 45678899999999766655578999997654  5543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.93  E-value=1.1e-23  Score=182.67  Aligned_cols=252  Identities=15%  Similarity=0.171  Sum_probs=170.7

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      ++++++.++++++.++ ++||+.........   ...  .       ..............|...|.+++|+|+ +++|+
T Consensus        43 avs~~~~~l~~~~~dg-v~v~~~~~~~~~~~---~~~--~-------~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~la  108 (434)
T 2oit_A           43 AVSNKYGLVFAGGASG-LQIFPTKNLLIQNK---PGD--D-------PNKIVDKVQGLLVPMKFPIHHLALSCD-NLTLS  108 (434)
T ss_dssp             EEETTTTEEEEEETTE-EEEEEHHHHCCCCC---TTC--C-------TTCEEECCCCEEECCSSCEEEEEECTT-SCEEE
T ss_pred             EEecCCCEEEEECCCE-EEEEEchHhhhhcc---ccc--C-------cccccccCccccccCCCcccEEEEcCC-CCEEE
Confidence            3488999999999888 89988754321100   000  0       000000000111236778999999999 56777


Q ss_pred             ----EEEcCCeEEEEECCCC--------ce---eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce
Q 018293          140 ----SASADKQVKIWDVAAG--------KC---NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  204 (358)
Q Consensus       140 ----s~~~dg~v~iwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  204 (358)
                          +|+.|+.|++||+.++        +.   ...+.+|...|.+++|+|+++.+|++++.||+|++||++++......
T Consensus       109 v~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~  188 (434)
T 2oit_A          109 ACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT  188 (434)
T ss_dssp             EEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE
T ss_pred             EEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec
Confidence                7888999999998754        11   45566799999999999985589999999999999999987554444


Q ss_pred             eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee-------cCCceeEEEecCCCCcEEE
Q 018293          205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-------HDKAVCTISYNPLVPNLLA  277 (358)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~i~~~~~~~~~l~  277 (358)
                      ..|...+.+++|+|+ +.++++|+.||.|++||.+ +         .....+..       |...+.+++|++++ .+++
T Consensus       189 ~~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~-~---------~~~~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~  256 (434)
T 2oit_A          189 LPSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPT-L---------QEKKVIPCPPFYESDHPVRVLDVLWIGTY-VFAI  256 (434)
T ss_dssp             ECGGGCEEEEEECTT-SSCEEEEETTSCEEEECTT-C---------CEEEEECCCTTCCTTSCEEEEEEEEEETT-EEEE
T ss_pred             cCCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccC-C---------cccccccCCcccCCCCceeEEEEEEecCc-eEEE
Confidence            557789999999996 5689999999999999998 3         22233322       23479999999977 5554


Q ss_pred             E-EeCCCc------EEEEecCCCC---ceeeEecC-------CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          278 T-GSTDKM------VKLWDLSNNQ---PSCIASRN-------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       278 ~-~~~dg~------i~i~d~~~~~---~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      + ...||.      +++|+++..+   +.....+.       ....+-..+...++.+.++++.+..+.|.+.....
T Consensus       257 ~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~  333 (434)
T 2oit_A          257 VYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQS  333 (434)
T ss_dssp             EEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred             EEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence            3 444433      8999998653   11112211       22233334455577776677777777777777543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=5.6e-23  Score=191.20  Aligned_cols=292  Identities=12%  Similarity=0.119  Sum_probs=191.5

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCC---CCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDG---GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI   77 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i   77 (358)
                      ++|+|+|+.|+++.. +     .+++|+...+   ....+..+     ...+.++       +|||||++|+.++ ++.|
T Consensus       114 ~~~SpDg~~l~~~~~-~-----~i~~~d~~~~~~~~~~~l~~~-----~~~~~~~-------~~SPDG~~la~~~-~~~i  174 (741)
T 2ecf_A          114 YQWSPDAQRLLFPLG-G-----ELYLYDLKQEGKAAVRQLTHG-----EGFATDA-------KLSPKGGFVSFIR-GRNL  174 (741)
T ss_dssp             CEECTTSSEEEEEET-T-----EEEEEESSSCSTTSCCBCCCS-----SSCEEEE-------EECTTSSEEEEEE-TTEE
T ss_pred             eEECCCCCEEEEEeC-C-----cEEEEECCCCCcceEEEcccC-----Ccccccc-------cCCCCCCEEEEEe-CCcE
Confidence            468999999999865 4     8999998765   22222222     1222334       4599999999987 5699


Q ss_pred             EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCC------------
Q 018293           78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK------------  145 (358)
Q Consensus        78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg------------  145 (358)
                      ++||+.+++....   ....... .       ...............+.+++|+|+ +++|++++.|+            
T Consensus       175 ~~~d~~~g~~~~~---~~~~~~~-~-------~~g~~~~v~~~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~  242 (741)
T 2ecf_A          175 WVIDLASGRQMQL---TADGSTT-I-------GNGIAEFVADEEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVY  242 (741)
T ss_dssp             EEEETTTTEEEEC---CCCCCSS-E-------EESCCCHHHHHHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEEC
T ss_pred             EEEecCCCCEEEe---ccCCccc-e-------eccccceeeeeccccccceEECCC-CCEEEEEEEcCCCCceEecCCCC
Confidence            9999976432210   0000000 0       000000000000122578999999 56777777665            


Q ss_pred             ---------------------eEEEEECCC-Cceeeeec--ccccceeeEEEcCCCCcEEEEEeC-----CCcEEEEEcc
Q 018293          146 ---------------------QVKIWDVAA-GKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSF-----DRSVVMKDAR  196 (358)
Q Consensus       146 ---------------------~v~iwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~  196 (358)
                                           .|.+||+.+ ++......  .|...+..++| |++ +.|++++.     +..|.+||+.
T Consensus       243 p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~  320 (741)
T 2ecf_A          243 ADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLA  320 (741)
T ss_dssp             SSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETT
T ss_pred             CCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECC
Confidence                                 889999988 77554432  47788999999 999 66665543     5789999999


Q ss_pred             cCCCccceeeecC----CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEE-EecCC
Q 018293          197 ISTHSGFKWAVAA----DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI-SYNPL  271 (358)
Q Consensus       197 ~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i-~~~~~  271 (358)
                      +++.......+..    .+..++|+|++. +++++..+|.+++|.+...        .. ...+..+...+..+ .|+|+
T Consensus       321 ~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~--------~~-~~~l~~~~~~v~~~~~~s~d  390 (741)
T 2ecf_A          321 SNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSK--------GK-AAALTHGNWSVDELLAVDEK  390 (741)
T ss_dssp             TCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSS--------SC-EEESCCSSSCEEEEEEEETT
T ss_pred             CCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCC--------CC-eeeeeecceEEEeEeEEeCC
Confidence            8776553333332    456899999765 8888999998888887633        14 56666777788887 59999


Q ss_pred             CCcEEEEEeCCC--cEEEEecCC-CCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC---CeEEEEEccCC
Q 018293          272 VPNLLATGSTDK--MVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK---GKLEIWDTLSD  338 (358)
Q Consensus       272 ~~~~l~~~~~dg--~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~  338 (358)
                      +..++++++.++  .+++|++.. +.  ....+.. ...+..++|+|+|++++++.+..   +.+.+|+...+
T Consensus       391 g~~l~~~~~~~~~~~~~l~~~~~~g~--~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          391 AGLAYFRAGIESARESQIYAVPLQGG--QPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             TTEEEEEECSSCTTCBEEEEEETTCC--CCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             CCEEEEEEeCCCCceEEEEEEEcCCC--Ceeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence            944555666666  899999864 33  2333443 55688999999999766555544   46888987543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.92  E-value=7.1e-23  Score=173.17  Aligned_cols=249  Identities=11%  Similarity=0.042  Sum_probs=170.8

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      .+++++++.++++++.++.|++||..+++.......                          +....+..++|+|++..+
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~--------------------------~~~~~~~~~~~s~dg~~~   57 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--------------------------PDKFGPGTAMMAPDNRTA   57 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--------------------------SSCCSSCEEEECTTSSEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec--------------------------CCCCCCceeEECCCCCEE
Confidence            345688999999999999999999976543322110                          111246789999995545


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeeccc------ccceeeEEEcCCCCcEEEEEeCC------------CcEEEEEcccCC
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEHH------TDKVQAVAWNHHSPQILLSGSFD------------RSVVMKDARIST  199 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~  199 (358)
                      ++++..++.|.+||+.+++.+..+...      ...+..++|+|++ +++++++.+            +.|.+||+.+++
T Consensus        58 ~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  136 (349)
T 1jmx_B           58 YVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL  136 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred             EEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence            566667899999999999887766532      2337899999999 777777755            899999998754


Q ss_pred             Ccc--ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCC-------------------------c
Q 018293          200 HSG--FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ-------------------------S  252 (358)
Q Consensus       200 ~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------------------~  252 (358)
                      ...  ........+.+++|+|++. + ++++  +.|.+||+.+++.........                         .
T Consensus       137 ~~~~~~~~~~~~~~~~~~~s~dg~-l-~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (349)
T 1jmx_B          137 EAKPVRTFPMPRQVYLMRAADDGS-L-YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM  212 (349)
T ss_dssp             GBCCSEEEECCSSCCCEEECTTSC-E-EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred             ccceeeeccCCCcccceeECCCCc-E-EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence            322  1233445688999999765 4 4443  449999998764211000000                         0


Q ss_pred             ----------------------------------cEEEeecCCceeEEEecC-CCCcEEEEEeCCCcEEEEecCCCCcee
Q 018293          253 ----------------------------------SFTLHAHDKAVCTISYNP-LVPNLLATGSTDKMVKLWDLSNNQPSC  297 (358)
Q Consensus       253 ----------------------------------~~~~~~~~~~i~~i~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~  297 (358)
                                                        ...+..+...+.+++++| ++ ++++++  ++.|.+||+.+++...
T Consensus       213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~~~~  289 (349)
T 1jmx_B          213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRKLIK  289 (349)
T ss_dssp             EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTTTEEEE
T ss_pred             eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECccCeEEE
Confidence                                              000011123456788899 88 777777  8899999999887433


Q ss_pred             eEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          298 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       298 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      ....   ...+.+++|+|++++ |++++.++.|.+||+.+++.+.+.
T Consensus       290 ~~~~---~~~~~~~~~s~dg~~-l~~~~~~~~v~v~d~~~~~~~~~~  332 (349)
T 1jmx_B          290 AANL---DHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDTLEKVKNI  332 (349)
T ss_dssp             EEEC---SSCCCEEEECSSSSC-EEEESBSSEEEEEETTTTEEEEEE
T ss_pred             EEcC---CCCccceEECCCCCE-EEEecCCCeEEEEeccccceeeee
Confidence            3222   234678999999986 445788899999999998877654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=2.3e-22  Score=169.62  Aligned_cols=269  Identities=10%  Similarity=0.100  Sum_probs=165.5

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEecc--CCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC-CCCeE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEES--DGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS-MEPAI   77 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i   77 (358)
                      ++|+|+++.|+++..++  +  .+.+|+..  .+   .+...........+.++.|       +|++++|++++ .++.|
T Consensus        43 ~~~spdg~~l~~~~~~~--~--~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------s~dg~~l~~~~~~~~~i  108 (343)
T 1ri6_A           43 MVVSPDKRYLYVGVRPE--F--RVLAYRIAPDDG---ALTFAAESALPGSLTHIST-------DHQGQFVFVGSYNAGNV  108 (343)
T ss_dssp             EEECTTSSEEEEEETTT--T--EEEEEEECTTTC---CEEEEEEEECSSCCSEEEE-------CTTSSEEEEEETTTTEE
T ss_pred             EEECCCCCEEEEeecCC--C--eEEEEEecCCCC---ceeeccccccCCCCcEEEE-------cCCCCEEEEEecCCCeE
Confidence            46899999988886653  3  55555544  33   2222222222233444444       89999776655 58999


Q ss_pred             EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE-cCCeEEEEECCC-C
Q 018293           78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWDVAA-G  155 (358)
Q Consensus        78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~-~  155 (358)
                      .+||+..+...                        ....... ....+.+++|+|+ ++++++++ .++.|.+||+.+ +
T Consensus       109 ~~~d~~~~~~~------------------------~~~~~~~-~~~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~  162 (343)
T 1ri6_A          109 SVTRLEDGLPV------------------------GVVDVVE-GLDGCHSANISPD-NRTLWVPALKQDRICLFTVSDDG  162 (343)
T ss_dssp             EEEEEETTEEE------------------------EEEEEEC-CCTTBCCCEECTT-SSEEEEEEGGGTEEEEEEECTTS
T ss_pred             EEEECCCCccc------------------------ccccccc-CCCCceEEEECCC-CCEEEEecCCCCEEEEEEecCCC
Confidence            99999421111                        1111112 2345889999999 45666666 899999999987 6


Q ss_pred             ceee----eecc-cccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc--CCCccceee--e------cCCeeeEEEcCCC
Q 018293          156 KCNL----TLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--STHSGFKWA--V------AADVESLAWDPHA  220 (358)
Q Consensus       156 ~~~~----~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~--~------~~~i~~~~~~~~~  220 (358)
                      +...    .+.. ....+..++|+|++..+++++..++.+.+||+..  ++.......  .      ...+..++|+|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg  242 (343)
T 1ri6_A          163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG  242 (343)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred             ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence            4432    2222 3357888999999933445555899999999964  222111110  1      1245679999976


Q ss_pred             CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe-CCCcEEEEec--CCCCcee
Q 018293          221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDL--SNNQPSC  297 (358)
Q Consensus       221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~d~--~~~~~~~  297 (358)
                      ..+++++..++.|.+||+......     ...+..+..+.. +.+++|+|++ ++|++++ .++.|.+|++  .+++...
T Consensus       243 ~~l~v~~~~~~~i~v~d~~~~~~~-----~~~~~~~~~~~~-~~~~~~s~dg-~~l~~~~~~~~~v~v~~~d~~~g~~~~  315 (343)
T 1ri6_A          243 RHLYACDRTASLITVFSVSEDGSV-----LSKEGFQPTETQ-PRGFNVDHSG-KYLIAAGQKSHHISVYEIVGEQGLLHE  315 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCC-----EEEEEEEECSSS-CCCEEECTTS-SEEEEECTTTCEEEEEEEETTTTEEEE
T ss_pred             CEEEEEecCCCEEEEEEEcCCCCc-----eEEeeeecCCCc-cceEEECCCC-CEEEEecCCCCeEEEEEEcCCCceeeE
Confidence            655556668999999999832100     133344444444 8899999998 6666666 6899999955  4554333


Q ss_pred             eEecCCCCceeEEEEEcCCC
Q 018293          298 IASRNPKAGAVFSVAFSEDS  317 (358)
Q Consensus       298 ~~~~~~~~~~v~~~~~~~~~  317 (358)
                      +..+... ....+++|.++.
T Consensus       316 ~~~~~~g-~~p~~i~~~~~~  334 (343)
T 1ri6_A          316 KGRYAVG-QGPMWVVVNAHE  334 (343)
T ss_dssp             EEEEECS-SSCCEEEEEEEC
T ss_pred             ccccccC-CCCeeEEEEccc
Confidence            4333332 334556666643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=3.3e-22  Score=185.50  Aligned_cols=301  Identities=13%  Similarity=0.099  Sum_probs=182.2

Q ss_pred             CcccCCCcEEEEEEecCCCc----eEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCe
Q 018293            1 MTINPNDAVIVCARNEDDVS----HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA   76 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~   76 (358)
                      ++|||+|+.|+++..+....    .-.+++|+...+....+.. .. .....+.       .++|||||++||.++. +.
T Consensus        66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~-~~~~~~~-------~~~~SPdG~~la~~~~-~~  135 (723)
T 1xfd_A           66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP-PE-VSNAKLQ-------YAGWGPKGQQLIFIFE-NN  135 (723)
T ss_dssp             EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC-TT-CCSCCCS-------BCCBCSSTTCEEEEET-TE
T ss_pred             EEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccC-Cc-ccccccc-------ccEECCCCCEEEEEEC-Ce
Confidence            36899999999996543211    1478899887653211111 10 0001112       4556999999999885 79


Q ss_pred             EEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCc---------ccEEEEecCCCCCcEEEEEEcCC--
Q 018293           77 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT---------DSVLGLAWNKEFRNILASASADK--  145 (358)
Q Consensus        77 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~l~s~~~dg--  145 (358)
                      |++||+.+++.....  ..+ .             .  ...+.++.         ..+.+++|+|+ ++.|++++.|+  
T Consensus       136 i~~~~~~~g~~~~~~--~~~-~-------------~--~~~~~g~~~~v~~ee~~~~~~~~~~SpD-g~~la~~~~~~~~  196 (723)
T 1xfd_A          136 IYYCAHVGKQAIRVV--STG-K-------------E--GVIYNGLSDWLYEEEILKTHIAHWWSPD-GTRLAYAAINDSR  196 (723)
T ss_dssp             EEEESSSSSCCEEEE--CCC-B-------------T--TTEEEEECCHHHHHTTSSSSEEEEECTT-SSEEEEEEEECTT
T ss_pred             EEEEECCCCceEEEe--cCC-C-------------C--CceECcccceeEEEEeccCcceEEECCC-CCEEEEEEECCCc
Confidence            999999865432210  000 0             0  00000111         23478999999 56787777553  


Q ss_pred             --------------------------------eEEEEECCCCceeeeeccc------ccceeeEEEcCCCCcEEEEEeC-
Q 018293          146 --------------------------------QVKIWDVAAGKCNLTLEHH------TDKVQAVAWNHHSPQILLSGSF-  186 (358)
Q Consensus       146 --------------------------------~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~-  186 (358)
                                                      .|.+||+.+++....+..+      ...+..++|+|+| +++++... 
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~  275 (723)
T 1xfd_A          197 VPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNR  275 (723)
T ss_dssp             SCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEET
T ss_pred             cceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC-eEEEEEEcC
Confidence                                            7999999988765556543      5678999999999 67766543 


Q ss_pred             ---CCcEEEEEcccCCCccceeee-cCCe----eeEEEcCCCCCeEEE-EecCC------eEEEEEc-ccCCCCCCCCCC
Q 018293          187 ---DRSVVMKDARISTHSGFKWAV-AADV----ESLAWDPHAEHSFVV-SLEDG------TIKGFDI-RTAKSDPDSTSQ  250 (358)
Q Consensus       187 ---dg~i~i~d~~~~~~~~~~~~~-~~~i----~~~~~~~~~~~~~~~-~~~dg------~i~i~d~-~~~~~~~~~~~~  250 (358)
                         +..|.+||+.+++........ ...+    ..++|+|++..++++ +..++      .|.+||. ..+..       
T Consensus       276 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-------  348 (723)
T 1xfd_A          276 AQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN-------  348 (723)
T ss_dssp             TSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS-------
T ss_pred             CCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc-------
Confidence               357999999887754433222 2333    378999987766655 55677      4666663 33210       


Q ss_pred             CccEEEeecCCceeE-EEecCCCCcEEEEE-eCC--CcEEEEecCCCCceeeEecCC---CCceeEEEEEcCCCCeEEEE
Q 018293          251 QSSFTLHAHDKAVCT-ISYNPLVPNLLATG-STD--KMVKLWDLSNNQPSCIASRNP---KAGAVFSVAFSEDSPFVLAI  323 (358)
Q Consensus       251 ~~~~~~~~~~~~i~~-i~~~~~~~~~l~~~-~~d--g~i~i~d~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~  323 (358)
                      .....+..+...+.. ++|+|++ +.|+.. ..+  +.+++|++..........+..   |...+..++|+|+|+++++.
T Consensus       349 ~~~~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          349 DNIQSITSGDWDVTKILAYDEKG-NKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             CCCCBSCCSSSCEEEEEEEETTT-TEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             cceeEeecCCeEEEeeeEEcCCC-CEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence            002223333334444 6999999 666544 444  789999986532111222332   56678899999999976665


Q ss_pred             EccCC--eEEEEEccCCC
Q 018293          324 GGSKG--KLEIWDTLSDA  339 (358)
Q Consensus       324 ~~~dg--~i~vw~~~~~~  339 (358)
                      .+..+  ...+++..+++
T Consensus       428 ~~~~~~p~~~~~~~~~~~  445 (723)
T 1xfd_A          428 CEGPGVPMVTVHNTTDKK  445 (723)
T ss_dssp             CCSSSSCCEEEEETTTCC
T ss_pred             ccCCCCCeEEEEECCCCC
Confidence            55444  23445554444

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=1.9e-22  Score=193.92  Aligned_cols=280  Identities=9%  Similarity=0.009  Sum_probs=197.4

Q ss_pred             Cccc-CCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE-
Q 018293            1 MTIN-PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE-   78 (358)
Q Consensus         1 l~~~-p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~-   78 (358)
                      ++|+ |+|+.|+++. .+     .+++++...+....+..+..    ..+.       .+.|+ ||+.|++++.++.+. 
T Consensus       301 ~~~S~pdG~~la~~~-~~-----~i~~~~~~~~~~~~~~~~~~----~~~~-------~~~~s-dg~~l~~~s~~~~l~~  362 (1045)
T 1k32_A          301 EDFSPLDGDLIAFVS-RG-----QAFIQDVSGTYVLKVPEPLR----IRYV-------RRGGD-TKVAFIHGTREGDFLG  362 (1045)
T ss_dssp             EEEEECGGGCEEEEE-TT-----EEEEECTTSSBEEECSCCSC----EEEE-------EECSS-SEEEEEEEETTEEEEE
T ss_pred             eeecCCCCCEEEEEE-cC-----EEEEEcCCCCceEEccCCCc----ceEE-------eeeEc-CCCeEEEEECCCceEE
Confidence            3578 9999999885 44     78888876542111111110    0112       34568 999999988888888 


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN  158 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  158 (358)
                      +|++.+...                            ..+.+|...+..++|+|+ +++|++++.++.|++||+.+++..
T Consensus       363 ~~d~~~~~~----------------------------~~l~~~~~~~~~~~~SpD-G~~la~~~~~~~v~~~d~~tg~~~  413 (1045)
T 1k32_A          363 IYDYRTGKA----------------------------EKFEENLGNVFAMGVDRN-GKFAVVANDRFEIMTVDLETGKPT  413 (1045)
T ss_dssp             EEETTTCCE----------------------------EECCCCCCSEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEECCCCCc----------------------------eEecCCccceeeeEECCC-CCEEEEECCCCeEEEEECCCCceE
Confidence            888764321                            112257788999999999 679999999999999999999888


Q ss_pred             eeecccccceeeEEEcCCCCcEEEEEeCC----------CcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEe
Q 018293          159 LTLEHHTDKVQAVAWNHHSPQILLSGSFD----------RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL  228 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  228 (358)
                      ..+..|...+.+++|+|+| ++|++++.+          +.|++||+.+++ ......+...+..++|+|++. .++.++
T Consensus       414 ~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~-~l~~~s  490 (1045)
T 1k32_A          414 VIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK-NLYYLS  490 (1045)
T ss_dssp             EEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC-EEEEEE
T ss_pred             EeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC-EEEEEe
Confidence            7777888999999999999 777776654          489999998766 333445666788899999654 777777


Q ss_pred             cCCeEEEEEcccCCCCCC---------------------------------C-CCCCccEEEeecCCceeEEEecCCCCc
Q 018293          229 EDGTIKGFDIRTAKSDPD---------------------------------S-TSQQSSFTLHAHDKAVCTISYNPLVPN  274 (358)
Q Consensus       229 ~dg~i~i~d~~~~~~~~~---------------------------------~-~~~~~~~~~~~~~~~i~~i~~~~~~~~  274 (358)
                      .++....|+.........                                 . .....+..+..|...+..++++|++ .
T Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg-~  569 (1045)
T 1k32_A          491 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS-I  569 (1045)
T ss_dssp             SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE-E
T ss_pred             cccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCC-e
Confidence            777766676432211000                                 0 0011234455567788999999988 6


Q ss_pred             EEEE-------------EeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          275 LLAT-------------GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       275 ~l~~-------------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      ++++             ......|.+||+.+++...+.      ..+.+++|+|||++ |++++.+ .|++||+.+++
T Consensus       570 ~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~-l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          570 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKT-VMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             EEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCE-EEEEETT-SCEEEEESSCT
T ss_pred             EEEEecccCcccccccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCE-EEEEcCC-cEEEEeCccCc
Confidence            6664             122456888999888742222      56889999999996 6666655 89999998876

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=1.5e-21  Score=180.52  Aligned_cols=234  Identities=10%  Similarity=0.102  Sum_probs=166.1

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      +|||| ++++.+. ++.|++||+.+++..                            .+..+...+.+++|+|+ ++.|+
T Consensus        88 ~~spd-~~~~~~~-~~~i~~~d~~~~~~~----------------------------~l~~~~~~~~~~~~Spd-G~~la  136 (706)
T 2z3z_A           88 LDAGR-GLVVLFT-QGGLVGFDMLARKVT----------------------------YLFDTNEETASLDFSPV-GDRVA  136 (706)
T ss_dssp             EETTT-TEEEEEE-TTEEEEEETTTTEEE----------------------------EEECCTTCCTTCEECTT-SSEEE
T ss_pred             EECCC-CeEEEEE-CCEEEEEECCCCceE----------------------------EccCCcccccCCcCCCC-CCEEE
Confidence            45899 5555553 599999999754321                            11235567888999999 56777


Q ss_pred             EEEcCCeEEEEECCC-----Cceeeeecccccc--------------eeeEEEcCCCCcEEEEEe---------------
Q 018293          140 SASADKQVKIWDVAA-----GKCNLTLEHHTDK--------------VQAVAWNHHSPQILLSGS---------------  185 (358)
Q Consensus       140 s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~~l~~~~---------------  185 (358)
                      ++ .|+.|.+||+.+     ++.......+...              +.++.|+|+| +.|++++               
T Consensus       137 ~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~  214 (706)
T 2z3z_A          137 YV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYH  214 (706)
T ss_dssp             EE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECC
T ss_pred             EE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccC
Confidence            74 789999999998     7766544433332              4899999999 7787776               


Q ss_pred             ------------------CCCcEEEEEcccCCCcccee--eecCCeeeEEEcCCCCCeEEEEecCC-----eEEEEEccc
Q 018293          186 ------------------FDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVVSLEDG-----TIKGFDIRT  240 (358)
Q Consensus       186 ------------------~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~dg-----~i~i~d~~~  240 (358)
                                        .+..|.+||+.+++......  .+...+..++|+|++. .+++++.++     .|++||+.+
T Consensus       215 ~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~  293 (706)
T 2z3z_A          215 PLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAET  293 (706)
T ss_dssp             SSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTT
T ss_pred             CCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCC
Confidence                              45789999998776433221  3456689999999654 677766665     899999987


Q ss_pred             CCCCCCCCCCCccEEEe--ecCC---ceeEEEecC--CCCcEEEEEeCCCcEEEEecC-CCCceeeEecCCCCceeEE-E
Q 018293          241 AKSDPDSTSQQSSFTLH--AHDK---AVCTISYNP--LVPNLLATGSTDKMVKLWDLS-NNQPSCIASRNPKAGAVFS-V  311 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~--~~~~---~i~~i~~~~--~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~v~~-~  311 (358)
                      +         .....+.  .+..   .+.+++|+|  ++ .+++++..|+.+++|++. +++  ....+..+...+.. +
T Consensus       294 g---------~~~~~~~~~~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~--~~~~l~~~~~~v~~~~  361 (706)
T 2z3z_A          294 G---------RFVRTLFVETDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGR--LIRQVTKGEWEVTNFA  361 (706)
T ss_dssp             C---------CEEEEEEEEECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSC--EEEECCCSSSCEEEEE
T ss_pred             C---------ceeeEEEEccCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCC--EEEecCCCCeEEEeee
Confidence            6         2222222  2222   246789999  88 789999999999999876 343  35556667777876 7


Q ss_pred             EEcCCCCeEEEEEccCC----eEEEEEccCCC
Q 018293          312 AFSEDSPFVLAIGGSKG----KLEIWDTLSDA  339 (358)
Q Consensus       312 ~~~~~~~~~l~~~~~dg----~i~vw~~~~~~  339 (358)
                      +|+|+++.++++++.++    .|..||+.+++
T Consensus       362 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          362 GFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             EECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             EEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            99999997677776665    67777776654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=2.3e-22  Score=181.88  Aligned_cols=231  Identities=11%  Similarity=0.107  Sum_probs=167.2

Q ss_pred             CccccCCCceEEecCC-CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCc-ccEEEEecCCCCC
Q 018293           58 PLKDREKGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT-DSVLGLAWNKEFR  135 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~  135 (358)
                      +++|+|||++||+++. ||+++||++++++..                            .+..|. ..+..++|+|+  
T Consensus        26 ~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----------------------------~lt~~~~~~~~~~~~spd--   75 (582)
T 3o4h_A           26 SLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----------------------------KLNREPINSVLDPHYGVG--   75 (582)
T ss_dssp             EEEEEETTTEEEEEEEETTEEEEEEEETTEEE----------------------------ECCSSCCSEECEECTTCS--
T ss_pred             eeecCCCCCeEEEEEccCCceeEEEEcCCCcE----------------------------eeecccccccccccCCCC--
Confidence            4456999999999887 999999998543211                            122344 68999999998  


Q ss_pred             cEEEEEEc---CCeEEEEECCC---CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecC
Q 018293          136 NILASASA---DKQVKIWDVAA---GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  209 (358)
Q Consensus       136 ~~l~s~~~---dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  209 (358)
                      +++++++.   +....+|.+..   +... .+... ..+...+|+|++...+++++.++.+.+||+.+++... ...+..
T Consensus        76 ~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~-l~~~~~  152 (582)
T 3o4h_A           76 RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE-LARLPG  152 (582)
T ss_dssp             EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE-EEEESS
T ss_pred             eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE-eecCCC
Confidence            57777765   45556655533   2222 33322 2344668888886666666666667799998876544 222333


Q ss_pred             CeeeEEEcCCCCCeEEEEecC----CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC--
Q 018293          210 DVESLAWDPHAEHSFVVSLED----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK--  283 (358)
Q Consensus       210 ~i~~~~~~~~~~~~~~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg--  283 (358)
                        .+++|+|++. .++.++.+    +.|++||+.++         . ...+..|...+..++|+||| +.|+++..++  
T Consensus       153 --~~~~~spDG~-~la~~~~~~~~~~~i~~~d~~~g---------~-~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~  218 (582)
T 3o4h_A          153 --FGFVSDIRGD-LIAGLGFFGGGRVSLFTSNLSSG---------G-LRVFDSGEGSFSSASISPGM-KVTAGLETAREA  218 (582)
T ss_dssp             --CEEEEEEETT-EEEEEEEEETTEEEEEEEETTTC---------C-CEEECCSSCEEEEEEECTTS-CEEEEEECSSCE
T ss_pred             --ceEEECCCCC-EEEEEEEcCCCCeEEEEEcCCCC---------C-ceEeecCCCccccceECCCC-CEEEEccCCCee
Confidence              8899999654 77766665    77999998875         2 34667888889999999999 7888888888  


Q ss_pred             cEEEEecCCCCceeeEecCCCCceeEEEE--------EcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          284 MVKLWDLSNNQPSCIASRNPKAGAVFSVA--------FSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       284 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      .|++||+.+++..   ....|...+..++        |+|||. ++++++.||.+++|++  ++..
T Consensus       219 ~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          219 RLVTVDPRDGSVE---DLELPSKDFSSYRPTAITWLGYLPDGR-LAVVARREGRSAVFID--GERV  278 (582)
T ss_dssp             EEEEECTTTCCEE---ECCCSCSHHHHHCCSEEEEEEECTTSC-EEEEEEETTEEEEEET--TEEE
T ss_pred             EEEEEcCCCCcEE---EccCCCcChhhhhhccccceeEcCCCc-EEEEEEcCCcEEEEEE--CCee
Confidence            8999999988743   5566666666666        999995 7999999999999999  5443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=3.2e-21  Score=185.46  Aligned_cols=277  Identities=12%  Similarity=0.063  Sum_probs=199.4

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceee---------cCCcccceeeecCCcccc-CCCceEEec
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHII---------IPAFPLCMAWLDCPLKDR-EKGNFMAVG   71 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~s-~~~~~l~~g   71 (358)
                      .|+|+|+.|+.+ .++     .+++|+....   .+.......         ....+..       ++|| |||++|+++
T Consensus       251 ~~SpDG~~la~~-~~~-----~i~~~d~~~~---~l~~l~~~~~~~~~~~~~~~~~v~~-------~~~S~pdG~~la~~  314 (1045)
T 1k32_A          251 HLNTDGRRILFS-KGG-----SIYIFNPDTE---KIEKIEIGDLESPEDRIISIPSKFA-------EDFSPLDGDLIAFV  314 (1045)
T ss_dssp             EEEESSSCEEEE-ETT-----EEEEECTTTC---CEEECCCCCCCBCCSEEEECGGGGE-------EEEEECGGGCEEEE
T ss_pred             eEcCCCCEEEEE-eCC-----EEEEecCCce---EeeeeccCcccccccccccccccce-------eeecCCCCCEEEEE
Confidence            578999998888 455     8888887332   222111000         0011223       4459 999999998


Q ss_pred             CCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcc-cEEEEecCCCCCcEEEEEEcCCeEE-E
Q 018293           72 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD-SVLGLAWNKEFRNILASASADKQVK-I  149 (358)
Q Consensus        72 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~v~-i  149 (358)
                      + ++.|.+|++.++...                            .+..|.. .+..++|+ + +..|+.++.++.+. +
T Consensus       315 ~-~~~i~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~s-d-g~~l~~~s~~~~l~~~  363 (1045)
T 1k32_A          315 S-RGQAFIQDVSGTYVL----------------------------KVPEPLRIRYVRRGGD-T-KVAFIHGTREGDFLGI  363 (1045)
T ss_dssp             E-TTEEEEECTTSSBEE----------------------------ECSCCSCEEEEEECSS-S-EEEEEEEETTEEEEEE
T ss_pred             E-cCEEEEEcCCCCceE----------------------------EccCCCcceEEeeeEc-C-CCeEEEEECCCceEEE
Confidence            8 889999998643211                            1234666 89999999 7 66888888888888 9


Q ss_pred             EECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEec
Q 018293          150 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE  229 (358)
Q Consensus       150 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  229 (358)
                      ||+.+++... +..|...+..++|+|++ +.|++++.++.|++||+.+++.......+...+..++|+|++. ++++++.
T Consensus       364 ~d~~~~~~~~-l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~-~la~~~~  440 (1045)
T 1k32_A          364 YDYRTGKAEK-FEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR-FIAYGFP  440 (1045)
T ss_dssp             EETTTCCEEE-CCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC-EEEEEEE
T ss_pred             EECCCCCceE-ecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCC-eEEEEec
Confidence            9998776544 33777889999999999 8899999999999999998876654546778899999999665 6666555


Q ss_pred             C----------CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc----
Q 018293          230 D----------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----  295 (358)
Q Consensus       230 d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----  295 (358)
                      +          +.|++||+.++         . ...+..|...+..++|+|+| +.|+.++.++...+|+......    
T Consensus       441 ~~~~~~~~~~~~~i~l~d~~~g---------~-~~~l~~~~~~~~~~~~spdG-~~l~~~s~~~~~~~~~~~~~~~~~~~  509 (1045)
T 1k32_A          441 LKHGETDGYVMQAIHVYDMEGR---------K-IFAATTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVLNFSFEV  509 (1045)
T ss_dssp             ECSSTTCSCCEEEEEEEETTTT---------E-EEECSCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSSCEECCS
T ss_pred             CccccccCCCCCeEEEEECCCC---------c-EEEeeCCCcccCCceEcCCC-CEEEEEecccCCcCcchhcccccccc
Confidence            4          48999999875         3 55667788888999999999 7888888877766666432210    


Q ss_pred             -------------------------------------eeeEecCCCCceeEEEEEcCCCCeEEEE-------------Ec
Q 018293          296 -------------------------------------SCIASRNPKAGAVFSVAFSEDSPFVLAI-------------GG  325 (358)
Q Consensus       296 -------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~-------------~~  325 (358)
                                                           ..+..+..+.+.+..++++|+|.. +++             .+
T Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~-~~~~~~~g~~~~~~~~~~  588 (1045)
T 1k32_A          510 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL-IYSVPVHGEFAAYYQGAP  588 (1045)
T ss_dssp             CBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEE-EEECCCCCSHHHHHHCCC
T ss_pred             CceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeE-EEEecccCcccccccccC
Confidence                                                 012233446677899999999984 553             12


Q ss_pred             cCCeEEEEEccCCCc
Q 018293          326 SKGKLEIWDTLSDAG  340 (358)
Q Consensus       326 ~dg~i~vw~~~~~~~  340 (358)
                      ....|.+||+.+++.
T Consensus       589 ~~~~l~~~d~~~~~~  603 (1045)
T 1k32_A          589 EKGVLLKYDVKTRKV  603 (1045)
T ss_dssp             CCEEEEEEETTTCCE
T ss_pred             CCceEEEEECCCCcE
Confidence            345788899887763

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.89  E-value=1.1e-21  Score=177.33  Aligned_cols=269  Identities=8%  Similarity=0.028  Sum_probs=179.3

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCC---CCeE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM---EPAI   77 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i   77 (358)
                      ++|+|||+.|+.+...+  +..++|..+...  ...+..++.    ....       ++.|||| +++++++.   +...
T Consensus        27 ~~~~~DG~~la~~s~~~--g~~~lw~~~~g~--~~~lt~~~~----~~~~-------~~~~spd-~~l~~~~~~~g~~~~   90 (582)
T 3o4h_A           27 LQGVVDGDKLLVVGFSE--GSVNAYLYDGGE--TVKLNREPI----NSVL-------DPHYGVG-RVILVRDVSKGAEQH   90 (582)
T ss_dssp             EEEEETTTEEEEEEEET--TEEEEEEEETTE--EEECCSSCC----SEEC-------EECTTCS-EEEEEEECSTTSCCE
T ss_pred             eecCCCCCeEEEEEccC--CceeEEEEcCCC--cEeeecccc----cccc-------cccCCCC-eEEEEeccCCCCcce
Confidence            46899999999986644  566666653221  111111110    1111       3456899 77777664   5567


Q ss_pred             EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce
Q 018293           78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC  157 (358)
Q Consensus        78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  157 (358)
                      +||.++..+.-..                     .    .+. ....+...+|+|++...+++.+.++.+.+||+.+++.
T Consensus        91 ~l~~~~~~~~g~~---------------------~----~l~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~  144 (582)
T 3o4h_A           91 ALFKVNTSRPGEE---------------------Q----RLE-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL  144 (582)
T ss_dssp             EEEEEETTSTTCC---------------------E----ECT-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE
T ss_pred             EEEEEeccCCCcc---------------------c----ccc-CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE
Confidence            7777653110000                     0    010 1112335577887655555555555566999998876


Q ss_pred             eeeecccccceeeEEEcCCCCcEEEEEeCC----CcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCC--
Q 018293          158 NLTLEHHTDKVQAVAWNHHSPQILLSGSFD----RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--  231 (358)
Q Consensus       158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg--  231 (358)
                      ......+ .  .+++|+|+| +.+++++.+    +.|++||+.+++... ...+...+..++|+|++. .++++..++  
T Consensus       145 ~~l~~~~-~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~~~-l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~  218 (582)
T 3o4h_A          145 RELARLP-G--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGLRV-FDSGEGSFSSASISPGMK-VTAGLETAREA  218 (582)
T ss_dssp             EEEEEES-S--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCCEE-ECCSSCEEEEEEECTTSC-EEEEEECSSCE
T ss_pred             EEeecCC-C--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCceE-eecCCCccccceECCCCC-EEEEccCCCee
Confidence            5554433 3  789999999 888877766    789999998877653 456667789999999655 677888888  


Q ss_pred             eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEE--------ecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCC
Q 018293          232 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS--------YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP  303 (358)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~--------~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  303 (358)
                      .|++||+.++         ... .+..|...+..++        |+|+| .++++++.|+.+++|++  ++.  ..   .
T Consensus       219 ~i~~~d~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~--~~---~  280 (582)
T 3o4h_A          219 RLVTVDPRDG---------SVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GER--VE---A  280 (582)
T ss_dssp             EEEEECTTTC---------CEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEE--EC---C
T ss_pred             EEEEEcCCCC---------cEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCe--ec---c
Confidence            8999999876         333 5566777777777        99999 99999999999999999  442  21   3


Q ss_pred             CCceeEEEEEcCCCCeEEEEEccCC---eEEEEEccC
Q 018293          304 KAGAVFSVAFSEDSPFVLAIGGSKG---KLEIWDTLS  337 (358)
Q Consensus       304 ~~~~v~~~~~~~~~~~~l~~~~~dg---~i~vw~~~~  337 (358)
                      ..+.+.+++|+ +++ ++++++.+.   .+.+|+..+
T Consensus       281 ~~~~v~~~~~s-dg~-~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          281 PQGNHGRVVLW-RGK-LVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             CSSEEEEEEEE-TTE-EEEEEEETTEEEEEEEETTCC
T ss_pred             CCCceEEEEec-CCE-EEEEEcCCCCCCeEEEEcCCC
Confidence            34678999999 888 467777664   366666543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=4.5e-20  Score=155.94  Aligned_cols=259  Identities=8%  Similarity=0.102  Sum_probs=158.9

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeece-eecCCcccceeeecCCccccCCCceEEecC-CCCeEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH-IIIPAFPLCMAWLDCPLKDREKGNFMAVGS-MEPAIE   78 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~   78 (358)
                      ++|+|+|+ |+++...+  ..-.+++|+...+   .+..... ......+..+       +|+|+|++|++++ .++.|.
T Consensus        45 ~a~spdg~-l~~~~~~~--~~~~v~~~~~~~g---~~~~~~~~~~~~~~p~~~-------a~spdg~~l~~~~~~~~~v~  111 (347)
T 3hfq_A           45 LALSAKDC-LYSVDKED--DEGGIAAWQIDGQ---TAHKLNTVVAPGTPPAYV-------AVDEARQLVYSANYHKGTAE  111 (347)
T ss_dssp             EEECTTCE-EEEEEEET--TEEEEEEEEEETT---EEEEEEEEEEESCCCSEE-------EEETTTTEEEEEETTTTEEE
T ss_pred             EEEccCCe-EEEEEecC--CCceEEEEEecCC---cEEEeeeeecCCCCCEEE-------EECCCCCEEEEEeCCCCEEE
Confidence            46899999 55554422  1236777776543   2111111 1122233333       4489999888877 779999


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECC-CCce
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA-AGKC  157 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~  157 (358)
                      +|++..............             ....+.  ...+...+.+++|+|++. ++++...++.|.+|++. +++.
T Consensus       112 v~~~~~~g~~~~~~~~~~-------------~~~~p~--~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~  175 (347)
T 3hfq_A          112 VMKIAADGALTLTDTVQH-------------SGHGPR--PEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQL  175 (347)
T ss_dssp             EEEECTTSCEEEEEEEEC-------------CCCCSS--TTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCE
T ss_pred             EEEeCCCCCeeecceeec-------------CCCCCC--ccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcE
Confidence            999963222111110000             000000  112345689999999955 77777778999999998 5543


Q ss_pred             ee--eecc-cccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc--CCCccc--eeeec------CCeeeEEEcCCCCCeE
Q 018293          158 NL--TLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--STHSGF--KWAVA------ADVESLAWDPHAEHSF  224 (358)
Q Consensus       158 ~~--~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~--~~~~~------~~i~~~~~~~~~~~~~  224 (358)
                      ..  .+.. ....+..++|+|++..++++...++.+.+|++..  ++....  .....      ..+..++|+|++..++
T Consensus       176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~  255 (347)
T 3hfq_A          176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLY  255 (347)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEE
T ss_pred             EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEE
Confidence            22  2222 2235778999999933555567789999999875  221110  11111      3478899999766455


Q ss_pred             EEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC-CCcEEEE--ecCCCCc
Q 018293          225 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVKLW--DLSNNQP  295 (358)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~i~--d~~~~~~  295 (358)
                      ++...++.|.+||+.....      ...+..+..+...+..++|+|++ ++|++++. ++.|.+|  |..+++.
T Consensus       256 v~~~~~~~v~v~~~~~~g~------~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          256 VSNRGYNTLAVFAVTADGH------LTLIQQISTEGDFPRDFDLDPTE-AFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             EEEETTTEEEEEEECGGGC------EEEEEEEECSSSCCCEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEeCCCCEEEEEEECCCCc------EEEeEEEecCCCCcCeEEECCCC-CEEEEEEcCCCcEEEEEEeCCCCeE
Confidence            6677789999999973210      13445555556678999999999 66766665 5899999  5455654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=3e-22  Score=185.66  Aligned_cols=280  Identities=10%  Similarity=0.071  Sum_probs=179.3

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCC-------
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-------   73 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-------   73 (358)
                      ++++|++.+++.+ .++     .+++|+...+....+..++... .....+       ++|||||++|++++.       
T Consensus        21 ~~~s~dg~~~~~~-~d~-----~i~~~~~~~g~~~~~~~~~~~~-~~~~~~-------~~~SpDg~~la~~~~~~~~~~~   86 (719)
T 1z68_A           21 PNWISGQEYLHQS-ADN-----NIVLYNIETGQSYTILSNRTMK-SVNASN-------YGLSPDRQFVYLESDYSKLWRY   86 (719)
T ss_dssp             CEESSSSEEEEEC-TTS-----CEEEEESSSCCEEEEECHHHHH-TTTCSE-------EEECTTSSEEEEEEEEEECSSS
T ss_pred             cEECCCCeEEEEc-CCC-----CEEEEEcCCCcEEEEEcccccc-ccceee-------EEECCCCCeEEEEecCceeEEe
Confidence            3689999655544 444     7888998776433333333211 001223       345999999998876       


Q ss_pred             --CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEE
Q 018293           74 --EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  151 (358)
Q Consensus        74 --dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd  151 (358)
                        ++.|++||+.+++.....                         .   ....+..++|+|+ ++.|+.+. ++.|++||
T Consensus        87 s~~~~i~~~d~~~g~~~~~~-------------------------~---l~~~~~~~~~SPD-G~~la~~~-~~~i~~~~  136 (719)
T 1z68_A           87 SYTATYYIYDLSNGEFVRGN-------------------------E---LPRPIQYLCWSPV-GSKLAYVY-QNNIYLKQ  136 (719)
T ss_dssp             CEEEEEEEEETTTTEECCSS-------------------------C---CCSSBCCEEECSS-TTCEEEEE-TTEEEEES
T ss_pred             ecceEEEEEECCCCccccce-------------------------e---cCcccccceECCC-CCEEEEEE-CCeEEEEe
Confidence              789999999865432100                         0   1245888999999 55777764 78999999


Q ss_pred             CCCCceeeee-cccccce-----------------eeEEEcCCCCcEEEEEeCCC-------------------------
Q 018293          152 VAAGKCNLTL-EHHTDKV-----------------QAVAWNHHSPQILLSGSFDR-------------------------  188 (358)
Q Consensus       152 ~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~~l~~~~~dg-------------------------  188 (358)
                      +.+++..... .++...+                 .+++|+||| +.|++++.|.                         
T Consensus       137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp  215 (719)
T 1z68_A          137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP  215 (719)
T ss_dssp             STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred             CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence            9888765433 2222222                 489999999 7788776542                         


Q ss_pred             ---------cEEEEEcccCCCc---cc-----eeeecCCeeeEEEcCCCCCeEEEEecC----CeEEEEE----cccCCC
Q 018293          189 ---------SVVMKDARISTHS---GF-----KWAVAADVESLAWDPHAEHSFVVSLED----GTIKGFD----IRTAKS  243 (358)
Q Consensus       189 ---------~i~i~d~~~~~~~---~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~d----g~i~i~d----~~~~~~  243 (358)
                               .|.+||+.+++..   ..     ...+...+..++|+|+ +.++++....    ..|.+||    ..+++.
T Consensus       216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~  294 (719)
T 1z68_A          216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDC  294 (719)
T ss_dssp             BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEEC
T ss_pred             CCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCce
Confidence                     7889999876532   10     1135567899999997 4566654332    2488888    655522


Q ss_pred             CCCCCCCCccEE--EeecCCcee-----EEEecCCCCcEEE-EEeCCC--cEEEEecCCCCceeeEecCCCCceeEEEEE
Q 018293          244 DPDSTSQQSSFT--LHAHDKAVC-----TISYNPLVPNLLA-TGSTDK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAF  313 (358)
Q Consensus       244 ~~~~~~~~~~~~--~~~~~~~i~-----~i~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~  313 (358)
                             ..+..  ...|...+.     .+.|+|+|..+++ +...+|  .|.+||+.+++   ...+..+...+..+.+
T Consensus       295 -------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~---~~~lt~~~~~v~~~~~  364 (719)
T 1z68_A          295 -------PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN---AIQITSGKWEAINIFR  364 (719)
T ss_dssp             -------CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT---CEECSCSSSCEEEEEE
T ss_pred             -------EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc---eEecccCceEEEEEEE
Confidence                   11111  135666666     7899999954444 344555  47777877765   2344455556777777


Q ss_pred             cCCCCeEEEEEcc----CCeEEEEEccC
Q 018293          314 SEDSPFVLAIGGS----KGKLEIWDTLS  337 (358)
Q Consensus       314 ~~~~~~~l~~~~~----dg~i~vw~~~~  337 (358)
                      + +++.+++++..    ++..++|.+..
T Consensus       365 ~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          365 V-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             E-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             E-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            7 88866666655    58889998764

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.89  E-value=3.4e-21  Score=165.39  Aligned_cols=282  Identities=11%  Similarity=0.025  Sum_probs=176.0

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      +|+|+|+.|+.+...+  +..++|+++...+....+...+.    ....       .+.|+|||+.|+.++.++.|++||
T Consensus        42 ~~SpDg~~l~~~~~~~--g~~~l~~~d~~~g~~~~lt~~~~----~~~~-------~~~~spdg~~l~~~~~~~~l~~~d  108 (388)
T 3pe7_A           42 CFTRDGSKLLFGGAFD--GPWNYYLLDLNTQVATQLTEGRG----DNTF-------GGFLSPDDDALFYVKDGRNLMRVD  108 (388)
T ss_dssp             CBCTTSCEEEEEECTT--SSCEEEEEETTTCEEEECCCSSC----BCSS-------SCEECTTSSEEEEEETTTEEEEEE
T ss_pred             cCCCCCCEEEEEEcCC--CCceEEEEeCCCCceEEeeeCCC----CCcc-------ceEEcCCCCEEEEEeCCCeEEEEE
Confidence            5899999999987644  45578999987652222211111    0111       234599999999999999999999


Q ss_pred             cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEE--ecCCCCCcEEEEE------------------
Q 018293           82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL--AWNKEFRNILASA------------------  141 (358)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~l~s~------------------  141 (358)
                      +.+++....                           ...+...+...  .++|+ +.+++..                  
T Consensus       109 ~~~g~~~~~---------------------------~~~~~~~~~~~~~~~~~d-g~~l~~~~~~~~~~~~~~~~~~~~~  160 (388)
T 3pe7_A          109 LATLEENVV---------------------------YQVPAEWVGYGTWVANSD-CTKLVGIEIRREDWVPLTDWKKFHE  160 (388)
T ss_dssp             TTTCCEEEE---------------------------EECCTTEEEEEEEEECTT-SSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred             CCCCcceee---------------------------eechhhcccccceeECCC-CCeeccccccCcccccccccchhhh
Confidence            986543221                           11233334333  34788 4566532                  


Q ss_pred             ----EcCCeEEEEECCCCceeeeecccccceeeEEEcC-CCCcEEEEEeCC------CcEEEEEcccCCCccceeeec--
Q 018293          142 ----SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH-HSPQILLSGSFD------RSVVMKDARISTHSGFKWAVA--  208 (358)
Q Consensus       142 ----~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--  208 (358)
                          ..+..|.+||+.+++... +..+...+..+.|+| ++ ..++....+      ..|.++|........ .....  
T Consensus       161 ~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~  237 (388)
T 3pe7_A          161 FYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEG  237 (388)
T ss_dssp             HGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTT
T ss_pred             hhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCC
Confidence                234679999999886544 444667789999999 88 666666543      378888876554433 22222  


Q ss_pred             CCeeeEEEcCCCCCeEEEEecCC----eEEEEEcccCCCCCCCCCCCccEEEeecCC---ceeEEEecCCCCcEEEEE--
Q 018293          209 ADVESLAWDPHAEHSFVVSLEDG----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDK---AVCTISYNPLVPNLLATG--  279 (358)
Q Consensus       209 ~~i~~~~~~~~~~~~~~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~i~~i~~~~~~~~~l~~~--  279 (358)
                      ..+...+|+|++..+++++..++    .|++||+.+++.       ..+..+..+..   ....+.|+|+|..++++.  
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  310 (388)
T 3pe7_A          238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-------RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQD  310 (388)
T ss_dssp             EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-------EEEEEECCEEEEEECTTSSEEEEEECCC------
T ss_pred             cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce-------EEEEcCCCceeeeecCCCCeEccCCCcceeEeee
Confidence            24778899998776655555433    399999987631       22222222100   012237899984444332  


Q ss_pred             ------eCCCcEEEEecCCCCceeeEecCCCCc-----------eeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          280 ------STDKMVKLWDLSNNQPSCIASRNPKAG-----------AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       280 ------~~dg~i~i~d~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                            ..+..|++||+.+++...+.   .+..           .+.+++|+|||+.++.++..+|...+|.+.-
T Consensus       311 ~~~~~~~~~~~i~~~d~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          311 DSGYKIENDPFLYVFNMKNGTQHRVA---RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             ------CCCCEEEEEETTTTEEEEEE---ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             ccccccCCCCEEEEEeccCCceEEec---cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence                  44668999999987643332   2333           4677899999998777777788777776653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=2.6e-21  Score=162.69  Aligned_cols=233  Identities=11%  Similarity=0.053  Sum_probs=164.3

Q ss_pred             ceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcc-cEEEEecCCCCCcEEEEEEcC
Q 018293           66 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD-SVLGLAWNKEFRNILASASAD  144 (358)
Q Consensus        66 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~d  144 (358)
                      ++|++++.++.|++||..+++......                          .++.. .+..++|+|++..+++++..+
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~--------------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~   55 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVIT--------------------------IADAGPTPMVPMVAPGGRIAYATVNKS   55 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEE--------------------------CTTCTTCCCCEEECTTSSEEEEEETTT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEE--------------------------cCCCCCCccceEEcCCCCEEEEEeCCC
Confidence            478999999999999997654332211                          01222 477899999965566677778


Q ss_pred             CeEEEEECCCCceeeeeccc-----ccceeeEEEcCCCCcEEEEEe------------CCCcEEEEEcccCCCccceeee
Q 018293          145 KQVKIWDVAAGKCNLTLEHH-----TDKVQAVAWNHHSPQILLSGS------------FDRSVVMKDARISTHSGFKWAV  207 (358)
Q Consensus       145 g~v~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~  207 (358)
                      +.|.+||+.+++.+..+...     ...+..++|+|++ +.+++++            .++.|.+||+.+++... ....
T Consensus        56 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~  133 (337)
T 1pby_B           56 ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK-AFEA  133 (337)
T ss_dssp             TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE-EEEC
T ss_pred             CeEEEEECCCCCeEeeEEcCCcccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCcEEE-EEeC
Confidence            99999999999887766531     2267889999999 6677775            57999999998766544 2334


Q ss_pred             cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC----
Q 018293          208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK----  283 (358)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg----  283 (358)
                      ...+..++|+|++. .++++  ++.|.+||+.++         .....+..+.. ...+.|+|++..+++++..++    
T Consensus       134 ~~~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~~---------~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~  200 (337)
T 1pby_B          134 PRQITMLAWARDGS-KLYGL--GRDLHVMDPEAG---------TLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMAT  200 (337)
T ss_dssp             CSSCCCEEECTTSS-CEEEE--SSSEEEEETTTT---------EEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred             CCCcceeEECCCCC-EEEEe--CCeEEEEECCCC---------cEeeeeecccc-CCCceeCCCccEEeeeccCCCceee
Confidence            56688999999765 45555  689999999876         44444443331 113378898843333333333    


Q ss_pred             -------------------cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          284 -------------------MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       284 -------------------~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                                         .|.+||+.+++.. ......+...+.+++|+|++++ ++++  ++.|.+||+.+++.+..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~-l~~~--~~~v~~~d~~~~~~~~~  275 (337)
T 1pby_B          201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTR-AFGA--YNVLESFDLEKNASIKR  275 (337)
T ss_dssp             EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSE-EEEE--ESEEEEEETTTTEEEEE
T ss_pred             eeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCE-EEEe--CCeEEEEECCCCcCcce
Confidence                               4689999998754 4444556667889999999996 5545  68999999998876544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.88  E-value=2.9e-20  Score=158.18  Aligned_cols=241  Identities=12%  Similarity=0.084  Sum_probs=155.0

Q ss_pred             cccCCCceEEecCCCCeEEEEEcc-cccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCc-E
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLD-VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN-I  137 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~  137 (358)
                      +|+|+|++|++++.+ .|.+|++. +++.....                         ....+ +.+.+++|+|++.. +
T Consensus        46 a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~-------------------------~~~~~-g~~~~~~~spdg~~l~   98 (365)
T 1jof_A           46 TFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA-------------------------SHPIG-GHPRANDADTNTRAIF   98 (365)
T ss_dssp             EECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE-------------------------EEECC-SSGGGGCTTSCCEEEE
T ss_pred             EECCCCCEEEEEccc-eEEEEEECCCCCEEEee-------------------------EeecC-CCCccEEECCCCCEEE
Confidence            449999999988887 99999986 33221100                         00001 12456899999443 3


Q ss_pred             EEEEE-------------cCCeEEEEECC-CCceeeeec----ccccceeeEEEcCCCCcEEEEEe-CCCcEEEEEcc-c
Q 018293          138 LASAS-------------ADKQVKIWDVA-AGKCNLTLE----HHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDAR-I  197 (358)
Q Consensus       138 l~s~~-------------~dg~v~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~  197 (358)
                      ++++.             .+|.+.+|++. +++....+.    .+...+.+++|+|+| ++++++. .++.|.+||+. +
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~  177 (365)
T 1jof_A           99 LLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLAS  177 (365)
T ss_dssp             EEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTT
T ss_pred             EEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCC
Confidence            44543             68999999997 465544443    245678999999999 6666655 46899999998 5


Q ss_pred             CCCccc-eee---ecCCeeeEEEcCCCCCeEEEEe-cCCeEEEEEcccCCCCCCCCCCCcc---EEEe-------ecCC-
Q 018293          198 STHSGF-KWA---VAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSS---FTLH-------AHDK-  261 (358)
Q Consensus       198 ~~~~~~-~~~---~~~~i~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~-------~~~~-  261 (358)
                      ++.... ...   +...+..++|+|++. ++++++ .++.|.+|++.....       ...   ..+.       +|.. 
T Consensus       178 g~~~~~~~~~~~~~g~~p~~~~~spdg~-~l~v~~~~~~~v~v~~~~~~~g-------~~~~~~~~~~~~~~~~~g~~~~  249 (365)
T 1jof_A          178 GEVELVGSVDAPDPGDHPRWVAMHPTGN-YLYALMEAGNRICEYVIDPATH-------MPVYTHHSFPLIPPGIPDRDPE  249 (365)
T ss_dssp             SCEEEEEEEECSSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTTC-------CEEEEEEEEESSCTTCCCBCTT
T ss_pred             CCEEEeeeEecCCCCCCCCEeEECCCCC-EEEEEECCCCeEEEEEEeCCCC-------cEEEccceEEcCCCCcCCcccc
Confidence            543221 111   245688999999765 555554 578999998763210       111   1111       1222 


Q ss_pred             -----ceeEEE-ecCCCCcEEEEEeCC-C-----cEEEEecC-CCCceeeEe-cCCCCceeEEEEEcC---CCCeEEEEE
Q 018293          262 -----AVCTIS-YNPLVPNLLATGSTD-K-----MVKLWDLS-NNQPSCIAS-RNPKAGAVFSVAFSE---DSPFVLAIG  324 (358)
Q Consensus       262 -----~i~~i~-~~~~~~~~l~~~~~d-g-----~i~i~d~~-~~~~~~~~~-~~~~~~~v~~~~~~~---~~~~~l~~~  324 (358)
                           .+..++ |+|+| ++|+++..+ +     .|.+|++. +++...+.. ...+...+..++|+|   +|++ |+++
T Consensus       250 ~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~-l~v~  327 (365)
T 1jof_A          250 TGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW-MAIT  327 (365)
T ss_dssp             TSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE-EEEE
T ss_pred             cccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCE-EEEE
Confidence                 478999 99999 666665532 3     89999996 455322211 222334456789999   8997 5555


Q ss_pred             c-cCCeEEEEEccCC
Q 018293          325 G-SKGKLEIWDTLSD  338 (358)
Q Consensus       325 ~-~dg~i~vw~~~~~  338 (358)
                      + .++.|.+|++...
T Consensus       328 ~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          328 DDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CSSSCEEEEEEEETT
T ss_pred             EcCCCeEEEEEEchh
Confidence            5 4599999999765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.88  E-value=1.9e-20  Score=173.56  Aligned_cols=296  Identities=12%  Similarity=0.060  Sum_probs=186.3

Q ss_pred             CcccCCCcEEEEEEecCC----CceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCe
Q 018293            1 MTINPNDAVIVCARNEDD----VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA   76 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~   76 (358)
                      ++|||+|+.|+.+...+.    ...-.+++|+...+..   ....  .+.....       .++|||||++||.+. ++.
T Consensus        65 ~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~---~~~~--~l~~~~~-------~~~~SPDG~~la~~~-~~~  131 (719)
T 1z68_A           65 YGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF---VRGN--ELPRPIQ-------YLCWSPVGSKLAYVY-QNN  131 (719)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE---CCSS--CCCSSBC-------CEEECSSTTCEEEEE-TTE
T ss_pred             EEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc---ccce--ecCcccc-------cceECCCCCEEEEEE-CCe
Confidence            368999999998865210    0123889999876521   0000  1111222       345599999999986 789


Q ss_pred             EEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCccc---------EEEEecCCCCCcEEEEEEcCC--
Q 018293           77 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS---------VLGLAWNKEFRNILASASADK--  145 (358)
Q Consensus        77 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------v~~~~~~~~~~~~l~s~~~dg--  145 (358)
                      |++|++.+++....  ...                ......+.+|...         ..+++|+|+ ++.|++++.|.  
T Consensus       132 i~~~~~~~g~~~~l--~~~----------------~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD-G~~la~~~~d~~~  192 (719)
T 1z68_A          132 IYLKQRPGDPPFQI--TFN----------------GRENKIFNGIPDWVYEEEMLATKYALWWSPN-GKFLAYAEFNDTD  192 (719)
T ss_dssp             EEEESSTTSCCEEC--CCC----------------CBTTTEEESSCCHHHHHHTTCSSCCEEECTT-SSEEEEEEEECTT
T ss_pred             EEEEeCCCCCcEEE--ecC----------------CCcCCeEcccccceeeeecccCcccEEECCC-CCEEEEEEECCCC
Confidence            99999986543210  000                0000011233222         258999999 56888877652  


Q ss_pred             --------------------------------eEEEEECCCCcee--------eeecccccceeeEEEcCCCCcEEEEEe
Q 018293          146 --------------------------------QVKIWDVAAGKCN--------LTLEHHTDKVQAVAWNHHSPQILLSGS  185 (358)
Q Consensus       146 --------------------------------~v~iwd~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~l~~~~  185 (358)
                                                      .|++||+.+++..        ..+.+|...+..++|+|++ +++++..
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~  271 (719)
T 1z68_A          193 IPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWL  271 (719)
T ss_dssp             SCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEE
T ss_pred             CceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEe
Confidence                                            7899999988653        2234578889999999997 7776644


Q ss_pred             CC----CcEEEEE----cccCCCccce----eeecCCee-----eEEEcCCCCCeEE-EEecCC--eEEEEEcccCCCCC
Q 018293          186 FD----RSVVMKD----ARISTHSGFK----WAVAADVE-----SLAWDPHAEHSFV-VSLEDG--TIKGFDIRTAKSDP  245 (358)
Q Consensus       186 ~d----g~i~i~d----~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~~~~-~~~~dg--~i~i~d~~~~~~~~  245 (358)
                      ..    ..|.+||    ..+++.....    ..+...+.     .+.|+|++..+++ ++..+|  .|.+||+..+    
T Consensus       272 ~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~----  347 (719)
T 1z68_A          272 KRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE----  347 (719)
T ss_dssp             ESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST----
T ss_pred             ccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC----
Confidence            33    2488899    7776655544    34555566     8899998775555 344556  4666666544    


Q ss_pred             CCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC----CCcEEEEecCC--CCceeeEecC----CCCceeEEEEEcC
Q 018293          246 DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST----DKMVKLWDLSN--NQPSCIASRN----PKAGAVFSVAFSE  315 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----dg~i~i~d~~~--~~~~~~~~~~----~~~~~v~~~~~~~  315 (358)
                           . ...+..+...+..+.+. ++..+++++..    ++..++|.+..  +.. ....+.    ++...+..+.|+|
T Consensus       348 -----~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~-~~~~l~~~~~~~~~~~~~~~~s~  419 (719)
T 1z68_A          348 -----N-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPP-SKKCVTCHLRKERCQYYTASFSD  419 (719)
T ss_dssp             -----T-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSC-CEEESSTTTTTTTBCBEEEEECG
T ss_pred             -----c-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCC-CceeccCccCCCCCceEEEEECC
Confidence                 2 34455555667777777 77444445544    47888888764  321 112222    2556788899999


Q ss_pred             CCCeEEEEEccC--CeEEEEEccCCCcc
Q 018293          316 DSPFVLAIGGSK--GKLEIWDTLSDAGI  341 (358)
Q Consensus       316 ~~~~~l~~~~~d--g~i~vw~~~~~~~~  341 (358)
                      ++++++++++..  ..+.+||+.+++.+
T Consensus       420 dg~~l~~~~s~~~~p~~~l~d~~~g~~~  447 (719)
T 1z68_A          420 YAKYYALVCYGPGIPISTLHDGRTDQEI  447 (719)
T ss_dssp             GGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred             CCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence            999766665544  57889999887643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=8.1e-19  Score=149.08  Aligned_cols=279  Identities=9%  Similarity=0.087  Sum_probs=162.0

Q ss_pred             CcccCCCcEEEEEEecC-CCceEEEEEEeccCCCCCceEeeceee-cCCcccceeeecCCccccCCCceEEecC-CCCeE
Q 018293            1 MTINPNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHII-IPAFPLCMAWLDCPLKDREKGNFMAVGS-MEPAI   77 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i   77 (358)
                      |+|+|+++.|+++..++ ..+.+.+|.++...+   .+....... ....+..       +++  ++++|++++ .++.|
T Consensus        55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g---~~~~~~~~~~~~~~p~~-------~~~--dg~~l~~~~~~~~~v  122 (361)
T 3scy_A           55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG---TLHLLNTQKTMGADPCY-------LTT--NGKNIVTANYSGGSI  122 (361)
T ss_dssp             EEECTTSSEEEEEECCSSTTCEEEEEEEETTTT---EEEEEEEEECSSSCEEE-------EEE--CSSEEEEEETTTTEE
T ss_pred             EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC---cEEEeeEeccCCCCcEE-------EEE--CCCEEEEEECCCCEE
Confidence            47899999998886642 125666666665433   222111111 1112222       222  777776665 67899


Q ss_pred             EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce
Q 018293           78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC  157 (358)
Q Consensus        78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  157 (358)
                      .+|++...............          .   ..-......+...+.+++|+|++..++++...++.|.+|++.....
T Consensus       123 ~~~~~~~~g~~~~~~~~~~~----------~---g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~  189 (361)
T 3scy_A          123 TVFPIGQDGALLPASDVIEF----------K---GSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNAN  189 (361)
T ss_dssp             EEEEBCTTSCBCSCSEEEEC----------C---CCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCC
T ss_pred             EEEEeCCCCcCcccceeEEc----------c---CCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCC
Confidence            99999754333211100000          0   0000001123445789999999544555555689999999875431


Q ss_pred             ------e-------eeecccccceeeEEEcCCCCcEEEEEe-CCCcEEEEEcccCCCcccee-----eecCCeeeEEEcC
Q 018293          158 ------N-------LTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHSGFKW-----AVAADVESLAWDP  218 (358)
Q Consensus       158 ------~-------~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~  218 (358)
                            +       .........+..++|+|++ +++++++ .++.|.+||+.+++......     ........++|+|
T Consensus       190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp  268 (361)
T 3scy_A          190 ADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP  268 (361)
T ss_dssp             TTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT
T ss_pred             cccccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC
Confidence                  1       1112234567899999999 6665555 68999999998654321111     1123467999999


Q ss_pred             CCCCeEEEEe-c-CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe-CCCcEEEEec--CCC
Q 018293          219 HAEHSFVVSL-E-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDL--SNN  293 (358)
Q Consensus       219 ~~~~~~~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~d~--~~~  293 (358)
                      ++. +++++. . ++.|.+|++......     ...+..+.. ...+..++|+|++ ++|++++ .++.|.+|++  .++
T Consensus       269 dg~-~l~v~~~~~~~~i~v~~~~~~~g~-----~~~~~~~~~-g~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~d~~~g  340 (361)
T 3scy_A          269 DGK-YLYASNRLKADGVAIFKVDETNGT-----LTKVGYQLT-GIHPRNFIITPNG-KYLLVACRDTNVIQIFERDQATG  340 (361)
T ss_dssp             TSS-EEEEEECSSSCEEEEEEECTTTCC-----EEEEEEEEC-SSCCCEEEECTTS-CEEEEEETTTTEEEEEEECTTTC
T ss_pred             CCC-EEEEECCCCCCEEEEEEEcCCCCc-----EEEeeEecC-CCCCceEEECCCC-CEEEEEECCCCCEEEEEEECCCC
Confidence            765 555544 4 589999999632100     023333443 4567899999999 6666666 6788999655  455


Q ss_pred             CceeeEecCCCCceeEEEEEc
Q 018293          294 QPSCIASRNPKAGAVFSVAFS  314 (358)
Q Consensus       294 ~~~~~~~~~~~~~~v~~~~~~  314 (358)
                      +...+. ...+...+.|+.|.
T Consensus       341 ~~~~~~-~~~~~~~p~~v~~~  360 (361)
T 3scy_A          341 LLTDIK-KDIKVDKPVCLKFV  360 (361)
T ss_dssp             CEEECS-CCEECSSEEEEEEE
T ss_pred             cEeecc-eeeeCCCCeEEEEc
Confidence            522111 12233467888875

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=2.3e-19  Score=151.56  Aligned_cols=237  Identities=9%  Similarity=0.084  Sum_probs=156.2

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCC--cccceeeecCCccccCCCceE-EecCCCCeE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPA--FPLCMAWLDCPLKDREKGNFM-AVGSMEPAI   77 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i   77 (358)
                      +++++++.+++++..++     .+++|+...+   ....  ....+.  .+..+       +|+|+|+++ +++..++.|
T Consensus         5 ~~~~~~~~~~v~~~~~~-----~v~~~d~~~~---~~~~--~~~~~~~~~~~~~-------~~s~dg~~~~v~~~~~~~i   67 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPN-----NLHVVDVASD---TVYK--SCVMPDKFGPGTA-------MMAPDNRTAYVLNNHYGDI   67 (349)
T ss_dssp             CCCCTTCEEEEEEETTT-----EEEEEETTTT---EEEE--EEECSSCCSSCEE-------EECTTSSEEEEEETTTTEE
T ss_pred             ccccCCCEEEEEeCCCC-----eEEEEECCCC---cEEE--EEecCCCCCCcee-------EECCCCCEEEEEeCCCCcE
Confidence            46788899998887776     8999998765   2211  111222  23333       448999865 556678999


Q ss_pred             EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC------------C
Q 018293           78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD------------K  145 (358)
Q Consensus        78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------------g  145 (358)
                      .+||+.+++.........                     ....+...+.+++|+|+ ++++++++.+            +
T Consensus        68 ~~~d~~t~~~~~~~~~~~---------------------~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~  125 (349)
T 1jmx_B           68 YGIDLDTCKNTFHANLSS---------------------VPGEVGRSMYSFAISPD-GKEVYATVNPTQRLNDHYVVKPP  125 (349)
T ss_dssp             EEEETTTTEEEEEEESCC---------------------STTEEEECSSCEEECTT-SSEEEEEEEEEEECSSCEEECCC
T ss_pred             EEEeCCCCcEEEEEEccc---------------------ccccccccccceEECCC-CCEEEEEcccccccccccccCCC
Confidence            999997654332111000                     00001334788999999 5677777765            8


Q ss_pred             eEEEEECCCCcee---eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee---------------
Q 018293          146 QVKIWDVAAGKCN---LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---------------  207 (358)
Q Consensus       146 ~v~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------  207 (358)
                      .|.+||+.+++..   ..+. +...+.+++|+|++ + +++++  +.|.+||+.+++........               
T Consensus       126 ~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg-~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (349)
T 1jmx_B          126 RLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDG-S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF  200 (349)
T ss_dssp             EEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTS-C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCC
T ss_pred             eEEEEECCCccccceeeecc-CCCcccceeECCCC-c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceee
Confidence            9999999885433   3333 34468899999999 5 45544  34999998776533211100               


Q ss_pred             -----------------------------------------------------cCCeeeEEEcC-CCCCeEEEEecCCeE
Q 018293          208 -----------------------------------------------------AADVESLAWDP-HAEHSFVVSLEDGTI  233 (358)
Q Consensus       208 -----------------------------------------------------~~~i~~~~~~~-~~~~~~~~~~~dg~i  233 (358)
                                                                           ...+..++|+| ++. +++++  ++.|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~-~l~~~--~~~v  277 (349)
T 1jmx_B          201 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV--LNRL  277 (349)
T ss_dssp             CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE--ESEE
T ss_pred             ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC-EEEEE--cCeE
Confidence                                                                 01345667778 655 66666  8899


Q ss_pred             EEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          234 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       234 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      .+||+.++         +....+.. ...+.+++|+|++ ++|++++.++.|.+||+.+++.
T Consensus       278 ~~~d~~~~---------~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          278 AKYDLKQR---------KLIKAANL-DHTYYCVAFDKKG-DKLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             EEEETTTT---------EEEEEEEC-SSCCCEEEECSSS-SCEEEESBSSEEEEEETTTTEE
T ss_pred             EEEECccC---------eEEEEEcC-CCCccceEECCCC-CEEEEecCCCeEEEEeccccce
Confidence            99999876         44444443 3457899999998 6666678889999999988774

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.84  E-value=2.3e-19  Score=154.28  Aligned_cols=295  Identities=11%  Similarity=0.008  Sum_probs=170.3

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      ++|+|+|+.|+.+...+  +...+|+++...+....+..+.     .....      .+.|+|||++|+.++.++.|++|
T Consensus        41 ~~~SpdG~~l~~~~~~~--g~~~l~~~d~~~~~~~~l~~~~-----~~~~~------~~~~spdg~~l~~~~~~~~l~~~  107 (396)
T 3c5m_A           41 KCFTQDGKKLLFAGDFD--GNRNYYLLNLETQQAVQLTEGK-----GDNTF------GGFISTDERAFFYVKNELNLMKV  107 (396)
T ss_dssp             CCBCTTSCEEEEEECTT--SSCEEEEEETTTTEEEECCCSS-----CBCTT------TCEECTTSSEEEEEETTTEEEEE
T ss_pred             CcCCCCCCEEEEEEecC--CCceEEEEECCCCcEEEeecCC-----CCccc------cceECCCCCEEEEEEcCCcEEEE
Confidence            36899999998886653  3446788887664211111111     01111      13459999999999989999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCc----ccEEEEecCCCCCcEEEEE-----EcCCeEEEEE
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT----DSVLGLAWNKEFRNILASA-----SADKQVKIWD  151 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~l~s~-----~~dg~v~iwd  151 (358)
                      |+.+++..............           .... .+....    .....+.|+|++ ..++.+     ..+..|.+||
T Consensus       108 d~~~~~~~~~~~~~~~~~~~-----------g~~l-~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~~~d  174 (396)
T 3c5m_A          108 DLETLEEQVIYTVDEEWKGY-----------GTWV-ANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLIKVD  174 (396)
T ss_dssp             ETTTCCEEEEEECCTTEEEE-----------EEEE-ECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEEEEE
T ss_pred             ECCCCCcEEEEecccccCCC-----------CCEE-EeccCCccccccccccccCCCC-cceeeeeeccCCCcceEEEEE
Confidence            99765432111100000000           0000 000000    001125688884 444433     3567899999


Q ss_pred             CCCCceeeeecccccceeeEEEcC-CCCcEEEEEeCC------CcEEEEEcccCCCccceeee-cCCeeeEEEcCCCCCe
Q 018293          152 VAAGKCNLTLEHHTDKVQAVAWNH-HSPQILLSGSFD------RSVVMKDARISTHSGFKWAV-AADVESLAWDPHAEHS  223 (358)
Q Consensus       152 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~  223 (358)
                      +.+++..... .+...+..+.|+| ++ ..++..+.+      ..|.+||+...+........ ...+..++|+|++..+
T Consensus       175 ~~~g~~~~~~-~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l  252 (396)
T 3c5m_A          175 IETGELEVIH-QDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAM  252 (396)
T ss_dssp             TTTCCEEEEE-EESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCE
T ss_pred             CCCCcEEeec-cCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEE
Confidence            9988765444 4667789999999 66 555555443      36888888655433222211 2247788999977655


Q ss_pred             EEEEecC----CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecC-CCCcEEEEEe----------------CC
Q 018293          224 FVVSLED----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP-LVPNLLATGS----------------TD  282 (358)
Q Consensus       224 ~~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~l~~~~----------------~d  282 (358)
                      ++++..+    +.|++||+.++         ... .+..... .. +.|+| ++ .+++.++                .+
T Consensus       253 ~~~~~~~~~~~~~l~~~d~~~g---------~~~-~l~~~~~-~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~  319 (396)
T 3c5m_A          253 AYVSYFKGQTDRVIYKANPETL---------ENE-EVMVMPP-CS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIEND  319 (396)
T ss_dssp             EEEEEETTTCCEEEEEECTTTC---------CEE-EEEECCS-EE-EEEECSSS-SEEEEEECCC----------CCCCC
T ss_pred             EEEecCCCCccceEEEEECCCC---------CeE-EeeeCCC-CC-CCccCCCC-ceEEEecCCcceeeccccccccCCC
Confidence            5544332    44999999865         221 2221222 23 88999 88 6776654                24


Q ss_pred             CcEEEEecCCCCceeeEecCCCC--------ceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          283 KMVKLWDLSNNQPSCIASRNPKA--------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       283 g~i~i~d~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      ..|++||+.+++...+......-        ..+..++|+|+|+++++++..++...+|.+.
T Consensus       320 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          320 PFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence            67999999887643332221100        0245678999999766665556665555543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.84  E-value=1.5e-19  Score=167.70  Aligned_cols=246  Identities=12%  Similarity=0.145  Sum_probs=155.9

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      +++|+|||++++++  ||.|++||+.+++....   +.+                   .....+......++|||+ +++
T Consensus        21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~---~~~-------------------~~~~~~~~~~~~~~~Spd-g~~   75 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF---LEN-------------------STFDEFGHSINDYSISPD-GQF   75 (740)
T ss_dssp             CEEECSSSEEEEEE--TTEEEEEETTTCCEEEE---ECT-------------------TTTTTCCSCCCEEEECTT-SSE
T ss_pred             ccEECCCCcEEEEc--CCcEEEEECCCCceEEE---Eec-------------------hhhhhhcccccceEECCC-CCE
Confidence            34458999999987  89999999987654211   110                   000112222345788999 567


Q ss_pred             EEEEEcC---------CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-ee
Q 018293          138 LASASAD---------KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AV  207 (358)
Q Consensus       138 l~s~~~d---------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~  207 (358)
                      |+.++.+         +.+.+||+++++.. .+..+...+...+|+||| +.|+.+ .++.|++||+.+++...... ..
T Consensus        76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~~~~lt~~g~  152 (740)
T 4a5s_A           76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYRITWTGK  152 (740)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEECCSCCB
T ss_pred             EEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCceEEEcCCCC
Confidence            8888776         56679999998754 456677889999999999 667666 47899999998766443221 11


Q ss_pred             c-----------------CCeeeEEEcCCCCCeEEEEe-cCC-----------------------------------eEE
Q 018293          208 A-----------------ADVESLAWDPHAEHSFVVSL-EDG-----------------------------------TIK  234 (358)
Q Consensus       208 ~-----------------~~i~~~~~~~~~~~~~~~~~-~dg-----------------------------------~i~  234 (358)
                      .                 .....+.|+||+. .|+... .++                                   .|+
T Consensus       153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~  231 (740)
T 4a5s_A          153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFF  231 (740)
T ss_dssp             TTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEE
T ss_pred             ccceecCcccccccchhcCCCcceEECCCCC-EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEE
Confidence            1                 1224589999766 555543 323                                   466


Q ss_pred             EEEccc---CCCCCCCCCCCccEEEe------ecCCceeEEEecCCCCcEEEEEeC----CCcEEEEecCCCCc------
Q 018293          235 GFDIRT---AKSDPDSTSQQSSFTLH------AHDKAVCTISYNPLVPNLLATGST----DKMVKLWDLSNNQP------  295 (358)
Q Consensus       235 i~d~~~---~~~~~~~~~~~~~~~~~------~~~~~i~~i~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~------  295 (358)
                      +||+.+   +..       .....+.      +|...+..++|+||+ ++++....    +..|.+||+.+++.      
T Consensus       232 v~d~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~  303 (740)
T 4a5s_A          232 VVNTDSLSSVTN-------ATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWNCLV  303 (740)
T ss_dssp             EEETTSCCSSSC-------CCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEECG
T ss_pred             EEECCCCCCCCc-------ceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccceeE
Confidence            666665   310       0222333      267779999999998 65555433    23699999988761      


Q ss_pred             eeeEecCCCCceeE-----EEEEcCCCCeEEEEEc-cCC--eEEEEEccCCCc
Q 018293          296 SCIASRNPKAGAVF-----SVAFSEDSPFVLAIGG-SKG--KLEIWDTLSDAG  340 (358)
Q Consensus       296 ~~~~~~~~~~~~v~-----~~~~~~~~~~~l~~~~-~dg--~i~vw~~~~~~~  340 (358)
                      ........+...+.     ...|+|||+.++...+ .+|  .|++||+.+++.
T Consensus       304 ~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          304 ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence            11111123444333     6789999996542443 444  688888876543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.84  E-value=6.2e-19  Score=151.29  Aligned_cols=241  Identities=10%  Similarity=0.011  Sum_probs=158.4

Q ss_pred             ccccCCCceEEecCC-CCe--EEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCC
Q 018293           59 LKDREKGNFMAVGSM-EPA--IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  135 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~-dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  135 (358)
                      ++|||||++|+.++. +|.  |.+||+.+++...                           ...++...+..+.|+|+ +
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---------------------------lt~~~~~~~~~~~~spd-g   92 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---------------------------LTEGRGDNTFGGFLSPD-D   92 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---------------------------CCCSSCBCSSSCEECTT-S
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---------------------------eeeCCCCCccceEEcCC-C
Confidence            567999999998887 674  7777876543221                           22245555556789999 6


Q ss_pred             cEEEEEEcCCeEEEEECCCCceeeeecccccceeeEE--EcCCCCcEEEEE----------------------eCCCcEE
Q 018293          136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVA--WNHHSPQILLSG----------------------SFDRSVV  191 (358)
Q Consensus       136 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~----------------------~~dg~i~  191 (358)
                      +.|+.++.++.|.+||+.+++....+..+...+....  +++++ ..++..                      ..+..|.
T Consensus        93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  171 (388)
T 3pe7_A           93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM  171 (388)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEE
Confidence            6888999899999999999987666665555554444  48888 666532                      2346799


Q ss_pred             EEEcccCCCccceeeecCCeeeEEEcC-CCCCeEEEEec------CCeEEEEEcccCCCCCCCCCCCccEEEeecC--Cc
Q 018293          192 MKDARISTHSGFKWAVAADVESLAWDP-HAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--KA  262 (358)
Q Consensus       192 i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~  262 (358)
                      +||+.+++... .......+..+.|+| ++. .++....      ...|.++|....          ....+..+.  ..
T Consensus       172 ~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~----------~~~~l~~~~~~~~  239 (388)
T 3pe7_A          172 RVDLKTGESTV-ILQENQWLGHPIYRPYDDS-TVAFCHEGPHDLVDARMWLINEDGT----------NMRKVKTHAEGES  239 (388)
T ss_dssp             EEETTTCCEEE-EEEESSCEEEEEEETTEEE-EEEEEECSCTTTSSCSEEEEETTSC----------CCEESCCCCTTEE
T ss_pred             EEECCCCceEE-eecCCccccccEECCCCCC-EEEEEEecCCCCCcceEEEEeCCCC----------ceEEeeeCCCCcc
Confidence            99998876443 445667789999999 765 4544443      236777777643          223333333  35


Q ss_pred             eeEEEecCCCCcEEEEEeCCC----cEEEEecCCCCceeeEecCCCCce---eEEEEEcCCCCeEEEEE--------ccC
Q 018293          263 VCTISYNPLVPNLLATGSTDK----MVKLWDLSNNQPSCIASRNPKAGA---VFSVAFSEDSPFVLAIG--------GSK  327 (358)
Q Consensus       263 i~~i~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~--------~~d  327 (358)
                      +..++|+|+|..+++++..++    .|++||+.+++...+.....+...   ...+.|+|||+.++++.        ..+
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  319 (388)
T 3pe7_A          240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEND  319 (388)
T ss_dssp             EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCC
T ss_pred             cccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCC
Confidence            778899999944444444333    399999999875555444431111   11137999999755433        456


Q ss_pred             CeEEEEEccCCCc
Q 018293          328 GKLEIWDTLSDAG  340 (358)
Q Consensus       328 g~i~vw~~~~~~~  340 (358)
                      ..|++||+.+++.
T Consensus       320 ~~i~~~d~~~~~~  332 (388)
T 3pe7_A          320 PFLYVFNMKNGTQ  332 (388)
T ss_dssp             CEEEEEETTTTEE
T ss_pred             CEEEEEeccCCce
Confidence            7899999988654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.83  E-value=1.6e-18  Score=145.25  Aligned_cols=237  Identities=18%  Similarity=0.125  Sum_probs=168.6

Q ss_pred             CccccCCCceEEecCCC------------------------CeEEEEEcccccCcCceeecCCcccccccccccCCceec
Q 018293           58 PLKDREKGNFMAVGSME------------------------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSS  113 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~d------------------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (358)
                      .++++++|+++++...+                        +.|.+||..+++....                       
T Consensus        28 ~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-----------------------   84 (329)
T 3fvz_A           28 GVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS-----------------------   84 (329)
T ss_dssp             EEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-----------------------
T ss_pred             EEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-----------------------
Confidence            45568999999988877                        3677777754433210                       


Q ss_pred             cccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc-eeeee---------cccccceeeEEEcC-CCCcEEE
Q 018293          114 IKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTL---------EHHTDKVQAVAWNH-HSPQILL  182 (358)
Q Consensus       114 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~~l~  182 (358)
                         .-.++-..+..++++|+ ++++++...++.|++||..... .+..+         ..+-.....++++| ++ .+++
T Consensus        85 ---~~~~~~~~p~gia~d~~-g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv  159 (329)
T 3fvz_A           85 ---SGKNLFYLPHGLSIDTD-GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFV  159 (329)
T ss_dssp             ---ECTTTCSSEEEEEECTT-SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEE
T ss_pred             ---cCCCccCCceEEEECCC-CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEE
Confidence               11134467899999999 5588888889999999976442 44444         23344688999999 55 7777


Q ss_pred             EEe-CCCcEEEEEcccCCCccceee----------ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCC
Q 018293          183 SGS-FDRSVVMKDARISTHSGFKWA----------VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ  251 (358)
Q Consensus       183 ~~~-~dg~i~i~d~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~  251 (358)
                      +.+ .++.|++||. .+........          ....+..++++|+++.++++...++.|++||..++         +
T Consensus       160 ~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---------~  229 (329)
T 3fvz_A          160 SDGYCNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---------E  229 (329)
T ss_dssp             EECSSCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---------C
T ss_pred             EeCCCCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---------c
Confidence            776 6899999994 3333322211          12347899999975778888888999999999865         4


Q ss_pred             ccEEE--eecCCceeEEEecCCCCcEEEEEe-------CCCcEEEEecCCCCceeeEec---CCCCceeEEEEEcCCCCe
Q 018293          252 SSFTL--HAHDKAVCTISYNPLVPNLLATGS-------TDKMVKLWDLSNNQPSCIASR---NPKAGAVFSVAFSEDSPF  319 (358)
Q Consensus       252 ~~~~~--~~~~~~i~~i~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~  319 (358)
                      .+..+  ..+...+..++++| + ..+.+.+       .+..|++||..+++.  +..+   ..+......++++|+|. 
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~~p~~ia~~~dG~-  304 (329)
T 3fvz_A          230 FVREIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEI--IDVFKPVRKHFDMPHDIVASEDGT-  304 (329)
T ss_dssp             EEEEECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCE--EEEECCSSSCCSSEEEEEECTTSE-
T ss_pred             EEEEEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeE--EEEEcCCCCccCCeeEEEECCCCC-
Confidence            45554  23456788999999 3 3444333       345899999998874  3333   34566789999999995 


Q ss_pred             EEEEEccCCeEEEEEccC
Q 018293          320 VLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       320 ~l~~~~~dg~i~vw~~~~  337 (358)
                      ++++...++.|++|++..
T Consensus       305 lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          305 VYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEESSSCCEEEEEEEE
T ss_pred             EEEEECCCCEEEEEeCCc
Confidence            899999999999999865

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=8.2e-18  Score=138.09  Aligned_cols=241  Identities=12%  Similarity=0.093  Sum_probs=164.4

Q ss_pred             ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecC-CCCCcE
Q 018293           59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNI  137 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~  137 (358)
                      ++++++++++++...++.|.+||.+ ++.......                     .....+|...+..+++. ++ +.+
T Consensus        35 v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~---------------------~~~~~~~~~~p~~i~~~~~~-g~l   91 (286)
T 1q7f_A           35 VAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGE---------------------CGKRDSQLLYPNRVAVVRNS-GDI   91 (286)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECC---------------------BSSSTTCBSSEEEEEEETTT-TEE
T ss_pred             EEECCCCCEEEEECCCCEEEEECCC-CcEEEEecc---------------------cCCCcccccCceEEEEEcCC-CeE
Confidence            3448899988888889999999976 222111000                     00112355678999994 55 556


Q ss_pred             EEEEEc-CCeEEEEECCCCceeeeec-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee--eecCCeee
Q 018293          138 LASASA-DKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAADVES  213 (358)
Q Consensus       138 l~s~~~-dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~  213 (358)
                      +++... ++.|.+|| .+++.+..+. .+...+.++++++++ +++++...++.|.+||... +......  .....+..
T Consensus        92 ~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~  168 (286)
T 1q7f_A           92 IVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNG  168 (286)
T ss_dssp             EEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEE
T ss_pred             EEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcEE
Confidence            665543 89999999 5677666664 234568899999998 7777777889999999643 2222111  12345889


Q ss_pred             EEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec--CCceeEEEecCCCCcEEEEEeCCC-cEEEEec
Q 018293          214 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGSTDK-MVKLWDL  290 (358)
Q Consensus       214 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~~l~~~~~dg-~i~i~d~  290 (358)
                      +++++++ +++++...++.|++||...          ..+..+..+  ...+..++++|++ +++++...++ .|.+||.
T Consensus       169 i~~~~~g-~l~v~~~~~~~i~~~~~~g----------~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          169 VVVNDKQ-EIFISDNRAHCVKVFNYEG----------QYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             EEECSSS-EEEEEEGGGTEEEEEETTC----------CEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECT
T ss_pred             EEECCCC-CEEEEECCCCEEEEEcCCC----------CEEEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECC
Confidence            9999964 4777777789999999743          334444332  3567899999998 7888877775 9999996


Q ss_pred             CCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          291 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       291 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      . ++.............+.+++++|+|+ ++++ +.|+.|++|++.....
T Consensus       237 ~-g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          237 D-GQLISALESKVKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             T-SCEEEEEEESSCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSCCCC
T ss_pred             C-CCEEEEEcccCCCCcceeEEECCCCc-EEEE-CCCCeEEEEEcccccc
Confidence            4 44222222222233478999999997 6776 5689999999866443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.82  E-value=2.8e-17  Score=151.86  Aligned_cols=290  Identities=10%  Similarity=0.017  Sum_probs=182.8

Q ss_pred             cCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCC-----eEE
Q 018293            4 NPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP-----AIE   78 (358)
Q Consensus         4 ~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-----~i~   78 (358)
                      .|+|..++....++....-.+|..+...+. ..+....+......    .+.-..++|||||++||.+..++     .|+
T Consensus        80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lld~~~l~~~~----~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~  154 (710)
T 2xdw_A           80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGE-ARVFLDPNILSDDG----TVALRGYAFSEDGEYFAYGLSASGSDWVTIK  154 (710)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEESSTTSC-CEEEECGGGGCTTS----CEEEEEEEECTTSSEEEEEEEETTCSCEEEE
T ss_pred             EEECCEEEEEEEcCCceEEEEEEEcCCCCC-cEEEECHHHhccCC----CEEEEEEEECCCCCEEEEEEcCCCCceEEEE
Confidence            478888888866553333366776654332 22222211111110    01111345699999999765433     899


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCe------------
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ------------  146 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~------------  146 (358)
                      +||+.+++.....                          +  ....+..++|+|+ ++.|+.++.++.            
T Consensus       155 v~d~~tg~~~~~~--------------------------~--~~~~~~~~~wspD-g~~l~~~~~~~~~~~~~~~~~~~~  205 (710)
T 2xdw_A          155 FMKVDGAKELPDV--------------------------L--ERVKFSCMAWTHD-GKGMFYNAYPQQDGKSDGTETSTN  205 (710)
T ss_dssp             EEETTTTEEEEEE--------------------------E--EEECSCCEEECTT-SSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             EEECCCCCCCccc--------------------------c--cCcccceEEEEeC-CCEEEEEEECCccccccccccccC
Confidence            9999875543210                          0  1123668999999 567777777765            


Q ss_pred             ----EEEEECCCCce----eeeecccccceeeEEEcCCCCcEEEEEeC-----CCcEEEEEccc------CC-Cccceee
Q 018293          147 ----VKIWDVAAGKC----NLTLEHHTDKVQAVAWNHHSPQILLSGSF-----DRSVVMKDARI------ST-HSGFKWA  206 (358)
Q Consensus       147 ----v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~~~~~~  206 (358)
                          |.+|++.+++.    +.....+...+..+.|+|++ ++|+.++.     +..|.+||+.+      +. .......
T Consensus       206 ~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~  284 (710)
T 2xdw_A          206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (710)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence                99999988763    22223345567899999999 66665543     56899999986      43 2332333


Q ss_pred             ecCCeeeEEEcCCCCCeEEEEecC---CeEEEEEcccCCCCCCCCCCCccEEEeecCC--ceeEEEecCCCCcEEEEEeC
Q 018293          207 VAADVESLAWDPHAEHSFVVSLED---GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGST  281 (358)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~l~~~~~  281 (358)
                      +...+.. .|+|++..+++.+..+   +.|.+||+.+...       .....+..|..  .+..+.|++++ .++++...
T Consensus       285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~  355 (710)
T 2xdw_A          285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-------SKWKVLVPEHEKDVLEWVACVRSN-FLVLCYLH  355 (710)
T ss_dssp             SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG-------GGCEEEECCCSSCEEEEEEEETTT-EEEEEEEE
T ss_pred             CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-------ccceeccCCCCCCeEEEEEEEcCC-EEEEEEEE
Confidence            3444443 4778666555555433   3799999876521       12345555543  68889998765 78888888


Q ss_pred             CCc--EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEc---cCCeEEEEEccCCC
Q 018293          282 DKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG---SKGKLEIWDTLSDA  339 (358)
Q Consensus       282 dg~--i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~vw~~~~~~  339 (358)
                      ++.  |.+||+.+++  ....+..+.+.+..+.++|++..++++.+   ..+.|+.||+.+++
T Consensus       356 ~g~~~l~~~~~~~g~--~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          356 DVKNTLQLHDLATGA--LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TTEEEEEEEETTTCC--EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCEEEEEEEECCCCC--EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            885  5667775665  34445556778999999999876555443   34789999998876

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.81  E-value=3e-17  Score=139.01  Aligned_cols=289  Identities=10%  Similarity=0.066  Sum_probs=177.1

Q ss_pred             CCCcEEEEEEecCC-CceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC----------C
Q 018293            5 PNDAVIVCARNEDD-VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS----------M   73 (358)
Q Consensus         5 p~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~----------~   73 (358)
                      |+++.+++.....+ ...-.+++|+...+   .+..  ......       .| .++|+|||++|+++.          .
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~---~~~~--~i~~g~-------~p-~i~~spdg~~lyv~~~~~~~~~~g~~   79 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNG---KFLG--MVPTAF-------NG-HVQVSNDGKKIYTMTTYHERITRGKR   79 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTC---CEEE--EEECCE-------EE-EEEECTTSSEEEEEEEEETTSSSSCE
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCC---eEEE--EecCCC-------CC-ceEECCCCCEEEEEEecccccccCCC
Confidence            35666666642110 11227889987665   2221  122221       22 345699999999876          3


Q ss_pred             CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc--CCeEEEEE
Q 018293           74 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVKIWD  151 (358)
Q Consensus        74 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--dg~v~iwd  151 (358)
                      ++.|.+||..+.+......+...                     ...+......++++|+ +++|+++..  +++|.+||
T Consensus        80 ~~~v~v~d~~t~~~~~~i~~~~~---------------------~~~~g~~p~~i~~spd-g~~l~v~n~~~~~~v~v~d  137 (361)
T 2oiz_A           80 SDVVEVWDADKLTFEKEISLPPK---------------------RVQGLNYDGLFRQTTD-GKFIVLQNASPATSIGIVD  137 (361)
T ss_dssp             EEEEEEEETTTCCEEEEEEECTT---------------------BCCBCCCGGGEEECTT-SSEEEEEEESSSEEEEEEE
T ss_pred             CCEEEEEECcCCcEEEEEEcCcc---------------------ccccCCCcceEEECCC-CCEEEEECCCCCCeEEEEE
Confidence            67899999876555443322110                     0012345678899999 557776654  68999999


Q ss_pred             CCCCceeee-ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-ce-----eeecCCeeeEEEcCCCCCeE
Q 018293          152 VAAGKCNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FK-----WAVAADVESLAWDPHAEHSF  224 (358)
Q Consensus       152 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~-----~~~~~~i~~~~~~~~~~~~~  224 (358)
                      +.+++.+.. +... . ...+.+.|++...+++.+.||.+.+|+........ ..     .........+.+.+++ ..+
T Consensus       138 ~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~  214 (361)
T 2oiz_A          138 VAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDK-DKA  214 (361)
T ss_dssp             TTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECS-SEE
T ss_pred             CCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccC-CEE
Confidence            999988877 6532 2 23356788776788899999999999986532211 00     0011111122334544 355


Q ss_pred             EEEecCCeEEEEEcccCCCCCCCCCCCccEEEee------c----CCceeEEEecCCCCcEEEEEe----------CCCc
Q 018293          225 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA------H----DKAVCTISYNPLVPNLLATGS----------TDKM  284 (358)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------~----~~~i~~i~~~~~~~~~l~~~~----------~dg~  284 (358)
                      +..+.++.+.++|+.....       .....+..      +    ......++++|++..++++..          ..+.
T Consensus       215 ~~~~~~~~v~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~  287 (361)
T 2oiz_A          215 HFVSYYGNVYSADFSGDEV-------KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAE  287 (361)
T ss_dssp             EEEBTTSEEEEEECSSSSC-------EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSE
T ss_pred             EEEeCCCeEEEEEecCCCc-------eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCce
Confidence            5666789999999875421       11111110      0    011123789999844444443          1347


Q ss_pred             EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC--Cccccc
Q 018293          285 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD--AGISNR  344 (358)
Q Consensus       285 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~  344 (358)
                      |.+||+.+.+  .+..+..+.  +.+++|+|+|++ |++++. +.|.+||..++  +.+.+.
T Consensus       288 v~viD~~t~~--~v~~i~~~~--p~~ia~spdg~~-l~v~n~-~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          288 IWVMDTKTKQ--RVARIPGRD--ALSMTIDQQRNL-MLTLDG-GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             EEEEETTTTE--EEEEEECTT--CCEEEEETTTTE-EEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred             EEEEECCCCc--EEEEEecCC--eeEEEECCCCCE-EEEeCC-CeEEEEECCCCcceeeEEe
Confidence            9999999987  445555554  889999999996 555555 99999999999  777654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.81  E-value=2e-17  Score=140.58  Aligned_cols=241  Identities=9%  Similarity=0.031  Sum_probs=150.3

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEecc-CCCCCceEeeceeecCCcccceeeecCCccccCCCce--EEecC-----
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEES-DGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF--MAVGS-----   72 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--l~~g~-----   72 (358)
                      ++++|+++.|+++..+      .+.+|+.. .+   .+...........+       +.++|+|+|++  ++++.     
T Consensus        45 ~a~spdg~~l~~~~~~------~v~~~~~~~~g---~~~~~~~~~~~g~~-------~~~~~spdg~~l~~~~~~~~~~~  108 (365)
T 1jof_A           45 MTFDHERKNIYGAAMK------KWSSFAVKSPT---EIVHEASHPIGGHP-------RANDADTNTRAIFLLAAKQPPYA  108 (365)
T ss_dssp             EEECTTSSEEEEEEBT------EEEEEEEEETT---EEEEEEEEECCSSG-------GGGCTTSCCEEEEEEECSSTTCC
T ss_pred             EEECCCCCEEEEEccc------eEEEEEECCCC---CEEEeeEeecCCCC-------ccEEECCCCCEEEEEEecCCcce
Confidence            4689999988877443      56666654 33   22111111111112       24566999994  55664     


Q ss_pred             --------CCCeEEEEEccc-ccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE-
Q 018293           73 --------MEPAIEIWDLDV-IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-  142 (358)
Q Consensus        73 --------~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-  142 (358)
                              .+|.+.+|+++. ++.......                       ....+...+.+++|+|+ +++++++. 
T Consensus       109 ~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~-----------------------~~~~~~~~~~~~~~spd-G~~l~~~~~  164 (365)
T 1jof_A          109 VYANPFYKFAGYGNVFSVSETGKLEKNVQN-----------------------YEYQENTGIHGMVFDPT-ETYLYSADL  164 (365)
T ss_dssp             EEEEEESSSCCEEEEEEECTTCCEEEEEEE-----------------------EECCTTCCEEEEEECTT-SSEEEEEET
T ss_pred             eccceeecCCceEEEEccCCCCcCcceEee-----------------------EEeCCCCcceEEEECCC-CCEEEEEcC
Confidence                    689999999963 221111000                       00124567899999999 45666655 


Q ss_pred             cCCeEEEEECC-CCcee--eeec--ccccceeeEEEcCCCCcEEEEEe-CCCcEEEEEccc--CCCcc---ceeee----
Q 018293          143 ADKQVKIWDVA-AGKCN--LTLE--HHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARI--STHSG---FKWAV----  207 (358)
Q Consensus       143 ~dg~v~iwd~~-~~~~~--~~~~--~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~~~---~~~~~----  207 (358)
                      .++.|.+||+. +++..  ..+.  .+...+..++|+|++ +++++++ .++.+.+|++..  ++...   .....    
T Consensus       165 ~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~  243 (365)
T 1jof_A          165 TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence            46899999998 67643  2333  235668999999999 6666665 478999998753  33211   01111    


Q ss_pred             ---cC------CeeeEE-EcCCCCCeEEEEec-CC-----eEEEEEccc-CCCCCCCCCCCccE---EEeecCCceeEEE
Q 018293          208 ---AA------DVESLA-WDPHAEHSFVVSLE-DG-----TIKGFDIRT-AKSDPDSTSQQSSF---TLHAHDKAVCTIS  267 (358)
Q Consensus       208 ---~~------~i~~~~-~~~~~~~~~~~~~~-dg-----~i~i~d~~~-~~~~~~~~~~~~~~---~~~~~~~~i~~i~  267 (358)
                         ..      .+..++ |+|++. +++++.. ++     .|.+|++.. +         ....   ....+......++
T Consensus       244 ~g~~~~~~~~~~~~~i~~~spdG~-~l~v~~~~~~~~~~~~i~v~~~~~~g---------~~~~~~~~~~~~~~~~~~~a  313 (365)
T 1jof_A          244 PDRDPETGKGLYRADVCALTFSGK-YMFASSRANKFELQGYIAGFKLRDCG---------SIEKQLFLSPTPTSGGHSNA  313 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSS-EEEEEEEESSTTSCCEEEEEEECTTS---------CEEEEEEEEECSSCCTTCCC
T ss_pred             CCcccccccccccccEEEECCCCC-EEEEECCCCCCCCCCeEEEEEECCCC---------CEEEeeeeeecCCCCcccce
Confidence               11      478899 999765 5555543 33     899999963 3         2221   1333445567899


Q ss_pred             ecC---CCCcEEEEEeC-CCcEEEEecCCC
Q 018293          268 YNP---LVPNLLATGST-DKMVKLWDLSNN  293 (358)
Q Consensus       268 ~~~---~~~~~l~~~~~-dg~i~i~d~~~~  293 (358)
                      |+|   ++ ++|++++. ++.|.+|++...
T Consensus       314 ~sp~~~dg-~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          314 VSPCPWSD-EWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEECTTCT-TEEEEECSSSCEEEEEEEETT
T ss_pred             ecCCCcCC-CEEEEEEcCCCeEEEEEEchh
Confidence            999   77 77887776 589999998765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.80  E-value=2.3e-17  Score=152.04  Aligned_cols=287  Identities=8%  Similarity=-0.035  Sum_probs=181.2

Q ss_pred             ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEE-----ecCCCCeE
Q 018293            3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA-----VGSMEPAI   77 (358)
Q Consensus         3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-----~g~~dg~i   77 (358)
                      .+|+|..++....++....-.+|..+...+. ...+...+......    .+.-..++|||||++||     .|+.+..|
T Consensus        75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~d~~~~a~~~----~~~~~~~~~SPDG~~la~~~~~~G~~~~~i  149 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQ-EKVLLDPNGWSKDG----TVSLGTWAVSWDGKKVAFAQKPNAADEAVL  149 (695)
T ss_dssp             CEEETTEEEEEEECTTCSSCEEEEEESTTSC-CEEEECGGGSSSSS----CEEEEEEEECTTSSEEEEEEEETTCSCCEE
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCCCC-cEEEEchHHhccCC----CEEEEEEEECCCCCEEEEEECCCCCceEEE
Confidence            4578888888877653334567777754432 23332221110000    01111445699999999     67777899


Q ss_pred             EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccE--EEEecCCCCCcEEEEEEcCCe---------
Q 018293           78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV--LGLAWNKEFRNILASASADKQ---------  146 (358)
Q Consensus        78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~l~s~~~dg~---------  146 (358)
                      ++||+.+++....                             .+...+  ..++|+|+ ++.|+.++.|..         
T Consensus       150 ~v~dl~tg~~~~~-----------------------------~~~~~~~~~~~~wspD-g~~l~~~~~d~~~~~~~~~~~  199 (695)
T 2bkl_A          150 HVIDVDSGEWSKV-----------------------------DVIEGGKYATPKWTPD-SKGFYYEWLPTDPSIKVDERP  199 (695)
T ss_dssp             EEEETTTCCBCSS-----------------------------CCBSCCTTCCCEECTT-SSEEEEEECCCCTTSCGGGGG
T ss_pred             EEEECCCCCCcCC-----------------------------cccCcccccceEEecC-CCEEEEEEecCCCCCccccCC
Confidence            9999987654311                             011112  67899999 567888887766         


Q ss_pred             ----EEEEECCCCc----eeeeecccccceeeEEEcCCCCcEEEEEeCCC----cEEEEEcccCCCccceeeecCCeeeE
Q 018293          147 ----VKIWDVAAGK----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR----SVVMKDARISTHSGFKWAVAADVESL  214 (358)
Q Consensus       147 ----v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~i~~~  214 (358)
                          |++|++.+++    ++.....+...+..+.|+|+| ++++.++.++    .|.++|..+++... .......+...
T Consensus       200 ~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~  277 (695)
T 2bkl_A          200 GYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDFRL-LVKGVGAKYEV  277 (695)
T ss_dssp             GGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSCEE-EEECSSCCEEE
T ss_pred             CCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCceEE-eecCCCceEEE
Confidence                9999998876    333334455678899999999 5566555444    56666654443322 34444555666


Q ss_pred             EEcCCCCCeEEEEe---cCCeEEEEEcccCCCCCCCCCCCccEEEeec--CCceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 018293          215 AWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGSTDKMVKLWD  289 (358)
Q Consensus       215 ~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d  289 (358)
                      .+ +++. +++.+.   .++.|.+||+.++..       .....+..+  ...+..++++ ++ .++++...|+..++|.
T Consensus       278 ~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~  346 (695)
T 2bkl_A          278 HA-WKDR-FYVLTDEGAPRQRVFEVDPAKPAR-------ASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRV  346 (695)
T ss_dssp             EE-ETTE-EEEEECTTCTTCEEEEEBTTBCSG-------GGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEE
T ss_pred             Ee-cCCc-EEEEECCCCCCCEEEEEeCCCCCc-------cCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEE
Confidence            66 5466 655554   358899999876521       112334333  4567888888 44 7888999999888876


Q ss_pred             cC-CCCceeeEecCCC-CceeEEEEEcCCCCeEEEEEc---cCCeEEEEEccCCC
Q 018293          290 LS-NNQPSCIASRNPK-AGAVFSVAFSEDSPFVLAIGG---SKGKLEIWDTLSDA  339 (358)
Q Consensus       290 ~~-~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~---~dg~i~vw~~~~~~  339 (358)
                      +. .++  ....+..+ .+.+..+.++|++..++++.+   ..+.|++||+.+++
T Consensus       347 ~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          347 ATLKGK--PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EETTCC--EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EeCCCC--eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            65 233  23344433 567888899999986554443   34689999998876

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=2.3e-17  Score=153.10  Aligned_cols=272  Identities=10%  Similarity=0.067  Sum_probs=166.1

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC-------
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-------   74 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-------   74 (358)
                      .++|++.+++.+  ++     .+++|+...+....++..+...    ...+.+  ..+.|||||++|+.++.+       
T Consensus        23 ~w~~dg~~~~~~--~~-----~i~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~Spdg~~l~~~~~~~~~~r~~   89 (740)
T 4a5s_A           23 RWISDHEYLYKQ--EN-----NILVFNAEYGNSSVFLENSTFD----EFGHSI--NDYSISPDGQFILLEYNYVKQWRHS   89 (740)
T ss_dssp             EECSSSEEEEEE--TT-----EEEEEETTTCCEEEEECTTTTT----TCCSCC--CEEEECTTSSEEEEEEEEEECSSSC
T ss_pred             EECCCCcEEEEc--CC-----cEEEEECCCCceEEEEechhhh----hhcccc--cceEECCCCCEEEEEECCeeeEEEc
Confidence            578999888776  55     7889998776433333333211    111110  013459999999998876       


Q ss_pred             --CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEEC
Q 018293           75 --PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  152 (358)
Q Consensus        75 --g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  152 (358)
                        +.+.+||+.+++..                            .+..|...+...+|||+ ++.||.+ .|+.|.+|++
T Consensus        90 ~~~~~~~~d~~~~~~~----------------------------~l~~~~~~~~~~~~SPd-G~~la~~-~~~~i~~~~~  139 (740)
T 4a5s_A           90 YTASYDIYDLNKRQLI----------------------------TEERIPNNTQWVTWSPV-GHKLAYV-WNNDIYVKIE  139 (740)
T ss_dssp             EEEEEEEEETTTTEEC----------------------------CSSCCCTTEEEEEECSS-TTCEEEE-ETTEEEEESS
T ss_pred             cceEEEEEECCCCcEE----------------------------EcccCCCcceeeEECCC-CCEEEEE-ECCeEEEEEC
Confidence              56779999865432                            23356778999999999 5567666 5789999999


Q ss_pred             CCCceeeee-cccccce-----------------eeEEEcCCCCcEEEEEeCCC--------------------------
Q 018293          153 AAGKCNLTL-EHHTDKV-----------------QAVAWNHHSPQILLSGSFDR--------------------------  188 (358)
Q Consensus       153 ~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~~l~~~~~dg--------------------------  188 (358)
                      .+++..+.. .++...+                 ..+.|+||| +.|+.++.|.                          
T Consensus       140 ~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~y  218 (740)
T 4a5s_A          140 PNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPY  218 (740)
T ss_dssp             TTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEEC
T ss_pred             CCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecC
Confidence            887654322 2222222                 358999999 6677664321                          


Q ss_pred             ----------cEEEEEccc---CCC--cccee------eecCCeeeEEEcCCCCCeEEEEec----CCeEEEEEcccCCC
Q 018293          189 ----------SVVMKDARI---STH--SGFKW------AVAADVESLAWDPHAEHSFVVSLE----DGTIKGFDIRTAKS  243 (358)
Q Consensus       189 ----------~i~i~d~~~---~~~--~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~----dg~i~i~d~~~~~~  243 (358)
                                .|.+||+.+   ++.  .....      .+...+..++|+|++. .++....    +..|.+||+.+++.
T Consensus       219 p~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~-~~~~~~~r~~~~~~i~~~d~~tg~~  297 (740)
T 4a5s_A          219 PKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER-ISLQWLRRIQNYSVMDICDYDESSG  297 (740)
T ss_dssp             CBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE-EEEEEEESSTTEEEEEEEEEETTTT
T ss_pred             CCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCe-EEEEEeCCCCCEEEEEEEECCCCcc
Confidence                      478888887   632  11111      1445688999999765 4444332    23799999988730


Q ss_pred             CCCCCCCCccEEE--eecCCcee-----EEEecCCCCcEEE-EEe-CCC--cEEEEecCCCCceeeEecCCCCceeEEEE
Q 018293          244 DPDSTSQQSSFTL--HAHDKAVC-----TISYNPLVPNLLA-TGS-TDK--MVKLWDLSNNQPSCIASRNPKAGAVFSVA  312 (358)
Q Consensus       244 ~~~~~~~~~~~~~--~~~~~~i~-----~i~~~~~~~~~l~-~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  312 (358)
                      ...   ......+  ..|...+.     .+.|+||| +.|+ ..+ .+|  .|++||+.+++..   .+......+..+.
T Consensus       298 ~~~---~~~~~~l~~~~~~~~v~~~~~~~p~fspDG-~~l~~~~s~~~G~~~l~~~~~~~~~~~---~lT~g~~~v~~~~  370 (740)
T 4a5s_A          298 RWN---CLVARQHIEMSTTGWVGRFRPSEPHFTLDG-NSFYKIISNEEGYRHICYFQIDKKDCT---FITKGTWEVIGIE  370 (740)
T ss_dssp             EEE---ECGGGCEEEECSSSCSSSSSCCCCEECTTS-SEEEEEEECTTSCEEEEEEETTCSSCE---ESCCSSSCEEEEE
T ss_pred             ccc---eeEEEEeeeccCCceEccCcCCCceEcCCC-CEEEEEEEcCCCceEEEEEECCCCceE---ecccCCEEEEEEE
Confidence            000   0011111  34554444     78899999 5444 554 344  4888898877632   3333344555544


Q ss_pred             EcCCCCeEEEEEcc
Q 018293          313 FSEDSPFVLAIGGS  326 (358)
Q Consensus       313 ~~~~~~~~l~~~~~  326 (358)
                      . ++++.+++++..
T Consensus       371 ~-~d~~~i~f~~~~  383 (740)
T 4a5s_A          371 A-LTSDYLYYISNE  383 (740)
T ss_dssp             E-ECSSEEEEEESC
T ss_pred             E-EeCCEEEEEEec
Confidence            2 446667776665

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.79  E-value=7.5e-17  Score=131.12  Aligned_cols=240  Identities=10%  Similarity=0.058  Sum_probs=162.8

Q ss_pred             CccccCCCceEE-ecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCc
Q 018293           58 PLKDREKGNFMA-VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  136 (358)
Q Consensus        58 ~~~~s~~~~~l~-~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  136 (358)
                      .++++++|++++ +...++.|.+|+..+.....                           ....+...+.+++++++ +.
T Consensus        28 ~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---------------------------~~~~~~~~p~~i~~~~~-g~   79 (270)
T 1rwi_B           28 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---------------------------LPFNGLYQPQGLAVDGA-GT   79 (270)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEECC-----EE---------------------------CCCCSCCSCCCEEECTT-CC
T ss_pred             ceEECCCCCEEEEccCCCCcEEEecCCCcccce---------------------------EeeCCcCCcceeEECCC-CC
Confidence            445589999777 65778999999875322110                           00123346788999998 55


Q ss_pred             EEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEE
Q 018293          137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW  216 (358)
Q Consensus       137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  216 (358)
                      ++++.. ++.|.+||................+..+++.+++ .++++...++.|.+|+..+.............+..+++
T Consensus        80 l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~  157 (270)
T 1rwi_B           80 VYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV  157 (270)
T ss_dssp             EEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred             EEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence            555555 8899999987654332222233568899999988 77777777889999976544332211222346788999


Q ss_pred             cCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce
Q 018293          217 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  296 (358)
Q Consensus       217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  296 (358)
                      ++++ +++++...++.|.+||....         ........+...+.+++++++| .++++...++.|.+||...... 
T Consensus       158 ~~~g-~l~v~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~-  225 (270)
T 1rwi_B          158 DNSG-NVYVTDTDNNRVVKLEAESN---------NQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS-  225 (270)
T ss_dssp             CTTC-CEEEEEGGGTEEEEECTTTC---------CEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCC-
T ss_pred             eCCC-CEEEEECCCCEEEEEecCCC---------ceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcc-
Confidence            9955 47777667889999998764         2111112223567899999988 7777777788999999876542 


Q ss_pred             eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                       ......+...+.+++++++|+ ++++...++.|+++++...+..
T Consensus       226 -~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          226 -TVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             -EECCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGGGSC
T ss_pred             -eeeccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCcccc
Confidence             222222335688999999998 7888889999999998776543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.79  E-value=2.4e-16  Score=133.43  Aligned_cols=270  Identities=14%  Similarity=0.134  Sum_probs=169.8

Q ss_pred             CcccCCCcEEEEEEecC-----CCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCC--
Q 018293            1 MTINPNDAVIVCARNED-----DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM--   73 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--   73 (358)
                      +.|+|+++.+.++....     ....-.+.+|+....   ...  .............-.|..++++|||++|+++..  
T Consensus        55 i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~---~~~--~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~  129 (361)
T 2oiz_A           55 VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL---TFE--KEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASP  129 (361)
T ss_dssp             EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC---CEE--EEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESS
T ss_pred             eEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC---cEE--EEEEcCccccccCCCcceEEECCCCCEEEEECCCC
Confidence            47899999999986410     001226788887653   111  111111000000011334566999999998864  


Q ss_pred             CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECC
Q 018293           74 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  153 (358)
Q Consensus        74 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  153 (358)
                      ++.|.+||+.+.+.....                          + .+. ....+.+.|++...+++.+.||.+.+|+..
T Consensus       130 ~~~v~v~d~~~~~~~~~~--------------------------i-~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~  181 (361)
T 2oiz_A          130 ATSIGIVDVAKGDYVEDV--------------------------T-AAA-GCWSVIPQPNRPRSFMTICGDGGLLTINLG  181 (361)
T ss_dssp             SEEEEEEETTTTEEEEEE--------------------------G-GGT-TEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred             CCeEEEEECCCCcEEEEE--------------------------e-cCC-CcceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence            689999999864332210                          0 011 122255677766788899999999999986


Q ss_pred             C-Cceee------eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce-ee-----------ecCCeeeE
Q 018293          154 A-GKCNL------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WA-----------VAADVESL  214 (358)
Q Consensus       154 ~-~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~-----------~~~~i~~~  214 (358)
                      . ++...      .+.....++ .+.+++++ ..++..+.++.+.++|+......... ..           .......+
T Consensus       182 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~  259 (361)
T 2oiz_A          182 EDGKVASQSRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV  259 (361)
T ss_dssp             TTSSEEEEEECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred             CCCcEeeeccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence            5 55441      222222222 33445666 55666778899999998755422110 00           01222347


Q ss_pred             EEcCCCCCeEEEEe----------cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc
Q 018293          215 AWDPHAEHSFVVSL----------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  284 (358)
Q Consensus       215 ~~~~~~~~~~~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  284 (358)
                      +++|+++..+++..          ..+.|.+||+.+.         +.+..+..+.  ..+++|+|++ ++|++++. +.
T Consensus       260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---------~~v~~i~~~~--p~~ia~spdg-~~l~v~n~-~~  326 (361)
T 2oiz_A          260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---------QRVARIPGRD--ALSMTIDQQR-NLMLTLDG-GN  326 (361)
T ss_dssp             EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---------EEEEEEECTT--CCEEEEETTT-TEEEEECS-SC
T ss_pred             EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---------cEEEEEecCC--eeEEEECCCC-CEEEEeCC-Ce
Confidence            89997664444433          1358999999887         7777787776  8999999999 68888776 99


Q ss_pred             EEEEecCCCCceeeEecCCCCceeEEEEEcCCCC
Q 018293          285 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP  318 (358)
Q Consensus       285 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  318 (358)
                      |.+||..++++..+..+.........++++|+|+
T Consensus       327 v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          327 VNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            9999999994335666555566778899999986

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=9.8e-17  Score=147.32  Aligned_cols=199  Identities=8%  Similarity=0.007  Sum_probs=133.6

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcC----------CeEEEEECCC------Cceeeeec-ccccceeeEEEcCCCCcEEEE
Q 018293          121 HTDSVLGLAWNKEFRNILASASAD----------KQVKIWDVAA------GKCNLTLE-HHTDKVQAVAWNHHSPQILLS  183 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~d----------g~v~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~  183 (358)
                      |...+..++|+|+ ++.|++++.+          ..|.+||+.+      ++. ..+. .+...+..++|+||| +.|+.
T Consensus       128 ~~~~~~~~~~spD-g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG-~~la~  204 (662)
T 3azo_A          128 GGLRWADPVLLPE-RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDG-RQAVW  204 (662)
T ss_dssp             TCEEEEEEEEETT-TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTS-SEEEE
T ss_pred             CCccccCcEECCC-CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCC-CEEEE
Confidence            6678899999999 5678777776          5899999988      554 3444 556778899999999 77776


Q ss_pred             EeCC--------CcEEEEEcc-cC---CCccceeeecCCeeeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCC
Q 018293          184 GSFD--------RSVVMKDAR-IS---THSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTS  249 (358)
Q Consensus       184 ~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~  249 (358)
                      ++.+        ..|.+||+. ++   +.......+...+..+.|+|++. +++++..++  .|.+||+.++        
T Consensus       205 ~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~--------  275 (662)
T 3azo_A          205 LAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATG--------  275 (662)
T ss_dssp             EEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTC--------
T ss_pred             EECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCC--------
Confidence            6644        479999998 45   22222223357889999999776 888888888  5666665443        


Q ss_pred             CCccEEEeecCCc---------eeEEEecCCCCcEEEEEeCCCcEEEE--ecCCCCceeeEecCCCCceeEEEEEcCCCC
Q 018293          250 QQSSFTLHAHDKA---------VCTISYNPLVPNLLATGSTDKMVKLW--DLSNNQPSCIASRNPKAGAVFSVAFSEDSP  318 (358)
Q Consensus       250 ~~~~~~~~~~~~~---------i~~i~~~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  318 (358)
                       . ...+..+...         +..++|+|++ .++++++. +.+++|  |+.+++   ...+..+...+..+. ++++.
T Consensus       276 -~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~-s~~~~  347 (662)
T 3azo_A          276 -A-ATQLCRREEEFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPESGE---LVDAAGPWTEWAATL-TVSGT  347 (662)
T ss_dssp             -C-EEESSCCSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTTTE---EEECCSSCCEEEEEE-EEETT
T ss_pred             -c-eeecccccccccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCCCc---EEEecCCCCeEEEEE-ecCCC
Confidence             1 1122212111         4578888887 78889888 999999  554454   455666777777661 34444


Q ss_pred             eE-EEEEccCC--eEEEEEccCCC
Q 018293          319 FV-LAIGGSKG--KLEIWDTLSDA  339 (358)
Q Consensus       319 ~~-l~~~~~dg--~i~vw~~~~~~  339 (358)
                      .+ +++++.+.  .|.+||+.+++
T Consensus       348 ~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          348 RAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             EEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEEEEcCCCCCCEEEEEECCCCc
Confidence            33 44444454  45556665655

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.77  E-value=1.2e-17  Score=143.60  Aligned_cols=235  Identities=9%  Similarity=0.019  Sum_probs=149.6

Q ss_pred             CccccCCCceEEecCCC---CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293           58 PLKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF  134 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  134 (358)
                      .++|||||++|+.....   ..|.+||+.+++...                           ...++......+.|+|+ 
T Consensus        40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~---------------------------l~~~~~~~~~~~~~spd-   91 (396)
T 3c5m_A           40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ---------------------------LTEGKGDNTFGGFISTD-   91 (396)
T ss_dssp             SCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE---------------------------CCCSSCBCTTTCEECTT-
T ss_pred             cCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE---------------------------eecCCCCccccceECCC-
Confidence            45679999998776432   468888876533211                           01112222334789999 


Q ss_pred             CcEEEEEEcCCeEEEEECCCCceeeeecccccceee-------------------EEEcCCCCcEEEEE-----eCCCcE
Q 018293          135 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQA-------------------VAWNHHSPQILLSG-----SFDRSV  190 (358)
Q Consensus       135 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-----~~dg~i  190 (358)
                      ++.|+.++.++.|.+||+.+++.......+......                   +.|+|++ +.++..     ..+..|
T Consensus        92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l  170 (396)
T 3c5m_A           92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRL  170 (396)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEE
T ss_pred             CCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceE
Confidence            668888888899999999988765554433332222                   3467777 444333     456789


Q ss_pred             EEEEcccCCCccceeeecCCeeeEEEcC-CCCCeEEEEecC------CeEEEEEcccCCCCCCCCCCCccEEEeec--CC
Q 018293          191 VMKDARISTHSGFKWAVAADVESLAWDP-HAEHSFVVSLED------GTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DK  261 (358)
Q Consensus       191 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~  261 (358)
                      .+||+.+++... .......+..+.|+| ++. .++..+.+      ..|.+||+....          ...+..+  ..
T Consensus       171 ~~~d~~~g~~~~-~~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~----------~~~l~~~~~~~  238 (396)
T 3c5m_A          171 IKVDIETGELEV-IHQDTAWLGHPIYRPFDDS-TVGFCHEGPHDLVDARMWLVNEDGSN----------VRKIKEHAEGE  238 (396)
T ss_dssp             EEEETTTCCEEE-EEEESSCEEEEEEETTEEE-EEEEEECSCSSSCSCCCEEEETTSCC----------CEESSCCCTTE
T ss_pred             EEEECCCCcEEe-eccCCcccccceECCCCCC-EEEEEecCCCCCCCceEEEEECCCCc----------eeEeeccCCCc
Confidence            999998766543 335667789999999 554 44444333      368888876541          2222222  23


Q ss_pred             ceeEEEecCCCCcEEEEEeCC-----CcEEEEecCCCCceeeEecCCCCceeEEEEEcC-CCCeEEEEEc----------
Q 018293          262 AVCTISYNPLVPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE-DSPFVLAIGG----------  325 (358)
Q Consensus       262 ~i~~i~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~----------  325 (358)
                      .+..++|+|++ +.|+..+.+     +.|++||+.+++...+.....    .. +.|+| +|+. ++.++          
T Consensus       239 ~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~-l~~~~~~~p~~~~~~  311 (396)
T 3c5m_A          239 SCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSL-MVGDGCDAPVDVADA  311 (396)
T ss_dssp             EEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSE-EEEEECCC-------
T ss_pred             cccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCce-EEEecCCcceeeccc
Confidence            57889999999 555444333     349999998887544433332    22 88999 9995 55443          


Q ss_pred             ------cCCeEEEEEccCCCc
Q 018293          326 ------SKGKLEIWDTLSDAG  340 (358)
Q Consensus       326 ------~dg~i~vw~~~~~~~  340 (358)
                            .++.|++||+.+++.
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          312 DSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             ---CCCCCCEEEEEETTTTBC
T ss_pred             cccccCCCCcEEEEecccCce
Confidence                  347899999987764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.76  E-value=1.8e-15  Score=126.84  Aligned_cols=226  Identities=8%  Similarity=0.022  Sum_probs=148.6

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      +|+++|++++++..++.|.+||..+++...                           ....+...+.+++++|+ +++++
T Consensus        51 ~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~---------------------------~~~~~~~~~~~i~~~~d-g~l~v  102 (333)
T 2dg1_A           51 NFDRQGQLFLLDVFEGNIFKINPETKEIKR---------------------------PFVSHKANPAAIKIHKD-GRLFV  102 (333)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEE---------------------------EEECSSSSEEEEEECTT-SCEEE
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCCcEEE---------------------------EeeCCCCCcceEEECCC-CcEEE
Confidence            448899988888889999999986533211                           01124567999999999 56777


Q ss_pred             EEEcC----CeEEEEECCCCceeeeec--ccccceeeEEEcCCCCcEEEEEeC------CCcEEEEEcccCCCccceeee
Q 018293          140 SASAD----KQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSF------DRSVVMKDARISTHSGFKWAV  207 (358)
Q Consensus       140 s~~~d----g~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~  207 (358)
                      +...+    +.|.+||.++++....+.  .....+.+++++|++ .++++...      .+.|..+|..+++... ....
T Consensus       103 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~  180 (333)
T 2dg1_A          103 CYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQN  180 (333)
T ss_dssp             EECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEE
T ss_pred             EeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEE-eecC
Confidence            66665    689999988776543332  234578999999998 66666543      3556666655433322 2233


Q ss_pred             cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEE--------EeecCCceeEEEecCCCCcEEEEE
Q 018293          208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT--------LHAHDKAVCTISYNPLVPNLLATG  279 (358)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~i~~~~~~~~~l~~~  279 (358)
                      ...+..++|+|++..++++...++.|.+||+....        .....        +..+ ..+..+++++++ +++++.
T Consensus       181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g--------~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~l~v~~  250 (333)
T 2dg1_A          181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDG--------VTIQPFGATIPYYFTGH-EGPDSCCIDSDD-NLYVAM  250 (333)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS--------SSEEEEEEEEEEECCSS-SEEEEEEEBTTC-CEEEEE
T ss_pred             CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCC--------cCcccccceEEEecCCC-CCCCceEECCCC-CEEEEE
Confidence            45678899999765455666678899999996421        11111        1111 367889999998 777777


Q ss_pred             eCCCcEEEEecCCCCceeeEecCC----CCceeEEEEEcCCCCeEEEEEcc
Q 018293          280 STDKMVKLWDLSNNQPSCIASRNP----KAGAVFSVAFSEDSPFVLAIGGS  326 (358)
Q Consensus       280 ~~dg~i~i~d~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~  326 (358)
                      ..++.|.+||.. ++.........    |...+.+++|+|++..++++...
T Consensus       251 ~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          251 YGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             ETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             cCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            778899999984 44222222221    11268899999998765554443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.76  E-value=6.1e-16  Score=130.54  Aligned_cols=256  Identities=11%  Similarity=0.093  Sum_probs=156.1

Q ss_pred             CCcEEEEEEecC----CCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC---Ce--
Q 018293            6 NDAVIVCARNED----DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME---PA--   76 (358)
Q Consensus         6 ~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~--   76 (358)
                      +|+.++......    +...-.+|+++...+....+         .....       +.|||||++||..+.+   +.  
T Consensus        23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---------~~~~~-------~~~SpDg~~la~~~~~~~~~~~~   86 (347)
T 2gop_A           23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---------ENATM-------PRISPDGKKIAFMRANEEKKVSE   86 (347)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE---------ESCEE-------EEECTTSSEEEEEEEETTTTEEE
T ss_pred             CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc---------ccCCC-------eEECCCCCEEEEEEeccCCCcce
Confidence            677776653321    11245788888876421111         11223       3459999999887654   33  


Q ss_pred             EEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc-------------
Q 018293           77 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-------------  143 (358)
Q Consensus        77 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-------------  143 (358)
                      |.+|++.+++...                            +..+.. +..++|+|++ +.|+.++.             
T Consensus        87 l~~~~~~~g~~~~----------------------------l~~~~~-~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           87 IWVADLETLSSKK----------------------------ILEAKN-IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             EEEEETTTTEEEE----------------------------EEEESE-EEEEEECTTS-SEEEEEEECCCC---------
T ss_pred             EEEEECCCCceEE----------------------------EEcCCC-ccceeECCCC-CEEEEEEccCCCcCCcEEEcc
Confidence            6667765432211                            111223 8999999994 56666653             


Q ss_pred             --------------CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC-------cEEEEEcccCCCcc
Q 018293          144 --------------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-------SVVMKDARISTHSG  202 (358)
Q Consensus       144 --------------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~  202 (358)
                                    ...|.+||+.+++.+..+.. . .+..+.|+|++  +++++..++       ...+|.+.+++. .
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~  211 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKE-E  211 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEE-E
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCce-E
Confidence                          25799999998876455554 4 78899999998  666665542       345555443322 2


Q ss_pred             ceeeecCCeeeEEEcCCCCCeEEEEecC-------CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeE-EEecCCCCc
Q 018293          203 FKWAVAADVESLAWDPHAEHSFVVSLED-------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT-ISYNPLVPN  274 (358)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~-i~~~~~~~~  274 (358)
                      ..... ..+..  ++|++..+++.+..+       ..|.+||  ++         ........+...+.. +.|+ ++  
T Consensus       212 ~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~---------~~~~l~~~~~~~~~~~~~~s-dg--  274 (347)
T 2gop_A          212 KMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GK---------EVMGILDEVDRGVGQAKIKD-GK--  274 (347)
T ss_dssp             EEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SS---------CEEESSTTCCSEEEEEEEET-TE--
T ss_pred             EeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CC---------ceEeccccCCcccCCccEEc-Cc--
Confidence            22233 33443  388766444444332       4688887  33         222222345667776 8998 65  


Q ss_pred             EEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeE-EEEEcc
Q 018293          275 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKL-EIWDTL  336 (358)
Q Consensus       275 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i-~vw~~~  336 (358)
                      ++++++.++.+++| +.+++.   ..+..+...|.+++|+|  . ++++++.++.. .+|.+.
T Consensus       275 ~~~~~~~~~~~~l~-~~~g~~---~~~~~~~~~v~~~~~s~--~-~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          275 VYFTLFEEGSVNLY-IWDGEI---KPIAKGRHWIMGFDVDE--I-VVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEEEETTEEEEE-EESSSE---EEEECSSSEEEEEEESS--S-EEEEEECSSSCCEEEEES
T ss_pred             EEEEEecCCcEEEE-EcCCce---EEEecCCCeEEeeeeeC--c-EEEEEcCCCChHHheEeC
Confidence            88888999999999 875542   22333467899999999  4 56666666654 777776

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.75  E-value=8.7e-16  Score=128.52  Aligned_cols=251  Identities=10%  Similarity=0.079  Sum_probs=164.8

Q ss_pred             CcccCCCcEEEEEEecCCC-------------------ceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccc
Q 018293            1 MTINPNDAVIVCARNEDDV-------------------SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKD   61 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   61 (358)
                      |+++|+|+++++...+.-.                   ..-.+++|+...+   .+........-..|.       .+++
T Consensus        29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~p~-------gia~   98 (329)
T 3fvz_A           29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA---EILQSSGKNLFYLPH-------GLSI   98 (329)
T ss_dssp             EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC---CEEEEECTTTCSSEE-------EEEE
T ss_pred             EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC---eEEeccCCCccCCce-------EEEE
Confidence            4689999998877544200                   0015788887654   222111000111222       3455


Q ss_pred             cCCCceEEecCCCCeEEEEEccccc-CcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVID-EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      +++|+++++...++.|++|+.+... .+..   ++..               .....-.++-.....++++|+++.++++
T Consensus        99 d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~---~~~~---------------~~~g~~~~~~~~P~~ia~~~~~g~lyv~  160 (329)
T 3fvz_A           99 DTDGNYWVTDVALHQVFKLDPHSKEGPLLI---LGRS---------------MQPGSDQNHFCQPTDVAVEPSTGAVFVS  160 (329)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTCSSCCSEE---ESBT---------------TBCCCSTTCCSSEEEEEECTTTCCEEEE
T ss_pred             CCCCCEEEEECCCCEEEEEeCCCCeEEEEE---eccc---------------CCCCCCccccCCCcEEEEeCCCCeEEEE
Confidence            8999999999999999999986431 1111   0000               0000012355678999999943777777


Q ss_pred             EE-cCCeEEEEECCCCceeeeeccc----------ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee--ee
Q 018293          141 AS-ADKQVKIWDVAAGKCNLTLEHH----------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AV  207 (358)
Q Consensus       141 ~~-~dg~v~iwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~  207 (358)
                      .+ .++.|++|| .+++.+..+...          -.....++++|++..++++...++.|++||..+++......  ..
T Consensus       161 d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~  239 (329)
T 3fvz_A          161 DGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF  239 (329)
T ss_dssp             ECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT
T ss_pred             eCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc
Confidence            76 689999999 567776666422          23478999999844888888889999999998665544221  23


Q ss_pred             cCCeeeEEEcCCCCCeEEEE-------ecCCeEEEEEcccCCCCCCCCCCCccEEE---eecCCceeEEEecCCCCcEEE
Q 018293          208 AADVESLAWDPHAEHSFVVS-------LEDGTIKGFDIRTAKSDPDSTSQQSSFTL---HAHDKAVCTISYNPLVPNLLA  277 (358)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~~-------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~l~  277 (358)
                      ...+..++++|  +..+.+.       ..+..|++||..++         ..+..+   ..+.....+++++|+| .+++
T Consensus       240 ~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g---------~~~~~~~~~~~~~~~p~~ia~~~dG-~lyv  307 (329)
T 3fvz_A          240 GRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSG---------EIIDVFKPVRKHFDMPHDIVASEDG-TVYI  307 (329)
T ss_dssp             TTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTC---------CEEEEECCSSSCCSSEEEEEECTTS-EEEE
T ss_pred             CCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCC---------eEEEEEcCCCCccCCeeEEEECCCC-CEEE
Confidence            45678888988  2222222       23458999999876         555555   3556678999999998 8889


Q ss_pred             EEeCCCcEEEEecCC
Q 018293          278 TGSTDKMVKLWDLSN  292 (358)
Q Consensus       278 ~~~~dg~i~i~d~~~  292 (358)
                      +...++.|++|++..
T Consensus       308 ad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          308 GDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EESSSCCEEEEEEEE
T ss_pred             EECCCCEEEEEeCCc
Confidence            988999999999864

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.73  E-value=1.4e-15  Score=125.45  Aligned_cols=230  Identities=10%  Similarity=0.052  Sum_probs=153.4

Q ss_pred             ccccCCCc-eEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           59 LKDREKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        59 ~~~s~~~~-~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      +.|+|+|+ +++++..++.|..|+..+.  ..                           .+..+...+.+++++++ +.+
T Consensus        33 ~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---------------------------~~~~~~~~~~~l~~~~d-g~l   82 (296)
T 3e5z_A           33 PVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---------------------------PEMHPSHHQNGHCLNKQ-GHL   82 (296)
T ss_dssp             EEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---------------------------EEESSCSSEEEEEECTT-CCE
T ss_pred             CeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---------------------------EEECCCCCcceeeECCC-CcE
Confidence            44589998 7888888999999998753  11                           12235567899999999 557


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeeccc----ccceeeEEEcCCCCcEEEEEeC-----------------CCcEEEEEcc
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEHH----TDKVQAVAWNHHSPQILLSGSF-----------------DRSVVMKDAR  196 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~  196 (358)
                      +++...++.|.+||..+++........    ...+..++++|+| +++++.+.                 .+.|..++..
T Consensus        83 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~  161 (296)
T 3e5z_A           83 IACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD  161 (296)
T ss_dssp             EEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred             EEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC
Confidence            776666789999999888754433221    2346789999999 77776321                 2355555544


Q ss_pred             cCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCc---cEEEeecCCceeEEEecCCCC
Q 018293          197 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQS---SFTLHAHDKAVCTISYNPLVP  273 (358)
Q Consensus       197 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~i~~i~~~~~~~  273 (358)
                       + ..............++|+|++. .+++.+.++.|.+||+....        ..   ...+..+...+.+++++++| 
T Consensus       162 -g-~~~~~~~~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g--------~~~~~~~~~~~~~~~p~~i~~d~~G-  229 (296)
T 3e5z_A          162 -G-TLSAPIRDRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNARG--------ETEYQGVHFTVEPGKTDGLRVDAGG-  229 (296)
T ss_dssp             -S-CEEEEECCCSSEEEEEECTTSC-EEEEETTTTEEEEEEECSSS--------CEEEEEEEECCSSSCCCSEEEBTTS-
T ss_pred             -C-CEEEeecCCCCCccEEECCCCC-EEEEeCCCCeEEEEEECCCC--------cCcCCCeEeeCCCCCCCeEEECCCC-
Confidence             2 2222334445678999999765 55777788999999997320        21   11223345567789999998 


Q ss_pred             cEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEE-cCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          274 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF-SEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       274 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      +++++.  ++.|.+||.. ++  .+..+..+.. +.+++| .|+++. |++++.+ .+.-++..+.+
T Consensus       230 ~l~v~~--~~~v~~~~~~-g~--~~~~~~~~~~-~~~~~f~~~d~~~-L~v~t~~-~l~~~~~~~~~  288 (296)
T 3e5z_A          230 LIWASA--GDGVHVLTPD-GD--ELGRVLTPQT-TSNLCFGGPEGRT-LYMTVST-EFWSIETNVRG  288 (296)
T ss_dssp             CEEEEE--TTEEEEECTT-SC--EEEEEECSSC-CCEEEEESTTSCE-EEEEETT-EEEEEECSCCB
T ss_pred             CEEEEc--CCeEEEECCC-CC--EEEEEECCCC-ceeEEEECCCCCE-EEEEcCC-eEEEEEccccc
Confidence            655555  7889999986 44  3344444555 889999 588886 5545554 45556665544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.73  E-value=2e-15  Score=126.68  Aligned_cols=239  Identities=9%  Similarity=0.034  Sum_probs=161.2

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      ++.|++++..++..+.++.++.|.-..                              ...+..+...+.+++|+++ +.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~-g~l   58 (333)
T 2dg1_A           10 TLFYSGKSNSAVPIISESELQTITAEP------------------------------WLEISKKGLQLEGLNFDRQ-GQL   58 (333)
T ss_dssp             BCCSCGGGGCSSCCCCGGGSCEEECEE------------------------------EEEEESSCCCEEEEEECTT-SCE
T ss_pred             eeeecCCccceeEEeecccCcccccce------------------------------eEEEeccCccccCcEECCC-CCE
Confidence            445688888888878888899883221                              1122245567799999998 567


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCC----CcEEEEEcccCCCcccee--eecCCe
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD----RSVVMKDARISTHSGFKW--AVAADV  211 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~--~~~~~i  211 (358)
                      ++++..++.|.+||.++++.......+...+.++++++++ +++++...+    +.|.+||..+........  .....+
T Consensus        59 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  137 (333)
T 2dg1_A           59 FLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI  137 (333)
T ss_dssp             EEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred             EEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence            7788889999999998887655443456789999999998 777776666    689999988765432111  233568


Q ss_pred             eeEEEcCCCCCeEEEEec------CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcE
Q 018293          212 ESLAWDPHAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  285 (358)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i  285 (358)
                      ..++++|++ +++++...      .+.|..+|....         . ...+..+...+..++|+|++..++++.+.++.|
T Consensus       138 ~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~---------~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i  206 (333)
T 2dg1_A          138 DDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFR---------T-VTPIIQNISVANGIALSTDEKVLWVTETTANRL  206 (333)
T ss_dssp             EEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSC---------C-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred             cceEECCCC-CEEEEeccccccCCCceEEEEeCCCC---------E-EEEeecCCCcccceEECCCCCEEEEEeCCCCeE
Confidence            899999965 45555443      245666665432         1 222323334578999999983344555667899


Q ss_pred             EEEecCC-CCcee------eEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          286 KLWDLSN-NQPSC------IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       286 ~i~d~~~-~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      .+||+.+ +....      ......+ ..+..++++++|. ++++...++.|.+||. +++.+.
T Consensus       207 ~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~-~g~~~~  267 (333)
T 2dg1_A          207 HRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNK-RGYPIG  267 (333)
T ss_dssp             EEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECT-TSCEEE
T ss_pred             EEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECC-CCCEEE
Confidence            9999964 32211      1112222 4678899999998 5776667789999998 455443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.73  E-value=3e-16  Score=144.11  Aligned_cols=245  Identities=10%  Similarity=-0.022  Sum_probs=147.0

Q ss_pred             cCCCcE-EEEEEecCCCceEEEEEEecc--C-CCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC-----
Q 018293            4 NPNDAV-IVCARNEDDVSHLEVYILEES--D-GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-----   74 (358)
Q Consensus         4 ~p~~~~-l~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----   74 (358)
                      ||+|+. |+.+...    ..+||+++..  . +....+.............       +++|||||++|++++.+     
T Consensus        87 SPDg~~~la~~~~~----~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~-------~~~~spDg~~l~~~~~~~~~~~  155 (662)
T 3azo_A           87 RPAGGPLLVFTHFG----DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWA-------DPVLLPERGEVWCMAEEFTGEG  155 (662)
T ss_dssp             CSSSSCEEEEEBTT----TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEE-------EEEEETTTTEEEEEEEEECSSS
T ss_pred             ecCCCeEEEEEECC----CCeEEEEcCCCCCCCCCEeccCCccCCCCcccc-------CcEECCCCCEEEEEEecccCCC
Confidence            599998 7766332    2368888865  2 2111111100000011112       34559999999998876     


Q ss_pred             -----CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccC-CCcccEEEEecCCCCCcEEEEEEcC----
Q 018293           75 -----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKG-SHTDSVLGLAWNKEFRNILASASAD----  144 (358)
Q Consensus        75 -----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d----  144 (358)
                           ..|++||+.+.....                      ......+. .+...+..++|+|+ +++|+.++.+    
T Consensus       156 ~~~~~~~i~~~~~~~~~~~~----------------------~~~~~~l~~~~~~~~~~~~~SpD-G~~la~~~~~~~~~  212 (662)
T 3azo_A          156 PSDVRRFLAAVPLDGSAAAD----------------------RSAVRELSDDAHRFVTGPRLSPD-GRQAVWLAWDHPRM  212 (662)
T ss_dssp             TTCEEEEEEEEETTSTTTTC----------------------GGGSEESSCSCSSEECCCEECTT-SSEEEEEEECTTCC
T ss_pred             CCCceeEEEEEECCCCcccc----------------------CCceeEEEecCCCcccCceECCC-CCEEEEEECCCCCC
Confidence                 589999987510000                      00011222 34567888999999 5677777655    


Q ss_pred             ----CeEEEEECC-CC---ceeeeecccccceeeEEEcCCCCcEEEEEeCCC--cEEEEEcccCCCccceeeecC-----
Q 018293          145 ----KQVKIWDVA-AG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAA-----  209 (358)
Q Consensus       145 ----g~v~iwd~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~-----  209 (358)
                          ..|.+||+. ++   +.......+...+..+.|+|+| +++++++.++  .|.+||+.+++.......+..     
T Consensus       213 ~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~  291 (662)
T 3azo_A          213 PWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPL  291 (662)
T ss_dssp             TTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCC
T ss_pred             CCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCceeecccccccccCcc
Confidence                379999998 56   4444444557889999999999 5888888888  566666545443221111111     


Q ss_pred             ---CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEE-EecCCCCcEEEE-EeCCC-
Q 018293          210 ---DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI-SYNPLVPNLLAT-GSTDK-  283 (358)
Q Consensus       210 ---~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i-~~~~~~~~~l~~-~~~dg-  283 (358)
                         .+..++|+|+ +.+++++.. +.+++|.+...        ......+..+...+..+ .++  +..++++ ++.+. 
T Consensus       292 w~~~~~~~~~~~~-~~~~~~~~~-~~~~l~~~d~~--------~~~~~~l~~~~~~~~~~~s~~--~~~~~~~~~~~~~~  359 (662)
T 3azo_A          292 WTPGMRWFAPLAN-GLIAVVHGK-GAAVLGILDPE--------SGELVDAAGPWTEWAATLTVS--GTRAVGVAASPRTA  359 (662)
T ss_dssp             CSTTCCSEEECTT-SCEEEEEBS-SSCEEEEEETT--------TTEEEECCSSCCEEEEEEEEE--TTEEEEEEEETTEE
T ss_pred             ccccCceEeEeCC-CEEEEEEEc-CccEEEEEECC--------CCcEEEecCCCCeEEEEEecC--CCEEEEEEcCCCCC
Confidence               1567888884 558888888 99999955432        12345666676777766 444  4344444 44444 


Q ss_pred             -cEEEEecCCCCc
Q 018293          284 -MVKLWDLSNNQP  295 (358)
Q Consensus       284 -~i~i~d~~~~~~  295 (358)
                       .|.++|+.+++.
T Consensus       360 ~~i~~~d~~~g~~  372 (662)
T 3azo_A          360 YEVVELDTVTGRA  372 (662)
T ss_dssp             EEEEEEETTTCCE
T ss_pred             CEEEEEECCCCce
Confidence             455667767663

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.73  E-value=3.4e-15  Score=122.44  Aligned_cols=237  Identities=12%  Similarity=0.113  Sum_probs=153.5

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeecee--ecCCcccceeeecCCccc-cCCCceEEecCC-CCe
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI--IIPAFPLCMAWLDCPLKD-REKGNFMAVGSM-EPA   76 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-s~~~~~l~~g~~-dg~   76 (358)
                      |+++|+++++++...++     .|++|+.... ....+.....  .....+.       .+++ .++++++++... ++.
T Consensus        35 v~~~~~g~l~v~~~~~~-----~i~~~d~~g~-~~~~~~~~~~~~~~~~~p~-------~i~~~~~~g~l~v~~~~~~~~  101 (286)
T 1q7f_A           35 VAVNAQNDIIVADTNNH-----RIQIFDKEGR-FKFQFGECGKRDSQLLYPN-------RVAVVRNSGDIIVTERSPTHQ  101 (286)
T ss_dssp             EEECTTCCEEEEEGGGT-----EEEEECTTSC-EEEEECCBSSSTTCBSSEE-------EEEEETTTTEEEEEECGGGCE
T ss_pred             EEECCCCCEEEEECCCC-----EEEEECCCCc-EEEEecccCCCcccccCce-------EEEEEcCCCeEEEEcCCCCCE
Confidence            35788998877765555     7888886532 1111110000  0001122       3344 467777777643 789


Q ss_pred             EEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc
Q 018293           77 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK  156 (358)
Q Consensus        77 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  156 (358)
                      |++||.+ ++....                          ....+...+.+++++|+ ++++++...++.|.+||.. ++
T Consensus       102 i~~~d~~-g~~~~~--------------------------~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g~  152 (286)
T 1q7f_A          102 IQIYNQY-GQFVRK--------------------------FGATILQHPRGVTVDNK-GRIIVVECKVMRVIIFDQN-GN  152 (286)
T ss_dssp             EEEECTT-SCEEEE--------------------------ECTTTCSCEEEEEECTT-SCEEEEETTTTEEEEECTT-SC
T ss_pred             EEEECCC-CcEEEE--------------------------ecCccCCCceEEEEeCC-CCEEEEECCCCEEEEEcCC-CC
Confidence            9999943 222110                          00124456899999999 5677777778999999954 55


Q ss_pred             eeeeec--ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee--cCCeeeEEEcCCCCCeEEEEecCC-
Q 018293          157 CNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV--AADVESLAWDPHAEHSFVVSLEDG-  231 (358)
Q Consensus       157 ~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~dg-  231 (358)
                      .+..+.  .+...+..+++++++ +++++...++.|.+||.... ........  ...+..+++++++ +++++...++ 
T Consensus       153 ~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~  229 (286)
T 1q7f_A          153 VLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNG-EILIADNHNNF  229 (286)
T ss_dssp             EEEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSC
T ss_pred             EEEEeCCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCC-EEEEEccCCccCCCcEEEECCCC-CEEEEeCCCCE
Confidence            555553  344568999999998 77777778999999997532 22211111  2468899999965 5777777775 


Q ss_pred             eEEEEEcccCCCCCCCCCCCccEEEeecC--CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293          232 TIKGFDIRTAKSDPDSTSQQSSFTLHAHD--KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~  294 (358)
                      .|.+||.. +         ..+..+..+.  ..+.+++++|++ +++++ +.++.|++|++....
T Consensus       230 ~i~~~~~~-g---------~~~~~~~~~~~~~~~~~i~~~~~g-~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          230 NLTIFTQD-G---------QLISALESKVKHAQCFDVALMDDG-SVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEEEECTT-S---------CEEEEEEESSCCSCEEEEEEETTT-EEEEE-ETTTEEEEEECSCCC
T ss_pred             EEEEECCC-C---------CEEEEEcccCCCCcceeEEECCCC-cEEEE-CCCCeEEEEEccccc
Confidence            99999964 2         4444554443  246799999988 66666 679999999986654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.73  E-value=7.3e-15  Score=130.65  Aligned_cols=266  Identities=12%  Similarity=0.061  Sum_probs=173.1

Q ss_pred             EEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcc--cccCcCceeecCCcccc
Q 018293           23 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD--VIDEVQPHVILGGIDEE  100 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~  100 (358)
                      .++++|....   .+..  .......+-       .+.|+|||+++++++.|+.|.+||+.  +.+....          
T Consensus       178 ~V~viD~~t~---~v~~--~i~~g~~p~-------~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~----------  235 (567)
T 1qks_A          178 QIALIDGSTY---EIKT--VLDTGYAVH-------ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE----------  235 (567)
T ss_dssp             EEEEEETTTC---CEEE--EEECSSCEE-------EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE----------
T ss_pred             eEEEEECCCC---eEEE--EEeCCCCcc-------ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE----------
Confidence            8888998765   2221  111211121       34569999999999999999999985  3322211          


Q ss_pred             cccccccCCceeccccccCCCcccEEEEecC----CCCCcEEEEEEcCCeEEEEECCCCceeeeecc----------ccc
Q 018293          101 KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN----KEFRNILASASADKQVKIWDVAAGKCNLTLEH----------HTD  166 (358)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----------~~~  166 (358)
                                       +.. ......++|+    |+|..++++...+++|.++|..+.+.+..+..          |..
T Consensus       236 -----------------i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~  297 (567)
T 1qks_A          236 -----------------IKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE  297 (567)
T ss_dssp             -----------------EEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC
T ss_pred             -----------------Eec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCC
Confidence                             111 1235789999    68555555566679999999999988877642          112


Q ss_pred             -ceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc-eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCC
Q 018293          167 -KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD  244 (358)
Q Consensus       167 -~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~  244 (358)
                       .+..+..+++++.+++....+|.|.++|....+.... ..........+.|+|++..++++...++.|.++|..++   
T Consensus       298 ~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---  374 (567)
T 1qks_A          298 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---  374 (567)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---
T ss_pred             CceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---
Confidence             5778888998867777777889999999876542221 12234456788999977655666667899999999987   


Q ss_pred             CCCCCCCccEEEee-----cCCceeEEEecCCCCcEEEEEe-CCCcEEEEecCCCC-----ceeeEecCCCCceeEEEEE
Q 018293          245 PDSTSQQSSFTLHA-----HDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQ-----PSCIASRNPKAGAVFSVAF  313 (358)
Q Consensus       245 ~~~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-----~~~~~~~~~~~~~v~~~~~  313 (358)
                            +....+..     |.+.-..+ ++|+++.+.+++. .++.|.++|..+.+     ...+..+......-..+..
T Consensus       375 ------kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~  447 (567)
T 1qks_A          375 ------KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKT  447 (567)
T ss_dssp             ------EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC
T ss_pred             ------cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEe
Confidence                  44444432     32211122 5787545555554 46899999998722     2234444333233344778


Q ss_pred             cCCCCeEEEEEcc------CCeEEEEEccCC
Q 018293          314 SEDSPFVLAIGGS------KGKLEIWDTLSD  338 (358)
Q Consensus       314 ~~~~~~~l~~~~~------dg~i~vw~~~~~  338 (358)
                      +|+++++++....      .+.|.++|+.+.
T Consensus       448 ~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          448 HPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             CTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             CCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            9999986664421      358999999876

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.72  E-value=2.3e-15  Score=125.85  Aligned_cols=235  Identities=9%  Similarity=0.016  Sum_probs=160.2

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      +++++++...++.|.+||..+++.....                            ........++++++ +.++++...
T Consensus        53 ~~~lyv~~~~~~~v~viD~~t~~~~~~i----------------------------~~~~~p~~i~~~~~-g~lyv~~~~  103 (328)
T 3dsm_A           53 DGIGWIVVNNSHVIFAIDINTFKEVGRI----------------------------TGFTSPRYIHFLSD-EKAYVTQIW  103 (328)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTCCEEEEE----------------------------ECCSSEEEEEEEET-TEEEEEEBS
T ss_pred             CCEEEEEEcCCCEEEEEECcccEEEEEc----------------------------CCCCCCcEEEEeCC-CeEEEEECC
Confidence            4556666667899999999875543321                            12356788999888 455555448


Q ss_pred             CCeEEEEECCCCceeeeecccc-----cceeeEEEcCCCCcEEEEEe-CCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHT-----DKVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHSGFKWAVAADVESLAWD  217 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  217 (358)
                      ++.|.+||..+++....+....     .....+++ .++ .++++.. .++.|.++|+.+.+.... .........++++
T Consensus       104 ~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t~~~~~~-i~~g~~p~~i~~~  180 (328)
T 3dsm_A          104 DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTETDKVVDE-LTIGIQPTSLVMD  180 (328)
T ss_dssp             CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEETTTTEEEEE-EECSSCBCCCEEC
T ss_pred             CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEECCCCeEEEE-EEcCCCccceEEc
Confidence            8999999999998877765332     14567777 333 5444443 488999999988765442 2334556789999


Q ss_pred             CCCCCeEEEEecC----------CeEEEEEcccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcEEEEEeCCCcEE
Q 018293          218 PHAEHSFVVSLED----------GTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVK  286 (358)
Q Consensus       218 ~~~~~~~~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~  286 (358)
                      |++. +++++..+          +.|.++|..+.         +....+... ......++++|++ ..|+++..  .|.
T Consensus       181 ~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~---------~v~~~~~~~~g~~p~~la~~~d~-~~lyv~~~--~v~  247 (328)
T 3dsm_A          181 KYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETF---------TVEKQFKFKLGDWPSEVQLNGTR-DTLYWINN--DIW  247 (328)
T ss_dssp             TTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTT---------EEEEEEECCTTCCCEEEEECTTS-CEEEEESS--SEE
T ss_pred             CCCC-EEEEECCCccCCccccCCceEEEEECCCC---------eEEEEEecCCCCCceeEEEecCC-CEEEEEcc--EEE
Confidence            9654 55555443          78999999876         444444322 2357899999988 66666544  899


Q ss_pred             EEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEE----ccCCeEEEEEccCCCccccc
Q 018293          287 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG----GSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       287 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----~~dg~i~vw~~~~~~~~~~~  344 (358)
                      +||..+++................++++|++..++++.    ..++.|.+||.. ++.+.+.
T Consensus       248 ~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          248 RMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             EEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             EEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence            99998877422111222245688999999655578877    678999999998 7766543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.72  E-value=8.6e-14  Score=114.64  Aligned_cols=274  Identities=10%  Similarity=0.064  Sum_probs=173.9

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      .+.|+|+++++....+     .++.|+.. +   .+...........+..       ++++++|+++++...++.|..|+
T Consensus        21 ~~d~~g~l~v~~~~~~-----~v~~~d~~-~---~~~~~~~~~~~~~~~~-------i~~~~~g~l~v~~~~~~~i~~~~   84 (299)
T 2z2n_A           21 TVSDKGKVWITQHKAN-----MISCINLD-G---KITEYPLPTPDAKVMC-------LTISSDGEVWFTENAANKIGRIT   84 (299)
T ss_dssp             EECTTSCEEEEETTTT-----EEEEECTT-C---CEEEEECSSTTCCEEE-------EEECTTSCEEEEETTTTEEEEEC
T ss_pred             EECCCCCEEEEecCCC-----cEEEEcCC-C---CeEEecCCcccCceee-------EEECCCCCEEEeCCCCCeEEEEC
Confidence            4678888777664344     77788766 3   2211110001122223       34478999888877788999998


Q ss_pred             cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee-
Q 018293           82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT-  160 (358)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-  160 (358)
                      .+. . ....                         .+......+.++++.++ +.++++...++.|..||. +++.... 
T Consensus        85 ~~g-~-~~~~-------------------------~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~-~g~~~~~~  135 (299)
T 2z2n_A           85 KKG-I-IKEY-------------------------TLPNPDSAPYGITEGPN-GDIWFTEMNGNRIGRITD-DGKIREYE  135 (299)
T ss_dssp             TTS-C-EEEE-------------------------ECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred             CCC-c-EEEE-------------------------eCCCcCCCceeeEECCC-CCEEEEecCCceEEEECC-CCCEEEec
Confidence            751 1 1100                         01123457889999998 567777667889999998 5544322 


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc-eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR  239 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~  239 (358)
                      .......+..+++.+++ .++++...++.|..||. +++.... .......+..++++++ +.++++...++.|..||. 
T Consensus       136 ~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-  211 (299)
T 2z2n_A          136 LPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGND-DALWFVEIIGNKIGRITT-  211 (299)
T ss_dssp             CSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-
T ss_pred             CCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCC-CCEEEEccCCceEEEECC-
Confidence            22344568899999998 77777767789999998 4443221 1112345788999996 446666656889999998 


Q ss_pred             cCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCe
Q 018293          240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF  319 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  319 (358)
                      ++.        ........+...+.++++++++ +++++...++.|..||. +++. .......+...+.++++ +++. 
T Consensus       212 ~g~--------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~-  278 (299)
T 2z2n_A          212 SGE--------ITEFKIPTPNARPHAITAGAGI-DLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGET-  278 (299)
T ss_dssp             TCC--------EEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSC-
T ss_pred             CCc--------EEEEECCCCCCCceeEEECCCC-CEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCC-
Confidence            441        1112223344678899999988 66666556789999998 3432 22333444567899999 8888 


Q ss_pred             EEEEEccCCeEEEEEccCC
Q 018293          320 VLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       320 ~l~~~~~dg~i~vw~~~~~  338 (358)
                      ++++.. .+.+..++..++
T Consensus       279 l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          279 IWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             EEEEET-TTEEEEEEEC--
T ss_pred             EEEEec-CCcEEEEEcCcc
Confidence            566544 567888887664

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.71  E-value=1.3e-14  Score=120.47  Aligned_cols=244  Identities=10%  Similarity=0.067  Sum_probs=159.1

Q ss_pred             cccCCCceEEe-------cCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCC
Q 018293           60 KDREKGNFMAV-------GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK  132 (358)
Q Consensus        60 ~~s~~~~~l~~-------g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  132 (358)
                      +|+++|+++++       +..++.|.+||..+++... ...                      ....++...+.++++++
T Consensus        24 ~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~----------------------~~~~~~~~~~~~i~~~~   80 (314)
T 1pjx_A           24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICK----------------------PEVNGYGGIPAGCQCDR   80 (314)
T ss_dssp             EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EEC----------------------CEETTEECCEEEEEECS
T ss_pred             eECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEe----------------------cccCCCCCCCceEEEec
Confidence            34788988888       6778999999976543211 000                      00112456789999999


Q ss_pred             CCCcEEEEEEcCCeEEEEECCCCceeee-ecc----cccceeeEEEcCCCCcEEEEEeCC---------------CcEEE
Q 018293          133 EFRNILASASADKQVKIWDVAAGKCNLT-LEH----HTDKVQAVAWNHHSPQILLSGSFD---------------RSVVM  192 (358)
Q Consensus       133 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~l~~~~~d---------------g~i~i  192 (358)
                      ++++++ .++..+.|.+||.+ ++.... ...    ....+.++++.+++ +++++...+               +.|..
T Consensus        81 ~~g~l~-v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~  157 (314)
T 1pjx_A           81 DANQLF-VADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYC  157 (314)
T ss_dssp             SSSEEE-EEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred             CCCcEE-EEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEE
Confidence            833344 44445579999988 765433 221    12457899999998 777666554               56777


Q ss_pred             EEcccCCCccceeeecCCeeeEEEc----CCCCCeEEEEecCCeEEEEEccc-CCCCCCCCCCCccEEEeecC-CceeEE
Q 018293          193 KDARISTHSGFKWAVAADVESLAWD----PHAEHSFVVSLEDGTIKGFDIRT-AKSDPDSTSQQSSFTLHAHD-KAVCTI  266 (358)
Q Consensus       193 ~d~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~-~~i~~i  266 (358)
                      +|.. ++. ............++|+    |++..++++...++.|.+||... +....    ......+..+. .....+
T Consensus       158 ~~~~-g~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~----~~~~~~~~~~~~~~p~~i  231 (314)
T 1pjx_A          158 FTTD-GQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN----KKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             ECTT-SCE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE----EEEEEECCCCSSCEEEEE
T ss_pred             ECCC-CCE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc----ceEEEECCCCCCCCCCce
Confidence            7764 332 2223334556889999    86554555556789999999862 21000    01122223333 567889


Q ss_pred             EecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          267 SYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       267 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      +++++| +++++...++.|.+||..+++...  .+..+...+.+++|+|+++.++++...++.|..|++...
T Consensus       232 ~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~--~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          232 DFDEDN-NLLVANWGSSHIEVFGPDGGQPKM--RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEBTTC-CEEEEEETTTEEEEECTTCBSCSE--EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EECCCC-CEEEEEcCCCEEEEEcCCCCcEeE--EEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            999988 777777778899999998665332  233344678999999999866777777789999998753

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.70  E-value=1e-14  Score=118.48  Aligned_cols=213  Identities=11%  Similarity=0.006  Sum_probs=154.1

Q ss_pred             CCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCc-ccEEEEecCCCCCcEEEEE
Q 018293           63 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT-DSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        63 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~  141 (358)
                      ..+++|++++.++.|++||..+++.+....                           .+. ..+.++.++|+ +++++  
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~---------------------------~~~~~~~~~~~~~pd-G~ilv--   52 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYP---------------------------LEKGWECNSVAATKA-GEILF--   52 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEE---------------------------CCTTCCCCEEEECTT-SCEEE--
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeC---------------------------CCccCCCcCeEECCC-CCEEE--
Confidence            356899999999999999997766544321                           232 45788899999 56777  


Q ss_pred             EcCCeEEEEECCCCceeeeeccc-ccceeeEEEcCCCCcEEEEEeC-CCcEEEEEcccCCCcccee------eecCCeee
Q 018293          142 SADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGFKW------AVAADVES  213 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~------~~~~~i~~  213 (358)
                      +.++.|..||. +++.+..+..+ ...+.++.+.+++ +++++.+. ++.+..+|. +++.+....      ........
T Consensus        53 s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~  129 (276)
T 3no2_A           53 SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQ  129 (276)
T ss_dssp             ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSC
T ss_pred             eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccC
Confidence            45788999998 89999888764 3578899999999 78888776 777877775 333322111      11123455


Q ss_pred             EEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293          214 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  293 (358)
Q Consensus       214 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~  293 (358)
                      ++..++ ++++++...++.|..||.. +         +.+..+... ....++...+++ ++++++..++.|..+|..++
T Consensus       130 v~~~~~-G~~lv~~~~~~~v~~~d~~-G---------~~~w~~~~~-~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG  196 (276)
T 3no2_A          130 INKNKK-GNYLVPLFATSEVREIAPN-G---------QLLNSVKLS-GTPFSSAFLDNG-DCLVACGDAHCFVQLNLESN  196 (276)
T ss_dssp             CEECTT-SCEEEEETTTTEEEEECTT-S---------CEEEEEECS-SCCCEEEECTTS-CEEEECBTTSEEEEECTTTC
T ss_pred             ceECCC-CCEEEEecCCCEEEEECCC-C---------CEEEEEECC-CCccceeEcCCC-CEEEEeCCCCeEEEEeCcCC
Confidence            677885 5588888899999999987 6         666666654 345667788887 88888888889999999988


Q ss_pred             CceeeEecCCC------CceeEEEEEcCCCCeEEEEE
Q 018293          294 QPSCIASRNPK------AGAVFSVAFSEDSPFVLAIG  324 (358)
Q Consensus       294 ~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~  324 (358)
                      +.  +..+..+      -..+..++..++|. ++++.
T Consensus       197 ~~--~w~~~~~~~~~~~l~~~~~~~~~~~G~-i~v~~  230 (276)
T 3no2_A          197 RI--VRRVNANDIEGVQLFFVAQLFPLQNGG-LYICN  230 (276)
T ss_dssp             CE--EEEEEGGGSBSCCCSEEEEEEECTTSC-EEEEE
T ss_pred             cE--EEEecCCCCCCccccccccceEcCCCC-EEEEe
Confidence            84  3333221      23478889999998 56655

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.70  E-value=2.6e-14  Score=132.15  Aligned_cols=246  Identities=8%  Similarity=-0.010  Sum_probs=159.9

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCe-----
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA-----   76 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~-----   76 (358)
                      .+||+|+.|+.+...+......+++++...+........+   .  ....+       .|+|||+.|+.++.++.     
T Consensus       131 ~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~---~--~~~~~-------~wspDg~~l~~~~~~~~~~~~~  198 (710)
T 2xdw_A          131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---V--KFSCM-------AWTHDGKGMFYNAYPQQDGKSD  198 (710)
T ss_dssp             EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---E--CSCCE-------EECTTSSEEEEEECCCCSSCCS
T ss_pred             EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC---c--ccceE-------EEEeCCCEEEEEEECCcccccc
Confidence            6899999999987765334458899998775221111111   0  12234       44999999998887765     


Q ss_pred             -----------EEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc--
Q 018293           77 -----------IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--  143 (358)
Q Consensus        77 -----------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--  143 (358)
                                 |++|++.++.....                       .+.....|...+..+.|+|+| ++|+.++.  
T Consensus       199 ~~~~~~~~~~~v~~~~l~t~~~~~~-----------------------~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~  254 (710)
T 2xdw_A          199 GTETSTNLHQKLYYHVLGTDQSEDI-----------------------LCAEFPDEPKWMGGAELSDDG-RYVLLSIREG  254 (710)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCE-----------------------EEECCTTCTTCEEEEEECTTS-CEEEEEEECS
T ss_pred             ccccccCCCCEEEEEECCCCcccce-----------------------EEeccCCCCeEEEEEEEcCCC-CEEEEEEEcc
Confidence                       99999875432111                       111122355668899999995 56665554  


Q ss_pred             ---CCeEEEEECCC------Cc-eeeeecccccceeeEEEcCCCCcEEEEEeCC---CcEEEEEcccCCC--ccceeeec
Q 018293          144 ---DKQVKIWDVAA------GK-CNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTH--SGFKWAVA  208 (358)
Q Consensus       144 ---dg~v~iwd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~--~~~~~~~~  208 (358)
                         +..|.+||+.+      +. ....+..+...+.. .|++++..+++.+..+   +.|.+||+.++..  ......+.
T Consensus       255 ~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~  333 (710)
T 2xdw_A          255 CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH  333 (710)
T ss_dssp             SSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred             CCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC
Confidence               56899999986      43 35555555555554 4888884444444433   3699999887642  12233333


Q ss_pred             C--CeeeEEEcCCCCCeEEEEecCCe--EEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC---
Q 018293          209 A--DVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---  281 (358)
Q Consensus       209 ~--~i~~~~~~~~~~~~~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---  281 (358)
                      .  .+..++|++ ++.++++...++.  |.+||+.++         .....+..+...+..+.++|++..++++.+.   
T Consensus       334 ~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g---------~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~  403 (710)
T 2xdw_A          334 EKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATG---------ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLS  403 (710)
T ss_dssp             SSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTC---------CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSC
T ss_pred             CCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCC---------CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCC
Confidence            3  577889986 5567888888885  555666444         4456666677788999999988445555443   


Q ss_pred             CCcEEEEecCCCC
Q 018293          282 DKMVKLWDLSNNQ  294 (358)
Q Consensus       282 dg~i~i~d~~~~~  294 (358)
                      .+.|+.||+.+++
T Consensus       404 P~~i~~~d~~tg~  416 (710)
T 2xdw_A          404 PGIIYHCDLTKEE  416 (710)
T ss_dssp             CCEEEEEETTSSS
T ss_pred             CCEEEEEECCCCc
Confidence            4679999998876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.70  E-value=5e-15  Score=124.91  Aligned_cols=187  Identities=11%  Similarity=0.080  Sum_probs=124.2

Q ss_pred             ccEEEEecCCCCCcEEEEEEcC---C--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeC-----------
Q 018293          123 DSVLGLAWNKEFRNILASASAD---K--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-----------  186 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~d---g--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------  186 (358)
                      ..+..++|+|+ ++.|+.++.+   +  .|.+||+.+++....... .. +..+.|+|++ +.|+.++.           
T Consensus        59 ~~~~~~~~SpD-g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg-~~l~~~~~~~~~~~~~~~~  134 (347)
T 2gop_A           59 ENATMPRISPD-GKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDS-RKLLIVGFKRREDEDFIFE  134 (347)
T ss_dssp             ESCEEEEECTT-SSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTS-SEEEEEEECCCC-------
T ss_pred             ccCCCeEECCC-CCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCC-CEEEEEEccCCCcCCcEEE
Confidence            45788999999 5566666543   3  488889888776554443 34 8999999999 66666553           


Q ss_pred             ----------------CCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCC-------eEEEEEcccCCC
Q 018293          187 ----------------DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG-------TIKGFDIRTAKS  243 (358)
Q Consensus       187 ----------------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg-------~i~i~d~~~~~~  243 (358)
                                      ...|.+||+.+++....... . .+..+.|+|++  +++++..++       ...+|.+.++  
T Consensus       135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~--  208 (347)
T 2gop_A          135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDG--  208 (347)
T ss_dssp             --CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETT--
T ss_pred             cccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCC--
Confidence                            25789999987765222333 4 88899999965  676665542       3455555432  


Q ss_pred             CCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC--------CcEEEEecCCCCceeeEecCCCCceeEE-EEEc
Q 018293          244 DPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD--------KMVKLWDLSNNQPSCIASRNPKAGAVFS-VAFS  314 (358)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~v~~-~~~~  314 (358)
                              ....+..+ ..+..+  +|+| +.|+.++.+        ..|.+||  +++  .......+...+.. +.|+
T Consensus       209 --------~~~~l~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d--~~~--~~~l~~~~~~~~~~~~~~s  272 (347)
T 2gop_A          209 --------KEEKMFEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD--GKE--VMGILDEVDRGVGQAKIKD  272 (347)
T ss_dssp             --------EEEEEEEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--SSC--EEESSTTCCSEEEEEEEET
T ss_pred             --------ceEEeccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--CCc--eEeccccCCcccCCccEEc
Confidence                    23334334 445544  8998 556555533        3688888  444  23334456677886 8999


Q ss_pred             CCCCeEEEEEccCCeEEEEEccCCC
Q 018293          315 EDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       315 ~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                       ++  ++++++.++.+++| +.+++
T Consensus       273 -dg--~~~~~~~~~~~~l~-~~~g~  293 (347)
T 2gop_A          273 -GK--VYFTLFEEGSVNLY-IWDGE  293 (347)
T ss_dssp             -TE--EEEEEEETTEEEEE-EESSS
T ss_pred             -Cc--EEEEEecCCcEEEE-EcCCc
Confidence             77  68888999999999 87544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.69  E-value=2.2e-14  Score=133.19  Aligned_cols=289  Identities=8%  Similarity=0.028  Sum_probs=172.4

Q ss_pred             ccCCCcEEEEEEecCCCceEEEEEEeccC--CCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC-----C
Q 018293            3 INPNDAVIVCARNEDDVSHLEVYILEESD--GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-----P   75 (358)
Q Consensus         3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g   75 (358)
                      .+|+|..++....++....-.+|..+...  +.....+...+......    .+....++|||||++||.+..+     .
T Consensus       114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~----~~~~~~~~~SPDG~~la~~~~~~G~e~~  189 (741)
T 1yr2_A          114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDG----ATALDAWAASDDGRLLAYSVQDGGSDWR  189 (741)
T ss_dssp             CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC--------EEEEEEEECTTSSEEEEEEEETTCSEE
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCC----CEEEEeEEECCCCCEEEEEEcCCCCceE
Confidence            35889998888776533345678777641  22223322221111100    0111244569999999876543     4


Q ss_pred             eEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCe---------
Q 018293           76 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ---------  146 (358)
Q Consensus        76 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~---------  146 (358)
                      .|++||+.+++....                            ..+...+..++|+|+ . .|+.++.++.         
T Consensus       190 ~i~v~dl~tg~~~~~----------------------------~~~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          190 TVKFVGVADGKPLAD----------------------------ELKWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             EEEEEETTTCCEEEE----------------------------EEEEEESCCCEESTT-S-EEEEEECCCC--------C
T ss_pred             EEEEEECCCCCCCCc----------------------------cCCCceeccEEEECC-C-EEEEEEecCcccccccccC
Confidence            699999987654221                            001122357899999 5 5555555543         


Q ss_pred             -----EEEEECCCCce----eeeecccccceeeEEEcCCCCcEEEEEeCC-----CcEEEEEcccC--CCccceeeecCC
Q 018293          147 -----VKIWDVAAGKC----NLTLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARIS--THSGFKWAVAAD  210 (358)
Q Consensus       147 -----v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~--~~~~~~~~~~~~  210 (358)
                           |.+|++.++..    +.....+...+..+.|+|+| ++++..+.+     ..|.+||+.++  +...........
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                 89999977652    22222333458899999999 666665543     38999999876  312223333334


Q ss_pred             eeeEEEcCCCCCeEEEEec----CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEE
Q 018293          211 VESLAWDPHAEHSFVVSLE----DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK  286 (358)
Q Consensus       211 i~~~~~~~~~~~~~~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~  286 (358)
                      ..... .|+++ .++..+.    ++.|.+||+.+..  .     .....+..+...+..+.+. ++ .++++...|+..+
T Consensus       319 ~~~~~-~~dg~-~l~~~s~~~~~~~~l~~~d~~~~~--~-----~~~~l~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~  387 (741)
T 1yr2_A          319 QWDFV-DGVGD-QLWFVSGDGAPLKKIVRVDLSGST--P-----RFDTVVPESKDNLESVGIA-GN-RLFASYIHDAKSQ  387 (741)
T ss_dssp             CEEEE-EEETT-EEEEEECTTCTTCEEEEEECSSSS--C-----EEEEEECCCSSEEEEEEEE-BT-EEEEEEEETTEEE
T ss_pred             eEEEE-eccCC-EEEEEECCCCCCCEEEEEeCCCCc--c-----ccEEEecCCCCeEEEEEEE-CC-EEEEEEEECCEEE
Confidence            44443 46555 4544443    4569999987631  0     1222334445556677777 33 7888888899877


Q ss_pred             EEecC-CCCceeeEecCC-CCceeEEEEEcCCCCeEEEEEc---cCCeEEEEEccCCC
Q 018293          287 LWDLS-NNQPSCIASRNP-KAGAVFSVAFSEDSPFVLAIGG---SKGKLEIWDTLSDA  339 (358)
Q Consensus       287 i~d~~-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~---~dg~i~vw~~~~~~  339 (358)
                      +|.+. +++  ....+.. ..+.+..+.++|++..++++.+   ..+.|++||+.+++
T Consensus       388 l~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          388 VLAFDLDGK--PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEETTSC--EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEeCCCC--ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            77554 233  2333332 3567889999999876554443   34789999998766

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.69  E-value=3.5e-13  Score=114.17  Aligned_cols=287  Identities=13%  Similarity=0.044  Sum_probs=175.8

Q ss_pred             cCCCcEEEEEEe-cCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC----------
Q 018293            4 NPNDAVIVCARN-EDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS----------   72 (358)
Q Consensus         4 ~p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~----------   72 (358)
                      .|+++.+.+... ..+ ....+++|+....   .+.  ......       ..+ .+.+||||++|+++.          
T Consensus        29 ~~~~~~~yv~~~~~~~-~~~~v~v~D~~t~---~~~--~~i~~g-------~~p-~i~~spDg~~lyv~n~~~~~~~rg~   94 (373)
T 2mad_H           29 GADGRRSYINLPAHHS-AIIQQWVLDAGSG---SIL--GHVNGG-------FLP-NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             CCCCCEEEEeCCcccC-CccEEEEEECCCC---eEE--EEecCC-------CCC-CeEECCCCCEEEEEeccccccccCC
Confidence            467777777743 221 1117788887764   221  112221       123 456699999998885          


Q ss_pred             CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc--CCeEEEE
Q 018293           73 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVKIW  150 (358)
Q Consensus        73 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--dg~v~iw  150 (358)
                      .++.|.+||..+.+......+.+.                  . .. .+......+.|+|+| ++|+.+..  ++.|.++
T Consensus        95 ~~~~v~viD~~t~~~~~~i~~~~~------------------~-~~-~~g~~p~~~~~spDG-~~l~v~n~~~~~~v~vi  153 (373)
T 2mad_H           95 RTDYVEVFDPVTFLPIADIELPDA------------------P-RF-DVGPYSWMNANTPNN-ADLLFFQFAAGPAVGLV  153 (373)
T ss_pred             CCCeEEEEECCCCcEEEEEECCCc------------------c-cc-ccCCCccceEECCCC-CEEEEEecCCCCeEEEE
Confidence            367899999976554443222100                  0 00 011234588999994 56666653  5789999


Q ss_pred             ECCCCceeee-ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-----eecCC-eeeEEEcCCCCCe
Q 018293          151 DVAAGKCNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-----AVAAD-VESLAWDPHAEHS  223 (358)
Q Consensus       151 d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~-i~~~~~~~~~~~~  223 (358)
                      | .+++.+.. +... .   ++.+.|++++.+++.+.||.+.++|. +++......     ....+ .....+.++++.+
T Consensus       154 D-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  227 (373)
T 2mad_H          154 V-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI  227 (373)
T ss_pred             E-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEE
Confidence            9 99988877 6532 2   24566777677888889999999999 655432111     11111 1234556655544


Q ss_pred             EEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee----------cCCceeEEEecCCCCcEEEEEeC----------CC
Q 018293          224 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA----------HDKAVCTISYNPLVPNLLATGST----------DK  283 (358)
Q Consensus       224 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~i~~~~~~~~~l~~~~~----------dg  283 (358)
                      +++. ..+.+.+.|+.....       .....+..          .......+.++|++ ..+++...          ++
T Consensus       228 ~~~~-~~~~v~vid~~~~~~-------~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~-~~lyV~~~~~~~~~~~~~~~  298 (373)
T 2mad_H          228 VWPV-YSGKILQADISAAGA-------TNKAPIDALSGGRKADTWRPGGWQQVAYLKSS-DGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             EEEc-CCceEEEEeccCCcc-------eEeeeeeecCCcccccceecCceEeEEECCCC-CEEEEEeccCCcccccCCCC
Confidence            4444 678999999875421       11111110          12224457889988 44444432          35


Q ss_pred             cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEc-cCCeEEEEEccCCCcccc
Q 018293          284 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       284 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~  343 (358)
                      .|.++|..+.+..  ..+. -.....+++|+|||+++++++. .++.|.+||+.+++.+.+
T Consensus       299 ~V~VID~~t~~vv--~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          299 EVTSVTGLVGQTS--SQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             eEEEEECCCCEEE--EEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            7999999988743  3332 2235788999999994455555 589999999999998866

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.69  E-value=1.5e-14  Score=117.47  Aligned_cols=236  Identities=9%  Similarity=0.042  Sum_probs=152.3

Q ss_pred             cccCCCcEEE-EEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            2 TINPNDAVIV-CARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         2 ~~~p~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      .+.|+|++++ +....+     .++.|+..... ...+..   .....+.       .++++++|+++++.. ++.|.+|
T Consensus        30 ~~~~~g~l~v~~~~~~~-----~i~~~~~~~~~-~~~~~~---~~~~~p~-------~i~~~~~g~l~v~~~-~~~i~~~   92 (270)
T 1rwi_B           30 AVDSAGNVYVTSEGMYG-----RVVKLATGSTG-TTVLPF---NGLYQPQ-------GLAVDGAGTVYVTDF-NNRVVTL   92 (270)
T ss_dssp             EECTTCCEEEEECSSSC-----EEEEECC------EECCC---CSCCSCC-------CEEECTTCCEEEEET-TTEEEEE
T ss_pred             EECCCCCEEEEccCCCC-----cEEEecCCCcc-cceEee---CCcCCcc-------eeEECCCCCEEEEcC-CCEEEEE
Confidence            5678898766 333333     67777765431 111100   0011222       344588998777766 8899999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      |.+......                           ........+.++++.++ ++++++...++.|.+|+..+......
T Consensus        93 d~~~~~~~~---------------------------~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~~~  144 (270)
T 1rwi_B           93 AAGSNNQTV---------------------------LPFDGLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQTVL  144 (270)
T ss_dssp             CTTCSCCEE---------------------------CCCCSCSSEEEEEECTT-CCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred             eCCCceEee---------------------------eecCCcCCCcceEECCC-CCEEEEECCCCEEEEEECCCceeEee
Confidence            976422110                           00122356889999998 55777777788999998655543332


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      .......+.++++++++ +++++...++.|.+||................+..+++++++ +++++...++.|.+||...
T Consensus       145 ~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~  222 (270)
T 1rwi_B          145 PFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGS  222 (270)
T ss_dssp             CCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTC
T ss_pred             ccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCC
Confidence            22233467899999998 677777778899999987654332222222568899999965 5777777788999999865


Q ss_pred             CCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293          241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~  294 (358)
                      .         ........+...+.+++++|+| +++++...++.|+++++...+
T Consensus       223 ~---------~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          223 T---------TSTVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             S---------CCEECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEEEECCCGGG
T ss_pred             C---------cceeeccCCCCCceeEEECCCC-CEEEEECCCCEEEEEcCCCcc
Confidence            4         2111112233568899999998 788888889999999987655

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.67  E-value=1e-13  Score=123.29  Aligned_cols=237  Identities=10%  Similarity=0.027  Sum_probs=162.3

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      ++.+.++++...++.|.++|..+++.+....                            ....+..+.|+|+ +++++++
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~----------------------------~g~~p~~v~~SpD-Gr~lyv~  214 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLD----------------------------TGYAVHISRLSAS-GRYLFVI  214 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEE----------------------------CSSCEEEEEECTT-SCEEEEE
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEe----------------------------CCCCccceEECCC-CCEEEEE
Confidence            3455677888889999999998765443221                            2234668999999 5688888


Q ss_pred             EcCCeEEEEECC--CCceeeeecccccceeeEEEc----CCCCcEEEEEeCCCcEEEEEcccCCCccceee---------
Q 018293          142 SADKQVKIWDVA--AGKCNLTLEHHTDKVQAVAWN----HHSPQILLSGSFDRSVVMKDARISTHSGFKWA---------  206 (358)
Q Consensus       142 ~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------  206 (358)
                      +.|+.|.+||+.  +++.+.++... .....++|+    |+|...+++...++.+.++|..+.+.+.....         
T Consensus       215 ~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~  293 (567)
T 1qks_A          215 GRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE  293 (567)
T ss_dssp             ETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCC
T ss_pred             cCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccc
Confidence            999999999995  77888877753 346789999    69844445555679999999887766543221         


Q ss_pred             -e-cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc
Q 018293          207 -V-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  284 (358)
Q Consensus       207 -~-~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  284 (358)
                       + ...+..+..++++..+++....+|.|.++|......       ..+..+ ........+.|+|++..++++...++.
T Consensus       294 ~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-------~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~  365 (567)
T 1qks_A          294 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-------LKTTEI-SAERFLHDGGLDGSHRYFITAANARNK  365 (567)
T ss_dssp             EESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-------EEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred             ccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-------ceeeee-eccccccCceECCCCCEEEEEeCCCCe
Confidence             1 125677888887666666667789999999876421       112222 233456788999999434445556889


Q ss_pred             EEEEecCCCCceeeEec---CCCCceeEEEEEcCCCCeEEEEEc-cCCeEEEEEccC
Q 018293          285 VKLWDLSNNQPSCIASR---NPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLS  337 (358)
Q Consensus       285 i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~  337 (358)
                      |.++|..+++.......   ..|.+.-..+ ++|++..+++++. .++.|.++|..+
T Consensus       366 V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          366 LVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             EEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            99999999875444333   1243222222 6887554666664 568999999987

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.65  E-value=1.7e-13  Score=112.81  Aligned_cols=227  Identities=9%  Similarity=0.055  Sum_probs=147.6

Q ss_pred             ccCC-CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           61 DREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        61 ~s~~-~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      |+++ +.++++...++.|..||..++....                             ......+.++++++++ ++++
T Consensus        20 w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-----------------------------~~~~~~~~~i~~~~dG-~l~v   69 (297)
T 3g4e_A           20 WEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-----------------------------VTMDAPVSSVALRQSG-GYVA   69 (297)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTCCEEE-----------------------------EECSSCEEEEEEBTTS-SEEE
T ss_pred             EECCCCEEEEEECCCCEEEEEECCCCcEEE-----------------------------EeCCCceEEEEECCCC-CEEE
Confidence            3664 5677777788999999987533210                             0134578999999994 4554


Q ss_pred             EEEcCCeEEEEECCCCceeeeecc----cccceeeEEEcCCCCcEEEEEeCC---------CcEEEEEcccCCCccceee
Q 018293          140 SASADKQVKIWDVAAGKCNLTLEH----HTDKVQAVAWNHHSPQILLSGSFD---------RSVVMKDARISTHSGFKWA  206 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~  206 (358)
                      + . ++.|.+||.++++.......    ....+..++++|+| +++++....         ..-.+|.+...........
T Consensus        70 ~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~  146 (297)
T 3g4e_A           70 T-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD  146 (297)
T ss_dssp             E-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE
T ss_pred             E-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCCEEEEee
Confidence            4 3 57899999988765332221    12457889999999 665544321         2334555443322222334


Q ss_pred             ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcc--cCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc
Q 018293          207 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR--TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  284 (358)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  284 (358)
                      .......++|+|++..++++.+.++.|..||+.  ++...    ..+....+..+......+++.++| ++.++....+.
T Consensus       147 ~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~----~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~  221 (297)
T 3g4e_A          147 QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS----NRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGR  221 (297)
T ss_dssp             EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE----EEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTE
T ss_pred             ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc----CcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCE
Confidence            445678899999776566777778999999984  32100    001122222334567899999998 77777777888


Q ss_pred             EEEEecCCCCceeeEecCCCCceeEEEEEc-CCCCeEEEEEccC
Q 018293          285 VKLWDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGGSK  327 (358)
Q Consensus       285 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~d  327 (358)
                      |..||..+++.  +..+..+...+++++|. |+++.++++...+
T Consensus       222 v~~~d~~tG~~--~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          222 VIRLDPVTGKR--LQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             EEEECTTTCCE--EEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             EEEEcCCCceE--EEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            99999988874  33444445679999998 8888777776544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.65  E-value=5.1e-13  Score=111.82  Aligned_cols=293  Identities=12%  Similarity=0.082  Sum_probs=178.5

Q ss_pred             ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC----------
Q 018293            3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS----------   72 (358)
Q Consensus         3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~----------   72 (358)
                      ..|+++.+.++........-.++++|....   .+.  ........| .       +.++|||++|+++.          
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~---~v~--~~I~vG~~P-~-------va~spDG~~lyVan~~~~r~~~G~  106 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAG---RVI--GMIDGGFLP-N-------PVVADDGSFIAHASTVFSRIARGE  106 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTT---EEE--EEEEECSSC-E-------EEECTTSSCEEEEEEEEEETTEEE
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCC---eEE--EEEECCCCC-c-------EEECCCCCEEEEEcccccccccCC
Confidence            468999999986531001238999998764   222  122222222 1       34499999998775          


Q ss_pred             CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc--CCeEEEE
Q 018293           73 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVKIW  150 (358)
Q Consensus        73 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--dg~v~iw  150 (358)
                      .++.|.+||..+.+......+..+                    ...........+.|+|+| ++++.+..  ++.|.++
T Consensus       107 ~~~~VsviD~~t~~v~~~I~v~~g--------------------~r~~~g~~P~~~a~spDG-k~lyVan~~~~~~VsVI  165 (386)
T 3sjl_D          107 RTDYVEVFDPVTLLPTADIELPDA--------------------PRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVV  165 (386)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTC--------------------CCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEECCCc--------------------cccccCCCCceEEEcCCC-CEEEEEEcCCCCeEEEE
Confidence            367899999987665544332110                    000011235578999995 55655543  6899999


Q ss_pred             ECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc-CCCccceeee----cCCe-eeEEEcCCCCCeE
Q 018293          151 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSGFKWAV----AADV-ESLAWDPHAEHSF  224 (358)
Q Consensus       151 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~i-~~~~~~~~~~~~~  224 (358)
                      |+.+++.+.++....  .  ....|.+.+.+++.+.||.+.+.++.. ++........    ..++ ....|.+.++ .+
T Consensus       166 D~~t~~vv~tI~v~g--~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~  240 (386)
T 3sjl_D          166 DLEGKAFKRMLDVPD--C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG-RL  240 (386)
T ss_dssp             ETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT-EE
T ss_pred             ECCCCcEEEEEECCC--c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC-cE
Confidence            999999988885322  1  223355556778888899999999876 3331100011    1112 1245543234 34


Q ss_pred             EEEecCCeEEEEEcccCCCCCCCCCCCccEEEe----------ecCCceeEEEecCCCCcEEEEEeC---------CCcE
Q 018293          225 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH----------AHDKAVCTISYNPLVPNLLATGST---------DKMV  285 (358)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~i~~~~~~~~~l~~~~~---------dg~i  285 (358)
                      +..+.+|.|.+.|+.....       .....+.          -.......++++|++.+++++-..         .+.|
T Consensus       241 ~~vs~~g~V~v~d~~~~~~-------~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V  313 (386)
T 3sjl_D          241 VWPTYTGKIHQIDLSSGDA-------KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV  313 (386)
T ss_dssp             EEEBTTSEEEEEECTTSSC-------EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred             EEEeCCCEEEEEECCCCcc-------eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEE
Confidence            3455689999999976521       1111111          012234457778988444443321         2469


Q ss_pred             EEEecCCCCceeeEecCCCCceeEEEEEcCCCC-eEEEEEccCCeEEEEEccCCCccccc
Q 018293          286 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       286 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      .++|+.+.+........   ..+.++++++|++ .++++...++.|.++|..+++.+.+.
T Consensus       314 ~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i  370 (386)
T 3sjl_D          314 VVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV  370 (386)
T ss_dssp             EEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence            99999999854333332   4688999999996 44555667899999999999877654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.64  E-value=3.7e-14  Score=130.70  Aligned_cols=247  Identities=9%  Similarity=-0.030  Sum_probs=156.6

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCe-----
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA-----   76 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~-----   76 (358)
                      .+||+|+.|+.+...+......+++++...+....  ..   .++...      ...+.|+|||+.|+.++.|..     
T Consensus       127 ~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~---~~~~~~------~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          127 AVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VD---VIEGGK------YATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             EECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SC---CBSCCT------TCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             EECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--Cc---ccCccc------ccceEEecCCCEEEEEEecCCCCCcc
Confidence            68999999998866543233588999987753210  00   111110      024556999999999888766     


Q ss_pred             --------EEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCC---
Q 018293           77 --------IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK---  145 (358)
Q Consensus        77 --------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg---  145 (358)
                              |++|++.++....                       ..+.....|...+..+.|+|+| ++|+.++.++   
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~-----------------------~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~  251 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKD-----------------------TVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSE  251 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGC-----------------------EEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTE
T ss_pred             ccCCCCCEEEEEECCCCchhc-----------------------eEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCc
Confidence                    9999997644211                       1112223466778999999995 4565555555   


Q ss_pred             -eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEe---CCCcEEEEEcccCCC--ccceeee--cCCeeeEEEc
Q 018293          146 -QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS---FDRSVVMKDARISTH--SGFKWAV--AADVESLAWD  217 (358)
Q Consensus       146 -~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~--~~~i~~~~~~  217 (358)
                       .|.+|+..+++ ...+..+...+....+ +++ .+++.+.   .++.|.+||+.+++.  ......+  ...+..++|+
T Consensus       252 ~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~  328 (695)
T 2bkl_A          252 NDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV  328 (695)
T ss_dssp             EEEEEECTTCSS-CEEEEECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred             eEEEEEcCCCCc-eEEeecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence             67777665554 3444445555666666 677 4555544   257899999977653  1222222  3457778887


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-CCceeEEEecCCCCcEEEEEeC---CCcEEEEecCCC
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGST---DKMVKLWDLSNN  293 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~---dg~i~i~d~~~~  293 (358)
                        ++.++++...|+..++|.+...        ......+..+ ...+..+.++|++..++++.+.   .+.|++||+.++
T Consensus       329 --~~~lv~~~~~dg~~~l~~~~~~--------g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g  398 (695)
T 2bkl_A          329 --GGHLSLEYLKDATSEVRVATLK--------GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG  398 (695)
T ss_dssp             --TTEEEEEEEETTEEEEEEEETT--------CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred             --CCEEEEEEEECCEEEEEEEeCC--------CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence              4558888889999888877632        1333444444 5677888999988445444433   467999999887


Q ss_pred             Cce
Q 018293          294 QPS  296 (358)
Q Consensus       294 ~~~  296 (358)
                      +..
T Consensus       399 ~~~  401 (695)
T 2bkl_A          399 KSE  401 (695)
T ss_dssp             CEE
T ss_pred             cEE
Confidence            743

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.63  E-value=5.1e-13  Score=109.97  Aligned_cols=230  Identities=7%  Similarity=0.002  Sum_probs=157.6

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      .++++|+++++...++.|.+||.. +. ....                         ....+...+.++++.++ +.+++
T Consensus        21 ~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~-------------------------~~~~~~~~~~~i~~~~~-g~l~v   72 (299)
T 2z2n_A           21 TVSDKGKVWITQHKANMISCINLD-GK-ITEY-------------------------PLPTPDAKVMCLTISSD-GEVWF   72 (299)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-CC-EEEE-------------------------ECSSTTCCEEEEEECTT-SCEEE
T ss_pred             EECCCCCEEEEecCCCcEEEEcCC-CC-eEEe-------------------------cCCcccCceeeEEECCC-CCEEE
Confidence            347899988877778899999976 22 1110                         01123467899999998 55776


Q ss_pred             EEEcCCeEEEEECCCCcee-eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-eecCCeeeEEEc
Q 018293          140 SASADKQVKIWDVAAGKCN-LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWD  217 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~  217 (358)
                      +...++.|..||.. ++.. ..+......+.++++.+++ .++++...++.|..||. +++...... .....+..++++
T Consensus        73 ~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~  149 (299)
T 2z2n_A           73 TENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG  149 (299)
T ss_dssp             EETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred             eCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc
Confidence            66668899999976 4321 1222244578899999988 77777777889999998 433222111 123568899999


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccE-EEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  296 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  296 (358)
                      +++ +++++...++.|..||. ++         .... ........+.++++.+++ .+.++...++.|.+||. +++. 
T Consensus       150 ~~g-~l~v~~~~~~~i~~~~~-~g---------~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~-  215 (299)
T 2z2n_A          150 SDN-ALWFTENQNNAIGRITE-SG---------DITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-SGEI-  215 (299)
T ss_dssp             TTS-CEEEEETTTTEEEEECT-TC---------CEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCE-
T ss_pred             CCC-CEEEEeCCCCEEEEEcC-CC---------cEEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-CCcE-
Confidence            854 56666666789999998 44         2211 123334567899999987 67666666788999999 6653 


Q ss_pred             eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      .......+...+.+++++++|+ ++++...++.|..||.
T Consensus       216 ~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          216 TEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTS  253 (299)
T ss_dssp             EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEET
T ss_pred             EEEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECC
Confidence            2233344456788999999998 6776667789999998

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.63  E-value=1.2e-13  Score=118.67  Aligned_cols=236  Identities=8%  Similarity=0.022  Sum_probs=157.4

Q ss_pred             cCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCC
Q 018293           56 DCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  135 (358)
Q Consensus        56 ~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  135 (358)
                      |..++++++++++++...++.|++||..++.....                           ... ..... ++|+++ +
T Consensus       133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~---------------------------~~~-~~~~~-ia~~~~-g  182 (409)
T 3hrp_A          133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV---------------------------HPG-FKGGK-PAVTKD-K  182 (409)
T ss_dssp             EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE---------------------------EET-CCBCB-CEECTT-S
T ss_pred             ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe---------------------------ecc-CCCCc-eeEecC-C
Confidence            34556689999888888889999999875332110                           001 12223 899999 5


Q ss_pred             cEEEEEEcCC--eEEEEECCCCceeeee----cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc----ee
Q 018293          136 NILASASADK--QVKIWDVAAGKCNLTL----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF----KW  205 (358)
Q Consensus       136 ~~l~s~~~dg--~v~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~  205 (358)
                      ..|+++..++  .|.+++...+.....+    ......+.+++++|++ ..|+.+..++.|+.||..+......    ..
T Consensus       183 ~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~-g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~  261 (409)
T 3hrp_A          183 QRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETE-EWLYFVDSNKNFGRFNVKTQEVTLIKQLELS  261 (409)
T ss_dssp             SEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTS-SEEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred             CcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCC-CeEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence            5777777765  7999998766543333    2244667899999955 3455577788999999886653221    11


Q ss_pred             eecCCe-e-eEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec---------------CCceeEEEe
Q 018293          206 AVAADV-E-SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---------------DKAVCTISY  268 (358)
Q Consensus       206 ~~~~~i-~-~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---------------~~~i~~i~~  268 (358)
                      .....- . .++|+|+++.++++-..++.|+.|+....           ...+.++               -.....+++
T Consensus       262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-----------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~  330 (409)
T 3hrp_A          262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-----------CEWFCGSATQKTVQDGLREEALFAQPNGMTV  330 (409)
T ss_dssp             SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-----------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEE
T ss_pred             CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-----------EEEEEeCCCCCCcCCCcccccEeCCCeEEEE
Confidence            111111 3 89999976767777777889999987632           2222222               134689999


Q ss_pred             cCCCCcEEEEEe-CCCcEEEEecCCCCceeeEecCC------------CCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          269 NPLVPNLLATGS-TDKMVKLWDLSNNQPSCIASRNP------------KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       269 ~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      +|++ +++++-. .++.|+.|++.++....+.....            .-.....++++++|. ++++-..++.|+.+++
T Consensus       331 d~dG-~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~-lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          331 DEDG-NFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG-YWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CTTC-CEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-EEEEESTTCEEEEEEE
T ss_pred             eCCC-CEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-EEEEECCCCeEEEEEe
Confidence            9998 6777777 78899999987775322222100            123578999999976 7888888889988875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.63  E-value=7.9e-14  Score=114.83  Aligned_cols=203  Identities=7%  Similarity=0.032  Sum_probs=142.3

Q ss_pred             CCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC
Q 018293          120 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  199 (358)
Q Consensus       120 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  199 (358)
                      .+.....+++|+|++..+++++..++.|..||..++  ...+..+...+.++++++++ .++++...++.|.+||..+++
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~  101 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGE  101 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCC
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCc
Confidence            355667899999995448888889999999999877  55666667789999999998 777776667899999997765


Q ss_pred             Cccceee----ecCCeeeEEEcCCCCCeEEE----Eec-------------CCeEEEEEcccCCCCCCCCCCCccEEEee
Q 018293          200 HSGFKWA----VAADVESLAWDPHAEHSFVV----SLE-------------DGTIKGFDIRTAKSDPDSTSQQSSFTLHA  258 (358)
Q Consensus       200 ~~~~~~~----~~~~i~~~~~~~~~~~~~~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  258 (358)
                      .......    ....+..++++|++ +++++    |+.             .+.|..++.. +         . ...+..
T Consensus       102 ~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g---------~-~~~~~~  169 (296)
T 3e5z_A          102 WESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G---------T-LSAPIR  169 (296)
T ss_dssp             EEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S---------C-EEEEEC
T ss_pred             EEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-C---------C-EEEeec
Confidence            4332111    12346789999965 46665    321             3455555543 2         2 233445


Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCcEEEEecC-CCCc-eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          259 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       259 ~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      +......++|+|++ +.+++.+.++.|.+|++. +++. .....+..+...+..++++++|+ ++++.  ++.|.+|+..
T Consensus       170 ~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          170 DRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPD  245 (296)
T ss_dssp             CCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTT
T ss_pred             CCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCC
Confidence            55667899999998 666777888999999997 4442 11122233455677899999998 56655  7899999986


Q ss_pred             CCCccc
Q 018293          337 SDAGIS  342 (358)
Q Consensus       337 ~~~~~~  342 (358)
                       ++.+.
T Consensus       246 -g~~~~  250 (296)
T 3e5z_A          246 -GDELG  250 (296)
T ss_dssp             -SCEEE
T ss_pred             -CCEEE
Confidence             55444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.63  E-value=1.5e-12  Score=107.16  Aligned_cols=272  Identities=10%  Similarity=0.031  Sum_probs=170.3

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      .+.|+|+++++....+     .+..|+.. +   .+...........+.       .+.++++|+++++...++.|..||
T Consensus        26 ~~d~~g~l~v~~~~~~-----~v~~~~~~-~---~~~~~~~~~~~~~~~-------~i~~~~~g~l~v~~~~~~~v~~~d   89 (300)
T 2qc5_A           26 TSSEDGKVWFTQHKAN-----KISSLDQS-G---RIKEFEVPTPDAKVM-------CLIVSSLGDIWFTENGANKIGKLS   89 (300)
T ss_dssp             EECTTSCEEEEETTTT-----EEEEECTT-S---CEEEEECSSTTCCEE-------EEEECTTSCEEEEETTTTEEEEEC
T ss_pred             eECCCCCEEEEcCCCC-----eEEEECCC-C---ceEEEECCCCCCcce-------eEEECCCCCEEEEecCCCeEEEEC
Confidence            4567888777664444     67777766 3   221110000011222       334478898888877788999998


Q ss_pred             cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee-e
Q 018293           82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-T  160 (358)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~  160 (358)
                      .. ++. ...                         ........+.++++.++ +.++++...++.|..+|.. ++... .
T Consensus        90 ~~-g~~-~~~-------------------------~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g~~~~~~  140 (300)
T 2qc5_A           90 KK-GGF-TEY-------------------------PLPQPDSGPYGITEGLN-GDIWFTQLNGDRIGKLTAD-GTIYEYD  140 (300)
T ss_dssp             TT-SCE-EEE-------------------------ECSSTTCCEEEEEECST-TCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred             CC-CCe-EEe-------------------------cCCCCCCCCccceECCC-CCEEEEccCCCeEEEECCC-CCEEEcc
Confidence            75 221 110                         11123356889999988 5577766667899999987 55432 2


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR  239 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~  239 (358)
                      +......+..+++.+++ +++++...++.|..+|. +++...... .....+..+++++++ +++++....+.|..||. 
T Consensus       141 ~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-  216 (300)
T 2qc5_A          141 LPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT-  216 (300)
T ss_dssp             CSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-
T ss_pred             CCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC-
Confidence            23234568899999998 66666666788999998 433322111 123457889999854 56666666778999998 


Q ss_pred             cCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCe
Q 018293          240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF  319 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  319 (358)
                      ++.        ........+...+.++++.+++ ++.++...++.|..||. +++. ...........+.++++.++|. 
T Consensus       217 ~g~--------~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~~g~-  284 (300)
T 2qc5_A          217 TGE--------ISEYDIPTPNARPHAITAGKNS-EIWFTEWGANQIGRITN-DNTI-QEYQLQTENAEPHGITFGKDGS-  284 (300)
T ss_dssp             TCC--------EEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECT-TSCE-EEEECCSTTCCCCCEEECTTSC-
T ss_pred             CCc--------EEEEECCCCCCCceEEEECCCC-CEEEeccCCCeEEEECC-CCcE-EEEECCccCCccceeEeCCCCC-
Confidence            331        1112223344568899999988 66666656789999998 4442 2233333345688899999998 


Q ss_pred             EEEEEccCCeEEEEEcc
Q 018293          320 VLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       320 ~l~~~~~dg~i~vw~~~  336 (358)
                      ++++.. . .|..+|..
T Consensus       285 l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          285 VWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EEEECS-S-EEEEEEEC
T ss_pred             EEEEcc-C-ceEEeCCC
Confidence            566444 4 77777653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.62  E-value=1.9e-13  Score=114.10  Aligned_cols=229  Identities=7%  Similarity=-0.041  Sum_probs=153.5

Q ss_pred             cCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEE
Q 018293           71 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  150 (358)
Q Consensus        71 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  150 (358)
                      |+.++.|.+||..+++........                     ..-.........+.+..  +.++++...++.|.+|
T Consensus        13 g~~~~~l~~~d~~t~~~~~~i~~~---------------------~n~~~lg~~~~~i~~~~--~~lyv~~~~~~~v~vi   69 (328)
T 3dsm_A           13 QYSNATLSYYDPATCEVENEVFYR---------------------ANGFKLGDVAQSMVIRD--GIGWIVVNNSHVIFAI   69 (328)
T ss_dssp             TSCCBEEEEEETTTTEEECSHHHH---------------------HHSSCCBSCEEEEEEET--TEEEEEEGGGTEEEEE
T ss_pred             CCCCceEEEEECCCCEEhhhhHhh---------------------hcCcccCccceEEEEEC--CEEEEEEcCCCEEEEE
Confidence            345899999999875543211000                     00001223456777743  4566677778999999


Q ss_pred             ECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecC------CeeeEEEcCCCCCeE
Q 018293          151 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA------DVESLAWDPHAEHSF  224 (358)
Q Consensus       151 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~i~~~~~~~~~~~~~  224 (358)
                      |.++++.+.++. .......+++++++ .++++...++.|.+||..+.+.... .....      ....+++  +++.++
T Consensus        70 D~~t~~~~~~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~-i~~g~~~~~~~~p~~i~~--~~~~ly  144 (328)
T 3dsm_A           70 DINTFKEVGRIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGY-IECPDMDMESGSTEQMVQ--YGKYVY  144 (328)
T ss_dssp             ETTTCCEEEEEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEE-EECTTCCTTTCBCCCEEE--ETTEEE
T ss_pred             ECcccEEEEEcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEE-EEcCCccccCCCcceEEE--ECCEEE
Confidence            999999988885 34668899998887 6665555899999999987765432 22223      5667777  245444


Q ss_pred             EEEe-cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC----------CcEEEEecCCC
Q 018293          225 VVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD----------KMVKLWDLSNN  293 (358)
Q Consensus       225 ~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d----------g~i~i~d~~~~  293 (358)
                      ++.. .++.|.++|..+.         +....+... .....++++|+| ++++++..+          +.|.++|..++
T Consensus       145 v~~~~~~~~v~viD~~t~---------~~~~~i~~g-~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~  213 (328)
T 3dsm_A          145 VNCWSYQNRILKIDTETD---------KVVDELTIG-IQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETF  213 (328)
T ss_dssp             EEECTTCCEEEEEETTTT---------EEEEEEECS-SCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTT
T ss_pred             EEcCCCCCEEEEEECCCC---------eEEEEEEcC-CCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCC
Confidence            4444 4889999999886         444455433 345788999988 666665544          78999999888


Q ss_pred             CceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          294 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       294 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      +........ .......++|+|+++.+++ +..  .|.+||..+++...
T Consensus       214 ~v~~~~~~~-~g~~p~~la~~~d~~~lyv-~~~--~v~~~d~~t~~~~~  258 (328)
T 3dsm_A          214 TVEKQFKFK-LGDWPSEVQLNGTRDTLYW-INN--DIWRMPVEADRVPV  258 (328)
T ss_dssp             EEEEEEECC-TTCCCEEEEECTTSCEEEE-ESS--SEEEEETTCSSCCS
T ss_pred             eEEEEEecC-CCCCceeEEEecCCCEEEE-Ecc--EEEEEECCCCceee
Confidence            743333322 1236789999999996544 433  89999998887643

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.59  E-value=6.1e-14  Score=117.84  Aligned_cols=172  Identities=15%  Similarity=0.112  Sum_probs=128.8

Q ss_pred             cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc-----------eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEE
Q 018293          124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGK-----------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM  192 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  192 (358)
                      .++.+++++. ..++++|+.++ +.+|+++...           ..... .+.. |+.++|  ++ ..|+++ .++.|++
T Consensus        39 ~~nlLais~~-~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~-~~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNS-KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HG-DQVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETT-TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ET-TEEEEE-ESSEEEE
T ss_pred             cccEEEEcCC-CCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CC-CEEEEE-cCCcEEE
Confidence            6899999999 55888888875 6669876433           11222 3566 999999  66 778877 8899999


Q ss_pred             EEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293          193 KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  272 (358)
Q Consensus       193 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  272 (358)
                      ||+++.........+...+.++.+.+.   .+++++.||.|.+||+...         ....    +...|++++|+|+|
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~---------~~~~----~~~~Vs~v~WSpkG  174 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTK---------STKQ----LAQNVTSFDVTNSQ  174 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTC---------CEEE----EEESEEEEEECSSE
T ss_pred             EEchhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCC---------cccc----ccCCceEEEEcCCc
Confidence            999887655545566777888877663   3888899999999999876         2221    44679999999987


Q ss_pred             CcEEEEEeCCCcEEEEecCCCCceeeEec------C---CCCceeEEEEEcCCCCeEEE
Q 018293          273 PNLLATGSTDKMVKLWDLSNNQPSCIASR------N---PKAGAVFSVAFSEDSPFVLA  322 (358)
Q Consensus       273 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~---~~~~~v~~~~~~~~~~~~l~  322 (358)
                         ++.|..||.+++|+....+......+      .   +|...|.++.|.+++.++++
T Consensus       175 ---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          175 ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             ---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence               67789999999998877652112223      1   46788999999999986443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.59  E-value=1.9e-13  Score=110.99  Aligned_cols=190  Identities=15%  Similarity=0.090  Sum_probs=139.6

Q ss_pred             CcEEEEEEcCCeEEEEECCCCceeeeecccc-cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee-cCCee
Q 018293          135 RNILASASADKQVKIWDVAAGKCNLTLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-AADVE  212 (358)
Q Consensus       135 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~  212 (358)
                      +++|++++.|+.|.+||.++++.+.++..+. ..+.++.+.|+| ++++  +.++.|..||. +++.+...... ...+.
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            3689999999999999999999999998765 478899999999 7777  45778999998 66554422222 24677


Q ss_pred             eEEEcCCCCCeEEEEec-CCeEEEEEcccCCCCCCCCCCCccEEEee------cCCceeEEEecCCCCcEEEEEeCCCcE
Q 018293          213 SLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHA------HDKAVCTISYNPLVPNLLATGSTDKMV  285 (358)
Q Consensus       213 ~~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~i~~i~~~~~~~~~l~~~~~dg~i  285 (358)
                      ++.+.+++ +++++.+. ++.+..+|. ++         +.+..+..      +......+++.++| +++++...++.|
T Consensus        81 ~~~~~~dG-~~lv~~~~~~~~v~~vd~-~G---------k~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v  148 (276)
T 3no2_A           81 TARILPDG-NALVAWCGHPSTILEVNM-KG---------EVLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEV  148 (276)
T ss_dssp             EEEECTTS-CEEEEEESTTEEEEEECT-TS---------CEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEE
T ss_pred             ccEECCCC-CEEEEecCCCCEEEEEeC-CC---------CEEEEEeccCCCCcccccccCceECCCC-CEEEEecCCCEE
Confidence            88999955 57777666 777777775 33         33434331      22234566788888 899999999999


Q ss_pred             EEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          286 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       286 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      ..||.. ++.  +..+... ....++...++|. ++++++.++.|..+|..+|+.+.+.-
T Consensus       149 ~~~d~~-G~~--~w~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          149 REIAPN-GQL--LNSVKLS-GTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             EEECTT-SCE--EEEEECS-SCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             EEECCC-CCE--EEEEECC-CCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            999998 773  4444332 3455678889998 57777878899999999898876653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.58  E-value=1.3e-12  Score=111.38  Aligned_cols=293  Identities=12%  Similarity=0.085  Sum_probs=175.8

Q ss_pred             CCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC----------CC
Q 018293            5 PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS----------ME   74 (358)
Q Consensus         5 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~----------~d   74 (358)
                      |+++.+.++........-.+.++|....   .+.  ........| .+       .++|||++|+++.          .+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~---~vv--~~I~vG~~P-gi-------a~SpDgk~lyVan~~~~~~~~G~~~  148 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTG---RIL--GMTDGGFLP-HP-------VAAEDGSFFAQASTVFERIARGKRT  148 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTT---EEE--EEEEECSSC-EE-------EECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCC---EEE--EEEECCCCC-ce-------EECCCCCEEEEEeccccccccCCCC
Confidence            4666666664432000158899998764   222  222233333 33       4599999998886          36


Q ss_pred             CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc--CCeEEEEEC
Q 018293           75 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVKIWDV  152 (358)
Q Consensus        75 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--dg~v~iwd~  152 (358)
                      +.|.++|..+.+......+.+.                  . .. ........+.|+|++ ++++.+..  ++.|.+.|+
T Consensus       149 ~~VsviD~~t~~vv~~I~v~g~------------------~-r~-~~g~~P~~~~~spDG-k~lyV~n~~~~~~VsVID~  207 (426)
T 3c75_H          149 DYVEVFDPVTFLPIADIELPDA------------------P-RF-LVGTYQWMNALTPDN-KNLLFYQFSPAPAVGVVDL  207 (426)
T ss_dssp             EEEEEECTTTCCEEEEEEETTC------------------C-CC-CBSCCGGGSEECTTS-SEEEEEECSSSCEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCc------------------c-cc-ccCCCcceEEEcCCC-CEEEEEecCCCCeEEEEEC
Confidence            7899999987665544332100                  0 00 011234578999994 56666653  689999999


Q ss_pred             CCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce---ee-ecCC-eeeEEEcCCCCCeEEEE
Q 018293          153 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---WA-VAAD-VESLAWDPHAEHSFVVS  227 (358)
Q Consensus       153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~-~~~~-i~~~~~~~~~~~~~~~~  227 (358)
                      .+++.+.++.-...    ....|++...+++.+.||.+.+.+..+++.....   .. ...+ ...+.+.+++. .++..
T Consensus       208 ~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~-~~~~~  282 (426)
T 3c75_H          208 EGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG-RLVWP  282 (426)
T ss_dssp             TTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC-EEEEE
T ss_pred             CCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC-EEEEE
Confidence            99998888763221    3344555567777888888888888444332100   00 0111 12356788655 44455


Q ss_pred             ecCCeEEEEEcccCCCCCCCCCCCccEEEe--------ecCCceeEEEecCCCCcEEEEEeC---------CCcEEEEec
Q 018293          228 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--------AHDKAVCTISYNPLVPNLLATGST---------DKMVKLWDL  290 (358)
Q Consensus       228 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~i~~~~~~~~~l~~~~~---------dg~i~i~d~  290 (358)
                      +..+.+.+.|........     .....+.        ........++++|++.+++++...         ++.|.++|.
T Consensus       283 s~~g~V~ViD~~~~~~~v-----~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~  357 (426)
T 3c75_H          283 TYTGKIFQADLTAEGATF-----RAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA  357 (426)
T ss_dssp             BTTSEEEEEEECSSCEEE-----CCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             eCCCcEEEEeccCCceEE-----eeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC
Confidence            678899999986542100     0000000        001112236899998444444331         357999999


Q ss_pred             CCCCceeeEecCCCCceeEEEEEcCCCC-eEEEEEccCCeEEEEEccCCCccccc
Q 018293          291 SNNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       291 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      .+.+........   .....+.|+|||+ .++++...++.|.++|+.+++.+.+.
T Consensus       358 ~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          358 ETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            999843333222   3578899999998 65554446999999999999988764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.57  E-value=8e-12  Score=102.81  Aligned_cols=231  Identities=9%  Similarity=0.015  Sum_probs=156.4

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      .++++|+++++...++.|.+||.. ++. ...                         .+..+...+.++++.++ +.+++
T Consensus        26 ~~d~~g~l~v~~~~~~~v~~~~~~-~~~-~~~-------------------------~~~~~~~~~~~i~~~~~-g~l~v   77 (300)
T 2qc5_A           26 TSSEDGKVWFTQHKANKISSLDQS-GRI-KEF-------------------------EVPTPDAKVMCLIVSSL-GDIWF   77 (300)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-SCE-EEE-------------------------ECSSTTCCEEEEEECTT-SCEEE
T ss_pred             eECCCCCEEEEcCCCCeEEEECCC-Cce-EEE-------------------------ECCCCCCcceeEEECCC-CCEEE
Confidence            347889988888778999999976 221 110                         11123467889999998 55666


Q ss_pred             EEEcCCeEEEEECCCCceee-eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-eecCCeeeEEEc
Q 018293          140 SASADKQVKIWDVAAGKCNL-TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWD  217 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~  217 (358)
                      +...++.|..||.. ++... .+......+.++++.+++ .++++...++.|..+|.. ++...... .....+..++++
T Consensus        78 ~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d  154 (300)
T 2qc5_A           78 TENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG  154 (300)
T ss_dssp             EETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC
T ss_pred             EecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC
Confidence            66667889999987 55432 222234668899999988 777776668889999986 43322111 123568899999


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCcee
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  297 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  297 (358)
                      +++ +++++...++.|..||. .+.        ........+...+.++++.+++ ++.++....+.|.+||. +++. .
T Consensus       155 ~~g-~l~v~~~~~~~i~~~~~-~g~--------~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~-~  221 (300)
T 2qc5_A          155 SDN-ALWFTENQNNSIGRITN-TGK--------LEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT-TGEI-S  221 (300)
T ss_dssp             TTS-SEEEEETTTTEEEEECT-TCC--------EEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCE-E
T ss_pred             CCC-CEEEEecCCCeEEEECC-CCc--------EEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC-CCcE-E
Confidence            955 46666656788999998 331        1112222334568899999987 77776666778999998 4442 2


Q ss_pred             eEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          298 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       298 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      ..........+.+++++++|+ ++++...++.|..|+.
T Consensus       222 ~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          222 EYDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITN  258 (300)
T ss_dssp             EEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECT
T ss_pred             EEECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECC
Confidence            222333456688999999998 6776666789999998

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.57  E-value=7.5e-13  Score=121.83  Aligned_cols=237  Identities=16%  Similarity=0.117  Sum_probs=149.9

Q ss_pred             ccccCCCceEE-----ecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCccc--EEEEecC
Q 018293           59 LKDREKGNFMA-----VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS--VLGLAWN  131 (358)
Q Consensus        59 ~~~s~~~~~l~-----~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~  131 (358)
                      +.|||||++||     .|+....|++||+.+++....                              +...  ...++|+
T Consensus       134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------------------------------~~~~~k~~~~~Ws  183 (693)
T 3iuj_A          134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------------------------------PLKDVKFSGISWL  183 (693)
T ss_dssp             EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------------------------------EEEEEESCCCEEE
T ss_pred             EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------------------------------ccCCceeccEEEe
Confidence            45699999998     354557899999987653221                              1112  3577899


Q ss_pred             CCCCcEEEEEEcCC-------------eEEEEECCCCce----eeeecc-cccceeeEEEcCCCCcEEEEEeC---CCcE
Q 018293          132 KEFRNILASASADK-------------QVKIWDVAAGKC----NLTLEH-HTDKVQAVAWNHHSPQILLSGSF---DRSV  190 (358)
Q Consensus       132 ~~~~~~l~s~~~dg-------------~v~iwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~---dg~i  190 (358)
                       | ++.|+.++.+.             .|.+|++.+...    +..... +.....++.|+|++..++++...   +..|
T Consensus       184 -D-g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i  261 (693)
T 3iuj_A          184 -G-NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRL  261 (693)
T ss_dssp             -T-TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEE
T ss_pred             -C-CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEE
Confidence             8 55677777664             399999987642    333333 44457789999999444454443   2589


Q ss_pred             EEEEcccCCC-ccceeeecCCeeeEEEcCCCCCeEEEEecC---CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEE
Q 018293          191 VMKDARISTH-SGFKWAVAADVESLAWDPHAEHSFVVSLED---GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI  266 (358)
Q Consensus       191 ~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  266 (358)
                      .++|+.++.. .............. |+++++.+++.+..+   +.|..+|+.+...       .....+..|...+.  
T Consensus       262 ~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~--  331 (693)
T 3iuj_A          262 YVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-------AHWRDLIPERQQVL--  331 (693)
T ss_dssp             EEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-------GGCEEEECCCSSCE--
T ss_pred             EEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-------cccEEEecCCCCEE--
Confidence            9999987642 22233333334343 566566666666554   6799999887521       22345566665554  


Q ss_pred             EecCCCCcEEEEEeCCC--cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC---CeEEEEEccCCC
Q 018293          267 SYNPLVPNLLATGSTDK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK---GKLEIWDTLSDA  339 (358)
Q Consensus       267 ~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~  339 (358)
                      .|++++..++++...++  .|++||+..+.. ....+ ...+.+..+.+++++..++++.+..   +.+..||+.+++
T Consensus       332 ~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          332 TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            88888844555555555  588899875542 12122 2345677888888888655544332   789999997765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.56  E-value=2.3e-12  Score=119.70  Aligned_cols=243  Identities=11%  Similarity=0.062  Sum_probs=151.1

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeec-CCccccCCCceEEecCCCCe----
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLD-CPLKDREKGNFMAVGSMEPA----   76 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~l~~g~~dg~----   76 (358)
                      .+||+|+.|+.+...+......+++++...+.   .....   .       .+.. ..+.|+|| +.|+.++.++.    
T Consensus       169 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~---~~~~~---~-------~~~~~~~~~wspD-~~l~~~~~~~~~~~~  234 (741)
T 1yr2_A          169 AASDDGRLLAYSVQDGGSDWRTVKFVGVADGK---PLADE---L-------KWVKFSGLAWLGN-DALLYSRFAEPKEGQ  234 (741)
T ss_dssp             EECTTSSEEEEEEEETTCSEEEEEEEETTTCC---EEEEE---E-------EEEESCCCEESTT-SEEEEEECCCC----
T ss_pred             EECCCCCEEEEEEcCCCCceEEEEEEECCCCC---CCCcc---C-------CCceeccEEEECC-CEEEEEEecCccccc
Confidence            68999999999977653334689999988762   22111   0       1111 14455999 88888776554    


Q ss_pred             ----------EEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCC-
Q 018293           77 ----------IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK-  145 (358)
Q Consensus        77 ----------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg-  145 (358)
                                |++|++.+......                       .+.....+...+..+.|+|+ +++|+..+.++ 
T Consensus       235 ~~~~~~~~~~v~~~~lgt~~~~~~-----------------------lv~~~~~~~~~~~~~~~SpD-G~~l~~~~~~~~  290 (741)
T 1yr2_A          235 AFQALNYNQTVWLHRLGTPQSADQ-----------------------PVFATPELPKRGHGASVSSD-GRWVVITSSEGT  290 (741)
T ss_dssp             ----CCCCCEEEEEETTSCGGGCE-----------------------EEECCTTCTTCEEEEEECTT-SCEEEEEEECTT
T ss_pred             ccccCCCCCEEEEEECCCCchhCE-----------------------EEeccCCCCeEEEEEEECCC-CCEEEEEEEccC
Confidence                      88888865332111                       11122234446889999999 45666665543 


Q ss_pred             ----eEEEEECCCC--ceeeeecccccceeeEEEcCCCCcEEEEEeC----CCcEEEEEcccCC-C-ccceeeecCCeee
Q 018293          146 ----QVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSF----DRSVVMKDARIST-H-SGFKWAVAADVES  213 (358)
Q Consensus       146 ----~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~-~~~~~~~~~~i~~  213 (358)
                          .|.+||+.++  ++...+..+...+.... +|++ ..|+..+.    ++.|.+||+.+.. . ..........+..
T Consensus       291 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~  368 (741)
T 1yr2_A          291 DPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES  368 (741)
T ss_dssp             CSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred             CCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence                8999999877  31444544444455443 4788 55555554    3459999987742 1 2212223334666


Q ss_pred             EEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee-cCCceeEEEecCCCCcEEEEEeC---CCcEEEEe
Q 018293          214 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGST---DKMVKLWD  289 (358)
Q Consensus       214 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~---dg~i~i~d  289 (358)
                      +.|.  ++.++++...|+..++|.+...        ......+.. +...+..+.++|++..++++.+.   .+.|++||
T Consensus       369 ~~~~--~~~lv~~~~~dg~~~l~~~~~~--------g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d  438 (741)
T 1yr2_A          369 VGIA--GNRLFASYIHDAKSQVLAFDLD--------GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALD  438 (741)
T ss_dssp             EEEE--BTEEEEEEEETTEEEEEEEETT--------SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEE
T ss_pred             EEEE--CCEEEEEEEECCEEEEEEEeCC--------CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence            7776  4557888889998888776522        133344443 35678899999988555555443   46799999


Q ss_pred             cCCCC
Q 018293          290 LSNNQ  294 (358)
Q Consensus       290 ~~~~~  294 (358)
                      +.+++
T Consensus       439 ~~tg~  443 (741)
T 1yr2_A          439 PATAK  443 (741)
T ss_dssp             TTTTE
T ss_pred             CCCCc
Confidence            98876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.56  E-value=4.9e-12  Score=105.50  Aligned_cols=226  Identities=12%  Similarity=0.045  Sum_probs=141.4

Q ss_pred             ccccCC-CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           59 LKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        59 ~~~s~~-~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      +.|+|+ +.++++...++.|..||..++....                            + .....+.+++|+++ +.+
T Consensus        54 p~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~----------------------------~-~~~~~v~~i~~~~d-g~l  103 (326)
T 2ghs_A           54 PTFDPASGTAWWFNILERELHELHLASGRKTV----------------------------H-ALPFMGSALAKISD-SKQ  103 (326)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTEEEE----------------------------E-ECSSCEEEEEEEET-TEE
T ss_pred             CeEeCCCCEEEEEECCCCEEEEEECCCCcEEE----------------------------E-ECCCcceEEEEeCC-CeE
Confidence            445786 5566777778999999986432110                            0 12356899999999 555


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeecc----cccceeeEEEcCCCCcEEEEEeC------CCcEEEEEcccCCCccceeee
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEH----HTDKVQAVAWNHHSPQILLSGSF------DRSVVMKDARISTHSGFKWAV  207 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~  207 (358)
                      +++ +. ..|.+||..+++.......    ....+..++++|+| +++++...      .+.|..++  +++. ......
T Consensus       104 ~v~-~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~  177 (326)
T 2ghs_A          104 LIA-SD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFAD  177 (326)
T ss_dssp             EEE-ET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEE
T ss_pred             EEE-EC-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCC
Confidence            554 44 4599999988765332221    12468899999999 65555432      24555555  3322 212233


Q ss_pred             cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcc--cC-CCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc
Q 018293          208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIR--TA-KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  284 (358)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  284 (358)
                      ......++|+|++..++++.+.++.|.+||+.  ++ ....    ......+.........+++.++| ++.++...++.
T Consensus       178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~----~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~  252 (326)
T 2ghs_A          178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK----AEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGA  252 (326)
T ss_dssp             ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC----CEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTE
T ss_pred             CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC----ceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCE
Confidence            34577899999765455666667899999986  33 2100    01111222234556789999988 67666666788


Q ss_pred             EEEEecCCCCceeeEecCCCCceeEEEEEc-CCCCeEEEEEccCC
Q 018293          285 VKLWDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGGSKG  328 (358)
Q Consensus       285 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg  328 (358)
                      |.+||. +++.  +..+..+...+.+++|+ +++..++++...++
T Consensus       253 v~~~d~-~g~~--~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          253 VDRYDT-DGNH--IARYEVPGKQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             EEEECT-TCCE--EEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             EEEECC-CCCE--EEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence            999998 4542  33344445579999998 88886666655553

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.56  E-value=2.7e-13  Score=113.89  Aligned_cols=176  Identities=13%  Similarity=0.132  Sum_probs=126.7

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      ++++...++++|+.++ +.+|++...+.....               .. ...... ....+.. |+.++|  + +.+|+
T Consensus        44 ais~~~gll~a~~~~~-l~v~~~~~l~~~~~~---------------~~-~~~~~~-~~~~lp~-V~~l~f--d-~~~L~  101 (388)
T 1xip_A           44 DISNSKSLFVAASGSK-AVVGELQLLRDHITS---------------DS-TPLTFK-WEKEIPD-VIFVCF--H-GDQVL  101 (388)
T ss_dssp             EEETTTTEEEEEETTE-EEEEEHHHHHHHHHS---------------SS-CCCCCS-EEEECTT-EEEEEE--E-TTEEE
T ss_pred             EEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcc---------------cc-ccccce-EEeeCCC-eeEEEE--C-CCEEE
Confidence            3488999999999875 556998754311000               00 000010 1123556 999999  6 66888


Q ss_pred             EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293          140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  219 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  219 (358)
                      ++ .++.|++||+.+.........+..++.++.+.+.   .+++++.||.+.+||+..+...    .+...|++++|+|.
T Consensus       102 v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~----~~~~~Vs~v~WSpk  173 (388)
T 1xip_A          102 VS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTK----QLAQNVTSFDVTNS  173 (388)
T ss_dssp             EE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEE----EEEESEEEEEECSS
T ss_pred             EE-cCCcEEEEEchhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCccc----cccCCceEEEEcCC
Confidence            88 8899999999877666666677788888887764   2888899999999999876643    25568999999996


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCc--cEEE------e---ecCCceeEEEecCCCCcEEEE
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQS--SFTL------H---AHDKAVCTISYNPLVPNLLAT  278 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~------~---~~~~~i~~i~~~~~~~~~l~~  278 (358)
                      +   ++.|..||.+++|+....         ..  ...+      .   +|...|.++.|.+++ .++++
T Consensus       174 G---~~vg~~dg~i~~~~~~~~---------~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~  230 (388)
T 1xip_A          174 Q---LAVLLKDRSFQSFAWRNG---------EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAV  230 (388)
T ss_dssp             E---EEEEETTSCEEEEEEETT---------EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEE
T ss_pred             c---eEEEEcCCcEEEEcCCCc---------cccccceecCCcccccccCCCeeEEEEEEecCC-eEEEE
Confidence            5   678999999999988765         21  2233      2   367889999999987 67766

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.52  E-value=6.7e-12  Score=104.10  Aligned_cols=241  Identities=10%  Similarity=0.122  Sum_probs=144.6

Q ss_pred             cccCCCcEEEE-------EEecCCCceEEEEEEeccCCCCCceEeece-eecCCcccceeeecCCccccCC-CceEEecC
Q 018293            2 TINPNDAVIVC-------ARNEDDVSHLEVYILEESDGGDPNLYVHHH-IIIPAFPLCMAWLDCPLKDREK-GNFMAVGS   72 (358)
Q Consensus         2 ~~~p~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~   72 (358)
                      .+.|+++++++       +...+     .++.|+...+... .+.... ......+..+       .++++ |+++++..
T Consensus        24 ~~~~~g~l~~~~~~~~~~~~~~~-----~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i-------~~~~~~g~l~v~~~   90 (314)
T 1pjx_A           24 VFDKNGDFYIVAPEVEVNGKPAG-----EILRIDLKTGKKT-VICKPEVNGYGGIPAGC-------QCDRDANQLFVADM   90 (314)
T ss_dssp             EECTTSCEEEEETTCEETTEECC-----EEEEECTTTCCEE-EEECCEETTEECCEEEE-------EECSSSSEEEEEET
T ss_pred             eECCCCCEEEEEeccccCCCCCC-----EEEEEeCCCCcEE-EEEecccCCCCCCCceE-------EEecCCCcEEEEEC
Confidence            56788988887       44444     7888886554211 111100 0011222333       44788 77666554


Q ss_pred             CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC--------
Q 018293           73 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD--------  144 (358)
Q Consensus        73 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--------  144 (358)
                       .+.|.+||.+ ++.... . ..                    .........+.++++.++ ++++++...+        
T Consensus        91 -~~~l~~~d~~-g~~~~~-~-~~--------------------~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~  145 (314)
T 1pjx_A           91 -RLGLLVVQTD-GTFEEI-A-KK--------------------DSEGRRMQGCNDCAFDYE-GNLWITAPAGEVAPADYT  145 (314)
T ss_dssp             -TTEEEEEETT-SCEEEC-C-SB--------------------CTTSCBCBCCCEEEECTT-SCEEEEECBCBCTTSCCC
T ss_pred             -CCCEEEEeCC-CCEEEE-E-ec--------------------cCCCccccCCcCEEECCC-CCEEEEecCccccccccc
Confidence             3478889876 322110 0 00                    000012345889999999 5566666554        


Q ss_pred             -------CeEEEEECCCCceeeeecccccceeeEEEc----CCCCcEEEEEeCCCcEEEEEccc-CCCcc--ceee---e
Q 018293          145 -------KQVKIWDVAAGKCNLTLEHHTDKVQAVAWN----HHSPQILLSGSFDRSVVMKDARI-STHSG--FKWA---V  207 (358)
Q Consensus       145 -------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~i~d~~~-~~~~~--~~~~---~  207 (358)
                             +.|..||.. ++..... .+......++|+    +++..++++...++.|.+||... ++...  ....   .
T Consensus       146 ~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~  223 (314)
T 1pjx_A          146 RSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT  223 (314)
T ss_dssp             BTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             ccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence                   567777765 5443322 233456889999    98833444445688999999862 22110  1111   1


Q ss_pred             c-CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc-EEEEEeCCCcE
Q 018293          208 A-ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLATGSTDKMV  285 (358)
Q Consensus       208 ~-~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i  285 (358)
                      . ..+..+++++++ +++++...++.|.+||..++         .....+..+...+.+++++|++ + ++++...++.|
T Consensus       224 ~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g---------~~~~~~~~~~~~~~~i~~~~dg-~~l~v~~~~~~~l  292 (314)
T 1pjx_A          224 HEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGG---------QPKMRIRCPFEKPSNLHFKPQT-KTIFVTEHENNAV  292 (314)
T ss_dssp             SSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCB---------SCSEEEECSSSCEEEEEECTTS-SEEEEEETTTTEE
T ss_pred             CCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCC---------cEeEEEeCCCCCceeEEECCCC-CEEEEEeCCCCeE
Confidence            1 457789999954 57777667889999998755         4445555566778999999998 6 55555567889


Q ss_pred             EEEecCCC
Q 018293          286 KLWDLSNN  293 (358)
Q Consensus       286 ~i~d~~~~  293 (358)
                      ..|++...
T Consensus       293 ~~~~~~~~  300 (314)
T 1pjx_A          293 WKFEWQRN  300 (314)
T ss_dssp             EEEECSSC
T ss_pred             EEEeCCCC
Confidence            99998653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.50  E-value=8.8e-12  Score=114.74  Aligned_cols=244  Identities=11%  Similarity=0.056  Sum_probs=151.9

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeee-cCCccccCCCceEEecCCCC-----
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWL-DCPLKDREKGNFMAVGSMEP-----   75 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~l~~g~~dg-----   75 (358)
                      .+||+|+.|+.+...+......+++++...+.   ....+          +.+. ..+++|+ ||+.|+.++.+.     
T Consensus       135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~---~~~~~----------~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQ---PLETP----------LKDVKFSGISWL-GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEEEETTTCS---EEEEE----------EEEEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred             EECCCCCEEEEEEecCCCceEEEEEEECCCCC---CCccc----------cCCceeccEEEe-CCCEEEEEEecCccccc
Confidence            68999999998876553334789999988762   22111          1111 1245569 999898887764     


Q ss_pred             --------eEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCC-CcccEEEEecCCCCCcEEEEEEcC--
Q 018293           76 --------AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS-HTDSVLGLAWNKEFRNILASASAD--  144 (358)
Q Consensus        76 --------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d--  144 (358)
                              .|++|++.+.....                       ..+..... |...+..+.|+|++..++++.+.+  
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~-----------------------~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~  257 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDD-----------------------RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTS  257 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGC-----------------------EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSS
T ss_pred             ccccCCCcEEEEEECCCCcccc-----------------------eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCC
Confidence                    38889886543211                       11112223 445578899999965444554432  


Q ss_pred             -CeEEEEECCCCc-eeeeecccccceeeEEEcCCCCcEEEEEeCC---CcEEEEEcccCCCc--cceeeecCCeeeEEEc
Q 018293          145 -KQVKIWDVAAGK-CNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTHS--GFKWAVAADVESLAWD  217 (358)
Q Consensus       145 -g~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~  217 (358)
                       +.|.++|+.++. ....+..+....... |++++..+++.+..+   +.|..+|+.++...  .....+...+.  .|+
T Consensus       258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s  334 (693)
T 3iuj_A          258 GNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVH  334 (693)
T ss_dssp             CCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEE
T ss_pred             CcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEE
Confidence             589999998763 344555555555544 667774666666554   57899999876541  22334444443  788


Q ss_pred             CCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEe-ecCCceeEEEecCCCCcEEEEEeCC---CcEEEEecC
Q 018293          218 PHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYNPLVPNLLATGSTD---KMVKLWDLS  291 (358)
Q Consensus       218 ~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d---g~i~i~d~~  291 (358)
                      +++..++++...++  .|++||+...          ....+. .....+..+.++|++..++++.+..   +.+..||+.
T Consensus       335 ~~g~~lv~~~~~~g~~~l~~~d~~g~----------~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~  404 (693)
T 3iuj_A          335 SGSGYLFAEYMVDATARVEQFDYEGK----------RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK  404 (693)
T ss_dssp             EETTEEEEEEEETTEEEEEEECTTSC----------EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EECCEEEEEEEECCeeEEEEEECCCC----------eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence            87665555556666  6888887643          223332 2345677888888885555554432   789999998


Q ss_pred             CCCc
Q 018293          292 NNQP  295 (358)
Q Consensus       292 ~~~~  295 (358)
                      +++.
T Consensus       405 ~g~~  408 (693)
T 3iuj_A          405 SGAI  408 (693)
T ss_dssp             TCCE
T ss_pred             CCeE
Confidence            8764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.48  E-value=1.1e-10  Score=98.77  Aligned_cols=245  Identities=9%  Similarity=-0.023  Sum_probs=146.9

Q ss_pred             CcccCCCcEEEEEEecCC-----CceEEEEEEeccCCCCCceEeeceeecC--CcccceeeecCCccccCCCceEEecCC
Q 018293            1 MTINPNDAVIVCARNEDD-----VSHLEVYILEESDGGDPNLYVHHHIIIP--AFPLCMAWLDCPLKDREKGNFMAVGSM   73 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~g~~   73 (358)
                      +.++|+|+.+.++....+     ...-.+.+|+....   ...  ....++  ...... -.|..+.++|||++|+++..
T Consensus        71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~---~~~--~~i~~~~~~~~~~g-~~p~~~~~spDG~~l~v~n~  144 (373)
T 2mad_H           71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF---LPI--ADIELPDAPRFDVG-PYSWMNANTPNNADLLFFQF  144 (373)
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC---cEE--EEEECCCccccccC-CCccceEECCCCCEEEEEec
Confidence            578999999999963100     00126778887643   111  111111  000000 01224455999999998874


Q ss_pred             --CCeEEEEEcccccCcCc-eeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEE
Q 018293           74 --EPAIEIWDLDVIDEVQP-HVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  150 (358)
Q Consensus        74 --dg~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  150 (358)
                        ++.|.++| .+++.... ..                            ...   ++.+.|++...+++.+.||.+.++
T Consensus       145 ~~~~~v~viD-~t~~~~~~~i~----------------------------~~~---~~~~~~~~~~~~~~~~~dg~~~~v  192 (373)
T 2mad_H          145 AAGPAVGLVV-QGGSSDDQLLS----------------------------SPT---CYHIHPGAPSTFYLLCAQGGLAKT  192 (373)
T ss_pred             CCCCeEEEEE-CCCCEEeEEcC----------------------------CCc---eEEEEeCCCceEEEEcCCCCEEEE
Confidence              57899999 86544321 10                            111   244556656677888899999999


Q ss_pred             ECCCCceeeeec-----ccccce-eeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-ceee-----------ecCCee
Q 018293          151 DVAAGKCNLTLE-----HHTDKV-QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWA-----------VAADVE  212 (358)
Q Consensus       151 d~~~~~~~~~~~-----~~~~~v-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~-----------~~~~i~  212 (358)
                      |. +++......     ....++ ....+.+++..++++ +..+.+.+.|+....... ....           ......
T Consensus       193 d~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~  270 (373)
T 2mad_H          193 DH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQ  270 (373)
T ss_pred             EC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceE
Confidence            99 877653321     111221 234566666344444 467899999986543211 0111           122244


Q ss_pred             eEEEcCCCCCeEEEEe---------cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe-CC
Q 018293          213 SLAWDPHAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TD  282 (358)
Q Consensus       213 ~~~~~~~~~~~~~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~d  282 (358)
                      .+.++|++..++++..         .++.|.++|..+.         +.+..+.. .....+++|+|++..+++++. .+
T Consensus       271 ~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---------~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~  340 (373)
T 2mad_H          271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---------QTSSQISL-GHDVDAISVAQDGGPDLYALSAGT  340 (373)
T ss_pred             eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---------EEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCC
Confidence            4788997664444432         1357999999886         55566643 335789999999943777776 58


Q ss_pred             CcEEEEecCCCCc
Q 018293          283 KMVKLWDLSNNQP  295 (358)
Q Consensus       283 g~i~i~d~~~~~~  295 (358)
                      +.|.++|..+++.
T Consensus       341 ~~V~ViD~~t~~v  353 (373)
T 2mad_H          341 EVLHIYDAGAGDQ  353 (373)
T ss_pred             CeEEEEECCCCCE
Confidence            9999999999884

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.48  E-value=3.6e-11  Score=100.72  Aligned_cols=265  Identities=10%  Similarity=0.027  Sum_probs=155.7

Q ss_pred             CcccCCCcEEEEEEecCC-----CceEEEEEEeccCCCCCceEeeceeecCC-cccceeeecCCccccCCCceEEecCC-
Q 018293            1 MTINPNDAVIVCARNEDD-----VSHLEVYILEESDGGDPNLYVHHHIIIPA-FPLCMAWLDCPLKDREKGNFMAVGSM-   73 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~g~~-   73 (358)
                      +.++|+|+.+.++..-..     ...-.+.+||....   ...  .+..++. ......-.|..+.|+|||++|+++.. 
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~---~v~--~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~  157 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL---LPT--ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS  157 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC---CEE--EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC---eEE--EEEECCCccccccCCCCceEEEcCCCCEEEEEEcC
Confidence            468999999988853100     01226888998764   221  1111211 00000001224456999999988764 


Q ss_pred             -CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEEC
Q 018293           74 -EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  152 (358)
Q Consensus        74 -dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  152 (358)
                       ++.|.++|+.+.+....+.+.                         +      |....|.+...+++.+.||.+.+.++
T Consensus       158 ~~~~VsVID~~t~~vv~tI~v~-------------------------g------~~~~~P~g~~~~~~~~~DG~~~~v~~  206 (386)
T 3sjl_D          158 PAPAVGVVDLEGKAFKRMLDVP-------------------------D------CYHIFPTAPDTFFMHCRDGSLAKVAF  206 (386)
T ss_dssp             SSCEEEEEETTTTEEEEEEECC-------------------------S------EEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEECC-------------------------C------cceeecCCCceeEEECCCCCEEEEEC
Confidence             689999999876544432210                         1      11123444567778888999999998


Q ss_pred             CC-Cceeeeeccc----cccee-eEEEc-CCCCcEEEEEeCCCcEEEEEcccCCCc--ccee----------eecCCeee
Q 018293          153 AA-GKCNLTLEHH----TDKVQ-AVAWN-HHSPQILLSGSFDRSVVMKDARISTHS--GFKW----------AVAADVES  213 (358)
Q Consensus       153 ~~-~~~~~~~~~~----~~~v~-~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~----------~~~~~i~~  213 (358)
                      .+ ++.......+    ..++. ...|. ++| +++ ..+.+|.+.+.|+......  ....          -.......
T Consensus       207 ~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~  284 (386)
T 3sjl_D          207 GTEGTPEITHTEVFHPEDEFLINHPAYSQKAG-RLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ  284 (386)
T ss_dssp             CSSSCCEEEECCCCSCTTSCBCSCCEEETTTT-EEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSC
T ss_pred             CCCCeEEEeecceeccccccccccceeEcCCC-cEE-EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcce
Confidence            76 5542211111    12222 23554 555 444 4666899999999765421  1110          01234556


Q ss_pred             EEEcCCCCCeEEEEec---------CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE-eCCC
Q 018293          214 LAWDPHAEHSFVVSLE---------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG-STDK  283 (358)
Q Consensus       214 ~~~~~~~~~~~~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~-~~dg  283 (358)
                      ++++++++.++++-..         .+.|.++|+.+.         +.+..+... ..+.++++++++..+|++. ..++
T Consensus       285 ~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~---------kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~  354 (386)
T 3sjl_D          285 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---------ERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDK  354 (386)
T ss_dssp             EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------CEEEEEEEE-EEECEEEECSSSSCEEEEEETTTT
T ss_pred             eeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC---------eEEEEEECC-CCcceEEECCCCCeEEEEEcCCCC
Confidence            8888866644444321         257999999987         556665543 3678999999984466664 4589


Q ss_pred             cEEEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293          284 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       284 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                      .|.++|..+++........+|..   .|.+++|
T Consensus       355 ~VsViD~~t~k~~~~i~~~~~p~---~l~~s~d  384 (386)
T 3sjl_D          355 TLYIHDAESGEELRSVNQLGHGP---QVITTAD  384 (386)
T ss_dssp             EEEEEETTTCCEEEEECCCCSSC---CEEEECC
T ss_pred             eEEEEECCCCcEEEEecCCCCCc---eeEECCc
Confidence            99999999998544444444433   3455554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.47  E-value=5.8e-11  Score=97.67  Aligned_cols=208  Identities=9%  Similarity=0.058  Sum_probs=137.4

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  200 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  200 (358)
                      +..-..+..|+++++.++++...++.|..||..+++. ..+. ....+.++++++++ ++++ +. ++.|.+||..+++.
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG-~l~v-~~-~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSG-GYVA-TI-GTKFCALNWKEQSA   85 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTS-SEEE-EE-TTEEEEEETTTTEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCC-CEEE-EE-CCeEEEEECCCCcE
Confidence            3345668889997677788888889999999987764 3333 45678999999999 6444 44 56799999876654


Q ss_pred             ccceee----ecCCeeeEEEcCCCCCeEEEEecC---------CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEE
Q 018293          201 SGFKWA----VAADVESLAWDPHAEHSFVVSLED---------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS  267 (358)
Q Consensus       201 ~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  267 (358)
                      ......    ....+..++++|++. ++++....         ..-.+|.+...         .....+..+....+.++
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~---------g~~~~~~~~~~~pngi~  155 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD---------HHVKKYFDQVDISNGLD  155 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT---------SCEEEEEEEESBEEEEE
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC---------CCEEEEeeccccccceE
Confidence            321111    123478899999654 55543221         23345555432         11222333344568999


Q ss_pred             ecCCCCcEEEEEeCCCcEEEEec--CCCCce---eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          268 YNPLVPNLLATGSTDKMVKLWDL--SNNQPS---CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       268 ~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      |+|++..++++.+.++.|.+|++  .++...   ....+..+......++++++|. ++++...++.|..||..+++.+.
T Consensus       156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCCEEE
T ss_pred             EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCceEEE
Confidence            99998445566677889999997  344321   1223333445688999999998 67777777889999998887665


Q ss_pred             cc
Q 018293          343 NR  344 (358)
Q Consensus       343 ~~  344 (358)
                      ..
T Consensus       235 ~i  236 (297)
T 3g4e_A          235 TV  236 (297)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.45  E-value=2.7e-11  Score=104.07  Aligned_cols=200  Identities=13%  Similarity=0.068  Sum_probs=137.2

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC--cEEEEEcccCCC
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTH  200 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~  200 (358)
                      .....|+|+++ ++++++...++.|++||.++++....... ..... ++|++++ ..++++..++  .|.+++......
T Consensus       131 ~~P~~la~d~~-g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          131 KYMWGIAAVGN-NTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCEEEEEECST-TEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             CCceEEEEeCC-CCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCce
Confidence            46889999998 56777777779999999988776554443 23334 9999999 7777777765  788888776544


Q ss_pred             ccce----eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-----eecCCc--eeEEEec
Q 018293          201 SGFK----WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-----HAHDKA--VCTISYN  269 (358)
Q Consensus       201 ~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~--i~~i~~~  269 (358)
                      ....    ......+.+++++|+++ .++++..++.|+.||....         . ...+     .++...  ...++|+
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~---------~-~~~~~~~~~~g~~~~~P~~~ia~~  275 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVKTQ---------E-VTLIKQLELSGSLGTNPGPYLIYY  275 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSS-EEEEECTTCEEEEEETTTC---------C-EEEEEECCCCSCCCCSSCCEEEEE
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECCCC---------C-EEEEecccccCCCCCCccccEEEe
Confidence            2222    11345678999999555 4555777889999998765         2 1111     111111  1399999


Q ss_pred             CCCCcEEEEEeCCCcEEEEecCCCCceeeEecC---C---------CCceeEEEEEcCCCCeEEEEEc-cCCeEEEEEcc
Q 018293          270 PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN---P---------KAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTL  336 (358)
Q Consensus       270 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~---------~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vw~~~  336 (358)
                      |+++.++++-..++.|+.|+..... ..+....   +         .-.....++++++|+ ++++-. .++.|+.|++.
T Consensus       276 p~~g~lyv~d~~~~~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~  353 (409)
T 3hrp_A          276 FVDSNFYMSDQNLSSVYKITPDGEC-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDIL  353 (409)
T ss_dssp             TTTTEEEEEETTTTEEEEECTTCCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETT
T ss_pred             CCCCEEEEEeCCCCEEEEEecCCCE-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECC
Confidence            9654777777778899999976542 1111111   0         013478899999999 788887 88999999987


Q ss_pred             CCC
Q 018293          337 SDA  339 (358)
Q Consensus       337 ~~~  339 (358)
                      +++
T Consensus       354 ~G~  356 (409)
T 3hrp_A          354 DGY  356 (409)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.44  E-value=1.5e-11  Score=103.32  Aligned_cols=247  Identities=11%  Similarity=0.064  Sum_probs=148.2

Q ss_pred             CccccCCCceEEecC--CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCC
Q 018293           58 PLKDREKGNFMAVGS--MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  135 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  135 (358)
                      .++++++|+++++..  .++.++||.++++. +.+.   ...                 .....+|-..+..++++++ +
T Consensus        21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~---p~~-----------------~~~~~~~~~~p~gv~~d~~-g   78 (343)
T 2qe8_A           21 NITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPF---PPQ-----------------SGNAIITFDTVLGIKSDGN-G   78 (343)
T ss_dssp             EEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEES---CCC-----------------CSSCCCCCSCEEEEEECSS-S
T ss_pred             eEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecC---CCc-----------------ccCcccceeEeeEEEEcCC-C
Confidence            345589999998853  23446677765221 1110   000                 0012246678999999999 5


Q ss_pred             cEEEEEEc-----CCeEEEEECCCCceeeeeccc------ccceeeEEEcCCCCcEEEEEe---CCCcEEEEEcccCCCc
Q 018293          136 NILASASA-----DKQVKIWDVAAGKCNLTLEHH------TDKVQAVAWNHHSPQILLSGS---FDRSVVMKDARISTHS  201 (358)
Q Consensus       136 ~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~  201 (358)
                      +++++-..     ++.|.+||+.+++.+..+...      ...+..+++++++...+++..   .++.|.+||+.+++..
T Consensus        79 ~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~  158 (343)
T 2qe8_A           79 IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA  158 (343)
T ss_dssp             EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE
T ss_pred             cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE
Confidence            55555433     578999999999876665421      235688999986535555555   6789999998765432


Q ss_pred             cceee-----------------------------ecCCeeeEEEcCCCCCeEEEEecCC-eEEEEEcccCCCCCCCCCCC
Q 018293          202 GFKWA-----------------------------VAADVESLAWDPHAEHSFVVSLEDG-TIKGFDIRTAKSDPDSTSQQ  251 (358)
Q Consensus       202 ~~~~~-----------------------------~~~~i~~~~~~~~~~~~~~~~~~dg-~i~i~d~~~~~~~~~~~~~~  251 (358)
                      .....                             ....+..++|+|++. .++.+..++ .+..++........ .....
T Consensus       159 r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~-~~~~~  236 (343)
T 2qe8_A          159 RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQ-LTDAE  236 (343)
T ss_dssp             EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC-EEEEEESSCSEEEEEEHHHHTCTT-CCHHH
T ss_pred             EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCC-CChhh
Confidence            21100                             012357899999654 566655544 56555543211000 00000


Q ss_pred             --ccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCe
Q 018293          252 --SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK  329 (358)
Q Consensus       252 --~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  329 (358)
                        ......++......++++++| +++++...++.|.+||..+++...+.. ..+.....+++|.+++. ++++.+..+.
T Consensus       237 ~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~~~~~~-~~~~~~p~~va~~~~g~-l~v~~~~~~~  313 (343)
T 2qe8_A          237 LGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAYKLLVT-DEKLSWTDSFNFGSDGY-LYFDCNQLHH  313 (343)
T ss_dssp             HHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEEEEEEE-CGGGSCEEEEEECTTSC-EEEEECCGGG
T ss_pred             hhcceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCEEEEEE-CCceecCCeeEECCCCc-EEEEeCcccc
Confidence              001222344456789999998 888888889999999985555322222 12245688999999988 6777665444


Q ss_pred             EE
Q 018293          330 LE  331 (358)
Q Consensus       330 i~  331 (358)
                      +.
T Consensus       314 ~~  315 (343)
T 2qe8_A          314 SA  315 (343)
T ss_dssp             SG
T ss_pred             cc
Confidence            43

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.39  E-value=1.9e-11  Score=102.44  Aligned_cols=239  Identities=10%  Similarity=-0.053  Sum_probs=138.0

Q ss_pred             eEEecCCCC----eEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293           67 FMAVGSMEP----AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  142 (358)
Q Consensus        67 ~l~~g~~dg----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  142 (358)
                      .+++-..++    .|.++|..+.+.+.....                          +. .+  .+.++|++..+.++.+
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~v--------------------------G~-~P--~i~~spDg~~lyVan~   84 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLG--------------------------AF-LS--LAVAGHSGSDFALAST   84 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEE--------------------------CT-TC--EEEECTTSSCEEEEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeC--------------------------CC-CC--ceEECCCCCEEEEEcc
Confidence            444444444    888999987665543322                          22 34  7999999654444432


Q ss_pred             ---------cCCeEEEEECCCCceeeeeccc-------ccceeeEEEcCCCCcEEEEEeC--CCcEEE--EEcccCCCcc
Q 018293          143 ---------ADKQVKIWDVAAGKCNLTLEHH-------TDKVQAVAWNHHSPQILLSGSF--DRSVVM--KDARISTHSG  202 (358)
Q Consensus       143 ---------~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~  202 (358)
                               .++.|.+||+.+++.+.++...       ......+.++|+| ++++++..  +..+.+  +|+.+   ..
T Consensus        85 ~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDG-k~lyVan~~~~~~v~V~~iD~~t---v~  160 (368)
T 1mda_H           85 SFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS-ACLLFFLFGSSAAAGLSVPGASD---DQ  160 (368)
T ss_dssp             EETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTS-SCEEEEECSSSCEEEEEETTTEE---EE
T ss_pred             cccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCC-CEEEEEccCCCCeEEEEEEchhh---ce
Confidence                     4789999999999999888643       1346789999999 66666654  456888  88876   11


Q ss_pred             ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc-----CCCCCC----CC---------CC--------CccEEE
Q 018293          203 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT-----AKSDPD----ST---------SQ--------QSSFTL  256 (358)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~-----~~~~~~----~~---------~~--------~~~~~~  256 (358)
                       .......   ..+.|++...+++.+.||.+.+.|+..     ++....    ..         ..        ..+..+
T Consensus       161 -~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~vi  236 (368)
T 1mda_H          161 -LTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQG  236 (368)
T ss_dssp             -EEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEE
T ss_pred             -EEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEE
Confidence             1111000   111222333333333444444444433     110000    00         00        000000


Q ss_pred             ee--------------------c---CCceeEEEecCCCCcEEEEEe---C-----CCcEEEEecCCCCceeeEecCCCC
Q 018293          257 HA--------------------H---DKAVCTISYNPLVPNLLATGS---T-----DKMVKLWDLSNNQPSCIASRNPKA  305 (358)
Q Consensus       257 ~~--------------------~---~~~i~~i~~~~~~~~~l~~~~---~-----dg~i~i~d~~~~~~~~~~~~~~~~  305 (358)
                      ..                    +   ......++++|++.+++++..   .     ++.+.++|+.+.+.  +..+.. .
T Consensus       237 D~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v--v~~i~v-g  313 (368)
T 1mda_H          237 DIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT--SGPISN-G  313 (368)
T ss_dssp             ECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE--EECCEE-E
T ss_pred             ECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE--EEEEEC-C
Confidence            00                    0   011122679999844444433   2     23566999999874  333332 2


Q ss_pred             ceeEEEEEcCCCCeEEEEEc-cCCeEEEEEccCCCcccccc
Q 018293          306 GAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       306 ~~v~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~  345 (358)
                      .....++|+|||++++++.. .++.|.++|+.+++.+.+.-
T Consensus       314 ~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~  354 (368)
T 1mda_H          314 HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence            35788999999987788777 69999999999999876654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.39  E-value=1.3e-10  Score=95.97  Aligned_cols=225  Identities=14%  Similarity=0.093  Sum_probs=137.5

Q ss_pred             ccccCCCc-eEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           59 LKDREKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        59 ~~~s~~~~-~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      +.|+++|+ +++++..++.|..|+.. ++ ..                           .+..+...+..++++++ +++
T Consensus        50 p~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~---------------------------~~~~~~~~~~gl~~d~d-G~l   99 (305)
T 3dr2_A           50 PAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD---------------------------VLLDATAFTNGNAVDAQ-QRL   99 (305)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEETT-SC-EE---------------------------EEEESCSCEEEEEECTT-SCE
T ss_pred             CeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE---------------------------EEeCCCCccceeeECCC-CCE
Confidence            34588988 67778888999999873 21 11                           11124456889999999 556


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeecc----cccceeeEEEcCCCCcEEEE----EeC-------------CCcEEEEEcc
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEH----HTDKVQAVAWNHHSPQILLS----GSF-------------DRSVVMKDAR  196 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~  196 (358)
                      +++...++.|.+|+.. ++.......    ....+..+++.++| .++++    +..             .+.|..+|..
T Consensus       100 ~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~  177 (305)
T 3dr2_A          100 VHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD  177 (305)
T ss_dssp             EEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred             EEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence            6655556789999976 543222211    11346789999999 76665    321             2567777776


Q ss_pred             cCCCccceeeecCCeeeEEEcCCCCCeEEEEecC------CeEEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEec
Q 018293          197 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED------GTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYN  269 (358)
Q Consensus       197 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~  269 (358)
                      +++.....  .......++|+|++. .++++...      +.|..||+.....       .....+ .........+++.
T Consensus       178 ~g~~~~~~--~~~~p~gl~~spdg~-~lyv~~~~~~~~~~~~i~~~~~~~~~l-------~~~~~~~~~~~~~pdgi~~d  247 (305)
T 3dr2_A          178 GSPLQRMA--DLDHPNGLAFSPDEQ-TLYVSQTPEQGHGSVEITAFAWRDGAL-------HDRRHFASVPDGLPDGFCVD  247 (305)
T ss_dssp             SCCCEEEE--EESSEEEEEECTTSS-EEEEEECCC---CCCEEEEEEEETTEE-------EEEEEEECCSSSCCCSEEEC
T ss_pred             CCcEEEEe--cCCCCcceEEcCCCC-EEEEEecCCcCCCCCEEEEEEecCCCc-------cCCeEEEECCCCCCCeEEEC
Confidence            66544322  445678899999655 45555444      7899999875410       000111 1123345678999


Q ss_pred             CCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEE
Q 018293          270 PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  334 (358)
Q Consensus       270 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~  334 (358)
                      ++| ++ .+++.+ .|.+|+.. ++.  ...+.... .+.+++|.++++.+++ ++.+ .+..++
T Consensus       248 ~~G-~l-wv~~~~-gv~~~~~~-g~~--~~~~~~~~-~~~~~~f~~d~~~L~i-t~~~-~l~~~~  303 (305)
T 3dr2_A          248 RGG-WL-WSSSGT-GVCVFDSD-GQL--LGHIPTPG-TASNCTFDQAQQRLFI-TGGP-CLWMLP  303 (305)
T ss_dssp             TTS-CE-EECCSS-EEEEECTT-SCE--EEEEECSS-CCCEEEECTTSCEEEE-EETT-EEEEEE
T ss_pred             CCC-CE-EEecCC-cEEEECCC-CCE--EEEEECCC-ceeEEEEeCCCCEEEE-EcCC-eEEEEE
Confidence            988 54 444444 49999984 442  22332223 4788999999886555 4444 344333

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.37  E-value=9.1e-10  Score=88.98  Aligned_cols=207  Identities=8%  Similarity=0.045  Sum_probs=134.8

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  202 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  202 (358)
                      ..+..++|+++++.++++-..++.|..+++........+.........+++++++..++++-...+.|.++++.......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            45789999997566666666778999999876544333332234678999999764666666667899999986543222


Q ss_pred             ceeeecCCeeeEEEcCCCCCeEEEEec--CCeEEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecCCCCcEEEEE
Q 018293          203 FKWAVAADVESLAWDPHAEHSFVVSLE--DGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATG  279 (358)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~  279 (358)
                      ...........++++|+++.++++...  .+.|..+++...         . ...+ .........++++|+++.++++-
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~---------~-~~~~~~~~~~~P~gia~d~~~~~lyv~d  185 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT---------N-RRILAQDNLGLPNGLTFDAFSSQLCWVD  185 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC---------C-CEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC---------C-cEEEEECCCCCCcEEEEcCCCCEEEEEE
Confidence            111112467899999966645555433  468888887643         1 1222 12234568999999874566666


Q ss_pred             eCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          280 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       280 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      ...+.|.++|...........  .. .....++..  +.+++++....+.|.++|..+++.+...
T Consensus       186 ~~~~~I~~~~~~g~~~~~~~~--~~-~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i  245 (267)
T 1npe_A          186 AGTHRAECLNPAQPGRRKVLE--GL-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (267)
T ss_dssp             TTTTEEEEEETTEEEEEEEEE--CC-CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEecCCCceEEEec--CC-CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence            667889999997654222222  21 223556654  4557777777789999999988876654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.36  E-value=7.9e-10  Score=94.30  Aligned_cols=248  Identities=10%  Similarity=0.046  Sum_probs=150.0

Q ss_pred             CcccCCCcEEEEEEecCC-----CceEEEEEEeccCCCCCceEeeceeecC-CcccceeeecCCccccCCCceEEecCC-
Q 018293            1 MTINPNDAVIVCARNEDD-----VSHLEVYILEESDGGDPNLYVHHHIIIP-AFPLCMAWLDCPLKDREKGNFMAVGSM-   73 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~~-   73 (358)
                      |.++|+++.++++.....     ...-.+.++|....   ...  .+..++ .......-.|..+.|+|||++|+++.. 
T Consensus       123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~---~vv--~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~  197 (426)
T 3c75_H          123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF---LPI--ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS  197 (426)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC---CEE--EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC---cEE--EEEECCCccccccCCCcceEEEcCCCCEEEEEecC
Confidence            468999999999864100     01227888888764   221  112221 000000011234566999999998864 


Q ss_pred             -CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEEC
Q 018293           74 -EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  152 (358)
Q Consensus        74 -dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  152 (358)
                       ++.|.+.|+.+.+....+.+                          +.     +....|++...+++.+.||.+.+.+.
T Consensus       198 ~~~~VsVID~~t~kvv~~I~v--------------------------~g-----~~~~~p~g~~~~v~~~~dG~~~~V~~  246 (426)
T 3c75_H          198 PAPAVGVVDLEGKTFDRMLDV--------------------------PD-----CYHIFPASPTVFYMNCRDGSLARVDF  246 (426)
T ss_dssp             SSCEEEEEETTTTEEEEEEEC--------------------------CS-----EEEEEEEETTEEEEEETTSSEEEEEC
T ss_pred             CCCeEEEEECCCCeEEEEEEc--------------------------CC-----ceeeccCCCcEEEEEcCCCCEEEEEC
Confidence             58999999987554432211                          00     12234444556777778888888888


Q ss_pred             CCCceee----eecccccce-eeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc-ee-----------eecCCeeeEE
Q 018293          153 AAGKCNL----TLEHHTDKV-QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KW-----------AVAADVESLA  215 (358)
Q Consensus       153 ~~~~~~~----~~~~~~~~v-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~-----------~~~~~i~~~~  215 (358)
                      .+++...    .+.....++ ..+.+.+++ ..++..+..+.+.+.|......... .+           ........++
T Consensus       247 ~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va  325 (426)
T 3c75_H          247 ADGETKVTNTEVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTA  325 (426)
T ss_dssp             CTTCCEEEECCCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEE
T ss_pred             CCCcEEEEeeeeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeE
Confidence            6655442    122112222 235678888 5555566788999999865432110 00           1122333478


Q ss_pred             EcCCCCCeEEEEec---------CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe-CCCcE
Q 018293          216 WDPHAEHSFVVSLE---------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMV  285 (358)
Q Consensus       216 ~~~~~~~~~~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i  285 (358)
                      ++|++..++++...         ++.|.++|..+.         +.+..+.... ...++.|+|++..++++.. .++.|
T Consensus       326 ~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~---------kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~V  395 (426)
T 3c75_H          326 YHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG---------ERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTL  395 (426)
T ss_dssp             EEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------CEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEE
T ss_pred             EcCCCCEEEEEecccccccccCCCCEEEEEECCCC---------eEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeE
Confidence            99976654554331         357999999987         6666665432 4789999999942777777 58999


Q ss_pred             EEEecCCCCc
Q 018293          286 KLWDLSNNQP  295 (358)
Q Consensus       286 ~i~d~~~~~~  295 (358)
                      .++|+.+.+.
T Consensus       396 sVID~~t~kv  405 (426)
T 3c75_H          396 HIYDAATGEE  405 (426)
T ss_dssp             EEEETTTCCE
T ss_pred             EEEECCCCCE
Confidence            9999999984

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.35  E-value=5.6e-09  Score=88.25  Aligned_cols=236  Identities=18%  Similarity=0.116  Sum_probs=139.6

Q ss_pred             ccc--CCCceEEe-cCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceecccccc-CCCcccEEEEecCCCCC
Q 018293           60 KDR--EKGNFMAV-GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKK-GSHTDSVLGLAWNKEFR  135 (358)
Q Consensus        60 ~~s--~~~~~l~~-g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~  135 (358)
                      .++  +++++|++ |..++.|+|+|+.+.... +...                +........ .........+...|+ +
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~-p~~~----------------k~ie~~~~~~~~g~s~Ph~~~~~pd-G  149 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPRE-PKII----------------KVIEPEEVKKVSGYSRLHTVHCGPD-A  149 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTS-CEEE----------------EEECHHHHHHHHCEEEEEEEEECSS-C
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCC-ceee----------------eeechhhcccccCCCcccceeECCC-e
Confidence            346  77777654 667899999998643111 1000                000000000 001123456677899 4


Q ss_pred             cEEEEEEcC------CeEEEEECCCCceeeeeccccc---ceeeEEEcCCCCcEEEEEe-------------------CC
Q 018293          136 NILASASAD------KQVKIWDVAAGKCNLTLEHHTD---KVQAVAWNHHSPQILLSGS-------------------FD  187 (358)
Q Consensus       136 ~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~-------------------~d  187 (358)
                       +++++..+      |.|.+.|.++++.+.++.....   .-..+.|+|++ +.++++.                   .+
T Consensus       150 -i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~  227 (462)
T 2ece_A          150 -IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYG  227 (462)
T ss_dssp             -EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSC
T ss_pred             -EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccC
Confidence             67777666      7899999999999888863222   23458889999 6777774                   37


Q ss_pred             CcEEEEEcccCCCccceeeec---CCeeeEEE--cCCCCCeEEEEe-----cCCeEEEEEcccCCCCCCCCCCCccEE--
Q 018293          188 RSVVMKDARISTHSGFKWAVA---ADVESLAW--DPHAEHSFVVSL-----EDGTIKGFDIRTAKSDPDSTSQQSSFT--  255 (358)
Q Consensus       188 g~i~i~d~~~~~~~~~~~~~~---~~i~~~~~--~~~~~~~~~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~--  255 (358)
                      .+|.+||+.+.+.... ....   .....+.|  +|++...++++-     .+++|.+|....+..       .....  
T Consensus       228 d~V~v~D~~~~k~~~t-I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~-------~~~~vId  299 (462)
T 2ece_A          228 NRIHFWDLRKRKRIHS-LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW-------NAEKVIE  299 (462)
T ss_dssp             CEEEEEETTTTEEEEE-EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE-------EEEEEEE
T ss_pred             CEEEEEECCCCcEeeE-EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce-------eEEEEEe
Confidence            8999999987644332 2221   23445555  997664444444     677888776654211       11111  


Q ss_pred             Eee----------------cCCceeEEEecCCCCcEEEEEeC-CCcEEEEecCCC-CceeeEecCCC-------------
Q 018293          256 LHA----------------HDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSNN-QPSCIASRNPK-------------  304 (358)
Q Consensus       256 ~~~----------------~~~~i~~i~~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~~~~-------------  304 (358)
                      +..                -......|.++||+ ++|+++.. .+.|.+||+... ++..+......             
T Consensus       300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG-rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~  378 (462)
T 2ece_A          300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD-KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK  378 (462)
T ss_dssp             ECCEECCSSCCGGGGGGTEECCCCCCEEECTTS-CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred             CCCccccccccccccccccCCCceeEEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence            111                02346889999999 66665554 788999998633 33233222211             


Q ss_pred             -CceeEEEEEcCCCCeEEEEE
Q 018293          305 -AGAVFSVAFSEDSPFVLAIG  324 (358)
Q Consensus       305 -~~~v~~~~~~~~~~~~l~~~  324 (358)
                       .+.-..++++|||++++++.
T Consensus       379 ~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          379 LTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCCCEEEEcCCCCEEEEEc
Confidence             01256799999999866655

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.35  E-value=1.3e-09  Score=90.75  Aligned_cols=199  Identities=12%  Similarity=0.081  Sum_probs=128.6

Q ss_pred             cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc
Q 018293          124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  203 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  203 (358)
                      -..+..|+|+++.++++...++.|..||..+++.. .+. ....+.++.|++++ +++++ +.+ .|.+||..+++....
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg-~l~v~-~~~-gl~~~d~~~g~~~~~  124 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDS-KQLIA-SDD-GLFLRDTATGVLTLH  124 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTCCEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCC-eEEEE-ECC-CEEEEECCCCcEEEE
Confidence            34677899986777788778899999999877543 333 34678999999998 65554 444 499999877654321


Q ss_pred             eee----ecCCeeeEEEcCCCCCeEEEEec------CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC
Q 018293          204 KWA----VAADVESLAWDPHAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  273 (358)
Q Consensus       204 ~~~----~~~~i~~~~~~~~~~~~~~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  273 (358)
                      ...    ....+..++++|++. ++++...      .+.|..++  ++         . ...+..+......++|+|++.
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g---------~-~~~~~~~~~~~~~i~~s~dg~  191 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KG---------K-VTKLFADISIPNSICFSPDGT  191 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TT---------E-EEEEEEEESSEEEEEECTTSC
T ss_pred             eeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CC---------c-EEEeeCCCcccCCeEEcCCCC
Confidence            111    113578899999654 5544332      24555555  33         2 222223334567899999984


Q ss_pred             cEEEEEeCCCcEEEEecC--CC-Cc---eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          274 NLLATGSTDKMVKLWDLS--NN-QP---SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       274 ~~l~~~~~dg~i~i~d~~--~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      .++++.+.++.|.+||+.  ++ ..   .....+.........++++++|. ++++...++.|.+|+. +++.+.
T Consensus       192 ~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~-~g~~~~  264 (326)
T 2ghs_A          192 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDT-DGNHIA  264 (326)
T ss_dssp             EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECT-TCCEEE
T ss_pred             EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECC-CCCEEE
Confidence            344555567899999986  44 32   12223333445678899999998 5666556688999998 455443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.33  E-value=3.4e-13  Score=114.33  Aligned_cols=185  Identities=15%  Similarity=0.078  Sum_probs=104.1

Q ss_pred             CcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee-cCCeee
Q 018293          135 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-AADVES  213 (358)
Q Consensus       135 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~  213 (358)
                      +..+++++.||.|..||.++|+.+..+..  ..+.+..+..++ ..+++++.||.|+.||..+++........ ...+.+
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            34889999999999999999999888875  455555555666 67777789999999999887664322111 111111


Q ss_pred             -EEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293          214 -LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  292 (358)
Q Consensus       214 -~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~  292 (358)
                       ..+.. + ..+++++.++.++.||.+++         +.+..+..+.    ...++|++ ..+++++.|+.|+.||.++
T Consensus        86 sp~~~~-~-~~v~~g~~dg~v~a~D~~tG---------~~~w~~~~~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~t  149 (369)
T 2hz6_A           86 SPCRSS-D-GILYMGKKQDIWYVIDLLTG---------EKQQTLSSAF----ADSLSPST-SLLYLGRTEYTITMYDTKT  149 (369)
T ss_dssp             CSCC-------CCCCEEEEEEEEECCC------------------------------------EEEEEEEEEEECCCSSS
T ss_pred             CceEec-C-CEEEEEeCCCEEEEEECCCC---------cEEEEecCCC----cccccccC-CEEEEEecCCEEEEEECCC
Confidence             11111 2 36778888999999999988         4444444332    23455665 7888889999999999999


Q ss_pred             CCceeeEecCCCCceeEEEEEcCCC---CeEEEEEccCCeEEEEEccCCCcccc
Q 018293          293 NQPSCIASRNPKAGAVFSVAFSEDS---PFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       293 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      ++..-......    .....+.++.   .. +++++.||.|+.||..+++.+.+
T Consensus       150 G~~~W~~~~~~----~~~~~~~~~~~~~~~-v~~~~~dg~v~a~d~~tG~~~W~  198 (369)
T 2hz6_A          150 RELRWNATYFD----YAASLPEDDVDYKMS-HFVSNGDGLVVTVDSESGDVLWI  198 (369)
T ss_dssp             SSCCCEEEEEE----ECCBCCCCCTTCCCC-EEEEETSCEEEEECTTTCCEEEE
T ss_pred             CCEEEeEeccc----ccCccccCCccccce-EEEECCCCEEEEEECCCCcEEEE
Confidence            87433222211    1223333331   32 55678899999999999887643

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.33  E-value=2.4e-10  Score=104.63  Aligned_cols=249  Identities=12%  Similarity=0.059  Sum_probs=145.6

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCC---CCCcEEEE
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK---EFRNILAS  140 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~l~s  140 (358)
                      .+..+++++.|+.|..+|..+++.........                         +......+..+|   + + .++.
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~-------------------------~~~~~~~~~~sP~v~~-g-~v~v  172 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRA-------------------------DHKRSYTITGAPRVVN-G-KVVI  172 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCS-------------------------CTTSCCBCCSCCEEET-T-EEEE
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcC-------------------------CCCCCccccCCcEEEC-C-EEEE
Confidence            46678888899999999998877654322110                         000000111111   3 3 3444


Q ss_pred             EE------cCCeEEEEECCCCceeeeecccc-------------------------------cceeeEEEcCCCCcEEEE
Q 018293          141 AS------ADKQVKIWDVAAGKCNLTLEHHT-------------------------------DKVQAVAWNHHSPQILLS  183 (358)
Q Consensus       141 ~~------~dg~v~iwd~~~~~~~~~~~~~~-------------------------------~~v~~~~~~~~~~~~l~~  183 (358)
                      ++      .+|.|..||.++|+.+..+....                               .....+.+.|+. .+++.
T Consensus       173 g~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~  251 (689)
T 1yiq_A          173 GNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYI  251 (689)
T ss_dssp             CCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEE
T ss_pred             EeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEE
Confidence            43      37899999999999887764210                               011257788887 67888


Q ss_pred             EeCCCc-------------------EEEEEcccCCCccceeeec---------CCeeeEEEcCCCC--CeEEEEecCCeE
Q 018293          184 GSFDRS-------------------VVMKDARISTHSGFKWAVA---------ADVESLAWDPHAE--HSFVVSLEDGTI  233 (358)
Q Consensus       184 ~~~dg~-------------------i~i~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~--~~~~~~~~dg~i  233 (358)
                      +..++.                   |..+|.++++..-......         ..+.......++.  ..++.++.+|.+
T Consensus       252 ~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l  331 (689)
T 1yiq_A          252 GVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFF  331 (689)
T ss_dssp             ECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEE
T ss_pred             eCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeE
Confidence            877763                   9999999887654322211         1111111111221  268888999999


Q ss_pred             EEEEcccCCCCCCCCCCC-cc-EEEe-----------------ecC-----------CceeEEEecCCCCcEEEEEeC--
Q 018293          234 KGFDIRTAKSDPDSTSQQ-SS-FTLH-----------------AHD-----------KAVCTISYNPLVPNLLATGST--  281 (358)
Q Consensus       234 ~i~d~~~~~~~~~~~~~~-~~-~~~~-----------------~~~-----------~~i~~i~~~~~~~~~l~~~~~--  281 (358)
                      +++|.++++......... .. ..+.                 ...           .....++++|+. .++++...  
T Consensus       332 ~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~yv~~~~~  410 (689)
T 1yiq_A          332 YVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVYIPAHIM  410 (689)
T ss_dssp             EEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEEC
T ss_pred             EEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEEEecccc
Confidence            999999884310000000 00 0000                 000           011236788876 56665422  


Q ss_pred             -------------------------------------------CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCC
Q 018293          282 -------------------------------------------DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP  318 (358)
Q Consensus       282 -------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  318 (358)
                                                                 +|.|..||+.+++.  +.....+ .++....+...+.
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~--~W~~~~~-~~~~~g~~~tagg  487 (689)
T 1yiq_A          411 SAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA--AWEVPYV-TIFNGGTLSTAGN  487 (689)
T ss_dssp             CEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE--EEEEEES-SSCCCCEEEETTT
T ss_pred             ceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe--EeEccCC-CCccCccceECCC
Confidence                                                       37799999999984  3333222 2233334555666


Q ss_pred             eEEEEEccCCeEEEEEccCCCcccccc
Q 018293          319 FVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       319 ~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                       +++.++.||.|+.||.++|+.+.+.-
T Consensus       488 -lvf~gt~dg~l~a~D~~tG~~lw~~~  513 (689)
T 1yiq_A          488 -LVFEGSADGRVIAYAADTGEKLWEQP  513 (689)
T ss_dssp             -EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             -EEEEECCCCcEEEEECCCCccceeee
Confidence             67789999999999999999886543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.28  E-value=1e-09  Score=92.09  Aligned_cols=246  Identities=10%  Similarity=0.038  Sum_probs=141.4

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeecee-ecCCcccceeeecCCccccCCCceEEecCC-----C
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI-IIPAFPLCMAWLDCPLKDREKGNFMAVGSM-----E   74 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-----d   74 (358)
                      ++++|+|+++++...-++ +...++.++  .+   .+...... .....  .+ -.+..++++++|+++++-..     +
T Consensus        22 va~~~~g~~~v~~~~~~~-~~~~l~~~~--~g---~~~~~p~~~~~~~~--~~-~~p~gv~~d~~g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           22 ITLTPDGRLFLSLHQFYQ-PEMQVAELT--QD---GLIPFPPQSGNAII--TF-DTVLGIKSDGNGIVWMLDNGNQSKSV   92 (343)
T ss_dssp             EEECTTSCEEEEECGGGC-CSCSEEEEE--TT---EEEESCCCCSSCCC--CC-SCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred             EEECCCCCEEEEeCCCCC-CceEEEEEC--CC---CeecCCCcccCccc--ce-eEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence            468899999888632211 114566665  22   11100000 00000  00 01224456889887776543     5


Q ss_pred             CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE---cCCeEEEEE
Q 018293           75 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS---ADKQVKIWD  151 (358)
Q Consensus        75 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~dg~v~iwd  151 (358)
                      +.|.+||+.+++......+..                     ....+...+..++++++++..+++..   .++.|.+||
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~---------------------~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d  151 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPP---------------------PITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVD  151 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCT---------------------TTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEE
T ss_pred             CeEEEEECCCCeEEEEEECCh---------------------hhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEE
Confidence            789999987655332211100                     01123345688999987565556655   688999999


Q ss_pred             CCCCceeeeecccc-----------------------------cceeeEEEcCCCCcEEEEEeCCC-cEEEEEcccCCC-
Q 018293          152 VAAGKCNLTLEHHT-----------------------------DKVQAVAWNHHSPQILLSGSFDR-SVVMKDARISTH-  200 (358)
Q Consensus       152 ~~~~~~~~~~~~~~-----------------------------~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~-  200 (358)
                      +.+++..+.+.+|.                             ..+..++|+|++ +.|+.+..++ .+..++...... 
T Consensus       152 ~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~  230 (343)
T 2qe8_A          152 LQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNL  230 (343)
T ss_dssp             TTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCT
T ss_pred             CCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCC
Confidence            98887655543321                             235789999999 6677666555 555555321110 


Q ss_pred             --c-----c--ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe-ecCCceeEEEecC
Q 018293          201 --S-----G--FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYNP  270 (358)
Q Consensus       201 --~-----~--~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~  270 (358)
                        .     .  ...........++++++ ++++++...++.|.+||..++         ....... .+.....++++.+
T Consensus       231 ~~~~~~~~~~~~~~g~~g~pdgia~d~~-G~l~va~~~~~~V~~~d~~~G---------~~~~~~~~~~~~~p~~va~~~  300 (343)
T 2qe8_A          231 QLTDAELGSKIERYSEKPICDGISIDKD-HNIYVGDLAHSAIGVITSADR---------AYKLLVTDEKLSWTDSFNFGS  300 (343)
T ss_dssp             TCCHHHHHTTCEEEEECCSCSCEEECTT-CCEEEEEGGGTEEEEEETTTT---------EEEEEEECGGGSCEEEEEECT
T ss_pred             CCChhhhhcceEecccCCCCceEEECCC-CCEEEEccCCCeEEEEECCCC---------CEEEEEECCceecCCeeEECC
Confidence              0     0  11233446778999995 568888888999999998443         2111111 1234578999999


Q ss_pred             CCCcEEEEEeCCCcEEEE
Q 018293          271 LVPNLLATGSTDKMVKLW  288 (358)
Q Consensus       271 ~~~~~l~~~~~dg~i~i~  288 (358)
                      ++ .++++.+..+.+.+|
T Consensus       301 ~g-~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          301 DG-YLYFDCNQLHHSAPL  317 (343)
T ss_dssp             TS-CEEEEECCGGGSGGG
T ss_pred             CC-cEEEEeCcccccccc
Confidence            87 677776655444433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.27  E-value=4.2e-10  Score=102.82  Aligned_cols=244  Identities=11%  Similarity=0.080  Sum_probs=149.1

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEE-EecCCCCCcEEEEEE
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS  142 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~  142 (358)
                      ++..+++++.|+.|..+|..+++..........               .       .....+.+ .... + + .++.++
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~---------------~-------~~~~~~~~~p~v~-~-~-~v~v~~  181 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEG---------------Q-------KGSLTITGAPRVF-K-G-KVIIGN  181 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTT---------------C-------CSSCBCCSCCEEE-T-T-EEEECC
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcC---------------c-------CcCcccccCcEEE-C-C-EEEEEe
Confidence            466788888999999999988776543221100               0       00001110 0011 2 3 444544


Q ss_pred             c------CCeEEEEECCCCceeeeecccccc--------------------------------eeeEEEcCCCCcEEEEE
Q 018293          143 A------DKQVKIWDVAAGKCNLTLEHHTDK--------------------------------VQAVAWNHHSPQILLSG  184 (358)
Q Consensus       143 ~------dg~v~iwd~~~~~~~~~~~~~~~~--------------------------------v~~~~~~~~~~~~l~~~  184 (358)
                      .      ++.|..+|.++|+.+..+......                                ...++++|++ ..++.+
T Consensus       182 ~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~  260 (677)
T 1kb0_A          182 GGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVG  260 (677)
T ss_dssp             BCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEE
T ss_pred             cccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEE
Confidence            3      799999999999988776532111                                1356788887 677777


Q ss_pred             eCCC-------------------cEEEEEcccCCCccceeee---------cCCeeeEEEcCCCC--CeEEEEecCCeEE
Q 018293          185 SFDR-------------------SVVMKDARISTHSGFKWAV---------AADVESLAWDPHAE--HSFVVSLEDGTIK  234 (358)
Q Consensus       185 ~~dg-------------------~i~i~d~~~~~~~~~~~~~---------~~~i~~~~~~~~~~--~~~~~~~~dg~i~  234 (358)
                      ..++                   .|..+|.++++..-.....         ......+....++.  ..++.++.+|.++
T Consensus       261 ~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~  340 (677)
T 1kb0_A          261 TGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFF  340 (677)
T ss_dssp             CCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEE
T ss_pred             CCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEE
Confidence            6654                   4899999888765422211         11122222222332  5788899999999


Q ss_pred             EEEcccCCCCCCCCCCCccEEEeecC-----------Cc------------------------eeEEEecCCCCcEEEEE
Q 018293          235 GFDIRTAKSDPDSTSQQSSFTLHAHD-----------KA------------------------VCTISYNPLVPNLLATG  279 (358)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~~~~~~~-----------~~------------------------i~~i~~~~~~~~~l~~~  279 (358)
                      ++|..+++         .+.......           .+                        -..++++|+. .++++.
T Consensus       341 ~lD~~tG~---------~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~  410 (677)
T 1kb0_A          341 VLDRTNGK---------FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLP  410 (677)
T ss_dssp             EEETTTCC---------EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEE
T ss_pred             EEECCCCC---------EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEe
Confidence            99999884         332222110           00                        1256788877 566664


Q ss_pred             eC-------------------------------------------CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293          280 ST-------------------------------------------DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       280 ~~-------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                      ..                                           .|.|..||+.+++.  +.... +..++....+..+
T Consensus       411 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~--~W~~~-~~~~~~~g~~~~~  487 (677)
T 1kb0_A          411 AQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA--AWSVE-HVSPWNGGTLTTA  487 (677)
T ss_dssp             EEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE--EEEEE-ESSSCCCCEEEET
T ss_pred             ChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE--EeecC-CCCCCcCcceEeC
Confidence            33                                           27799999999884  33322 2233444456667


Q ss_pred             CCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293          317 SPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       317 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                      +. +++.++.||.+++||..+++.+.+....
T Consensus       488 g~-~v~~g~~dg~l~a~D~~tG~~lw~~~~~  517 (677)
T 1kb0_A          488 GN-VVFQGTADGRLVAYHAATGEKLWEAPTG  517 (677)
T ss_dssp             TT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CC-EEEEECCCCcEEEEECCCCceeeeeeCC
Confidence            77 5677899999999999999998765543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.26  E-value=2.8e-10  Score=99.46  Aligned_cols=246  Identities=11%  Similarity=0.095  Sum_probs=156.5

Q ss_pred             CCCceEEecCC-CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec-C-CCCCcEEE
Q 018293           63 EKGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-N-KEFRNILA  139 (358)
Q Consensus        63 ~~~~~l~~g~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~-~~~~~~l~  139 (358)
                      +||++|.+... ++.|.+.|+++.+......+.                          ....+..+++ + |+ +.+++
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip--------------------------~g~~phg~~~~~~p~-~~~v~  151 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIP--------------------------NAKGIHGLRPQKWPR-SNYVF  151 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECS--------------------------SCCSEEEEEECCSSB-CSEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCC--------------------------CCCCCcceeeeecCC-CcEEE
Confidence            38888776654 567999999876654422111                          2234667777 4 78 44666


Q ss_pred             EEE------------------cCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC-------------
Q 018293          140 SAS------------------ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-------------  188 (358)
Q Consensus       140 s~~------------------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------------  188 (358)
                      +++                  .++.+.+.|.++++...++.-.. ....++++|+| .++++++.+.             
T Consensus       152 ~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~  229 (595)
T 1fwx_A          152 CNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAE  229 (595)
T ss_dssp             EEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCS
T ss_pred             EecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCC-CEEEEEecCcccCcchhhccccc
Confidence            663                  35689999999999888886433 45778899998 6666666442             


Q ss_pred             -------------------------cEEEEEccc--CCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293          189 -------------------------SVVMKDARI--STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  241 (358)
Q Consensus       189 -------------------------~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~  241 (358)
                                               .|.+.|.++  ++.............++.++||+...++++..+.+|.++|+.+.
T Consensus       230 ~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~  309 (595)
T 1fwx_A          230 MDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  309 (595)
T ss_dssp             EEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             cceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence                                     366667666  33212234455678899999988777777778999999999964


Q ss_pred             CCC--CCCCCC-CccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC--------CceeeEecCCCCcee--
Q 018293          242 KSD--PDSTSQ-QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN--------QPSCIASRNPKAGAV--  308 (358)
Q Consensus       242 ~~~--~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~~v--  308 (358)
                      +..  ...... ........ ......++|+|+| ...++.-.|+.|.+||+...        ....+..+..|-.+-  
T Consensus       310 ~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~  387 (595)
T 1fwx_A          310 DAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHL  387 (595)
T ss_dssp             HHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEE
T ss_pred             ccccccccCcccceEEEcCC-CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccc
Confidence            100  000000 11222222 3446889999999 77777778999999999761        111344444443321  


Q ss_pred             ---EEEEEcCCCCeEEEEEccC-CeE-----------EEEEccCCC
Q 018293          309 ---FSVAFSEDSPFVLAIGGSK-GKL-----------EIWDTLSDA  339 (358)
Q Consensus       309 ---~~~~~~~~~~~~l~~~~~d-g~i-----------~vw~~~~~~  339 (358)
                         ..+.++|||++++++.... ..+           .++|+..++
T Consensus       388 ~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          388 KTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             EETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             eeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence               1235689999866655433 334           889995544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.26  E-value=2.7e-12  Score=108.81  Aligned_cols=204  Identities=13%  Similarity=0.052  Sum_probs=108.7

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      ++..+++++.||.|+.||..+++......                           .  +.+.+..+..+ +..+++++.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~---------------------------~--~~~~s~p~~~~-g~~~v~~s~   57 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK---------------------------E--DPVLQVPTHVE-EPAFLPDPN   57 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEE---------------------------C--CCSCCCC------CCEEECTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEec---------------------------C--CCceecceEcC-CCEEEEeCC
Confidence            57889999999999999998776543211                           1  22333334455 456777789


Q ss_pred             CCeEEEEECCCCceeeeeccccc-ceee-EEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCC
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHTD-KVQA-VAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  221 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~~-~v~~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  221 (358)
                      ||.|..||.++++.+..+..+.. .+.+ ..+. .+ ..+++++.++.++.||.++++.........    ...++| .+
T Consensus        58 dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p-~~  130 (369)
T 2hz6_A           58 DGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSP-ST  130 (369)
T ss_dssp             TCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC-------------------------
T ss_pred             CCEEEEEECCCCceeeeeeccCccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccc-cC
Confidence            99999999999987766653321 1111 1111 23 467788889999999999887754332221    234556 44


Q ss_pred             CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC--CcEEEEEeCCCcEEEEecCCCCceeeE
Q 018293          222 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--PNLLATGSTDKMVKLWDLSNNQPSCIA  299 (358)
Q Consensus       222 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~  299 (358)
                      ..+++++.++.|+.||.+++         +.+..+..+.  .....+.++.  ...+++++.||.|+.||..+++.  +.
T Consensus       131 ~~v~~~~~dg~v~a~d~~tG---------~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~--~W  197 (369)
T 2hz6_A          131 SLLYLGRTEYTITMYDTKTR---------ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV--LW  197 (369)
T ss_dssp             --EEEEEEEEEEECCCSSSS---------SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE--EE
T ss_pred             CEEEEEecCCEEEEEECCCC---------CEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcE--EE
Confidence            57888889999999999987         3333332211  1223333321  13567788999999999999884  33


Q ss_pred             ecCCCCceeE-EEEEcCCCC
Q 018293          300 SRNPKAGAVF-SVAFSEDSP  318 (358)
Q Consensus       300 ~~~~~~~~v~-~~~~~~~~~  318 (358)
                      .... ..++. ...++++|.
T Consensus       198 ~~~~-~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          198 IQNY-ASPVVAFYVWQREGL  216 (369)
T ss_dssp             EEEC-SSCEEEEEECTTSSC
T ss_pred             EecC-CCceEEEEEecCCce
Confidence            3322 23333 344555653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.22  E-value=5e-09  Score=83.16  Aligned_cols=199  Identities=9%  Similarity=-0.022  Sum_probs=134.0

Q ss_pred             cEEEEecCCCCCcEEEEEEc--CCeEEEEECCCCceeeeeccccc-ceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293          124 SVLGLAWNKEFRNILASASA--DKQVKIWDVAAGKCNLTLEHHTD-KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  200 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  200 (358)
                      ....+.|+++ +.++++.+.  ++.|+++|+.+++.+..+.-... ....+++.  +..+.++.-.++.+.++|..+.+.
T Consensus        22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v   98 (266)
T 2iwa_A           22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN   98 (266)
T ss_dssp             CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred             CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence            3679999998 545555443  58999999999998888752221 22345554  435666666789999999988766


Q ss_pred             ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec--C---CceeEEEecCCCCcE
Q 018293          201 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--D---KAVCTISYNPLVPNL  275 (358)
Q Consensus       201 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~---~~i~~i~~~~~~~~~  275 (358)
                      ..... .. ......+++++.. ++++..++.|.++|..+.         +....+...  .   ...+.+.|. ++ .+
T Consensus        99 ~~~i~-~g-~~~g~glt~Dg~~-l~vs~gs~~l~viD~~t~---------~v~~~I~Vg~~~~p~~~~nele~~-dg-~l  164 (266)
T 2iwa_A           99 IKNFT-HQ-MKDGWGLATDGKI-LYGSDGTSILYEIDPHTF---------KLIKKHNVKYNGHRVIRLNELEYI-NG-EV  164 (266)
T ss_dssp             EEEEE-CC-SSSCCEEEECSSS-EEEECSSSEEEEECTTTC---------CEEEEEECEETTEECCCEEEEEEE-TT-EE
T ss_pred             EEEEE-CC-CCCeEEEEECCCE-EEEECCCCeEEEEECCCC---------cEEEEEEECCCCcccccceeEEEE-CC-EE
Confidence            55322 22 1122334555554 445557889999999876         444444322  1   135678888 55 55


Q ss_pred             EEEEeCCCcEEEEecCCCCceeeEecCC-----------CCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          276 LATGSTDKMVKLWDLSNNQPSCIASRNP-----------KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       276 l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      .+....++.|.+.|..+++......+.+           .....+.++|+|+++.+++++...+.+.+.++....
T Consensus       165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            5555567899999999998544444321           113568999999998889999999999999987643

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.21  E-value=2.7e-09  Score=87.96  Aligned_cols=202  Identities=10%  Similarity=0.068  Sum_probs=128.4

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  200 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  200 (358)
                      .........|+|++..++++...++.|..|+. +++ ...+..+...+..+++++++ +++++...++.|.+|+.. ++.
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~~  118 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQA  118 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCE
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCC-CEEEEECCCCEEEEECCC-CCE
Confidence            44567789999996557888888899999997 454 34455456778999999998 666655556789999975 332


Q ss_pred             ccceee----ecCCeeeEEEcCCCCCeEEE----Eec-------------CCeEEEEEcccCCCCCCCCCCCccEEEeec
Q 018293          201 SGFKWA----VAADVESLAWDPHAEHSFVV----SLE-------------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAH  259 (358)
Q Consensus       201 ~~~~~~----~~~~i~~~~~~~~~~~~~~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  259 (358)
                      ......    ....+..+++++++ .++++    |..             .+.|..||..++         .... +. .
T Consensus       119 ~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g---------~~~~-~~-~  186 (305)
T 3dr2_A          119 HLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS---------PLQR-MA-D  186 (305)
T ss_dssp             EEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC---------CCEE-EE-E
T ss_pred             EEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCC---------cEEE-Ee-c
Confidence            211111    12346789999965 46664    322             246777776554         2222 22 3


Q ss_pred             CCceeEEEecCCCCcEEEEEeCC------CcEEEEecCCCCceeeEe-cCCCCceeEEEEEcCCCCeEEEEEccCCeEEE
Q 018293          260 DKAVCTISYNPLVPNLLATGSTD------KMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI  332 (358)
Q Consensus       260 ~~~i~~i~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v  332 (358)
                      ....+.++|+|++ +.|+.+...      +.|.+|++.......... .....+....++++++|+ ++++ +.+ .|.+
T Consensus       187 ~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~-~~~-gv~~  262 (305)
T 3dr2_A          187 LDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSS-SGT-GVCV  262 (305)
T ss_dssp             ESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEEC-CSS-EEEE
T ss_pred             CCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEe-cCC-cEEE
Confidence            3456889999998 666665554      689999987543111111 111233455789999998 4553 444 5999


Q ss_pred             EEccCCCcccc
Q 018293          333 WDTLSDAGISN  343 (358)
Q Consensus       333 w~~~~~~~~~~  343 (358)
                      |+. +++.+..
T Consensus       263 ~~~-~g~~~~~  272 (305)
T 3dr2_A          263 FDS-DGQLLGH  272 (305)
T ss_dssp             ECT-TSCEEEE
T ss_pred             ECC-CCCEEEE
Confidence            998 4554443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.19  E-value=9.8e-08  Score=78.95  Aligned_cols=210  Identities=12%  Similarity=0.082  Sum_probs=133.7

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCC----CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAA----GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  198 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  198 (358)
                      ..+..++|++.++.++++-..++.|..+++..    ......+...-.....+++.+.++.++++-...+.|.+.++...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            45789999987566666666678999999876    22222232222456788998765466666677889999998754


Q ss_pred             CCccceeeecCCeeeEEEcCCCCCeEEEEecC-CeEEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecCCCCcEE
Q 018293          199 THSGFKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLL  276 (358)
Q Consensus       199 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l  276 (358)
                      ...............++++|.++.++++.... +.|..+++...          ....+ ...-...+.++++|+++.+.
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~----------~~~~~~~~~~~~P~gla~d~~~~~lY  179 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV----------DIYSLVTENIQWPNGITLDLLSGRLY  179 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----------CEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC----------CeEEEEECCCCCceEEEEeccCCEEE
Confidence            32221222235678999999666555555443 78888887542          22222 22234568999999875666


Q ss_pred             EEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          277 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       277 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      ++-+..+.|..+|+.......+............+++.. + +++++-...+.|..++..+++.+...
T Consensus       180 ~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          180 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-C-EEEEEECCCCeEEEEeCCCCcceEEE
Confidence            666667889999997655433333222223456777753 3 47887778889999998777765544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.19  E-value=8.4e-08  Score=77.36  Aligned_cols=218  Identities=10%  Similarity=0.020  Sum_probs=130.6

Q ss_pred             cccCCC-ceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           60 KDREKG-NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        60 ~~s~~~-~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      ++++++ .++++-..++.|..++.+......                           ...........+++.++++.++
T Consensus        42 ~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---------------------------~~~~~~~~p~~ia~d~~~~~ly   94 (267)
T 1npe_A           42 AFDCVDKVVYWTDISEPSIGRASLHGGEPTT---------------------------IIRQDLGSPEGIALDHLGRTIF   94 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEESSSCCCEE---------------------------EECTTCCCEEEEEEETTTTEEE
T ss_pred             EEecCCCEEEEEECCCCEEEEEecCCCCcEE---------------------------EEECCCCCccEEEEEecCCeEE
Confidence            347755 455555667899999986432100                           0011224678999998756666


Q ss_pred             EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeC--CCcEEEEEcccCCCccceeeecCCeeeEEE
Q 018293          139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF--DRSVVMKDARISTHSGFKWAVAADVESLAW  216 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  216 (358)
                      ++-...+.|.++++..................++++|+++.++++...  .+.|..+++..................+++
T Consensus        95 v~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~  174 (267)
T 1npe_A           95 WTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTF  174 (267)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEE
T ss_pred             EEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEE
Confidence            666667899999986433222222222456899999976354444433  467888887643321111112245788999


Q ss_pred             cCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce
Q 018293          217 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  296 (358)
Q Consensus       217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  296 (358)
                      +++++.++++-...+.|..+|....         ........ ......++..  ++.++++....+.|.++|..+++. 
T Consensus       175 d~~~~~lyv~d~~~~~I~~~~~~g~---------~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~-  241 (267)
T 1npe_A          175 DAFSSQLCWVDAGTHRAECLNPAQP---------GRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE-  241 (267)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTEE---------EEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE-
T ss_pred             cCCCCEEEEEECCCCEEEEEecCCC---------ceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCc-
Confidence            9976666677777789999998753         22222222 2233566654  335555555678899999988773 


Q ss_pred             eeEecCCCC-ceeEEEEEcCCCC
Q 018293          297 CIASRNPKA-GAVFSVAFSEDSP  318 (358)
Q Consensus       297 ~~~~~~~~~-~~v~~~~~~~~~~  318 (358)
                       +..+.... .....+++.|++.
T Consensus       242 -~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          242 -MDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             -EEEECCSSCCCCCCEEEECSCC
T ss_pred             -eEEEccccccccceeeecCccC
Confidence             33333222 2356677777764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.17  E-value=2.3e-09  Score=89.89  Aligned_cols=257  Identities=9%  Similarity=-0.028  Sum_probs=147.9

Q ss_pred             CcccCCCcEEEEEEecCC-----CceEEEEEEeccCCCCCceEeeceeecCC-cccceeeecCCccccCCCceEEecCC-
Q 018293            1 MTINPNDAVIVCARNEDD-----VSHLEVYILEESDGGDPNLYVHHHIIIPA-FPLCMAWLDCPLKDREKGNFMAVGSM-   73 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~g~~-   73 (358)
                      +.++|+++.+.++....+     ...-.+.++|....+   ..  .+..++. .-....-.|..+.++|||++|+++.. 
T Consensus        70 i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~---vv--~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~  144 (368)
T 1mda_H           70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL---PI--ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG  144 (368)
T ss_dssp             EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC---EE--EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS
T ss_pred             eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC---EE--EEEECCCccccccCCCcceEEEcCCCCEEEEEccC
Confidence            468999999999964100     012378999988752   21  1222220 00000001234456999999998864 


Q ss_pred             -CCeEEE--EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEE
Q 018293           74 -EPAIEI--WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  150 (358)
Q Consensus        74 -dg~i~v--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  150 (358)
                       +..|.+  +|..+   .....+                          +  +   +..+.|++...+++.+.||.+.+.
T Consensus       145 ~~~~v~V~~iD~~t---v~~i~v--------------------------~--~---~~~~~p~g~~~~~~~~~dg~~~~v  190 (368)
T 1mda_H          145 SSAAAGLSVPGASD---DQLTKS--------------------------A--S---CFHIHPGAAATHYLGSCPASLAAS  190 (368)
T ss_dssp             SSCEEEEEETTTEE---EEEEEC--------------------------S--S---CCCCEEEETTEEECCCCTTSCEEE
T ss_pred             CCCeEEEEEEchhh---ceEEEC--------------------------C--C---ceEEccCCCeEEEEEcCCCCEEEE
Confidence             467888  88865   111000                          0  0   122345555666777788888888


Q ss_pred             ECCC-----Cceee----eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-cee-----------eecC
Q 018293          151 DVAA-----GKCNL----TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKW-----------AVAA  209 (358)
Q Consensus       151 d~~~-----~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~-----------~~~~  209 (358)
                      |+++     ++...    .+.-...+.   . .+++ ..++..+. +.+.+.|+....... ...           ....
T Consensus       191 d~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~-~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~  264 (368)
T 1mda_H          191 DLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYP-GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSA  264 (368)
T ss_dssp             ECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTT-TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC
T ss_pred             ECccccccCCeEEEEeeeeeeCCCCcc---c-cccC-CEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccC
Confidence            8876     44331    122122333   3 5555 44555555 999999986532110 000           0112


Q ss_pred             CeeeEEEcCCCCCeEEEEe---c-----CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe-
Q 018293          210 DVESLAWDPHAEHSFVVSL---E-----DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-  280 (358)
Q Consensus       210 ~i~~~~~~~~~~~~~~~~~---~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-  280 (358)
                      ....++++|++..++++..   .     ++.+.++|+.+.         +.+..+.... ....++|+|++..++++.. 
T Consensus       265 g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~---------~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~  334 (368)
T 1mda_H          265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---------QTSGPISNGH-DSDAIIAAQDGASDNYANSA  334 (368)
T ss_dssp             SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---------CEEECCEEEE-EECEEEECCSSSCEEEEEET
T ss_pred             cceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC---------eEEEEEECCC-CcceEEECCCCCEEEEEccC
Confidence            2333789997665444433   1     235669999987         5555554433 5789999999955777777 


Q ss_pred             CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcC
Q 018293          281 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE  315 (358)
Q Consensus       281 ~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  315 (358)
                      .++.|.++|+.+.+  .+..+.... ....+++.+
T Consensus       335 ~~~~VsVID~~t~k--vv~~I~vg~-~P~~i~~~~  366 (368)
T 1mda_H          335 GTEVLDIYDAASDQ--DQSSVELDK-GPESLSVQN  366 (368)
T ss_dssp             TTTEEEEEESSSCE--EEEECCCCS-CCCEEECCC
T ss_pred             CCCeEEEEECCCCc--EEEEEECCC-CCCEEEeec
Confidence            69999999999988  344444332 233455443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.17  E-value=2.9e-09  Score=89.95  Aligned_cols=196  Identities=14%  Similarity=0.106  Sum_probs=127.8

Q ss_pred             ecC--CCCCcEEEEEEcCCeEEEEECCCC----ceeeeec-------ccccceeeEEEcCCCCcEEEEEeCC------Cc
Q 018293          129 AWN--KEFRNILASASADKQVKIWDVAAG----KCNLTLE-------HHTDKVQAVAWNHHSPQILLSGSFD------RS  189 (358)
Q Consensus       129 ~~~--~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d------g~  189 (358)
                      .++  ++...+++.+..++.|.++|+.+.    +...++.       ........+...|++  +++++..+      |.
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~  165 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGG  165 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCe
Confidence            446  775667777888899999999755    5555552       111245667888998  56665555      78


Q ss_pred             EEEEEcccCCCccceeeec---CCeeeEEEcCCCCCeEEEEe-------------------cCCeEEEEEcccCCCCCCC
Q 018293          190 VVMKDARISTHSGFKWAVA---ADVESLAWDPHAEHSFVVSL-------------------EDGTIKGFDIRTAKSDPDS  247 (358)
Q Consensus       190 i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~-------------------~dg~i~i~d~~~~~~~~~~  247 (358)
                      +.++|..+.+.+.......   .....+.|+|++ +.+++..                   .+.+|.+||+.+.      
T Consensus       166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~------  238 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR------  238 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT------
T ss_pred             EEEEECCCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC------
Confidence            9999999887655332111   224458889955 4677663                   3689999999875      


Q ss_pred             CCCCccEEEeec-C-CceeEEEe--cCCCCcEEEEEe------CCCcEEEEecCCCCceeeEe--cCCC-----------
Q 018293          248 TSQQSSFTLHAH-D-KAVCTISY--NPLVPNLLATGS------TDKMVKLWDLSNNQPSCIAS--RNPK-----------  304 (358)
Q Consensus       248 ~~~~~~~~~~~~-~-~~i~~i~~--~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~--~~~~-----------  304 (358)
                         +....+... . .....+.|  +|++ .++++++      .+++|.+|....++......  ....           
T Consensus       239 ---k~~~tI~vg~~g~~P~~i~f~~~Pdg-~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~  314 (462)
T 2ece_A          239 ---KRIHSLTLGEENRMALELRPLHDPTK-LMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILK  314 (462)
T ss_dssp             ---EEEEEEESCTTEEEEEEEEECSSTTC-CEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGG
T ss_pred             ---cEeeEEecCCCCCccceeEeeECCCC-CEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccc
Confidence               444455432 1 23344544  9998 5555544      56788877665543211111  1110           


Q ss_pred             -----CceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          305 -----AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       305 -----~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                           ......|.+++||++++++.-..+.|.+||+..
T Consensus       315 ~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          315 PFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             GGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             ccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence                 134678999999999888888889999999864

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.16  E-value=6.1e-08  Score=82.39  Aligned_cols=226  Identities=12%  Similarity=0.082  Sum_probs=137.9

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      ++..+++++.++.|..+|..+++.........                       .....++    .. + + .++.++.
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-----------------------~~~~~p~----~~-~-~-~v~v~~~  151 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG-----------------------EALSRPV----VS-D-G-LVLIHTS  151 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSS-----------------------CCCSCCE----EE-T-T-EEEEECT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC-----------------------ceEcCCE----EE-C-C-EEEEEcC
Confidence            45677788889999999998766543221100                       0011111    11 2 3 6778889


Q ss_pred             CCeEEEEECCCCceeeeecccccce-----eeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecC-------C-
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHTDKV-----QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA-------D-  210 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~-  210 (358)
                      ++.|..+|.++++.+..........     ......  + ..++.+..++.+..+|..+++..........       . 
T Consensus       152 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~  228 (376)
T 3q7m_A          152 NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL  228 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC----------
T ss_pred             CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence            9999999999999887765432211     122222  2 4577788899999999988765432211100       0 


Q ss_pred             --e-eeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEE
Q 018293          211 --V-ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL  287 (358)
Q Consensus       211 --i-~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i  287 (358)
                        + ......   +..+++++.++.+..+|.+++         +.......  .....+...  + ..++.++.++.+..
T Consensus       229 ~~~~~~p~~~---~~~v~~~~~~g~l~~~d~~tG---------~~~w~~~~--~~~~~~~~~--~-~~l~~~~~~g~l~~  291 (376)
T 3q7m_A          229 SDVDTTPVVV---NGVVFALAYNGNLTALDLRSG---------QIMWKREL--GSVNDFIVD--G-NRIYLVDQNDRVMA  291 (376)
T ss_dssp             -CCCCCCEEE---TTEEEEECTTSCEEEEETTTC---------CEEEEECC--CCEEEEEEE--T-TEEEEEETTCCEEE
T ss_pred             cccCCCcEEE---CCEEEEEecCcEEEEEECCCC---------cEEeeccC--CCCCCceEE--C-CEEEEEcCCCeEEE
Confidence              1 111111   246788888999999999887         44444332  223444443  3 57788888999999


Q ss_pred             EecCCCCceeeEecC-CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          288 WDLSNNQPSCIASRN-PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       288 ~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      +|..+++.  ..... .....+......  +. .++.++.+|.|.++|..+++.+.+.
T Consensus       292 ~d~~tG~~--~w~~~~~~~~~~~~~~~~--~~-~l~v~~~~g~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          292 LTIDGGVT--LWTQSDLLHRLLTSPVLY--NG-NLVVGDSEGYLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             EETTTCCE--EEEECTTTTSCCCCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EECCCCcE--EEeecccCCCcccCCEEE--CC-EEEEEeCCCeEEEEECCCCcEEEEE
Confidence            99999884  33332 111222222222  33 3667888999999999999876543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.14  E-value=2.6e-08  Score=91.32  Aligned_cols=185  Identities=12%  Similarity=0.123  Sum_probs=115.5

Q ss_pred             EEEecCCCCCcEEEEEEcCCe-------------------EEEEECCCCceeeeecc--cc-------cceeeEEEcCCC
Q 018293          126 LGLAWNKEFRNILASASADKQ-------------------VKIWDVAAGKCNLTLEH--HT-------DKVQAVAWNHHS  177 (358)
Q Consensus       126 ~~~~~~~~~~~~l~s~~~dg~-------------------v~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~  177 (358)
                      ..++++|+ ..+++.+..++.                   |..+|.++|+.+..++.  |.       .++.......++
T Consensus       238 ~~~~~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G  316 (689)
T 1yiq_A          238 DSFAYDPE-LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDG  316 (689)
T ss_dssp             SCEEEETT-TTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             cceeEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCC
Confidence            35678887 457888877763                   99999999999887754  21       111112222244


Q ss_pred             C--cEEEEEeCCCcEEEEEcccCCCcccee------ee--------------------c-------------CCeeeEEE
Q 018293          178 P--QILLSGSFDRSVVMKDARISTHSGFKW------AV--------------------A-------------ADVESLAW  216 (358)
Q Consensus       178 ~--~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~--------------------~-------------~~i~~~~~  216 (358)
                      .  ..++.++.+|.++++|.++++.+....      ..                    .             ..-..+++
T Consensus       317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~  396 (689)
T 1yiq_A          317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY  396 (689)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred             cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence            1  278889999999999999887642110      00                    0             00113678


Q ss_pred             cCCCCCeEEEEec---------------------------------------------CCeEEEEEcccCCCCCCCCCCC
Q 018293          217 DPHAEHSFVVSLE---------------------------------------------DGTIKGFDIRTAKSDPDSTSQQ  251 (358)
Q Consensus       217 ~~~~~~~~~~~~~---------------------------------------------dg~i~i~d~~~~~~~~~~~~~~  251 (358)
                      +|+.+ ++++...                                             +|.|..||+.++         +
T Consensus       397 dp~~~-~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG---------~  466 (689)
T 1yiq_A          397 NPDTG-LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ---------Q  466 (689)
T ss_dssp             ETTTT-EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT---------E
T ss_pred             CCCCC-EEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC---------C
Confidence            88544 5555422                                             377999999887         5


Q ss_pred             ccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEE
Q 018293          252 SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG  324 (358)
Q Consensus       252 ~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  324 (358)
                      .+.....+.. ...-.+...+ .+++.|+.||.++.||.++++.+-..... +...-.-+.|..+|+..+++.
T Consensus       467 ~~W~~~~~~~-~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~lw~~~~~-~~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          467 AAWEVPYVTI-FNGGTLSTAG-NLVFEGSADGRVIAYAADTGEKLWEQPAA-SGVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             EEEEEEESSS-CCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSCCEEEEETTEEEEEEE
T ss_pred             eEeEccCCCC-ccCccceECC-CEEEEECCCCcEEEEECCCCccceeeeCC-CCcccCceEEEECCEEEEEEE
Confidence            5666655432 3333445555 68899999999999999999853333322 211123366778887544443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.14  E-value=8.6e-08  Score=81.59  Aligned_cols=210  Identities=5%  Similarity=0.041  Sum_probs=136.7

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  202 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  202 (358)
                      ..+..++|.+.++.++++-...+.|..+++........+.........+++.+.+..++++-...+.|.+.++.......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            45789999987566666666778999999876654333333334567889988664666666667888888876543322


Q ss_pred             ceeeecCCeeeEEEcCCCCCeEEEEecC-CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC
Q 018293          203 FKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  281 (358)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~  281 (358)
                      ...........++++|.++.++++-... +.|..+++...         .........-...+.|+++|+++.+.++-+.
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~---------~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~  266 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS---------GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK  266 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------SCEEEECSSCSCEEEEEEEGGGTEEEEEETT
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC---------CcEEEEECCCCCeeeEEEeCCCCEEEEEECC
Confidence            2222235678999999776566665555 78888887643         2222222223446899999877566666666


Q ss_pred             CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          282 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       282 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      .+.|..+|+.......+  ..........+++. .+ .++++-...+.|..++..+++.+....
T Consensus       267 ~~~I~~~d~dG~~~~~~--~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          267 HHVIERANLDGSHRKAV--ISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TTEEEEECTTSCSCEEE--ECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCEEEEEeCCCCeeEEE--EECCCCCceEEEEE-CC-EEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            78899999876543222  22223446678883 33 378877788899999976776655443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.13  E-value=6.4e-08  Score=80.41  Aligned_cols=255  Identities=9%  Similarity=-0.031  Sum_probs=140.8

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      +++++|+++.++..++.|..|+..+.... ........... .   ......   ..........+..+++.++++. |+
T Consensus        25 ~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~-~---~~~g~~---~~~~~~~~~~p~gi~~~~~~g~-l~   95 (322)
T 2fp8_A           25 TFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNK-A---FCENST---DAEKRPLCGRTYDISYNLQNNQ-LY   95 (322)
T ss_dssp             ECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCH-H---HHTTCC---CGGGHHHHCCEEEEEEETTTTE-EE
T ss_pred             EEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccc-c---cccccc---chhccccCCCCceEEEcCCCCc-EE
Confidence            34788988888888999999987643211 10000000000 0   000000   0000011235788999973254 55


Q ss_pred             EEEcCCeEEEEECCCCceeeeec----c-cccceeeEEEcC-CCCcEEEEEeC-----------------CCcEEEEEcc
Q 018293          140 SASADKQVKIWDVAAGKCNLTLE----H-HTDKVQAVAWNH-HSPQILLSGSF-----------------DRSVVMKDAR  196 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~----~-~~~~v~~~~~~~-~~~~~l~~~~~-----------------dg~i~i~d~~  196 (358)
                      .+...+.+..+|..+++. ..+.    + .......+++.+ +| ++.++...                 ++.|..+|..
T Consensus        96 v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             EEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             EEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence            555556688888776542 2221    1 113467899999 88 66655432                 3678888876


Q ss_pred             cCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEE
Q 018293          197 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  276 (358)
Q Consensus       197 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l  276 (358)
                      +++... ..........++++|++..++++-...+.|..|++.....       .....+....+ ...+++.++| ++.
T Consensus       174 ~~~~~~-~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-------~~~~~~~~~~g-P~gi~~d~~G-~l~  243 (322)
T 2fp8_A          174 TKETTL-LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-------GTAEVLVKIPN-PGNIKRNADG-HFW  243 (322)
T ss_dssp             TTEEEE-EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-------TCEEEEEECSS-EEEEEECTTS-CEE
T ss_pred             CCEEEE-eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-------CccceEEeCCC-CCCeEECCCC-CEE
Confidence            554322 2222345678999996554555556678999999875321       11111111223 6789999988 665


Q ss_pred             EEEeC----------CCcEEEEecCCCCceeeEecCC-C-CceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          277 ATGST----------DKMVKLWDLSNNQPSCIASRNP-K-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       277 ~~~~~----------dg~i~i~d~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      ++...          .+.|..+|.. ++......... . ...+..+++ .+++ ++++...++.|..+++...
T Consensus       244 va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          244 VSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSSCSEEEEEEC---
T ss_pred             EEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCE-EEEeecCCCceEEEecccc
Confidence            55443          4668888874 44322222221 1 234566666 3555 6777777889999998643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.11  E-value=2.8e-07  Score=77.24  Aligned_cols=208  Identities=5%  Similarity=0.052  Sum_probs=135.9

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  202 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  202 (358)
                      ..+..++|++.++.++++-...+.|..+++........+.........+++.+.++.++++-...+.|.+.++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            44789999987565666666778999999876654333332334567889988664666666677889999987544322


Q ss_pred             ceeeecCCeeeEEEcCCCCCeEEEEecC-CeEEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecCCCCcEEEEEe
Q 018293          203 FKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~  280 (358)
                      ...........++++|.++.++++-... +.|..+++...          ....+ ...-...+.++++|+++.+.++-.
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~----------~~~~~~~~~~~~PnGla~d~~~~~lY~aD~  222 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS----------GRRIIADTHLFWPNGLTIDYAGRRMYWVDA  222 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----------SCEESCCSSCSCEEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC----------CcEEEEECCCCCcceEEEeCCCCEEEEEEC
Confidence            2222235578999999766666665555 78888887643          11121 122344689999987756666666


Q ss_pred             CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          281 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       281 ~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      ..+.|..+|+.......+.  .........+++. .+ .++++-...+.|..++..+++.+...
T Consensus       223 ~~~~I~~~~~dG~~~~~~~--~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          223 KHHVIERANLDGSHRKAVI--SQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             TTTEEEEEETTSCSCEEEE--CSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCEEEEEeCCCCceEEEE--eCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCCccEEe
Confidence            6788999998765432222  2223446677773 34 37777778889999987677655443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.10  E-value=5.7e-08  Score=82.58  Aligned_cols=223  Identities=7%  Similarity=0.033  Sum_probs=130.7

Q ss_pred             CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293           65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  144 (358)
Q Consensus        65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  144 (358)
                      +..+++++.++.|..+|..+++.........                  ..........++    .. + + .++.+..+
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~------------------~~~~~~~~~~~~----~~-~-~-~v~~g~~~  197 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDM------------------PSLSLRGESAPT----TA-F-G-AAVVGGDN  197 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----------------------CCCCCCE----EE-T-T-EEEECCTT
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCC------------------CceeecCCCCcE----EE-C-C-EEEEEcCC
Confidence            4577788889999999998766544321100                  000000111111    11 2 3 67778889


Q ss_pred             CeEEEEECCCCceeeeecccccc----ee---eEEEcC--CCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEE
Q 018293          145 KQVKIWDVAAGKCNLTLEHHTDK----VQ---AVAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA  215 (358)
Q Consensus       145 g~v~iwd~~~~~~~~~~~~~~~~----v~---~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  215 (358)
                      +.+..+|.++++.+.........    +.   .+.-.|  .+ ..++.++.++.+..+|.++++..... . ......+.
T Consensus       198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~v~~~~~~g~l~~~d~~tG~~~w~~-~-~~~~~~~~  274 (376)
T 3q7m_A          198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN-GVVFALAYNGNLTALDLRSGQIMWKR-E-LGSVNDFI  274 (376)
T ss_dssp             TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET-TEEEEECTTSCEEEEETTTCCEEEEE-C-CCCEEEEE
T ss_pred             CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC-CEEEEEecCcEEEEEECCCCcEEeec-c-CCCCCCce
Confidence            99999999999887766422110    00   000111  12 46777888999999999887654311 1 12233444


Q ss_pred             EcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee-cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293          216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       216 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~  294 (358)
                      ..   +..+++++.++.+..+|..++         +....... ....+......  + ..|+.++.+|.+.++|..+++
T Consensus       275 ~~---~~~l~~~~~~g~l~~~d~~tG---------~~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          275 VD---GNRIYLVDQNDRVMALTIDGG---------VTLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWINVEDGR  339 (376)
T ss_dssp             EE---TTEEEEEETTCCEEEEETTTC---------CEEEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEEETTTCC
T ss_pred             EE---CCEEEEEcCCCeEEEEECCCC---------cEEEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEEECCCCc
Confidence            43   347888888999999999887         44444431 12222333333  3 578888999999999999998


Q ss_pred             ceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEE
Q 018293          295 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  334 (358)
Q Consensus       295 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~  334 (358)
                      ........  ...+.......++.  |+.++.+|.|+.|+
T Consensus       340 ~~~~~~~~--~~~~~~~~~~~~~~--l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          340 FVAQQKVD--SSGFQTEPVAADGK--LLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEEEECC--TTCBCSCCEEETTE--EEEEBTTSCEEEEE
T ss_pred             EEEEEecC--CCcceeCCEEECCE--EEEEeCCCEEEEEe
Confidence            54333331  12222111112443  56688899999887

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.10  E-value=3.6e-08  Score=90.15  Aligned_cols=199  Identities=9%  Similarity=0.120  Sum_probs=125.6

Q ss_pred             EEEecCCCCCcEEEEEEcCC-------------------eEEEEECCCCceeeeecc--cc-------cceeeEEEcCCC
Q 018293          126 LGLAWNKEFRNILASASADK-------------------QVKIWDVAAGKCNLTLEH--HT-------DKVQAVAWNHHS  177 (358)
Q Consensus       126 ~~~~~~~~~~~~l~s~~~dg-------------------~v~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~  177 (358)
                      ..++++|+ ..+++.+..++                   .|..+|.++|+.+..++.  |.       .....+....+|
T Consensus       246 ~~~~~d~~-~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG  324 (677)
T 1kb0_A          246 DSMTFDAE-LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG  324 (677)
T ss_dssp             SCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred             cceeEcCC-CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence            35677888 45777776554                   599999999998877653  21       112222333344


Q ss_pred             C--cEEEEEeCCCcEEEEEcccCCCccceeeec-----------CCe------------------------eeEEEcCCC
Q 018293          178 P--QILLSGSFDRSVVMKDARISTHSGFKWAVA-----------ADV------------------------ESLAWDPHA  220 (358)
Q Consensus       178 ~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~~i------------------------~~~~~~~~~  220 (358)
                      .  ..++.++.+|.++++|.++++.+.......           .++                        ..++++|+.
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~  404 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT  404 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred             cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence            2  468889999999999999887643211000           000                        156788855


Q ss_pred             CCeEEEEec-------------------------------------------CCeEEEEEcccCCCCCCCCCCCccEEEe
Q 018293          221 EHSFVVSLE-------------------------------------------DGTIKGFDIRTAKSDPDSTSQQSSFTLH  257 (358)
Q Consensus       221 ~~~~~~~~~-------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~  257 (358)
                      + ++++...                                           .|.|..||+.++         +.+....
T Consensus       405 ~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG---------~~~W~~~  474 (677)
T 1kb0_A          405 G-LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ---------KAAWSVE  474 (677)
T ss_dssp             T-EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT---------EEEEEEE
T ss_pred             C-EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC---------cEEeecC
Confidence            4 6665433                                           277999999887         5555554


Q ss_pred             ecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEcc-----------
Q 018293          258 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS-----------  326 (358)
Q Consensus       258 ~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------  326 (358)
                      . ..++....+...+ .+++.++.||.+++||.++++.+...... +...-.-+.+..+|+..++..+.           
T Consensus       475 ~-~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~~lw~~~~~-~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~  551 (677)
T 1kb0_A          475 H-VSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEKLWEAPTG-TGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARA  551 (677)
T ss_dssp             E-SSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCS
T ss_pred             C-CCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCceeeeeeCC-CCcccCCEEEEeCCEEEEEEeccCCccccccccc
Confidence            3 3344445556666 68888899999999999999854333322 22222335667888744444322           


Q ss_pred             -----CCeEEEEEccCC
Q 018293          327 -----KGKLEIWDTLSD  338 (358)
Q Consensus       327 -----dg~i~vw~~~~~  338 (358)
                           .+.+.+|.+...
T Consensus       552 ~~~~~~~~l~~f~l~~~  568 (677)
T 1kb0_A          552 TERQGPGTVYTFVVGGK  568 (677)
T ss_dssp             CSCCCCCEEEEEEETCB
T ss_pred             cccCCCCeEEEEecccc
Confidence                 468888988743

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.09  E-value=1.6e-08  Score=80.32  Aligned_cols=191  Identities=9%  Similarity=-0.025  Sum_probs=126.5

Q ss_pred             ccCCCceEEecCC--CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           61 DREKGNFMAVGSM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        61 ~s~~~~~l~~g~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      |++++.++++.+.  ++.|+++|..+++......+.                         .+. ....+++.  ++.+.
T Consensus        28 ~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~-------------------------~~~-fgeGi~~~--g~~ly   79 (266)
T 2iwa_A           28 YAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD-------------------------DSY-FGEGLTLL--NEKLY   79 (266)
T ss_dssp             ECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC-------------------------TTC-CEEEEEEE--TTEEE
T ss_pred             EeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC-------------------------CCc-ceEEEEEe--CCEEE
Confidence            3787765555443  589999999887655433221                         111 11234444  34566


Q ss_pred             EEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeec-----CCeee
Q 018293          139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-----ADVES  213 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~  213 (358)
                      ++.-.++.+.++|..+.+.+.++.....  ....+++++ ..++++..++.|.++|..+.+......-..     ..++.
T Consensus        80 v~t~~~~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg-~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne  156 (266)
T 2iwa_A           80 QVVWLKNIGFIYDRRTLSNIKNFTHQMK--DGWGLATDG-KILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE  156 (266)
T ss_dssp             EEETTCSEEEEEETTTTEEEEEEECCSS--SCCEEEECS-SSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             EEEecCCEEEEEECCCCcEEEEEECCCC--CeEEEEECC-CEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence            6666789999999999999888863311  223455677 445555678999999998876554332111     23567


Q ss_pred             EEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec-------------CCceeEEEecCCCCcEEEEEe
Q 018293          214 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-------------DKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       214 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-------------~~~i~~i~~~~~~~~~l~~~~  280 (358)
                      +.|. + +.+++....++.|.+.|..++         +.+..+...             ....+.|+++|++..+++++.
T Consensus       157 le~~-d-g~lyvn~~~~~~V~vID~~tg---------~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk  225 (266)
T 2iwa_A          157 LEYI-N-GEVWANIWQTDCIARISAKDG---------TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK  225 (266)
T ss_dssp             EEEE-T-TEEEEEETTSSEEEEEETTTC---------CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEE-C-CEEEEecCCCCeEEEEECCCC---------cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence            7777 3 335555556889999999987         555555431             124589999999877888888


Q ss_pred             CCCcEEEEecCCC
Q 018293          281 TDKMVKLWDLSNN  293 (358)
Q Consensus       281 ~dg~i~i~d~~~~  293 (358)
                      ..+.+.+.++...
T Consensus       226 ~~~~v~~i~l~~~  238 (266)
T 2iwa_A          226 LWPKLFEIKLHLV  238 (266)
T ss_dssp             TCSEEEEEEEEEC
T ss_pred             CCCeEEEEEEecc
Confidence            8899999888654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.09  E-value=1e-08  Score=89.78  Aligned_cols=254  Identities=11%  Similarity=0.104  Sum_probs=155.5

Q ss_pred             EEecCCCCeEEEEEcccccCcCceeecCCcccc-------cccccccCC--------ceec--cccccCCCcccEEEEec
Q 018293           68 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE-------KKKKKSKKG--------KKSS--IKYKKGSHTDSVLGLAW  130 (358)
Q Consensus        68 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~--------~~~~--~~~~~~~h~~~v~~~~~  130 (358)
                      +.+|+..|.++|+-+.+++.+..+.++...+..       .+.......        +...  ....-..|-   -.+++
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh---~~~s~   94 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHH---VHMSF   94 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCC---EEEEE
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCc---cccCC
Confidence            678999999999999999888776665433221       111110000        0000  010111121   23333


Q ss_pred             ---CCCCCcEEEEEEcCCeEEEEECCCCceeeeecc-cccceeeEEE-c-CCCCcEEEEEe------------------C
Q 018293          131 ---NKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HTDKVQAVAW-N-HHSPQILLSGS------------------F  186 (358)
Q Consensus       131 ---~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~~l~~~~------------------~  186 (358)
                         .++|+.++++...++.|.+.|+.+.++...+.- ....+..+++ . |++ .++++++                  .
T Consensus        95 t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~  173 (595)
T 1fwx_A           95 TEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANY  173 (595)
T ss_dssp             ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred             CCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCccccccccc
Confidence               346454555555567899999999998774431 2345778887 4 888 6666663                  3


Q ss_pred             CCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCC-----------------------------------
Q 018293          187 DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG-----------------------------------  231 (358)
Q Consensus       187 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg-----------------------------------  231 (358)
                      ++.+.+.|..+.+... ..........++++|++. ++++.+.+.                                   
T Consensus       174 ~~~vtvID~~t~~v~~-qI~Vgg~pd~~~~spdGk-~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~  251 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAW-QVLVSGNLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  251 (595)
T ss_dssp             EEEEEEEETTTTEEEE-EEEESSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             CceEEEEECCCCeEEE-EEEeCCCccceEECCCCC-EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence            4578899988765443 222333567788999655 555554332                                   


Q ss_pred             ---eEEEEEcccCCCCCCCCCCCc-cEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc----------ee
Q 018293          232 ---TIKGFDIRTAKSDPDSTSQQS-SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----------SC  297 (358)
Q Consensus       232 ---~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~  297 (358)
                         .|.+.|.++.+       ... +..+... ....++.++|||..+++++..+.+|.++|+.+.+.          ..
T Consensus       252 ~i~~V~VID~~~~~-------~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v  323 (595)
T 1fwx_A          252 ELNGVKVVDGRKEA-------SSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV  323 (595)
T ss_dssp             EETTEEEEECSGGG-------CCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred             EECcEEEEeCcccC-------CceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence               25555555410       022 3333332 34578999999955566666789999999986421          11


Q ss_pred             eEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          298 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       298 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ..... -......++|+|+| +++++.-.|+.|.+||+.+
T Consensus       324 ~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          324 VAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             EEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence            22222 23457789999999 6888999999999999987

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.09  E-value=8e-09  Score=86.08  Aligned_cols=188  Identities=12%  Similarity=0.061  Sum_probs=120.9

Q ss_pred             cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc
Q 018293          124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  203 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  203 (358)
                      .+.++...++ + .+..++.++.+..+|.+ ++....+......+.++...+++ . +..++  +.+..+| .+++....
T Consensus       138 ~~~~~~~~~~-g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g-~-l~v~t--~~l~~~d-~~g~~~~~  209 (330)
T 3hxj_A          138 IYATPIVSED-G-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG-T-IYFGS--DKVYAIN-PDGTEKWN  209 (330)
T ss_dssp             CCSCCEECTT-S-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-C-EEEES--SSEEEEC-TTSCEEEE
T ss_pred             eeeeeEEcCC-C-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-E-EEEEe--CEEEEEC-CCCcEEEE
Confidence            3455566656 4 36667788999999988 87776666555667777877776 4 44455  8899999 55443322


Q ss_pred             eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC
Q 018293          204 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  283 (358)
Q Consensus       204 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg  283 (358)
                      .......+.++...+++  .+.+++.++.+..+|.. +         .....+......+.++.+.+++  .|..++.+|
T Consensus       210 ~~~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~~-g---------~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~g  275 (330)
T 3hxj_A          210 FYAGYWTVTRPAISEDG--TIYVTSLDGHLYAINPD-G---------TEKWRFKTGKRIESSPVIGNTD--TIYFGSYDG  275 (330)
T ss_dssp             ECCSSCCCSCCEECTTS--CEEEEETTTEEEEECTT-S---------CEEEEEECSSCCCSCCEECTTS--CEEEECTTC
T ss_pred             EccCCcceeceEECCCC--eEEEEcCCCeEEEECCC-C---------CEeEEeeCCCCccccceEcCCC--eEEEecCCC
Confidence            22233557778887743  57777788888888743 3         3344444444444455565544  567788888


Q ss_pred             cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          284 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       284 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      .|..+|. +++.  ..........+.++...++|.  |..++.+|.+++......
T Consensus       276 gl~~~d~-~g~~--~~~~~~~~~~~~~~~~d~~g~--l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          276 HLYAINP-DGTE--KWNFETGSWIIATPVIDENGT--IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             EEEEECT-TSCE--EEEEECSSCCCSCCEECTTCC--EEEECTTSCEEEEEC---
T ss_pred             CEEEECC-CCcE--EEEEEcCCccccceEEcCCCE--EEEEcCCCeEEEEecccc
Confidence            8999996 5553  223333344566777778887  445889999998876543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.07  E-value=4.7e-07  Score=77.37  Aligned_cols=214  Identities=12%  Similarity=0.052  Sum_probs=136.1

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC----ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  196 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  196 (358)
                      ....+..++|++.++.++++-...+.|..+++...    .....+.........+++.+.+.+++++-...+.|.+.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            34568899999875656666566788999998652    22233332345677899988554666666678889999887


Q ss_pred             cCCCccceeeecCCeeeEEEcCCCCCeEEEEec-CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcE
Q 018293          197 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  275 (358)
Q Consensus       197 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  275 (358)
                      .................++++|.++.++++-.. .+.|...++...         .........-...+.|+++++++.+
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~---------~~~~~~~~~l~~P~glavd~~~~~l  260 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------DIYSLVTENIQWPNGITLDLLSGRL  260 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC---------SCEEEECSSCSCEEEEEEETTTTEE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC---------ccEEEEECCCCceEEEEEEeCCCEE
Confidence            554333222233457899999966655555423 477888888643         2222222233567899999877555


Q ss_pred             EEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          276 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       276 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      .++-...+.|..+|+.......+............+++..  ..++.+-...+.|..+|..+++.+....
T Consensus       261 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~--~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          261 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEET--TEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeC--CEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            5665667889999997765434433222233455677733  3477777778899999987777655443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.05  E-value=7.3e-08  Score=75.58  Aligned_cols=186  Identities=10%  Similarity=0.037  Sum_probs=122.9

Q ss_pred             EEEEecCCCCCcEEEEEEcCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc
Q 018293          125 VLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  202 (358)
Q Consensus       125 v~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  202 (358)
                      ...+.|+ + +.++.+.+.+|  .|+++|+++++.+..+... .........++++.+.+..-.++.+.++|..+.+...
T Consensus        45 tqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           45 TEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             cceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence            4788888 5 56777777776  8999999999998887643 3333322333443566666678999999999887765


Q ss_pred             ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec--C---CceeEEEecCCCCcEEE
Q 018293          203 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--D---KAVCTISYNPLVPNLLA  277 (358)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~---~~i~~i~~~~~~~~~l~  277 (358)
                      ... ....-..++  +++. .++.+..++.|.++|..+.         +....+...  .   ..++.+.|. +| .+.+
T Consensus       122 ti~-~~~eG~glt--~dg~-~L~~SdGs~~i~~iDp~T~---------~v~~~I~V~~~g~~~~~lNELe~~-~G-~lya  186 (262)
T 3nol_A          122 SFN-YDGEGWGLT--HNDQ-YLIMSDGTPVLRFLDPESL---------TPVRTITVTAHGEELPELNELEWV-DG-EIFA  186 (262)
T ss_dssp             EEE-CSSCCCCEE--ECSS-CEEECCSSSEEEEECTTTC---------SEEEEEECEETTEECCCEEEEEEE-TT-EEEE
T ss_pred             EEE-CCCCceEEe--cCCC-EEEEECCCCeEEEEcCCCC---------eEEEEEEeccCCccccccceeEEE-CC-EEEE
Confidence            332 223333444  4444 4555555788999999886         444444332  2   334567776 45 5555


Q ss_pred             EEeCCCcEEEEecCCCCceeeEecCCC----------CceeEEEEEcCCCCeEEEEEccCC
Q 018293          278 TGSTDKMVKLWDLSNNQPSCIASRNPK----------AGAVFSVAFSEDSPFVLAIGGSKG  328 (358)
Q Consensus       278 ~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~~~~~dg  328 (358)
                      ..-.++.|.+.|..+++......+.+-          ....+.|+|+|+++.++++|-.=-
T Consensus       187 n~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp  247 (262)
T 3nol_A          187 NVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP  247 (262)
T ss_dssp             EETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS
T ss_pred             EEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC
Confidence            544688899999999986555554321          235689999999887888775443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.04  E-value=1.7e-08  Score=92.28  Aligned_cols=243  Identities=10%  Similarity=0.078  Sum_probs=140.8

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      .+..+++++.|+.|..+|..+++..........                  .........++.    . + + .++.+..
T Consensus       116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~------------------~~~~~~~~~P~v----~-~-~-~v~vg~~  170 (668)
T 1kv9_A          116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDP------------------AKPYSITGAPRV----V-K-G-KVIIGNG  170 (668)
T ss_dssp             EBTEEEEECTTSEEEEEETTTCCEEEEEECSCT------------------TSSCBCCSCCEE----E-T-T-EEEECCB
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCC------------------CCcceecCCCEE----E-C-C-EEEEeCC
Confidence            356788888899999999988776543221100                  000000011111    1 2 3 4444433


Q ss_pred             ------CCeEEEEECCCCceeeeecccc-------------------------------cceeeEEEcCCCCcEEEEEeC
Q 018293          144 ------DKQVKIWDVAAGKCNLTLEHHT-------------------------------DKVQAVAWNHHSPQILLSGSF  186 (358)
Q Consensus       144 ------dg~v~iwd~~~~~~~~~~~~~~-------------------------------~~v~~~~~~~~~~~~l~~~~~  186 (358)
                            +|.|..+|.++|+.+.++....                               .....+++.++. ..++.+..
T Consensus       171 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~  249 (668)
T 1kv9_A          171 GAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTG  249 (668)
T ss_dssp             CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECC
T ss_pred             CCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCC
Confidence                  5899999999999887764210                               011246777777 67777776


Q ss_pred             CC-------------------cEEEEEcccCCCccceeee--c-------CCeeeEEEcCCCC--CeEEEEecCCeEEEE
Q 018293          187 DR-------------------SVVMKDARISTHSGFKWAV--A-------ADVESLAWDPHAE--HSFVVSLEDGTIKGF  236 (358)
Q Consensus       187 dg-------------------~i~i~d~~~~~~~~~~~~~--~-------~~i~~~~~~~~~~--~~~~~~~~dg~i~i~  236 (358)
                      ++                   .|..+|.++++..-.....  .       .+.....+..++.  ..++.++.+|.++++
T Consensus       250 ~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~l  329 (668)
T 1kv9_A          250 NGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVL  329 (668)
T ss_dssp             CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred             CCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEE
Confidence            65                   3899999888765432221  1       2222222222222  258888999999999


Q ss_pred             EcccCCCCCCCCCCCccEEEeecC------------C------------------------ceeEEEecCCCCcEEEEE-
Q 018293          237 DIRTAKSDPDSTSQQSSFTLHAHD------------K------------------------AVCTISYNPLVPNLLATG-  279 (358)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~------------~------------------------~i~~i~~~~~~~~~l~~~-  279 (358)
                      |..+++.         +.......            .                        .-..++++|+. .+++.. 
T Consensus       330 D~~tG~~---------l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~-g~~yv~~  399 (668)
T 1kv9_A          330 DRTNGKL---------ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT-GLVYIPY  399 (668)
T ss_dssp             ETTTCCE---------EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEE
T ss_pred             ECCCCCE---------eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC-CEEEEec
Confidence            9988843         21111000            0                        01125677765 344431 


Q ss_pred             -----------------------------------eCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEE
Q 018293          280 -----------------------------------STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG  324 (358)
Q Consensus       280 -----------------------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  324 (358)
                                                         ..+|.|..||+.+++..  ...... .+.....+...+. +++.+
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~--W~~~~~-~~~~~~~~~t~gg-~vf~g  475 (668)
T 1kv9_A          400 QEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAA--WKVPYP-THWNGGTLSTAGN-LVFQG  475 (668)
T ss_dssp             EECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEE--EEEEES-SSCCCCEEEETTT-EEEEE
T ss_pred             cccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEE--EEccCC-CCCcCceeEeCCC-EEEEE
Confidence                                               12478999999998843  222211 2222233444555 57778


Q ss_pred             ccCCeEEEEEccCCCccccccc
Q 018293          325 GSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       325 ~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                      +.||.++.||..+++.+.+.-.
T Consensus       476 ~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          476 TAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             CTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCcccchhhhhhcChhheEecC
Confidence            9999999999999998866543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.00  E-value=7.6e-08  Score=75.46  Aligned_cols=183  Identities=8%  Similarity=-0.012  Sum_probs=123.9

Q ss_pred             EEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceee--EEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc
Q 018293          125 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQA--VAWNHHSPQILLSGSFDRSVVMKDARISTHSG  202 (358)
Q Consensus       125 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  202 (358)
                      ...+.|+.  +.++.+.+.+|.|+++|+++++.+..+ - ......  +++  ++..+.+..-.++.+.+||..+.+...
T Consensus        57 tqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           57 TQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             EEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             cceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEEE
Confidence            46788873  568888888999999999999988877 2 233333  454  444666667789999999999887665


Q ss_pred             ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee--cC---CceeEEEecCCCCcEEE
Q 018293          203 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HD---KAVCTISYNPLVPNLLA  277 (358)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~---~~i~~i~~~~~~~~~l~  277 (358)
                      ... ....-..+++  ++. .++.+..++.|.++|..+.         +....+..  +.   ..++.+.|. +| .+.+
T Consensus       131 ti~-~~~eGwGLt~--Dg~-~L~vSdGs~~l~~iDp~T~---------~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lya  195 (268)
T 3nok_A          131 TTR-YSGEGWGLCY--WNG-KLVRSDGGTMLTFHEPDGF---------ALVGAVQVKLRGQPVELINELECA-NG-VIYA  195 (268)
T ss_dssp             EEE-CSSCCCCEEE--ETT-EEEEECSSSEEEEECTTTC---------CEEEEEECEETTEECCCEEEEEEE-TT-EEEE
T ss_pred             EEe-CCCceeEEec--CCC-EEEEECCCCEEEEEcCCCC---------eEEEEEEeCCCCcccccccccEEe-CC-EEEE
Confidence            333 2333345554  344 6666667899999999886         44444432  22   234667777 45 5555


Q ss_pred             EEeCCCcEEEEecCCCCceeeEecC-----------CCCceeEEEEEcCCCCeEEEEEccCC
Q 018293          278 TGSTDKMVKLWDLSNNQPSCIASRN-----------PKAGAVFSVAFSEDSPFVLAIGGSKG  328 (358)
Q Consensus       278 ~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~l~~~~~dg  328 (358)
                      ..-.+..|.+.|..+++......+.           ......+.|+++|+++.++++|-.=-
T Consensus       196 nvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp  257 (268)
T 3nok_A          196 NIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP  257 (268)
T ss_dssp             EETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS
T ss_pred             EECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC
Confidence            4446788999999999854444432           11246789999998877888875433

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.97  E-value=2.5e-06  Score=67.35  Aligned_cols=207  Identities=11%  Similarity=0.147  Sum_probs=135.8

Q ss_pred             ccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecc-cccceeeEEEcCCCCcEEEEEeCCCcEEEEEc
Q 018293          117 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA  195 (358)
Q Consensus       117 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  195 (358)
                      .+.+-...+..++|+|+++.++++...++.|...|.. ++.++.+.- .......+++.+++ .++++.-.++.+.++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEc
Confidence            3445567899999999866677778888999999987 887777642 12457788998887 66676667788988887


Q ss_pred             ccCCCccc--e-------eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe-------ec
Q 018293          196 RISTHSGF--K-------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-------AH  259 (358)
Q Consensus       196 ~~~~~~~~--~-------~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~  259 (358)
                      ........  .       .........++|+|.++ .++++.+.....+|.+... ..     ...+..+.       .+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~-~L~va~E~~p~~i~~~~g~-~~-----~~~l~i~~~~~~~~~~~  171 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH-TFWFFKEKNPIEVYKVNGL-LS-----SNELHISKDKALQRQFT  171 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT-EEEEEEESSSEEEEEEEST-TC-----SSCCEEEECHHHHHTCC
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCC-EEEEEECcCCceEEEEccc-cc-----CCceeeecchhhccccc
Confidence            65543110  1       11234468999999655 5555555555556665521 00     01111111       12


Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCC-------CceeEEEEEcCCCCeEEEEEccCCeEEE
Q 018293          260 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-------AGAVFSVAFSEDSPFVLAIGGSKGKLEI  332 (358)
Q Consensus       260 ~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~dg~i~v  332 (358)
                      ...+.+++++|..+++++.....+.+.++|.... +.....+..-       -..-..|+|.++|+ ++++ ++-+.++.
T Consensus       172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~n~~y~  248 (255)
T 3qqz_A          172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEPNRFYR  248 (255)
T ss_dssp             SSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETTTEEEE
T ss_pred             cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCCceEEE
Confidence            3457899999987677788788888999997654 4445555421       12567899999998 5665 55666766


Q ss_pred             EEc
Q 018293          333 WDT  335 (358)
Q Consensus       333 w~~  335 (358)
                      +.-
T Consensus       249 f~~  251 (255)
T 3qqz_A          249 FTP  251 (255)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.96  E-value=3.6e-08  Score=82.11  Aligned_cols=180  Identities=10%  Similarity=0.009  Sum_probs=118.6

Q ss_pred             EEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEE
Q 018293          137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW  216 (358)
Q Consensus       137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  216 (358)
                      .+..++.++.+..+|.+ ++...........+.++...+++ . +..++.++.+..+|.. ++...........+.++..
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~  184 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI  184 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence            57778888999999988 77766666555556777777666 4 6678888999999988 5443322223345666777


Q ss_pred             cCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce
Q 018293          217 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  296 (358)
Q Consensus       217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  296 (358)
                      .+++  .+.+++  +.|..+| .++         ............+.++...+++  .|..++.++.+..+|. +++. 
T Consensus       185 d~~g--~l~v~t--~~l~~~d-~~g---------~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~-~g~~-  246 (330)
T 3hxj_A          185 GKDG--TIYFGS--DKVYAIN-PDG---------TEKWNFYAGYWTVTRPAISEDG--TIYVTSLDGHLYAINP-DGTE-  246 (330)
T ss_dssp             CTTC--CEEEES--SSEEEEC-TTS---------CEEEEECCSSCCCSCCEECTTS--CEEEEETTTEEEEECT-TSCE-
T ss_pred             cCCC--EEEEEe--CEEEEEC-CCC---------cEEEEEccCCcceeceEECCCC--eEEEEcCCCeEEEECC-CCCE-
Confidence            6633  355665  7899999 554         4445555555667888888765  4566777888888885 3432 


Q ss_pred             eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                       ..........+..+...+++.  +..++.+|.|..+|. +++.+.
T Consensus       247 -~~~~~~~~~~~~~~~~~~~g~--l~v~t~~ggl~~~d~-~g~~~~  288 (330)
T 3hxj_A          247 -KWRFKTGKRIESSPVIGNTDT--IYFGSYDGHLYAINP-DGTEKW  288 (330)
T ss_dssp             -EEEEECSSCCCSCCEECTTSC--EEEECTTCEEEEECT-TSCEEE
T ss_pred             -eEEeeCCCCccccceEcCCCe--EEEecCCCCEEEECC-CCcEEE
Confidence             223322233344456666776  455788888999995 555443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.96  E-value=1.6e-06  Score=71.56  Aligned_cols=210  Identities=9%  Similarity=0.074  Sum_probs=134.5

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee-eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN-LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS  201 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  201 (358)
                      ..+.+++|.+.++.++.+-...+.|..+++..+... ..+...-.....+++.+.++.++++-...+.|.++++......
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            456789999875666666667789999998765322 2222222456788898766466666667788999998754332


Q ss_pred             cceeeecCCeeeEEEcCCCCCeEEEEe-cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe
Q 018293          202 GFKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       202 ~~~~~~~~~i~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~  280 (358)
                      ............++++|.++.++++-. ..+.|..+++...         .........-...+.++++|+++.+.++-+
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~---------~~~~~~~~~l~~Pnglavd~~~~~lY~aD~  185 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---------SRFIIINSEIYWPNGLTLDYEEQKLYWADA  185 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC---------SCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC---------CeEEEEECCCCCccEEEEeccCCEEEEEEC
Confidence            222233356788999986664444442 3578888887643         111112222344689999997756666666


Q ss_pred             CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          281 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       281 ~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      ..+.|..+|+.......+.  .........+++..+  .++.+-...+.|..++..+++......
T Consensus       186 ~~~~I~~~d~dG~~~~~~~--~~~~~~P~glav~~~--~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          186 KLNFIHKSNLDGTNRQAVV--KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             TTTEEEEEETTSCSCEEEE--CSCCSCEEEEEEETT--EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCEEEEEcCCCCceEEEe--cCCCCCceEEEEeCC--EEEEEecCCCeEEEEECCCCCceEEEe
Confidence            6788999998765432222  222344567777543  367777778899999998887655443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.95  E-value=1.8e-07  Score=85.51  Aligned_cols=276  Identities=10%  Similarity=-0.006  Sum_probs=142.0

Q ss_pred             ccC-CCcEEEEEEecCCC------ceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCC-C
Q 018293            3 INP-NDAVIVCARNEDDV------SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-E   74 (358)
Q Consensus         3 ~~p-~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-d   74 (358)
                      +.| ++.+++.|....+.      ..-.+++|+.....-..+..   ...+....|.     +..+..+++++++|+. +
T Consensus       193 v~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~---~~~~~~~~~~-----~~~~~~~g~lyv~GG~~~  264 (656)
T 1k3i_A          193 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV---TVTKHDMFCP-----GISMDGNGQIVVTGGNDA  264 (656)
T ss_dssp             EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE---EECSCCCSSC-----EEEECTTSCEEEECSSST
T ss_pred             EEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc---cCCCCCCccc-----cccCCCCCCEEEeCCCCC
Confidence            456 78888888654321      23468889887653222211   1111111121     1233578999999984 4


Q ss_pred             CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE-cC-----CeEE
Q 018293           75 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-AD-----KQVK  148 (358)
Q Consensus        75 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d-----g~v~  148 (358)
                      +.+.+||..+.+-..                         ...+...... .++...++ +++++.|+ .+     ..+.
T Consensus       265 ~~v~~yd~~t~~W~~-------------------------~~~~~~~R~~-~s~~~~~d-g~iyv~GG~~~~~~~~~~~e  317 (656)
T 1k3i_A          265 KKTSLYDSSSDSWIP-------------------------GPDMQVARGY-QSSATMSD-GRVFTIGGSWSGGVFEKNGE  317 (656)
T ss_dssp             TCEEEEEGGGTEEEE-------------------------CCCCSSCCSS-CEEEECTT-SCEEEECCCCCSSSCCCCEE
T ss_pred             CceEEecCcCCceeE-------------------------CCCCCccccc-cceEEecC-CeEEEEeCcccCCcccccce
Confidence            689999987532111                         0011111111 23334456 56777887 34     5699


Q ss_pred             EEECCCCceeeee----cccccceeeEEEcCCCCcEEEEEeCCC---------cEEEEEcccCCCccceeeec-------
Q 018293          149 IWDVAAGKCNLTL----EHHTDKVQAVAWNHHSPQILLSGSFDR---------SVVMKDARISTHSGFKWAVA-------  208 (358)
Q Consensus       149 iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~-------  208 (358)
                      +||..+.+....-    ......-....+..++ ..++.++.+|         .+..||..+...........       
T Consensus       318 ~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~  396 (656)
T 1k3i_A          318 VYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP  396 (656)
T ss_dssp             EEETTTTEEEEETTSCSGGGCCCCTTGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred             EeCCCCCcceeCCCccccccccccccceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCC
Confidence            9999877533210    0000000001122334 4555665554         45678877654222111111       


Q ss_pred             --CCeeeEEEcCCCCCeEEEEecCC-----------eEEEEEcccCCCCCCCCCCCccEEEe---ecC-CceeEEEecCC
Q 018293          209 --ADVESLAWDPHAEHSFVVSLEDG-----------TIKGFDIRTAKSDPDSTSQQSSFTLH---AHD-KAVCTISYNPL  271 (358)
Q Consensus       209 --~~i~~~~~~~~~~~~~~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~-~~i~~i~~~~~  271 (358)
                        ..-.++.+...++.+++.|+.++           .+.+||..+..          .....   ... ..-.+.+..|+
T Consensus       397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~----------W~~~~~~~mp~~R~~~~~~~l~~  466 (656)
T 1k3i_A          397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP----------NTVFASNGLYFARTFHTSVVLPD  466 (656)
T ss_dssp             CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC----------EEEECTTCCSSCCBSCEEEECTT
T ss_pred             CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC----------eeEEccCCCCCCcccCCeEECCC
Confidence              12234444444566777877542           57777776541          11111   111 12234556677


Q ss_pred             CCcEEEEEeCC-----------CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEcc
Q 018293          272 VPNLLATGSTD-----------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS  326 (358)
Q Consensus       272 ~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  326 (358)
                      + ++++.|+.+           ..+.+||..+.+...+..............+.|+|+ +++.|+.
T Consensus       467 g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~-v~v~GG~  530 (656)
T 1k3i_A          467 G-STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGR-VFNGGGG  530 (656)
T ss_dssp             S-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSC-EEEEECC
T ss_pred             C-CEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcE-EEecCCC
Confidence            7 788888754           458999998876433222222222233455678998 6888874

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.94  E-value=1.4e-06  Score=71.70  Aligned_cols=223  Identities=13%  Similarity=0.086  Sum_probs=129.6

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      +++++|+++++-..++.|..||.+...  ..                        ..   .....+..+++.+++ ++++
T Consensus        38 a~~~~g~lyv~d~~~~~I~~~d~~g~~--~~------------------------~~---~~~~~p~gia~~~dG-~l~v   87 (306)
T 2p4o_A           38 ASAPDGTIFVTNHEVGEIVSITPDGNQ--QI------------------------HA---TVEGKVSGLAFTSNG-DLVA   87 (306)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCCE--EE------------------------EE---ECSSEEEEEEECTTS-CEEE
T ss_pred             EECCCCCEEEEeCCCCeEEEECCCCce--EE------------------------EE---eCCCCceeEEEcCCC-cEEE
Confidence            348899888887788999988875311  00                        00   012358899999994 4555


Q ss_pred             EEEcC-C-eEEEEECCCCceeeeecc-cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC-cc---------ceee
Q 018293          140 SASAD-K-QVKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SG---------FKWA  206 (358)
Q Consensus       140 s~~~d-g-~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~---------~~~~  206 (358)
                      +.... + .|..+|..+++....... .......++..+++ ..+++-..++.|..+|...+.. ..         ....
T Consensus        88 ad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~  166 (306)
T 2p4o_A           88 TGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES  166 (306)
T ss_dssp             EEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred             EeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence            54332 2 477777777765332221 12223445555544 4455444688888888764311 00         0000


Q ss_pred             ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc-CCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcE
Q 018293          207 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT-AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  285 (358)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i  285 (358)
                      .-.....+  +++++.++++-...+.|..||+.. +..       .....+.. ......+++.++| +++++....+.|
T Consensus       167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~-------~~~~~~~~-~~~P~gi~vd~dG-~l~va~~~~~~V  235 (306)
T 2p4o_A          167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP-------GEPEIFVE-QTNIDDFAFDVEG-NLYGATHIYNSV  235 (306)
T ss_dssp             CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB-------CCCEEEEE-SCCCSSEEEBTTC-CEEEECBTTCCE
T ss_pred             CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC-------CccEEEec-cCCCCCeEECCCC-CEEEEeCCCCeE
Confidence            11123444  676655666666788999999875 211       11112211 1345778999998 777776667889


Q ss_pred             EEEecCCCCceeeEecCCCCceeEEEEEc---CCCCeEEEEEc
Q 018293          286 KLWDLSNNQPSCIASRNPKAGAVFSVAFS---EDSPFVLAIGG  325 (358)
Q Consensus       286 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~  325 (358)
                      .++|.. ++...+..........++++|.   |++..++++..
T Consensus       236 ~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          236 VRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             EEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            999975 4432222333223457899998   88876666654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.94  E-value=6.6e-07  Score=69.57  Aligned_cols=189  Identities=12%  Similarity=0.055  Sum_probs=122.6

Q ss_pred             ccEEEEecCCCCCcEEEEEEcC--CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293          123 DSVLGLAWNKEFRNILASASAD--KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  200 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  200 (358)
                      .-...+.|++  +.++.+.+.+  ..|+.+|+++++.+..+.... ..........++++.+..-.++.+.++|..+.+.
T Consensus        21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~   97 (243)
T 3mbr_X           21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTP   97 (243)
T ss_dssp             CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEE
T ss_pred             cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcE
Confidence            3466888986  3566666665  489999999999988776332 2222222223436666677899999999988776


Q ss_pred             ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec--C---CceeEEEecCCCCcE
Q 018293          201 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--D---KAVCTISYNPLVPNL  275 (358)
Q Consensus       201 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~---~~i~~i~~~~~~~~~  275 (358)
                      ..... ....-..++  +++. .++.+..++.|.++|..+.         +....+...  .   ..++.+.+. +| .+
T Consensus        98 ~~ti~-~~~~Gwglt--~dg~-~L~vSdgs~~l~~iDp~t~---------~~~~~I~V~~~g~~~~~lNeLe~~-~G-~l  162 (243)
T 3mbr_X           98 RARFR-YPGEGWALT--SDDS-HLYMSDGTAVIRKLDPDTL---------QQVGSIKVTAGGRPLDNLNELEWV-NG-EL  162 (243)
T ss_dssp             EEEEE-CSSCCCEEE--ECSS-CEEEECSSSEEEEECTTTC---------CEEEEEECEETTEECCCEEEEEEE-TT-EE
T ss_pred             EEEEe-CCCCceEEe--eCCC-EEEEECCCCeEEEEeCCCC---------eEEEEEEEccCCcccccceeeEEe-CC-EE
Confidence            65332 223334554  4344 5555566889999999886         444444332  1   245666766 34 55


Q ss_pred             EEEEeCCCcEEEEecCCCCceeeEecCC-----------CCceeEEEEEcCCCCeEEEEEccCCe
Q 018293          276 LATGSTDKMVKLWDLSNNQPSCIASRNP-----------KAGAVFSVAFSEDSPFVLAIGGSKGK  329 (358)
Q Consensus       276 l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~l~~~~~dg~  329 (358)
                      .+..-.+..|.+.|..+++......+.+           .....+.|+++|++..++++|-.=-.
T Consensus       163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~  227 (243)
T 3mbr_X          163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPM  227 (243)
T ss_dssp             EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSE
T ss_pred             EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence            5444457789999999998554444321           22467899999988878888765443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.90  E-value=3.3e-06  Score=78.00  Aligned_cols=212  Identities=12%  Similarity=0.064  Sum_probs=135.0

Q ss_pred             cccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC----ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc
Q 018293          122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  197 (358)
Q Consensus       122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  197 (358)
                      ...+..|+|.+..+.++++-...+.|..+++...    .....+.........|++.+.+.+++++-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            4567889999865656666666788999988753    222333323455678999887756666667788999999875


Q ss_pred             CCCccceeeecCCeeeEEEcCCCCCeEEEEecC-CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEE
Q 018293          198 STHSGFKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  276 (358)
Q Consensus       198 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l  276 (358)
                      ................|+++|.++.++++-... +.|...++...         .....+...-...+.|++.+.++.++
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---------~~~~lv~~~l~~P~GLavD~~~~~LY  573 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------DIYSLVTENIQWPNGITLDLLSGRLY  573 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------CEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---------ceEEEEeCCCCCceEEEEecCCCeEE
Confidence            543332222334588999999666555554333 77888888643         22222222335678999998774555


Q ss_pred             EEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          277 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       277 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      ++-...+.|..+++.......+......-.....|++..+  +++++-...+.|...+..+++.+...
T Consensus       574 waD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~--~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          574 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT--EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC--EEEEEECCCCEEEEEeCCCCcceEEe
Confidence            5555667899999977654444332222233456666433  47777777889999988777665544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.86  E-value=7.9e-07  Score=82.52  Aligned_cols=238  Identities=11%  Similarity=-0.001  Sum_probs=125.4

Q ss_pred             Ccccc-CCCceEEecC-----CCCeEEEEEcccc-cCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec
Q 018293           58 PLKDR-EKGNFMAVGS-----MEPAIEIWDLDVI-DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW  130 (358)
Q Consensus        58 ~~~~s-~~~~~l~~g~-----~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  130 (358)
                      +++|| |||++||.+.     ....|+++|+.++ +.+..                          .+   ......++|
T Consensus       178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--------------------------~~---~~~~~~~~W  228 (751)
T 2xe4_A          178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--------------------------KV---SGTNGEIVW  228 (751)
T ss_dssp             EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--------------------------CE---EEECSCCEE
T ss_pred             eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--------------------------cc---cCceeeEEE
Confidence            34569 9999988543     2236999999876 42110                          00   112346889


Q ss_pred             CCCCCcEEEEEEcC-----CeEEEEECCCCcee--eeec-ccccceeeEEEcCCCCcEEEEEe-C--CCcEEEEEcccCC
Q 018293          131 NKEFRNILASASAD-----KQVKIWDVAAGKCN--LTLE-HHTDKVQAVAWNHHSPQILLSGS-F--DRSVVMKDARIST  199 (358)
Q Consensus       131 ~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~l~~~~-~--dg~i~i~d~~~~~  199 (358)
                      +|++. .|+....|     ..|.++++.+++..  ..+. ........+.|+|++ ++|+... .  ...|.++|+.++.
T Consensus       229 spDg~-~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~l~~~d~~~~~  306 (751)
T 2xe4_A          229 GPDHT-SLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT-NTLCIGSQSPETAEVHLLDLRKGN  306 (751)
T ss_dssp             CSSTT-EEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS-SEEEEEEECSSCEEEEEEESSSCT
T ss_pred             ecCCC-EEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC-CEEEEEecCCCCceEEEEECCCCC
Confidence            99954 55555554     36888888776422  2222 222345678999999 5555443 2  3467888887652


Q ss_pred             --C--ccceeeecCCeeeEEEcCCCCCeEEEEecC----CeEEEEEcccCCCCCCCCCCCccEE-EeecCC--ceeEEEe
Q 018293          200 --H--SGFKWAVAADVESLAWDPHAEHSFVVSLED----GTIKGFDIRTAKSDPDSTSQQSSFT-LHAHDK--AVCTISY  268 (358)
Q Consensus       200 --~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~--~i~~i~~  268 (358)
                        .  .............+.|+. ++.+++.+..+    ..|..+|+.+.         ..... +..+..  .+..+.+
T Consensus       307 ~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~---------~~~~~~li~~~~~~~l~~~~~  376 (751)
T 2xe4_A          307 AHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQP---------SDWSHVLVDHSEDVFMESIAV  376 (751)
T ss_dssp             TCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTST---------TCCCCEEECCCSSEEEEEEEE
T ss_pred             CCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCc---------ccceeeEECCCCCcEEEEEEE
Confidence              2  111122234445555544 55455555544    25666666532         11111 222322  3455555


Q ss_pred             cCCCCcEEEEEeCCCc--EEEEec-------CCCCceeeEecCCCCceeEEEEE----cCCCCeEEEEEccC---CeEEE
Q 018293          269 NPLVPNLLATGSTDKM--VKLWDL-------SNNQPSCIASRNPKAGAVFSVAF----SEDSPFVLAIGGSK---GKLEI  332 (358)
Q Consensus       269 ~~~~~~~l~~~~~dg~--i~i~d~-------~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~l~~~~~d---g~i~v  332 (358)
                      .  +..++++...++.  |.++++       .+++......+... ..+..+.+    ++++..++++.+..   +.+..
T Consensus       377 ~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~-~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~  453 (751)
T 2xe4_A          377 R--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEP-IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFD  453 (751)
T ss_dssp             C--SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCS-SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEE
T ss_pred             E--CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCc-eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEE
Confidence            4  4467777777886  455564       33330111122221 22334433    34665455555443   35777


Q ss_pred             EEccCCC
Q 018293          333 WDTLSDA  339 (358)
Q Consensus       333 w~~~~~~  339 (358)
                      +|+.+++
T Consensus       454 ~d~~~~~  460 (751)
T 2xe4_A          454 VSPQDHS  460 (751)
T ss_dssp             ECTTTCC
T ss_pred             EECCCCc
Confidence            7877654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.85  E-value=9.9e-08  Score=74.84  Aligned_cols=175  Identities=14%  Similarity=0.129  Sum_probs=109.9

Q ss_pred             cCCCceEEecCCCC--eEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           62 REKGNFMAVGSMEP--AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        62 s~~~~~l~~g~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      + ++.++.+.+.+|  .|+++|+.+++......+.                         .+ .---.++..  ++.+.+
T Consensus        51 ~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-------------------------~~-~FgeGit~~--g~~ly~  101 (262)
T 3nol_A           51 R-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-------------------------KR-YFGEGISDW--KDKIVG  101 (262)
T ss_dssp             E-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-------------------------TT-CCEEEEEEE--TTEEEE
T ss_pred             E-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-------------------------Cc-cceeEEEEe--CCEEEE
Confidence            5 666777777666  8999999887665533221                         11 011123332  344555


Q ss_pred             EEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee--c---CCeeeE
Q 018293          140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV--A---ADVESL  214 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~i~~~  214 (358)
                      +...++.+.+||.++.+.+.++.... .-..++  +++ ..|+.+..++.|.++|..+.+......-.  .   ..++.+
T Consensus       102 ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt--~dg-~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL  177 (262)
T 3nol_A          102 LTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLT--HND-QYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL  177 (262)
T ss_dssp             EESSSSEEEEEETTTCCEEEEEECSS-CCCCEE--ECS-SCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE
T ss_pred             EEeeCCEEEEEECccCcEEEEEECCC-CceEEe--cCC-CEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee
Confidence            55678999999999999999887433 223444  566 44555556788999999887765432221  1   334557


Q ss_pred             EEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec------------CCceeEEEecCCCCcEEEEEe
Q 018293          215 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------------DKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       215 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~------------~~~i~~i~~~~~~~~~l~~~~  280 (358)
                      .|.  ++.+++..-.++.|.+.|.+++         +.+..+...            ..-.+.|+++|++..+++||-
T Consensus       178 e~~--~G~lyan~w~~~~I~vIDp~tG---------~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          178 EWV--DGEIFANVWQTNKIVRIDPETG---------KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEE--TTEEEEEETTSSEEEEECTTTC---------BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEE--CCEEEEEEccCCeEEEEECCCC---------cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            776  3445555556889999999987         444443321            234689999998855666653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.85  E-value=5.2e-07  Score=80.80  Aligned_cols=242  Identities=10%  Similarity=0.015  Sum_probs=135.7

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      .+..+++++.|+.|..+|..+++..........                  .........++    .. + + .++.++.
T Consensus       114 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~------------------~~~~~~~~~P~----v~-~-g-~v~vg~~  168 (571)
T 2ad6_A          114 GAGQIVKKQANGHLLALDAKTGKINWEVEVCDP------------------KVGSTLTQAPF----VA-K-D-TVLMGCS  168 (571)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCCG------------------GGTCBCCSCCE----EE-T-T-EEEEECB
T ss_pred             ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCC------------------CccceeccCCE----EE-C-C-EEEEEec
Confidence            356788888899999999988766543221100                  00000011111    11 2 3 4555554


Q ss_pred             ------CCeEEEEECCCCceeeeecccccc--------------------------------------eeeEEEcCCCCc
Q 018293          144 ------DKQVKIWDVAAGKCNLTLEHHTDK--------------------------------------VQAVAWNHHSPQ  179 (358)
Q Consensus       144 ------dg~v~iwd~~~~~~~~~~~~~~~~--------------------------------------v~~~~~~~~~~~  179 (358)
                            ++.|..+|.++|+.+.++......                                      ...+++.++. .
T Consensus       169 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g  247 (571)
T 2ad6_A          169 GAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-N  247 (571)
T ss_dssp             CGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-T
T ss_pred             CCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCC-C
Confidence                  789999999999988766532111                                      0124566655 4


Q ss_pred             EEEEEeCC----------------CcEEEEEcccCCCccceeeec---------CCeeeEEEcCCCC--CeEEEEecCCe
Q 018293          180 ILLSGSFD----------------RSVVMKDARISTHSGFKWAVA---------ADVESLAWDPHAE--HSFVVSLEDGT  232 (358)
Q Consensus       180 ~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~--~~~~~~~~dg~  232 (358)
                      .++.+..+                +.|..+|.++++..-......         ....-+....++.  ..++.++.+|.
T Consensus       248 ~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~  327 (571)
T 2ad6_A          248 LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGI  327 (571)
T ss_dssp             EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSE
T ss_pred             eEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcE
Confidence            55555432                358889998877643222110         0111112112232  35677888999


Q ss_pred             EEEEEcccCCCCCCCCCCCccEEEeecC-------------Cce--------------------------eEEEecCCCC
Q 018293          233 IKGFDIRTAKSDPDSTSQQSSFTLHAHD-------------KAV--------------------------CTISYNPLVP  273 (358)
Q Consensus       233 i~i~d~~~~~~~~~~~~~~~~~~~~~~~-------------~~i--------------------------~~i~~~~~~~  273 (358)
                      +.++|..+++.         +.......             .++                          ..++++|+. 
T Consensus       328 l~~lD~~tG~~---------~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~-  397 (571)
T 2ad6_A          328 LYTLNRENGNL---------IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES-  397 (571)
T ss_dssp             EEEEETTTCCE---------EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT-
T ss_pred             EEEEECCCCCE---------EeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC-
Confidence            99999988742         22221100             011                          245677776 


Q ss_pred             cEEEEEe-------------------------------------CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293          274 NLLATGS-------------------------------------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       274 ~~l~~~~-------------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                      .++++..                                     .+|.|..||..+++..-.....   ..+....+...
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~  474 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK---FAAWGGTLYTK  474 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES---SCCCSBCEEET
T ss_pred             CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC---CCccceeEEEC
Confidence            4555443                                     3478999999988743222222   12222222333


Q ss_pred             CCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          317 SPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       317 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      +. +++.++.||.|+.||..+++.+.+.-
T Consensus       475 gg-~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          475 GG-LVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             TT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CC-EEEEEcCCCeEEEEECCCCCEEEEEe
Confidence            44 45668999999999999999886644

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.84  E-value=1e-05  Score=75.08  Aligned_cols=244  Identities=7%  Similarity=-0.033  Sum_probs=127.7

Q ss_pred             ccc-CCCcEEEEEEecCCCceEEEEEEeccCC-CCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC-----
Q 018293            2 TIN-PNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-----   74 (358)
Q Consensus         2 ~~~-p~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----   74 (358)
                      .+| |+|+.|+.+...+....-++|+++...+ ....    .         .+.+....+.|+|||+.|+....|     
T Consensus       180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~----~---------~~~~~~~~~~WspDg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA----D---------KVSGTNGEIVWGPDHTSLFYVTKDETLRE  246 (751)
T ss_dssp             EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC----C---------CEEEECSCCEECSSTTEEEEEEECTTCCE
T ss_pred             EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC----c---------cccCceeeEEEecCCCEEEEEEECCCCCC
Confidence            579 9999999886654223456899988764 3110    0         111222345569999888776654     


Q ss_pred             CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE-c--CCeEEEEE
Q 018293           75 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-A--DKQVKIWD  151 (358)
Q Consensus        75 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~--dg~v~iwd  151 (358)
                      ..|+++++.+.......                       +.. .........+.|+|++. +|+..+ .  ...|.++|
T Consensus       247 ~~v~~~~lgt~~~~~~l-----------------------v~~-~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~l~~~d  301 (751)
T 2xe4_A          247 NKVWRHVMGKLQSEDVC-----------------------LYE-EHNPLFSAFMYKAADTN-TLCIGSQSPETAEVHLLD  301 (751)
T ss_dssp             EEEEEEETTSCGGGCEE-----------------------EEE-CCCTTCEEEEEECTTSS-EEEEEEECSSCEEEEEEE
T ss_pred             CEEEEEECCCCchhcEE-----------------------EEe-cCCCceEEEEEECCCCC-EEEEEecCCCCceEEEEE
Confidence            25777777543211100                       000 01223456789999955 554443 2  34688889


Q ss_pred             CCCCc--e--eeeecccccceeeEEEcCCCCcEEEEEeCC--C--cEEEEEcccCCCccc-eeeecC--CeeeEEEcCCC
Q 018293          152 VAAGK--C--NLTLEHHTDKVQAVAWNHHSPQILLSGSFD--R--SVVMKDARISTHSGF-KWAVAA--DVESLAWDPHA  220 (358)
Q Consensus       152 ~~~~~--~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g--~i~i~d~~~~~~~~~-~~~~~~--~i~~~~~~~~~  220 (358)
                      +.++.  .  ............++.|+..+ .+++.+..+  +  .|..+|+.+...... ...+..  .+..+.+.  +
T Consensus       302 ~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~  378 (751)
T 2xe4_A          302 LRKGNAHNTLEIVRPREKGVRYDVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--S  378 (751)
T ss_dssp             SSSCTTCCCEEESSCCCTTCCEEEEEETTT-EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--S
T ss_pred             CCCCCCCceeEEeecCCCCceEEEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--C
Confidence            87752  2  22223334455566655433 555565554  3  566666654222122 222332  34455554  4


Q ss_pred             CCeEEEEecCCeEEE--EEc-------ccCCCCCCCCCCCccEEEeec-CCceeEEEe----cCCCCcEEEEEeCC---C
Q 018293          221 EHSFVVSLEDGTIKG--FDI-------RTAKSDPDSTSQQSSFTLHAH-DKAVCTISY----NPLVPNLLATGSTD---K  283 (358)
Q Consensus       221 ~~~~~~~~~dg~i~i--~d~-------~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~----~~~~~~~l~~~~~d---g  283 (358)
                      +.++++...++..++  +|+       ..+         .....+... ...+..+.+    ++++..++++.+..   .
T Consensus       379 ~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g---------~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~  449 (751)
T 2xe4_A          379 NYLVVAGRRAGLTRIWTMMADSQDGVFKAG---------TGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPN  449 (751)
T ss_dssp             SEEEEEEEETTEEEEEEEECCTTTSCCCTT---------TCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEE
T ss_pred             CEEEEEEEeCCEEEEEEEecccccccccCC---------ccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCC
Confidence            557777788886554  454       111         102222111 122334433    34554566665543   3


Q ss_pred             cEEEEecCCCCc
Q 018293          284 MVKLWDLSNNQP  295 (358)
Q Consensus       284 ~i~i~d~~~~~~  295 (358)
                      .+..+|+.+++.
T Consensus       450 ~~~~~d~~~~~~  461 (751)
T 2xe4_A          450 TWFDVSPQDHSR  461 (751)
T ss_dssp             EEEEECTTTCCE
T ss_pred             EEEEEECCCCcE
Confidence            477788877664

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.82  E-value=9.3e-07  Score=79.18  Aligned_cols=59  Identities=12%  Similarity=0.049  Sum_probs=37.5

Q ss_pred             CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          282 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       282 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      +|.|..||+.+++..-.....   .+...-.+...+. +++.++.||.|+.||.++|+.+-+.
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg-~vf~gt~dg~l~A~D~~tG~~lW~~  510 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMER---FAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKF  510 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cCeEEEEECCCCCEEeEecCC---CCccCcceEecCC-EEEEECCCCeEEEEECCCCCEEEEe
Confidence            477888999888742222211   1111111222344 4666899999999999999988664

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.82  E-value=5.6e-06  Score=69.36  Aligned_cols=198  Identities=11%  Similarity=0.017  Sum_probs=128.5

Q ss_pred             EEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce
Q 018293          125 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  204 (358)
Q Consensus       125 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  204 (358)
                      -+|.+..++ . +|+.+ ....|+..++........+.. ...+..++|++.+..++++-...+.|..+++.........
T Consensus        36 ~~C~~~~~~-~-~ll~~-~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  111 (349)
T 3v64_C           36 RSCKALGPE-P-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  111 (349)
T ss_dssp             SCEEESSSC-C-EEEEE-CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             CcccccccC-c-eeEee-cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence            456666664 4 33333 345688888876554444443 3457899999876455666567788999998765433222


Q ss_pred             eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC-C
Q 018293          205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD-K  283 (358)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-g  283 (358)
                      .........+++++.+++++++-...+.|.+.++...         .....+...-.....+++.|.++.++++-... +
T Consensus       112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~---------~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~  182 (349)
T 3v64_C          112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA---------HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTP  182 (349)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC---------SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred             eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC---------ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCC
Confidence            2222456788998866767777777889999998754         22222222334568999999764566665555 7


Q ss_pred             cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          284 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       284 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      .|..+++.......+  ....-.....++++|++..++++-...+.|..+++..
T Consensus       183 ~I~r~~~dG~~~~~~--~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          183 RIEASSMDGSGRRII--ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             EEEEEETTSCSCEES--CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEEeCCCCCcEEE--EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            899998876542211  2222345788999987776777777788999999864

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.79  E-value=9.6e-06  Score=66.94  Aligned_cols=182  Identities=11%  Similarity=0.009  Sum_probs=117.5

Q ss_pred             CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC---CCccceee-ecCCeeeEEEcCC
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS---THSGFKWA-VAADVESLAWDPH  219 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~-~~~~i~~~~~~~~  219 (358)
                      ...|+..|+.+.+....+.. ...+..++|++.+..++++-..++.|..+++...   ........ .......+++++.
T Consensus         9 ~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~   87 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI   87 (316)
T ss_dssp             BSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             CCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence            35689999987765554443 3457899999876466666666789999998762   22111111 2245678899876


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC-CcEEEEecCCCCceee
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD-KMVKLWDLSNNQPSCI  298 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~  298 (358)
                      +++++++-...+.|.++|+...         .....+.........+++.|.++.++++.... +.|..+++.......+
T Consensus        88 ~~~ly~~d~~~~~I~~~~~~g~---------~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~  158 (316)
T 1ijq_A           88 HSNIYWTDSVLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  158 (316)
T ss_dssp             TTEEEEEETTTTEEEEEETTSS---------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred             CCeEEEEECCCCEEEEEeCCCC---------ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE
Confidence            6666677677889999998643         22222222334568999999764555554433 6788888865442111


Q ss_pred             EecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                        ....-.....+++++++..++++-...+.|..+|+..
T Consensus       159 --~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          159 --VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             --ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             --EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence              1222345788999998776777777778999999864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.79  E-value=5.6e-08  Score=89.04  Aligned_cols=211  Identities=12%  Similarity=0.067  Sum_probs=127.3

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCC----CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAA----GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  198 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  198 (358)
                      ..+..++|.+.++.++++-...+.|..+++..    ......+.........|++.+.+..++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            34668899887455555555668899999875    22222222222345678888655466666566788999998754


Q ss_pred             CCccceeeecCCeeeEEEcCCCCCeEEEEecC-CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEE
Q 018293          199 THSGFKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA  277 (358)
Q Consensus       199 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~  277 (358)
                      ...............++++|.++.++++-... +.|..+++...         .........-...+.|+++|+++.+++
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~---------~~~~l~~~~l~~PnGlavd~~~~~LY~  556 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------DIYSLVTENIQWPNGITLDLLSGRLYW  556 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC---------CCCEESCSSCSSCCCEEECTTTCCEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC---------CeeEEEeCCCCCccEEEEeccCCEEEE
Confidence            33221112234567889999766566554333 67877777543         111111112234578999998757777


Q ss_pred             EEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          278 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       278 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      +-+..+.|.++++.......+............|++..+  .++++....+.|..++..+++.+..+
T Consensus       557 aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          557 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             EETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             EecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEEe
Confidence            777778899999976543222221111222344566544  47777777889999998777655443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.77  E-value=5.5e-05  Score=70.92  Aligned_cols=197  Identities=10%  Similarity=0.126  Sum_probs=128.5

Q ss_pred             cccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeec-------ccccceeeEEEcCCCCcEEEEEeCCCcEEEEE
Q 018293          122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-------HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  194 (358)
Q Consensus       122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  194 (358)
                      ...|.++...++|.  |..|+.+ -|.+||..+++......       -....|.++...++| . +..|+.++-|..++
T Consensus       262 ~~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~-lWigt~~~Gl~~~~  336 (795)
T 4a2l_A          262 SNYIRSLAMDSQNR--LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG-G-MWLGTYFGGLNYYH  336 (795)
T ss_dssp             CSBEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS-C-EEEEESSSCEEEEC
T ss_pred             CCeEEEEEEcCCCC--EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-C-EEEEECCCCeEEeC
Confidence            35799999988843  4445555 58899987765433221       123578999988887 4 66778888899998


Q ss_pred             cccCCCcccee------eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe---------ec
Q 018293          195 ARISTHSGFKW------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---------AH  259 (358)
Q Consensus       195 ~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---------~~  259 (358)
                      ...........      .....|.++..++++  .+.+|+.++-|..||..+..          ...+.         ..
T Consensus       337 ~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g--~lWiGt~~~Gl~~~~~~~~~----------~~~~~~~~~~~~~~l~  404 (795)
T 4a2l_A          337 PIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK--NLWIGTNDGGLNLYNPITQR----------FTSYTLQEDESARGIG  404 (795)
T ss_dssp             GGGGSSEEECCCTTSSSCSCSSEEEEEECTTS--CEEEEESSSCEEEECTTTCC----------EEEECCC------CCS
T ss_pred             CCcccceEEcCCCCCCCCCCCeeEEEEECCCC--CEEEEECCCCeEEEcCCCCc----------EEEEecCCCCcccCCC
Confidence            76554322111      123458888887743  57778888789999987542          11111         12


Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC--CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          260 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       260 ~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ...|.++...+++ .+|..|+.++-|..||..+++........  .....|.++...++|. +.+ |+.+ .+.+||..+
T Consensus       405 ~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwi-gt~~-Gl~~~~~~~  480 (795)
T 4a2l_A          405 SNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWL-GTLS-ALVRFNPEQ  480 (795)
T ss_dssp             CSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEE-EESS-CEEEEETTT
T ss_pred             CccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEE-EecC-ceeEEeCCC
Confidence            3568899888876 64777888778999999887632211100  2245799999999988 454 4444 588899876


Q ss_pred             CC
Q 018293          338 DA  339 (358)
Q Consensus       338 ~~  339 (358)
                      ++
T Consensus       481 ~~  482 (795)
T 4a2l_A          481 RS  482 (795)
T ss_dssp             TE
T ss_pred             Ce
Confidence            53

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.73  E-value=1.9e-05  Score=70.83  Aligned_cols=61  Identities=8%  Similarity=0.083  Sum_probs=39.0

Q ss_pred             CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293          282 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       282 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                      +|.|..||+.+++..-.....   .++..-.....+. +++.++.||.++.||.++|+.+.+.-.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES---SCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEECCCCCEEEEecCC---CCCcccceEeCCC-EEEEECCCCcEEEEECCCCCEEEEecC
Confidence            578999999998843222221   1111111122344 566799999999999999998866433

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.73  E-value=2.6e-05  Score=73.06  Aligned_cols=198  Identities=13%  Similarity=0.162  Sum_probs=127.3

Q ss_pred             cccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecc-------cccceeeEEEcCCCCcEEEEEeCCCcEEEEE
Q 018293          122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  194 (358)
Q Consensus       122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  194 (358)
                      ...|.++...++ + .|..|+.++-+..||..+++.......       ....|.++...+++ . +..|+.+ -|.+||
T Consensus       214 ~~~i~~i~~d~~-g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~  288 (795)
T 4a2l_A          214 TKQIQAILQQSP-T-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQN-R-LWIGTFN-DLNIYH  288 (795)
T ss_dssp             CCCEEEEEEEET-T-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTS-C-EEEEESS-CEEEEE
T ss_pred             CCeeEEEEEcCC-C-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCC-C-EEEEeCC-hhheEc
Confidence            456888887776 4 345566555589999877654332211       13568999988887 4 4455555 588888


Q ss_pred             cccCCCcccee-------eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe-------ecC
Q 018293          195 ARISTHSGFKW-------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-------AHD  260 (358)
Q Consensus       195 ~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~  260 (358)
                      ..+........       .....|.++..++++  .+..|+.++-|..|+......          ..+.       ...
T Consensus       289 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~----------~~~~~~~~~~~l~~  356 (795)
T 4a2l_A          289 EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRF----------KNIRNIPYKNSLSD  356 (795)
T ss_dssp             TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSS----------EEECCCTTSSSCSC
T ss_pred             CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccc----------eEEcCCCCCCCCCC
Confidence            76554322110       123568888888744  477888888899998765421          1111       123


Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec------CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEE
Q 018293          261 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR------NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  334 (358)
Q Consensus       261 ~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~  334 (358)
                      ..|.++...+++  .|..|+.++-|..||..+++.......      ......|.++...++|+ +|..|+.++.|..||
T Consensus       357 ~~V~~i~~d~~g--~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d  433 (795)
T 4a2l_A          357 NVVSCIVEDKDK--NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKS-LVYIGTHAGGLSILH  433 (795)
T ss_dssp             SSEEEEEECTTS--CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTT-EEEEEETTTEEEEEE
T ss_pred             CeeEEEEECCCC--CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCC-EEEEEeCcCceeEEe
Confidence            468899888876  456678887899999887653221111      01235689999988887 245577777899999


Q ss_pred             ccCCC
Q 018293          335 TLSDA  339 (358)
Q Consensus       335 ~~~~~  339 (358)
                      ..+++
T Consensus       434 ~~~~~  438 (795)
T 4a2l_A          434 RNSGQ  438 (795)
T ss_dssp             TTTCC
T ss_pred             CCCCc
Confidence            87764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.73  E-value=1.1e-06  Score=69.02  Aligned_cols=168  Identities=8%  Similarity=0.016  Sum_probs=114.1

Q ss_pred             ceeeeeccccc--ceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeee--EEEcCCCCCeEEEEecCC
Q 018293          156 KCNLTLEHHTD--KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVES--LAWDPHAEHSFVVSLEDG  231 (358)
Q Consensus       156 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~dg  231 (358)
                      +.+.++. |..  ....+.|+. + .++.+.+.+|.|+.+|+.+++.....  .......  +++.  ++.++++.-.++
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~--g~~Ly~ltw~~~  116 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD--GERLYQLTWTEG  116 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC--SSCEEEEESSSC
T ss_pred             EEEEEEc-CCCccccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe--CCEEEEEEccCC
Confidence            3445553 443  336788873 3 78888889999999999999887755  4444433  5554  456777777899


Q ss_pred             eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCc---ee
Q 018293          232 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG---AV  308 (358)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~v  308 (358)
                      .+.+||..+.         +.+.++..... -..++  +++ ..|+.+..++.|.++|..+.+.........+..   .+
T Consensus       117 ~v~V~D~~Tl---------~~~~ti~~~~e-GwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~l  183 (268)
T 3nok_A          117 LLFTWSGMPP---------QRERTTRYSGE-GWGLC--YWN-GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELI  183 (268)
T ss_dssp             EEEEEETTTT---------EEEEEEECSSC-CCCEE--EET-TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             EEEEEECCcC---------cEEEEEeCCCc-eeEEe--cCC-CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccc
Confidence            9999999987         56666654322 23444  556 555555668899999999987544333332222   35


Q ss_pred             EEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          309 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       309 ~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      +.+.|. +|+ +++..-.++.|.+.|..+++.+...-
T Consensus       184 NeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Id  218 (268)
T 3nok_A          184 NELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVID  218 (268)
T ss_dssp             EEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred             cccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEE
Confidence            667777 675 77777678899999999998776543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.72  E-value=1.1e-06  Score=68.31  Aligned_cols=173  Identities=12%  Similarity=0.074  Sum_probs=108.9

Q ss_pred             CceEEecCCC--CeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE
Q 018293           65 GNFMAVGSME--PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  142 (358)
Q Consensus        65 ~~~l~~g~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  142 (358)
                      +.++.+.+.+  ..|+++|+.+++......+..                         +.. --.+++.  ++.+.....
T Consensus        31 ~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-------------------------~~f-geGi~~~--~~~ly~ltw   82 (243)
T 3mbr_X           31 GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-------------------------PYF-GAGIVAW--RDRLIQLTW   82 (243)
T ss_dssp             TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-------------------------TCC-EEEEEEE--TTEEEEEES
T ss_pred             CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-------------------------Ccc-eeEEEEe--CCEEEEEEe
Confidence            5666666665  499999999877655432211                         110 1122332  345666666


Q ss_pred             cCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeec-----CCeeeEEEc
Q 018293          143 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-----ADVESLAWD  217 (358)
Q Consensus       143 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~  217 (358)
                      .++.+.+||.++.+.+.++.... .-..++  +++ ..|+.+..++.|.++|..+.+......-..     ..++.+.|.
T Consensus        83 ~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg-~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~  158 (243)
T 3mbr_X           83 RNHEGFVYDLATLTPRARFRYPG-EGWALT--SDD-SHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV  158 (243)
T ss_dssp             SSSEEEEEETTTTEEEEEEECSS-CCCEEE--ECS-SCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             eCCEEEEEECCcCcEEEEEeCCC-CceEEe--eCC-CEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe
Confidence            78999999999999999887433 234454  456 445556668899999998876554322211     245566665


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee-------------cCCceeEEEecCCCCcEEEEEe
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-------------HDKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~i~~~~~~~~~l~~~~  280 (358)
                        ++.+++..-.+..|.+.|.+++         +.+..+..             ...-.+.|+++|++.++++||-
T Consensus       159 --~G~lyanvw~s~~I~vIDp~tG---------~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          159 --NGELLANVWLTSRIARIDPASG---------KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             --TTEEEEEETTTTEEEEECTTTC---------BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             --CCEEEEEECCCCeEEEEECCCC---------CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence              3435544546789999999887         33333331             1235689999998866666664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.72  E-value=3.6e-07  Score=83.54  Aligned_cols=244  Identities=11%  Similarity=0.154  Sum_probs=128.7

Q ss_pred             ccccC-CCceEEecCCCC-----------eEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEE
Q 018293           59 LKDRE-KGNFMAVGSMEP-----------AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL  126 (358)
Q Consensus        59 ~~~s~-~~~~l~~g~~dg-----------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  126 (358)
                      .++.+ ++++++.|+.++           .+.+||..+.+-......                        ...+.....
T Consensus       191 ~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~------------------------~~~~~~~~~  246 (656)
T 1k3i_A          191 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT------------------------VTKHDMFCP  246 (656)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE------------------------ECSCCCSSC
T ss_pred             EEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc------------------------CCCCCCccc
Confidence            34456 888888887543           577888765432211000                        011222233


Q ss_pred             EEecCCCCCcEEEEEE-cCCeEEEEECCCCceeeeecccc-cceeeEEEcCCCCcEEEEEe-CC-----CcEEEEEcccC
Q 018293          127 GLAWNKEFRNILASAS-ADKQVKIWDVAAGKCNLTLEHHT-DKVQAVAWNHHSPQILLSGS-FD-----RSVVMKDARIS  198 (358)
Q Consensus       127 ~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~  198 (358)
                      ++++..+ +.+++.|+ .+..+.+||..+.+....-.... ..-.+++..+++ ++++.|+ .+     ..+.+||..+.
T Consensus       247 ~~~~~~~-g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          247 GISMDGN-GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EEEECTT-SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cccCCCC-CCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCC-eEEEEeCcccCCcccccceEeCCCCC
Confidence            4566677 56888887 45689999998765332211111 112345566677 7888887 34     46899998765


Q ss_pred             CCccce----eeecCCeeeEEEcCCCCCeEEEEecCC---------eEEEEEcccCCCCCCCCCCCccEEEeecC-----
Q 018293          199 THSGFK----WAVAADVESLAWDPHAEHSFVVSLEDG---------TIKGFDIRTAKSDPDSTSQQSSFTLHAHD-----  260 (358)
Q Consensus       199 ~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-----  260 (358)
                      +-....    ......-....+.. ++..++.|+.+|         .+..||..+.         ........+.     
T Consensus       325 ~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~---------~w~~~~~~~~~~~~~  394 (656)
T 1k3i_A          325 TWTSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS---------GDVKSAGKRQSNRGV  394 (656)
T ss_dssp             EEEEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTT---------CEEEEEEECEETTEE
T ss_pred             cceeCCCccccccccccccceeec-CCceEEEECCCCcEEEecCccceeeeecCCc---------ceeecCCcccccccc
Confidence            321100    00000000011122 334555565444         4677887764         2111111111     


Q ss_pred             ----CceeEEEecCCCCcEEEEEeCCC-----------cEEEEecCCCCceeeEecCCCCce-eEEEEEcCCCCeEEEEE
Q 018293          261 ----KAVCTISYNPLVPNLLATGSTDK-----------MVKLWDLSNNQPSCIASRNPKAGA-VFSVAFSEDSPFVLAIG  324 (358)
Q Consensus       261 ----~~i~~i~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~  324 (358)
                          ..-.++.+...++++++.|+.++           .+.+||..+.....+..-...... -.+++..|+++ +++.|
T Consensus       395 ~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~-i~v~G  473 (656)
T 1k3i_A          395 APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS-TFITG  473 (656)
T ss_dssp             CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC-EEEEC
T ss_pred             CCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC-EEEEC
Confidence                12234444443337888887543           578888877763322200112222 23456778998 68888


Q ss_pred             ccC-----------CeEEEEEccCCC
Q 018293          325 GSK-----------GKLEIWDTLSDA  339 (358)
Q Consensus       325 ~~d-----------g~i~vw~~~~~~  339 (358)
                      +.+           ..+.+||..+++
T Consensus       474 G~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          474 GQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             CBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             CcccCcCcCCCCcccceEEEcCCCCc
Confidence            754           468999987643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.72  E-value=6.1e-06  Score=70.17  Aligned_cols=196  Identities=11%  Similarity=0.024  Sum_probs=126.3

Q ss_pred             EEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee
Q 018293          127 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA  206 (358)
Q Consensus       127 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  206 (358)
                      |.+..+. . +|+.+ ....|+..++........+.. ...+..++|.+.+..++++-...+.|..+++...........
T Consensus        81 C~~~~~~-~-~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  156 (386)
T 3v65_B           81 CKALGPE-P-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  156 (386)
T ss_dssp             EEECSSC-C-EEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred             ECCcccc-c-eeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence            4444443 3 34333 346788888876654444443 345789999987646666666778899999876543221222


Q ss_pred             ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC-CcE
Q 018293          207 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD-KMV  285 (358)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-g~i  285 (358)
                      .......+++++.+++++++-...+.|.+.++...         .....+.........+++.|.++.++++-... +.|
T Consensus       157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~---------~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I  227 (386)
T 3v65_B          157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA---------HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI  227 (386)
T ss_dssp             SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC---------SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC---------ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEE
Confidence            22346778888866767777777788988887643         22222233335568999999774555555555 778


Q ss_pred             EEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          286 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       286 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ..+++.......+  ....-.....++++|++..++++-...+.|..+++..
T Consensus       228 ~r~~~dG~~~~~~--~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          228 EASSMDGSGRRII--ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             EEEETTSCSCEEE--ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             EEEeCCCCCcEEE--EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            8888876543222  2222345788999987776777777788999999864

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.70  E-value=6.7e-05  Score=67.81  Aligned_cols=206  Identities=11%  Similarity=0.060  Sum_probs=135.1

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  202 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  202 (358)
                      ..+..|+|.+.++.++.+-..++.|..+++........+.........+++.+.+++++++-...+.|.+.++.......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            45789999998666666666788999999875543333332234567889887764666666677889999987544322


Q ss_pred             ceeeecCCeeeEEEcCCCCCeEEEE-ecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC
Q 018293          203 FKWAVAADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  281 (358)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~  281 (358)
                      .....-.....++++|..+.++++- +..+.|...++...         . ...+...-...+.++++++++.+.++-..
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~---------~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~  186 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS---------E-RTTLVPNVGRANGLTIDYAKRRLYWTDLD  186 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------S-CEEEECSCSSEEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC---------c-eEEEECCCCCcceEEEccccCEEEEEECC
Confidence            2223335578999999666444443 23567877777643         2 22222334567899999987466666666


Q ss_pred             CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          282 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       282 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      .+.|..+|+.......+..   .......+++.. + +++++-...+.|...|..+++....
T Consensus       187 ~~~I~~~d~dG~~~~v~~~---~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg~~~~~  243 (628)
T 4a0p_A          187 TNLIESSNMLGLNREVIAD---DLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSGQNRTI  243 (628)
T ss_dssp             TTEEEEEETTSCSCEEEEE---CCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             CCEEEEEcCCCCceEEeec---cCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCCCceEE
Confidence            7889999997765422222   223345777765 3 3677777788999999877765543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.70  E-value=3e-06  Score=70.23  Aligned_cols=198  Identities=8%  Similarity=0.027  Sum_probs=119.0

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeec--------------------ccccceeeEEEcC-CCCcEE
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE--------------------HHTDKVQAVAWNH-HSPQIL  181 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------------------~~~~~v~~~~~~~-~~~~~l  181 (358)
                      ....+++|.++ +.+++++..++.|..||..+++.. .+.                    .....+..+++.+ ++ + |
T Consensus        19 ~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~-l   94 (322)
T 2fp8_A           19 YAPNSFTFDST-NKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-Q-L   94 (322)
T ss_dssp             SCCCCEECCTT-CSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-E-E
T ss_pred             CCceEEEEcCC-CCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC-c-E
Confidence            34567889998 566778888999999998765432 221                    0113468899997 55 4 5


Q ss_pred             EEEeCCCcEEEEEcccCCCccceee----ecCCeeeEEEcC-CCCCeEEEEec-----------------CCeEEEEEcc
Q 018293          182 LSGSFDRSVVMKDARISTHSGFKWA----VAADVESLAWDP-HAEHSFVVSLE-----------------DGTIKGFDIR  239 (358)
Q Consensus       182 ~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~-~~~~~~~~~~~-----------------dg~i~i~d~~  239 (358)
                      +.+...+.+..+|..++........    .......+++.+ ++ +++++-..                 ++.|..||..
T Consensus        95 ~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence            5554455588888765432211111    113467899998 65 35554322                 3678888876


Q ss_pred             cCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC---ceeeEecCCCCceeEEEEEcCC
Q 018293          240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ---PSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                      ++         .. ..+.........++++|++..++++-+..+.|.+|++....   ......   ..+ ...+++.++
T Consensus       174 ~~---------~~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~  239 (322)
T 2fp8_A          174 TK---------ET-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNAD  239 (322)
T ss_dssp             TT---------EE-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTT
T ss_pred             CC---------EE-EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCC
Confidence            54         21 11211223457899999983344454667889999987532   111112   123 678999999


Q ss_pred             CCeEEEEEcc----------CCeEEEEEccCCCcc
Q 018293          317 SPFVLAIGGS----------KGKLEIWDTLSDAGI  341 (358)
Q Consensus       317 ~~~~l~~~~~----------dg~i~vw~~~~~~~~  341 (358)
                      |. ++++...          .+.|..+|.. ++.+
T Consensus       240 G~-l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~  272 (322)
T 2fp8_A          240 GH-FWVSSSEELDGNMHGRVDPKGIKFDEF-GNIL  272 (322)
T ss_dssp             SC-EEEEEEEETTSSTTSCEEEEEEEECTT-SCEE
T ss_pred             CC-EEEEecCcccccccCCCccEEEEECCC-CCEE
Confidence            98 4655443          4567778763 4444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.69  E-value=9.9e-06  Score=69.87  Aligned_cols=206  Identities=7%  Similarity=0.079  Sum_probs=113.7

Q ss_pred             cccEEEEecCCCCCcEEEEEEcCC----eEEEEECCCCcee--eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEc
Q 018293          122 TDSVLGLAWNKEFRNILASASADK----QVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA  195 (358)
Q Consensus       122 ~~~v~~~~~~~~~~~~l~s~~~dg----~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  195 (358)
                      ......++|++++..++++...++    .+.+.+ ..+...  ..+.. ......++++|++..++++-..++.|..++.
T Consensus       178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~  255 (430)
T 3tc9_A          178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDF  255 (430)
T ss_dssp             CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred             CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence            356889999999443444443222    344444 333222  22322 2346788999944376666667889999998


Q ss_pred             ccCCCccce-eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec---------------
Q 018293          196 RISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---------------  259 (358)
Q Consensus       196 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---------------  259 (358)
                      ......... .........++|+|++..++++-...+.|..++........     .....+.+.               
T Consensus       256 ~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~-----~~~~~~ag~~g~~g~~dg~~~~a~  330 (430)
T 3tc9_A          256 TTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRL-----TTPYIVCGQQGAKDWVDGVGKKAR  330 (430)
T ss_dssp             TTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE-----CCCEEEEECTTCBCCBCEEGGGCB
T ss_pred             CCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccc-----cceEEEeccCCCCCCCCCCCcceE
Confidence            755431111 11123477899999765466666678899998876421000     001111111               


Q ss_pred             CCcee-EEEec--------CCCCcEEEEEeCCCcEEEEecCCCCceeeEec-----CC----------CCceeEEEEEcC
Q 018293          260 DKAVC-TISYN--------PLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-----NP----------KAGAVFSVAFSE  315 (358)
Q Consensus       260 ~~~i~-~i~~~--------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~----------~~~~v~~~~~~~  315 (358)
                      -.... .++..        +++ .++++-...+.|+.++. ++....+...     .+          .-.....++++|
T Consensus       331 ~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~  408 (430)
T 3tc9_A          331 MHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE  408 (430)
T ss_dssp             BSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET
T ss_pred             eCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC
Confidence            01122 45443        233 45555555677888883 4432222211     01          012467899999


Q ss_pred             CCCeEEEEEccCCeEEEEEcc
Q 018293          316 DSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       316 ~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      ++..++++-..++.|+.++++
T Consensus       409 ~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          409 ERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             TTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCEEEEEECCCCeEEEEccC
Confidence            544477777777888888764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.68  E-value=7.2e-06  Score=74.97  Aligned_cols=161  Identities=10%  Similarity=0.128  Sum_probs=100.3

Q ss_pred             EEEecCCCCCcEEEEEEcCC-------------------eEEEEECCCCceeeeecc--cc-------cceeeEEEcCCC
Q 018293          126 LGLAWNKEFRNILASASADK-------------------QVKIWDVAAGKCNLTLEH--HT-------DKVQAVAWNHHS  177 (358)
Q Consensus       126 ~~~~~~~~~~~~l~s~~~dg-------------------~v~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~  177 (358)
                      ..+++.|. ..+++.+..++                   .|..+|.++|+.+..++.  |.       .+.....+..++
T Consensus       233 ~~~a~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G  311 (668)
T 1kv9_A          233 DSMAYDPE-LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG  311 (668)
T ss_dssp             SCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             cceEEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence            35677777 45777777665                   499999999998887764  21       222222222344


Q ss_pred             C--cEEEEEeCCCcEEEEEcccCCCcccee--------ee----cCC------------------------eeeEEEcCC
Q 018293          178 P--QILLSGSFDRSVVMKDARISTHSGFKW--------AV----AAD------------------------VESLAWDPH  219 (358)
Q Consensus       178 ~--~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~----~~~------------------------i~~~~~~~~  219 (358)
                      .  ..++.++.+|.++++|..+++.+....        ..    ..+                        -..++++|+
T Consensus       312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~  391 (668)
T 1kv9_A          312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG  391 (668)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred             cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC
Confidence            1  268889999999999998887652110        00    000                        012567775


Q ss_pred             CCCeEEEEe------------------------------------cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCce
Q 018293          220 AEHSFVVSL------------------------------------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  263 (358)
Q Consensus       220 ~~~~~~~~~------------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i  263 (358)
                      .+ ++++..                                    .+|.|..||+.++         +.+.....+. +.
T Consensus       392 ~g-~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG---------~~~W~~~~~~-~~  460 (668)
T 1kv9_A          392 TG-LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQ---------KAAWKVPYPT-HW  460 (668)
T ss_dssp             TT-EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTT---------EEEEEEEESS-SC
T ss_pred             CC-EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCC---------cEEEEccCCC-CC
Confidence            44 443311                                    2378999999887         5555554432 23


Q ss_pred             eEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 018293          264 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  299 (358)
Q Consensus       264 ~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  299 (358)
                      ....+...+ .++++++.|+.++.||.++++.....
T Consensus       461 ~~~~~~t~g-g~vf~g~~dg~l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          461 NGGTLSTAG-NLVFQGTAAGQMHAYSADKGEALWQF  495 (668)
T ss_dssp             CCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cCceeEeCC-CEEEEECCcccchhhhhhcChhheEe
Confidence            333333445 68888999999999999999854333

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.60  E-value=3.2e-05  Score=63.40  Aligned_cols=194  Identities=11%  Similarity=0.156  Sum_probs=122.1

Q ss_pred             CcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCC----CCc--EEEEEeC---CCcEEEEEcc--cCCCccc
Q 018293          135 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH----SPQ--ILLSGSF---DRSVVMKDAR--ISTHSGF  203 (358)
Q Consensus       135 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~l~~~~~---dg~i~i~d~~--~~~~~~~  203 (358)
                      ..+++.....+-+.+||+ +|+.++.+..  +.++.+..-|.    +..  ++++...   +++|.+|++.  +.. ...
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            456777778889999999 8888888863  45666666552    111  3344443   5789999774  322 111


Q ss_pred             e------eeec-CCeeeEEE--cCCCC-CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC
Q 018293          204 K------WAVA-ADVESLAW--DPHAE-HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  273 (358)
Q Consensus       204 ~------~~~~-~~i~~~~~--~~~~~-~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  273 (358)
                      .      .... ..+..+++  +|..+ .++++...+|.+..|++.......  ...+.+..+.. .+.+-.+...+.. 
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~--~~~~lVR~f~l-gsq~EgcvvDd~~-  191 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY--ISGKKVRAFKM-NSQTEGMAADDEY-  191 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC--EEEEEEEEEEC-SSCEEEEEEETTT-
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc--ccceEEEEecC-CCCcceEEEcCCC-
Confidence            1      0111 55667777  77444 368888899999999995421100  00144455544 4567888888876 


Q ss_pred             cEEEEEeCCCcEEEEecCCCC---ceeeEecC-C-CCceeEEEEE--cCCCC-eEEEEEccCCeEEEEEcc
Q 018293          274 NLLATGSTDKMVKLWDLSNNQ---PSCIASRN-P-KAGAVFSVAF--SEDSP-FVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       274 ~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~-~-~~~~v~~~~~--~~~~~-~~l~~~~~dg~i~vw~~~  336 (358)
                      ..|+.+-++..|..++.+...   ...+.... + ....+..|++  .++++ |+++++-.++.+.+||..
T Consensus       192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            788888888777777754221   12333331 2 2346888887  45555 777777678899999996

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.59  E-value=6.3e-05  Score=64.21  Aligned_cols=188  Identities=11%  Similarity=-0.002  Sum_probs=121.0

Q ss_pred             EEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCC----CccceeeecCCee
Q 018293          137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST----HSGFKWAVAADVE  212 (358)
Q Consensus       137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~  212 (358)
                      +|+.+ ....|+..++........+. ....+..++|++.+..++++-...+.|..+++....    .............
T Consensus        85 ~ll~~-~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEE-ETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEe-ccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            44443 34789999988765544444 345678999998774555665667889989886532    1111111334577


Q ss_pred             eEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC-CCcEEEEecC
Q 018293          213 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLS  291 (358)
Q Consensus       213 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~i~d~~  291 (358)
                      .+++++.+++++++-...+.|.+.++...         .....+.........|++.|.++.++++-.. .+.|...++.
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~---------~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d  233 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  233 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTC---------SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCC---------ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence            88888766667777777889999988754         2222233333457899999976455555423 4789999987


Q ss_pred             CCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          292 NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       292 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ......+  ....-.....|++++++..++++-...+.|..+|+..
T Consensus       234 G~~~~~~--~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          234 GVDIYSL--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             SCSCEEE--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCccEEE--EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence            6553222  2222346788999988776777666778999999864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.59  E-value=3.5e-05  Score=66.45  Aligned_cols=205  Identities=8%  Similarity=0.089  Sum_probs=113.3

Q ss_pred             cccEEEEecCCCCCcEEEEEEcC---C-eEEEEECCCCce-eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 018293          122 TDSVLGLAWNKEFRNILASASAD---K-QVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  196 (358)
Q Consensus       122 ~~~v~~~~~~~~~~~~l~s~~~d---g-~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  196 (358)
                      ......+++++++. ++++....   . .+...+...+.. ...+. .......++++|++..++++-..++.|+.+|..
T Consensus       181 ~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~  258 (433)
T 4hw6_A          181 IGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA  258 (433)
T ss_dssp             CSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred             CCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence            35688999999954 55554321   1 133333222111 01121 223456788999442666666677889999987


Q ss_pred             cCCCccceeee--cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec---------------
Q 018293          197 ISTHSGFKWAV--AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---------------  259 (358)
Q Consensus       197 ~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---------------  259 (358)
                      ++.........  ......++|+|++..++++-...+.|+.++........     .....+.+.               
T Consensus       259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~-----~~~~~~ag~~g~~g~~dg~~~~a~  333 (433)
T 4hw6_A          259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL-----AVPYIVCGQHSSPGWVDGMGTGAR  333 (433)
T ss_dssp             TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB-----CCCEEEEECTTCCCCBCEEGGGSB
T ss_pred             CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc-----CcEEEEEecCCCCccCCCcccceE
Confidence            55441112111  12234699999765466666667899998875321100     001111111               


Q ss_pred             CCceeEEEe---------cCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC-----C----------CCceeEEEEEc-
Q 018293          260 DKAVCTISY---------NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-----P----------KAGAVFSVAFS-  314 (358)
Q Consensus       260 ~~~i~~i~~---------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~----------~~~~v~~~~~~-  314 (358)
                      -.....+++         .+++ +++++-...+.|+.++. ++....+.-..     +          .-.....++++ 
T Consensus       334 ~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~  411 (433)
T 4hw6_A          334 LWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDM  411 (433)
T ss_dssp             CSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred             EcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence            123567888         5655 66666666788999985 44322111110     0          01236789999 


Q ss_pred             CCCCeEEEEEccCCeEEEEEcc
Q 018293          315 EDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       315 ~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      ++|. ++++=..++.|+.++++
T Consensus       412 ~~g~-lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          412 KRKC-FYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTTE-EEEEEGGGTEEEEEEEC
T ss_pred             CCCE-EEEEeCCCCEEEEEecC
Confidence            5665 67766677888888764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.56  E-value=4.5e-05  Score=68.32  Aligned_cols=165  Identities=13%  Similarity=0.074  Sum_probs=94.4

Q ss_pred             eEEEEECCCCceeeeecccc----------cceeeEEEcCCCC--cEEEEEeCCCcEEEEEcccCCCccceeeec-----
Q 018293          146 QVKIWDVAAGKCNLTLEHHT----------DKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHSGFKWAVA-----  208 (358)
Q Consensus       146 ~v~iwd~~~~~~~~~~~~~~----------~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----  208 (358)
                      .|..+|.++++.+..++...          .++. +....++.  ..++.++.+|.+.++|..+++.+.......     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            69999999999887775321          1211 22223452  256778899999999998876543211000     


Q ss_pred             --------CCe--------------------------eeEEEcCCCCCeEEEEe--------------------------
Q 018293          209 --------ADV--------------------------ESLAWDPHAEHSFVVSL--------------------------  228 (358)
Q Consensus       209 --------~~i--------------------------~~~~~~~~~~~~~~~~~--------------------------  228 (358)
                              .++                          ..++++|+.+ ++++..                          
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  430 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR-TLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT-EEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC-EEEEEchhccccccccccccccCCccccccce
Confidence                    001                          2456777544 555443                          


Q ss_pred             -----------cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCcee
Q 018293          229 -----------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  297 (358)
Q Consensus       229 -----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  297 (358)
                                 .+|.|..||..++         +.+...... ..+.+..+...+ .+++.++.||.|+.+|.++++..-
T Consensus       431 ~~~~~~~~~~~~~g~l~a~D~~tG---------~~~W~~~~~-~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~~lw  499 (571)
T 2ad6_A          431 MYPGPNGPTKKEMGQIRAFDLTTG---------KAKWTKWEK-FAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKELW  499 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTTC---------CEEEEEEES-SCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEEE
T ss_pred             eccCccccCCCCCCeEEEEECCCC---------CEEEEecCC-CCccceeEEECC-CEEEEEcCCCeEEEEECCCCCEEE
Confidence                       3478888888877         555554432 222222222234 577779999999999999998543


Q ss_pred             eEecCCCCceeEEEEEcCCCCeEEEEE
Q 018293          298 IASRNPKAGAVFSVAFSEDSPFVLAIG  324 (358)
Q Consensus       298 ~~~~~~~~~~v~~~~~~~~~~~~l~~~  324 (358)
                      ....... ..-.-+.+..+|+.++++.
T Consensus       500 ~~~~~~~-~~~~p~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          500 NFKMPSG-GIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             EEECSSC-CCSCCEEEEETTEEEEEEE
T ss_pred             EEeCCCC-cEeeeEEEEECCEEEEEEE
Confidence            3332211 1111234556776334333

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.54  E-value=7.4e-05  Score=61.56  Aligned_cols=182  Identities=10%  Similarity=0.027  Sum_probs=117.8

Q ss_pred             CCeEEEEECCCCc--eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc-eeeecCCeeeEEEcCCC
Q 018293          144 DKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWAVAADVESLAWDPHA  220 (358)
Q Consensus       144 dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~  220 (358)
                      ...|+..++....  ....+. ....+..++|.+.++.++.+-...+.|..+++........ ....-.....+++.+.+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            4679999988663  122222 2235678999987646666666778899999876643221 22222456788998766


Q ss_pred             CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe-CCCcEEEEecCCCCceeeE
Q 018293          221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQPSCIA  299 (358)
Q Consensus       221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~  299 (358)
                      ++++++-...+.|.++++...         ...............+++.|.++.++++-. ..+.|...++.......+ 
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~---------~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-  160 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGS---------LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII-  160 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSC---------SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE-
T ss_pred             CeEEEEECCCCEEEEEECCCC---------cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE-
Confidence            767777777889999998753         222222233345689999987634444432 357788888875442222 


Q ss_pred             ecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          300 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       300 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                       ....-...+.+++++++..++++-+..+.|..+|+..
T Consensus       161 -~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          161 -INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             -ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             -EECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence             1222345678999997776777777788999999864

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.52  E-value=7.5e-05  Score=67.42  Aligned_cols=209  Identities=9%  Similarity=0.079  Sum_probs=128.9

Q ss_pred             cccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce-eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293          122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  200 (358)
Q Consensus       122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  200 (358)
                      -..+..++|++.++.++++=...+.|..+++..... ...+...-.....+++.+.+++++++-...+.|.+.++.....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            345789999987565555555578899999875532 2223322356789999987646666666788999999876543


Q ss_pred             ccceeeecCCeeeEEEcCCCCCeEEEEe-cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE
Q 018293          201 SGFKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  279 (358)
Q Consensus       201 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~  279 (358)
                      .......-.....++++|.++.++++-. ..+.|...++...         .........-...+.++++++++++.++-
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~---------~~~~l~~~~~~~P~Glald~~~~~LY~aD  189 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---------SRFIIINSEIYWPNGLTLDYEEQKLYWAD  189 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC---------SCEEEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC---------ceEEEEeCCCCCCcEEEEEccCCEEEEEe
Confidence            3222233456789999996665555542 2466777776543         22222222334568999999775666666


Q ss_pred             eCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          280 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       280 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      ...+.|..+|+.......+..  ........+++..+  .++++-...+.|...|..+++....
T Consensus       190 ~~~~~I~~~~~dG~~~~~~~~--~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          190 AKLNFIHKSNLDGTNRQAVVK--GSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             TTTCCEEEESSSCCEEC-----------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             CCCCeEEEecCCCCccEEEEe--CCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEE
Confidence            667889999987654322221  11122346677665  4677777788999999988776543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.50  E-value=7.8e-05  Score=61.19  Aligned_cols=221  Identities=8%  Similarity=0.038  Sum_probs=115.8

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCC--eEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP--AIEI   79 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--~i~v   79 (358)
                      .+.|+++++++....+     +|+.++....    ...  .......+..       ++++++|+++++.....  .|..
T Consensus        38 a~~~~g~lyv~d~~~~-----~I~~~d~~g~----~~~--~~~~~~~p~g-------ia~~~dG~l~vad~~~~~~~v~~   99 (306)
T 2p4o_A           38 ASAPDGTIFVTNHEVG-----EIVSITPDGN----QQI--HATVEGKVSG-------LAFTSNGDLVATGWNADSIPVVS   99 (306)
T ss_dssp             EECTTSCEEEEETTTT-----EEEEECTTCC----EEE--EEECSSEEEE-------EEECTTSCEEEEEECTTSCEEEE
T ss_pred             EECCCCCEEEEeCCCC-----eEEEECCCCc----eEE--EEeCCCCcee-------EEEcCCCcEEEEeccCCcceEEE
Confidence            5678888666653444     6777776542    111  1112222333       34588998766654322  3555


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce-e
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-N  158 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~  158 (358)
                      ++..+++... ..                        .. ........++..+. +..+++-..++.|.++|..+++. +
T Consensus       100 ~d~~~g~~~~-~~------------------------~~-~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v  152 (306)
T 2p4o_A          100 LVKSDGTVET-LL------------------------TL-PDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSI  152 (306)
T ss_dssp             EECTTSCEEE-EE------------------------EC-TTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EcCCCCeEEE-EE------------------------eC-CCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeE
Confidence            5654332110 00                        00 01112233343444 44455444588999999775421 1


Q ss_pred             eee---------cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc-CCCcc-ceeeecCCeeeEEEcCCCCCeEEEE
Q 018293          159 LTL---------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSG-FKWAVAADVESLAWDPHAEHSFVVS  227 (358)
Q Consensus       159 ~~~---------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~  227 (358)
                      ...         ...-.....+  ++++..++++-...+.|..+++.. +.... ...........+++++++ +++++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG-~l~va~  229 (306)
T 2p4o_A          153 WLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG-NLYGAT  229 (306)
T ss_dssp             EEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC-CEEEEC
T ss_pred             EEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCC-CEEEEe
Confidence            100         0111234455  777745556666778999999875 22111 111222456789999965 566666


Q ss_pred             ecCCeEEEEEcccCCCCCCCCCCCccE--EEeecCCceeEEEec---CCCCcEEEEEeC
Q 018293          228 LEDGTIKGFDIRTAKSDPDSTSQQSSF--TLHAHDKAVCTISYN---PLVPNLLATGST  281 (358)
Q Consensus       228 ~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~i~~i~~~---~~~~~~l~~~~~  281 (358)
                      ...+.|.++|.. +         ....  .+.......++++|.   |++ ..|++.+.
T Consensus       230 ~~~~~V~~~~~~-G---------~~~~~~~~~~~~~~p~~~a~~g~~~d~-~~LyVt~~  277 (306)
T 2p4o_A          230 HIYNSVVRIAPD-R---------STTIIAQAEQGVIGSTAVAFGQTEGDC-TAIYVVTN  277 (306)
T ss_dssp             BTTCCEEEECTT-C---------CEEEEECGGGTCTTEEEEEECCSTTTT-TEEEEEEC
T ss_pred             CCCCeEEEECCC-C---------CEEEEeecccccCCceEEEEecccCCC-CEEEEECC
Confidence            667889999865 3         2211  122222457899998   776 44444443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.49  E-value=0.00016  Score=62.76  Aligned_cols=213  Identities=8%  Similarity=0.064  Sum_probs=119.6

Q ss_pred             ccEEEEec-------CCCCCcEEEEEEcCC------eEEEEECCC-Ccee-----eeecccccceeeEEEcCCCCcEEEE
Q 018293          123 DSVLGLAW-------NKEFRNILASASADK------QVKIWDVAA-GKCN-----LTLEHHTDKVQAVAWNHHSPQILLS  183 (358)
Q Consensus       123 ~~v~~~~~-------~~~~~~~l~s~~~dg------~v~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~  183 (358)
                      .....|+|       ++++..++++-..++      .|.+.+... ++..     ..+... .....++.+|++..++++
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvt  264 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFN  264 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEE
Confidence            46889999       999543444443331      266665443 2221     222222 245678899966477777


Q ss_pred             EeCCCcEEEEEcc-------cCCC------c-----cceee--ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCC
Q 018293          184 GSFDRSVVMKDAR-------ISTH------S-----GFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS  243 (358)
Q Consensus       184 ~~~dg~i~i~d~~-------~~~~------~-----~~~~~--~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~  243 (358)
                      -..++.|..+|+.       ++..      .     .....  .......++|+|++..++++-+....|+.++......
T Consensus       265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~  344 (496)
T 3kya_A          265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK  344 (496)
T ss_dssp             ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             ECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence            7788899999997       4443      0     01111  1234678999997653555556778898877653210


Q ss_pred             CCCCCCCCccEEEeec---------------CCcee-EEEec-------CCCCcEEEEEeCCCcEEEEecCCCCceeeEe
Q 018293          244 DPDSTSQQSSFTLHAH---------------DKAVC-TISYN-------PLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  300 (358)
Q Consensus       244 ~~~~~~~~~~~~~~~~---------------~~~i~-~i~~~-------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  300 (358)
                      ..     .....+.+.               -.... .++..       +++ .++++-.....|+.++. ++....+.-
T Consensus       345 ~~-----~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~-~G~v~TiaG  417 (496)
T 3kya_A          345 EF-----ITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTP-EGIVSTYAG  417 (496)
T ss_dssp             EE-----CCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECT-TCBEEEEEE
T ss_pred             ee-----cccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeC-CCCEEEEec
Confidence            00     000111111               01123 44443       344 66666667788999984 444222211


Q ss_pred             cC-----------C----------CCceeEEEEEcCC-CCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          301 RN-----------P----------KAGAVFSVAFSED-SPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       301 ~~-----------~----------~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      ..           +          .-.....|+++++ |. ++++=..+..|+.+++.....+...
T Consensus       418 ~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~-lyVaD~~N~rIrki~~~~~~~~~~~  482 (496)
T 3kya_A          418 RGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM-FYVHDQVGHTIRTISMEQEENVAGD  482 (496)
T ss_dssp             SCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE-EEEEETTTTEEEEEEECCCC-----
T ss_pred             ccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE-EEEEeCCCCEEEEEECCCCcccccC
Confidence            10           1          0123678999997 66 6777777889999999887766543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.49  E-value=0.0001  Score=58.15  Aligned_cols=191  Identities=9%  Similarity=0.053  Sum_probs=114.4

Q ss_pred             ccCCCc-eEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           61 DREKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        61 ~s~~~~-~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      ++|+++ ++++...++.|...|.. ++..+...                         +.+ ....-.|++.++ +.+++
T Consensus        34 ~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-------------------------l~g-~~D~EGIa~~~~-g~~~v   85 (255)
T 3qqz_A           34 WSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-------------------------LDF-VKDLETIEYIGD-NQFVI   85 (255)
T ss_dssp             EETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-------------------------CSS-CSSEEEEEECST-TEEEE
T ss_pred             EeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-------------------------cCC-CCChHHeEEeCC-CEEEE
Confidence            367655 55567778888888876 33222211                         111 245677788877 45656


Q ss_pred             EEEcCCeEEEEECCCCce---eeeec------ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc---CCCcccee--
Q 018293          140 SASADKQVKIWDVAAGKC---NLTLE------HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI---STHSGFKW--  205 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~--  205 (358)
                      +.-.++.+.++++.....   +....      ........++|+|.+ +.|+++.+.....+|.+..   ........  
T Consensus        86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~  164 (255)
T 3qqz_A           86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKVNGLLSSNELHISKDK  164 (255)
T ss_dssp             EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred             EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCC-CEEEEEECcCCceEEEEcccccCCceeeecch
Confidence            655677888888765432   12221      123456899999998 4555565555555555541   11111110  


Q ss_pred             -----eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee-c------CCceeEEEecCCCC
Q 018293          206 -----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-H------DKAVCTISYNPLVP  273 (358)
Q Consensus       206 -----~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~------~~~i~~i~~~~~~~  273 (358)
                           .....+..++++|..+.+++.+..+..+..+|....        ......+.. .      -..--.|+|.++| 
T Consensus       165 ~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--------~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-  235 (255)
T 3qqz_A          165 ALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--------VIGEMSLTKGSRGLSHNIKQAEGVAMDASG-  235 (255)
T ss_dssp             HHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--------EEEEEECSTTGGGCSSCCCSEEEEEECTTC-
T ss_pred             hhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--------EEEEEEcCCccCCcccccCCCCeeEECCCC-
Confidence                 112357899999988888888888899999997643        012222221 1      1256899999998 


Q ss_pred             cEEEEEeCCCcEEEEec
Q 018293          274 NLLATGSTDKMVKLWDL  290 (358)
Q Consensus       274 ~~l~~~~~dg~i~i~d~  290 (358)
                      ++.++ ++-+.++.|..
T Consensus       236 ~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          236 NIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             CEEEE-ETTTEEEEEEC
T ss_pred             CEEEE-cCCceEEEEEe
Confidence            64444 77676766654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.47  E-value=0.0002  Score=64.28  Aligned_cols=164  Identities=13%  Similarity=0.112  Sum_probs=94.6

Q ss_pred             CeEEEEECCCCceeeeecc--cc--------cceeeEEEc-CCCC--cEEEEEeCCCcEEEEEcccCCCccceeeec---
Q 018293          145 KQVKIWDVAAGKCNLTLEH--HT--------DKVQAVAWN-HHSP--QILLSGSFDRSVVMKDARISTHSGFKWAVA---  208 (358)
Q Consensus       145 g~v~iwd~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---  208 (358)
                      +.|..+|.++|+.+..++.  |.        .++. +... .++.  ..++.++.+|.++++|.++++.+.......   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            5899999999999887753  21        1121 1221 3452  367889999999999998876542111000   


Q ss_pred             ----------CC--------------------------------eeeEEEcCCCCCeEEEEe------------------
Q 018293          209 ----------AD--------------------------------VESLAWDPHAEHSFVVSL------------------  228 (358)
Q Consensus       209 ----------~~--------------------------------i~~~~~~~~~~~~~~~~~------------------  228 (358)
                                .+                                -..++++|+.+ ++++..                  
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~  448 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG-LFYVPANHWKEDYWTEEVSYTKGS  448 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC-CEEEEEECEEEEEEECCCCCCTTS
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC-EEEEechhcceeeecccccccCCC
Confidence                      00                                01356677544 344332                  


Q ss_pred             ---------------cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293          229 ---------------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  293 (358)
Q Consensus       229 ---------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~  293 (358)
                                     .+|.|..||+.++         +.+.+..... ++..-.....+ .+++.|+.||.++.||.+++
T Consensus       449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG---------~~~W~~~~~~-~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG  517 (582)
T 1flg_A          449 AYLGMGFRIKRMYDDHVGSLRAMDPVSG---------KVVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKAFDAKSG  517 (582)
T ss_dssp             CCCCEEEEEEESCSSCSEEEEEECTTTC---------CEEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEEEETTTC
T ss_pred             ceeccceeecCCCCCCcceEEEEECCCC---------CEEEEecCCC-CCcccceEeCC-CEEEEECCCCcEEEEECCCC
Confidence                           2578888998887         5555544332 22221112224 57888999999999999999


Q ss_pred             CceeeEecCCCCceeEEEEEcCCCCeEEE
Q 018293          294 QPSCIASRNPKAGAVFSVAFSEDSPFVLA  322 (358)
Q Consensus       294 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  322 (358)
                      +.+-....... ..-.-+.+..+|+..++
T Consensus       518 ~~lW~~~~~~g-~~a~P~~y~~~G~qYv~  545 (582)
T 1flg_A          518 KELWKFQTGSG-IVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             CEEEEEECSSC-CCSCCEEEEETTEEEEE
T ss_pred             CEEEEecCCCC-cccCceEEEECCEEEEE
Confidence            85433333211 11112556677764343

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.44  E-value=8.7e-05  Score=63.99  Aligned_cols=200  Identities=7%  Similarity=0.073  Sum_probs=118.4

Q ss_pred             ccEEEEecCCC--CCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCC---C-cEEEEEcc
Q 018293          123 DSVLGLAWNKE--FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---R-SVVMKDAR  196 (358)
Q Consensus       123 ~~v~~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~i~i~d~~  196 (358)
                      .....++|+|+  ++ .|+.+...+.|+.+|..+++...... .......+++++++ .++++....   . .+...+..
T Consensus       139 ~~P~gvavd~~s~~g-~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG-~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYD-DLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNG-DMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             SCCCEEEECTTTTTC-EEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTC-CEEEEECCSCTTSEEEEEECGG
T ss_pred             CCCceEEEccccCCC-EEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCC-CEEEEcCCCCcccceEEEEECC
Confidence            34678899984  34 45555444899999998776554433 44568899999999 544444321   1 23333332


Q ss_pred             cCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-e-ecCCceeEEEecCCCCc
Q 018293          197 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-H-AHDKAVCTISYNPLVPN  274 (358)
Q Consensus       197 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~i~~~~~~~~  274 (358)
                      .................++++|.++.++++-..++.|+.+|..++         .....+ . .....-..++++|++..
T Consensus       216 ~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g---------~~~~~~~~~~~~~~~~~ia~dpdG~~  286 (433)
T 4hw6_A          216 SGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG---------TLTEEEVMMDTKGSNFHIVWHPTGDW  286 (433)
T ss_dssp             GTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC---------CEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred             CCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC---------eEEEEEeccCCCCCcccEEEeCCCCE
Confidence            221111122234556788999965656666667788999998754         221111 1 11122346999999833


Q ss_pred             EEEEEeCCCcEEEEecCC--CCc---eeeEecCC---C---------CceeEEEEE---------cCCCCeEEEEEccCC
Q 018293          275 LLATGSTDKMVKLWDLSN--NQP---SCIASRNP---K---------AGAVFSVAF---------SEDSPFVLAIGGSKG  328 (358)
Q Consensus       275 ~l~~~~~dg~i~i~d~~~--~~~---~~~~~~~~---~---------~~~v~~~~~---------~~~~~~~l~~~~~dg  328 (358)
                      ++++-...+.|+.++...  +..   ..+....+   .         -.....+++         .++|. ++++-...+
T Consensus       287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~  365 (433)
T 4hw6_A          287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSH  365 (433)
T ss_dssp             EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTT
T ss_pred             EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCC
Confidence            555556678899988653  221   11111101   0         123567888         67776 677777778


Q ss_pred             eEEEEEc
Q 018293          329 KLEIWDT  335 (358)
Q Consensus       329 ~i~vw~~  335 (358)
                      .|+.++.
T Consensus       366 ~I~~~~~  372 (433)
T 4hw6_A          366 TVRVLTP  372 (433)
T ss_dssp             EEEEECT
T ss_pred             EEEEECC
Confidence            9999985

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.43  E-value=0.00084  Score=62.77  Aligned_cols=197  Identities=12%  Similarity=-0.007  Sum_probs=124.0

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee---------cccccceeeEEEcCCCCcEEEEEeCCCcEE
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL---------EHHTDKVQAVAWNHHSPQILLSGSFDRSVV  191 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  191 (358)
                      ....|.++...++|.  |-.|+.++-|..++..+.......         ......|.++...+++ . +..|+.++-|.
T Consensus       311 ~~~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~-lWigt~~~Gl~  386 (781)
T 3v9f_A          311 SNASARYIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG-K-LWIGTDGGGIN  386 (781)
T ss_dssp             SSSCEEEEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS-C-EEEEEBSSCEE
T ss_pred             CCCeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC-C-EEEEeCCCcEE
Confidence            346799999988843  556777777999987755432211         0123568888888776 4 56677677788


Q ss_pred             EEEcccCCCccce---eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe---ecCCceeE
Q 018293          192 MKDARISTHSGFK---WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCT  265 (358)
Q Consensus       192 i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~  265 (358)
                      .+|..+.......   ......|.++...+++  .+.+|+.++-+..+|..+++          ...+.   .....|.+
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~----------~~~~~~~~~~~~~v~~  454 (781)
T 3v9f_A          387 VFENGKRVAIYNKENRELLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKK----------FQIIELEKNELLDVRV  454 (781)
T ss_dssp             EEETTEEEEECC-----CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCE----------EEECCSTTTCCCCEEE
T ss_pred             EEECCCCeEEEccCCCCCCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCc----------EEEeccCCCCCCeEEE
Confidence            8987654322211   1123568888877643  46678777778889876542          11111   12456888


Q ss_pred             EEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC---CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          266 ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN---PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       266 i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      +...+++  .|..|+. +-|..||..+++........   .....|.++...++|. +.+ |+.++.|..||..++
T Consensus       455 i~~d~~g--~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWi-gt~~~Gl~~~~~~~~  525 (781)
T 3v9f_A          455 FYEDKNK--KIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWI-GTFGGGVGIYTPDMQ  525 (781)
T ss_dssp             EEECTTS--EEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEE-EESSSCEEEECTTCC
T ss_pred             EEECCCC--CEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-EEE-EEcCCCEEEEeCCCC
Confidence            8888766  4555665 56889998877643332211   1135789999999998 454 454344777887654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.41  E-value=8.6e-05  Score=64.01  Aligned_cols=158  Identities=11%  Similarity=0.154  Sum_probs=98.5

Q ss_pred             ccEEEEecCC-CCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeC-CC----cEEEEEcc
Q 018293          123 DSVLGLAWNK-EFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DR----SVVMKDAR  196 (358)
Q Consensus       123 ~~v~~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg----~i~i~d~~  196 (358)
                      .....|+++| +++ .|+.+...+.|+.+|++.++...... .......++|++++ +.|+++.. ++    .+...+. 
T Consensus       137 ~~P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~v~~~~~-  212 (430)
T 3tc9_A          137 GGAVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEA-DSMIITNDQNNNDRPNNYILTR-  212 (430)
T ss_dssp             SCCCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTS-SEEEEEECCSCTTSEEEEEEEG-
T ss_pred             CCCCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCC-CEEEEEeCCCCcccceEEEEeC-
Confidence            3567889998 434 45555555889999988766444333 44567899999999 64444443 22    2333443 


Q ss_pred             cCCCc-cceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcE
Q 018293          197 ISTHS-GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  275 (358)
Q Consensus       197 ~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  275 (358)
                      .+... ............++++|+++.++++-..++.|..++......       ..+.... .......++|+|++..+
T Consensus       213 ~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~-------~~~~~~~-~~~~P~gia~~pdG~~l  284 (430)
T 3tc9_A          213 ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET-------TPLFTIQ-DSGWEFHIQFHPSGNYA  284 (430)
T ss_dssp             GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-------EEEEECS-SSSCCEEEEECTTSSEE
T ss_pred             CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-------EEEEEcC-CCCcceeEEEcCCCCEE
Confidence            33222 112223456788999996666777777788999999875410       0111111 12346789999998335


Q ss_pred             EEEEeCCCcEEEEecCC
Q 018293          276 LATGSTDKMVKLWDLSN  292 (358)
Q Consensus       276 l~~~~~dg~i~i~d~~~  292 (358)
                      +++-...+.|..++...
T Consensus       285 yv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          285 YIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEETTTTEEEEEEEET
T ss_pred             EEEECCCCEEEEEeCCc
Confidence            55656678899988754

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.35  E-value=0.00037  Score=56.69  Aligned_cols=203  Identities=9%  Similarity=0.021  Sum_probs=119.7

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee-eecc----c--ccceeeEEE---cCCCCcEEEEEeC------
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-TLEH----H--TDKVQAVAW---NHHSPQILLSGSF------  186 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~----~--~~~v~~~~~---~~~~~~~l~~~~~------  186 (358)
                      .-..+++|.+..+.++++.-..++|..||...+.... .+..    .  ...+..|.|   .|++ +++++...      
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af~~   91 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTTCT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcccccccc
Confidence            3445788988745555555589999999987654322 2322    1  124578999   5876 77775442      


Q ss_pred             -------CCcEEEEEcc---cCCCcccee--e-----------ecCCeeeEEEcCCCCCeEEEEecC-CeEEEEEcccCC
Q 018293          187 -------DRSVVMKDAR---ISTHSGFKW--A-----------VAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAK  242 (358)
Q Consensus       187 -------dg~i~i~d~~---~~~~~~~~~--~-----------~~~~i~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~  242 (358)
                             +..+..+|+.   +++......  .           .......++..++ ++..++++.. +.|...+.....
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~-GnaYVt~s~~~~~I~rV~pdG~~  170 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD-GNSYVAFALGMPAIARVSADGKT  170 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT-SCEEEEEEESSCEEEEECTTSCC
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC-CCEEEeCCCCCCeEEEEeCCCCE
Confidence                   6779999998   665543221  1           1124788999995 5577878777 777666665321


Q ss_pred             CCCCCCCCCccEEEe----ecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC--C---CCceeEEE-E
Q 018293          243 SDPDSTSQQSSFTLH----AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN--P---KAGAVFSV-A  312 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~----~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~~~v~~~-~  312 (358)
                              .....+.    ......+.|+++|++ ++|++....|.+..+|+.......+ ...  +   .-.....| .
T Consensus       171 --------~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv~~~v-~~~~~G~~~~~~~~dgilp  240 (334)
T 2p9w_A          171 --------VSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPYAWPE-PVKINGDFGTLSGTEKIVT  240 (334)
T ss_dssp             --------EEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSSCCCE-ECEESSCCCCCTTEEEEEE
T ss_pred             --------EeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCcceee-cccccCCcccccCcccccc
Confidence                    0111111    112236799999999 6666665599999999984322002 111  1   11122332 3


Q ss_pred             EcCCCCeEEEEEccCCeEEEEEccC
Q 018293          313 FSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       313 ~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      .-.+|+-+|++.+..+.+.+.+...
T Consensus       241 ~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          241 VPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEETTEEEEEEEETTEEEEEECSST
T ss_pred             cccCCEEEEEEcCCCCEEEEECCCC
Confidence            3346774466666666666655444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.35  E-value=0.00034  Score=64.79  Aligned_cols=183  Identities=11%  Similarity=0.002  Sum_probs=117.6

Q ss_pred             cCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC----ccceeeecCCeeeEEEcC
Q 018293          143 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH----SGFKWAVAADVESLAWDP  218 (358)
Q Consensus       143 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~  218 (358)
                      ....|+..++........+. ....+..|+|.+....++++-...+.|+.+++.....    .............+++++
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~  480 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  480 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence            34568888887665444444 3456778999986646666666678899888875321    111111234567899988


Q ss_pred             CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC-CcEEEEecCCCCcee
Q 018293          219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD-KMVKLWDLSNNQPSC  297 (358)
Q Consensus       219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~  297 (358)
                      .+++++++-...+.|.+.++...         .....+.........|++.|.++.++++-... +.|...++.......
T Consensus       481 ~~~~LY~tD~~~~~I~v~~ldG~---------~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~  551 (791)
T 3m0c_C          481 IHSNIYWTDSVLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  551 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSS---------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             cCCcEEEEecCCCeEEEEeCCCC---------eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE
Confidence            77777777778899999998754         22222223344578999999763555554333 679889887655322


Q ss_pred             eEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          298 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       298 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      +  ....-.....|++++.+..|+++-...+.|...++..
T Consensus       552 l--v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          552 L--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             E--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             E--EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence            2  2223356788999987776677666677899999854

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.34  E-value=4.4e-06  Score=76.65  Aligned_cols=159  Identities=11%  Similarity=-0.018  Sum_probs=97.3

Q ss_pred             EEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCC-CcEEEEEcccCCCccc
Q 018293          125 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-RSVVMKDARISTHSGF  203 (358)
Q Consensus       125 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~  203 (358)
                      ...|++.+.+++++++-...+.|.++++........+.........+++.|.++.++++-... +.|..+++........
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l  534 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  534 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence            456778765566666656678899999875543333332334567899999764544443333 6788777654332221


Q ss_pred             eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe--ecCCceeEEEecCCCCcEEEEEeC
Q 018293          204 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGST  281 (358)
Q Consensus       204 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~l~~~~~  281 (358)
                      ....-.....|+|+|+++.++++-...+.|..+|+...         .....+.  ........|++..  ..++++...
T Consensus       535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~---------~~~~~~~~~~~~~~P~glavd~--~~lywtd~~  603 (699)
T 1n7d_A          535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---------NRKTILEDEKRLAHPFSLAVFE--DKVFWTDII  603 (699)
T ss_dssp             SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS---------CCEEECCCSSSCSSCCCCEEET--TEEEEECST
T ss_pred             EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC---------ceEEEEecCCcCCCceEeEEEC--CEEEEEeCC
Confidence            11223456789999977777777777889999998643         1111111  1112234555554  256666666


Q ss_pred             CCcEEEEecCCCC
Q 018293          282 DKMVKLWDLSNNQ  294 (358)
Q Consensus       282 dg~i~i~d~~~~~  294 (358)
                      .+.|..++..+++
T Consensus       604 ~~~V~~~d~~~G~  616 (699)
T 1n7d_A          604 NEAIFSANRLTGS  616 (699)
T ss_dssp             TTCEEEEETTTEE
T ss_pred             CCeEEEEEccCCC
Confidence            7889999987665

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.33  E-value=0.0011  Score=61.93  Aligned_cols=201  Identities=11%  Similarity=0.069  Sum_probs=123.9

Q ss_pred             cccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeec--------------ccccceeeEEEcCCCCcEEEEEeCC
Q 018293          122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE--------------HHTDKVQAVAWNHHSPQILLSGSFD  187 (358)
Q Consensus       122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~l~~~~~d  187 (358)
                      ...|.++...++ + .|..|+..+-|.++|..+++......              .....|.++...+++ . +-.|+.+
T Consensus       257 ~~~i~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~-lWigt~~  332 (781)
T 3v9f_A          257 SSYIFSIKQLKD-N-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-N-IWIGTWG  332 (781)
T ss_dssp             CCCEEEEEECTT-S-EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSC-C-EEEEEBS
T ss_pred             CceEEEEEECCC-C-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-C-EEEEecC
Confidence            356999988877 4 45566765668889987664322111              124568899888877 4 6667777


Q ss_pred             CcEEEEEcccCCCcccee---------eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee
Q 018293          188 RSVVMKDARISTHSGFKW---------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA  258 (358)
Q Consensus       188 g~i~i~d~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  258 (358)
                      +-|..++...........         .....|.++...+++  .+..|+.++-|..||..+.....      .......
T Consensus       333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~------~~~~~~~  404 (781)
T 3v9f_A          333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG--KLWIGTDGGGINVFENGKRVAIY------NKENREL  404 (781)
T ss_dssp             SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS--CEEEEEBSSCEEEEETTEEEEEC------C-----C
T ss_pred             CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeEEE------ccCCCCC
Confidence            888888877554322111         123458888887643  57778777778999986542100      0000012


Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          259 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       259 ~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      ....|.++...+++ . |..|+.++-+..+|..+++.............|.++...++|. +.+ |+. +.|..||..++
T Consensus       405 ~~~~v~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwi-gt~-~Gl~~~~~~~~  479 (781)
T 3v9f_A          405 LSNSVLCSLKDSEG-N-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWI-GTH-AGVFVIDLASK  479 (781)
T ss_dssp             CCSBEEEEEECTTS-C-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEE-EET-TEEEEEESSSS
T ss_pred             CCcceEEEEECCCC-C-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEE-EEC-CceEEEeCCCC
Confidence            34568888888766 4 5557776779999987765211110012346799999988887 444 444 56888998765


Q ss_pred             C
Q 018293          339 A  339 (358)
Q Consensus       339 ~  339 (358)
                      +
T Consensus       480 ~  480 (781)
T 3v9f_A          480 K  480 (781)
T ss_dssp             S
T ss_pred             e
Confidence            4

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.29  E-value=0.00038  Score=60.39  Aligned_cols=218  Identities=12%  Similarity=0.052  Sum_probs=124.0

Q ss_pred             cEEEEecCC-CCCcEEEEEEcCCeEEEEECCCCceeeeecc---cccceeeEEE-------cCCCCcEEEEEeCCC----
Q 018293          124 SVLGLAWNK-EFRNILASASADKQVKIWDVAAGKCNLTLEH---HTDKVQAVAW-------NHHSPQILLSGSFDR----  188 (358)
Q Consensus       124 ~v~~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~~l~~~~~dg----  188 (358)
                      ....|+|.| +.++++++-...+.|++.|++++.....+..   .......++|       ++++ ..|+++...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G-~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA-EYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT-CEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCC-CEEEEEeCCCCCcc
Confidence            577899998 4454555555557899999888765544432   1235789999       9998 5455554433    


Q ss_pred             ---cEEEEEccc-CCCcc----ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcc-------cCCCCCCC-CC---
Q 018293          189 ---SVVMKDARI-STHSG----FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR-------TAKSDPDS-TS---  249 (358)
Q Consensus       189 ---~i~i~d~~~-~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~-------~~~~~~~~-~~---  249 (358)
                         .+.+++... +....    ...........++++|+++.++++-..++.|..+|+.       ++...... ..   
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence               266666433 12211    1222234567889999777778888888999999998       44210000 00   


Q ss_pred             -CCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC--c---eeeEec---CCCC---------ceeE-E
Q 018293          250 -QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--P---SCIASR---NPKA---------GAVF-S  310 (358)
Q Consensus       250 -~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~---~~~~~~---~~~~---------~~v~-~  310 (358)
                       ...+... ........++|+|++..++++-+....|+.++.....  .   ..+.-.   .+..         .... .
T Consensus       299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             TEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred             ccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence             0011111 1223457899999993245555567788886654321  1   111111   1110         1233 4


Q ss_pred             EEEc-------CCCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293          311 VAFS-------EDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       311 ~~~~-------~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                      ++..       +++. ++++=..+..|+.++ .++ .+....+
T Consensus       378 v~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~-~~G-~v~TiaG  417 (496)
T 3kya_A          378 VFVKNPDYTGEEEYD-FYFVDRLNFCVRKVT-PEG-IVSTYAG  417 (496)
T ss_dssp             EEEECTTCCSSCCEE-EEEEEGGGTEEEEEC-TTC-BEEEEEE
T ss_pred             EEEccccccccCCCe-EEEEECCCCEEEEEe-CCC-CEEEEec
Confidence            4454       4555 677777788999998 344 3444443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.24  E-value=0.00075  Score=56.45  Aligned_cols=237  Identities=11%  Similarity=0.074  Sum_probs=119.9

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC---C
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---F  134 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~  134 (358)
                      .++|.|+|+++++- .+|.|++++ + ++ .....                    ... ...........|+|+|+   +
T Consensus        35 ~ia~~pdG~l~V~e-~~g~I~~i~-~-g~-~~~~~--------------------~~~-v~~~g~~~p~gia~~pdf~~~   89 (352)
T 2ism_A           35 ALAFLPDGGMLIAE-RPGRIRLFR-E-GR-LSTYA--------------------ELS-VYHRGESGLLGLALHPRFPQE   89 (352)
T ss_dssp             EEEECTTSCEEEEE-TTTEEEEEE-T-TE-EEEEE--------------------ECC-CCCSTTCSEEEEEECTTTTTS
T ss_pred             EEEEcCCCeEEEEe-CCCeEEEEE-C-CC-ccEee--------------------cce-EeecCCCCceeEEECCCCCCC
Confidence            34458999866654 569999988 2 21 11000                    000 11123456889999997   5


Q ss_pred             CcEEEEEEcC-----CeEEEEECCCCc-----ee-eeec---ccccceeeEEEcCCCCcEEEEEeC-------------C
Q 018293          135 RNILASASAD-----KQVKIWDVAAGK-----CN-LTLE---HHTDKVQAVAWNHHSPQILLSGSF-------------D  187 (358)
Q Consensus       135 ~~~l~s~~~d-----g~v~iwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------d  187 (358)
                      +.+.++-..+     +.|..++...++     .+ ..+.   ........++|.|+| .++++.+.             .
T Consensus        90 g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~  168 (352)
T 2ism_A           90 PYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLG  168 (352)
T ss_dssp             CEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSS
T ss_pred             CEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCc
Confidence            5555554433     678888876432     11 1122   111234689999999 66655432             2


Q ss_pred             CcEEEEEcccC------------CCccceeeecCCeeeEEEcCCCCCeEEEEecCCeE------EEEEcccCCCCC----
Q 018293          188 RSVVMKDARIS------------THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI------KGFDIRTAKSDP----  245 (358)
Q Consensus       188 g~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i------~i~d~~~~~~~~----  245 (358)
                      |.|.-++....            .........-.....++|+|+++.++++-.....+      .+.-+..+....    
T Consensus       169 g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~  248 (352)
T 2ism_A          169 GKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRV  248 (352)
T ss_dssp             SEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTC
T ss_pred             eEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcc
Confidence            55666665431            01111111112367789999555555553322221      233333222100    


Q ss_pred             -----CCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce----eeEecCCCCceeEEEEEcCC
Q 018293          246 -----DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS----CIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       246 -----~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~v~~~~~~~~  316 (358)
                           ......+...+..| .....++|. ++ .++++....+.|...++......    ....+......+..+++.||
T Consensus       249 ~g~~~~~~~~~p~~~~~~~-~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd  325 (352)
T 2ism_A          249 VGRGNDPRYRDPLYFWPQG-FPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPD  325 (352)
T ss_dssp             CSCCCCTTSCCCSEECTTC-CCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTT
T ss_pred             cCCCCCCCCcCCeEecCCC-CCCcceEEE-CC-EEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCC
Confidence                 00001233344222 345677774 34 66666656677888877654311    01111112356889999999


Q ss_pred             CCeEEEEE
Q 018293          317 SPFVLAIG  324 (358)
Q Consensus       317 ~~~~l~~~  324 (358)
                      |. ++++.
T Consensus       326 G~-lyv~~  332 (352)
T 2ism_A          326 GA-LYVTT  332 (352)
T ss_dssp             SC-EEEEE
T ss_pred             Cc-EEEEE
Confidence            98 55554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.20  E-value=0.0026  Score=57.46  Aligned_cols=203  Identities=6%  Similarity=0.044  Sum_probs=124.6

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  202 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  202 (358)
                      ..+.+++|.+.++.++++-...+.|..+++........+...-.....+++...+.+++++-+..+.|.+.++.......
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~  428 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI  428 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence            45788999987565565555678899999875443333333334567899987664666666678889999887553322


Q ss_pred             ceeeecCCeeeEEEcCCCCCeEEEEe-cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC
Q 018293          203 FKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  281 (358)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~  281 (358)
                      .....-.....++++|..+.++++-. ..+.|...++...         .........-...+.++++++++++.++=+.
T Consensus       429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~---------~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~  499 (619)
T 3s94_A          429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS---------DRVVLVNTSLGWPNGLALDYDEGKIYWGDAK  499 (619)
T ss_dssp             EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------SCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC---------ccEEEEeCCCCCCeeeEEcccCCEEEEEECC
Confidence            12223356789999996564555532 2356776666532         2222222234567899999876455555556


Q ss_pred             CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          282 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       282 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      .+.|..+++.......+.. . .......++...+  +++.+-...+.|...|..++
T Consensus       500 ~~~I~~~~~dG~~~~~~~~-~-~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          500 TDKIEVMNTDGTGRRVLVE-D-KIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             TTEEEEEESSSCCCEEEEE-C-CCCSSCCEEEETT--EEEEECTTSSCEEEEESSSC
T ss_pred             CCEEEEEecCCCceEEEec-c-CCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCC
Confidence            6789999987655333322 1 1112234555444  46776666677877777776

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.20  E-value=0.0019  Score=58.42  Aligned_cols=207  Identities=8%  Similarity=0.044  Sum_probs=126.9

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecc------cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  196 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  196 (358)
                      ..+.+++|.+.++.++.+=...+.|..+++........+..      ....+..+++...+.++.++-+..+.|.+.++.
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            45778888887454555544567788888654332222321      234578899998875666677778889998886


Q ss_pred             cCCCccceeeecCCeeeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc
Q 018293          197 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  274 (358)
Q Consensus       197 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  274 (358)
                      .................++++|..+.++++-....  .|...++...         .........-...+.+++.+..++
T Consensus       420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~---------~~~~l~~~~l~~P~gla~D~~~~~  490 (628)
T 4a0p_A          420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT---------EREVLFFSGLSKPIALALDSRLGK  490 (628)
T ss_dssp             SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSC---------SCEEEECSSCSCEEEEEEETTTTE
T ss_pred             CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCC---------CcEEEEeccCCCccEEEEeCCCCE
Confidence            43222212223456899999996665666643333  5666665432         222222222345689999997745


Q ss_pred             EEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          275 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       275 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      +.++-+..+.|..+++.......+..  ........++... + +++.+=...+.|...|..+|+...
T Consensus       491 LYw~D~~~~~I~~~~~dG~~r~~~~~--~~~~~P~glav~~-~-~ly~tD~~~~~i~~~~k~~G~~~~  554 (628)
T 4a0p_A          491 LFWADSDLRRIESSDLSGANRIVLED--SNILQPVGLTVFE-N-WLYWIDKQQQMIEKIDMTGREGRT  554 (628)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEEC--SSCSCEEEEEEET-T-EEEEEETTTTEEEEEETTSSSCCE
T ss_pred             EEEEeCCCCEEEEEeCCCCceEEEEc--CCCCCcEEEEEEC-C-EEEEEECCCCeEEEEECcCCCCcE
Confidence            55555556889999997655322221  2233456777765 3 367777777889888888777544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.18  E-value=0.00029  Score=63.24  Aligned_cols=192  Identities=12%  Similarity=0.101  Sum_probs=117.5

Q ss_pred             EEEEEEc-CCeEEEEEC-CCCceeeeecccccc-----------eeeEEEcCCCCcE----EEEEeCCCcEEEEEcccCC
Q 018293          137 ILASASA-DKQVKIWDV-AAGKCNLTLEHHTDK-----------VQAVAWNHHSPQI----LLSGSFDRSVVMKDARIST  199 (358)
Q Consensus       137 ~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~~----l~~~~~dg~i~i~d~~~~~  199 (358)
                      .++.++. ++.|.-+|. ++|+.+.++......           ...+.+.|.+ ..    ++.++.|+.+..+|..+++
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~-g~~~~rV~v~t~dg~l~AlDa~TG~  142 (599)
T 1w6s_A           64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGD-GKTPALILKTQLDGNVAALNAETGE  142 (599)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCC-SSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecC-CcceeEEEEEcCCCEEEEEECCCCC
Confidence            5666666 889999999 899988777532211           1234554333 33    7788889999999999887


Q ss_pred             Cccceeeec----CCeee-EEEcCCCCCeEEEEe------cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCc------
Q 018293          200 HSGFKWAVA----ADVES-LAWDPHAEHSFVVSL------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA------  262 (358)
Q Consensus       200 ~~~~~~~~~----~~i~~-~~~~~~~~~~~~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~------  262 (358)
                      ..-......    ..+.+ ....  ++ .+++++      .+|.|+.+|.+++         +.+..+......      
T Consensus       143 ~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG---------~~~W~~~~~~~~~~~~~~  210 (599)
T 1w6s_A          143 TVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTG---------EQVWRAYATGPDKDLLLA  210 (599)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTC---------CEEEEEESSSCHHHHTBC
T ss_pred             EEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCC---------cEEEEEcCCCCccccccc
Confidence            653221111    01111 1111  23 566655      3799999999988         444443322110      


Q ss_pred             --------------------------------eeEEEecCCCCcEEEEEeCC----------------CcEEEEecCCCC
Q 018293          263 --------------------------------VCTISYNPLVPNLLATGSTD----------------KMVKLWDLSNNQ  294 (358)
Q Consensus       263 --------------------------------i~~i~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~  294 (358)
                                                      -..+++.+.. .+++.++.+                +.|..+|..+++
T Consensus       211 p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~  289 (599)
T 1w6s_A          211 SDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE  289 (599)
T ss_dssp             TTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC
T ss_pred             cccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc
Confidence                                            0134455655 567766654                379999999998


Q ss_pred             ceeeEecCCCC--------ceeEEEEEc-CCCC--eEEEEEccCCeEEEEEccCCCcccc
Q 018293          295 PSCIASRNPKA--------GAVFSVAFS-EDSP--FVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       295 ~~~~~~~~~~~--------~~v~~~~~~-~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      ..-......|.        .++. +... .+|+  .+++.++.+|.++++|..+|+.+.+
T Consensus       290 ~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~  348 (599)
T 1w6s_A          290 AKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (599)
T ss_dssp             EEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             eeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence            64444444442        2222 2222 4663  3577788999999999999998754

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.14  E-value=0.0022  Score=52.73  Aligned_cols=197  Identities=9%  Similarity=0.132  Sum_probs=114.5

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC----CCc-
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE----FRN-  136 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~-  136 (358)
                      .|...+++.....+-+.+||+ .++.++.                           +..  +.++.+..-|.    +.. 
T Consensus        37 dp~~s~ii~t~k~~gL~Vydl-~G~~l~~---------------------------~~~--g~~nnVD~r~~~~l~g~~~   86 (355)
T 3amr_A           37 TPQNSKLITTNKKSGLVVYSL-DGKMLHS---------------------------YNT--GKLNNVDIRYDFPLNGKKV   86 (355)
T ss_dssp             CGGGCEEEEEETTTEEEEEET-TSCEEEE---------------------------ECC--SCEEEEEEEEEEEETTEEE
T ss_pred             CCCccEEEEEcCCCCEEEEcC-CCcEEEE---------------------------ccC--CCcccEEEecccccCCceE
Confidence            344555665666788999999 4443332                           111  34455554442    111 


Q ss_pred             -EEEEEEc---CCeEEEEECC--CCceeeeecc------cc-cceeeEEE--cCCCC-cEEEEEeCCCcEEEEEcccCCC
Q 018293          137 -ILASASA---DKQVKIWDVA--AGKCNLTLEH------HT-DKVQAVAW--NHHSP-QILLSGSFDRSVVMKDARISTH  200 (358)
Q Consensus       137 -~l~s~~~---dg~v~iwd~~--~~~~~~~~~~------~~-~~v~~~~~--~~~~~-~~l~~~~~dg~i~i~d~~~~~~  200 (358)
                       ++++...   +++|++|++.  +++ +..+..      .. ..+..+++  +|... .++++...+|.+..|++.....
T Consensus        87 dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~  165 (355)
T 3amr_A           87 DIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKN  165 (355)
T ss_dssp             EEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTT
T ss_pred             eEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCC
Confidence             2333333   5789999773  333 444421      11 56677888  77543 3688888999999999854211


Q ss_pred             ------ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe-ec-CCceeEEEe--cC
Q 018293          201 ------SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AH-DKAVCTISY--NP  270 (358)
Q Consensus       201 ------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~-~~~i~~i~~--~~  270 (358)
                            ........+.+..+..++. ...|+++-++..|..|+.+......    ...+..+. ++ ...+..|++  .+
T Consensus       166 g~~~~~lVR~f~lgsq~EgcvvDd~-~g~Lyv~eEd~GIw~~da~p~~~~~----~~~v~~~~~g~l~aDvEGLai~~~~  240 (355)
T 3amr_A          166 GYISGKKVRAFKMNSQTEGMAADDE-YGRLYIAEEDEAIWKFSAEPDGGSN----GTVIDRADGRHLTRDIEGLTIYYAA  240 (355)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETT-TTEEEEEETTTEEEEEECSTTSCSC----CEEEEEBSSSSBCSCEEEEEEEECG
T ss_pred             CcccceEEEEecCCCCcceEEEcCC-CCeEEEecccceEEEEeCCcCCCCC----ceEEEEecCCccccCcceEEEEecC
Confidence                  1123445678889999984 4588888888777666654321100    12222221 11 235778887  45


Q ss_pred             CCCcEEEEEe-CCCcEEEEecC-CCC
Q 018293          271 LVPNLLATGS-TDKMVKLWDLS-NNQ  294 (358)
Q Consensus       271 ~~~~~l~~~~-~dg~i~i~d~~-~~~  294 (358)
                      ++..+|++.+ .+..+.+||.. +.+
T Consensus       241 ~g~gyLivSsQG~~s~~Vydr~~~~~  266 (355)
T 3amr_A          241 DGKGYLMASSQGNSSYAIYDRQGKNK  266 (355)
T ss_dssp             GGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred             CCCEEEEEEcCCCCEEEEEECCCCCc
Confidence            5533566555 57789999997 444

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.09  E-value=0.00072  Score=55.18  Aligned_cols=185  Identities=16%  Similarity=0.176  Sum_probs=92.8

Q ss_pred             CcEEEEEEcC-----CeEEEEECCCCc---e--eeeecccccceeeEEEcCCCCcEEEEEeCCC-----cEEEEEcccCC
Q 018293          135 RNILASASAD-----KQVKIWDVAAGK---C--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARIST  199 (358)
Q Consensus       135 ~~~l~s~~~d-----g~v~iwd~~~~~---~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  199 (358)
                      +.+++.|+.+     ..+.+||+.+.+   -  +..+.........+..  ++ .+++.|+.++     .+.+||+.+.+
T Consensus        63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GD-MIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CC-EEEEEcccCCCcccceEEEEcCCCCe
Confidence            4577777755     468999988765   2  2222211111122222  34 6777776543     57788877654


Q ss_pred             Cccceee--ecCCeeeEEEcCCCCCeEEEEecC-----CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC
Q 018293          200 HSGFKWA--VAADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  272 (358)
Q Consensus       200 ~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  272 (358)
                      -......  ......++.+   ++.+++.|+.+     ..+.+||+.+..-       ..+..+.........+.+  ++
T Consensus       140 W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W-------~~~~~~p~~r~~~~~~~~--~~  207 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTGHW-------TNVTPMATKRSGAGVALL--ND  207 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEE-------EEECCCSSCCBSCEEEEE--TT
T ss_pred             EEECCCCCCCcccceEEEE---CCEEEEECCCCCCcccceEEEEeCCCCcE-------EeCCCCCcccccceEEEE--CC
Confidence            2221110  0111122222   34466776654     4588888876421       111111111111122222  33


Q ss_pred             CcEEEEEeCC-----CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC-----CeEEEEEccCC
Q 018293          273 PNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSD  338 (358)
Q Consensus       273 ~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~  338 (358)
                       .+++.|+.+     ..+.+||+.+.+...+............+.+  +++ +++.|+.+     ..+.+||+.+.
T Consensus       208 -~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          208 -HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGR-LYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             -EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBEEEEEEEETTTT
T ss_pred             -EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCE-EEEEcCcCCCcccccEEEEcCCCC
Confidence             677777764     4689999988765433322222222222222  555 67778765     36788888764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.01  E-value=0.0047  Score=51.65  Aligned_cols=246  Identities=12%  Similarity=0.090  Sum_probs=123.2

Q ss_pred             CccccCCCc-eEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC---
Q 018293           58 PLKDREKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---  133 (358)
Q Consensus        58 ~~~~s~~~~-~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---  133 (358)
                      .++|.|+|+ ++++ ...|.|++++.+.. ......                    ...............|+++|+   
T Consensus        22 ~i~~~pdG~~l~V~-e~~G~i~~~~~~g~-~~~~~~--------------------~~~~v~~~g~~g~~gia~~pdf~~   79 (353)
T 2g8s_A           22 ALAFLPDNHGMLIT-LRGGELRHWQAGKG-LSAPLS--------------------GVPDVWAHGQGGLLDVVLAPDFAQ   79 (353)
T ss_dssp             EEEECSTTCCEEEE-ETTTEEEEEETTTE-ECCCCB--------------------SCCCCCCSTTCSEEEEEECTTHHH
T ss_pred             EEEEcCCCCEEEEE-eCCceEEEEeCCCc-eeeEec--------------------CCcccccCCCCCceeEEECCCCCC
Confidence            344589998 5554 45799998875321 100000                    000011123456789999995   


Q ss_pred             CCcEEEEEEc-------CCeEEEEECCCC--c--eee----eec---ccccceeeEEEcCCCCcEEEEEeC---------
Q 018293          134 FRNILASASA-------DKQVKIWDVAAG--K--CNL----TLE---HHTDKVQAVAWNHHSPQILLSGSF---------  186 (358)
Q Consensus       134 ~~~~l~s~~~-------dg~v~iwd~~~~--~--~~~----~~~---~~~~~v~~~~~~~~~~~~l~~~~~---------  186 (358)
                      ++.+.++-..       ...|..|++...  +  ...    .+.   ........+.|.|+| .++++.+.         
T Consensus        80 ~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~  158 (353)
T 2g8s_A           80 SRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQD  158 (353)
T ss_dssp             HCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGC
T ss_pred             CCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCC
Confidence            4545554333       235666666432  1  111    111   111224679999999 66655443         


Q ss_pred             ----CCcEEEEEcccCCC-----------ccceee-ecCCeeeEEEcCCCCCeEEEEecC--CeEEEEEcccCCCC----
Q 018293          187 ----DRSVVMKDARISTH-----------SGFKWA-VAADVESLAWDPHAEHSFVVSLED--GTIKGFDIRTAKSD----  244 (358)
Q Consensus       187 ----dg~i~i~d~~~~~~-----------~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~d--g~i~i~d~~~~~~~----  244 (358)
                          .|.|.-++....-.           ...... --.....++|+|..+ .|.++...  +.=.+.-+..+...    
T Consensus       159 ~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g-~l~~~d~g~~~~dei~~i~~G~nyGwp~  237 (353)
T 2g8s_A          159 LDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSN-ALWLNEHGPRGGDEINIPQKGKNYGWPL  237 (353)
T ss_dssp             TTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTT-EEEEEEECSBSCEEEECCCTTCBCCTTT
T ss_pred             CCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCC-CEEEEecCCCCCcEEeEeccCCcCCCCC
Confidence                24566666653210           111111 123367899999444 34443322  11122222221110    


Q ss_pred             ------------------CCCCCCCccEEEeecCCceeEEEecC-------CCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 018293          245 ------------------PDSTSQQSSFTLHAHDKAVCTISYNP-------LVPNLLATGSTDKMVKLWDLSNNQPSCIA  299 (358)
Q Consensus       245 ------------------~~~~~~~~~~~~~~~~~~i~~i~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  299 (358)
                                        .......+...+..| .....+.|.+       ++ .++++....+.|...++..++.....
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~  315 (353)
T 2g8s_A          238 ATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDKVTEDG  315 (353)
T ss_dssp             BCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred             ccCCCCCCCCccCcccCCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCeEeeeE
Confidence                              000011233344333 3567788864       24 67777667788888888765422222


Q ss_pred             ec-CCCCceeEEEEEcCCCCeEEEEEc-cCCeE
Q 018293          300 SR-NPKAGAVFSVAFSEDSPFVLAIGG-SKGKL  330 (358)
Q Consensus       300 ~~-~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i  330 (358)
                      .+ ......+..+++.|||. ++++.. .+|.|
T Consensus       316 ~~~~~~~~rp~~v~~~pdG~-lyv~td~~~g~I  347 (353)
T 2g8s_A          316 RILTDRGQRIRDVRTGPDGY-LYVLTDESSGEL  347 (353)
T ss_dssp             EESGGGCCCEEEEEECTTSC-EEEEECSTTEEE
T ss_pred             EcccCCCCceeEEEECCCCc-EEEEEeCCCCEE
Confidence            22 12234788999999998 565433 34543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.99  E-value=0.0017  Score=53.13  Aligned_cols=185  Identities=15%  Similarity=0.132  Sum_probs=93.3

Q ss_pred             CcEEEEEEcC----CeEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeCC------CcEEEEEcccCCCcc
Q 018293          135 RNILASASAD----KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHSG  202 (358)
Q Consensus       135 ~~~l~s~~~d----g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~  202 (358)
                      +.+++.|+.+    ..+.+||+.+.+-..  .+.........+.+  ++ .+++.|+.+      ..+.+||..+.+-..
T Consensus        56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EG-KIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TT-EEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CC-EEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            4577777755    678899988775322  22211111122222  44 677777755      458888887653211


Q ss_pred             c--eeeecCCeeeEEEcCCCCCeEEEEec---------CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC
Q 018293          203 F--KWAVAADVESLAWDPHAEHSFVVSLE---------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  271 (358)
Q Consensus       203 ~--~~~~~~~i~~~~~~~~~~~~~~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  271 (358)
                      .  ..........+.+   ++.+++.|+.         -..+.+||+.+..-       ..+..+...... .+++.. +
T Consensus       133 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W-------~~~~~~p~~r~~-~~~~~~-~  200 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW-------TELCPMIEARKN-HGLVFV-K  200 (306)
T ss_dssp             ECCCSSCCBSCEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETTTTEE-------EEECCCSSCCBS-CEEEEE-T
T ss_pred             CCCCcCCcceeEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCCCCeE-------EECCCccchhhc-ceEEEE-C
Confidence            0  0001111122222   3446666653         34588888876521       111111111111 122222 3


Q ss_pred             CCcEEEEEeCC-----CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC-----CeEEEEEccCC
Q 018293          272 VPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSD  338 (358)
Q Consensus       272 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~  338 (358)
                      + .+++.|+.+     ..+.+||+.+.+...+............+.+  ++. +++.|+.+     ..+.+||+.+.
T Consensus       201 ~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          201 D-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSI-VYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             T-EEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTE-EEEEECBCSSSBCCEEEEEETTTT
T ss_pred             C-EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCE-EEEEeCcCCCeeeeeEEEEcCCCC
Confidence            3 677776653     3588999988764333322222222223333  454 78888754     56889998764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.97  E-value=0.0012  Score=53.68  Aligned_cols=162  Identities=9%  Similarity=0.109  Sum_probs=103.3

Q ss_pred             ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee-------cCCeeeEEE---cCCCCCeEEEEec---
Q 018293          163 HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-------AADVESLAW---DPHAEHSFVVSLE---  229 (358)
Q Consensus       163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~---~~~~~~~~~~~~~---  229 (358)
                      .......+++|++....++++.-..++|..||...+.........       ...+..+.|   .|+ +.++++...   
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~a   88 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKS   88 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTT
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccc
Confidence            344455688998866355555558999999998754322211111       113578999   675 545554432   


Q ss_pred             ----------CCeEEEEEcc---cCCCCCCCCCCCccEEEe--ec-----------CCceeEEEecCCCCcEEEEEeCC-
Q 018293          230 ----------DGTIKGFDIR---TAKSDPDSTSQQSSFTLH--AH-----------DKAVCTISYNPLVPNLLATGSTD-  282 (358)
Q Consensus       230 ----------dg~i~i~d~~---~~~~~~~~~~~~~~~~~~--~~-----------~~~i~~i~~~~~~~~~l~~~~~d-  282 (358)
                                +..|..||+.   ++         +.+....  ..           ......++..++| +..++++.. 
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg---------~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~  158 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENS---------KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGM  158 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTC---------CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESS
T ss_pred             ccccccccCCCCEEEEEcCCcCCCC---------CEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCC
Confidence                      6789999998   55         3333332  11           1247899999998 788888877 


Q ss_pred             CcEEEEecCCCCceeeEecCC----CCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          283 KMVKLWDLSNNQPSCIASRNP----KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       283 g~i~i~d~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      +.|...+...... .......    .....+.|+++|+|..+++ ....|.|..+|+.+
T Consensus       159 ~~I~rV~pdG~~~-~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv-~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          159 PAIARVSADGKTV-STFAWESGNGGQRPGYSGITFDPHSNKLIA-FGGPRALTAFDVSK  215 (334)
T ss_dssp             CEEEEECTTSCCE-EEEEECCCCSSSCCSCSEEEEETTTTEEEE-ESSSSSEEEEECSS
T ss_pred             CeEEEEeCCCCEE-eeeeecCCCcccccCcceEEEeCCCCEEEE-EcCCCeEEEEcCCC
Confidence            8877777665432 2111111    1223668999999996555 44499999999874

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.93  E-value=0.0031  Score=52.14  Aligned_cols=194  Identities=10%  Similarity=0.056  Sum_probs=99.7

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee-eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEE-EcccCCC
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN-LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK-DARISTH  200 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~-d~~~~~~  200 (358)
                      ..+..+.+.++ +..+++ +.+|.|.. ....++.- .........+..+.+.+++ .+++.+ .+|.+..- |-. +..
T Consensus       122 ~~~~~i~~~~~-~~~~~~-~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g-~~G~~~~S~d~g-G~t  195 (327)
T 2xbg_A          122 GSPRLIKALGN-GSAEMI-TNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSG-EYVAVS-SRGSFYSTWEPG-QTA  195 (327)
T ss_dssp             SCEEEEEEEET-TEEEEE-ETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTS-CEEEEE-TTSSEEEEECTT-CSS
T ss_pred             CCeEEEEEECC-CCEEEE-eCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCC-cEEEEE-CCCcEEEEeCCC-CCc
Confidence            34667777665 445544 44564432 12223221 1222345578899999987 655554 45554443 321 111


Q ss_pred             c-cceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecCCCCcEEEE
Q 018293          201 S-GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLAT  278 (358)
Q Consensus       201 ~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~  278 (358)
                      - .........+..+.+.+++  .+++.+.+|.+++.+...+..      ...+... ..+...+.++.+.+++ .++++
T Consensus       196 W~~~~~~~~~~~~~~~~~~~g--~~~~~~~~G~~~~s~~D~G~t------W~~~~~~~~~~~~~~~~v~~~~~~-~~~~~  266 (327)
T 2xbg_A          196 WEPHNRTTSRRLHNMGFTPDG--RLWMIVNGGKIAFSDPDNSEN------WGELLSPLRRNSVGFLDLAYRTPN-EVWLA  266 (327)
T ss_dssp             CEEEECCSSSCEEEEEECTTS--CEEEEETTTEEEEEETTEEEE------ECCCBCTTSSCCSCEEEEEESSSS-CEEEE
T ss_pred             eeECCCCCCCccceeEECCCC--CEEEEeCCceEEEecCCCCCe------eEeccCCcccCCcceEEEEecCCC-EEEEE
Confidence            1 1112234567888888854  345556788877764221210      0000000 0112357888898865 55555


Q ss_pred             EeCCCcEEEEecCCCCceeeEe-cCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          279 GSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       279 ~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      + .+|.+ .+....++.-.... .......+.++.|.+++.  +++++.+|.|.-++-
T Consensus       267 g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~--~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          267 G-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ--GFILGQKGILLRYVT  320 (327)
T ss_dssp             E-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE--EEEECSTTEEEEECC
T ss_pred             e-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc--eEEEcCCceEEEEcC
Confidence            4 46766 34444444211111 112235678888876654  445677898776653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.92  E-value=0.0016  Score=53.21  Aligned_cols=186  Identities=16%  Similarity=0.168  Sum_probs=91.6

Q ss_pred             CcEEEEEEcC-----CeEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeCCC-----cEEEEEcccCCCcc
Q 018293          135 RNILASASAD-----KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHSG  202 (358)
Q Consensus       135 ~~~l~s~~~d-----g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~  202 (358)
                      +.+++.|+.+     ..+.+||..+.+-..  .+.........+.+  ++ .+++.|+.++     .+.+||+.+.+-..
T Consensus        62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NG-LLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CC-EEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            5577777754     358899988764322  22211111122222  34 6777777553     46778876543211


Q ss_pred             c--eeeecCCeeeEEEcCCCCCeEEEEecC-------CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC
Q 018293          203 F--KWAVAADVESLAWDPHAEHSFVVSLED-------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  273 (358)
Q Consensus       203 ~--~~~~~~~i~~~~~~~~~~~~~~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  273 (358)
                      .  .........++.+   ++.+++.|+.+       ..+.+||+.+..-       ..+..+.........+.+  ++ 
T Consensus       139 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-------~~~~~~p~~r~~~~~~~~--~~-  205 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNEW-------TYIAEMSTRRSGAGVGVL--NN-  205 (302)
T ss_dssp             ECCCSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTEE-------EEECCCSSCCBSCEEEEE--TT-
T ss_pred             cCCCCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCcE-------EECCCCccccccccEEEE--CC-
Confidence            0  0001111122222   34466666542       3588888876421       111111111111122222  33 


Q ss_pred             cEEEEEeCC-----CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC-----eEEEEEccCCC
Q 018293          274 NLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-----KLEIWDTLSDA  339 (358)
Q Consensus       274 ~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~vw~~~~~~  339 (358)
                      .+++.|+.+     ..+.+||+.+.+...+........... ++. -+++ +++.|+.++     .+.+||+.+.+
T Consensus       206 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~-~~~-~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          206 LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG-VCA-VNGL-LYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE-EEE-ETTE-EEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCe-EEE-ECCE-EEEECCcCCCcccccEEEEcCCCCe
Confidence            677777664     368999998876443332222111111 222 2455 677787654     48999987643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.89  E-value=0.0021  Score=52.32  Aligned_cols=145  Identities=16%  Similarity=0.171  Sum_probs=72.0

Q ss_pred             CcEEEEEEcC-----CeEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeCC-----CcEEEEEcccCCCcc
Q 018293          135 RNILASASAD-----KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARISTHSG  202 (358)
Q Consensus       135 ~~~l~s~~~d-----g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~  202 (358)
                      +.+++.|+.+     ..+.+||+.+.+-..  .+.........+.+  ++ .+++.|+.+     ..+.+||+.+.+-..
T Consensus       113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          113 DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SG-VIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            4577777654     368899988765322  22211111122222  44 677777654     458888887653221


Q ss_pred             ce--eeecCCeeeEEEcCCCCCeEEEEecC-----CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcE
Q 018293          203 FK--WAVAADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  275 (358)
Q Consensus       203 ~~--~~~~~~i~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  275 (358)
                      ..  .........+.+   ++.+++.|+.+     ..+.+||+.+..-       ..+..+.........+.+  ++ .+
T Consensus       190 ~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W-------~~~~~~p~~r~~~~~~~~--~~-~i  256 (301)
T 2vpj_A          190 VTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSW-------TTVTSMTTPRCYVGATVL--RG-RL  256 (301)
T ss_dssp             ECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEE-------EEECCCSSCCBSCEEEEE--TT-EE
T ss_pred             CCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcE-------EECCCCCCcccceeEEEE--CC-EE
Confidence            10  001111122222   34577777654     4688999876521       111111111111122222  34 67


Q ss_pred             EEEEeCC-----CcEEEEecCCCCc
Q 018293          276 LATGSTD-----KMVKLWDLSNNQP  295 (358)
Q Consensus       276 l~~~~~d-----g~i~i~d~~~~~~  295 (358)
                      ++.|+.+     ..+.+||+.+.+.
T Consensus       257 ~v~GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          257 YAIAGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             EEECCBCSSSBEEEEEEEETTTTEE
T ss_pred             EEEcCcCCCcccccEEEEcCCCCeE
Confidence            7777665     3578888887654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.80  E-value=0.0034  Score=51.36  Aligned_cols=185  Identities=11%  Similarity=0.123  Sum_probs=91.3

Q ss_pred             CcEEEEEEc----C-----CeEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeCC-----CcEEEEEcccC
Q 018293          135 RNILASASA----D-----KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARIS  198 (358)
Q Consensus       135 ~~~l~s~~~----d-----g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  198 (358)
                      +.+++.|+.    +     ..+.+||+.+.+-..  .+.........+.+  ++ .+++.|+.+     ..+.+||+.+.
T Consensus        71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DG-HIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TT-EEEEECCEETTEECCCEEEEETTTT
T ss_pred             CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CC-EEEEEcCCCCCcccccEEEECCCCC
Confidence            456666665    2     468899988764322  12111111122222  44 667776643     35778888765


Q ss_pred             CCccc--eeeecCCeeeEEEcCCCCCeEEEEecC-----CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC
Q 018293          199 THSGF--KWAVAADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  271 (358)
Q Consensus       199 ~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  271 (358)
                      +-...  ..........+.+   ++.+++.|+.+     ..+.+||+.+..-.       .+..+.........+.+  +
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-------~~~~~p~~r~~~~~~~~--~  215 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEWR-------MITAMNTIRSGAGVCVL--H  215 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEE-------ECCCCSSCCBSCEEEEE--T
T ss_pred             eEeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeEe-------eCCCCCCccccceEEEE--C
Confidence            32111  0111111222222   34566666654     45888988765211       11111111111122222  3


Q ss_pred             CCcEEEEEeCC-----CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC-----CeEEEEEccCC
Q 018293          272 VPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSD  338 (358)
Q Consensus       272 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~  338 (358)
                      + .+++.|+.+     ..+.+||+.+.+...+........... ++.. +++ +++.|+.+     ..+.+||+.+.
T Consensus       216 ~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~-~~~~-~~~-i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          216 N-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG-ITVH-QGR-IYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             T-EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-EEEE-TTE-EEEECCBCSSCBCCEEEEEETTTT
T ss_pred             C-EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceE-EEEE-CCE-EEEEcCcCCCcccceEEEEcCCCC
Confidence            3 677777664     459999998876433322222111122 2222 455 67778754     45788998764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.72  E-value=0.0071  Score=49.35  Aligned_cols=148  Identities=9%  Similarity=0.046  Sum_probs=73.8

Q ss_pred             CcEEEEEEcC------CeEEEEECCCCceeee--ecccccceeeEEEcCCCCcEEEEEeC---------CCcEEEEEccc
Q 018293          135 RNILASASAD------KQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSF---------DRSVVMKDARI  197 (358)
Q Consensus       135 ~~~l~s~~~d------g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~  197 (358)
                      +.+++.|+.+      ..+.+||..+.+-...  +.........+.+  ++ .+++.|+.         -..+.+||+.+
T Consensus       102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NG-LIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CC-EEEEECCCCCCCCcccccceEEEeCCCC
Confidence            5577777765      4689999887753221  2111111112222  44 66666653         34578888876


Q ss_pred             CCCccce--eeecCCeeeEEEcCCCCCeEEEEecC-----CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecC
Q 018293          198 STHSGFK--WAVAADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  270 (358)
Q Consensus       198 ~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  270 (358)
                      .+-....  .........+.+   ++.+++.|+.+     ..+.+||+.+..-       ..+..+.........+.+  
T Consensus       179 ~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~W-------~~~~~~p~~r~~~~~~~~--  246 (306)
T 3ii7_A          179 ETWTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLNEW-------KMVSPMPWKGVTVKCAAV--  246 (306)
T ss_dssp             TEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTTEE-------EECCCCSCCBSCCEEEEE--
T ss_pred             CeEEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCCcE-------EECCCCCCCccceeEEEE--
Confidence            5321110  001111122222   34467776543     4588899876521       111111111112223333  


Q ss_pred             CCCcEEEEEeCC-----CcEEEEecCCCCceee
Q 018293          271 LVPNLLATGSTD-----KMVKLWDLSNNQPSCI  298 (358)
Q Consensus       271 ~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~  298 (358)
                      ++ .+++.|+.+     ..+.+||+.+.+...+
T Consensus       247 ~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~  278 (306)
T 3ii7_A          247 GS-IVYVLAGFQGVGRLGHILEYNTETDKWVAN  278 (306)
T ss_dssp             TT-EEEEEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred             CC-EEEEEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence            34 777788754     4588899888764333

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.66  E-value=0.008  Score=49.30  Aligned_cols=185  Identities=10%  Similarity=0.067  Sum_probs=89.5

Q ss_pred             CcEEEEEEc----C-------CeEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeCC--------CcEEEE
Q 018293          135 RNILASASA----D-------KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD--------RSVVMK  193 (358)
Q Consensus       135 ~~~l~s~~~----d-------g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~  193 (358)
                      +.+++.|+.    +       ..+..||..+.+-..  .+....... +++.. ++ .+++.|+.+        ..+.+|
T Consensus        46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~  122 (315)
T 4asc_A           46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF-GLGEA-LN-SIYVVGGREIKDGERCLDSVMCY  122 (315)
T ss_dssp             CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC-EEEEE-TT-EEEEECCEESSTTCCBCCCEEEE
T ss_pred             CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce-eEEEE-CC-EEEEEeCCcCCCCCcccceEEEE
Confidence            457777774    1       127788988765322  111111111 12222 33 667777632        458888


Q ss_pred             EcccCCCccc--eeeecCCeeeEEEcCCCCCeEEEEec-C-----CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeE
Q 018293          194 DARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLE-D-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT  265 (358)
Q Consensus       194 d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~  265 (358)
                      |..+.+-...  ..........+.+   ++.+++.|+. +     ..+.+||..+..-       ..+..+.........
T Consensus       123 d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-------~~~~~~p~~r~~~~~  192 (315)
T 4asc_A          123 DRLSFKWGESDPLPYVVYGHTVLSH---MDLVYVIGGKGSDRKCLNKMCVYDPKKFEW-------KELAPMQTARSLFGA  192 (315)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCTTSCBCCCEEEEETTTTEE-------EECCCCSSCCBSCEE
T ss_pred             CCCCCcEeECCCCCCcccceeEEEE---CCEEEEEeCCCCCCcccceEEEEeCCCCeE-------EECCCCCCchhceEE
Confidence            8876531110  0011111122222   3446777765 2     4688899876521       111111111111122


Q ss_pred             EEecCCCCcEEEEEeCCC-----cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC------------
Q 018293          266 ISYNPLVPNLLATGSTDK-----MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG------------  328 (358)
Q Consensus       266 i~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------------  328 (358)
                      +.+  ++ .+++.|+.++     .+.+||+.+.+...+............+.+  +++ +++.|+.++            
T Consensus       193 ~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-l~v~GG~~~~~~~~~~~~~~~  266 (315)
T 4asc_A          193 TVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGT-LYAIGGFATLETESGELVPTE  266 (315)
T ss_dssp             EEE--TT-EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEEEEEEEEECTTSCEEEEE
T ss_pred             EEE--CC-EEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCE-EEEECCccccCcCCccccccc
Confidence            222  34 6777777654     488899988764443322222222222222  444 677777642            


Q ss_pred             --eEEEEEccCC
Q 018293          329 --KLEIWDTLSD  338 (358)
Q Consensus       329 --~i~vw~~~~~  338 (358)
                        .+.+||+.+.
T Consensus       267 ~~~v~~yd~~~~  278 (315)
T 4asc_A          267 LNDIWRYNEEEK  278 (315)
T ss_dssp             EEEEEEEETTTT
T ss_pred             cCcEEEecCCCC
Confidence              4778888764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.57  E-value=0.016  Score=48.19  Aligned_cols=141  Identities=11%  Similarity=0.081  Sum_probs=81.0

Q ss_pred             CCCcEEEEEcccCCCccceeee--------cCCeeeEEEcCC--CC-CeEEEEec--CCeEEEEEcccCCCCCCCCCCCc
Q 018293          186 FDRSVVMKDARISTHSGFKWAV--------AADVESLAWDPH--AE-HSFVVSLE--DGTIKGFDIRTAKSDPDSTSQQS  252 (358)
Q Consensus       186 ~dg~i~i~d~~~~~~~~~~~~~--------~~~i~~~~~~~~--~~-~~~~~~~~--dg~i~i~d~~~~~~~~~~~~~~~  252 (358)
                      .+|.|.++|..+..........        .-....+.+.++  +. +++++...  +..+.+|++......     ...
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~-----~~~  155 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS-----LLH  155 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE-----EEE
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCE-----EEE
Confidence            6899999998743222111111        124556666542  33 24444333  567888888764210     022


Q ss_pred             cEEEeec-CCceeEEEecCCCCcEEEEEe-----------------CCCcEEEEecCCCCceeeEecCCCCceeEEEEEc
Q 018293          253 SFTLHAH-DKAVCTISYNPLVPNLLATGS-----------------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS  314 (358)
Q Consensus       253 ~~~~~~~-~~~i~~i~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  314 (358)
                      +..+.+. -...+.+++.++| .+.++..                 ..|.|.-+|.  ++...+   ...-..-+.++|+
T Consensus       156 ~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~---~~~l~~pNGia~s  229 (355)
T 3sre_A          156 LKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVV---AEGFDFANGINIS  229 (355)
T ss_dssp             EEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEE---EEEESSEEEEEEC
T ss_pred             EeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEe---ecCCcccCcceEC
Confidence            2223222 2346889999988 6666543                 1244555554  332111   1112346789999


Q ss_pred             CCCCeEEEEEccCCeEEEEEccC
Q 018293          315 EDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       315 ~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ||++.++++-+..+.|..|++..
T Consensus       230 pDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          230 PDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCCCEEEEEeCCCCeEEEEEECC
Confidence            99998888778889999999864

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.56  E-value=0.026  Score=47.10  Aligned_cols=238  Identities=10%  Similarity=0.031  Sum_probs=121.2

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC---C
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---F  134 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~  134 (358)
                      .++|.|+|+++++- .+|.|++++.+ +.  .....                    .. ...........|+++|+   +
T Consensus        33 ~ia~~pdG~l~V~e-~~g~I~~~d~~-G~--~~~~~--------------------~~-v~~~g~~g~~gia~~pdf~~~   87 (354)
T 3a9g_A           33 SIAPLGGGRYLVTE-RPGRLVLISPS-GK--KLVAS--------------------FD-VANVGEAGLLGLALHPEFPKK   87 (354)
T ss_dssp             EEEEEETTEEEEEE-TTTEEEEECSS-CE--EEEEE--------------------CC-CCCSTTCSEEEEEECTTTTTS
T ss_pred             EEEEcCCCeEEEEe-CCCEEEEEeCC-Cc--eEeec--------------------cc-eeecCCCceeeEEeCCCCCcC
Confidence            33457899866654 45999888732 21  11100                    00 11122356889999997   4


Q ss_pred             CcEEEEEEc---C----CeEEEEECCCC--c-----ee-eeecc-cccceeeEEEcCCCCcEEEEEeC------------
Q 018293          135 RNILASASA---D----KQVKIWDVAAG--K-----CN-LTLEH-HTDKVQAVAWNHHSPQILLSGSF------------  186 (358)
Q Consensus       135 ~~~l~s~~~---d----g~v~iwd~~~~--~-----~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~~~------------  186 (358)
                      +.+.++-+.   +    +.|..|+....  .     .+ ..+.. .......+.|.|+| .++++.+.            
T Consensus        88 g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~  166 (354)
T 3a9g_A           88 SWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSS  166 (354)
T ss_dssp             CEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTC
T ss_pred             CEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCC
Confidence            555554442   3    56777876644  1     11 11221 11234679999999 66665432            


Q ss_pred             -CCcEEEEEcccCC-------CccceeeecCCeeeEEEcCCCCCeEEEEecCC---eEEEEEcccCCCCC---------C
Q 018293          187 -DRSVVMKDARIST-------HSGFKWAVAADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDP---------D  246 (358)
Q Consensus       187 -dg~i~i~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~~---------~  246 (358)
                       .|.|..++....-       .......--.....++|+|+.+.++++-...+   .|.+.  ..+....         .
T Consensus       167 ~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~  244 (354)
T 3a9g_A          167 LAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGR  244 (354)
T ss_dssp             CSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCC
T ss_pred             CCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCC
Confidence             2456655554320       01111111123567999995554555432221   23332  2221100         0


Q ss_pred             CCCCCccEEEeecCCceeEEEec-------CCCCcEEEEEeCCCcEEEEecCCC-CceeeEe-cCCCCceeEEEEEcCCC
Q 018293          247 STSQQSSFTLHAHDKAVCTISYN-------PLVPNLLATGSTDKMVKLWDLSNN-QPSCIAS-RNPKAGAVFSVAFSEDS  317 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~i~~i~~~-------~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~-~~~~~~~v~~~~~~~~~  317 (358)
                      .....+...+.........++|.       .++ .++++.-..+.|...++... +...... +......+..+++.|||
T Consensus       245 ~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG  323 (354)
T 3a9g_A          245 GEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG  323 (354)
T ss_dssp             TTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS
T ss_pred             CCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCC
Confidence            00012333331122356788884       344 67766666778888888753 2211122 22234578899999999


Q ss_pred             CeEEEEEc
Q 018293          318 PFVLAIGG  325 (358)
Q Consensus       318 ~~~l~~~~  325 (358)
                      . ++++..
T Consensus       324 ~-lyv~~~  330 (354)
T 3a9g_A          324 G-ILISTS  330 (354)
T ss_dssp             C-EEEEEC
T ss_pred             c-EEEEEe
Confidence            7 566553

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.49  E-value=0.035  Score=46.89  Aligned_cols=198  Identities=11%  Similarity=0.145  Sum_probs=124.9

Q ss_pred             ecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee-e
Q 018293          129 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-V  207 (358)
Q Consensus       129 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~  207 (358)
                      -.+|. .+.+|.-. ..++.|+|+++.+.+..+.- ...|.-=.|-.+.  .|+-.+ +..|+-|++.........+. +
T Consensus        72 IMnP~-~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           72 IMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EECSS-SSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT--EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             eeCCC-CcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC--eEEEEc-CCeeEEecccCCCCchhheecc
Confidence            35677 55565554 68999999999988887764 3456666776554  344444 56899999976443332322 2


Q ss_pred             ----cCCeeeEEEcCCCCCeEEEEe------cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC--CcE
Q 018293          208 ----AADVESLAWDPHAEHSFVVSL------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--PNL  275 (358)
Q Consensus       208 ----~~~i~~~~~~~~~~~~~~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~  275 (358)
                          ...|..-..+++..-++++|-      -.|.+.+|..+.          .....+.+|......+...-+.  ..+
T Consensus       146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er----------~~sQ~ieGhaa~F~~~~~~g~~~~~~l  215 (494)
T 1bpo_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR----------KVSQPIEGHAASFAQFKMEGNAEESTL  215 (494)
T ss_dssp             GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT----------CCEEEECCSEEEEEEEECTTCSSEEEE
T ss_pred             hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc----------cccchheeeeeeeEEEecCCCCCCceE
Confidence                245666677786554555542      347789999875          4566778887666555544211  123


Q ss_pred             EEEEeCC---CcEEEEecCCC---C-ce---eeE-ecC--CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          276 LATGSTD---KMVKLWDLSNN---Q-PS---CIA-SRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       276 l~~~~~d---g~i~i~d~~~~---~-~~---~~~-~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      ++-+...   +.++|-++...   . +.   .+. .+.  .......++..++... ++..-+.-|.|++||+.++.++.
T Consensus       216 f~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~  294 (494)
T 1bpo_A          216 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIY  294 (494)
T ss_dssp             EEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEecccceeee
Confidence            4434332   78999998543   1 11   010 111  1234456788888777 56677889999999999999886


Q ss_pred             c
Q 018293          343 N  343 (358)
Q Consensus       343 ~  343 (358)
                      +
T Consensus       295 ~  295 (494)
T 1bpo_A          295 M  295 (494)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.49  E-value=0.028  Score=45.80  Aligned_cols=148  Identities=13%  Similarity=0.144  Sum_probs=72.8

Q ss_pred             CcEEEEEEcC-----CeEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeCC-----CcEEEEEcccCCCcc
Q 018293          135 RNILASASAD-----KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARISTHSG  202 (358)
Q Consensus       135 ~~~l~s~~~d-----g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~  202 (358)
                      +.+++.|+.+     ..+.+||+.+.+-..  .+.........+.+  ++ .+++.|+.+     ..+.+||+.+.+-..
T Consensus       122 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          122 GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            4566666644     368899988764322  12111111122222  34 677777654     458888887653211


Q ss_pred             c--eeeecCCeeeEEEcCCCCCeEEEEecC-----CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcE
Q 018293          203 F--KWAVAADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  275 (358)
Q Consensus       203 ~--~~~~~~~i~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  275 (358)
                      .  .........++.+   ++.+++.|+.+     ..+.+||+.+..-       ..+..+....... +++.. ++ .+
T Consensus       199 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-------~~~~~~p~~r~~~-~~~~~-~~-~i  265 (308)
T 1zgk_A          199 ITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETW-------TFVAPMKHRRSAL-GITVH-QG-RI  265 (308)
T ss_dssp             CCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEE-------EECCCCSSCCBSC-EEEEE-TT-EE
T ss_pred             CCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcE-------EECCCCCCCccce-EEEEE-CC-EE
Confidence            0  0011111222333   34577777654     4688999876521       1111111111111 22222 33 67


Q ss_pred             EEEEeCC-----CcEEEEecCCCCceee
Q 018293          276 LATGSTD-----KMVKLWDLSNNQPSCI  298 (358)
Q Consensus       276 l~~~~~d-----g~i~i~d~~~~~~~~~  298 (358)
                      ++.|+.+     ..+.+||+.+.+...+
T Consensus       266 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~  293 (308)
T 1zgk_A          266 YVLGGYDGHTFLDSVECYDPDTDTWSEV  293 (308)
T ss_dssp             EEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred             EEEcCcCCCcccceEEEEcCCCCEEeec
Confidence            7777654     3477888887764333

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.43  E-value=0.1  Score=50.80  Aligned_cols=208  Identities=14%  Similarity=0.126  Sum_probs=99.6

Q ss_pred             EEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCC-CCeEEEEEcccccCcCceeecCCccccc
Q 018293           23 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEK  101 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~  101 (358)
                      ++..++..++   .+.......++..+.|+...+.. .-...++++|+|.. |++|+|+++++.+......+..      
T Consensus       533 ~l~~fel~~~---~L~~~~~~~l~~evscl~i~~~~-~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~------  602 (1158)
T 3ei3_A          533 ALYYLQIHPQ---ELRQISHTEMEHEVACLDITPLG-DSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG------  602 (1158)
T ss_dssp             EEEEEEEETT---EEEEEEEEECSSCEEEEECCCCS-SSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS------
T ss_pred             EEEEEEeeCC---ceeeecccCCCCceEEEEeecCC-CCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC------
Confidence            4445554433   23333334455566677653310 00113579999996 9999999997543322111100      


Q ss_pred             ccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECC--CCceeee--ecccccceeeEEEcCCC
Q 018293          102 KKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA--AGKCNLT--LEHHTDKVQAVAWNHHS  177 (358)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~--~~~~~~~v~~~~~~~~~  177 (358)
                                       ..-...|.-+.+.  +..+|..|-.||.+.-+.+.  +++....  ..-...++.-..+...+
T Consensus       603 -----------------~~~p~si~l~~~~--~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~  663 (1158)
T 3ei3_A          603 -----------------EIIPRSILMTTFE--SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLS  663 (1158)
T ss_dssp             -----------------SCCEEEEEEEEET--TEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSS
T ss_pred             -----------------CCCCcEEEEEEeC--CCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCC
Confidence                             0011223333442  35688899999988666553  4443221  11123455544454444


Q ss_pred             CcEEEEEeCCCcEEEEEcccCCCccceeee-cCCe-eeEEEcCCC-CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccE
Q 018293          178 PQILLSGSFDRSVVMKDARISTHSGFKWAV-AADV-ESLAWDPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF  254 (358)
Q Consensus       178 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i-~~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  254 (358)
                      ...+++.+ +....++--+ ++ .. .... ...+ ....|+... +.-++.. .++.++|..+.....       -...
T Consensus       664 ~~~V~a~s-~rp~liy~~~-~~-l~-~s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~-------~~~~  731 (1158)
T 3ei3_A          664 TTNVFACS-DRPTVIYSSN-HK-LV-FSNVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQK-------LHIR  731 (1158)
T ss_dssp             CEEEEEES-SSCEEEEESS-SS-EE-EEEBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSS-------EEEE
T ss_pred             ceeEEEEC-CCCEEEEEcC-Cc-eE-EeccChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCC-------eeEE
Confidence            23333333 4444444332 11 11 1111 1223 233454322 2334443 355699988865411       2222


Q ss_pred             EEeecCCceeEEEecCCC
Q 018293          255 TLHAHDKAVCTISYNPLV  272 (358)
Q Consensus       255 ~~~~~~~~i~~i~~~~~~  272 (358)
                      .+.- ...+..++++|..
T Consensus       732 ~ipL-~~Tprri~y~~~~  748 (1158)
T 3ei3_A          732 TVPL-YESPRKICYQEVS  748 (1158)
T ss_dssp             EEEC-SSEEEEEEEEGGG
T ss_pred             EEeC-CCCceEEEEcCCC
Confidence            2322 3456778888765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.40  E-value=0.014  Score=49.08  Aligned_cols=149  Identities=15%  Similarity=0.185  Sum_probs=92.5

Q ss_pred             cEEEEEEcCCeEEEEECCCCceeeeeccc----ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc--------
Q 018293          136 NILASASADKQVKIWDVAAGKCNLTLEHH----TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--------  203 (358)
Q Consensus       136 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------  203 (358)
                      ..++.+ .++.||.-++......+.+...    -..+..+..+|+| .+|+..+ +..|.+..+-.+.....        
T Consensus        33 t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~  109 (452)
T 3pbp_A           33 TRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAF  109 (452)
T ss_dssp             TEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred             CEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCccccccccc
Confidence            344443 3578888888754434444322    2257889999999 7777665 55788877763221110        


Q ss_pred             ---eee-------ecCCeeeEEEcCCCC--CeEEEEecCCeEEEEEcccCCCCCC-CCCCCccEEEeecCCceeEEEecC
Q 018293          204 ---KWA-------VAADVESLAWDPHAE--HSFVVSLEDGTIKGFDIRTAKSDPD-STSQQSSFTLHAHDKAVCTISYNP  270 (358)
Q Consensus       204 ---~~~-------~~~~i~~~~~~~~~~--~~~~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~~~  270 (358)
                         ...       ...+|..+.|+|-+.  ..+++-..|+.|++||+......+. .......+.+......|.+++|.+
T Consensus       110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~  189 (452)
T 3pbp_A          110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK  189 (452)
T ss_dssp             EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred             ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence               111       246799999999643  3899999999999999997432111 000011122223346789999999


Q ss_pred             CCCcEEEEEe--CCCcEEEE
Q 018293          271 LVPNLLATGS--TDKMVKLW  288 (358)
Q Consensus       271 ~~~~~l~~~~--~dg~i~i~  288 (358)
                      ++ -.|+..+  ..|.|+-.
T Consensus       190 ~~-lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          190 DG-LTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             TS-SCEEEEECTTSCEEEEE
T ss_pred             CC-cEEEEEecCCCCCEEEE
Confidence            65 7676655  77877654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.37  E-value=0.047  Score=45.36  Aligned_cols=185  Identities=6%  Similarity=-0.041  Sum_probs=101.4

Q ss_pred             cEEEEecCCCCCcEEEEEE-------------cCCeEEEEECCCC--cee-eeecc-----cccceeeEEEcC--CCCcE
Q 018293          124 SVLGLAWNKEFRNILASAS-------------ADKQVKIWDVAAG--KCN-LTLEH-----HTDKVQAVAWNH--HSPQI  180 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~-------------~dg~v~iwd~~~~--~~~-~~~~~-----~~~~v~~~~~~~--~~~~~  180 (358)
                      ..-.+...|+ + ++++++             .+|.|.++|.++.  +.. ..+.+     ..-....+.+.+  ++...
T Consensus        51 G~EDi~~~~~-G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~  128 (355)
T 3sre_A           51 GSEDLEILPN-G-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY  128 (355)
T ss_dssp             CCCEEEECTT-S-EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred             CcceeEEcCC-C-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence            3445566777 5 344444             6899999998742  211 12222     223566777755  34224


Q ss_pred             EEEEe-C--CCcEEEEEcccCCCcccee-ee----cCCeeeEEEcCCCCCeEEEEe-----------------cCCeEEE
Q 018293          181 LLSGS-F--DRSVVMKDARISTHSGFKW-AV----AADVESLAWDPHAEHSFVVSL-----------------EDGTIKG  235 (358)
Q Consensus       181 l~~~~-~--dg~i~i~d~~~~~~~~~~~-~~----~~~i~~~~~~~~~~~~~~~~~-----------------~dg~i~i  235 (358)
                      |+++. .  +..+.+|++.......... ..    -...+.+.+.+++. ++++..                 ..|.|.-
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEE
Confidence            44443 2  4678888876543322111 11    23467888888543 444432                 1244544


Q ss_pred             EEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC-CCceeeEecCCCCceeEEEEEc
Q 018293          236 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFS  314 (358)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~  314 (358)
                      +|.  +         . ...+...-...+.++|+||+..+.++-+..+.|..|++.. +.......+ ...+..-.+++.
T Consensus       208 ~d~--~---------~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD  274 (355)
T 3sre_A          208 YSP--N---------D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVD  274 (355)
T ss_dssp             ECT--T---------C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEEC
T ss_pred             EEC--C---------e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEe
Confidence            443  2         1 1122222344689999999844555556678899999864 332222222 224567788999


Q ss_pred             C-CCCeEEEEEc
Q 018293          315 E-DSPFVLAIGG  325 (358)
Q Consensus       315 ~-~~~~~l~~~~  325 (358)
                      + +|. +.+++.
T Consensus       275 ~e~G~-lwva~~  285 (355)
T 3sre_A          275 PVTGD-LWVGCH  285 (355)
T ss_dssp             TTTCC-EEEEEE
T ss_pred             CCCCc-EEEEec
Confidence            9 588 455444

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.35  E-value=0.047  Score=45.00  Aligned_cols=196  Identities=8%  Similarity=0.049  Sum_probs=98.0

Q ss_pred             cccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeec---ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc-
Q 018293          122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE---HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-  197 (358)
Q Consensus       122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-  197 (358)
                      ...+.++.+.+.  ..++ ++.++.|.. ....++.-....   .+...+..+.+.+++ ..+++ +.+|.|..  ... 
T Consensus        79 ~~~~~~i~~~~~--~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~-~~~g~v~~--S~Dg  150 (327)
T 2xbg_A           79 DYRFNSVSFQGN--EGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNG-SAEMI-TNVGAIYR--TKDS  150 (327)
T ss_dssp             CCEEEEEEEETT--EEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETT-EEEEE-ETTCCEEE--ESST
T ss_pred             CccEEEEEecCC--eEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCC-CEEEE-eCCccEEE--EcCC
Confidence            446888888763  3444 456665443 323333222221   233456777777665 55544 45665432  222 


Q ss_pred             CCCcc-ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEE-EEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcE
Q 018293          198 STHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG-FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  275 (358)
Q Consensus       198 ~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  275 (358)
                      ++.-. ........+..+.+.++ +.+++++ .+|.+.. .|-. +..      ...+  -......+..+.+.+++ .+
T Consensus       151 G~tW~~~~~~~~~~~~~~~~~~~-~~~~~~g-~~G~~~~S~d~g-G~t------W~~~--~~~~~~~~~~~~~~~~g-~~  218 (327)
T 2xbg_A          151 GKNWQALVQEAIGVMRNLNRSPS-GEYVAVS-SRGSFYSTWEPG-QTA------WEPH--NRTTSRRLHNMGFTPDG-RL  218 (327)
T ss_dssp             TSSEEEEECSCCCCEEEEEECTT-SCEEEEE-TTSSEEEEECTT-CSS------CEEE--ECCSSSCEEEEEECTTS-CE
T ss_pred             CCCCEEeecCCCcceEEEEEcCC-CcEEEEE-CCCcEEEEeCCC-CCc------eeEC--CCCCCCccceeEECCCC-CE
Confidence            22111 11123346788999884 4455555 4555443 2321 100      0111  12334567889998877 54


Q ss_pred             EEEEeCCCcEEEEecCCCCceeeEecC--CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          276 LATGSTDKMVKLWDLSNNQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       276 l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      + ..+.+|.+++.+...++........  .....+.++.+.+++. +++++ .+|.| ++....++..
T Consensus       219 ~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g-~~g~i-~~S~DgG~tW  282 (327)
T 2xbg_A          219 W-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE-VWLAG-GAGAL-LCSQDGGQTW  282 (327)
T ss_dssp             E-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC-EEEEE-STTCE-EEESSTTSSC
T ss_pred             E-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE-EEEEe-CCCeE-EEeCCCCccc
Confidence            4 4556788777642222210111111  1223588899998877 56654 46766 3444444443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.31  E-value=0.047  Score=44.27  Aligned_cols=145  Identities=11%  Similarity=0.105  Sum_probs=71.2

Q ss_pred             CcEEEEEEcCC-----eEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeCC-------CcEEEEEcccCCC
Q 018293          135 RNILASASADK-----QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD-------RSVVMKDARISTH  200 (358)
Q Consensus       135 ~~~l~s~~~dg-----~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~  200 (358)
                      +.+++.|+.++     .+.+||+.+.+-..  .+.........+.+  ++ .+++.|+.+       ..+.+||+.+.+-
T Consensus       109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GG-LLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CC-EEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            45777777653     57889988764322  22111111112222  34 666666543       3578888876532


Q ss_pred             ccc--eeeecCCeeeEEEcCCCCCeEEEEecC-----CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC
Q 018293          201 SGF--KWAVAADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  273 (358)
Q Consensus       201 ~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  273 (358)
                      ...  ..........+.+   ++.+++.|+.+     ..+.+||+.+..-       ..+..+....... +++.. ++ 
T Consensus       186 ~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-------~~~~~~~~~r~~~-~~~~~-~~-  252 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNAW-------RQVADMNMCRRNA-GVCAV-NG-  252 (302)
T ss_dssp             EEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTEE-------EEECCCSSCCBSC-EEEEE-TT-
T ss_pred             EECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCCE-------eeCCCCCCccccC-eEEEE-CC-
Confidence            111  0001111222222   34577777654     3688999876421       1111111111111 12222 34 


Q ss_pred             cEEEEEeCCC-----cEEEEecCCCCc
Q 018293          274 NLLATGSTDK-----MVKLWDLSNNQP  295 (358)
Q Consensus       274 ~~l~~~~~dg-----~i~i~d~~~~~~  295 (358)
                      .+++.|+.++     .+.+||+.+.+.
T Consensus       253 ~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          253 LLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             EEEEECCcCCCcccccEEEEcCCCCeE
Confidence            6777777653     488999887753

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.26  E-value=0.061  Score=44.47  Aligned_cols=239  Identities=12%  Similarity=0.078  Sum_probs=123.5

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCC---C
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---F  134 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~  134 (358)
                      .++|.|+|+++++-...|.|++++...+.. .....                    ..............|+++|+   +
T Consensus        36 ~ia~~pdG~llVter~~G~I~~v~~~~g~~-~~v~~--------------------~~~v~~~g~~GllGia~~Pdf~~~   94 (347)
T 3das_A           36 GLAPLPGGDLLVSSRDEATITRVDAKTGRK-TELGE--------------------VPGVSPSGEGGLLGIALSPDYASD   94 (347)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEE--------------------CTTCCCBTTBSEEEEEECTTHHHH
T ss_pred             EEEEcCCCcEEEEEecCCEEEEEECCCCcE-eeecc--------------------cCceeecCCCCceeeEeccccccC
Confidence            445589999888876689999887543221 10000                    00112234567899999995   2


Q ss_pred             CcEEEEEE--cCCeEEEEECCCC----------cee-eeec-ccccceeeEEEcCCCCcEEEEEeC-------------C
Q 018293          135 RNILASAS--ADKQVKIWDVAAG----------KCN-LTLE-HHTDKVQAVAWNHHSPQILLSGSF-------------D  187 (358)
Q Consensus       135 ~~~l~s~~--~dg~v~iwd~~~~----------~~~-~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------d  187 (358)
                      +.+.++-+  .++.|.-|.+..+          +.+ ..+. ........|.|.|+| .++++.+.             .
T Consensus        95 g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~  173 (347)
T 3das_A           95 HMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLG  173 (347)
T ss_dssp             CEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCST
T ss_pred             CEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCC
Confidence            43333322  3455666665542          111 1121 112234679999999 66666442             3


Q ss_pred             CcEEEEEcccC--------CCccceeeecCCeeeEEEcCCCCCeEEEE-ecCCeEEEEEcccCCCCC---------CCCC
Q 018293          188 RSVVMKDARIS--------THSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSDP---------DSTS  249 (358)
Q Consensus       188 g~i~i~d~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~dg~i~i~d~~~~~~~~---------~~~~  249 (358)
                      |.|.-.+....        .......++ .....++|+|+ +.++++= +.++.=.+.-+..+....         ....
T Consensus       174 G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~-G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~  251 (347)
T 3das_A          174 GKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDK-QRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGF  251 (347)
T ss_dssp             TCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTT-CCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTC
T ss_pred             CEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEECCC-CCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccc
Confidence            55555555432        000111122 23567899995 4344432 223323333333332210         0111


Q ss_pred             CCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc--eeeEecCCCCceeEEEEEcCCCCeEEEE
Q 018293          250 QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIASRNPKAGAVFSVAFSEDSPFVLAI  323 (358)
Q Consensus       250 ~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~  323 (358)
                      ..++..+..+......++|.. + .++...-..+.|....+.....  .....+.+..+.+..++..|||. ++++
T Consensus       252 ~~P~~~~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~-lyv~  324 (347)
T 3das_A          252 HDPVAQWSTDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDK-LWLV  324 (347)
T ss_dssp             CCCSEEECTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTE-EEEE
T ss_pred             cCCcEecCCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCc-EEEE
Confidence            234444444334567888874 3 5666665666677677655431  11223344456799999999998 4444

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.20  E-value=0.057  Score=44.20  Aligned_cols=185  Identities=9%  Similarity=0.065  Sum_probs=86.9

Q ss_pred             CcEEEEEEc----CC-------eEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeCC-------CcEEEEE
Q 018293          135 RNILASASA----DK-------QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD-------RSVVMKD  194 (358)
Q Consensus       135 ~~~l~s~~~----dg-------~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~i~d  194 (358)
                      +.+++.|+.    ++       .+..||..+.+-..  .+.........+.+  ++ .+++.|+.+       ..+.+||
T Consensus        57 ~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd  133 (318)
T 2woz_A           57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DD-KIYVVAGKDLQTEASLDSVLCYD  133 (318)
T ss_dssp             SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TT-EEEEEEEEBTTTCCEEEEEEEEE
T ss_pred             CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CC-EEEEEcCccCCCCcccceEEEEe
Confidence            457777763    12       27788887765322  12111111112222  34 677777754       3477788


Q ss_pred             cccCCCccc--eeeecCCeeeEEEcCCCCCeEEEEec------CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEE
Q 018293          195 ARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI  266 (358)
Q Consensus       195 ~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  266 (358)
                      ..+.+-...  ..........+..   ++.+++.|+.      -..+.+||+.+..-       ..+..+...... .++
T Consensus       134 ~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-------~~~~~~p~~r~~-~~~  202 (318)
T 2woz_A          134 PVAAKWSEVKNLPIKVYGHNVISH---NGMIYCLGGKTDDKKCTNRVFIYNPKKGDW-------KDLAPMKTPRSM-FGV  202 (318)
T ss_dssp             TTTTEEEEECCCSSCEESCEEEEE---TTEEEEECCEESSSCBCCCEEEEETTTTEE-------EEECCCSSCCBS-CEE
T ss_pred             CCCCCEeECCCCCCcccccEEEEE---CCEEEEEcCCCCCCCccceEEEEcCCCCEE-------EECCCCCCCccc-ceE
Confidence            765432110  0000011112222   3446666653      23588899876521       111111111111 122


Q ss_pred             EecCCCCcEEEEEeCC-----CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC--------------
Q 018293          267 SYNPLVPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK--------------  327 (358)
Q Consensus       267 ~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------------  327 (358)
                      +.. ++ .+++.|+.+     ..+.+||+.+.+...+........... ++. -+++ +++.|+.+              
T Consensus       203 ~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~-~~~~-i~v~GG~~~~~~~~~~~~~~~~  277 (318)
T 2woz_A          203 AIH-KG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSIS-LVS-LAGS-LYAIGGFAMIQLESKEFAPTEV  277 (318)
T ss_dssp             EEE-TT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCE-EEE-ETTE-EEEECCBCCBC----CCBCCBC
T ss_pred             EEE-CC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceE-EEE-ECCE-EEEECCeeccCCCCceecccee
Confidence            222 33 677777653     347789998876443332222222122 222 2444 67777754              


Q ss_pred             CeEEEEEccCC
Q 018293          328 GKLEIWDTLSD  338 (358)
Q Consensus       328 g~i~vw~~~~~  338 (358)
                      ..+.+||+.+.
T Consensus       278 ~~v~~yd~~~~  288 (318)
T 2woz_A          278 NDIWKYEDDKK  288 (318)
T ss_dssp             CCEEEEETTTT
T ss_pred             eeEEEEeCCCC
Confidence            35788888764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.16  E-value=0.21  Score=48.68  Aligned_cols=176  Identities=11%  Similarity=0.050  Sum_probs=105.3

Q ss_pred             CeEEEEECCCCceeeeecc-cccceeeEE---EcCCCCcEEEEEe----------CCCcEEEEEcccCCCcc-ceeeecC
Q 018293          145 KQVKIWDVAAGKCNLTLEH-HTDKVQAVA---WNHHSPQILLSGS----------FDRSVVMKDARISTHSG-FKWAVAA  209 (358)
Q Consensus       145 g~v~iwd~~~~~~~~~~~~-~~~~v~~~~---~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~-~~~~~~~  209 (358)
                      +.|++.|..+.+.+..+.- ....+.+++   |..+...++++|+          ..|.|.+|++...+... ......+
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g  886 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence            4588888888877655532 223344444   4444346788776          35889999997432211 1234567


Q ss_pred             CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 018293          210 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  289 (358)
Q Consensus       210 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d  289 (358)
                      ++++++--.  + ++++| ....|++|++...         +.+..-..+-..+..+.....+ ++++.|..-..|.++.
T Consensus       887 ~v~al~~~~--g-~Lla~-ig~~l~vy~l~~~---------~~L~~~~~~~~~i~~~~l~~~~-~~I~vgD~~~Sv~~~~  952 (1158)
T 3ei3_A          887 AVYSMVEFN--G-KLLAS-INSTVRLYEWTTE---------KELRTECNHYNNIMALYLKTKG-DFILVGDLMRSVLLLA  952 (1158)
T ss_dssp             CEEEEEEET--T-EEEEE-ETTEEEEEEECTT---------SCEEEEEEECCCSCEEEEEEET-TEEEEEESSBCEEEEE
T ss_pred             cCEEEeeeC--C-EEEEE-cCCEEEEEECCCC---------ceEEEEeeccccEEEEEEeccC-CEEEEEEhhheEEEEE
Confidence            788877543  3 45554 4578999999765         2222111111123322222234 7888888877777754


Q ss_pred             c--CCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          290 L--SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       290 ~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      .  ..++. .......+...++++.|-.++.  ++.+..+|.|.+.....
T Consensus       953 y~~~~~~L-~~~a~D~~~~~vta~~~ld~~t--~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          953 YKPMEGNF-EEIARDFNPNWMSAVEILDDDN--FLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EETTTTEE-EEEEECCSCBCEEEEEEEETTE--EEEEETTSEEEEEEECT
T ss_pred             EEcCCCeE-EEEEeecccccEEEEEEEccCc--EEEEcCCCcEEEEecCC
Confidence            4  33432 2233344566788999887663  56688999999988765

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.06  E-value=0.11  Score=43.91  Aligned_cols=241  Identities=13%  Similarity=0.181  Sum_probs=140.2

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      +|..+.+|.=. ...+.|+|+++...+....                            ....|.-=.|-.+  +.|+-.
T Consensus        74 nP~~~iiALra-g~~lQiFnle~K~klks~~----------------------------~~e~VvfWkWis~--~~l~lV  122 (494)
T 1bpo_A           74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHT----------------------------MTDDVTFWKWISL--NTVALV  122 (494)
T ss_dssp             CSSSSCEEEEE-TTEEEEEETTTTEEEEEEE----------------------------CSSCCCEEEEEET--TEEEEE
T ss_pred             CCCCcEEEEec-CCeEEEEchHHhhhhccee----------------------------cCCCceEEEecCC--CeEEEE
Confidence            78888887665 6799999998644333211                            1245555566544  245444


Q ss_pred             EcCCeEEEEECCCC-ceeeeecccc----cceeeEEEcCCCCcEEEEEe------CCCcEEEEEcccCCCccceeeecCC
Q 018293          142 SADKQVKIWDVAAG-KCNLTLEHHT----DKVQAVAWNHHSPQILLSGS------FDRSVVMKDARISTHSGFKWAVAAD  210 (358)
Q Consensus       142 ~~dg~v~iwd~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~  210 (358)
                      + +..|.-|+++.. .+.+.+..|.    ..|.....+++..-++++|-      -.|.+.+|..+...... ..+|...
T Consensus       123 T-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~-ieGhaa~  200 (494)
T 1bpo_A          123 T-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IEGHAAS  200 (494)
T ss_dssp             C-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE-ECCSEEE
T ss_pred             c-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch-heeeeee
Confidence            3 468999999743 4555555443    45666777888743444442      24678888877654322 3333333


Q ss_pred             eeeEEEcCC--CCCeEEEEec---CCeEEEEEcccCC-CCCCCCCCCccEEE----eecCCceeEEEecCCCCcEEEEEe
Q 018293          211 VESLAWDPH--AEHSFVVSLE---DGTIKGFDIRTAK-SDPDSTSQQSSFTL----HAHDKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       211 i~~~~~~~~--~~~~~~~~~~---dg~i~i~d~~~~~-~~~~~~~~~~~~~~----~~~~~~i~~i~~~~~~~~~l~~~~  280 (358)
                      ...+.+..+  ...+++-+..   .+.+.+.++.... ...  ...+....+    .....-..++..++.. ..++.-+
T Consensus       201 F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~--~f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviT  277 (494)
T 1bpo_A          201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ--PFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLIT  277 (494)
T ss_dssp             EEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC--CCCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEE
T ss_pred             eEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC--CccceeeeeeCCcccccCceeEEEecccC-CEEEEEe
Confidence            333333211  1123333322   3789999986541 111  111111111    1113345678888876 6888889


Q ss_pred             CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          281 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       281 ~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      .-|.+.+||+.++..+....+  ...+|...+-.....- +++....|.|.--.+.....+
T Consensus       278 K~G~i~lyDleTgt~i~~nrI--s~~~iF~t~~~~~~~G-i~~Vnr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          278 KYGYIHLYDLETGTCIYMNRI--SGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEENII  335 (494)
T ss_dssp             TTSEEEEEETTTCCEEEEEEC--CSSCEEEEEEETTTTE-EEEEETTCEEEEEEECTTTHH
T ss_pred             cCceEEEEecccceeeeeecc--cCCceEEecccCCCCc-EEEEccCceEEEEEEccccch
Confidence            999999999999985444443  3456666666555554 445668888887777665544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.05  E-value=0.038  Score=46.11  Aligned_cols=56  Identities=11%  Similarity=0.031  Sum_probs=30.3

Q ss_pred             cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC------eEEEEEccCCCccc
Q 018293          284 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG------KLEIWDTLSDAGIS  342 (358)
Q Consensus       284 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~vw~~~~~~~~~  342 (358)
                      .+.+||+.+.+...+..+......-.++  .-+++ +++.|+.++      .|.++++.+++.+.
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~-i~v~GG~~~~~~~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNS-LLIIGGETAGGKAVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEE--EETTE-EEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeE--EeCCE-EEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence            4789999988765554444332222222  23555 677788553      46667888777554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.91  E-value=0.13  Score=42.03  Aligned_cols=101  Identities=11%  Similarity=0.052  Sum_probs=51.9

Q ss_pred             CcEEEEEEcC--------CeEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeC-C-----CcEEEEEcccC
Q 018293          135 RNILASASAD--------KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSF-D-----RSVVMKDARIS  198 (358)
Q Consensus       135 ~~~l~s~~~d--------g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~  198 (358)
                      +.+++.|+.+        ..+.+||..+.+-..  .+....... +++. -++ .+++.|+. +     ..+.+||+.+.
T Consensus        99 ~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           99 NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLS-HMD-LVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETT-EEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEE-ECC-EEEEEeCCCCCCcccceEEEEeCCCC
Confidence            4566777643        458999998764322  221111111 2222 234 67777765 2     46888888765


Q ss_pred             CCccc--eeeecCCeeeEEEcCCCCCeEEEEecCC-----eEEEEEcccC
Q 018293          199 THSGF--KWAVAADVESLAWDPHAEHSFVVSLEDG-----TIKGFDIRTA  241 (358)
Q Consensus       199 ~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~dg-----~i~i~d~~~~  241 (358)
                      +-...  .........++.+   ++.+++.|+.++     .+.+||+.+.
T Consensus       176 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          176 EWKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             EEEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             eEEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCC
Confidence            32111  0011111222222   345777777654     5788888764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.88  E-value=0.39  Score=47.22  Aligned_cols=242  Identities=12%  Similarity=0.165  Sum_probs=133.9

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      +|..+.+|.=. ..++.|+|+++...+....                            ....|.-=.|-.. . .|+-.
T Consensus        74 nP~~~iiALra-g~~lQiFnl~~k~klks~~----------------------------~~e~VvfWkWis~-~-~l~lV  122 (1630)
T 1xi4_A           74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHT----------------------------MTDDVTFWKWISL-N-TVALV  122 (1630)
T ss_pred             CCCcceEEEec-CCeEEEeehHHhhhhcccc----------------------------cCCCceEEEecCC-C-eeEEE
Confidence            78888777665 6899999998655443211                            2345666677655 2 44443


Q ss_pred             EcCCeEEEEECCCC-ceeeeeccc----ccceeeEEEcCCCCcEEEEEe------CCCcEEEEEcccCCCccceeeecCC
Q 018293          142 SADKQVKIWDVAAG-KCNLTLEHH----TDKVQAVAWNHHSPQILLSGS------FDRSVVMKDARISTHSGFKWAVAAD  210 (358)
Q Consensus       142 ~~dg~v~iwd~~~~-~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~  210 (358)
                      + +..|.-|++... .+.+.+..|    ...|..-..+++..-.+++|-      -.|.+.+|..+...... ..+|.+.
T Consensus       123 T-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~-iegha~~  200 (1630)
T 1xi4_A          123 T-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IEGHAAS  200 (1630)
T ss_pred             c-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh-hhHhHhh
Confidence            3 467999999743 455555444    345666677777733444442      35788899887654332 2333333


Q ss_pred             eeeEEEc--CCCCCeEEEEe---cCCeEEEEEcccC-CCCCCCCCCCccEE-E--eecCCceeEEEecCCCCcEEEEEeC
Q 018293          211 VESLAWD--PHAEHSFVVSL---EDGTIKGFDIRTA-KSDPDSTSQQSSFT-L--HAHDKAVCTISYNPLVPNLLATGST  281 (358)
Q Consensus       211 i~~~~~~--~~~~~~~~~~~---~dg~i~i~d~~~~-~~~~~~~~~~~~~~-~--~~~~~~i~~i~~~~~~~~~l~~~~~  281 (358)
                      ...+...  +....+++.+.   ..+.+.+-++... ........ +.+.. +  .....-..++..++.. .++..-+.
T Consensus       201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~k-k~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk  278 (1630)
T 1xi4_A          201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK-KAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITK  278 (1630)
T ss_pred             hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcc-ccccccCCcccccCcceEEEecccc-CEEEEEec
Confidence            3222221  11122222221   1368999988654 11111110 11111 1  1112334567788766 67888889


Q ss_pred             CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          282 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       282 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      -|.+.+||+.++..+....+  ...+|...+-...... +++....|.|.--.+.....+
T Consensus       279 ~G~~~~~d~~t~~~i~~~ri--s~~~iF~~~~~~~~~g-~~~vnr~G~vl~v~v~~~~iv  335 (1630)
T 1xi4_A          279 YGYIHLYDLETGTCIYMNRI--SGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEENII  335 (1630)
T ss_pred             CceEEEEecccchhhhhccc--cCCceEEeccCCCCCc-eEEEcCCceEEEEEEccchhh
Confidence            99999999999985433333  3344554444443332 334556777666666554433

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.70  E-value=0.21  Score=41.53  Aligned_cols=61  Identities=13%  Similarity=0.040  Sum_probs=27.9

Q ss_pred             eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC------cEEEEecCCCCceeeEecC
Q 018293          232 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK------MVKLWDLSNNQPSCIASRN  302 (358)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~  302 (358)
                      .+.+||+.+..-       ..+..+........++.+  ++ .+++.|+.++      .+.++++++++......+.
T Consensus       286 ~~~~yd~~~~~W-------~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~  352 (357)
T 2uvk_A          286 STDIHLWHNGKW-------DKSGELSQGRAYGVSLPW--NN-SLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH  352 (357)
T ss_dssp             CCEEEECC---C-------EEEEECSSCCBSSEEEEE--TT-EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred             eEEEEecCCCce-------eeCCCCCCCcccceeEEe--CC-EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence            477888876521       222222222222222222  34 7777787653      3666788888754443333

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.61  E-value=0.24  Score=41.18  Aligned_cols=206  Identities=12%  Similarity=0.079  Sum_probs=104.9

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce--eeeec---ccccceeeEEEcCC---CCcEEEEEeCC-----Cc
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC--NLTLE---HHTDKVQAVAWNHH---SPQILLSGSFD-----RS  189 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~~l~~~~~d-----g~  189 (358)
                      .....++|.|++ .++ .+..+|.|.+++  +++.  +..+.   ........++++|+   +..++++-...     +.
T Consensus        31 ~~P~~ia~~pdG-~l~-V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           31 EVPWALAFLPDG-GML-IAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             SCEEEEEECTTS-CEE-EEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCceEEEEcCCC-eEE-EEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            346799999994 444 456779999998  4432  22111   12356789999998   42444444432     67


Q ss_pred             EEEEEcccCCCc---cceeeec------CCeeeEEEcCCCCCeEEEEec-------------CCeEEEEEcccCCCCCCC
Q 018293          190 VVMKDARISTHS---GFKWAVA------ADVESLAWDPHAEHSFVVSLE-------------DGTIKGFDIRTAKSDPDS  247 (358)
Q Consensus       190 i~i~d~~~~~~~---~~~~~~~------~~i~~~~~~~~~~~~~~~~~~-------------dg~i~i~d~~~~~~~~~~  247 (358)
                      |..++.......   .......      .....++|.|++ .++++.+.             .|.|.-++....-.....
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np  185 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP  185 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence            778877643110   1111111      234689999966 45554322             245665655431000000


Q ss_pred             C----CCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc--------EEEEecCCCC----------------ceeeE
Q 018293          248 T----SQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--------VKLWDLSNNQ----------------PSCIA  299 (358)
Q Consensus       248 ~----~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--------i~i~d~~~~~----------------~~~~~  299 (358)
                      .    ......-..++. ....++|+|+.+.++++-.....        |.+..  .+.                .....
T Consensus       186 f~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~  262 (352)
T 2ism_A          186 FLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPLY  262 (352)
T ss_dssp             TTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred             ccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCeE
Confidence            0    001111222333 35789999943365555433332        33332  221                01222


Q ss_pred             ecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          300 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       300 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      .+..| .....++| .+|. ++++.-..+.|...++....
T Consensus       263 ~~~~~-~ap~G~~~-~~G~-l~v~~~~~~~v~~v~~~~~~  299 (352)
T 2ism_A          263 FWPQG-FPPGNLAF-FRGD-LYVAGLRGQALLRLVLEGER  299 (352)
T ss_dssp             ECTTC-CCEEEEEE-ETTE-EEEEETTTTEEEEEEEEEET
T ss_pred             ecCCC-CCCcceEE-ECCE-EEEEECCCCEEEEEEECCCC
Confidence            33223 23556777 4565 56666667788888776543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.55  E-value=0.29  Score=41.34  Aligned_cols=143  Identities=12%  Similarity=0.145  Sum_probs=84.7

Q ss_pred             CCcEEEEEcccCCCccceeee-----cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCC-C--CCCccEEEee
Q 018293          187 DRSVVMKDARISTHSGFKWAV-----AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS-T--SQQSSFTLHA  258 (358)
Q Consensus       187 dg~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~-~--~~~~~~~~~~  258 (358)
                      ++.||.-++....... ....     ...+..+..+|++ .+++.. .+..|.|-.+..+...... .  .....+.+.-
T Consensus        40 ~n~iR~~~i~~~~~Yk-~L~~~~~i~f~~i~qlvlSpsG-~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l  116 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYH-SLNFSRHLVLDDTFHVISSTSG-DLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI  116 (452)
T ss_dssp             TTEEEEEETTTCSSCE-EEECTTTCCCCTTCEEEECTTS-SEEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred             CCEEEEEECCCCCcce-EEecCcccccCceeEEEECCCC-CEEEEe-cCCeEEEEEecCccccCcccccccccceeEEEc
Confidence            4667766766433222 2222     2257889999955 466655 4568999998844222110 0  0011222222


Q ss_pred             ------cCCceeEEEecCCCC--cEEEEEeCCCcEEEEecCCCCceee--------EecCCCCceeEEEEEcCCCCeEEE
Q 018293          259 ------HDKAVCTISYNPLVP--NLLATGSTDKMVKLWDLSNNQPSCI--------ASRNPKAGAVFSVAFSEDSPFVLA  322 (358)
Q Consensus       259 ------~~~~i~~i~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~l~  322 (358)
                            ...+|..+.|+|-+.  ..|++-..|+.|++||+......+.        +........|.+++|.+++-. |.
T Consensus       117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT-LY  195 (452)
T 3pbp_A          117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLT-LY  195 (452)
T ss_dssp             GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSC-EE
T ss_pred             CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcE-EE
Confidence                  246799999999653  4889999999999999986322122        122223356889999997754 44


Q ss_pred             EE--ccCCeEEEE
Q 018293          323 IG--GSKGKLEIW  333 (358)
Q Consensus       323 ~~--~~dg~i~vw  333 (358)
                      ..  ..+|.|+-.
T Consensus       196 vl~~t~~GDIYAl  208 (452)
T 3pbp_A          196 CLNTTEGGDIFAF  208 (452)
T ss_dssp             EEECTTSCEEEEE
T ss_pred             EEecCCCCCEEEE
Confidence            43  366776543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.53  E-value=0.17  Score=38.49  Aligned_cols=178  Identities=9%  Similarity=0.044  Sum_probs=90.7

Q ss_pred             CcEEEEEEcCCeEEEEECCCCce------eeeecc-cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee
Q 018293          135 RNILASASADKQVKIWDVAAGKC------NLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV  207 (358)
Q Consensus       135 ~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  207 (358)
                      ..+|+....| +++.=.+.++..      ..++.. .=..+..++|+|++ .+.++  .+|.+.-.+..+...... ...
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W-~~s   78 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNW-MGR   78 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCH-HHH
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccc-ccc
Confidence            4567777777 666554444431      112211 12467899999987 54444  677766666544322211 111


Q ss_pred             cCC--------eeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCc-cEEE-eecCCceeEEEecCCCCcEEE
Q 018293          208 AAD--------VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQS-SFTL-HAHDKAVCTISYNPLVPNLLA  277 (358)
Q Consensus       208 ~~~--------i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~-~~~~~~i~~i~~~~~~~~~l~  277 (358)
                      ...        ..++.|+|++ .+.++  .||.|+-++..+.....    ..- -..+ ..-=..+..|.+.|+| .+.+
T Consensus        79 ~t~IG~~Gw~~F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~~----Wl~~a~~vg~~gw~~~~~lff~p~G-~Lya  150 (236)
T 1tl2_A           79 AKKIGNGGWNQFQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTDN----WIARATEVGSGGWSGFKFLFFHPNG-YLYA  150 (236)
T ss_dssp             CEEEECSCGGGCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCC----HHHHSEEEECSSGGGEEEEEECTTS-CEEE
T ss_pred             ccEecccccccceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCCc----eeccccEeccCCCCceEEEEECCCc-eEEE
Confidence            122        4788999954 34444  66988877653321100    000 0111 1111467999999998 5554


Q ss_pred             EEeCCCcEEEEecCCCCc-----eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeE
Q 018293          278 TGSTDKMVKLWDLSNNQP-----SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKL  330 (358)
Q Consensus       278 ~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  330 (358)
                      +.  |+.++-.......-     .........-..-..+.|.+++. +++..  +|.+
T Consensus       151 v~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~-l~~v~--~g~~  203 (236)
T 1tl2_A          151 VH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ--GGKF  203 (236)
T ss_dssp             EE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE--TTEE
T ss_pred             Ee--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc-EEEEe--CCeE
Confidence            44  77754333322110     00111112222344577999997 45443  6743

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.0084  Score=49.37  Aligned_cols=193  Identities=10%  Similarity=0.024  Sum_probs=101.4

Q ss_pred             cEEEEEEcCCeEEEEECCCCceeeeecccc-cceeeEEE--cCCCCcEEEEE-eCCCcEEEEEcccCCCccceeeecCCe
Q 018293          136 NILASASADKQVKIWDVAAGKCNLTLEHHT-DKVQAVAW--NHHSPQILLSG-SFDRSVVMKDARISTHSGFKWAVAADV  211 (358)
Q Consensus       136 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~--~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i  211 (358)
                      .+++.++.||.|.-.|.++|+.+.+++... .++....-  .+.+...++.. +.||.|..++..++.... .......+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~-~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL-PLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE-EEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe-eeccccce
Confidence            378899999999999999999998887541 22222110  01121333333 579999999987663321 11111111


Q ss_pred             e--eEEEc-------C---CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecC--Cc-----eeEEEec---
Q 018293          212 E--SLAWD-------P---HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--KA-----VCTISYN---  269 (358)
Q Consensus       212 ~--~~~~~-------~---~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~-----i~~i~~~---  269 (358)
                      .  -+...       +   ..+..+++|+.+|.+...|++++         +.+..+....  ..     ..|....   
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG---------~~~W~~~~~~~~~~~~~~~e~~~~~~d~~  160 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG---------EIISAFGPGSKNGYFGSQSVDCSPEEKIK  160 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTC---------CEEEEESTTCBCC----------------
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC---------cEEEEEecCCCcccccccccccccccccc
Confidence            0  01110       0   02347899999999999999998         5555554321  10     0111111   


Q ss_pred             C-CCCcEEEEEeCCCcEEEEecCCCCceeeEec---CCC--Ccee-EEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          270 P-LVPNLLATGSTDKMVKLWDLSNNQPSCIASR---NPK--AGAV-FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       270 ~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~--~~~v-~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      . ..+..++.+..+..+.+.+ ++++. -...+   ...  ..++ .+-..+.++.+ + .++.||.|.-+|..+|+.+-
T Consensus       161 ~d~~~~~v~ig~~~y~v~~~~-~sG~~-W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~-~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          161 LQECENMIVIGKTIFELGIHS-YDGAS-YNVTYSTWQQNVLDVPLALQNTFSKDGMC-I-APFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             ----CCEEEEEEEEEECEECC-TTSCC-CCCEEEEEECCTTTHHHHTTCSSCSSSCC-E-EEETTTEEEEECSTTCCEEE
T ss_pred             cccCCCeEEEecceEEEEEEC-CCCCe-EEEecccccccccccccccccccccCCcE-E-EECCCCEEEEEECCCCcEEE
Confidence            0 1124677777777777766 34431 11110   000  0000 00011234663 3 36788999999888887654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.44  E-value=0.11  Score=39.60  Aligned_cols=101  Identities=7%  Similarity=0.014  Sum_probs=58.7

Q ss_pred             cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccc--------eeeEEEcCCCCcEEEEEeCCCcEEEEEc
Q 018293          124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDK--------VQAVAWNHHSPQILLSGSFDRSVVMKDA  195 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~~~~~dg~i~i~d~  195 (358)
                      .+..++|+|+ +.+.+.  .+|.+.-.+..+.....-+. ....        ..++.|.|++ .+.++  .||.|.-++-
T Consensus        42 ~~~~laf~P~-G~LYaV--~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G-~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           42 NFKFLFLSPG-GELYGV--LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNG-YLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TCSEEEECTT-SCEEEE--ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTS-CEEEE--ETTEEEEESC
T ss_pred             cceeEEECCC-ccEEEE--eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCC-CEEEe--CCCEEEEeCC
Confidence            5669999997 555554  77877766654432211111 1112        4788999998 54444  5699888775


Q ss_pred             ccCCCcccee---e----ecCCeeeEEEcCCCCCeEEEEecCCeEE
Q 018293          196 RISTHSGFKW---A----VAADVESLAWDPHAEHSFVVSLEDGTIK  234 (358)
Q Consensus       196 ~~~~~~~~~~---~----~~~~i~~~~~~~~~~~~~~~~~~dg~i~  234 (358)
                      -+........   .    .-..+..+.+.|++ .+.++.  |+.++
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--dg~ly  157 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH--GQQFY  157 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE--TTEEE
T ss_pred             CcCCCCceeccccEeccCCCCceEEEEECCCc-eEEEEe--CCcEE
Confidence            3332221100   1    11467899999954 344444  88754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.43  E-value=0.4  Score=41.46  Aligned_cols=110  Identities=12%  Similarity=0.187  Sum_probs=57.6

Q ss_pred             cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee---------ecCCeeeEEEcCC---CCCeEEEEec----
Q 018293          166 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---------VAADVESLAWDPH---AEHSFVVSLE----  229 (358)
Q Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~i~~~~~~~~---~~~~~~~~~~----  229 (358)
                      .....|+|.|+| +++++-...+.|++++..++.... ...         .......++|+|+   ++.++++-+.    
T Consensus        27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~-~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKT-VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEE-EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeE-EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            346799999999 666554433468888764433211 111         2345668999995   4544444332    


Q ss_pred             --------CCeEEEEEcccCCCCCCCCCCCccEE-Eee-cCCceeEEEecCCCCcEEEEEe
Q 018293          230 --------DGTIKGFDIRTAKSDPDSTSQQSSFT-LHA-HDKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       230 --------dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~-~~~~i~~i~~~~~~~~~l~~~~  280 (358)
                              ...|.-|+........  ...+.+.. +.. .......|+|.|+| .+.++.+
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~--~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTL--EKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEE--EEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred             CCccccccccEEEEEEECCCCCCc--CCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence                    2345556554321000  00011111 211 12346889999998 5555543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.40  E-value=0.41  Score=41.36  Aligned_cols=58  Identities=12%  Similarity=0.113  Sum_probs=32.2

Q ss_pred             cEEEEEeCCCcEEEEecCC-CCcee--eEecCCCCceeEEEEEcCCCCeEEEEEccCCeEE
Q 018293          274 NLLATGSTDKMVKLWDLSN-NQPSC--IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE  331 (358)
Q Consensus       274 ~~l~~~~~dg~i~i~d~~~-~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  331 (358)
                      .+++..-..+.|....+.. +....  ...+......+..|++.|||..|+++-+..|.+.
T Consensus       370 ~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~~~~R~~dv~~gpDG~~Lyv~~d~~G~i~  430 (454)
T 1cru_A          370 TLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTDTAGNVQ  430 (454)
T ss_dssp             EEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEECSSCCEE
T ss_pred             cEEEeecCCCEEEEEEECCCCCeeeeeeeeecccCCCceeEEECCCCCEEEEEECCCCCCc
Confidence            3455444466677777764 22111  1122222368999999999962355445556554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.38  E-value=0.63  Score=43.27  Aligned_cols=191  Identities=10%  Similarity=0.093  Sum_probs=108.2

Q ss_pred             cccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc
Q 018293          122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS  201 (358)
Q Consensus       122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  201 (358)
                      ...|.++.-..+ + .|..|+.+| +..||..+.+...........|.++.. .++  .+..++.+ .+..+|..+.+..
T Consensus        62 ~~~i~~i~~d~~-g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g--~lWigt~~-Gl~~~~~~~~~~~  134 (758)
T 3ott_A           62 NTRIYCGVIIDN-T-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD--TLWLGALN-GLYTYQLQSRKLT  134 (758)
T ss_dssp             SSCEEEEEEETT-T-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT--EEEEEETT-EEEEEETTTCCEE
T ss_pred             CceEEEEEEcCC-C-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC--cEEEEcCC-cceeEeCCCCeEE
Confidence            356888877766 3 566666655 789998776433211112234666654 344  45556655 5778887654432


Q ss_pred             ccee----eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe--e----cCCceeEEEecCC
Q 018293          202 GFKW----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--A----HDKAVCTISYNPL  271 (358)
Q Consensus       202 ~~~~----~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~----~~~~i~~i~~~~~  271 (358)
                      ....    .....|.++....++  .+..|+.+ -+..||..+..          ...+.  .    ....|.++...++
T Consensus       135 ~~~~~~~~l~~~~i~~i~~d~~g--~lWigt~~-Gl~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~i~~d~~  201 (758)
T 3ott_A          135 SFDTRRNGLPNNTIYSIIRTKDN--QIYVGTYN-GLCRYIPSNGK----------FEGIPLPVHSSQSNLFVNSLLEDTT  201 (758)
T ss_dssp             EECHHHHCCSCSCEEEEEECTTC--CEEEEETT-EEEEEETTTTE----------EEEECCCCCTTCSSCCEEEEEEETT
T ss_pred             EeccCCCCcCCCeEEEEEEcCCC--CEEEEeCC-CHhhCccCCCc----------eEEecCCCccccccceeEEEEEECC
Confidence            1100    112457777776633  45556654 47778876541          11111  0    1224788887776


Q ss_pred             CCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          272 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       272 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      + ..|..|+. +-+..+|..+++.......  ....|.++...++|. +.+ |+. +-+.+++..+++
T Consensus       202 ~-~~lWigt~-~Gl~~~~~~~~~~~~~~~l--~~~~i~~i~~d~~g~-lWi-gT~-~Gl~~~~~~~~~  262 (758)
T 3ott_A          202 R-QCVWIGTE-GYLFQYFPSTGQIKQTEAF--HNNSIKSLALDGNGD-LLA-GTD-NGLYVYHNDTTP  262 (758)
T ss_dssp             T-TEEEEEEE-EEEEEEETTTTEEEEEEEE--EEEEEEEEEECTTCC-EEE-EET-TEEEEECCTTSC
T ss_pred             C-CEEEEEEC-CCCeEEcCCCCeEEeccCC--CCCeEEEEEEcCCCC-EEE-EeC-CceeEEecCCCc
Confidence            5 54555554 4588899877653222222  234688888888887 344 444 457888876543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.36  E-value=0.53  Score=46.36  Aligned_cols=237  Identities=9%  Similarity=0.108  Sum_probs=124.4

Q ss_pred             ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEc
Q 018293            3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDL   82 (358)
Q Consensus         3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~   82 (358)
                      ++|..++++.-. ..     .+.+|+....   .....|.  ++..+.--+|+      +++  .|+-.+ +..|+-|++
T Consensus        73 MnP~~~iiALra-g~-----~lQiFnl~~k---~klks~~--~~e~VvfWkWi------s~~--~l~lVT-~~aVyHW~~  132 (1630)
T 1xi4_A           73 MNPASKVIALKA-GK-----TLQIFNIEMK---SKMKAHT--MTDDVTFWKWI------SLN--TVALVT-DNAVYHWSM  132 (1630)
T ss_pred             cCCCcceEEEec-CC-----eEEEeehHHh---hhhcccc--cCCCceEEEec------CCC--eeEEEc-CCeEEEecc
Confidence            688888777763 32     5666666543   1122221  33445567786      233  343333 458999999


Q ss_pred             ccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE------cCCeEEEEECCCCc
Q 018293           83 DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS------ADKQVKIWDVAAGK  156 (358)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~  156 (358)
                      ....  .|..++.                  ....+.  ...|..-..+++...++++|-      -.|.+.+|..+.+ 
T Consensus       133 ~~~s--~P~k~fd------------------R~~~L~--~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-  189 (1630)
T 1xi4_A          133 EGES--QPVKMFD------------------RHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-  189 (1630)
T ss_pred             CCCC--ccHHHHh------------------cchhcc--cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-
Confidence            6411  1111110                  000111  355777777777443444442      3588999997754 


Q ss_pred             eeeeecccccceeeEEEc--CCCCcEEEEEeC---CCcEEEEEcccC---CCcc------ceee---ecCCeeeEEEcCC
Q 018293          157 CNLTLEHHTDKVQAVAWN--HHSPQILLSGSF---DRSVVMKDARIS---THSG------FKWA---VAADVESLAWDPH  219 (358)
Q Consensus       157 ~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~---dg~i~i~d~~~~---~~~~------~~~~---~~~~i~~~~~~~~  219 (358)
                      ..+.+.+|......+...  +....+++.+..   .+.+.+.++...   ....      ....   ...-..++..++.
T Consensus       190 ~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k  269 (1630)
T 1xi4_A          190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK  269 (1630)
T ss_pred             cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc
Confidence            455667776655444442  222133333322   378999888543   1100      0011   1223455666664


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  293 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~  293 (358)
                       ...+..-+.-|.+.+||+.++         .+++.-+-...+|...+.++..+. ++.....|.|.--.+...
T Consensus       270 -~g~iy~itk~G~~~~~d~~t~---------~~i~~~ris~~~iF~~~~~~~~~g-~~~vnr~G~vl~v~v~~~  332 (1630)
T 1xi4_A          270 -HDVVFLITKYGYIHLYDLETG---------TCIYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEE  332 (1630)
T ss_pred             -cCEEEEEecCceEEEEecccc---------hhhhhccccCCceEEeccCCCCCc-eEEEcCCceEEEEEEccc
Confidence             347788889999999999998         444444434444444444433312 333335566555555443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.24  E-value=0.14  Score=47.02  Aligned_cols=197  Identities=10%  Similarity=0.138  Sum_probs=97.0

Q ss_pred             CcEEEEEEcC----CeEEEEECCCCceeeee-c------ccccceeeEEEcC-CCCcEEEEEeCCC------cEEEEEcc
Q 018293          135 RNILASASAD----KQVKIWDVAAGKCNLTL-E------HHTDKVQAVAWNH-HSPQILLSGSFDR------SVVMKDAR  196 (358)
Q Consensus       135 ~~~l~s~~~d----g~v~iwd~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~~l~~~~~dg------~i~i~d~~  196 (358)
                      +.+++.|+.+    ..+.+||..+++-...- .      .....-.+++..+ ++ .+++.|+.++      .+.+||..
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~-~lyv~GG~~~~~~~~~dv~~yd~~  476 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN-QLLLIGGRKAPHQGLSDNWIFDMK  476 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTT-EEEEECCBSSTTCBCCCCEEEETT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCC-EEEEEcCCCCCCCccccEEEEeCC
Confidence            4577777753    46889998877533221 1      0111112333333 55 6777777543      47788877


Q ss_pred             cCCCccce-eeecCCeeeEEEcCCCCCeEEEEecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC
Q 018293          197 ISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  273 (358)
Q Consensus       197 ~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  273 (358)
                      +.+-.... ......-.+++... ++.+++.|+.++  .+.+||..+..-........    .........++.+....+
T Consensus       477 t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~----~p~~r~~~~a~v~~~~~~  551 (695)
T 2zwa_A          477 TREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDE----FFQNSLVSAGLEFDPVSK  551 (695)
T ss_dssp             TTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSG----GGGSCCBSCEEEEETTTT
T ss_pred             CCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCC----CCCcccceeEEEEeCCCC
Confidence            64321100 00111112222222 455777777654  68999987652110000000    111111223355555423


Q ss_pred             cEEEEEeC--C-----CcEEEEecCCCC------ceeeEecC-CCCceeEEEEEcCCCCeEEEEEccC--------CeEE
Q 018293          274 NLLATGST--D-----KMVKLWDLSNNQ------PSCIASRN-PKAGAVFSVAFSEDSPFVLAIGGSK--------GKLE  331 (358)
Q Consensus       274 ~~l~~~~~--d-----g~i~i~d~~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~  331 (358)
                      .+++.|+.  +     ..+.+||+.+..      ...+.... ...... +++...++. +++.||.+        ..+.
T Consensus       552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRK-LLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTE-EEEECCBCSSCCCCTTTSEE
T ss_pred             EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCE-EEEECCccCCCCCCCCCeEE
Confidence            67777765  2     358899998877      22222211 111111 223333355 67778743        4589


Q ss_pred             EEEccCCC
Q 018293          332 IWDTLSDA  339 (358)
Q Consensus       332 vw~~~~~~  339 (358)
                      +||+.+.+
T Consensus       630 ~yd~~t~~  637 (695)
T 2zwa_A          630 SLDPLSET  637 (695)
T ss_dssp             EEETTTTE
T ss_pred             EEECCCCe
Confidence            99987653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.19  E-value=0.36  Score=44.32  Aligned_cols=154  Identities=12%  Similarity=0.181  Sum_probs=78.6

Q ss_pred             CcEEEEEEcCC------eEEEEECCCCceee--eecccccceeeEEEcCCCCcEEEEEeCCC--cEEEEEcccCCCccce
Q 018293          135 RNILASASADK------QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFK  204 (358)
Q Consensus       135 ~~~l~s~~~dg------~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~  204 (358)
                      +.+++.|+.++      .+.+||..+.+-..  .+..... -.+++...++ .+++.|+.++  .+.+||..+..-....
T Consensus       452 ~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          452 NQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDG-NVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTS-CEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCC-EEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            55777776543      58889988754322  2221111 1223332355 7788887655  6889998765321111


Q ss_pred             -----eeecCCeeeEEEcCCCCCeEEEEec--C-----CeEEEEEcccCCCCCCCCCCCccEEEee---cCCceeEEEec
Q 018293          205 -----WAVAADVESLAWDPHAEHSFVVSLE--D-----GTIKGFDIRTAKSDPDSTSQQSSFTLHA---HDKAVCTISYN  269 (358)
Q Consensus       205 -----~~~~~~i~~~~~~~~~~~~~~~~~~--d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~i~~i~~~  269 (358)
                           ........++.+....+.+++.|+.  +     ..+.+||+.+..- ...   .....+..   ....-.+++..
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w-~~~---~~W~~~~~~p~~~R~~~~~~~~  605 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENA-TEP---ITVIKKLQHPLFQRYGSQIKYI  605 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCS-SCC---EEEEEEEECGGGCCBSCEEEEE
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCcc-ccc---eEEEEcCCCCCCCcccceEEEe
Confidence                 0011122335555533556777765  2     4688999987631 000   00111111   11111223333


Q ss_pred             CCCCcEEEEEeC--------CCcEEEEecCCCCc
Q 018293          270 PLVPNLLATGST--------DKMVKLWDLSNNQP  295 (358)
Q Consensus       270 ~~~~~~l~~~~~--------dg~i~i~d~~~~~~  295 (358)
                      .++ .+++.|+.        ...+.+||+.+.+.
T Consensus       606 ~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          606 TPR-KLLIVGGTSPSGLFDRTNSIISLDPLSETL  638 (695)
T ss_dssp             ETT-EEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred             CCC-EEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence            324 67777774        34599999988764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.16  E-value=0.41  Score=38.99  Aligned_cols=101  Identities=16%  Similarity=0.163  Sum_probs=50.4

Q ss_pred             CcEEEEEEcC-------CeEEEEECCCCceeee--ecccccceeeEEEcCCCCcEEEEEeC------CCcEEEEEcccCC
Q 018293          135 RNILASASAD-------KQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSF------DRSVVMKDARIST  199 (358)
Q Consensus       135 ~~~l~s~~~d-------g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~  199 (358)
                      +.+++.|+.+       ..+.+||+.+.+-...  +...... .+++. .++ .+++.|+.      -..+.+||+.+.+
T Consensus       110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVIS-HNG-MIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEE-ETT-EEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEE-ECC-EEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            5577777764       3588899887643221  2111111 11222 244 66666654      2358888987653


Q ss_pred             Cccce--eeecCCeeeEEEcCCCCCeEEEEecC-----CeEEEEEcccC
Q 018293          200 HSGFK--WAVAADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTA  241 (358)
Q Consensus       200 ~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~  241 (358)
                      -....  ........++.+   ++.+++.|+.+     ..+.+||+.+.
T Consensus       187 W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          187 WKDLAPMKTPRSMFGVAIH---KGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             EEEECCCSSCCBSCEEEEE---TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             EEECCCCCCCcccceEEEE---CCEEEEEcCcCCCCccceEEEEECCCC
Confidence            21110  001111122222   34567776543     35778888765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.66  E-value=0.75  Score=38.00  Aligned_cols=61  Identities=8%  Similarity=0.076  Sum_probs=33.2

Q ss_pred             CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEE
Q 018293          210 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT  278 (358)
Q Consensus       210 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~  278 (358)
                      ....++|..  +.+++.....+.|....+......     ......+......+..++..|+| .++++
T Consensus       264 ap~G~~~~~--g~~~~~~l~~~~l~~v~~~~~~~~-----~~~e~~l~~~~gR~~dv~~~pDG-~lyv~  324 (347)
T 3das_A          264 SPSGIAYAE--GSVWMAGLRGERLWRIPLKGTAAA-----ADPQAFLEGEYGRLRTVAPAGGD-KLWLV  324 (347)
T ss_dssp             CEEEEEEET--TEEEEEESTTCSEEEEEEETTEES-----SCCEEESTTTSSCEEEEEEEETT-EEEEE
T ss_pred             CCcceEEEc--CceeeccccCCEEEEEEecCCcee-----cceEEeecCCCCCccEEEECCCC-cEEEE
Confidence            445666654  345565556666766666544210     01122223334668889999988 44443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.58  E-value=0.73  Score=37.31  Aligned_cols=174  Identities=7%  Similarity=-0.006  Sum_probs=84.6

Q ss_pred             ecCCCCCcEEEEEE--cCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce
Q 018293          129 AWNKEFRNILASAS--ADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  204 (358)
Q Consensus       129 ~~~~~~~~~l~s~~--~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  204 (358)
                      .|++++. .|+-..  .++  .|..-++.. .....+..+..    ..+++++..+..+......|...++....... .
T Consensus       110 ~~s~~g~-~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~-l  182 (302)
T 3s25_A          110 YASLIGN-YIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL-F  182 (302)
T ss_dssp             EEEEETT-EEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEE-E
T ss_pred             EEEEeCC-EEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEE-E
Confidence            5566744 555444  334  455555543 33344433322    34567774444443336678777776554322 1


Q ss_pred             eeecCCeeeEEEcCCCCCeEEEEecC-CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe--C
Q 018293          205 WAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS--T  281 (358)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~--~  281 (358)
                      .  ..... ..+.|+++.++.+...+ ..|..-++...          ....+..  ..+  ..|+|++ .+|+-+.  .
T Consensus       183 ~--~~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~----------~~~~Lt~--~~~--~~~~~~g-~~Iy~~~~~~  244 (302)
T 3s25_A          183 Y--DCNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP----------NPVVLTE--ANI--EHYNVYG-SLIFYQRGGD  244 (302)
T ss_dssp             E--CSCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC----------CCEECSC--SCE--EEEEEET-TEEEEEECSS
T ss_pred             e--CCCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCC----------CeEEEeC--CCc--ceEEECC-CEEEEEECCC
Confidence            1  22222 33558666555554333 35555555443          1222221  223  3367777 5555442  2


Q ss_pred             CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEE
Q 018293          282 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  334 (358)
Q Consensus       282 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~  334 (358)
                      .+.|..-++.......+..  .   .+.  .+++.+.+++.+--..+.|..-+
T Consensus       245 ~~~i~~~~~DG~~r~~l~~--~---~~~--~i~i~~d~Iy~td~~~~~i~~~~  290 (302)
T 3s25_A          245 NPALCVVKNDGTGFKELAK--G---EFC--NINVTSQYVYFTDFVSNKEYCTS  290 (302)
T ss_dssp             SCEEEEEETTSCCCEEEEE--S---CEE--EEEECSSEEEEEETTTCCEEEEE
T ss_pred             CcEEEEEECCCCccEEeeC--C---ccc--eEEEeCCEEEEEECCCCeEEEEE
Confidence            4567777776654333322  1   233  34456666666655556655444

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.37  E-value=1.7  Score=40.29  Aligned_cols=185  Identities=11%  Similarity=0.191  Sum_probs=101.1

Q ss_pred             cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeec-----ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC
Q 018293          124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-----HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  198 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  198 (358)
                      .|.++.. .+ + .|..++.+ -+..+|..+++.. .+.     .....|.++...+++ .+. .++.+ -+..+|..+.
T Consensus       104 ~i~~i~~-~~-g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g-~lW-igt~~-Gl~~~~~~~~  175 (758)
T 3ott_A          104 DVRTMAL-QG-D-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDN-QIY-VGTYN-GLCRYIPSNG  175 (758)
T ss_dssp             CEEEEEE-ET-T-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTC-CEE-EEETT-EEEEEETTTT
T ss_pred             eEEEEEe-cC-C-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCC-CEE-EEeCC-CHhhCccCCC
Confidence            4666654 34 3 45556665 5888898766533 221     113457788777776 444 45554 4777776654


Q ss_pred             CCccceee-----ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC
Q 018293          199 THSGFKWA-----VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  273 (358)
Q Consensus       199 ~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  273 (358)
                      +.......     ....|.++...+++ ..+..|+. +-+..+|..+...       .....+  ....|.++...+++ 
T Consensus       176 ~~~~~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~~~~-------~~~~~l--~~~~i~~i~~d~~g-  243 (758)
T 3ott_A          176 KFEGIPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPSTGQI-------KQTEAF--HNNSIKSLALDGNG-  243 (758)
T ss_dssp             EEEEECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEEEEETTTTEE-------EEEEEE--EEEEEEEEEECTTC-
T ss_pred             ceEEecCCCccccccceeEEEEEECCC-CEEEEEEC-CCCeEEcCCCCeE-------EeccCC--CCCeEEEEEEcCCC-
Confidence            32111111     11237777776633 35566664 4588888765411       111111  23457888887766 


Q ss_pred             cEEEEEeCCCcEEEEecCCCCceeeEecC-----CCCceeEEEEEcCCCCeEEEEEccCCeEEEE
Q 018293          274 NLLATGSTDKMVKLWDLSNNQPSCIASRN-----PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW  333 (358)
Q Consensus       274 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw  333 (358)
                      . |..|+.+ -+.+++..+.+........     -....|.++....+|. +.+ |+..| +.++
T Consensus       244 ~-lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWi-GT~~G-l~~~  303 (758)
T 3ott_A          244 D-LLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWL-GTDYG-ISLS  303 (758)
T ss_dssp             C-EEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEE-EESSS-EEEE
T ss_pred             C-EEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEE-EeCCc-cccc
Confidence            3 4445544 5888888766532211110     1234588998888887 343 45556 4443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.74  E-value=1.3  Score=35.73  Aligned_cols=161  Identities=6%  Similarity=-0.025  Sum_probs=78.7

Q ss_pred             CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEe--CC--CcEEEEEcccCCCccceeeecCCeeeEEEcCCC
Q 018293          145 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS--FD--RSVVMKDARISTHSGFKWAVAADVESLAWDPHA  220 (358)
Q Consensus       145 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  220 (358)
                      ..|+..++..++... +..  ..  +..|++++ ..|+-..  .+  ..|...++....... ....  .+  ..+++++
T Consensus        88 ~~Iy~i~~dg~~~~~-l~~--~~--~~~~s~~g-~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~-lt~~--~~--~~~~~~g  156 (302)
T 3s25_A           88 NSLCRIKRNGHGSTV-LDP--DP--CIYASLIG-NYIYYLHYDTQTATSLYRIRIDGEEKKK-IKNH--YL--FTCNTSD  156 (302)
T ss_dssp             EEEEEEETTSCCCEE-EEC--SC--EEEEEEET-TEEEEEEESSSSCEEEEEEETTSCCCEE-EESS--CC--CCSEEET
T ss_pred             CeEEEEeCCCCcceE-eec--CC--ccEEEEeC-CEEEEEeecCCCCceEEEEECCCCCeEE-EeCC--Cc--eEeeEEC
Confidence            367777776654322 221  11  23667777 4555544  33  445555554333222 2222  22  3456666


Q ss_pred             CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC-C-CcEEEEecCCCCceee
Q 018293          221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-D-KMVKLWDLSNNQPSCI  298 (358)
Q Consensus       221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~  298 (358)
                      +.++.+......|...++...         .. ..+..  +... ..+.|++ .+|+-... + ..|..-++......  
T Consensus       157 ~~iy~t~~g~~~Iy~~~l~g~---------~~-~~l~~--~~~~-~~~~P~g-~~iy~t~~~~~~~I~~~~ldG~~~~--  220 (302)
T 3s25_A          157 RYFYYNNPKNGQLYRYDTASQ---------SE-ALFYD--CNCY-KPVVLDD-TNVYYMDVNRDNAIVHVNINNPNPV--  220 (302)
T ss_dssp             TEEEEECTTTCCEEEEETTTT---------EE-EEEEC--SCEE-EEEEEET-TEEEEEEGGGTTEEEEECSSSCCCE--
T ss_pred             CEEEEEeCCCceEEEEECCCC---------CE-EEEeC--CCcc-ceeeecC-CEEEEEEcCCCcEEEEEECCCCCeE--
Confidence            655556554667777777654         21 22211  2222 3356887 45544433 2 35666676665532  


Q ss_pred             EecCCCCceeEEEEEcCCCCeEEEEE-ccCCeEEEEEccC
Q 018293          299 ASRNPKAGAVFSVAFSEDSPFVLAIG-GSKGKLEIWDTLS  337 (358)
Q Consensus       299 ~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~vw~~~~  337 (358)
                       .+..  ..+  ..|+|++..++.+. ...+.|..-++..
T Consensus       221 -~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          221 -VLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             -ECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             -EEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence             2221  223  23777787655442 2235566555543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.38  E-value=1.9  Score=35.81  Aligned_cols=209  Identities=11%  Similarity=0.050  Sum_probs=105.9

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc-eeeeec---ccccceeeEEEcCC---CCcEEEEEeC---C----C
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTLE---HHTDKVQAVAWNHH---SPQILLSGSF---D----R  188 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~~l~~~~~---d----g  188 (358)
                      .....++|.|+ +. |+.+..+|.|.+++ .+++ .+..+.   ........|+++|+   +..++++-+.   +    .
T Consensus        29 ~~P~~ia~~pd-G~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           29 EVPWSIAPLGG-GR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             SCEEEEEEEET-TE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCeEEEEcCC-Ce-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            45789999999 54 55566779999997 4454 222211   12345789999997   4244444332   3    5


Q ss_pred             cEEEEEcccCC--C--cc-ceeee----cCCeeeEEEcCCCCCeEEEEec-------------CCeEEEEEcccCCCCCC
Q 018293          189 SVVMKDARIST--H--SG-FKWAV----AADVESLAWDPHAEHSFVVSLE-------------DGTIKGFDIRTAKSDPD  246 (358)
Q Consensus       189 ~i~i~d~~~~~--~--~~-~~~~~----~~~i~~~~~~~~~~~~~~~~~~-------------dg~i~i~d~~~~~~~~~  246 (358)
                      .|..++.....  .  .. .....    ......++|.|++ .++++.+.             .|.|.-++....-. ..
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p-~~  183 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP-AD  183 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC-TT
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC-CC
Confidence            67777765431  0  00 01111    1235679999966 45554322             24555555432100 00


Q ss_pred             CCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC---cEEEEecCC--------C------CceeeEecCCCCceeE
Q 018293          247 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---MVKLWDLSN--------N------QPSCIASRNPKAGAVF  309 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg---~i~i~d~~~--------~------~~~~~~~~~~~~~~v~  309 (358)
                      ........-..++.. ...++|+|+.+.++++-...+   .|.+.....        +      -......+........
T Consensus       184 npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~  262 (354)
T 3a9g_A          184 NPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS  262 (354)
T ss_dssp             SSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred             CCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence            000011111233433 468999994325555533222   243332111        0      0012223311223567


Q ss_pred             EEEEc-------CCCCeEEEEEccCCeEEEEEccCC
Q 018293          310 SVAFS-------EDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       310 ~~~~~-------~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      .++|.       .+|. ++++.-..+.|...++...
T Consensus       263 G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~~~  297 (354)
T 3a9g_A          263 GASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFGDN  297 (354)
T ss_dssp             EEEECCSSSCGGGTTE-EEEEETTTTEEEEEEECGG
T ss_pred             ceEEECCCCCcccCCc-EEEEEcCCCEEEEEEECCC
Confidence            78883       4665 5666666778888888753

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.18  E-value=2.1  Score=35.54  Aligned_cols=61  Identities=13%  Similarity=0.179  Sum_probs=34.6

Q ss_pred             CeeeEEEcCC------CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecCCCCcEEEE
Q 018293          210 DVESLAWDPH------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLAT  278 (358)
Q Consensus       210 ~i~~~~~~~~------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~  278 (358)
                      .+..+.|...      .+.++++....+.|...++.....       .....+ ......+..+++.|+| .++++
T Consensus       272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~rp~~v~~~pdG-~lyv~  339 (353)
T 2g8s_A          272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKV-------TEDGRILTDRGQRIRDVRTGPDG-YLYVL  339 (353)
T ss_dssp             CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEE-------EEEEEESGGGCCCEEEEEECTTS-CEEEE
T ss_pred             CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeE-------eeeEEcccCCCCceeEEEECCCC-cEEEE
Confidence            4566777542      244666666677888888774310       001111 1223468899999998 54443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.50  E-value=2.7  Score=34.55  Aligned_cols=104  Identities=7%  Similarity=0.025  Sum_probs=55.4

Q ss_pred             CcEEEEEEcCCeEEEEECCCCceeeeeccccc--c-----eeeEEEc---C-CCCcEEEEEeCCCcEEEEEcccCCCccc
Q 018293          135 RNILASASADKQVKIWDVAAGKCNLTLEHHTD--K-----VQAVAWN---H-HSPQILLSGSFDRSVVMKDARISTHSGF  203 (358)
Q Consensus       135 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~-----v~~~~~~---~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~  203 (358)
                      +..+++|+.+|.+...|+.+|+.+..+.....  .     ..|....   . .....++.+..+..+.+.+ ++++ .-.
T Consensus       111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~  188 (339)
T 2be1_A          111 DEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYN  188 (339)
T ss_dssp             CEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC-CCC
T ss_pred             CCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEE
Confidence            34789999999999999999999988863211  0     0111110   0 1114566777777777666 3332 110


Q ss_pred             e-ee-ecC-Cee-----eEEEcCCCCCeEEEEecCCeEEEEEcccCC
Q 018293          204 K-WA-VAA-DVE-----SLAWDPHAEHSFVVSLEDGTIKGFDIRTAK  242 (358)
Q Consensus       204 ~-~~-~~~-~i~-----~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~  242 (358)
                      . .. ... .+.     .-.... ++ .+++++.||.|.-+|..++.
T Consensus       189 ~~~s~~~~~~~~~~~~~~~~~s~-Dg-~~~~~~~dg~v~A~d~~~G~  233 (339)
T 2be1_A          189 VTYSTWQQNVLDVPLALQNTFSK-DG-MCIAPFRDKSLLASDLDFRI  233 (339)
T ss_dssp             CEEEEEECCTTTHHHHTTCSSCS-SS-CCEEEETTTEEEEECSTTCC
T ss_pred             Eeccccccccccccccccccccc-CC-cEEEECCCCEEEEEECCCCc
Confidence            0 00 000 000     000011 12 33557889999999888763

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=93.03  E-value=3.6  Score=34.61  Aligned_cols=155  Identities=13%  Similarity=0.091  Sum_probs=74.9

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCC----eEEEEECCCCceeeeec------c--------cccceeeEEEcCCC-CcEEEE
Q 018293          123 DSVLGLAWNKEFRNILASASADK----QVKIWDVAAGKCNLTLE------H--------HTDKVQAVAWNHHS-PQILLS  183 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg----~v~iwd~~~~~~~~~~~------~--------~~~~v~~~~~~~~~-~~~l~~  183 (358)
                      ..|.+|++.|.+...+.++...|    .|...+ ..++.-..+.      .        ....|.++++.|.. +..+.+
T Consensus        55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~  133 (394)
T 3b7f_A           55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA  133 (394)
T ss_dssp             SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred             CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence            56999999983233454555554    343332 2232211111      0        11257788888742 355666


Q ss_pred             EeCCCcEEEEEcccCC--Cccce----------------eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCC
Q 018293          184 GSFDRSVVMKDARIST--HSGFK----------------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP  245 (358)
Q Consensus       184 ~~~dg~i~i~d~~~~~--~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~  245 (358)
                      +...+.|...+=....  .....                ......+.++.++|.++..++++..++.|...  ....   
T Consensus       134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s--~DgG---  208 (394)
T 3b7f_A          134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFES--TDAG---  208 (394)
T ss_dssp             EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEE--SSTT---
T ss_pred             EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEE--CCCC---
Confidence            6655655443211111  11000                00123477899988555566666555544433  2221   


Q ss_pred             CCCCCCccEEEee-------------cCCceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 018293          246 DSTSQQSSFTLHA-------------HDKAVCTISYNPLVPNLLATGSTDKMVKLWD  289 (358)
Q Consensus       246 ~~~~~~~~~~~~~-------------~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d  289 (358)
                           .....+..             ....+.++.+.|..+..|+++...+ |...+
T Consensus       209 -----~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~  259 (394)
T 3b7f_A          209 -----TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD  259 (394)
T ss_dssp             -----SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred             -----CCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence                 11111100             0124788999987546777776554 44443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.35  E-value=5  Score=34.67  Aligned_cols=73  Identities=8%  Similarity=-0.040  Sum_probs=36.1

Q ss_pred             CccEEEeecC-CceeEEEecCCC------CcEEEEEeCCCcEEEEecCCCCce-eeEec---------CCCCceeEEEEE
Q 018293          251 QSSFTLHAHD-KAVCTISYNPLV------PNLLATGSTDKMVKLWDLSNNQPS-CIASR---------NPKAGAVFSVAF  313 (358)
Q Consensus       251 ~~~~~~~~~~-~~i~~i~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~---------~~~~~~v~~~~~  313 (358)
                      .++..+..|. ..+..+.|....      +.+| .+...+.|....+...... ....+         ......+..+..
T Consensus       265 ~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f-~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~  343 (463)
T 2wg3_C          265 PSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYV-FGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGE  343 (463)
T ss_dssp             CCCEECCC----CEEEEEECCCSSCTTTTTCEE-EEETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEE
T ss_pred             CCeEEeeCCCCccccceEEEeCCCChhhcceEE-EecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEE
Confidence            3444544332 467788775421      1244 4455577666665443211 11111         112357899999


Q ss_pred             cCCCCeEEEEEc
Q 018293          314 SEDSPFVLAIGG  325 (358)
Q Consensus       314 ~~~~~~~l~~~~  325 (358)
                      .|||. |+++..
T Consensus       344 ~pdG~-Lyv~~~  354 (463)
T 2wg3_C          344 DELGE-VYILSS  354 (463)
T ss_dssp             CTTCC-EEEEEE
T ss_pred             CCCCC-EEEEec
Confidence            99998 555543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=91.85  E-value=5.1  Score=33.64  Aligned_cols=99  Identities=9%  Similarity=-0.001  Sum_probs=49.1

Q ss_pred             cEEEEEEcCCeEEEEECCC-Cceeeee--cccccceeeEEEcCCCCcEEEEEeCCC----cEEEEEcccCCC---ccce-
Q 018293          136 NILASASADKQVKIWDVAA-GKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDR----SVVMKDARISTH---SGFK-  204 (358)
Q Consensus       136 ~~l~s~~~dg~v~iwd~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~---~~~~-  204 (358)
                      ..|..|...| +.+++... ++.-..+  ......|.+|++.|..+..+.++...|    .|...+ ..++.   .... 
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~  100 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP  100 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence            3677777777 55555332 2211111  122457999999983334455555554    343322 11111   1100 


Q ss_pred             -ee---------ecCCeeeEEEcCCC-CCeEEEEecCCeEEEE
Q 018293          205 -WA---------VAADVESLAWDPHA-EHSFVVSLEDGTIKGF  236 (358)
Q Consensus       205 -~~---------~~~~i~~~~~~~~~-~~~~~~~~~dg~i~i~  236 (358)
                       ..         ....|.++++.|.+ ...+++++..+.|...
T Consensus       101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S  143 (394)
T 3b7f_A          101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS  143 (394)
T ss_dssp             CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred             cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence             00         11246778888744 5567777666665543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.41  E-value=5.8  Score=34.29  Aligned_cols=112  Identities=11%  Similarity=0.143  Sum_probs=60.3

Q ss_pred             CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe---------ecCCceeEEEecCC---CCcEE
Q 018293          209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---------AHDKAVCTISYNPL---VPNLL  276 (358)
Q Consensus       209 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~i~~~~~---~~~~l  276 (358)
                      .....|+|.|++...++++...|.|++++.......      ..+..+.         ........|+++|+   .+.+.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~------~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lY   87 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFK------EPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLY   87 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCS------SCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeee------eeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEE
Confidence            456789999976535666678999999975422110      1111111         11456789999995   21343


Q ss_pred             EEEeC--C----------CcEEEEecCCC--------CceeeEecC--CCCceeEEEEEcCCCCeEEEEEccC
Q 018293          277 ATGST--D----------KMVKLWDLSNN--------QPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSK  327 (358)
Q Consensus       277 ~~~~~--d----------g~i~i~d~~~~--------~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d  327 (358)
                      ++-+.  +          ..|.-|.+...        ....+....  .....-..|+|.|||. |+++.+..
T Consensus        88 v~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd~  159 (463)
T 2wg3_C           88 VSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGDG  159 (463)
T ss_dssp             EEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECCT
T ss_pred             EEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCCC
Confidence            33332  1          13444555421        111222221  1122457899999997 56665543

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=90.95  E-value=10  Score=35.42  Aligned_cols=150  Identities=11%  Similarity=0.131  Sum_probs=79.9

Q ss_pred             cccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecc-------cccceeeEEEcCCCCcEEEEEeCCCc----E
Q 018293          122 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-------HTDKVQAVAWNHHSPQILLSGSFDRS----V  190 (358)
Q Consensus       122 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~----i  190 (358)
                      ...|.+|+++|.+...++++...+.|...+ ..++.=..+..       ....+.++++.|..+..++.+..+..    -
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~   92 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA   92 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence            458999999997666777888777766554 33432222221       12468999999865455555543211    2


Q ss_pred             EEEEcccCCCccceeee----------cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe---
Q 018293          191 VMKDARISTHSGFKWAV----------AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---  257 (358)
Q Consensus       191 ~i~d~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---  257 (358)
                      .||-.......-.....          ...+..++++|.+...++++...+.|  |--..+-        +....+.   
T Consensus        93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG--------~TW~~~~~~~  162 (789)
T 1sqj_A           93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRA--------KTWTNVTSIP  162 (789)
T ss_dssp             EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTT--------SSCEEETTSC
T ss_pred             EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCC--------cccCCCccCc
Confidence            33333222111000000          11356788888666677777644433  3333321        1111211   


Q ss_pred             ---ecCCceeEEEecCCCCcEEEEEeCC
Q 018293          258 ---AHDKAVCTISYNPLVPNLLATGSTD  282 (358)
Q Consensus       258 ---~~~~~i~~i~~~~~~~~~l~~~~~d  282 (358)
                         .....+..+.++|..+..++++..+
T Consensus       163 ~~~~~~~~~~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          163 DAFTNGIGYTSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             CCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred             cccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence               1124578899988654566666654

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.60  E-value=5.5  Score=31.73  Aligned_cols=185  Identities=16%  Similarity=0.134  Sum_probs=99.2

Q ss_pred             cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc
Q 018293          124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  203 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  203 (358)
                      .|..++....  ..++. . ||.|..|-....-.+..-..-...|..++....   ..+.-. ||.|..|-.........
T Consensus        64 ~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg~  135 (282)
T 3qhy_B           64 GVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTTV  135 (282)
T ss_dssp             CCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTSC
T ss_pred             CEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCCC
Confidence            4666666543  23443 4 899999976543211111111245777766543   334445 99999998765433322


Q ss_pred             eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCC
Q 018293          204 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  283 (358)
Q Consensus       204 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg  283 (358)
                      .......|..++.-.   ...++-. ||.|+.|-........     .+    ..-...|..++....  ..++.  .||
T Consensus       136 ~~~~~~~i~~i~~G~---~~~~~l~-~G~v~~wG~n~~gqlg-----~p----~~~~~~v~~i~~G~~--hs~al--~~G  198 (282)
T 3qhy_B          136 PAEAQSGVTALDGGV---YTALAVK-NGGVIAWGDNYFGQTT-----VP----AEAQSGVDDVAGGIF--HSLAL--KDG  198 (282)
T ss_dssp             CGGGGSSEEEEEECS---SEEEEEE-TTEEEEEECCTTSTTS-----CC----GGGGSSEEEEEECSS--EEEEE--ETT
T ss_pred             CccCCCCeEEEEccc---CEEEEEE-CCEEEEecCCCCCCCC-----Cc----eecCCCeEEEEecCC--EEEEE--ECC
Confidence            223345677776543   2333334 7999999876542211     00    111345777776643  34444  599


Q ss_pred             cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          284 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       284 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      .|+.|-........+ .. .....|..++......  ++..  ||.|+.|-.....
T Consensus       199 ~v~~wG~n~~gqlg~-p~-~~~~~v~~i~~G~~h~--~al~--~g~v~~wG~n~~g  248 (282)
T 3qhy_B          199 KVIAWGDNRYKQTTV-PT-EALSGVSAIASGEWYS--LALK--NGKVIAWGSSRTA  248 (282)
T ss_dssp             EEEEEECCTTSTTCC-CG-GGGSSCCEEEECSSCE--EEEE--TTEEEEESTTCCC
T ss_pred             eEEEEECCCCCCCCC-Cc-ccCCCceEEEcCCCEE--EEEE--CCEEEEecCCCCc
Confidence            999997654321111 00 1123466666554432  3333  8999999765543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=89.64  E-value=10  Score=33.50  Aligned_cols=261  Identities=10%  Similarity=0.088  Sum_probs=131.6

Q ss_pred             EEecCCCCeEEEEEcccccCcCceeecCCcccc-------cccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           68 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE-------KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        68 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      +.+|+..|.|+|+-+.+++.+..+.++...+..       .+.....    ......-..|--.++--.=.-+ +++|+.
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~----~~~~~~gD~HHp~~S~tdg~yD-Grylfi  147 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGD----SAKFLNGDCHHPHISMTDGKYD-GKYLFI  147 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGG----GGGCCCCCCCCCEEEEETTEEE-EEEEEE
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhc----CCCccCCCcCCCcccccCCeee-eEEEEE
Confidence            678999999999999998887766665432221       1100000    0000001112111111111123 446666


Q ss_pred             EE-cCCeEEEEECCCCceeeeec-ccccceeeEEEc--CCCCcEEEEEeC-------CCcE---------EEEEcccCCC
Q 018293          141 AS-ADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWN--HHSPQILLSGSF-------DRSV---------VMKDARISTH  200 (358)
Q Consensus       141 ~~-~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~l~~~~~-------dg~i---------~i~d~~~~~~  200 (358)
                      -. .+..|-..+++..++-+.+. .....+..++|.  |.. .+++++++       ||..         .+|..-....
T Consensus       148 Ndkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T-~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~t  226 (638)
T 3sbq_A          148 NDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHT-KYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAET  226 (638)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBC-CEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTT
T ss_pred             ecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCc-cEEEecceeeccCCCCCcccccCChhhceEEEEEcCCc
Confidence            55 45678888888887655443 244567788886  555 56666653       3321         1111101111


Q ss_pred             cccee--eecCCeeeEEEcCCCCCeEEEEecC---------------CeEEEEEcccC-------CCCCCC---------
Q 018293          201 SGFKW--AVAADVESLAWDPHAEHSFVVSLED---------------GTIKGFDIRTA-------KSDPDS---------  247 (358)
Q Consensus       201 ~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~d---------------g~i~i~d~~~~-------~~~~~~---------  247 (358)
                      ....+  ........+...+++. +.++.+.+               ..+.++++..-       +.....         
T Consensus       227 m~v~~Qv~v~gnld~~~~~~~g~-~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~  305 (638)
T 3sbq_A          227 MEMAFQVIVDGNLDNTDADYTGR-FAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDG  305 (638)
T ss_dssp             CSEEEEEEESSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred             cEEEEEEEcCCChhhcCCCCCCC-EEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcc
Confidence            11011  1122233344445443 33333221               12455554321       100000         


Q ss_pred             C-----CCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC------C---c--eeeEecCCCCceeEEE
Q 018293          248 T-----SQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN------Q---P--SCIASRNPKAGAVFSV  311 (358)
Q Consensus       248 ~-----~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~------~---~--~~~~~~~~~~~~v~~~  311 (358)
                      .     .....+.+ .-......+..+|||...+++|-.+.++.++|++..      +   +  ....+.. -.-.....
T Consensus       306 ~~~~~~~~~~~~~i-P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt  383 (638)
T 3sbq_A          306 RKKDGKDSKFTRYV-PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHT  383 (638)
T ss_dssp             SCBTTBCCSSEEEE-EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEE
T ss_pred             ccccccCCceEEEE-eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEE
Confidence            0     00112222 223344678999999555555666889999999742      1   1  1122222 23346678


Q ss_pred             EEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          312 AFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       312 ~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      +|.++|. .+.+--.|..|.-|++...
T Consensus       384 ~Fd~~G~-aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          384 TFDGRGN-AYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             EECSSSE-EEEEETTTTEEEEEEHHHH
T ss_pred             EECCCCc-eEeeeeecceEEEEeccHH
Confidence            9999995 6888889999999999753

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=88.67  E-value=11  Score=36.03  Aligned_cols=38  Identities=21%  Similarity=0.471  Sum_probs=31.8

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL  161 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  161 (358)
                      ..+.++...++ ..++++-+.|+++|+|++.+++++.+.
T Consensus       236 ~~~~~~~~~~~-~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          236 NTIISMIFLST-YNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             TCEEEEEEETT-TTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeecCC-CcEEEEEECCCEEEEEECCCCCeEeee
Confidence            35677777777 669999999999999999999887765

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=87.98  E-value=16  Score=34.09  Aligned_cols=152  Identities=14%  Similarity=0.088  Sum_probs=75.8

Q ss_pred             ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC--CCccceee----ecCCeeeEEEcCCCCCeEEEEecCCe----EE
Q 018293          165 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGFKWA----VAADVESLAWDPHAEHSFVVSLEDGT----IK  234 (358)
Q Consensus       165 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~dg~----i~  234 (358)
                      ...|.+|+++|..+..++++...+.|...+=...  +.+.....    ....+.+++++|.+...++++..+..    -.
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~   93 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA   93 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence            4579999999987677888887777655431111  01110000    12468999999865556666543211    23


Q ss_pred             EEEcccCCCCCCCCCCCccEEEee---------cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC-CCceeeEec-C-
Q 018293          235 GFDIRTAKSDPDSTSQQSSFTLHA---------HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN-NQPSCIASR-N-  302 (358)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~-~-  302 (358)
                      ||--...-        +....+..         ....+..++++|..+..++.+...+.|  |-... ++.-..... . 
T Consensus        94 v~~S~DgG--------~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~  163 (789)
T 1sqj_A           94 FYVSEDRG--------QSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPD  163 (789)
T ss_dssp             EEEESSTT--------SEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCC
T ss_pred             EEEECCCC--------CcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCcc
Confidence            34333221        11111111         011345688888655677777644443  33322 321111111 0 


Q ss_pred             --CCCceeEEEEEcCCC-CeEEEEEccC
Q 018293          303 --PKAGAVFSVAFSEDS-PFVLAIGGSK  327 (358)
Q Consensus       303 --~~~~~v~~~~~~~~~-~~~l~~~~~d  327 (358)
                        .....+..+.++|.. ..+++ +..+
T Consensus       164 ~~~~~~~~~~i~~~p~~~~~~~~-~~~~  190 (789)
T 1sqj_A          164 AFTNGIGYTSVIFDPERNGTIYA-SATA  190 (789)
T ss_dssp             CCSTTTCEEEEEECTTSTTCEEE-EESS
T ss_pred             ccCCCCCeEEEEECCCCCCEEEE-EEcC
Confidence              112457888998853 33444 4433

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=83.74  E-value=23  Score=31.43  Aligned_cols=86  Identities=9%  Similarity=-0.027  Sum_probs=56.1

Q ss_pred             eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCC--CC-CCCCc-cEEEeecCCceeEEEecCCCCcEEEEEe
Q 018293          205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP--DS-TSQQS-SFTLHAHDKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~--~~-~~~~~-~~~~~~~~~~i~~i~~~~~~~~~l~~~~  280 (358)
                      .........+..+|++...++.|--+.++.++|+++.....  .. ..... ...... .......+|.++| +...+--
T Consensus       319 iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G-~aYTtlf  396 (638)
T 3sbq_A          319 VPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRG-NAYTTLF  396 (638)
T ss_dssp             EEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSS-EEEEEET
T ss_pred             EeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCC-ceEeeee
Confidence            34455677889999888777777789999999998531100  00 00011 112222 2345678999988 6666667


Q ss_pred             CCCcEEEEecCC
Q 018293          281 TDKMVKLWDLSN  292 (358)
Q Consensus       281 ~dg~i~i~d~~~  292 (358)
                      -|..|.-|++..
T Consensus       397 idSqvvkWni~~  408 (638)
T 3sbq_A          397 IDSQVVKWNMEE  408 (638)
T ss_dssp             TTTEEEEEEHHH
T ss_pred             ecceEEEEeccH
Confidence            899999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-15
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.001
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.002
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.6 bits (205), Expect = 1e-18
 Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 14/162 (8%)

Query: 130 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 189
                  +  S + D   K+WDV  G C  T   H   + A+ +  +      +GS D +
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDAT 249

Query: 190 VV--MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS 247
                  A     +     +   + S+++        +   +D     +D   A      
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL-LLAGYDDFNCNVWDALKADR---- 304

Query: 248 TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 289
                +  L  HD  V  +         +ATGS D  +K+W+
Sbjct: 305 -----AGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.9 bits (159), Expect = 1e-12
 Identities = 48/251 (19%), Positives = 77/251 (30%), Gaps = 37/251 (14%)

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   +  + W  + R +L SAS D ++ IWD         +   +  V   A+      +
Sbjct: 54  HLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

Query: 181 LLSGSFDRSVVMK-DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 239
              G  +   +     R       +                ++  V S  D T   +DI 
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172

Query: 240 ----------------------------TAKSDP-----DSTSQQSSFTLHAHDKAVCTI 266
                                       +   D      D        T   H+  +  I
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232

Query: 267 SYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS 326
            + P   N  ATGS D   +L+DL  +Q     S +     + SV+FS+    +LA G  
Sbjct: 233 CFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYD 290

Query: 327 KGKLEIWDTLS 337
                +WD L 
Sbjct: 291 DFNCNVWDALK 301

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.8 bits (138), Expect = 5e-10
 Identities = 19/170 (11%), Positives = 48/170 (28%), Gaps = 19/170 (11%)

Query: 38  YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQP------- 90
           +                    L           G+ + + ++WD+      Q        
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228

Query: 91  ----------HVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 140
                     +    G D+   +    +  +  + Y   +    +  ++++K    +L +
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-GRLLLA 287

Query: 141 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 190
              D    +WD         L  H ++V  +         + +GS+D  +
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFL 336

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.1 bits (105), Expect = 6e-06
 Identities = 28/213 (13%), Positives = 64/213 (30%), Gaps = 40/213 (18%)

Query: 156 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 215
           +   TL  H  K+ A+ W     ++L+S S D  +++ D+  +         ++ V + A
Sbjct: 46  RTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC----------- 264
           + P   +       D     ++++T + +   + + +  T +                  
Sbjct: 105 YAPSGNY-VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163

Query: 265 ------------------------TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 300
                                             L  +G+ D   KLWD+      C  +
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM--CRQT 221

Query: 301 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 333
                  + ++ F  +     A G       ++
Sbjct: 222 FTGHESDINAICFFPNGNA-FATGSDDATCRLF 253

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 17/126 (13%), Positives = 31/126 (24%), Gaps = 32/126 (25%)

Query: 30  SDGGDPNLYVHHHIIIPAFPLCMAWLDCP----LKDREKGNFMAVGSMEPAIEIWDLDVI 85
           +   D    +                       +   + G  +  G  +    +WD    
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302

Query: 86  DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 145
           D      +L G                        H + V  L    +    +A+ S D 
Sbjct: 303 DRAG---VLAG------------------------HDNRVSCLGVTDD-GMAVATGSWDS 334

Query: 146 QVKIWD 151
            +KIW+
Sbjct: 335 FLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (191), Expect = 7e-17
 Identities = 56/303 (18%), Positives = 103/303 (33%), Gaps = 47/303 (15%)

Query: 65  GNFMAVGSMEPAIEIWDLD--------------VIDEVQPHVILGGIDEEKKKKKSKKGK 110
            + M   S +  I++WD +              V D    H                   
Sbjct: 29  FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 88

Query: 111 KSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQA 170
           +     +     D  +         + + SAS DK +K+W+V  G C  T   H + V+ 
Sbjct: 89  QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 148

Query: 171 VAWNHHSPQILLSGSFDRSVVMKD-------ARISTHSGFKWAVAADVES---------- 213
           V  N     ++ S S D++V +         A +  H      ++   ES          
Sbjct: 149 VRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 207

Query: 214 --LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 271
                        +    D TIK +D+ T              TL  HD  V  + ++  
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC---------LMTLVGHDNWVRGVLFHS- 257

Query: 272 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE 331
               + + + DK +++WD  N +  C+ + N     V S+ F + +P+ +  G     ++
Sbjct: 258 GGKFILSCADDKTLRVWDYKNKR--CMKTLNAHEHFVTSLDFHKTAPY-VVTGSVDQTVK 314

Query: 332 IWD 334
           +W+
Sbjct: 315 VWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.5 bits (163), Expect = 3e-13
 Identities = 40/206 (19%), Positives = 77/206 (37%), Gaps = 15/206 (7%)

Query: 115 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN 174
           KY    H   V  + ++    +++ SAS D  +K+WD   G    TL+ HTD VQ ++++
Sbjct: 10  KYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68

Query: 175 HHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 234
           H    +    +     +                                 V +  D TIK
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV--SIMPNGDHIVSASRDKTIK 126

Query: 235 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 294
            ++++T              T   H + V  +  N     L+A+ S D+ V++W ++  +
Sbjct: 127 MWEVQT---------GYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKE 176

Query: 295 PSCIASRNPKAGAVFSVAFSEDSPFV 320
             C A        V  ++++ +S + 
Sbjct: 177 --CKAELREHRHVVECISWAPESSYS 200

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (177), Expect = 3e-15
 Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 9/150 (6%)

Query: 140 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 199
           SAS D+ +K+W+ +  +   TL  H    + +A   +  ++++SGS D ++ + D     
Sbjct: 153 SASGDRTIKVWNTSTCEFVRTLNGHK---RGIACLQYRDRLVVSGSSDNTIRLWDIECGA 209

Query: 200 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH 259
                  +    E +          V    DG IK +D+  A             TL  H
Sbjct: 210 C---LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH 266

Query: 260 DKAVCTISYNPLVPNLLATGSTDKMVKLWD 289
              V  + ++      + + S D  + +WD
Sbjct: 267 SGRVFRLQFD---EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 2e-11
 Identities = 35/216 (16%), Positives = 68/216 (31%), Gaps = 23/216 (10%)

Query: 120 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQ 179
             +  V  L ++      + S   D  +KIWD    +C   L  HT  V  + ++     
Sbjct: 13  ETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI- 68

Query: 180 ILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 239
                    S                 +    E++          V   +D +I  +D+ 
Sbjct: 69  -----ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123

Query: 240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 299
                   T       L  H  AV  + ++      + + S D+ +K+W+ S  +     
Sbjct: 124 ------SPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTL 174

Query: 300 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 335
           +     G    +A  +    ++  G S   + +WD 
Sbjct: 175 N-----GHKRGIACLQYRDRLVVSGSSDNTIRLWDI 205

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 130 WNKEFRNILASASADKQVKIWDVAAG---------KCNLTLEHHTDKVQAVAWNHHSPQI 180
             +     + S + D ++K+WD+ A           C  TL  H+ +V  + ++      
Sbjct: 223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQ 279

Query: 181 LLSGSFDRSV 190
           ++S S D ++
Sbjct: 280 IVSSSHDDTI 289

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWD 151
           H+  V  L +++     + S+S D  + IWD
Sbjct: 266 HSGRVFRLQFDE---FQIVSSSHDDTILIWD 293

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (175), Expect = 1e-14
 Identities = 49/212 (23%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 130 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 189
             +     + S + D  VK+WD     C  TL+ HT++V            ++SGS D S
Sbjct: 142 CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY---SLQFDGIHVVSGSLDTS 198

Query: 190 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS 249
           + + D              +    +    +     V    D T+K +DI+T         
Sbjct: 199 IRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKT--------- 246

Query: 250 QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC---IASRNPKAG 306
            Q   TL   +K    ++      N + T S D  VKLWDL   +              G
Sbjct: 247 GQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG 306

Query: 307 AVFSVAFSEDSPFVLAIGGSKG----KLEIWD 334
            V+ +  S     V A+G   G    KL + D
Sbjct: 307 VVWRIRASNTKL-VCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (170), Expect = 4e-14
 Identities = 52/267 (19%), Positives = 89/267 (33%), Gaps = 62/267 (23%)

Query: 107 KKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT 165
           ++G+  S K  KG H D V+  L +     N + S S D  +K+W    GKC  TL  HT
Sbjct: 2   RRGELKSPKVLKG-HDDHVITCLQFCG---NRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57

Query: 166 DKVQAVAWN-------------------------------------HHSPQILLSGSFDR 188
             V +                                         H   + ++SGS D 
Sbjct: 58  GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117

Query: 189 SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST 248
           ++ + D              A V       +     V    D  +K +D  T        
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAV---RCVQYDGRRVVSGAYDFMVKVWDPET-------- 166

Query: 249 SQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV 308
            +    TL  H   V ++ ++      + +GS D  +++WD+      CI +        
Sbjct: 167 -ETCLHTLQGHTNRVYSLQFD---GIHVVSGSLDTSIRVWDVETGN--CIHTLTGHQSLT 220

Query: 309 FSVAFSEDSPFVLAIGGSKGKLEIWDT 335
             +   ++   +L  G +   ++IWD 
Sbjct: 221 SGMELKDN---ILVSGNADSTVKIWDI 244

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 1e-11
 Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 12/162 (7%)

Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195
             + S S D  +++WDV  G C  TL  H      +        IL+SG+ D +V + D 
Sbjct: 188 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL---KDNILVSGNADSTVKIWDI 244

Query: 196 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 255
           +                ++      ++  + S +DGT+K +D++T +   +  + +S   
Sbjct: 245 KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES--- 301

Query: 256 LHAHDKAVCTISYNPLVPNLLATGSTDK----MVKLWDLSNN 293
                  V  I  +     + A GS +      + + D   +
Sbjct: 302 -GGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 36/177 (20%)

Query: 65  GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 124
           G  +  GS++ +I +WD++  + +                                H   
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGNCIHTLT---------------------------GHQSL 219

Query: 125 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 184
             G+       NIL S +AD  VKIWD+  G+C  TL+       AV     +   +++ 
Sbjct: 220 TSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 276

Query: 185 SFDRSVVMKDARISTH-----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF 236
           S D +V + D +         +         V  +           V   +GT +  
Sbjct: 277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV-CAVGSRNGTEETK 332

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (166), Expect = 2e-13
 Identities = 36/185 (19%), Positives = 68/185 (36%), Gaps = 35/185 (18%)

Query: 130 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-------HTDKVQAVAWNHHSPQILL 182
            +      +A+ S D+ V++WD   G     L+        H D V +V +     Q ++
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVV 270

Query: 183 SGSFDRSVVMKDARISTHSGFKWA------------VAADVESLAWDPHAEHSFVVSLED 230
           SGS DRSV + + + + +                      V S+A   + E+  +   +D
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKD 329

Query: 231 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP-----NLLATGSTDKMV 285
             +  +D ++               L  H  +V +++           N+ ATGS D   
Sbjct: 330 RGVLFWDKKSGNP---------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 380

Query: 286 KLWDL 290
           ++W  
Sbjct: 381 RIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (152), Expect = 1e-11
 Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 19/187 (10%)

Query: 163 HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA-------RISTHSGFKWAVAADVESLA 215
              D V  VA +    + + +GS DR+V + D+       R+ + +         V S+ 
Sbjct: 202 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 261

Query: 216 WDPHAEHSFVVSLEDGTIKGFDIRTAKS---DPDSTSQQSSFTLHAHDKAVCTISYNPLV 272
           +    +   V    D ++K ++++ A +        S     T   H   V +++     
Sbjct: 262 FTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN- 319

Query: 273 PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF-----VLAIGGSK 327
              + +GS D+ V  WD  +     +        +V SVA +  S       V A G   
Sbjct: 320 DEYILSGSKDRGVLFWDKKSGN--PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377

Query: 328 GKLEIWD 334
            K  IW 
Sbjct: 378 CKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.5 bits (137), Expect = 8e-10
 Identities = 41/285 (14%), Positives = 83/285 (29%), Gaps = 74/285 (25%)

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH----------------- 163
           HT  V  + ++ +    LA+   +K  +++ V+ G     L                   
Sbjct: 61  HTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 164 -HTDKVQAVAWNHHSPQILLSG-------------------------------------- 184
                +++V ++     +                                          
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 185 --SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 242
                   V      +       ++   V ++A  P           D  ++ +D  T  
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 243 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP------- 295
                 S+  S T   H  +V ++ +       + +GS D+ VKLW+L N          
Sbjct: 239 LVERLDSENESGT--GHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 296 ---SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 337
              +C  +       V SVA +++  ++L+ G     +  WD  S
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILS-GSKDRGVLFWDKKS 339

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (129), Expect = 8e-09
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 21/131 (16%)

Query: 65  GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 124
           G  +  GS++ ++++W+L                    K  SK     + +     H D 
Sbjct: 266 GQSVVSGSLDRSVKLWNLQ---------------NANNKSDSKTPNSGTCEVTYIGHKDF 310

Query: 125 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN-----HHSPQ 179
           VL +A  +     + S S D+ V  WD  +G   L L+ H + V +VA            
Sbjct: 311 VLSVATTQN-DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 369

Query: 180 ILLSGSFDRSV 190
           +  +GS D   
Sbjct: 370 VFATGSGDCKA 380

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.0 bits (151), Expect = 1e-11
 Identities = 31/190 (16%), Positives = 68/190 (35%), Gaps = 16/190 (8%)

Query: 121 HTDSVLG-LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQ 179
           H  SV+  L +     N + + + DK ++++D    K  L L  H   V A+ + H    
Sbjct: 11  HMTSVITCLQFED---NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-I 66

Query: 180 ILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 239
           ++   +     V    +      F+   +        +       V    D T+  + + 
Sbjct: 67  LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126

Query: 240 TAKSDPDS-----------TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 288
              S PD            T +++ + +      + ++       N++ +GS D  + +W
Sbjct: 127 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW 186

Query: 289 DLSNNQPSCI 298
           D++  +   I
Sbjct: 187 DVAQMKCLYI 196

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 3e-06
 Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQ 179
           H  ++  +       NIL S S + Q  I+++ +GK  +  +    D++ +V +   +  
Sbjct: 280 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-- 336

Query: 180 ILLSGSFDRSVVMKD 194
           ++ +   D    ++ 
Sbjct: 337 LVAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 46/297 (15%), Positives = 86/297 (28%), Gaps = 24/297 (8%)

Query: 38  YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGI 97
                                + + +   ++  GS +  + +W L     V  H      
Sbjct: 81  IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH------ 134

Query: 98  DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC 157
             E+              Y  G     +  +       NI+ S S D  + +WDVA  KC
Sbjct: 135 -GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC 193

Query: 158 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 217
              L  HTD++ +  ++H   +              D  I         +   ++     
Sbjct: 194 LYILSGHTDRIYSTIYDHERKRC--------ISASMDTTIRIWDLENGELMYTLQGHTAL 245

Query: 218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 277
                     L              S     +   S     H   +  I+   +  N+L 
Sbjct: 246 VGLLRLSDKFLVSA-------AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 298

Query: 278 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
           +GS +    +++L + +    A+    A  ++SV F   +         +  LEI D
Sbjct: 299 SGS-ENQFNIYNLRSGKL-VHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 353

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 5e-11
 Identities = 25/218 (11%), Positives = 64/218 (29%), Gaps = 9/218 (4%)

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH---HTDKVQAVAWNHHS 177
             D +  +      +++L   S D  + ++       N+ L     +   +    +  ++
Sbjct: 10  PKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 178 PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 237
              +  G+    ++  D   S          A++       + +   + +  DG I+  D
Sbjct: 69  DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128

Query: 238 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-S 296
            R       +    +      + K    I       + L  G  +  V+ + L   +  +
Sbjct: 129 PRNYGDGVIAVKNLN----SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184

Query: 297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
                +     +  VA         A     G++ +  
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 5e-08
 Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC-IASRNPKAGAVFSVAF 313
              A    +  I   P   +LL   S D  + ++       +  +         +    F
Sbjct: 6   IEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 314 SEDSPFVLAIGGSKGKLEIW 333
            +++   + +G  +G++   
Sbjct: 65  IDNTDLQIYVGTVQGEILKV 84

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 30/289 (10%), Positives = 77/289 (26%), Gaps = 49/289 (16%)

Query: 65  GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 124
            + + + S + ++ ++  D                           K+    +   +   
Sbjct: 23  KSLLLITSWDGSLTVYKFD------------------------IQAKNVDLLQSLRYKHP 58

Query: 125 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 184
           +L   +       +   +   ++   D+        L ++   +       +    L++ 
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118

Query: 185 SFDRSVVMKDAR-----ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 239
           S+D  + + D R     +                +          +V + +  ++ F + 
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178

Query: 240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 299
             +          +         +  ++  P      A  S D  V +    +      +
Sbjct: 179 LCE------DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232

Query: 300 SRNPK-------------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 335
           S+                A  V S+ FS    F L   GS G +  W+ 
Sbjct: 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWNL 280

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 18/149 (12%), Positives = 41/149 (27%), Gaps = 15/149 (10%)

Query: 51  CMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGK 110
               +       ++    A  S++  + +   D   +                 K    +
Sbjct: 192 LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY------------NSSKRFAFR 239

Query: 111 KSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQA 170
              +  K  +    V  + ++      L +A +D  +  W++   K         ++   
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSV 297

Query: 171 VAWNHHSPQILLSGSFDRSVVMKDARIST 199
           V     S  IL   + D +     A   T
Sbjct: 298 VKI-ACSDNILCLATSDDTFKTNAAIDQT 325

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 11/129 (8%)

Query: 215 AWDPHAEHSFVVSLEDGTIK------GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 268
           A  P  +  +  S  DG +         D   +         + +         V +I +
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259

Query: 269 NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 328
           +P     L T  +D ++  W+L   +         K      V  +      L +  S  
Sbjct: 260 SP-RHKFLYTAGSDGIISCWNLQTRKKIK---NFAKFNEDSVVKIACSDNI-LCLATSDD 314

Query: 329 KLEIWDTLS 337
             +    + 
Sbjct: 315 TFKTNAAID 323

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 110 KKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ 169
            +  IK     + DSV+ +A +    NIL  A++D   K         + T+E +   + 
Sbjct: 282 TRKKIKNFAKFNEDSVVKIACS---DNILCLATSDDTFKTN----AAIDQTIELNASSIY 334

Query: 170 AVAWNHHSP 178
            + +++ +P
Sbjct: 335 II-FDYENP 342

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.5 bits (142), Expect = 2e-10
 Identities = 28/180 (15%), Positives = 51/180 (28%), Gaps = 11/180 (6%)

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSP 178
             + +   AWNK+ R  +A    + +V I++ +  K      L+ H  +V  V W   S 
Sbjct: 6   LVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS- 63

Query: 179 QILLSGSFDRSV-VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 237
             +++   DR+  V      +                      E  F V      I    
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 238 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 297
                             +    ++            LLA GS D   +++     +   
Sbjct: 124 FEQEN------DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE 177

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 316
               + +   ++N      +A    +  V +++ S N+   +       G V  V ++ D
Sbjct: 4   SFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 317 SPFVLAIGGSKGKLEIWD 334
           S   +   G+     +W 
Sbjct: 63  SNR-IVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 43/307 (14%), Positives = 85/307 (27%), Gaps = 46/307 (14%)

Query: 65  GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 124
              +A+      + I++                           G K    ++   H   
Sbjct: 19  RTQIAICPNNHEVHIYEKS-------------------------GNKWVQVHELKEHNGQ 53

Query: 125 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILL-- 182
           V G+ W  +  N + +   D+   +W +       TL        A        +     
Sbjct: 54  VTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAV 112

Query: 183 ---SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 239
              S         ++         K  + + V SL W P++      S  D   + F   
Sbjct: 113 GSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS-CDFKCRIFSAY 171

Query: 240 TAKSDPD---------STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 290
             + +               +  F   +    V  + ++    + +A  S D  V L D 
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADA 230

Query: 291 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 350
                  +A+   +   + +V F  +S  V    G      ++   S AG  +   +   
Sbjct: 231 DKKM--AVATLASETLPLLAVTFITESSLV--AAGHDCFPVLFTYDSAAGKLSFGGRLDV 286

Query: 351 PKKPQSV 357
           PK+    
Sbjct: 287 PKQSSQR 293

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 21/180 (11%)

Query: 120 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQ 179
           S    V G+ ++    + +A  S D  V + D        TL   T  + AV +   S  
Sbjct: 199 SSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES-S 256

Query: 180 ILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW--DPHAEHSFVVSLEDGTIKGFD 237
           ++ +G     V+           F +  AA   S     D   + S          +  D
Sbjct: 257 LVAAGHDCFPVL-----------FTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD 305

Query: 238 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP---LVPNLLATGSTDKMVKLWDLSNNQ 294
            + +     +           H  +V  IS         +   T   D  + +WD+ + +
Sbjct: 306 KKASSEGSAAAGAG---LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP-----QILLSGSFDRSV 190
           +++A+   D    ++   +    L+     D  +  +    +       +    S + S 
Sbjct: 256 SLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA 314

Query: 191 VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS 243
                  S H      ++     L+        F  +  DG +  +D+R+ +S
Sbjct: 315 AAGAGLDSLHKNSVSQISV----LSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 6e-09
 Identities = 41/333 (12%), Positives = 94/333 (28%), Gaps = 48/333 (14%)

Query: 24  VYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD 83
           V+  +  D  +P    + H +  +    +  L    +D  +   +A  S    +  + + 
Sbjct: 38  VWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRIT 97

Query: 84  VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 143
                         ++E KK   +K        KK S      G + ++   + L +   
Sbjct: 98  R-------------EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV 144

Query: 144 DKQVKIWDVAAGKCN------------------LTLEHHTDKVQAVAWNHHSPQILLSGS 185
                IW                           +    +    +V  +     ++ +G 
Sbjct: 145 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGF 202

Query: 186 FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL-----EDGTIKGFDI-- 238
            + +V + +           +  + + +       + S   SL     +  +     +  
Sbjct: 203 NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE 262

Query: 239 -----RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 293
                R       + S Q+S    AH   V ++S+N      L +   D  ++ WD+   
Sbjct: 263 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTK 321

Query: 294 QPSCI--ASRNPKAGAVFSVAFSEDSPFVLAIG 324
           +         +        +A  E    +   G
Sbjct: 322 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 32/240 (13%), Positives = 67/240 (27%), Gaps = 51/240 (21%)

Query: 65  GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 124
            +F    S +  +++WD  ++D   P                 K     +      H D 
Sbjct: 24  NSFTVSCSGDGYLKVWDNKLLDNENPKD---------------KSYSHFVHKSGLHHVDV 68

Query: 125 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 184
           +  +  +     ++A+ S    +  + +        +      +       HS       
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS------- 121

Query: 185 SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD 244
                               WA+       + D    H  V +   GT   +       +
Sbjct: 122 -------------------FWALKW---GASNDRLLSHRLVATDVKGTTYIWKFHPFADE 159

Query: 245 PDSTSQQSSFTLHAHDKAVCTISYNPLV-------PNLLATGSTDKMVKLWDLSNNQPSC 297
            +S +   S TL         ++ +            L+ATG  +  V++ +LS  +P  
Sbjct: 160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLY 219

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 8e-07
 Identities = 29/232 (12%), Positives = 61/232 (26%), Gaps = 40/232 (17%)

Query: 160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA-------------RISTHSGFKWA 206
             + H   + +V+         +S S D  + + D                  H      
Sbjct: 9   AGKAHDADIFSVSA---CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65

Query: 207 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT---AKSDPDSTSQQSSFTLHAHDKAV 263
           V   ++++  D         +   G +  + I      K             +  H    
Sbjct: 66  VDV-LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 264 CTISY--NPLVPNLLATGSTDKMVKLWDLSNNQ----------------PSCIASRNPKA 305
                  + L+ + L          +W                         + S    +
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184

Query: 306 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKKPQSV 357
               SV  SE    ++A G + G ++I +  +   + N  S++S      S+
Sbjct: 185 QFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 6e-05
 Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 10/189 (5%)

Query: 41  HHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE 100
             + I          +   +     N  ++ S++ + +   L +  +      +   + E
Sbjct: 205 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 264

Query: 101 KKK---KKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC 157
             +     S     S     + +H+  V+ L++N      L SA  D +++ WDV   + 
Sbjct: 265 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKER 323

Query: 158 NLTLEHHTDKVQ----AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADV 211
             TL  H D ++     +A + H   +   G FD   + K  R    +            
Sbjct: 324 ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD 383

Query: 212 ESLAWDPHA 220
            S+ W   A
Sbjct: 384 RSIRWFREA 392

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.1 bits (125), Expect = 1e-08
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHH 176
           H  ++  L+ + +    L SA A+  +  WD++ G  N    + H   +  +     
Sbjct: 11  HNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.7 bits (98), Expect = 4e-05
 Identities = 33/276 (11%), Positives = 72/276 (26%), Gaps = 9/276 (3%)

Query: 65  GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG----IDEEKKKKKSKKGKKSSIKYKKGS 120
           G  +     E  I  WD+     +   V        I   K   K      S   + K  
Sbjct: 24  GKTLFSADAEGHINSWDIS--TGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV 81

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
                   +       + +           D+A   C   +  ++          ++   
Sbjct: 82  PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSC 141

Query: 181 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 240
           +   +  + V +       H       +         P    S   S     +   D   
Sbjct: 142 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 201

Query: 241 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL--LATGSTDKMVKLWDLSNNQPSCI 298
                   +       ++       ++     P+   LATGS D  V +W+++      I
Sbjct: 202 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 261

Query: 299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
             +   A +  +     +   +++  G    ++ W+
Sbjct: 262 IIKGAHAMSSVNSVIWLNETTIVS-AGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 1e-04
 Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 313
             + H+KA+  +S +      L +   +  +  WD+S    + +         +  +  
Sbjct: 7   VRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHA-TMITGIKT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 17/120 (14%), Positives = 26/120 (21%), Gaps = 2/120 (1%)

Query: 33  GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHV 92
            +       +          +    P             S                   +
Sbjct: 180 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239

Query: 93  ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 152
             G +D         K     I  K      SV  + W  E    + SA  D  +K W+V
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE--TTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 9/119 (7%), Positives = 24/119 (20%), Gaps = 8/119 (6%)

Query: 173 WNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 232
            N+ +  +    S                   W       +                D +
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247

Query: 233 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 291
           +  +++                   AH  +             + +   D  +K W++ 
Sbjct: 248 VIVWNMNKPS-------DHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWNVP 298

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 17/214 (7%), Positives = 55/214 (25%), Gaps = 20/214 (9%)

Query: 129 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR 188
           A+    ++        + + ++D+   K       ++             + L   S+  
Sbjct: 143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP--AFDADSKNLYYLSYRS 200

Query: 189 SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK-------GFDIRTA 241
                D  +   S    +       +   P + +   +     T +           R++
Sbjct: 201 LDPSPDRVVLNFSFEVVS---KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSS 257

Query: 242 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 301
             + D    +    L +         +               ++  +D+   + + +   
Sbjct: 258 PINVDPGDYRMIIPLESSILIYSVPVHGEFA-AYYQGAPEKGVLLKYDVKTRKVTEVK-- 314

Query: 302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 335
                 +  +  S D    + +    GK+  +  
Sbjct: 315 ----NNLTDLRLSADRKT-VMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (96), Expect = 9e-05
 Identities = 10/164 (6%), Positives = 32/164 (19%), Gaps = 4/164 (2%)

Query: 130 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 189
                   L   S        D      +  +      +  +  + +  +++       +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244

Query: 190 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-ST 248
                  +   S        D       P      + S+          + A        
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRM--IIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK 302

Query: 249 SQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 292
               +  +      +  +  +      +     D  +  + L  
Sbjct: 303 YDVKTRKVTEVKNNLTDLRLSAD-RKTVMVRKDDGKIYTFPLEK 345

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.1 bits (120), Expect = 7e-08
 Identities = 19/55 (34%), Positives = 27/55 (49%)

Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 190
             +ASASADK +KIW+VA  K   T+   T           + Q L+S S +  +
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 305

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 3e-05
 Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 274 NLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI 332
             +A+ S DK +K+W+++  +    I            + +++ +   L    + G +  
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA---LVSISANGFINF 307

Query: 333 WD 334
            +
Sbjct: 308 VN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 11/89 (12%), Positives = 21/89 (23%), Gaps = 2/89 (2%)

Query: 136 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 195
           + +   +    V    V +         H+ +         S     SG    +V + D 
Sbjct: 30  DKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKT-SPSGYYCASGDVHGNVRIWDT 87

Query: 196 RISTHSGFKWAVAADVESLAWDPHAEHSF 224
             +TH                   +E   
Sbjct: 88  TQTTHILKTTIPVFSGPVKDISWDSESKR 116

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 9/75 (12%), Positives = 22/75 (29%), Gaps = 9/75 (12%)

Query: 216 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 275
                      +  D TIK +++ T K       +++       +     I +       
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKV------EKTIPVGTRIEDQQLGIIWTK---QA 295

Query: 276 LATGSTDKMVKLWDL 290
           L + S +  +   + 
Sbjct: 296 LVSISANGFINFVNP 310

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 3/70 (4%)

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 180
           H   VL L +         S   D  +  W    G      +     V +   +    + 
Sbjct: 264 HESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISVDD-KY 320

Query: 181 LLSGSFDRSV 190
           +++GS D+  
Sbjct: 321 IVTGSGDKKA 330

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 5/80 (6%)

Query: 257 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 316
           H H+  V ++ +         +   D ++  W          +  +    +V S   S D
Sbjct: 262 HLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVD 317

Query: 317 SPFVLAIGGSKGKLEIWDTL 336
             + +  G    K  +++ +
Sbjct: 318 DKY-IVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 10/91 (10%), Positives = 30/91 (32%), Gaps = 7/91 (7%)

Query: 120 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWN 174
           +H + V  +  +   R  + +      VK+WD++          L   +  + +++    
Sbjct: 49  NHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106

Query: 175 HHSPQILLSGSFDRSVVMKDARISTHSGFKW 205
                +++ G      +   A  +     + 
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 259 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN---QPSCIASRNPKAGAVFSVAFSE 315
           H + VC ++ +      + TG     VK+WD+S+     P        +   + S     
Sbjct: 50  HGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 316 DSPFVLAIGGSKGKLEIW 333
           D    L +GG    L IW
Sbjct: 108 DGCT-LIVGGEASTLSIW 124

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 12/115 (10%), Positives = 27/115 (23%), Gaps = 29/115 (25%)

Query: 38  YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGI 97
            +H +                LK    G +      +  +  W                 
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT--------------- 294

Query: 98  DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 152
                               +   + SVL    + +    + + S DK+  +++V
Sbjct: 295 -------------PYGASIFQSKESSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 7e-07
 Identities = 24/279 (8%), Positives = 70/279 (25%), Gaps = 49/279 (17%)

Query: 105 KSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR-NILASASADKQVKIWDVAAGKCNLTLEH 163
                K   +    G  +  V  + ++       L S     +V +W     K + ++E 
Sbjct: 46  DDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV 105

Query: 164 --------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 215
                       +  ++W+    ++ + G    +  +  +  S +S  + +  +   +  
Sbjct: 106 NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINAC 165

Query: 216 WDPHAEHSFVVSLEDGTIKGFDI------------RTAKSDPDSTSQQSSFTLHAHDKAV 263
               +     +++ D     F                 +       + S  +        
Sbjct: 166 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 225

Query: 264 CTISYNPLVP----------------------------NLLATGSTDKMVKLWDLSNNQP 295
                +                                   AT   D  +++WD++ ++ 
Sbjct: 226 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC 285

Query: 296 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
               + + +      V         +      G L  ++
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 6e-06
 Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 9/129 (6%)

Query: 164 HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS 223
               V+ V ++  S + +++   DR +   D +      +       V+   +      S
Sbjct: 204 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS 263

Query: 224 --FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 281
             F     D TI+ +D+ T+K           +TL         +         + + S 
Sbjct: 264 QKFATVGADATIRVWDVTTSK-------CVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316

Query: 282 DKMVKLWDL 290
           D  +  ++L
Sbjct: 317 DGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 6e-05
 Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 18/126 (14%)

Query: 112 SSIKYKK------GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE--- 162
           SSI  K+       +  +    L+++     I         V+  D    K    ++   
Sbjct: 1   SSISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG 60

Query: 163 HHTDKVQAVAWN-HHSPQILLSGSFDRSVVMKDARISTHSGFKW--------AVAADVES 213
           H +  V  V ++     Q L SG     V++        S             +A  +  
Sbjct: 61  HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 120

Query: 214 LAWDPH 219
           ++WD  
Sbjct: 121 ISWDFE 126

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 13/118 (11%)

Query: 209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 268
                L++DP          +   ++  D   +K  P        FT H     V T+ +
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQ-----FTGH-GSSVVTTVKF 71

Query: 269 NPLVP-NLLATGSTDKMVKLWDLSNNQPSCIASRNPKA------GAVFSVAFSEDSPF 319
           +P+     L +G     V +W  + ++ S     N K+      G +  +++  +   
Sbjct: 72  SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (102), Expect = 1e-05
 Identities = 33/269 (12%), Positives = 83/269 (30%), Gaps = 5/269 (1%)

Query: 68  MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG 127
           +  GS +  I  W    + +   ++I+   + + ++  S     +        H      
Sbjct: 24  LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQP 83

Query: 128 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 187
              +       A  + D  + I     G    ++  ++         ++    L  G+  
Sbjct: 84  KVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI 143

Query: 188 RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS 247
           +   + D  +S     K  + A    ++  P   +     +    +              
Sbjct: 144 QVFKLSDLEVSFD--LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW 201

Query: 248 TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA 307
             + S     +   A    +   +  +L+ATGS D  + ++ +       I + N     
Sbjct: 202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKALNAHKDG 260

Query: 308 VFSVAFSEDSPFVLAIGGSKGKLEIWDTL 336
           V ++ +   S   L   G+   ++ W+ +
Sbjct: 261 VNNLLWETPS--TLVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 2e-05
 Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS 177
           H   +  L  N      L S S D ++  W  ++       + H++ + ++  +   
Sbjct: 12  HNKGITALTVNP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ 58

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (95), Expect = 8e-05
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 12/66 (18%)

Query: 255 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 314
           T+  H+K +  ++ NPL      +GS D  +  W  S+            +  + S+  S
Sbjct: 8   TISGHNKGITALTVNPL-----ISGSYDGRIMEWSSSSMHQD-------HSNLIVSLDNS 55

Query: 315 EDSPFV 320
           +   + 
Sbjct: 56  KAQEYS 61

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 28/115 (24%)

Query: 38  YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGI 97
                                 ++  + + +A GS++  I I+ +               
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK-------------- 245

Query: 98  DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 152
                       +   I     +H D V  L W     + L S+ AD  +K W+V
Sbjct: 246 ------------RPMKIIKALNAHKDGVNNLLWETP--STLVSSGADACIKRWNV 286

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 11/118 (9%), Positives = 26/118 (22%), Gaps = 8/118 (6%)

Query: 127 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGS 185
           G A        +   +    + + DVA+     +                 +    +  +
Sbjct: 1   GPALKAG-HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN 59

Query: 186 FDRSVVMKDA------RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 237
               +   D         +  S     V   + S A  P  +  +        +    
Sbjct: 60  HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY 117

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 24/252 (9%), Positives = 57/252 (22%), Gaps = 33/252 (13%)

Query: 114 IKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH------HTDK 167
            K                 + R      +    +   D+   K                 
Sbjct: 31  YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRS 90

Query: 168 VQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWDPHAEHSFVV 226
           + + A +    ++  + +  + +             F  A   + + +   P     +++
Sbjct: 91  MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150

Query: 227 SL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC--------------------- 264
              +DG++        K D  +     +  L   ++                        
Sbjct: 151 RAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210

Query: 265 -TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAI 323
            TI+         AT          DL   +       +      F+   S   P  +  
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-LTELYFTGLRSPKDPNQIYG 269

Query: 324 GGSKGKLEIWDT 335
                +L  +D 
Sbjct: 270 VL--NRLAKYDL 279

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 12/113 (10%), Positives = 30/113 (26%), Gaps = 3/113 (2%)

Query: 130 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 189
             K+ +   A+A         D+  GK +        ++             + G  +R 
Sbjct: 215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRL 274

Query: 190 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 242
                 +          +      +A+D   +    +      +  F+  T +
Sbjct: 275 AKYDLKQRKLIKAAN--LDHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDTLE 324

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 13/162 (8%), Positives = 38/162 (23%), Gaps = 9/162 (5%)

Query: 135 RNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM 192
           R+ + + +   ++ + D         +T+                     + +   S+V 
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 193 KDAR-----ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG-FDIRTAKSDPD 246
            D                     +   A  P  +   +           F+++  +    
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 247 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 288
                S        + +  +++     + L     D  V   
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWAR-DGSKLYGLGRDLHVMDP 161

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 4/62 (6%), Positives = 12/62 (19%)

Query: 274 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 333
           + +   +    + + D        + +             +       A       L   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 334 DT 335
           D 
Sbjct: 62  DL 63

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 4/53 (7%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAW 173
              S   +  + +  + +    A   +  +D    +    ++   +   ++A 
Sbjct: 278 LPHSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLAS 329

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 9/83 (10%), Positives = 28/83 (33%)

Query: 275 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 334
           +       + + +W+L++     +       G V  +  S D  ++      + ++  + 
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 335 TLSDAGISNRFSKYSKPKKPQSV 357
              D G     ++ + P     +
Sbjct: 66  IAPDDGALTFAAESALPGSLTHI 88

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 3/58 (5%)

Query: 278 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 335
             S    + + D+++N+   + +  P          S D   V         + I DT
Sbjct: 7   ANSESDNISVIDVTSNK---VTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 25/139 (17%), Positives = 40/139 (28%), Gaps = 19/139 (13%)

Query: 205 WAVAADVESL----AWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH 259
           W V    E        D   E+ F V+L + G I   D  T +        ++       
Sbjct: 11  WKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYE-------IKTVLDTG-- 61

Query: 260 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS---CIASRNPKAGAVFSVAFSED 316
             AV     +      L     D  V + DL   +P+    I   +       S     +
Sbjct: 62  -YAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE 119

Query: 317 SPFVLAIGGSKGKLEIWDT 335
             + +A      +  I D 
Sbjct: 120 DKYAIAGAYWPPQYVIMDG 138

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.7 bits (84), Expect = 0.003
 Identities = 22/219 (10%), Positives = 48/219 (21%), Gaps = 59/219 (26%)

Query: 127 GLAWNKEFRNILA-SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS 185
               + +  N+ + +     Q+ + D +  +                             
Sbjct: 23  QQMNDWDLENLFSVTLRDAGQIALIDGSTYEIK--------------------------- 55

Query: 186 FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP 245
                      + T           V          + FV+   DG +   D+   +   
Sbjct: 56  ---------TVLDTGYA--------VHISRLSASGRYLFVIG-RDGKVNMIDLWMKEPTT 97

Query: 246 DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA 305
            +  +  S           +          +A         + D    +P  I S     
Sbjct: 98  VAEIKIGS----EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT 153

Query: 306 ---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 335
                      V ++  S   P  +      GK+ + D 
Sbjct: 154 YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.98
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.98
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.88
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.79
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.64
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.56
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.51
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.46
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.43
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.37
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.35
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.35
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.32
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.3
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.29
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.27
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.23
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.13
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.13
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.12
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.02
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.94
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.91
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.9
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.76
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.71
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.67
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.64
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.59
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.46
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.19
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.16
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.1
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.78
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.76
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.66
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.64
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.44
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.43
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.34
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.26
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.16
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.96
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.66
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.48
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.44
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.25
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.25
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.93
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.87
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.81
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.6
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.39
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.35
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.33
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	94.05
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.92
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.81
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.67
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	92.34
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	89.7
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.51
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	89.41
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	85.35
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	81.25

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.2e-42  Score=285.11  Aligned_cols=284  Identities=17%  Similarity=0.257  Sum_probs=223.8

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      |+++|+|+.|+.+. .+     .+++|+........++..|.    ..+.|++|       +|+|++||+|+.||.|+||
T Consensus        23 ~a~~~~g~~l~~~~-~~-----~v~i~~~~~~~~~~~~~~H~----~~v~~~~~-------sp~g~~latg~~dg~i~iw   85 (311)
T d1nr0a1          23 LGNTPAGDKIQYCN-GT-----SVYTVPVGSLTDTEIYTEHS----HQTTVAKT-------SPSGYYCASGDVHGNVRIW   85 (311)
T ss_dssp             CEECTTSSEEEEEE-TT-----EEEEEETTCSSCCEEECCCS----SCEEEEEE-------CTTSSEEEEEETTSEEEEE
T ss_pred             EEEcCCCCEEEEEe-CC-----EEEEEECCCCceeEEEcCCC----CCEEEEEE-------eCCCCeEeccccCceEeee
Confidence            57899999999884 44     68889887765556665553    33456666       8999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc--CCeEEEEECCCCcee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVKIWDVAAGKCN  158 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~  158 (358)
                      |+.+.....                         ...+.+|...|.+++|+|+ +++|++++.  +..+++|++++++..
T Consensus        86 d~~~~~~~~-------------------------~~~~~~~~~~v~~v~~s~d-~~~l~~~~~~~~~~~~v~~~~~~~~~  139 (311)
T d1nr0a1          86 DTTQTTHIL-------------------------KTTIPVFSGPVKDISWDSE-SKRIAAVGEGRERFGHVFLFDTGTSN  139 (311)
T ss_dssp             ESSSTTCCE-------------------------EEEEECSSSCEEEEEECTT-SCEEEEEECCSSCSEEEEETTTCCBC
T ss_pred             eeecccccc-------------------------ccccccccCcccccccccc-cccccccccccccccccccccccccc
Confidence            997644322                         1234579999999999999 668888875  456999999999999


Q ss_pred             eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293          159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  238 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~  238 (358)
                      ..+.+|...|++++|+|+++..+++|+.|+.|++||+++.+.......+...|.++.|+|+ ++++++++.||.|++||.
T Consensus       140 ~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~-~~~l~~~~~d~~v~~~d~  218 (311)
T d1nr0a1         140 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNG  218 (311)
T ss_dssp             BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET
T ss_pred             ccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcc-cccccccccccccccccc
Confidence            9999999999999999999667899999999999999988877767778899999999995 568999999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCC---ceeEEEEEcC
Q 018293          239 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA---GAVFSVAFSE  315 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~v~~~~~~~  315 (358)
                      ++........  .......+|...|++++|+|++ ++|++|+.||.|+|||+++++.  +..+..|.   ..+.++.|+ 
T Consensus       219 ~~~~~~~~~~--~~~~~~~~h~~~V~~~~~s~~~-~~l~tgs~Dg~v~iwd~~t~~~--~~~l~~~~~~~~~~~~~~~~-  292 (311)
T d1nr0a1         219 VDGTKTGVFE--DDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKV--EKTIPVGTRIEDQQLGIIWT-  292 (311)
T ss_dssp             TTCCEEEECB--CTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE--EEEEECCSSGGGCEEEEEEC-
T ss_pred             cccccccccc--ccccccccccccccccccCCCC-CEEEEEeCCCeEEEEECCCCcE--EEEEECCCCccceEEEEEec-
Confidence            8763211000  1111234688899999999998 8999999999999999999874  44444332   344555555 


Q ss_pred             CCCeEEEEEccCCeEEEEEcc
Q 018293          316 DSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       316 ~~~~~l~~~~~dg~i~vw~~~  336 (358)
                       +.+ +++++.||.|++||.+
T Consensus       293 -~~~-l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         293 -KQA-LVSISANGFINFVNPE  311 (311)
T ss_dssp             -SSC-EEEEETTCCEEEEETT
T ss_pred             -CCE-EEEEECCCEEEEEeCC
Confidence             443 7788999999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-42  Score=287.06  Aligned_cols=278  Identities=17%  Similarity=0.309  Sum_probs=228.8

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEee-ceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVH-HHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI   79 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v   79 (358)
                      ++|+|++++|++|. ++     .|.+|+...+........ ........+.+++|       +|++++|++|+.||.|++
T Consensus        57 v~fs~~g~~latg~-dg-----~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~-------s~dg~~l~s~~~dg~i~i  123 (337)
T d1gxra_          57 VTISNPTRHVYTGG-KG-----CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL-------LPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             EEECSSSSEEEEEC-BS-----EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEE-------CTTSSEEEEEESSSEEEE
T ss_pred             EEECCCCCEEEEEE-CC-----EEEEEEccCCcccceeEEeeecCCCCcEEEEEE-------cCCCCEEEEeeccccccc
Confidence            47999999999984 55     677787765433332221 11222334456666       899999999999999999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  159 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  159 (358)
                      ||+....                         ......+..|...|.+++|+|+ +.++++++.|+.|++|++.++++..
T Consensus       124 wd~~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~~~~~~~~~~  177 (337)
T d1gxra_         124 WDLAAPT-------------------------PRIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTLVR  177 (337)
T ss_dssp             EECCCC---------------------------EEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ccccccc-------------------------cccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence            9986422                         1223345578999999999999 6799999999999999999999999


Q ss_pred             eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcc
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR  239 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~  239 (358)
                      ....|...+.+++|++++ ..+++++.|+.+++||+++++... ...+...|.+++|+|+ +..+++++.||.+++||++
T Consensus       178 ~~~~~~~~v~~l~~s~~~-~~~~~~~~d~~v~i~d~~~~~~~~-~~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~i~d~~  254 (337)
T d1gxra_         178 QFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQ-QHDFTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVN  254 (337)
T ss_dssp             EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEECTT-SSEEEEEETTSCEEEEETT
T ss_pred             cccccccccccccccccc-cccccccccccccccccccceeec-ccccccceEEEEEccc-ccccceecccccccccccc
Confidence            999999999999999999 889999999999999999877654 5567889999999995 5689999999999999998


Q ss_pred             cCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCe
Q 018293          240 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF  319 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  319 (358)
                      ..          .......|...|++++|+|++ ++|++++.||.|++||+.+++.  +... .|...|.+++|+|++++
T Consensus       255 ~~----------~~~~~~~~~~~i~~v~~s~~g-~~l~s~s~Dg~i~iwd~~~~~~--~~~~-~~~~~v~~~~~s~d~~~  320 (337)
T d1gxra_         255 KP----------DKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGAS--IFQS-KESSSVLSCDISVDDKY  320 (337)
T ss_dssp             SS----------CEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE--EEEE-ECSSCEEEEEECTTSCE
T ss_pred             cc----------ccccccccccccceEEECCCC-CEEEEEeCCCeEEEEECCCCCE--EEEc-cCCCCEEEEEEeCCCCE
Confidence            75          234667889999999999998 8999999999999999999884  3333 36788999999999995


Q ss_pred             EEEEEccCCeEEEEEc
Q 018293          320 VLAIGGSKGKLEIWDT  335 (358)
Q Consensus       320 ~l~~~~~dg~i~vw~~  335 (358)
                       |++|+.||.|+|||+
T Consensus       321 -l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         321 -IVTGSGDKKATVYEV  335 (337)
T ss_dssp             -EEEEETTSCEEEEEE
T ss_pred             -EEEEeCCCeEEEEEE
Confidence             889999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.1e-40  Score=274.11  Aligned_cols=248  Identities=17%  Similarity=0.216  Sum_probs=210.8

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      .++++|+|+.|+.++ ++.|.+|++++....                           ..+.+|...|++++|+|+ +++
T Consensus        22 ~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~---------------------------~~~~~H~~~v~~~~~sp~-g~~   72 (311)
T d1nr0a1          22 VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDT---------------------------EIYTEHSHQTTVAKTSPS-GYY   72 (311)
T ss_dssp             CCEECTTSSEEEEEE-TTEEEEEETTCSSCC---------------------------EEECCCSSCEEEEEECTT-SSE
T ss_pred             EEEEcCCCCEEEEEe-CCEEEEEECCCCcee---------------------------EEEcCCCCCEEEEEEeCC-CCe
Confidence            345589999999985 667999999754332                           245679999999999999 679


Q ss_pred             EEEEEcCCeEEEEECCCCcee--eeecccccceeeEEEcCCCCcEEEEEeC--CCcEEEEEcccCCCccceeeecCCeee
Q 018293          138 LASASADKQVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSF--DRSVVMKDARISTHSGFKWAVAADVES  213 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~  213 (358)
                      |++|+.||+|++||+.+++..  ..+..|..+|.+++|+|++ .++++++.  +..+++|++.+.+.......|...|.+
T Consensus        73 latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~  151 (311)
T d1nr0a1          73 CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS  151 (311)
T ss_dssp             EEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred             EeccccCceEeeeeeeccccccccccccccCccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999887643  5577899999999999999 77888875  456999999988877777788899999


Q ss_pred             EEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 018293          214 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  293 (358)
Q Consensus       214 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~  293 (358)
                      ++|+|+++..+++|+.||.|++||+++.         +....+..|..+|+++.|+|++ +++++++.|+.|++||++++
T Consensus       152 v~~~~~~~~~l~sgs~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~  221 (311)
T d1nr0a1         152 VDFKPSRPFRIISGSDDNTVAIFEGPPF---------KFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDG  221 (311)
T ss_dssp             EEECSSSSCEEEEEETTSCEEEEETTTB---------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTC
T ss_pred             ccccccceeeeccccccccccccccccc---------ccccccccccccccccccCccc-cccccccccccccccccccc
Confidence            9999988777999999999999999987         7778888999999999999998 89999999999999999987


Q ss_pred             CceeeEe-----cCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293          294 QPSCIAS-----RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       294 ~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                      .......     ..+|...|.+++|+|++++ |++|+.||.|+|||+.+++.+..+-.
T Consensus       222 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~-l~tgs~Dg~v~iwd~~t~~~~~~l~~  278 (311)
T d1nr0a1         222 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTIKIWNVATLKVEKTIPV  278 (311)
T ss_dssp             CEEEECBCTTSSSCSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             cccccccccccccccccccccccccCCCCCE-EEEEeCCCeEEEEECCCCcEEEEEEC
Confidence            6433222     2357889999999999995 88999999999999999987765433

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-39  Score=267.20  Aligned_cols=276  Identities=22%  Similarity=0.380  Sum_probs=235.5

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      |+|+|++++|++|..++     .|.+|+...+.....+..|.    ..+.++.|       +|++.+++++..++.+.+|
T Consensus        23 l~~sp~~~~l~s~s~Dg-----~i~iWd~~~~~~~~~~~~h~----~~V~~~~~-------~~~~~~~~~~~~~~~~~~~   86 (317)
T d1vyhc1          23 VIFHPVFSVMVSASEDA-----TIKVWDYETGDFERTLKGHT----DSVQDISF-------DHSGKLLASCSADMTIKLW   86 (317)
T ss_dssp             EEECSSSSEEEEEESSS-----CEEEEETTTCCCCEEECCCS----SCEEEEEE-------CTTSSEEEEEETTSCCCEE
T ss_pred             EEEcCCCCEEEEEeCCC-----eEEEEECCCCCEEEEEeCCC----CcEEEEee-------ecccccccccccccccccc
Confidence            57899999999997776     67778877654444333332    22335544       8999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      +......                           ...+.+|...+.++.|+|+ +..+++++.|+.+++||+++++.+..
T Consensus        87 ~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~  138 (317)
T d1vyhc1          87 DFQGFEC---------------------------IRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKT  138 (317)
T ss_dssp             ETTSSCE---------------------------EECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ccccccc---------------------------ccccccccccceeeeccCC-CceEEeeccCcceeEeecccceeeeE
Confidence            9864322                           2244578999999999999 67899999999999999999999999


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC-------------------C
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA-------------------E  221 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------~  221 (358)
                      +..|...+.+++|++++ .++++++.|+.|++|++...+.......+...+.++.|+|+.                   +
T Consensus       139 ~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (317)
T d1vyhc1         139 FTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG  217 (317)
T ss_dssp             EECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred             EccCCCcceeeecccCC-CEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCC
Confidence            99999999999999998 899999999999999999888776666778888888888743                   3


Q ss_pred             CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEec
Q 018293          222 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR  301 (358)
Q Consensus       222 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  301 (358)
                      ..+++++.|+.|++||++++         .++..+.+|...|.+++++|++ .+|++|+.||.|++||+++++  .+..+
T Consensus       218 ~~~~~~~~d~~i~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~  285 (317)
T d1vyhc1         218 PFLLSGSRDKTIKMWDVSTG---------MCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKR--CMKTL  285 (317)
T ss_dssp             CEEEEEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSC--CCEEE
T ss_pred             ceeEeccCCCEEEEEECCCC---------cEEEEEeCCCCCEEEEEECCCC-CEEEEEECCCeEEEEECCCCc--EEEEE
Confidence            46889999999999999987         7788899999999999999998 899999999999999999988  45667


Q ss_pred             CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEE
Q 018293          302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  334 (358)
Q Consensus       302 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~  334 (358)
                      .+|.+.|++++|+|++++ |++|+.||+|+|||
T Consensus       286 ~~h~~~V~~~~~s~~~~~-l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         286 NAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWE  317 (317)
T ss_dssp             ECCSSCEEEEEECSSSSC-EEEEETTSEEEEEC
T ss_pred             cCCCCCEEEEEEcCCCCE-EEEEeCCCeEEEeC
Confidence            789999999999999995 88999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.9e-39  Score=273.61  Aligned_cols=289  Identities=22%  Similarity=0.328  Sum_probs=217.2

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeecee--------------ecCCcccceeeecCCccccCCCc
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI--------------IIPAFPLCMAWLDCPLKDREKGN   66 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~s~~~~   66 (358)
                      |+|+|+|++|++|. ++     .+.+|+..++.....+..+..              .....+.++       +|+|+++
T Consensus        68 l~fs~dg~~lasg~-d~-----~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l-------~~s~~~~  134 (388)
T d1erja_          68 VKFSNDGEYLATGC-NK-----TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV-------CFSPDGK  134 (388)
T ss_dssp             EEECTTSSEEEEEC-BS-----CEEEEETTTCCEEEEECC-----------------CCCCBEEEE-------EECTTSS
T ss_pred             EEECCCCCEEEEEe-CC-----eEEEEEecccceEeeecccccccccccccccccccCCCCCEEEE-------EECCCCC
Confidence            47899999999884 55     677787765422222211111              111122334       4599999


Q ss_pred             eEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCe
Q 018293           67 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  146 (358)
Q Consensus        67 ~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~  146 (358)
                      +|++|+.||.|++|+...++..                           ....+|...|.++.|+++ +..+++++.++.
T Consensus       135 ~l~s~~~dg~v~i~~~~~~~~~---------------------------~~~~~h~~~v~~~~~~~~-~~~~~~~~~~~~  186 (388)
T d1erja_         135 FLATGAEDRLIRIWDIENRKIV---------------------------MILQGHEQDIYSLDYFPS-GDKLVSGSGDRT  186 (388)
T ss_dssp             EEEEEETTSCEEEEETTTTEEE---------------------------EEECCCSSCEEEEEECTT-SSEEEEEETTSE
T ss_pred             cceecccccccccccccccccc---------------------------cccccccccccccccccc-ccccccccccee
Confidence            9999999999999998754332                           244579999999999999 678999999999


Q ss_pred             EEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc-------eeeecCCeeeEEEcCC
Q 018293          147 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-------KWAVAADVESLAWDPH  219 (358)
Q Consensus       147 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~i~~~~~~~~  219 (358)
                      +++||.++.........+.. ..++.+.+..+.+|++++.||.|++||.++......       ...|...|.+++|+|+
T Consensus       187 i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  265 (388)
T d1erja_         187 VRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD  265 (388)
T ss_dssp             EEEEETTTTEEEEEEECSSC-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred             eeeeeccccccccccccccc-cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCC
Confidence            99999999887777765544 555666664448999999999999999987764332       2246778999999995


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCC---CCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDS---TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  296 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  296 (358)
                       +.++++++.||.|++||++........   ...........|...|.+++|+|++ .+|++|+.||.|++||+++++  
T Consensus       266 -~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~--  341 (388)
T d1erja_         266 -GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGN--  341 (388)
T ss_dssp             -SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCC--
T ss_pred             -CCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC-CEEEEEeCCCEEEEEECCCCc--
Confidence             568999999999999999876432211   1123345567788999999999998 899999999999999999988  


Q ss_pred             eeEecCCCCceeEEEEE------cCCCCeEEEEEccCCeEEEEEcc
Q 018293          297 CIASRNPKAGAVFSVAF------SEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       297 ~~~~~~~~~~~v~~~~~------~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      .+..+.+|.+.|.++++      +|++. +|++|+.||+|+||+++
T Consensus       342 ~~~~l~~H~~~V~~~~~~~~~~~spd~~-~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         342 PLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEE
T ss_pred             EEEEEeCCCCCEEEEEEecCcccCCCCC-EEEEEeCCCEEEEEeee
Confidence            56778889999999875      56888 59999999999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-38  Score=262.79  Aligned_cols=243  Identities=16%  Similarity=0.210  Sum_probs=207.2

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      +|+|+|++||+|+ ||.|+|||+.+.......                      ......+|.+.|.+++|+|+ +++|+
T Consensus        58 ~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~----------------------~~~~~~~h~~~I~~v~~s~d-g~~l~  113 (337)
T d1gxra_          58 TISNPTRHVYTGG-KGCVKVWDISHPGNKSPV----------------------SQLDCLNRDNYIRSCKLLPD-GCTLI  113 (337)
T ss_dssp             EECSSSSEEEEEC-BSEEEEEETTSTTCCSCS----------------------EEEECSCTTSBEEEEEECTT-SSEEE
T ss_pred             EECCCCCEEEEEE-CCEEEEEEccCCccccee----------------------EEeeecCCCCcEEEEEEcCC-CCEEE
Confidence            4499999999998 899999999765433221                      12234579999999999999 67999


Q ss_pred             EEEcCCeEEEEECCCC--ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293          140 SASADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  217 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  217 (358)
                      +|+.||.|++||+...  +....+..|...+.+++|+|++ .++++++.|+.+++||+++.+.......+...+.+++|+
T Consensus       114 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s  192 (337)
T d1gxra_         114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  192 (337)
T ss_dssp             EEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             Eeeccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999998754  4566778899999999999998 899999999999999999888776667788999999999


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCcee
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  297 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  297 (358)
                      ++ +..+++++.|+.+++||++++         +.+.. ..|...|.+++|+|++ .+|++|+.|+.+++||+++.+   
T Consensus       193 ~~-~~~~~~~~~d~~v~i~d~~~~---------~~~~~-~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~i~d~~~~~---  257 (337)
T d1gxra_         193 ND-GTKLWTGGLDNTVRSWDLREG---------RQLQQ-HDFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPD---  257 (337)
T ss_dssp             TT-SSEEEEEETTSEEEEEETTTT---------EEEEE-EECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSC---
T ss_pred             cc-ccccccccccccccccccccc---------eeecc-cccccceEEEEEcccc-cccceeccccccccccccccc---
Confidence            95 558999999999999999876         44433 4578899999999998 899999999999999999887   


Q ss_pred             eEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccc
Q 018293          298 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       298 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      ......|...|.+++|+|+++ .|++++.||.|++||+.+++.+..
T Consensus       258 ~~~~~~~~~~i~~v~~s~~g~-~l~s~s~Dg~i~iwd~~~~~~~~~  302 (337)
T d1gxra_         258 KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQ  302 (337)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             cccccccccccceEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE
Confidence            345567889999999999999 588999999999999999887754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-38  Score=264.94  Aligned_cols=290  Identities=13%  Similarity=0.168  Sum_probs=216.5

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceE---eeceeecCCcccceeeecCCccccC--CCceEEecCCCC
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLY---VHHHIIIPAFPLCMAWLDCPLKDRE--KGNFMAVGSMEP   75 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~g~~dg   75 (358)
                      |+|+|+++.|+++..+.    ..++.++......+.+.   .|+    .....+++|       +|  ++++||+|+.||
T Consensus        23 l~~~~~~~~la~~~~~~----~~i~~~~~~~~~~~~~~~~~gh~----~~~v~~v~f-------sP~~~g~~lasgs~Dg   87 (325)
T d1pgua1          23 LSYDPTTNAIAYPCGKS----AFVRCLDDGDSKVPPVVQFTGHG----SSVVTTVKF-------SPIKGSQYLCSGDESG   87 (325)
T ss_dssp             CEEETTTTEEEEEETTE----EEEEECCSSCCSSCSEEEECTTT----TSCEEEEEE-------CSSTTCCEEEEEETTS
T ss_pred             EEECCCCCEEEEEeCCC----EEEEEEeCCCCCccceEEEeCCC----CCCEEEEEE-------eeCCCCCEEEEEeCCC
Confidence            57899999999885432    23455655443222221   122    223446665       55  678999999999


Q ss_pred             eEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE--cCCeEEEEECC
Q 018293           76 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS--ADKQVKIWDVA  153 (358)
Q Consensus        76 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~dg~v~iwd~~  153 (358)
                      +|+|||+..........                   ......+..|.++|.+++|+++ +.++++++  .++.+++|+.+
T Consensus        88 ~i~iWd~~~~~~~~~~~-------------------~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~~~~~~~~~~~~~  147 (325)
T d1pgua1          88 KVIVWGWTFDKESNSVE-------------------VNVKSEFQVLAGPISDISWDFE-GRRLCVVGEGRDNFGVFISWD  147 (325)
T ss_dssp             EEEEEEEEEEGGGTEEE-------------------EEEEEEEECCSSCEEEEEECTT-SSEEEEEECCSSCSEEEEETT
T ss_pred             CEEEeeecCCcceeeee-------------------cccccccccccCcEEEEEECCC-CCccceeeccccceEEEEeec
Confidence            99999997655443211                   1122234568899999999999 55666665  46789999999


Q ss_pred             CCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc---eeeecCCeeeEEEcCCCCCeEEEEecC
Q 018293          154 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---KWAVAADVESLAWDPHAEHSFVVSLED  230 (358)
Q Consensus       154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~d  230 (358)
                      +++++..+.+|...|.+++|+|+++.++++++.|+.+++||....+....   ...+...|.+++|+|+++.++++++.|
T Consensus       148 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d  227 (325)
T d1pgua1         148 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD  227 (325)
T ss_dssp             TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred             ccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccc
Confidence            99999999999999999999999866788999999999999876554332   234567799999999878899999999


Q ss_pred             CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEec---CCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCce
Q 018293          231 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN---PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA  307 (358)
Q Consensus       231 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~---~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  307 (358)
                      |.|++||++++         +.+..+.+|..++.++.|+   |++ .+|++++.|+.|+|||+++++.........+...
T Consensus       228 ~~i~iwd~~~~---------~~~~~l~~~~~~v~~~~~s~~~~dg-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~  297 (325)
T d1pgua1         228 RKISCFDGKSG---------EFLKYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG  297 (325)
T ss_dssp             CCEEEEETTTC---------CEEEECCBTTBCCCSCEEEEEESSS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGG
T ss_pred             cceeeeeeccc---------cccccccccccccccceeeeeccCC-CEEEEEeCCCeEEEEECCCCCEEEEEEecCCccc
Confidence            99999999887         6778888888777666555   566 7999999999999999999885555555555444


Q ss_pred             eEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          308 VFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       308 v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      +..+++.+.+...+++++.||.|++||+
T Consensus       298 ~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         298 NQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             GCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            4444444332225788999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.7e-38  Score=265.21  Aligned_cols=284  Identities=15%  Similarity=0.156  Sum_probs=212.6

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCC--CceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGD--PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE   78 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~   78 (358)
                      ++|+|++++|+++..++     .|.+|+...+..  ...+..|    ...+.+++|       +|++++|++|+.|+.|+
T Consensus        13 ~~~s~dg~~la~~~~~~-----~i~iw~~~~~~~~~~~~l~gH----~~~V~~l~f-------sp~~~~l~s~s~D~~i~   76 (371)
T d1k8kc_          13 HAWNKDRTQIAICPNNH-----EVHIYEKSGNKWVQVHELKEH----NGQVTGVDW-------APDSNRIVTCGTDRNAY   76 (371)
T ss_dssp             EEECTTSSEEEEECSSS-----EEEEEEEETTEEEEEEEEECC----SSCEEEEEE-------ETTTTEEEEEETTSCEE
T ss_pred             EEECCCCCEEEEEeCCC-----EEEEEECCCCCEEEEEEecCC----CCCEEEEEE-------CCCCCEEEEEECCCeEE
Confidence            47899999999997665     667777654311  1111122    333446655       89999999999999999


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce-
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-  157 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-  157 (358)
                      |||+.+...                         .....+.+|...|.+++|+|+ ++.|++|+.|+++++|+++.... 
T Consensus        77 vWd~~~~~~-------------------------~~~~~~~~~~~~v~~i~~~p~-~~~l~~~s~d~~i~i~~~~~~~~~  130 (371)
T d1k8kc_          77 VWTLKGRTW-------------------------KPTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQENDW  130 (371)
T ss_dssp             EEEEETTEE-------------------------EEEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTTTE
T ss_pred             EEeeccccc-------------------------ccccccccccccccccccccc-cccceeecccCcceeeeeeccccc
Confidence            999975322                         222344578999999999999 67999999999999999876543 


Q ss_pred             ---eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc------------------cceeeecCCeeeEEE
Q 018293          158 ---NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS------------------GFKWAVAADVESLAW  216 (358)
Q Consensus       158 ---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------------~~~~~~~~~i~~~~~  216 (358)
                         ......|...|.+++|+|++ .+|++++.|+.+++||.......                  .....+...+.+++|
T Consensus       131 ~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  209 (371)
T d1k8kc_         131 WVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF  209 (371)
T ss_dssp             EEEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE
T ss_pred             ccccccccccccccccccccccc-cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEe
Confidence               33345688999999999999 89999999999999998654311                  111245667999999


Q ss_pred             cCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce
Q 018293          217 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  296 (358)
Q Consensus       217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  296 (358)
                      +|++ +++++++.|+.|++||+...         ..+..+..|..+|.+++|+|++ .+|++| .|+.+++|........
T Consensus       210 s~~g-~~l~s~~~d~~i~iwd~~~~---------~~~~~~~~~~~~v~s~~fs~d~-~~la~g-~d~~~~~~~~~~~~~~  277 (371)
T d1k8kc_         210 SANG-SRVAWVSHDSTVCLADADKK---------MAVATLASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGK  277 (371)
T ss_dssp             CSSS-SEEEEEETTTEEEEEEGGGT---------TEEEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTE
T ss_pred             eccc-ccccccccCCcceEEeeecc---------cceeeeecccccceeeeecCCC-CEEEEE-cCCceEEEEeeCCCce
Confidence            9964 58999999999999999987         7788899999999999999987 677655 4777777654332110


Q ss_pred             e---------------------------------------eEecCCCCceeEEEEEcCCCC---eEEEEEccCCeEEEEE
Q 018293          297 C---------------------------------------IASRNPKAGAVFSVAFSEDSP---FVLAIGGSKGKLEIWD  334 (358)
Q Consensus       297 ~---------------------------------------~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~i~vw~  334 (358)
                      .                                       ......|.+.|+++++.+.+.   ..++|++.||.|++||
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~  357 (371)
T d1k8kc_         278 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  357 (371)
T ss_dssp             EEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             EEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence            0                                       000123788899999987542   2589999999999999


Q ss_pred             ccCCC
Q 018293          335 TLSDA  339 (358)
Q Consensus       335 ~~~~~  339 (358)
                      +++.+
T Consensus       358 ~~~~~  362 (371)
T d1k8kc_         358 VRSLE  362 (371)
T ss_dssp             HHHHH
T ss_pred             CCcCh
Confidence            97643

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-37  Score=264.27  Aligned_cols=302  Identities=18%  Similarity=0.269  Sum_probs=221.9

Q ss_pred             EEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccc
Q 018293           23 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKK  102 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  102 (358)
                      ...+|+...........++.......+.|++|       ||||++||+|+ |+.|+|||+.+++...........     
T Consensus        39 ~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~f-------s~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~-----  105 (388)
T d1erja_          39 YYILYNPALPREIDVELHKSLDHTSVVCCVKF-------SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAA-----  105 (388)
T ss_dssp             CEEEECTTSCCCEEEEEEEEEECSSCCCEEEE-------CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------
T ss_pred             cEEEeCCCCCcceeeeeEeeCCCCCcEEEEEE-------CCCCCEEEEEe-CCeEEEEEecccceEeeecccccc-----
Confidence            45567765544333444444445666677766       89999999997 899999999876654322111000     


Q ss_pred             cccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEE
Q 018293          103 KKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILL  182 (358)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  182 (358)
                          ..............|...|++++|+|+ +++|++|+.||.|++||...++.+..+.+|...|.++.|++++ ..++
T Consensus       106 ----~~~~~~~~~~~~~~~~~~V~~l~~s~~-~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~  179 (388)
T d1erja_         106 ----NKDPENLNTSSSPSSDLYIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLV  179 (388)
T ss_dssp             -----------------CCCCBEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEE
T ss_pred             ----cccccccccccccCCCCCEEEEEECCC-CCcceeccccccccccccccccccccccccccccccccccccc-cccc
Confidence                000111222334568899999999999 6799999999999999999999999999999999999999998 8899


Q ss_pred             EEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCc
Q 018293          183 SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA  262 (358)
Q Consensus       183 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  262 (358)
                      +++.++.+++||.++..... .........++.+.+.++.++++++.||.|++||.++.......  ........+|...
T Consensus       180 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~~~~~~~~~h~~~  256 (388)
T d1erja_         180 SGSGDRTVRIWDLRTGQCSL-TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL--DSENESGTGHKDS  256 (388)
T ss_dssp             EEETTSEEEEEETTTTEEEE-EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE--C------CCCSSC
T ss_pred             ccccceeeeeeecccccccc-ccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceee--ccccccccCCCCC
Confidence            99999999999998776554 34455566777777767789999999999999999876321100  0112233568889


Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc----------eeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEE
Q 018293          263 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI  332 (358)
Q Consensus       263 i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v  332 (358)
                      |.+++|+|++ .+|++++.||.|++||+++.+.          ........|...|.+++|+|++++ |++|+.||.|++
T Consensus       257 v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~sg~~dg~i~v  334 (388)
T d1erja_         257 VYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLF  334 (388)
T ss_dssp             EEEEEECTTS-SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCE-EEEEETTSEEEE
T ss_pred             EEEEEECCCC-CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCE-EEEEeCCCEEEE
Confidence            9999999998 8999999999999999986542          133445567889999999999994 889999999999


Q ss_pred             EEccCCCccccccccC
Q 018293          333 WDTLSDAGISNRFSKY  348 (358)
Q Consensus       333 w~~~~~~~~~~~~~~~  348 (358)
                      ||+.+++.+..+-+|.
T Consensus       335 wd~~~~~~~~~l~~H~  350 (388)
T d1erja_         335 WDKKSGNPLLMLQGHR  350 (388)
T ss_dssp             EETTTCCEEEEEECCS
T ss_pred             EECCCCcEEEEEeCCC
Confidence            9999999887665543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.4e-38  Score=265.63  Aligned_cols=253  Identities=17%  Similarity=0.213  Sum_probs=204.1

Q ss_pred             CcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEE
Q 018293           47 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL  126 (358)
Q Consensus        47 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  126 (358)
                      .++.|++|       +|+|++||+|+.||.|+|||..+++                         ......+.+|.++|+
T Consensus         8 ~pIt~~~~-------s~dg~~la~~~~~~~i~iw~~~~~~-------------------------~~~~~~l~gH~~~V~   55 (371)
T d1k8kc_           8 EPISCHAW-------NKDRTQIAICPNNHEVHIYEKSGNK-------------------------WVQVHELKEHNGQVT   55 (371)
T ss_dssp             SCCCEEEE-------CTTSSEEEEECSSSEEEEEEEETTE-------------------------EEEEEEEECCSSCEE
T ss_pred             CCeEEEEE-------CCCCCEEEEEeCCCEEEEEECCCCC-------------------------EEEEEEecCCCCCEE
Confidence            44567766       9999999999999999999986432                         223345668999999


Q ss_pred             EEecCCCCCcEEEEEEcCCeEEEEECCCCce--eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc-
Q 018293          127 GLAWNKEFRNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-  203 (358)
Q Consensus       127 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-  203 (358)
                      +++|+|+ +++|++|+.|++|++||+.+++.  ...+.+|...|.+++|+|++ +.|++++.|+.+++|++........ 
T Consensus        56 ~l~fsp~-~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~~  133 (371)
T d1k8kc_          56 GVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVC  133 (371)
T ss_dssp             EEEEETT-TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred             EEEECCC-CCEEEEEECCCeEEEEeeccccccccccccccccccccccccccc-ccceeecccCcceeeeeecccccccc
Confidence            9999999 67999999999999999987754  44556788999999999999 8999999999999999887654322 


Q ss_pred             ---eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC---------CCCCCccEEEeecCCceeEEEecCC
Q 018293          204 ---KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD---------STSQQSSFTLHAHDKAVCTISYNPL  271 (358)
Q Consensus       204 ---~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~i~~~~~  271 (358)
                         ...+...|.+++|+|+ +.++++|+.|+.+++||.........         ............|...|.+++|+|+
T Consensus       134 ~~~~~~~~~~v~~v~~~p~-~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  212 (371)
T d1k8kc_         134 KHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN  212 (371)
T ss_dssp             EEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred             ccccccccccccccccccc-ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecc
Confidence               2235678999999995 55899999999999999876542211         1112345566788999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          272 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       272 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      + ++|++++.|+.|++||+.+++  .+..+..|..+|.+++|+|+++ ++++| .|+.+++|......
T Consensus       213 g-~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~s~~fs~d~~-~la~g-~d~~~~~~~~~~~~  275 (371)
T d1k8kc_         213 G-SRVAWVSHDSTVCLADADKKM--AVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDSAA  275 (371)
T ss_dssp             S-SEEEEEETTTEEEEEEGGGTT--EEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEETTT
T ss_pred             c-ccccccccCCcceEEeeeccc--ceeeeecccccceeeeecCCCC-EEEEE-cCCceEEEEeeCCC
Confidence            8 899999999999999999887  5667778889999999999997 46654 57777777765543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.2e-36  Score=250.19  Aligned_cols=278  Identities=19%  Similarity=0.336  Sum_probs=227.0

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      |+|+|++++|++|+.++     .|.+|+...+.....+..|    ...+.++.|       +|+++++++|+.|+.+++|
T Consensus        61 l~~s~~~~~l~sgs~Dg-----~v~iWd~~~~~~~~~~~~~----~~~v~~v~~-------~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          61 MHWGTDSRLLVSASQDG-----KLIIWDSYTTNKVHAIPLR----SSWVMTCAY-------APSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             EEECTTSSEEEEEETTT-----EEEEEETTTTEEEEEEECS----CSCEEEEEE-------CTTSSEEEEEETTCCEEEE
T ss_pred             EEECCCCCEEEEEECCC-----ceeeeecccceeEEEEecc----cccEEeeEe-------eccceeeeeecccceeecc
Confidence            47999999999998887     8888888765322222222    233345555       8999999999999999999


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      +.......                       ......+.+|............  ..+.....|.....+..........
T Consensus       125 ~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  179 (340)
T d1tbga_         125 NLKTREGN-----------------------VRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTT  179 (340)
T ss_dssp             ESSSSCSC-----------------------CCEEEEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             cccccccc-----------------------cccceecccccccccccccccc--ccccccccccccccccccccccccc
Confidence            98643322                       2222345567777777666654  4788889999999999988877777


Q ss_pred             ecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          161 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      ...+...+....+.+.+ .++++++.|+.|++||+++++.......|...|++++|+|+ +.++++|+.||.|++||++.
T Consensus       180 ~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~-~~~l~s~s~d~~i~~~~~~~  257 (340)
T d1tbga_         180 FTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             EECCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTT
T ss_pred             ccccceeEeeecccccc-ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeecc
Confidence            77788889999999988 89999999999999999988877767778999999999995 56899999999999999987


Q ss_pred             CCCCCCCCCCCccEEE--eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCC
Q 018293          241 AKSDPDSTSQQSSFTL--HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP  318 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  318 (358)
                      .         .....+  ..+...|.+++|+|++ .+|++|+.||.|++||+.+++  .+..+.+|.++|++++|+|+++
T Consensus       258 ~---------~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~--~~~~~~~H~~~V~~l~~s~d~~  325 (340)
T d1tbga_         258 D---------QELMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLGVTDDGM  325 (340)
T ss_dssp             T---------EEEEEECCTTCCSCEEEEEECSSS-CEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSS
T ss_pred             c---------ccccccccccccCceEEEEECCCC-CEEEEEECCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEeCCCC
Confidence            6         333333  4556789999999998 899999999999999999888  5777889999999999999999


Q ss_pred             eEEEEEccCCeEEEEE
Q 018293          319 FVLAIGGSKGKLEIWD  334 (358)
Q Consensus       319 ~~l~~~~~dg~i~vw~  334 (358)
                      + |++|+.||.|+|||
T Consensus       326 ~-l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         326 A-VATGSWDSFLKIWN  340 (340)
T ss_dssp             C-EEEEETTSCEEEEC
T ss_pred             E-EEEEccCCEEEEeC
Confidence            5 88999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-35  Score=244.66  Aligned_cols=246  Identities=23%  Similarity=0.323  Sum_probs=217.8

Q ss_pred             ccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           61 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        61 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      |+|++++||+|+.||+|+|||+.+++..                           ..+.+|...|.+++|+|+ +.++++
T Consensus        25 ~sp~~~~l~s~s~Dg~i~iWd~~~~~~~---------------------------~~~~~h~~~V~~~~~~~~-~~~~~~   76 (317)
T d1vyhc1          25 FHPVFSVMVSASEDATIKVWDYETGDFE---------------------------RTLKGHTDSVQDISFDHS-GKLLAS   76 (317)
T ss_dssp             ECSSSSEEEEEESSSCEEEEETTTCCCC---------------------------EEECCCSSCEEEEEECTT-SSEEEE
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCCEE---------------------------EEEeCCCCcEEEEeeecc-cccccc
Confidence            3899999999999999999999765433                           245679999999999999 679999


Q ss_pred             EEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCC
Q 018293          141 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  220 (358)
Q Consensus       141 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  220 (358)
                      +..++.+.+|+....+....+..|...+.++.|++++ ..+++++.|+.+++||+++++.......+...+.+++|+|+ 
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  154 (317)
T d1vyhc1          77 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD-  154 (317)
T ss_dssp             EETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT-
T ss_pred             cccccccccccccccccccccccccccceeeeccCCC-ceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccC-
Confidence            9999999999999998888888999999999999999 88999999999999999998877767778889999999995 


Q ss_pred             CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC-------------------CcEEEEEeC
Q 018293          221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV-------------------PNLLATGST  281 (358)
Q Consensus       221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-------------------~~~l~~~~~  281 (358)
                      +.++++++.|+.|++|++++.         .....+..|...+.++.++|++                   +.++++++.
T Consensus       155 ~~~l~~~~~d~~v~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (317)
T d1vyhc1         155 GTLIASCSNDQTVRVWVVATK---------ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR  225 (317)
T ss_dssp             SSEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred             CCEEEEEeCCCeEEEEeeccc---------eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC
Confidence            569999999999999999987         7778888899999999998753                   247899999


Q ss_pred             CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293          282 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       282 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                      |+.|++||+++++  .+..+.+|...|.+++|+|++++ |++|+.||.|++||+.+++.+..+-.|.
T Consensus       226 d~~i~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~h~  289 (317)
T d1vyhc1         226 DKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNKRCMKTLNAHE  289 (317)
T ss_dssp             TSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEEECCTTSCCCEEEECCS
T ss_pred             CCEEEEEECCCCc--EEEEEeCCCCCEEEEEECCCCCE-EEEEECCCeEEEEECCCCcEEEEEcCCC
Confidence            9999999999887  56677789999999999999995 8899999999999999998887655543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.1e-35  Score=239.12  Aligned_cols=278  Identities=16%  Similarity=0.218  Sum_probs=203.0

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceE-eeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLY-VHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI   79 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v   79 (358)
                      |+|+|+++.|++|..++     .+.+|+...+.....+ ..|    ...+.++.|       +|++++++ ++.|+.+++
T Consensus        18 l~~s~dg~~l~s~s~Dg-----~v~vWd~~~~~~~~~~~~~h----~~~v~~v~~-------~~~g~~~~-~~~d~~v~~   80 (299)
T d1nr0a2          18 LSSSADGKTLFSADAEG-----HINSWDISTGISNRVFPDVH----ATMITGIKT-------TSKGDLFT-VSWDDHLKV   80 (299)
T ss_dssp             EEECTTSSEEEEEETTS-----CEEEEETTTCCEEECSSCSC----SSCEEEEEE-------CTTSCEEE-EETTTEEEE
T ss_pred             EEECCCCCEEEEEcCCC-----eEEEEECCCCcEEEEEcCCC----CCcEEEEEe-------eccceeec-ccceeeEEE
Confidence            57999999999997776     6778887664222221 112    233345555       78887554 556999999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  159 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  159 (358)
                      |+........                        .......|...+.+++|+|+ +.++++ +.++.+.+|+...  ...
T Consensus        81 ~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~s~~-g~~~~~-~~~~~i~~~~~~~--~~~  132 (299)
T d1nr0a2          81 VPAGGSGVDS------------------------SKAVANKLSSQPLGLAVSAD-GDIAVA-ACYKHIAIYSHGK--LTE  132 (299)
T ss_dssp             ECSSSSSSCT------------------------TSCCEEECSSCEEEEEECTT-SSCEEE-EESSEEEEEETTE--EEE
T ss_pred             eccCCccccc------------------------cccccccccccccccccccc-cccccc-ccccccccccccc--ccc
Confidence            9986432211                        11122346778999999999 445554 4567899999542  222


Q ss_pred             eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc-ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293          160 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  238 (358)
Q Consensus       160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~  238 (358)
                      ..  ....+.+++|+|++ .++++++.||.|++||+++.+... ....+...|.+++|+|+ +.++++++.|+.|++||+
T Consensus       133 ~~--~~~~~~~~~~s~~~-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~~~  208 (299)
T d1nr0a2         133 VP--ISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN-GAFLVATDQSRKVIPYSV  208 (299)
T ss_dssp             EE--CSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT-SSEEEEEETTSCEEEEEG
T ss_pred             cc--cccccccccccccc-cccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            22  33457889999998 899999999999999998776443 34467889999999995 568999999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCC-CceeEEEEEcCCC
Q 018293          239 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-AGAVFSVAFSEDS  317 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~v~~~~~~~~~  317 (358)
                      .+...      ......+..|..+|++++|+|++ .+|++|+.||.|++||+++...........| ...+.++.| +++
T Consensus       209 ~~~~~------~~~~~~~~~h~~~v~~l~~s~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~  280 (299)
T d1nr0a2         209 ANNFE------LAHTNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNE  280 (299)
T ss_dssp             GGTTE------ESCCCCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EET
T ss_pred             ccccc------ccccccccccccccccccccccc-cceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCC
Confidence            87632      12334556789999999999998 8999999999999999998765455554444 455666655 456


Q ss_pred             CeEEEEEccCCeEEEEEcc
Q 018293          318 PFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       318 ~~~l~~~~~dg~i~vw~~~  336 (358)
                      + .|++++.||.|++||+.
T Consensus       281 ~-~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         281 T-TIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             T-EEEEEETTSCEEEEECC
T ss_pred             C-EEEEEeCCCEEEEEecc
Confidence            6 48889999999999973

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-34  Score=240.38  Aligned_cols=252  Identities=13%  Similarity=0.132  Sum_probs=193.6

Q ss_pred             CccccCCCceEEecCCCC-eEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCC-cccEEEEecCCC-C
Q 018293           58 PLKDREKGNFMAVGSMEP-AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-TDSVLGLAWNKE-F  134 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~-~  134 (358)
                      +++|+|+++.|+.++.+. .|+.|+.....                         ......+.+| ...|++++|+|+ +
T Consensus        22 ~l~~~~~~~~la~~~~~~~~i~~~~~~~~~-------------------------~~~~~~~~gh~~~~v~~v~fsP~~~   76 (325)
T d1pgua1          22 HLSYDPTTNAIAYPCGKSAFVRCLDDGDSK-------------------------VPPVVQFTGHGSSVVTTVKFSPIKG   76 (325)
T ss_dssp             CCEEETTTTEEEEEETTEEEEEECCSSCCS-------------------------SCSEEEECTTTTSCEEEEEECSSTT
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEEeCCCCC-------------------------ccceEEEeCCCCCCEEEEEEeeCCC
Confidence            344589999999886443 34555543211                         1122234456 568999999984 3


Q ss_pred             CcEEEEEEcCCeEEEEECCCCceee--------eecccccceeeEEEcCCCCcEEEEEe--CCCcEEEEEcccCCCccce
Q 018293          135 RNILASASADKQVKIWDVAAGKCNL--------TLEHHTDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFK  204 (358)
Q Consensus       135 ~~~l~s~~~dg~v~iwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~  204 (358)
                      +.+|++|+.||+|++||+..++...        .+..|..+|.+++|++++ ..+++++  .++.+.+|+..+++.....
T Consensus        77 g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~  155 (325)
T d1pgua1          77 SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDSGNSLGEV  155 (325)
T ss_dssp             CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTTCCEEEEC
T ss_pred             CCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCC-CccceeeccccceEEEEeecccccceee
Confidence            5799999999999999997654332        334578899999999999 6666655  4678999999888777666


Q ss_pred             eeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEE---EeecCCceeEEEecCCCCcEEEEEeC
Q 018293          205 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT---LHAHDKAVCTISYNPLVPNLLATGST  281 (358)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~i~~i~~~~~~~~~l~~~~~  281 (358)
                      ..|...+.+++|+|+++.++++++.|+.+++||....         +....   ...|...|.+++|+|+++.+|++++.
T Consensus       156 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~---------~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~  226 (325)
T d1pgua1         156 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF---------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS  226 (325)
T ss_dssp             CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB---------EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred             eecccccccccccccccceEEEeeccccccccccccc---------ccceecccccCCCCccEEeeeccccceecccccc
Confidence            6788999999999988777889999999999998765         32233   34567889999999987689999999


Q ss_pred             CCcEEEEecCCCCceeeEecCCCCceeEEEEEc---CCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293          282 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS---EDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       282 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                      |+.|++||+++++  .+..+.+|..++..+.|+   |+++ .|++++.|+.|+|||+.+++.+.....+
T Consensus       227 d~~i~iwd~~~~~--~~~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~  292 (325)
T d1pgua1         227 DRKISCFDGKSGE--FLKYIEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVTTSKCVQKWTLD  292 (325)
T ss_dssp             TCCEEEEETTTCC--EEEECCBTTBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ccceeeeeecccc--ccccccccccccccceeeeeccCCC-EEEEEeCCCeEEEEECCCCCEEEEEEec
Confidence            9999999999888  566777777776655555   6788 4889999999999999999887664433

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.7e-33  Score=231.23  Aligned_cols=253  Identities=22%  Similarity=0.296  Sum_probs=209.6

Q ss_pred             CcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEE
Q 018293           47 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL  126 (358)
Q Consensus        47 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  126 (358)
                      ..+.|++|       +|++++||+|+.||.|+|||+.+++..                           ..+..|...|.
T Consensus        56 ~~I~~l~~-------s~~~~~l~sgs~Dg~v~iWd~~~~~~~---------------------------~~~~~~~~~v~  101 (340)
T d1tbga_          56 AKIYAMHW-------GTDSRLLVSASQDGKLIIWDSYTTNKV---------------------------HAIPLRSSWVM  101 (340)
T ss_dssp             SCEEEEEE-------CTTSSEEEEEETTTEEEEEETTTTEEE---------------------------EEEECSCSCEE
T ss_pred             CCEEEEEE-------CCCCCEEEEEECCCceeeeecccceeE---------------------------EEEecccccEE
Confidence            33446655       899999999999999999999764433                           24457999999


Q ss_pred             EEecCCCCCcEEEEEEcCCeEEEEECCCC----ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc
Q 018293          127 GLAWNKEFRNILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  202 (358)
Q Consensus       127 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  202 (358)
                      +++|+|+ +.++++|+.|+.+++|+....    .....+.+|...........+  ..+.....+.....++........
T Consensus       102 ~v~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  178 (340)
T d1tbga_         102 TCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTT  178 (340)
T ss_dssp             EEEECTT-SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEEE
T ss_pred             eeEeecc-ceeeeeecccceeecccccccccccccceecccccccccccccccc--cccccccccccccccccccccccc
Confidence            9999999 679999999999999998654    334556667766666555554  467888889999999887766655


Q ss_pred             ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC
Q 018293          203 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD  282 (358)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d  282 (358)
                      ........+....+.+ ...++++++.|+.|++||+++.         ..+..+.+|...|++++|+|++ .+|++|+.|
T Consensus       179 ~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~---------~~~~~~~~h~~~i~~v~~~p~~-~~l~s~s~d  247 (340)
T d1tbga_         179 TFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREG---------MCRQTFTGHESDINAICFFPNG-NAFATGSDD  247 (340)
T ss_dssp             EEECCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTT---------EEEEEECCCSSCEEEEEECTTS-SEEEEEETT
T ss_pred             cccccceeEeeecccc-ccceeEEeecCceEEEEECCCC---------cEEEEEeCCCCCeEEEEECCCC-CEEEEEeCC
Confidence            5566777888888888 4568999999999999999987         7788899999999999999998 899999999


Q ss_pred             CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccccC
Q 018293          283 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  348 (358)
Q Consensus       283 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  348 (358)
                      |.|++||++............+...|.+++|+|+++ +|++|+.||.|++||+.+++.+..+.+|.
T Consensus       248 ~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~H~  312 (340)
T d1tbga_         248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHD  312 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC-EEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             CeEEEEeecccccccccccccccCceEEEEECCCCC-EEEEEECCCEEEEEECCCCcEEEEEcCCC
Confidence            999999999887655555667788899999999999 48899999999999999998887665553

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.2e-32  Score=226.31  Aligned_cols=237  Identities=14%  Similarity=0.194  Sum_probs=185.9

Q ss_pred             ccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           61 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        61 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      |+|++++|++|+.||.|++||+.+++....                          ...+|...|++++|+|+ +. +++
T Consensus        20 ~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~--------------------------~~~~h~~~v~~v~~~~~-g~-~~~   71 (299)
T d1nr0a2          20 SSADGKTLFSADAEGHINSWDISTGISNRV--------------------------FPDVHATMITGIKTTSK-GD-LFT   71 (299)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEC--------------------------SSCSCSSCEEEEEECTT-SC-EEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCcEEEE--------------------------EcCCCCCcEEEEEeecc-ce-eec
Confidence            389999999999999999999976443321                          22368999999999999 44 567


Q ss_pred             EEcCCeEEEEECCCCce---eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293          141 ASADKQVKIWDVAAGKC---NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  217 (358)
Q Consensus       141 ~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  217 (358)
                      ++.|+.+++|+......   ......+...+.+++|++++ .+++++ .++.+.+|+.....    .......+.+++|+
T Consensus        72 ~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~~~~~-~~~~i~~~~~~~~~----~~~~~~~~~~~~~s  145 (299)
T d1nr0a2          72 VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG-DIAVAA-CYKHIAIYSHGKLT----EVPISYNSSCVALS  145 (299)
T ss_dssp             EETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS-SCEEEE-ESSEEEEEETTEEE----EEECSSCEEEEEEC
T ss_pred             ccceeeEEEeccCCcccccccccccccccccccccccccc-cccccc-cccccccccccccc----cccccccccccccc
Confidence            78899999999865432   22234567788999999998 655554 46789999854321    23345668899999


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce-
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS-  296 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-  296 (358)
                      |+ +.++++|+.||.|++||+++..        ........|...|++++|+|++ .+|++++.|+.|++||+.++... 
T Consensus       146 ~~-~~~l~~g~~dg~i~~~d~~~~~--------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~  215 (299)
T d1nr0a2         146 ND-KQFVAVGGQDSKVHVYKLSGAS--------VSEVKTIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFELA  215 (299)
T ss_dssp             TT-SCEEEEEETTSEEEEEEEETTE--------EEEEEEEECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEES
T ss_pred             cc-cccccccccccccccccccccc--------cccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence            95 5689999999999999998762        2233456788999999999998 89999999999999999876532 


Q ss_pred             eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      ....+..|...|++++|+|+++ +|++|+.||.|++||+.++....
T Consensus       216 ~~~~~~~h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~~~~~~  260 (299)
T d1nr0a2         216 HTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSDHP  260 (299)
T ss_dssp             CCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTTSCC
T ss_pred             cccccccccccccccccccccc-ceEEEcCCCEEEEEECCCCCcce
Confidence            2345667899999999999999 58999999999999998876543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-31  Score=224.63  Aligned_cols=294  Identities=19%  Similarity=0.241  Sum_probs=208.6

Q ss_pred             ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEc
Q 018293            3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDL   82 (358)
Q Consensus         3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~   82 (358)
                      +++++++|++|..++     .|.+|+...++....+..|    ...+.+++|       +|+ ++|++|+.||.|++|+.
T Consensus        19 ~~~~~~~l~tgs~Dg-----~i~vWd~~~~~~~~~l~~H----~~~V~~l~~-------s~~-~~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2          19 LQFEDNYVITGADDK-----MIRVYDSINKKFLLQLSGH----DGGVWALKY-------AHG-GILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEETTEEEEEETTT-----EEEEEETTTTEEEEEEECC----SSCEEEEEE-------ETT-TEEEEEETTCCEEEEET
T ss_pred             EEECCCEEEEEeCCC-----eEEEEECCCCcEEEEEECC----CCCEEEEEE-------cCC-CEEEEEecccccccccc
Confidence            567899999998777     7888888765332333333    334456666       564 58999999999999998


Q ss_pred             ccccCcCceeec--------------------CCcccccccccccC--------------------CceeccccccCCCc
Q 018293           83 DVIDEVQPHVIL--------------------GGIDEEKKKKKSKK--------------------GKKSSIKYKKGSHT  122 (358)
Q Consensus        83 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~h~  122 (358)
                      ............                    ...+.....+....                    ............|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d1nexb2          82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  161 (355)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred             cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence            765432211100                    00000000000000                    00111111222344


Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcc
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  202 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  202 (358)
                      ..+.+...  + +.+++++..|+.|++||+.+++.+....++...+.++.|+|++ ..+++++.|+.|++||++++....
T Consensus       162 ~~v~~~~~--~-~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~  237 (355)
T d1nexb2         162 ASVRTVSG--H-GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMY  237 (355)
T ss_dssp             SCEEEEEE--E-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTCCEEE
T ss_pred             cccccccc--c-cceeeeecccceeeeeecccccceeeeeccccccccccccccc-eeeecccccceEEeeecccccccc
Confidence            44544433  3 4589999999999999999999999998899999999999999 889999999999999999988877


Q ss_pred             ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC
Q 018293          203 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD  282 (358)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d  282 (358)
                      ....|...|.++++++   +++++++.||.|++||+++.           ...+..|...+.++.+.+.++.++++|+ |
T Consensus       238 ~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~g~-d  302 (355)
T d1nexb2         238 TLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDY-----------SRKFSYHHTNLSAITTFYVSDNILVSGS-E  302 (355)
T ss_dssp             EECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTC-----------CEEEEEECTTCCCCCEEEECSSEEEEEE-T
T ss_pred             cccccccccccccccc---ceeeeeeccccccccccccc-----------ceecccccCCceEEEEEcCCCCEEEEEe-C
Confidence            7778899999999975   48999999999999999865           2345567777777655443436766665 8


Q ss_pred             CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          283 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       283 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      +.|++||+++++... ..+.+|..+|.+++|+|+.  ++++++.||.++||.+
T Consensus       303 ~~i~vwd~~tg~~~~-~~~~~~~~~V~~v~~~~~~--~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         303 NQFNIYNLRSGKLVH-ANILKDADQIWSVNFKGKT--LVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TEEEEEETTTCCBCC-SCTTTTCSEEEEEEEETTE--EEEEEESSSCEEEEEE
T ss_pred             CEEEEEECCCCCEEE-EEecCCCCCEEEEEEcCCe--EEEEEECCCcEEEEEE
Confidence            999999999988421 2456789999999999863  6888999998766543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-31  Score=226.68  Aligned_cols=263  Identities=14%  Similarity=0.224  Sum_probs=180.8

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccC-CCcccEEEEecCCCCCcEEEEEE
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKG-SHTDSVLGLAWNKEFRNILASAS  142 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~  142 (358)
                      .++++++|+.|++|+|||..+.+...+....                ......... .|......+..+.....++++++
T Consensus        23 ~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_          23 CNSFTVSCSGDGYLKVWDNKLLDNENPKDKS----------------YSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             CSSEEEEEETTSEEEEEESBCCTTCCGGGGE----------------EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             eCCEEEEEECCCeEEEEECCCCCCCccccee----------------EeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            4579999999999999998765433221000                000000000 12223344444444355788999


Q ss_pred             cCCeEEEEECCCCceeeee----------cccccceeeEEEcCCC----CcEEEEEeCCCcEEEEEcccCCCcc------
Q 018293          143 ADKQVKIWDVAAGKCNLTL----------EHHTDKVQAVAWNHHS----PQILLSGSFDRSVVMKDARISTHSG------  202 (358)
Q Consensus       143 ~dg~v~iwd~~~~~~~~~~----------~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~------  202 (358)
                      .||.|++|++........+          ..+...+..++|.++.    ..++++++.||.+++|++.......      
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            9999999998644322111          2244567788887754    2678999999999999986432100      


Q ss_pred             ------------ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecC
Q 018293          203 ------------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  270 (358)
Q Consensus       203 ------------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  270 (358)
                                  ....+...+.+++|+|++  ++++|+.||.|++||+.+++...   .......+.+|..+|++++|+|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~---~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLY---NFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEE---EEECCC---CCCCCEEEEEECS
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeeccccccc---ccccccccccccceEEEccccc
Confidence                        011223458899999954  89999999999999998762100   0011224457899999999999


Q ss_pred             CCCcEEEEEeCCCc---EEEEecCCCCceeeE-----------ecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          271 LVPNLLATGSTDKM---VKLWDLSNNQPSCIA-----------SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       271 ~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      ++ ++|++|+.|++   |++||+++++.....           ...+|...|++++|+|+++ +|++|+.|++|++||+.
T Consensus       242 dg-~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         242 QG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             ST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEETT
T ss_pred             cc-ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEEEECC
Confidence            98 89999999875   899999987643222           2247899999999999999 59999999999999999


Q ss_pred             CCCccccccccCc
Q 018293          337 SDAGISNRFSKYS  349 (358)
Q Consensus       337 ~~~~~~~~~~~~~  349 (358)
                      +++++..+-+|..
T Consensus       320 ~g~~~~~l~gH~~  332 (393)
T d1sq9a_         320 TKERITTLNMHCD  332 (393)
T ss_dssp             TTEEEEEEECCGG
T ss_pred             CCCEEEEECCcCC
Confidence            9998877665543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-31  Score=222.33  Aligned_cols=254  Identities=13%  Similarity=0.146  Sum_probs=186.4

Q ss_pred             ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      ++|+|++++||+|+.||+|+|||+++......                        .....+|..+|.+++|+|+++.+|
T Consensus        17 l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~------------------------~~~~~~h~~~V~~v~f~~~~~~~l   72 (342)
T d1yfqa_          17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD------------------------LLQSLRYKHPLLCCNFIDNTDLQI   72 (342)
T ss_dssp             EEEEGGGTEEEEEETTSEEEEEEEETTTTEEE------------------------EEEEEECSSCEEEEEEEESSSEEE
T ss_pred             EEEeCCCCEEEEEECCCeEEEEEccCCCcceE------------------------EEEecCCCCCEEEEEEeCCCCCEE
Confidence            34489999999999999999999975432211                        112235999999999999867799


Q ss_pred             EEEEcCCeEEEEECCCCceeeeecccccceee-EEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeee------cCCe
Q 018293          139 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQA-VAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV------AADV  211 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~i  211 (358)
                      ++|+.||.|++|++..+........+...... ..+.++. ..+++++.++.+++||++...........      ....
T Consensus        73 ~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (342)
T d1yfqa_          73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGD-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKN  151 (342)
T ss_dssp             EEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETT-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCC
T ss_pred             EEcccccceeeeeccccccccccccccccccccccccccc-ccccccccccccceeeccccccceeeeccccccccccee
Confidence            99999999999999988776666555444443 3444444 88999999999999999876554322221      1223


Q ss_pred             eeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecC
Q 018293          212 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  291 (358)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~  291 (358)
                      ....+.+ ....+++++.|+.|++||++.....      ........+...+.+..+.+..+..+++++.||.+.+|+..
T Consensus       152 ~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~  224 (342)
T d1yfqa_         152 KIFTMDT-NSSRLIVGMNNSQVQWFRLPLCEDD------NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD  224 (342)
T ss_dssp             CEEEEEE-CSSEEEEEESTTEEEEEESSCCTTC------CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred             eeeeeec-cCCceeeecCCCcEEEEecccCccc------ceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEec
Confidence            4455556 4558999999999999999876431      22233344455667777777655899999999999999986


Q ss_pred             CCCce-------------eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          292 NNQPS-------------CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       292 ~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      .....             .......|...+++++|+|++++ |++|+.||.|++||+.+++.+.++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-lasg~~Dg~v~vWD~~~~~~l~~~~  290 (342)
T d1yfqa_         225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC-EEEEETTSCEEEEETTTTEEEEECC
T ss_pred             CCcceeeccccceeeeeeeccCCCcccccceeEEecCCccE-EEEECCCCEEEEEECCCCcEEEEec
Confidence            54211             01112346678999999999995 9999999999999999988876543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-30  Score=216.14  Aligned_cols=295  Identities=21%  Similarity=0.269  Sum_probs=203.3

Q ss_pred             ccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEc
Q 018293            3 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDL   82 (358)
Q Consensus         3 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~   82 (358)
                      ++++|++|++|+.++     .|.+|+...++....+..|    ...+.++.|       ++  ++|++|+.|+.+++|+.
T Consensus        23 ~~~~g~~l~sgs~Dg-----~i~vWd~~~~~~~~~~~~h----~~~V~~v~~-------~~--~~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2          23 LQFCGNRIVSGSDDN-----TLKVWSAVTGKCLRTLVGH----TGGVWSSQM-------RD--NIIISGSTDRTLKVWNA   84 (342)
T ss_dssp             EEEETTEEEEEETTS-----CEEEEETTTCCEEEECCCC----SSCEEEEEE-------ET--TEEEEEETTSCEEEEET
T ss_pred             EEECCCEEEEEeCCC-----eEEEEECCCCCEEEEEeCC----CCCEEEEEe-------CC--Cccccceeccccccccc
Confidence            678899999997776     7788888765332222223    223345544       44  49999999999999998


Q ss_pred             ccccCcCceeecCCccccc-----cc--------ccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEE
Q 018293           83 DVIDEVQPHVILGGIDEEK-----KK--------KKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  149 (358)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i  149 (358)
                      ...................     ..        ..............+..+.......  .+. ...+++++.|+.|++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~d~~i~~  161 (342)
T d2ovrb2          85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV--QYD-GRRVVSGAYDFMVKV  161 (342)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE--EEC-SSCEEEEETTSCEEE
T ss_pred             ccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceee--ccc-cceeeeecCCCeEEE
Confidence            7543322111000000000     00        0000000011111111122222222  223 347889999999999


Q ss_pred             EECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEec
Q 018293          150 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE  229 (358)
Q Consensus       150 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  229 (358)
                      ||....+.+..+.+|...+..+.+  ++ ..+++++.||.|++||++..+.......+...+.++.+++   +++++++.
T Consensus       162 ~d~~~~~~~~~~~~~~~~~~~~~~--~~-~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~s~  235 (342)
T d2ovrb2         162 WDPETETCLHTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVSGNA  235 (342)
T ss_dssp             EEGGGTEEEEEECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET---TEEEEEET
T ss_pred             eecccceeeEEEcCcccccccccC--CC-CEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC---CEEEEEcC
Confidence            999999999999988877766655  45 7899999999999999999887776777888899888876   48999999


Q ss_pred             CCeEEEEEcccCCCCCCCCCCCccEEEee---cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe---cCC
Q 018293          230 DGTIKGFDIRTAKSDPDSTSQQSSFTLHA---HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS---RNP  303 (358)
Q Consensus       230 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~  303 (358)
                      ||.|++||+...         +....+..   |...+.++.+++   +++++|+.||.|++||+++++......   ..+
T Consensus       236 d~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~  303 (342)
T d2ovrb2         236 DSTVKIWDIKTG---------QCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG  303 (342)
T ss_dssp             TSCEEEEETTTC---------CEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGG
T ss_pred             CCEEEEEecccc---------cccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCC
Confidence            999999999876         44445443   556677777764   789999999999999999988533322   135


Q ss_pred             CCceeEEEEEcCCCCeEEEEEccCCe----EEEEEccC
Q 018293          304 KAGAVFSVAFSEDSPFVLAIGGSKGK----LEIWDTLS  337 (358)
Q Consensus       304 ~~~~v~~~~~~~~~~~~l~~~~~dg~----i~vw~~~~  337 (358)
                      |...|++++|+|++. ++++|+.||+    |++||+..
T Consensus       304 ~~~~v~~v~~s~~~~-~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         304 SGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             GTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCCEEEEEECCCCC-EEEEEeCCCCCeeEEEEEeCCC
Confidence            678899999999998 6999999885    99999864

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.9e-30  Score=221.45  Aligned_cols=232  Identities=14%  Similarity=0.183  Sum_probs=163.0

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC----CcEEE
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF----RNILA  139 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~l~  139 (358)
                      ++.++++++.||.|++|++............                 .........+...+..++|.++.    ..+++
T Consensus        78 ~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (393)
T d1sq9a_          78 ELCLVATTSFSGDLLFYRITREDETKKVIFE-----------------KLDLLDSDMKKHSFWALKWGASNDRLLSHRLV  140 (393)
T ss_dssp             EEEEEEEEETTSCEEEEEEEECTTTCCEEEE-----------------EECCSCTTGGGSCEEEEEEECCC----CEEEE
T ss_pred             CCcEEEEEeCCCcEEEEEccCCCceeeeecc-----------------ccceeeeccCCCceEEEEEecCCCcccccEEE
Confidence            4567889999999999998765543322110                 01111222355667788887653    35889


Q ss_pred             EEEcCCeEEEEECCCCc------------------eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc
Q 018293          140 SASADKQVKIWDVAAGK------------------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS  201 (358)
Q Consensus       140 s~~~dg~v~iwd~~~~~------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  201 (358)
                      +++.||++++|++....                  .......+...+.+++|+|++  ++++|+.||+|++||+++++..
T Consensus       141 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~  218 (393)
T d1sq9a_         141 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL  218 (393)
T ss_dssp             EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE
T ss_pred             EEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccc
Confidence            99999999999975321                  011122345668899999986  7899999999999999877643


Q ss_pred             c------ceeeecCCeeeEEEcCCCCCeEEEEecCC---eEEEEEcccCCCCCC----CCCCCccEEEeecCCceeEEEe
Q 018293          202 G------FKWAVAADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPD----STSQQSSFTLHAHDKAVCTISY  268 (358)
Q Consensus       202 ~------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~~~----~~~~~~~~~~~~~~~~i~~i~~  268 (358)
                      .      ....|..+|.+++|+|+ +.+|++|+.|+   .|++||++++.....    .........+.+|...|++++|
T Consensus       219 ~~~~~~~~l~~h~~~V~~l~~spd-g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~f  297 (393)
T d1sq9a_         219 YNFESQHSMINNSNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF  297 (393)
T ss_dssp             EEEECCC---CCCCCEEEEEECSS-TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEE
T ss_pred             cccccccccccccceEEEcccccc-cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeecc
Confidence            2      23457889999999995 56899998887   499999987632110    0001122233579999999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeE----EEEEcCCCC
Q 018293          269 NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF----SVAFSEDSP  318 (358)
Q Consensus       269 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~  318 (358)
                      +|++ ++|++|+.|++|++||+++++  ++..+.+|...|.    .++|+|++.
T Consensus       298 spd~-~~l~S~s~D~~v~vWd~~~g~--~~~~l~gH~~~v~~~~~~~~~~~~~~  348 (393)
T d1sq9a_         298 NDSG-ETLCSAGWDGKLRFWDVKTKE--RITTLNMHCDDIEIEEDILAVDEHGD  348 (393)
T ss_dssp             CSSS-SEEEEEETTSEEEEEETTTTE--EEEEEECCGGGCSSGGGCCCBCTTSC
T ss_pred             CCCC-CeeEEECCCCEEEEEECCCCC--EEEEECCcCCcccCCccEEEECCCCC
Confidence            9998 899999999999999999987  5666777876554    356666665

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.2e-30  Score=213.30  Aligned_cols=235  Identities=24%  Similarity=0.363  Sum_probs=178.1

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      +++|++||||+.||+|+|||+.+++.                           ...+.+|...|.+++|+|+   +|++|
T Consensus        24 ~~~g~~l~sgs~Dg~i~vWd~~~~~~---------------------------~~~~~~h~~~V~~v~~~~~---~l~s~   73 (342)
T d2ovrb2          24 QFCGNRIVSGSDDNTLKVWSAVTGKC---------------------------LRTLVGHTGGVWSSQMRDN---IIISG   73 (342)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTCCE---------------------------EEECCCCSSCEEEEEEETT---EEEEE
T ss_pred             EECCCEEEEEeCCCeEEEEECCCCCE---------------------------EEEEeCCCCCEEEEEeCCC---ccccc
Confidence            45799999999999999999976443                           3356689999999999875   89999


Q ss_pred             EcCCeEEEEECCCCceeeeecccccceee--------------------------------------EEEcCCCCcEEEE
Q 018293          142 SADKQVKIWDVAAGKCNLTLEHHTDKVQA--------------------------------------VAWNHHSPQILLS  183 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~--------------------------------------~~~~~~~~~~l~~  183 (358)
                      +.|+.+++|+............+...+..                                      ....+.. ..+++
T Consensus        74 s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  152 (342)
T d2ovrb2          74 STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG-RRVVS  152 (342)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECS-SCEEE
T ss_pred             eecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecccc-ceeee
Confidence            99999999998765443333222211111                                      1112222 46778


Q ss_pred             EeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCce
Q 018293          184 GSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  263 (358)
Q Consensus       184 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i  263 (358)
                      ++.|+.+++||.+..........+...+..+.++   +..+++++.||.|++||++..         ..+..+..|...+
T Consensus       153 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~dg~i~~~d~~~~---------~~~~~~~~~~~~v  220 (342)
T d2ovrb2         153 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD---GIHVVSGSLDTSIRVWDVETG---------NCIHTLTGHQSLT  220 (342)
T ss_dssp             EETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC---SSEEEEEETTSCEEEEETTTC---------CEEEEECCCCSCE
T ss_pred             ecCCCeEEEeecccceeeEEEcCcccccccccCC---CCEEEEEeCCCeEEEeecccc---------eeeeEecccccce
Confidence            8888889999888776655455555555555553   458999999999999999987         7788899999999


Q ss_pred             eEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEe-cCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          264 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       264 ~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      .++.+++   ++|++|+.|+.|++||+...+...... ...|...+.++.++++   ++++|+.||.|++||+++++.+.
T Consensus       221 ~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~s~Dg~i~iwd~~tg~~i~  294 (342)
T d2ovrb2         221 SGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN---FVITSSDDGTVKLWDLKTGEFIR  294 (342)
T ss_dssp             EEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE
T ss_pred             eEEecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCC---eeEEEcCCCEEEEEECCCCCEEE
Confidence            9988875   689999999999999999877433222 3346677777777654   58899999999999999998877


Q ss_pred             ccc
Q 018293          343 NRF  345 (358)
Q Consensus       343 ~~~  345 (358)
                      ++.
T Consensus       295 ~~~  297 (342)
T d2ovrb2         295 NLV  297 (342)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.8e-30  Score=216.50  Aligned_cols=232  Identities=19%  Similarity=0.298  Sum_probs=183.3

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      ++++++||+|+.||+|+|||+.+++.                           ...+.+|.+.|++++|+|+ + +|++|
T Consensus        20 ~~~~~~l~tgs~Dg~i~vWd~~~~~~---------------------------~~~l~~H~~~V~~l~~s~~-~-~l~s~   70 (355)
T d1nexb2          20 QFEDNYVITGADDKMIRVYDSINKKF---------------------------LLQLSGHDGGVWALKYAHG-G-ILVSG   70 (355)
T ss_dssp             EEETTEEEEEETTTEEEEEETTTTEE---------------------------EEEEECCSSCEEEEEEETT-T-EEEEE
T ss_pred             EECCCEEEEEeCCCeEEEEECCCCcE---------------------------EEEEECCCCCEEEEEEcCC-C-EEEEE
Confidence            34789999999999999999975433                           3356689999999999986 4 89999


Q ss_pred             EcCCeEEEEECCCCceeeeecccc--cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee--------------
Q 018293          142 SADKQVKIWDVAAGKCNLTLEHHT--DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--------------  205 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------  205 (358)
                      +.|++|++|++...+.........  .......+.+++ ..+++++.|+.|++||+++........              
T Consensus        71 s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (355)
T d1nexb2          71 STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE  149 (355)
T ss_dssp             ETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEESCTTT
T ss_pred             eccccccccccccccccccccccccccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceeccceecccc
Confidence            999999999999887766554333  344556677777 889999999999999998654322110              


Q ss_pred             ---------eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEE
Q 018293          206 ---------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  276 (358)
Q Consensus       206 ---------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l  276 (358)
                               .+...+.  .+.+ ++++++++..|+.+++||+++.         +.+.....+...+.++.++|++ .++
T Consensus       150 ~~~~~~~~~~~~~~v~--~~~~-~~~~~~~~~~d~~i~~~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~~  216 (355)
T d1nexb2         150 NPYFVGVLRGHMASVR--TVSG-HGNIVVSGSYDNTLIVWDVAQM---------KCLYILSGHTDRIYSTIYDHER-KRC  216 (355)
T ss_dssp             CTTEEEEEECCSSCEE--EEEE-ETTEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEEETTT-TEE
T ss_pred             ccceeeeeeecccccc--cccc-ccceeeeecccceeeeeecccc---------cceeeeeccccccccccccccc-eee
Confidence                     0111222  2333 3468999999999999999887         6677788888999999999998 899


Q ss_pred             EEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          277 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       277 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      ++++.|+.|++||++++.  .+..+.+|...|.+++|+++   .|++|+.||.|++||+.+....
T Consensus       217 ~~~~~d~~i~i~d~~~~~--~~~~~~~h~~~v~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~  276 (355)
T d1nexb2         217 ISASMDTTIRIWDLENGE--LMYTLQGHTALVGLLRLSDK---FLVSAAADGSIRGWDANDYSRK  276 (355)
T ss_dssp             EEEETTSCEEEEETTTCC--EEEEECCCSSCCCEEEECSS---EEEEECTTSEEEEEETTTCCEE
T ss_pred             ecccccceEEeeeccccc--cccccccccccccccccccc---eeeeeeccccccccccccccee
Confidence            999999999999999987  56778899999999999764   5889999999999999877654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-29  Score=205.39  Aligned_cols=264  Identities=20%  Similarity=0.350  Sum_probs=198.0

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEE
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD   81 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~   81 (358)
                      .++|+++.|++|+.++     .|.+|+...++....+..|.    ..+.++.         +++++|++|+.||.|++|+
T Consensus        20 c~~~d~~~l~sgs~Dg-----~i~vWd~~~~~~~~~l~~H~----~~V~~v~---------~~~~~l~s~s~D~~i~~~~   81 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDN-----TIKIWDKNTLECKRILTGHT----GSVLCLQ---------YDERVIITGSSDSTVRVWD   81 (293)
T ss_dssp             EEECCSSEEEEEESSS-----CEEEEESSSCCEEEEECCCS----SCEEEEE---------CCSSEEEEEETTSCEEEEE
T ss_pred             EEEEcCCEEEEEeCCC-----eEEEEECCCCcEEEEEecCC----CCEeeee---------cccceeecccccccccccc
Confidence            3678999999998887     77888877653333333332    2234553         3688999999999999999


Q ss_pred             cccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCce---e
Q 018293           82 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC---N  158 (358)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~  158 (358)
                      +..+.....                           ...+......  +.+. ...++++..++.+.+|+......   .
T Consensus        82 ~~~~~~~~~---------------------------~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (293)
T d1p22a2          82 VNTGEMLNT---------------------------LIHHCEAVLH--LRFN-NGMMVTCSKDRSIAVWDMASPTDITLR  131 (293)
T ss_dssp             SSSCCEEEE---------------------------ECCCCSCEEE--EECC-TTEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred             ccccccccc---------------------------cccccccccc--cccc-ccceeecccccceeEeecccccccccc
Confidence            975443221                           1112222222  2333 34789999999999999987643   4


Q ss_pred             eeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEc
Q 018293          159 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  238 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~  238 (358)
                      ..+..|...+..+.+.+   ..+++++.|+.+++||+++.+.......+...+..+.+++   ..+++++.||.|++||+
T Consensus       132 ~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~  205 (293)
T d1p22a2         132 RVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDI  205 (293)
T ss_dssp             EEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEET
T ss_pred             ccccccccccccceecc---cccccccCCCceeeecCCCCcEEEEEcccccccccccCCC---CeEEEecCCCEEEEEec
Confidence            44566788888888765   4588999999999999998887766666777788887764   48999999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC-------ceeeEecCCCCceeEEE
Q 018293          239 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ-------PSCIASRNPKAGAVFSV  311 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~~v~~~  311 (358)
                      ++.         ..+.....|...+..+.  +++ .+|++|+.||.|++||+....       ...+..+.+|.+.|+++
T Consensus       206 ~~~---------~~~~~~~~~~~~v~~~~--~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v  273 (293)
T d1p22a2         206 ECG---------ACLRVLEGHEELVRCIR--FDN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL  273 (293)
T ss_dssp             TTC---------CEEEEECCCSSCEEEEE--CCS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred             ccc---------eeeeeecccceeeeecc--ccc-eEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEE
Confidence            987         67778888888877654  444 799999999999999975421       23567788999999999


Q ss_pred             EEcCCCCeEEEEEccCCeEEEEE
Q 018293          312 AFSEDSPFVLAIGGSKGKLEIWD  334 (358)
Q Consensus       312 ~~~~~~~~~l~~~~~dg~i~vw~  334 (358)
                      +|+  +. .|++|+.||+|++||
T Consensus       274 ~~d--~~-~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         274 QFD--EF-QIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEC--SS-CEEECCSSSEEEEEC
T ss_pred             EEc--CC-EEEEEecCCEEEEeC
Confidence            995  44 489999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=6.7e-31  Score=221.27  Aligned_cols=288  Identities=9%  Similarity=0.058  Sum_probs=205.8

Q ss_pred             cccC-CCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCC--eEE
Q 018293            2 TINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP--AIE   78 (358)
Q Consensus         2 ~~~p-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--~i~   78 (358)
                      +||| +|++++++ ..+     ++++|+...+....  ..|    ...+.++.|       +|||++|++++.+.  .|+
T Consensus         9 ~fSP~dG~~~a~~-~~g-----~v~v~d~~~~~~~~--~~~----~~~v~~~~~-------spDg~~l~~~~~~~g~~v~   69 (360)
T d1k32a3           9 DFSPLDGDLIAFV-SRG-----QAFIQDVSGTYVLK--VPE----PLRIRYVRR-------GGDTKVAFIHGTREGDFLG   69 (360)
T ss_dssp             EEEECGGGCEEEE-ETT-----EEEEECTTSSBEEE--CSC----CSCEEEEEE-------CSSSEEEEEEEETTEEEEE
T ss_pred             cccCCCCCEEEEE-ECC-----eEEEEECCCCcEEE--ccC----CCCEEEEEE-------CCCCCEEEEEEcCCCCEEE
Confidence            5899 89999888 444     89999987652221  122    233345555       99999998776553  799


Q ss_pred             EEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCcee
Q 018293           79 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN  158 (358)
Q Consensus        79 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  158 (358)
                      +||..+++.                            ..+..|...|.+++|+|+ +++|++++.++.+++|++.+++..
T Consensus        70 v~d~~~~~~----------------------------~~~~~~~~~v~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~  120 (360)
T d1k32a3          70 IYDYRTGKA----------------------------EKFEENLGNVFAMGVDRN-GKFAVVANDRFEIMTVDLETGKPT  120 (360)
T ss_dssp             EEETTTCCE----------------------------EECCCCCCSEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEECCCCcE----------------------------EEeeCCCceEEeeeeccc-ccccceecccccccccccccccee
Confidence            999975332                            234469999999999999 679999999999999999999998


Q ss_pred             eeecccccceeeEEEcCCCCcEEEEEe----------CCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEe
Q 018293          159 LTLEHHTDKVQAVAWNHHSPQILLSGS----------FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL  228 (358)
Q Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  228 (358)
                      ..+..|...+.+++|+|++ ++|+.+.          .++.+++||+.+++... ...+...+..++|+|++ ..+++++
T Consensus       121 ~~~~~~~~~~~~~~~spdg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg-~~l~~~s  197 (360)
T d1k32a3         121 VIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADS-KNLYYLS  197 (360)
T ss_dssp             EEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTS-CEEEEEE
T ss_pred             eeeecccccccchhhccce-eeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCC-CEEEEEe
Confidence            8898899999999999999 6676543          34568999998765543 34556778889999965 5888999


Q ss_pred             cCCeEEEEEcccCCCCCC----------------------------------CC----------CCCccEEEeecCCcee
Q 018293          229 EDGTIKGFDIRTAKSDPD----------------------------------ST----------SQQSSFTLHAHDKAVC  264 (358)
Q Consensus       229 ~dg~i~i~d~~~~~~~~~----------------------------------~~----------~~~~~~~~~~~~~~i~  264 (358)
                      .++.+.+||.........                                  ..          .......+..+...+.
T Consensus       198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (360)
T d1k32a3         198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL  277 (360)
T ss_dssp             SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEE
T ss_pred             CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCce
Confidence            999999998654321000                                  00          0000111222233333


Q ss_pred             EEEecCCCC--cEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          265 TISYNPLVP--NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       265 ~i~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      .+.+.+.+.  .++++++.++.|++||+.+++.   ..   |.+.|.+++|+|||++ |++++.||.|++||+.+++...
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~---~~~~v~~~~~SpDG~~-l~~~~~Dg~i~v~d~~~~~~~~  350 (360)
T d1k32a3         278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV---TE---VKNNLTDLRLSADRKT-VMVRKDDGKIYTFPLEKPEDER  350 (360)
T ss_dssp             EEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE---EE---EEEEEEEEEECTTSCE-EEEEETTSCEEEEESSCTTSCE
T ss_pred             EEEEEecCCCeeEEEecCCCCEEEEEECCCCeE---EE---ecCCcCEEEECCCCCE-EEEEECCCeEEEEECCCCCcce
Confidence            333333321  2456677788999999988763   22   3456999999999995 8889999999999999988766


Q ss_pred             ccccc
Q 018293          343 NRFSK  347 (358)
Q Consensus       343 ~~~~~  347 (358)
                      .....
T Consensus       351 ~~~~d  355 (360)
T d1k32a3         351 TVETD  355 (360)
T ss_dssp             ECCCC
T ss_pred             EEEec
Confidence            54433

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-29  Score=206.73  Aligned_cols=194  Identities=15%  Similarity=0.156  Sum_probs=141.7

Q ss_pred             cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCC-CcEEEEEcccCCCcc
Q 018293          124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-RSVVMKDARISTHSG  202 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~  202 (358)
                      .+.+++++++ +..+ ..+.++.+.+|+..+++.+..+..+ .++  .++++++ ..+++++.+ +.+++|++...+...
T Consensus        82 ~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~-~~~~v~~~~~~~v~~~~~~~~~~~~  155 (287)
T d1pgua2          82 QPKVASANND-GFTA-VLTNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQ-NYVAVGLEEGNTIQVFKLSDLEVSF  155 (287)
T ss_dssp             CEEEEEECSS-SEEE-EEETTSEEEEEETTTCCEEEEEECS-SCE--EEEEECS-SEEEEEETTTSCEEEEETTEEEEEE
T ss_pred             ceeeeeeccC-CceE-EEeecccceeeeccceeeeeecccc-cee--eeeeccC-cceeeeccccceeeeeeccccceee
Confidence            4556666665 3333 3344556667776666666665532 333  4556666 556666655 579999987654332


Q ss_pred             c-eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC---------
Q 018293          203 F-KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV---------  272 (358)
Q Consensus       203 ~-~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~---------  272 (358)
                      . ...+...+++++|+|+ +.++++|+.||.|++||+.+..        .....+..|...|.+++|+|.+         
T Consensus       156 ~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~--------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~  226 (287)
T d1pgua2         156 DLKTPLRAKPSYISISPS-ETYIAAGDVMGKILLYDLQSRE--------VKTSRWAFRTSKINAISWKPAEKGANEEEIE  226 (287)
T ss_dssp             ECSSCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTE--------EEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred             eeeeccCCceeEEEeccC-ccccccccccccccceeecccc--------cccccccccccccceeeecccccccccccCC
Confidence            2 2346678999999995 4589999999999999998762        2223356789999999998853         


Q ss_pred             CcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          273 PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       273 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                      ..+|++|+.|+.|++||+++... .+....+|.+.|++++|+|++.  |++++.||.|++|++
T Consensus       227 ~~~l~sgs~D~~i~iw~~~~~~~-~~~~~~~h~~~V~~v~~~~~~~--l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         227 EDLVATGSLDTNIFIYSVKRPMK-IIKALNAHKDGVNNLLWETPST--LVSSGADACIKRWNV  286 (287)
T ss_dssp             CCEEEEEETTSCEEEEESSCTTC-CEEETTSSTTCEEEEEEEETTE--EEEEETTSCEEEEEE
T ss_pred             CCeeEeecCCCeEEEEECCCCCe-EEEEeCCCCCCeEEEEECCCCE--EEEEECCCeEEEEEE
Confidence            36899999999999999987542 4666788999999999999874  778999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-28  Score=198.97  Aligned_cols=226  Identities=26%  Similarity=0.456  Sum_probs=179.6

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      +++|++||+|+.||+|+|||+.+++.                           ...+.+|.+.|++++|+   +++|++|
T Consensus        22 ~~d~~~l~sgs~Dg~i~vWd~~~~~~---------------------------~~~l~~H~~~V~~v~~~---~~~l~s~   71 (293)
T d1p22a2          22 QYDDQKIVSGLRDNTIKIWDKNTLEC---------------------------KRILTGHTGSVLCLQYD---ERVIITG   71 (293)
T ss_dssp             ECCSSEEEEEESSSCEEEEESSSCCE---------------------------EEEECCCSSCEEEEECC---SSEEEEE
T ss_pred             EEcCCEEEEEeCCCeEEEEECCCCcE---------------------------EEEEecCCCCEeeeecc---cceeecc
Confidence            56899999999999999999975433                           33566899999999985   4599999


Q ss_pred             EcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce---eeecCCeeeEEEcC
Q 018293          142 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---WAVAADVESLAWDP  218 (358)
Q Consensus       142 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~  218 (358)
                      +.|+.|++|++..+........+.....  .+.+.. ..++++..++.+.+||..........   ..+...+..+.+.+
T Consensus        72 s~D~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  148 (293)
T d1p22a2          72 SSDSTVRVWDVNTGEMLNTLIHHCEAVL--HLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD  148 (293)
T ss_dssp             ETTSCEEEEESSSCCEEEEECCCCSCEE--EEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET
T ss_pred             cccccccccccccccccccccccccccc--cccccc-cceeecccccceeEeeccccccccccccccccccccccceecc
Confidence            9999999999999887776664444333  333444 57899999999999999877654322   34556677777755


Q ss_pred             CCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceee
Q 018293          219 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  298 (358)
Q Consensus       219 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  298 (358)
                         ..+++++.|+.+++||+++.         +.+..+.++...+..+.+++   .++++++.||.|++||+++.+  .+
T Consensus       149 ---~~~~~~s~d~~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~--~~  211 (293)
T d1p22a2         149 ---KYIVSASGDRTIKVWNTSTC---------EFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGA--CL  211 (293)
T ss_dssp             ---TEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCC--EE
T ss_pred             ---cccccccCCCceeeecCCCC---------cEEEEEcccccccccccCCC---CeEEEecCCCEEEEEecccce--ee
Confidence               47888999999999999987         77888888988888888874   689999999999999999887  45


Q ss_pred             EecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          299 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       299 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                      .....+...+..  +++++. .|++|+.||.|++||+.++..
T Consensus       212 ~~~~~~~~~v~~--~~~~~~-~l~sg~~dg~i~iwd~~~~~~  250 (293)
T d1p22a2         212 RVLEGHEELVRC--IRFDNK-RIVSGAYDGKIKVWDLVAALD  250 (293)
T ss_dssp             EEECCCSSCEEE--EECCSS-EEEEEETTSCEEEEEHHHHTS
T ss_pred             eeecccceeeee--ccccce-EEEEEcCCCEEEEEECCCCcc
Confidence            667777777765  455666 588999999999999876443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.5e-29  Score=206.43  Aligned_cols=290  Identities=14%  Similarity=0.143  Sum_probs=195.6

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCC-CceEEecCCCCeEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAVGSMEPAIEI   79 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~v   79 (358)
                      |+|+|++++|++|+.++     .|.+|+...... .............+.|+.|       +|+ +.+|++|+.||.|++
T Consensus        17 l~fsp~~~~L~s~s~Dg-----~v~iwd~~~~~~-~~~~~~~~~h~~~V~~v~f-------~~~~~~~l~sg~~d~~v~~   83 (342)
T d1yfqa_          17 IKIIPSKSLLLITSWDG-----SLTVYKFDIQAK-NVDLLQSLRYKHPLLCCNF-------IDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EEEEGGGTEEEEEETTS-----EEEEEEEETTTT-EEEEEEEEECSSCEEEEEE-------EESSSEEEEEEETTSCEEE
T ss_pred             EEEeCCCCEEEEEECCC-----eEEEEEccCCCc-ceEEEEecCCCCCEEEEEE-------eCCCCCEEEEcccccceee
Confidence            57999999999997765     556666543221 2122222233455667777       454 678999999999999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  159 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  159 (358)
                      |++........                          ....+........+.++ ...+++++.|+.+++||++++....
T Consensus        84 w~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~  136 (342)
T d1yfqa_          84 VDLIGSPSFQA--------------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV  136 (342)
T ss_dssp             ECSSSSSSEEE--------------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC
T ss_pred             eeccccccccc--------------------------ccccccccccccccccc-cccccccccccccceeeccccccce
Confidence            99975433221                          11123333344444555 6689999999999999986543322


Q ss_pred             ee----ccc--ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee---eecCCeeeEEEcCCCCCeEEEEecC
Q 018293          160 TL----EHH--TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAADVESLAWDPHAEHSFVVSLED  230 (358)
Q Consensus       160 ~~----~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~d  230 (358)
                      ..    ..+  ......+.+.+.+ ..+++++.|+.|++||++.........   .......+..+.+.++..+++++.|
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  215 (342)
T d1yfqa_         137 IAVKNLNSNNTKVKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID  215 (342)
T ss_dssp             EEEEESCSSSSSSCCCEEEEEECS-SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT
T ss_pred             eeecccccccccceeeeeeeeccC-CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCC
Confidence            22    211  2234455666666 789999999999999998776544322   2344567777777777899999999


Q ss_pred             CeEEEEEcccCCCCCCCCCCC------ccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCC
Q 018293          231 GTIKGFDIRTAKSDPDSTSQQ------SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK  304 (358)
Q Consensus       231 g~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  304 (358)
                      |.+.+|+..............      .......|...+++++|+|++ .+|++|+.||.|++||+++++  .+..+..+
T Consensus       216 g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~lasg~~Dg~v~vWD~~~~~--~l~~~~~~  292 (342)
T d1yfqa_         216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRK--KIKNFAKF  292 (342)
T ss_dssp             SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE--EEEECCCC
T ss_pred             CeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc-cEEEEECCCCEEEEEECCCCc--EEEEecCC
Confidence            999999987654322111100      011123466789999999998 899999999999999999887  45555432


Q ss_pred             CceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          305 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       305 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                       ..+..++|+|+++ ++++++.|+.+++|...
T Consensus       293 -~~~~~~~~s~~~~-~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         293 -NEDSVVKIACSDN-ILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             -SSSEEEEEEECSS-EEEEEEECTHHHHCSSS
T ss_pred             -CCCEEEEEEeCCC-EEEEEEcCCcEEEeeee
Confidence             3345677888888 47788888888887654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=2.6e-28  Score=210.19  Aligned_cols=286  Identities=11%  Similarity=0.032  Sum_probs=192.5

Q ss_pred             EEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccc
Q 018293           23 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKK  102 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  102 (358)
                      .+.+||...++....+..+.     .+.       .++|||||++|++++.||.|++||+.+++.....           
T Consensus        43 ~v~vwD~~t~~~~~~l~~g~-----~~~-------~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~-----------   99 (426)
T d1hzua2          43 QIALVDGDSKKIVKVIDTGY-----AVH-------ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA-----------   99 (426)
T ss_dssp             EEEEEETTTCSEEEEEECCS-----SEE-------EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE-----------
T ss_pred             EEEEEECCCCcEEEEEeCCC-----Cee-------EEEECCCCCEEEEEeCCCCEEEEEccCCceeEEE-----------
Confidence            78888887763322222221     121       4567999999999999999999999876543211           


Q ss_pred             cccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEE
Q 018293          103 KKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILL  182 (358)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  182 (358)
                                 .+....+|...+.+++|+|+|..+++++..++.+++||..++++...+..+...+....+.+++....+
T Consensus       100 -----------~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (426)
T d1hzua2         100 -----------EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAI  168 (426)
T ss_dssp             -----------EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEE
T ss_pred             -----------EEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEE
Confidence                       112234578888999999996655677778999999999999888877766555544444444433333


Q ss_pred             EEeCCC-----------cEEEEEcccCCCcc-ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCC-----
Q 018293          183 SGSFDR-----------SVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP-----  245 (358)
Q Consensus       183 ~~~~dg-----------~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~-----  245 (358)
                      +.+.|+           .+.+++........ ........+..+.|+|++..++++...+..+.+++..+.+...     
T Consensus       169 ~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  248 (426)
T d1hzua2         169 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG  248 (426)
T ss_dssp             EECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECS
T ss_pred             EECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccC
Confidence            444444           44444444333222 2334566788999999776555556666777777776543200     


Q ss_pred             ----------------------------------------CCCCCCccEEEeecCCceeEEEecCCCCcEEEE-------
Q 018293          246 ----------------------------------------DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-------  278 (358)
Q Consensus       246 ----------------------------------------~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~-------  278 (358)
                                                              .....+....+.+|...+..++|+|++ .+|++       
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg-~~l~v~~~~~~s  327 (426)
T d1hzua2         249 KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPD  327 (426)
T ss_dssp             SCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTC-SEEEECCTTCSS
T ss_pred             CcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCC-ceEEEeecCCCC
Confidence                                                    001124455677888889999999999 77774       


Q ss_pred             EeCCCcEEEEecCCCCceeeE-------ecCCCCceeEEEEEcCCCCeEEEEE----ccCCeEEEEEccCCCcccc
Q 018293          279 GSTDKMVKLWDLSNNQPSCIA-------SRNPKAGAVFSVAFSEDSPFVLAIG----GSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       279 ~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~----~~dg~i~vw~~~~~~~~~~  343 (358)
                      ++.|++|+|||+.+++.....       ....+...+.+++|+|||+++++++    +.+|.|+|||..+.+....
T Consensus       328 ~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~  403 (426)
T d1hzua2         328 ARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV  403 (426)
T ss_dssp             HHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEE
T ss_pred             cccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEE
Confidence            456789999999988743221       1234566799999999999876664    4688999999999886544

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.1e-27  Score=192.57  Aligned_cols=217  Identities=16%  Similarity=0.207  Sum_probs=163.3

Q ss_pred             EEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeE
Q 018293           68 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  147 (358)
Q Consensus        68 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v  147 (358)
                      |++|+.||+|++||+.+..                                .+|...|.+++++++ . .+++++.|+++
T Consensus        24 l~sgs~Dg~v~~Wd~~~~~--------------------------------~~h~~~V~~~~~~~~-~-~~~s~s~D~~v   69 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSSMH--------------------------------QDHSNLIVSLDNSKA-Q-EYSSISWDDTL   69 (287)
T ss_dssp             TEEEETTSCEEETTTTEEE--------------------------------CCCCSCEEEEECCST-T-CCEEEETTTEE
T ss_pred             EEEEeCCCeEEEEECCCCC--------------------------------CCCCCCEEEEEecCC-C-eEEEEeecccc
Confidence            9999999999999986421                                369999999999976 4 68899999999


Q ss_pred             EEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEE
Q 018293          148 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS  227 (358)
Q Consensus       148 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  227 (358)
                      ++|++...+       ....+..+.+++++ ..++ .+.++.+.+|+..+++... .......+  .++++++. .++++
T Consensus        70 ~~w~~~~~~-------~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~-~~~v~  136 (287)
T d1pgua2          70 KVNGITKHE-------FGSQPKVASANNDG-FTAV-LTNDDDLLILQSFTGDIIK-SVRLNSPG--SAVSLSQN-YVAVG  136 (287)
T ss_dssp             EETTEEEEE-------CSSCEEEEEECSSS-EEEE-EETTSEEEEEETTTCCEEE-EEECSSCE--EEEEECSS-EEEEE
T ss_pred             ccccccccc-------cccceeeeeeccCC-ceEE-Eeecccceeeeccceeeee-ecccccee--eeeeccCc-ceeee
Confidence            999975432       23456788888887 5444 5567778899988776544 22333344  44556444 66666


Q ss_pred             ecC-CeEEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCC
Q 018293          228 LED-GTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA  305 (358)
Q Consensus       228 ~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  305 (358)
                      +.+ +.+++|++...         .....+ ..|...+++++|+|++ .+|++|+.||.|++||+.+++. ....+..|.
T Consensus       137 ~~~~~~v~~~~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~h~  205 (287)
T d1pgua2         137 LEEGNTIQVFKLSDL---------EVSFDLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREV-KTSRWAFRT  205 (287)
T ss_dssp             ETTTSCEEEEETTEE---------EEEEECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE-EECCSCCCS
T ss_pred             ccccceeeeeecccc---------ceeeeeeeccCCceeEEEeccCc-cccccccccccccceeeccccc-ccccccccc
Confidence            665 57999998765         333333 3467889999999998 8999999999999999988763 233467899


Q ss_pred             ceeEEEEEcCCC----------CeEEEEEccCCeEEEEEccCCCcccc
Q 018293          306 GAVFSVAFSEDS----------PFVLAIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       306 ~~v~~~~~~~~~----------~~~l~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      .+|.+++|+|.+          . ++++|+.|+.|++||+.++....+
T Consensus       206 ~~v~~~~~~p~~~~~~~~~~~~~-~l~sgs~D~~i~iw~~~~~~~~~~  252 (287)
T d1pgua2         206 SKINAISWKPAEKGANEEEIEED-LVATGSLDTNIFIYSVKRPMKIIK  252 (287)
T ss_dssp             SCEEEEEECCCC------CCSCC-EEEEEETTSCEEEEESSCTTCCEE
T ss_pred             cccceeeecccccccccccCCCC-eeEeecCCCeEEEEECCCCCeEEE
Confidence            999999998754          4 589999999999999987554433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=8.8e-25  Score=178.88  Aligned_cols=267  Identities=13%  Similarity=0.133  Sum_probs=192.5

Q ss_pred             EEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceE-EecCCCCeEEEEEcccccCcCceeecCCccccc
Q 018293           23 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEK  101 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  101 (358)
                      .|.+||...+   .+.  ........|..       ++|+|||++| ++++.++.|++||+.+++....           
T Consensus        13 ~v~v~D~~t~---~~~--~~i~~g~~p~~-------va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-----------   69 (301)
T d1l0qa2          13 NISVIDVTSN---KVT--ATIPVGSNPMG-------AVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-----------   69 (301)
T ss_dssp             EEEEEETTTT---EEE--EEEECSSSEEE-------EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-----------
T ss_pred             EEEEEECCCC---eEE--EEEECCCCceE-------EEEeCCCCEEEEEECCCCEEEEEECCCCceeee-----------
Confidence            6788888765   222  22223333333       4559999987 5677889999999986554332           


Q ss_pred             ccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEE
Q 018293          102 KKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQIL  181 (358)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  181 (358)
                                      +..| ..+..+.|++++..+++++..++.+.+|+..+++....+..+ ....++.|+|++..++
T Consensus        70 ----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~  131 (301)
T d1l0qa2          70 ----------------VPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY  131 (301)
T ss_dssp             ----------------EECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred             ----------------eecc-ccccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeee
Confidence                            2223 346889999997667777788899999999999888888744 5678899999996666


Q ss_pred             EEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCC
Q 018293          182 LSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK  261 (358)
Q Consensus       182 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  261 (358)
                      +++..++.+.+|+..+..... .......+..++++|++..++++...++.+.+|+....         ...... ....
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~  200 (301)
T d1l0qa2         132 VTNNGDKTVSVINTVTKAVIN-TVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---------SVIDTV-KVEA  200 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEE-EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---------EEEEEE-ECSS
T ss_pred             eeeccccceeeeeccccceee-ecccCCCceEEEeeccccceeeecccccccccccccce---------eeeecc-cccC
Confidence            777788999999998876655 34455668899999976645555555677778877654         333333 3445


Q ss_pred             ceeEEEecCCCCcEEEEEe--CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          262 AVCTISYNPLVPNLLATGS--TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       262 ~i~~i~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      .+..+++++++..+++++.  .++.|++||..+++.  ...+..+ ..+.+++|+|||++++++++.|+.|++||+.+++
T Consensus       201 ~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~--~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI--TARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE--EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CcceeeccccccccccccccceeeeeeeeecCCCeE--EEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            6788999999844433332  346799999999873  3333333 4578999999999877888999999999999998


Q ss_pred             ccccc
Q 018293          340 GISNR  344 (358)
Q Consensus       340 ~~~~~  344 (358)
                      .+.+.
T Consensus       278 ~~~~~  282 (301)
T d1l0qa2         278 ITATM  282 (301)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87664

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=7.5e-26  Score=194.45  Aligned_cols=286  Identities=10%  Similarity=-0.050  Sum_probs=186.4

Q ss_pred             EEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccc
Q 018293           23 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKK  102 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  102 (358)
                      ++.+||...++....+..+.     .+       ..++|||||+++++++.||.|++||+.+.+....            
T Consensus        43 ~v~v~D~~t~~v~~~~~~g~-----~~-------~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~------------   98 (432)
T d1qksa2          43 QIALIDGSTYEIKTVLDTGY-----AV-------HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV------------   98 (432)
T ss_dssp             EEEEEETTTCCEEEEEECSS-----CE-------EEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE------------
T ss_pred             EEEEEECCCCcEEEEEeCCC-----Ce-------eEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE------------
Confidence            78889988763322222221     12       2456799999999999999999999986543221            


Q ss_pred             cccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeeccc-----------ccceeeE
Q 018293          103 KKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH-----------TDKVQAV  171 (358)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----------~~~v~~~  171 (358)
                                ..+....+|.+.+.+..|+|||..++++++.+++|++||.++++++..+..+           ......+
T Consensus        99 ----------~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v  168 (432)
T d1qksa2          99 ----------AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI  168 (432)
T ss_dssp             ----------EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred             ----------EEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEE
Confidence                      1112233577788889999996556688999999999999999888776543           3445678


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEEcccCCCccc-eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC----
Q 018293          172 AWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD----  246 (358)
Q Consensus       172 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~----  246 (358)
                      .++|++..++++...++.+.+||..+.+.... .......+..++|+|++..+++++..++.+.++|..+.+....    
T Consensus       169 ~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g  248 (432)
T d1qksa2         169 LASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG  248 (432)
T ss_dssp             EECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             EECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccC
Confidence            89999866667778889999999887664432 2345567889999997765566666677899998876532100    


Q ss_pred             -----CC------------------CCC-ccEEE-------eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc
Q 018293          247 -----ST------------------SQQ-SSFTL-------HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       247 -----~~------------------~~~-~~~~~-------~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                           ..                  ... .+...       ..|...+....++|++ ..+++++.++..++|+..+..+
T Consensus       249 ~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~s~p~~~~lw~~~~~~~  327 (432)
T d1qksa2         249 GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-GSLFIKTHPNSQYLYVDATLNP  327 (432)
T ss_dssp             SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCSEEEEECTTCS
T ss_pred             ccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCC-CeEEEEecCCccceeecccCCC
Confidence                 00                  000 00000       0111234555566655 4555555555555554332110


Q ss_pred             ------------------------eee------EecCCCCceeEEEEEcCCCCeEEEEEc----cCCeEEEEEccCCCcc
Q 018293          296 ------------------------SCI------ASRNPKAGAVFSVAFSEDSPFVLAIGG----SKGKLEIWDTLSDAGI  341 (358)
Q Consensus       296 ------------------------~~~------~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~vw~~~~~~~~  341 (358)
                                              ..+      ..+..|...+.+++|+|||++++++..    .+|.|.|||..+.++.
T Consensus       328 ~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~  407 (432)
T d1qksa2         328 EAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK  407 (432)
T ss_dssp             SHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred             CCCeeeEEEEEechhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEE
Confidence                                    000      012245667999999999998766642    5789999999998875


Q ss_pred             cc
Q 018293          342 SN  343 (358)
Q Consensus       342 ~~  343 (358)
                      ..
T Consensus       408 ~~  409 (432)
T d1qksa2         408 HV  409 (432)
T ss_dssp             EE
T ss_pred             eE
Confidence            43

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1.7e-25  Score=187.86  Aligned_cols=190  Identities=11%  Similarity=0.060  Sum_probs=152.0

Q ss_pred             CccccC-CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCc
Q 018293           58 PLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  136 (358)
Q Consensus        58 ~~~~s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  136 (358)
                      +..||| ||+++|+++ +|.|++||+.++...+                             .+|...|.+++|+|+ ++
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-----------------------------~~~~~~v~~~~~spD-g~   55 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-----------------------------VPEPLRIRYVRRGGD-TK   55 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-----------------------------CSCCSCEEEEEECSS-SE
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-----------------------------ccCCCCEEEEEECCC-CC
Confidence            345799 999999987 5799999997533221                             158899999999999 55


Q ss_pred             EEEEEEcCC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeE
Q 018293          137 ILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  214 (358)
Q Consensus       137 ~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  214 (358)
                      +|++++.+.  .|++||.++++.. .+..|...+.+++|+|++ +++++++.++.+++|++.+.+.......+...+.++
T Consensus        56 ~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (360)
T d1k32a3          56 VAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF  133 (360)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred             EEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccc-cccceeccccccccccccccceeeeeecccccccch
Confidence            666655443  7999999887654 566799999999999999 899999999999999999888777666778889999


Q ss_pred             EEcCCCCCeEEEEe----------cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc
Q 018293          215 AWDPHAEHSFVVSL----------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  284 (358)
Q Consensus       215 ~~~~~~~~~~~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  284 (358)
                      +|+|++. +++.+.          .++.+++||+.+.          ....+..+...+..++|+|+| +.|++++.++.
T Consensus       134 ~~spdg~-~la~~~~~~~~~~~~~~~~~~~v~d~~~~----------~~~~~~~~~~~~~~~~~spdg-~~l~~~s~~~~  201 (360)
T d1k32a3         134 TISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEGR----------KIFAATTENSHDYAPAFDADS-KNLYYLSYRSL  201 (360)
T ss_dssp             EECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETTTT----------EEEECSCSSSBEEEEEECTTS-CEEEEEESCCC
T ss_pred             hhcccee-eeeeeccccccceeeccccceeeeccccC----------ceeeecccccccccccccCCC-CEEEEEeCCCc
Confidence            9999765 555432          3456899999865          334455667788999999998 89999999999


Q ss_pred             EEEEecCC
Q 018293          285 VKLWDLSN  292 (358)
Q Consensus       285 i~i~d~~~  292 (358)
                      +.+||...
T Consensus       202 ~~~~d~~~  209 (360)
T d1k32a3         202 DPSPDRVV  209 (360)
T ss_dssp             CCEECSSS
T ss_pred             eEcccccc
Confidence            99998654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=3.2e-23  Score=178.16  Aligned_cols=243  Identities=9%  Similarity=0.018  Sum_probs=166.8

Q ss_pred             CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC
Q 018293           65 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  144 (358)
Q Consensus        65 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  144 (358)
                      +-++++.+.||.|+|||+.+++.+.                           .+..| ..+..++|+|| ++++++++.|
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~---------------------------~l~~g-~~~~~vafSPD-Gk~l~~~~~d   82 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVK---------------------------VIDTG-YAVHISRMSAS-GRYLLVIGRD   82 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEE---------------------------EEECC-SSEEEEEECTT-SCEEEEEETT
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEE---------------------------EEeCC-CCeeEEEECCC-CCEEEEEeCC
Confidence            3456888899999999998765544                           23334 45899999999 6689999999


Q ss_pred             CeEEEEECCCCceeee--e---cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCC---------
Q 018293          145 KQVKIWDVAAGKCNLT--L---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD---------  210 (358)
Q Consensus       145 g~v~iwd~~~~~~~~~--~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---------  210 (358)
                      ++|++||+.+++....  +   .+|...+.+++|+|||..+++++..++.+.+||..+.........+...         
T Consensus        83 ~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  162 (426)
T d1hzua2          83 ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE  162 (426)
T ss_dssp             SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred             CCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCC
Confidence            9999999998875332  2   3566677788899999445566678999999999987765544433333         


Q ss_pred             --eeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEE
Q 018293          211 --VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  288 (358)
Q Consensus       211 --i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~  288 (358)
                        ...+..++++...+++....+.+.+++.....        ........+...+..+.++|++..++++...+..+.++
T Consensus       163 ~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~  234 (426)
T d1hzua2         163 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID--------NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVI  234 (426)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS--------SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEE
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEecccc--------ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeee
Confidence              34455555444333344444555555555441        23334456777889999999984444444455667777


Q ss_pred             ecCCCCc----------------------------------------------------eeeEecCCCCceeEEEEEcCC
Q 018293          289 DLSNNQP----------------------------------------------------SCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       289 d~~~~~~----------------------------------------------------~~~~~~~~~~~~v~~~~~~~~  316 (358)
                      +..+++.                                                    .....+.+|...+..++|+|+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPd  314 (426)
T d1hzua2         235 DSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK  314 (426)
T ss_dssp             ETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTT
T ss_pred             ecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCC
Confidence            7654321                                                    122334566777899999999


Q ss_pred             CCeEEE------EEccCCeEEEEEccCCCccccc
Q 018293          317 SPFVLA------IGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       317 ~~~~l~------~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      ++++++      +++.|++|+|||+.+++...+.
T Consensus       315 g~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~  348 (426)
T d1hzua2         315 SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV  348 (426)
T ss_dssp             CSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred             CceEEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence            996333      3566889999999998877654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=8.2e-23  Score=169.64  Aligned_cols=244  Identities=14%  Similarity=0.126  Sum_probs=171.9

Q ss_pred             ceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCC
Q 018293           66 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK  145 (358)
Q Consensus        66 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg  145 (358)
                      +||++++.|+.|+|||+.+.+.......                         ..+...+.+++|+|+|..++++++.++
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~-------------------------~~~~~~~~~i~~spDg~~l~v~~~~~~   56 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITI-------------------------ADAGPTPMVPMVAPGGRIAYATVNKSE   56 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC-------------------------TTCTTCCCCEEECTTSSEEEEEETTTT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEEC-------------------------CCCCCCccEEEECCCCCEEEEEECCCC
Confidence            5899999999999999987654443221                         234456789999999554456778899


Q ss_pred             eEEEEECCCCceeeeecccc-----cceeeEEEcCCCCcEEEEEe------------CCCcEEEEEcccCCCccceeeec
Q 018293          146 QVKIWDVAAGKCNLTLEHHT-----DKVQAVAWNHHSPQILLSGS------------FDRSVVMKDARISTHSGFKWAVA  208 (358)
Q Consensus       146 ~v~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~  208 (358)
                      .|.+||+.+++.+..+..+.     ..+..++|+|++ ..++++.            .+..+.+||..+.+... .....
T Consensus        57 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~  134 (337)
T d1pbyb_          57 SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK-AFEAP  134 (337)
T ss_dssp             EEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE-EEECC
T ss_pred             eEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCC-cEEEEeecCCcceeeeccccccceeeccccCCeEEE-ecccc
Confidence            99999999999888776543     345689999999 6666665            35678889988776554 33455


Q ss_pred             CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCC---------------------C-C------------------
Q 018293          209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD---------------------S-T------------------  248 (358)
Q Consensus       209 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~---------------------~-~------------------  248 (358)
                      ..+..++|+|++. ++++++.  .+.+||..+.+....                     . .                  
T Consensus       135 ~~~~~~~~s~dg~-~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (337)
T d1pbyb_         135 RQITMLAWARDGS-KLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDP  211 (337)
T ss_dssp             SSCCCEEECTTSS-CEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCT
T ss_pred             CCceEEEEcCCCC-EEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccce
Confidence            6788999999665 5666653  467788765421000                     0 0                  


Q ss_pred             ----------------C-CCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEE
Q 018293          249 ----------------S-QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  311 (358)
Q Consensus       249 ----------------~-~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~  311 (358)
                                      . ......+..+...+..+.++|++ .+++.+  ++.|++||+.+++...  .. .+...+.++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~v~d~~~~~~~~--~~-~~~~~~~~~  285 (337)
T d1pbyb_         212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNASIK--RV-PLPHSYYSV  285 (337)
T ss_dssp             TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTEEEE--EE-ECSSCCCEE
T ss_pred             eeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccc-eEEEEc--cccEEEEECCCCcEEE--EE-cCCCCEEEE
Confidence                            0 00011223344556677788877 666554  5789999999987433  33 244568899


Q ss_pred             EEcCCCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293          312 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       312 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                      +|+|||++ |++++.||.|++||..+++.+.+.-.
T Consensus       286 ~~s~dG~~-l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         286 NVSTDGST-VWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EECTTSCE-EEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EECCCCCE-EEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            99999995 77789999999999999998876533

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=1.2e-22  Score=169.36  Aligned_cols=291  Identities=11%  Similarity=0.050  Sum_probs=189.5

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceE-EecCCCCeEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEI   79 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~v   79 (358)
                      ++|+|++.+|+++..++     .|.+||...+   .+...........|.++       +|+|||+++ +++..++.|++
T Consensus         2 ~a~~~~~~~l~~~~~~~-----~v~v~D~~t~---~~~~t~~~~~~~~p~~l-------~~spDG~~l~v~~~~~~~v~~   66 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPN-----NLHVVDVASD---TVYKSCVMPDKFGPGTA-------MMAPDNRTAYVLNNHYGDIYG   66 (346)
T ss_dssp             CCCCTTCEEEEEEETTT-----EEEEEETTTT---EEEEEEECSSCCSSCEE-------EECTTSSEEEEEETTTTEEEE
T ss_pred             ccCCCCCcEEEEEcCCC-----EEEEEECCCC---CEEEEEEcCCCCCcceE-------EECCCCCEEEEEECCCCcEEE
Confidence            57999999999998887     9999999876   33221111112233344       449999987 56678899999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE------------cCCeE
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS------------ADKQV  147 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------------~dg~v  147 (358)
                      ||+.+++.........                     ....+...+..++|+|+| +++++++            .++.+
T Consensus        67 ~d~~t~~~~~~~~~~~---------------------~~~~~~~~~~~v~~s~DG-~~l~v~~~~~~~~~~~~~~~~~~i  124 (346)
T d1jmxb_          67 IDLDTCKNTFHANLSS---------------------VPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRL  124 (346)
T ss_dssp             EETTTTEEEEEEESCC---------------------STTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEE
T ss_pred             EeCccCeeeeeecccc---------------------cccccCCceEEEEEecCC-CEEEEEecCCcceeeeeccCcceE
Confidence            9998765543222111                     111233456688999995 4565553            46789


Q ss_pred             EEEECCCCceeeeeccc--ccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCC---
Q 018293          148 KIWDVAAGKCNLTLEHH--TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH---  222 (358)
Q Consensus       148 ~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~---  222 (358)
                      .+|+..+++....+..+  ...+..+.+++++ .++++   ++.+.+|++.+.+.... .........+.++|++..   
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  199 (346)
T d1jmxb_         125 EVFSTADGLEAKPVRTFPMPRQVYLMRAADDG-SLYVA---GPDIYKMDVKTGKYTVA-LPLRNWNRKGYSAPDVLYFWP  199 (346)
T ss_dssp             EEEEGGGGGGBCCSEEEECCSSCCCEEECTTS-CEEEE---SSSEEEECTTTCCEEEE-ECSTTCCCTTBCCCBCCCCCC
T ss_pred             EEEecccceeeeEEEeeeccCceEEEEecCCC-EEEEe---CCcceEEEccCCCEEEE-EecCCCccceEEeccccEEEE
Confidence            99999888766555432  3456667777776 54443   35688899876654332 222222333334443222   


Q ss_pred             ----------------------eEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe
Q 018293          223 ----------------------SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       223 ----------------------~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~  280 (358)
                                            .++++..++.+.+||..+..        ........+...+..+.+++++ .+++...
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  270 (346)
T d1jmxb_         200 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK--------THTQEFADLTELYFTGLRSPKD-PNQIYGV  270 (346)
T ss_dssp             CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC--------EEEEEEEECSSCEEEEEECSSC-TTEEEEE
T ss_pred             EecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc--------eEEEEeecccceeEEEEEeCCC-CEEEEec
Confidence                                  22333445567777777651        3334456678888999999988 4455544


Q ss_pred             CCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293          281 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       281 ~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                       ++.|.+||..+++...  ... +...+.+++|+|||++ +++++.||.|++||..+++.+.+.-..
T Consensus       271 -~~~v~v~d~~~~~~~~--~~~-~~~~~~~va~s~DG~~-l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         271 -LNRLAKYDLKQRKLIK--AAN-LDHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             -ESEEEEEETTTTEEEE--EEE-CSSCCCEEEECSSSSC-EEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             -CCeEEEEECCCCcEEE--EEc-CCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECccCCEEEEEECC
Confidence             4679999999987433  332 3346889999999996 777889999999999999988764433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=1e-20  Score=154.32  Aligned_cols=233  Identities=14%  Similarity=0.115  Sum_probs=173.4

Q ss_pred             EEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeE
Q 018293           68 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  147 (358)
Q Consensus        68 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v  147 (358)
                      +++++.|++|.|||+.+++......                            ....+..++|+|+|..++++++.++.|
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~----------------------------~g~~p~~va~spdG~~l~v~~~~~~~i   56 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIP----------------------------VGSNPMGAVISPDGTKVYVANAHSNDV   56 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEE----------------------------CSSSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEE----------------------------CCCCceEEEEeCCCCEEEEEECCCCEE
Confidence            4567789999999998765443221                            224578999999955455677889999


Q ss_pred             EEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEE
Q 018293          148 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS  227 (358)
Q Consensus       148 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  227 (358)
                      ++||+.+++.+..+..+. .+..+.|++++...++++..++.+.+|+..+++... .........++.|+|++..+++++
T Consensus        57 ~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dg~~~~~~~  134 (301)
T d1l0qa2          57 SIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG-TVKTGKSPLGLALSPDGKKLYVTN  134 (301)
T ss_dssp             EEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEECSSSEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccceeee-eccccccceEEEeecCCCeeeeee
Confidence            999999999999888665 468899999996667777788899999998876555 445566788999999877677778


Q ss_pred             ecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeC-CCcEEEEecCCCCceeeEecCCCCc
Q 018293          228 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSNNQPSCIASRNPKAG  306 (358)
Q Consensus       228 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~  306 (358)
                      ..++.+.+|+..+.         .....+.. ...+..++++|++ ..+++++. ++.+.+|+....+.  ..... ...
T Consensus       135 ~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~  200 (301)
T d1l0qa2         135 NGDKTVSVINTVTK---------AVINTVSV-GRSPKGIAVTPDG-TKVYVANFDSMSISVIDTVTNSV--IDTVK-VEA  200 (301)
T ss_dssp             TTTTEEEEEETTTT---------EEEEEEEC-CSSEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEE--EEEEE-CSS
T ss_pred             ccccceeeeecccc---------ceeeeccc-CCCceEEEeeccc-cceeeecccccccccccccceee--eeccc-ccC
Confidence            88999999999876         44555544 4457889999998 55555554 56677888776653  22222 335


Q ss_pred             eeEEEEEcCCCCeEEEEE--ccCCeEEEEEccCCCccccc
Q 018293          307 AVFSVAFSEDSPFVLAIG--GSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       307 ~v~~~~~~~~~~~~l~~~--~~dg~i~vw~~~~~~~~~~~  344 (358)
                      .+..++|++++..+++++  ..++.|++||+.+++.+.+.
T Consensus       201 ~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~  240 (301)
T d1l0qa2         201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI  240 (301)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             CcceeeccccccccccccccceeeeeeeeecCCCeEEEEE
Confidence            577899999999755543  33478999999998876543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=9.5e-20  Score=150.79  Aligned_cols=274  Identities=10%  Similarity=0.152  Sum_probs=173.4

Q ss_pred             EEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEe-cCCCCeEEEEEcccccCcCceeecCCccccc
Q 018293           23 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV-GSMEPAIEIWDLDVIDEVQPHVILGGIDEEK  101 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  101 (358)
                      .|++|+.....  .+........+..+..++       |||||++|++ +..|+.|++|++..........         
T Consensus        15 ~I~v~~~~~~~--~l~~~~~~~~~~~v~~la-------~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~---------   76 (333)
T d1ri6a_          15 QIHVWNLNHEG--ALTLTQVVDVPGQVQPMV-------VSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA---------   76 (333)
T ss_dssp             EEEEEEECTTS--CEEEEEEEECSSCCCCEE-------ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE---------
T ss_pred             cEEEEEEcCCC--CeEEEEEEcCCCCEeEEE-------EeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe---------
Confidence            56666654322  222223233444444444       4999999854 5568999999997543322111         


Q ss_pred             ccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE-cCCeEEEEECCCCceeee--ecccccceeeEEEcCCCC
Q 018293          102 KKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSP  178 (358)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~  178 (358)
                                     ....+...+..++|+|+ +++|++++ .++.|.+|+.........  ...+...+.++.++|++ 
T Consensus        77 ---------------~~~~~~~~p~~l~~spD-g~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~-  139 (333)
T d1ri6a_          77 ---------------AESALPGSLTHISTDHQ-GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN-  139 (333)
T ss_dssp             ---------------EEEECSSCCSEEEECTT-SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS-
T ss_pred             ---------------eecccCCCceEEEEcCC-CCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecc-
Confidence                           01123455778999999 55666666 477899999876654333  33466678899999999 


Q ss_pred             cEEEEEe-CCCcEEEEEcccCCCcccee------eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCC
Q 018293          179 QILLSGS-FDRSVVMKDARISTHSGFKW------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ  251 (358)
Q Consensus       179 ~~l~~~~-~dg~i~i~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~  251 (358)
                      +.+++++ .+..+.+|+...........      ........++|++++...+.+....+...+|+........     .
T Consensus       140 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~  214 (333)
T d1ri6a_         140 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI-----E  214 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC-----E
T ss_pred             eeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccce-----e
Confidence            5555554 56679999987655432111      1234567899999766555566677788888876542210     1


Q ss_pred             ccEEEe------ecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce-eeEecCCCCceeEEEEEcCCCCeEEEEE
Q 018293          252 SSFTLH------AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS-CIASRNPKAGAVFSVAFSEDSPFVLAIG  324 (358)
Q Consensus       252 ~~~~~~------~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~  324 (358)
                      ......      ........+++++++..+++++..++.+.+|++...... ...........+..++|+|||+++++++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~  294 (333)
T d1ri6a_         215 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG  294 (333)
T ss_dssp             EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred             eeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEE
Confidence            111111      123456778999999556666677889999998765422 2222223345577899999999877777


Q ss_pred             ccCCeEEEEEcc
Q 018293          325 GSKGKLEIWDTL  336 (358)
Q Consensus       325 ~~dg~i~vw~~~  336 (358)
                      ..++.|.+|++.
T Consensus       295 ~~~~~v~v~~id  306 (333)
T d1ri6a_         295 QKSHHISVYEIV  306 (333)
T ss_dssp             TTTCEEEEEEEE
T ss_pred             CCCCeEEEEEEE
Confidence            778999999654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.87  E-value=4.2e-19  Score=149.38  Aligned_cols=305  Identities=10%  Similarity=0.007  Sum_probs=188.2

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC--------
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS--------   72 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~--------   72 (358)
                      ++++|+++.+++..........++|++|...+   .+....  .....+        .+.|+|||++|++++        
T Consensus        26 ~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg---~~~~~~--~~~~~~--------~~a~SpDG~~l~va~~~~~~~~~   92 (373)
T d2madh_          26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGSG---SILGHV--NGGFLP--------NPVAAHSGSEFALASTSFSRIAK   92 (373)
T ss_pred             cccCCCCCEEEEEcccccCCCceEEEEECCCC---CEEEEE--eCCCCc--------cEEEcCCCCEEEEEeecCCcccc
Confidence            36899999998874433234558999998776   222211  111111        234599999998874        


Q ss_pred             --CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE-EEcCCeEEE
Q 018293           73 --MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS-ASADKQVKI  149 (358)
Q Consensus        73 --~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-~~~dg~v~i  149 (358)
                        .++.|.+||..+++...........                 ...   -......+.|++++...++. ...++.+.+
T Consensus        93 ~~~~~~v~v~D~~t~~~~~~~~~~~~~-----------------~~~---~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~  152 (373)
T d2madh_          93 GKRTDYVEVFDPVTFLPIADIELPDAP-----------------RFD---VGPYSWMNANTPNNADLLFFQFAAGPAVGL  152 (373)
T ss_pred             cccceEEEEEECCCCcEEEEEecCCcc-----------------eeE---eccCCCcEEEEeCCCcEEEEEEcCCCceEE
Confidence              4678999999877654432211000                 000   00112457788885433322 244578899


Q ss_pred             EECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeec------CCeeeEEEcCCCCCe
Q 018293          150 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA------ADVESLAWDPHAEHS  223 (358)
Q Consensus       150 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~  223 (358)
                      |+....+.....    ....++.++|++...+++.+.|+.+.+|+..............      .......+.+  ...
T Consensus       153 ~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  226 (373)
T d2madh_         153 VVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK--SGR  226 (373)
T ss_pred             eeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC--Cce
Confidence            998877655443    3456789999997778899999999999988776544322211      1123344444  335


Q ss_pred             EEEEecCCeEEEEEcccCCCCCCCC---CCCccEEEeecCCceeEEEecCCCC---------cEEEEEeCCCcEEEEecC
Q 018293          224 FVVSLEDGTIKGFDIRTAKSDPDST---SQQSSFTLHAHDKAVCTISYNPLVP---------NLLATGSTDKMVKLWDLS  291 (358)
Q Consensus       224 ~~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~i~~i~~~~~~~---------~~l~~~~~dg~i~i~d~~  291 (358)
                      ++..+.++.+.+|+...........   .................++++|++.         ..+++...++.+.+||..
T Consensus       227 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  306 (373)
T d2madh_         227 IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL  306 (373)
T ss_pred             EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECC
Confidence            6677788999999987653210000   0000001111112233445555542         334556667889999999


Q ss_pred             CCCceeeEecCCCCceeEEEEEcCCCCeE-EEEEccCCeEEEEEccCCCcccccccc
Q 018293          292 NNQPSCIASRNPKAGAVFSVAFSEDSPFV-LAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       292 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                      +++.  +..+ .+...+..++|+|||+++ +++++.|+.|++||+.+++.+.+.-..
T Consensus       307 t~~~--~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~  360 (373)
T d2madh_         307 VGQT--SSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             CCcE--EEEe-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence            9884  3333 345678899999999864 578899999999999999988766543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=5.9e-20  Score=157.39  Aligned_cols=234  Identities=11%  Similarity=0.020  Sum_probs=159.9

Q ss_pred             CCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc
Q 018293           64 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  143 (358)
Q Consensus        64 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  143 (358)
                      +.-++++.+.||+|.|||..+++.+..                           +..| ..+..++|+|| ++++++++.
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~---------------------------~~~g-~~~~~v~fSpD-G~~l~~~s~   81 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTV---------------------------LDTG-YAVHISRLSAS-GRYLFVIGR   81 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEE---------------------------EECS-SCEEEEEECTT-SCEEEEEET
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEE---------------------------EeCC-CCeeEEEECCC-CCEEEEEcC
Confidence            334568999999999999987665543                           2234 36999999999 678999999


Q ss_pred             CCeEEEEECCCCcee--eee---cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee-----------ee
Q 018293          144 DKQVKIWDVAAGKCN--LTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-----------AV  207 (358)
Q Consensus       144 dg~v~iwd~~~~~~~--~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------~~  207 (358)
                      |++|++||+.+++..  ..+   ..|.+.+.+..|+|||..++++++.++.+++||..+++......           ..
T Consensus        82 dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~  161 (432)
T d1qksa2          82 DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP  161 (432)
T ss_dssp             TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEES
T ss_pred             CCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccC
Confidence            999999999887632  232   35666677778899994456788899999999999877554322           23


Q ss_pred             cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEE-EeecCCceeEEEecCCCCcEEEEEe-CCCcE
Q 018293          208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTISYNPLVPNLLATGS-TDKMV  285 (358)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i  285 (358)
                      ......+.++|++..++++...++.|.+||..+.         +.... ...+...+..++|+|+| +++++++ .++.+
T Consensus       162 ~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~---------~~~~~~~i~~g~~~~~~~~spdg-~~~~va~~~~~~v  231 (432)
T d1qksa2         162 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDL---------NNLKTTEISAERFLHDGGLDGSH-RYFITAANARNKL  231 (432)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS---------SEEEEEEEECCSSEEEEEECTTS-CEEEEEEGGGTEE
T ss_pred             CCceeEEEECCCCCEEEEEEccCCeEEEEEccCC---------CcceEEEEcccCccccceECCCC-CEEEEeccccceE
Confidence            4456678899987767777888999999998875         22222 22345668899999999 5555554 56679


Q ss_pred             EEEecCCCCceeeEecC---CCCceeEEEEEcCCCCeEEEEE-ccCCeEEEEEccC
Q 018293          286 KLWDLSNNQPSCIASRN---PKAGAVFSVAFSEDSPFVLAIG-GSKGKLEIWDTLS  337 (358)
Q Consensus       286 ~i~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~vw~~~~  337 (358)
                      .++|..+.+........   .|........+...+.. .++. ..++.|.+|+...
T Consensus       232 ~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~-~~~~~lg~~~v~~~~~~~  286 (432)
T d1qksa2         232 VVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPV-WATSHMGDDSVALIGTDP  286 (432)
T ss_dssp             EEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEE-EEEEBSSSSEEEEEECCT
T ss_pred             EEeecccceEEEEeccCccccccCcccceecCCCCce-ecccccCCceEEeccccc
Confidence            99999877643222211   12233333444444442 3332 2356666666544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=1.3e-19  Score=151.46  Aligned_cols=295  Identities=10%  Similarity=0.048  Sum_probs=179.9

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEec----------
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG----------   71 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g----------   71 (358)
                      +.+|+++.+++.........-++|+||...+   .+...-  .....+ .       ++|||||++|++.          
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg---~~~~~~--~~g~~~-~-------~a~SpDg~~l~v~~~~~~~~~~g   74 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAG---RVIGMI--DGGFLP-N-------PVVADDGSFIAHASTVFSRIARG   74 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTT---EEEEEE--EECSSC-E-------EEECTTSSCEEEEEEEEEETTEE
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCC---cEEEEE--ECCCCC-c-------eEEcCCCCEEEEEeCCCcccccc
Confidence            4689999998874433223458999998876   322211  111111 2       3459999988864          


Q ss_pred             CCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE--cCCeEEE
Q 018293           72 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS--ADKQVKI  149 (358)
Q Consensus        72 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~dg~v~i  149 (358)
                      ..|+.|++||..+++..........                    ...........++|+|++ ..++.+.  .+..+.+
T Consensus        75 ~~d~~v~v~D~~t~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~s~dg-~~~~v~~~~~~~~~~~  133 (355)
T d2bbkh_          75 ERTDYVEVFDPVTLLPTADIELPDA--------------------PRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGV  133 (355)
T ss_dssp             EEEEEEEEECTTTCCEEEEEEETTC--------------------CCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEecCCc--------------------ceeecCCCCceEEEecCC-CeeEEecCCCCceeee
Confidence            3478999999987665543322110                    001122334567899995 4555553  4678999


Q ss_pred             EECCCCceeeeeccccc-------ceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCC
Q 018293          150 WDVAAGKCNLTLEHHTD-------KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  222 (358)
Q Consensus       150 wd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  222 (358)
                      |+..+++.+..+..+..       ....+.+++++..+++....++.+.+++.......     ....+....+.++ +.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~  207 (355)
T d2bbkh_         134 VDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE-----DEFLINHPAYSQK-AG  207 (355)
T ss_dssp             EETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT-----TSCBCSCCEEETT-TT
T ss_pred             eecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce-----ecceeeeccccCC-CC
Confidence            99999988877764332       12234455555333333333444444444332221     1223445566664 44


Q ss_pred             eEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeec----------CCceeEEEecCCCCcEEEEEeCC----------
Q 018293          223 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH----------DKAVCTISYNPLVPNLLATGSTD----------  282 (358)
Q Consensus       223 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----------~~~i~~i~~~~~~~~~l~~~~~d----------  282 (358)
                      .++.++.++.+++|++.....       ..+.....+          ......+++++++ ..++....+          
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~  279 (355)
T d2bbkh_         208 RLVWPTYTGKIHQIDLSSGDA-------KFLPAVEALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTAS  279 (355)
T ss_dssp             EEEEEBTTSEEEEEECTTSSC-------EECCCEESSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCE
T ss_pred             eEEEecCCCeEEEEecCCCcE-------EEEeccCCcccceEeeeeeccceEEEEEeCCC-CeEEEEeccCCceeecCCC
Confidence            788888999999999987632       111111111          1223458889988 555544332          


Q ss_pred             CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCe-EEEEEccCCeEEEEEccCCCcccccccc
Q 018293          283 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       283 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                      ..|.+||..+++..  ..+. +...+.+++|+|||+. ++++++.|+.|++||+.+++.+.+.-..
T Consensus       280 ~~v~v~d~~t~~~~--~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~  342 (355)
T d2bbkh_         280 RFVVVLDAKTGERL--AKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  342 (355)
T ss_dssp             EEEEEEETTTCCEE--EEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             CeEEEEeCCCCcEE--EEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCc
Confidence            36999999998743  3332 3356889999999975 4677788999999999999988765433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=1.7e-18  Score=143.24  Aligned_cols=236  Identities=12%  Similarity=0.076  Sum_probs=156.5

Q ss_pred             cEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceE-EecCCCCeEEEEEccccc
Q 018293            8 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLDVID   86 (358)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~vw~~~~~~   86 (358)
                      .+++++..++     +|.+||....   .+.  +....+...    ..+.+++|+|||+++ ++++.++.|.+||+.+++
T Consensus         2 ~~~vt~~~d~-----~v~v~D~~s~---~~~--~~i~~~~~~----~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~   67 (337)
T d1pbyb_           2 DYILAPARPD-----KLVVIDTEKM---AVD--KVITIADAG----PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE   67 (337)
T ss_dssp             EEEEEEETTT-----EEEEEETTTT---EEE--EEEECTTCT----TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC
T ss_pred             eEEEEEcCCC-----EEEEEECCCC---eEE--EEEECCCCC----CCccEEEECCCCCEEEEEECCCCeEEEEECCCCc
Confidence            4678887777     8999999875   211  112221110    012245569999987 567889999999998766


Q ss_pred             CcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE------------cCCeEEEEECCC
Q 018293           87 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS------------ADKQVKIWDVAA  154 (358)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------------~dg~v~iwd~~~  154 (358)
                      ........                      ....+...+..++|+|+ +.+++++.            .++.+.+||..+
T Consensus        68 ~~~~~~~~----------------------~~~~~~~~~~~v~~s~d-g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~  124 (337)
T d1pbyb_          68 TLGRIDLS----------------------TPEERVKSLFGAALSPD-GKTLAIYESPVRLELTHFEVQPTRVALYDAET  124 (337)
T ss_dssp             EEEEEECC----------------------BTTEEEECTTCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEETTT
T ss_pred             EEEEEecC----------------------CCcccccceeeEEEcCC-CcEEEEeecCCcceeeeccccccceeeccccC
Confidence            54432211                      11123345667899999 55666654            357899999999


Q ss_pred             CceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc-------------------------------
Q 018293          155 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-------------------------------  203 (358)
Q Consensus       155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------------------------------  203 (358)
                      ++....+.. ...+..++|+|++ .++++++.  .+.+||..+.+....                               
T Consensus       125 ~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (337)
T d1pbyb_         125 LSRRKAFEA-PRQITMLAWARDG-SKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMAT  200 (337)
T ss_dssp             TEEEEEEEC-CSSCCCEEECTTS-SCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred             CeEEEeccc-cCCceEEEEcCCC-CEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeee
Confidence            998888874 4568899999999 77777764  466777654321100                               


Q ss_pred             -----------------------------------eeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCC
Q 018293          204 -----------------------------------KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST  248 (358)
Q Consensus       204 -----------------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~  248 (358)
                                                         ...+...+..+.++|++ .+++.+  ++.+++||+.+.       
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~v~d~~~~-------  270 (337)
T d1pbyb_         201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKN-------  270 (337)
T ss_dssp             EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTT-------
T ss_pred             eeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccc-eEEEEc--cccEEEEECCCC-------
Confidence                                               00111223445566633 344433  589999999987       


Q ss_pred             CCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceee
Q 018293          249 SQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  298 (358)
Q Consensus       249 ~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  298 (358)
                        +.+..+. +...+.+++|+|+| ++|++++.|+.|++||..+.+....
T Consensus       271 --~~~~~~~-~~~~~~~~~~s~dG-~~l~v~~~~~~i~v~D~~t~~~v~~  316 (337)
T d1pbyb_         271 --ASIKRVP-LPHSYYSVNVSTDG-STVWLGGALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             --EEEEEEE-CSSCCCEEEECTTS-CEEEEESBSSEEEEEETTTCCEEEE
T ss_pred             --cEEEEEc-CCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcEEEE
Confidence              5555553 56678999999999 8899999999999999999885433

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=6.9e-17  Score=133.30  Aligned_cols=250  Identities=11%  Similarity=0.117  Sum_probs=154.8

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCC-CCeEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-EPAIEI   79 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~v   79 (358)
                      |+|+|+|+.|+++...+  +.+.+|.++....   .+...........+..+       +|+|||++|++++. ++.|.+
T Consensus        42 la~spDG~~L~v~~~~d--~~i~~~~i~~~~~---~~~~~~~~~~~~~p~~l-------~~spDg~~l~v~~~~~~~v~~  109 (333)
T d1ri6a_          42 MVVSPDKRYLYVGVRPE--FRVLAYRIAPDDG---ALTFAAESALPGSLTHI-------STDHQGQFVFVGSYNAGNVSV  109 (333)
T ss_dssp             EEECTTSSEEEEEETTT--TEEEEEEECTTTC---CEEEEEEEECSSCCSEE-------EECTTSSEEEEEETTTTEEEE
T ss_pred             EEEeCCCCEEEEEECCC--CeEEEEEEeCCCC---cEEEeeecccCCCceEE-------EEcCCCCEEeecccCCCceee
Confidence            57999999998776544  4444444443332   22222222233333334       45999999988874 678999


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEE-cCCeEEEEECCCCcee
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWDVAAGKCN  158 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~  158 (358)
                      |+........                         ......+...+.++.++|++. +++.++ .+..+.+|+.......
T Consensus       110 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~v~~s~d~~-~~~~~~~~~~~i~~~~~~~~~~~  163 (333)
T d1ri6a_         110 TRLEDGLPVG-------------------------VVDVVEGLDGCHSANISPDNR-TLWVPALKQDRICLFTVSDDGHL  163 (333)
T ss_dssp             EEEETTEEEE-------------------------EEEEECCCTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECTTSCE
T ss_pred             ecccccccee-------------------------cccccCCCccceEEEeeecce-eeeccccccceeeEEEeccCCcc
Confidence            9876432221                         112224666788999999954 555554 5678999998765332


Q ss_pred             eee------cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee----------eecCCeeeEEEcCCCCC
Q 018293          159 LTL------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----------AVAADVESLAWDPHAEH  222 (358)
Q Consensus       159 ~~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~  222 (358)
                      ...      .........++|++++...+.+....+...+++...........          ........+++++++..
T Consensus       164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  243 (333)
T d1ri6a_         164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  243 (333)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCc
Confidence            211      12345567899999984444555567778888875443322111          12234667889998776


Q ss_pred             eEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEE-eCCCcEEEEec--CCCCc
Q 018293          223 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG-STDKMVKLWDL--SNNQP  295 (358)
Q Consensus       223 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~-~~dg~i~i~d~--~~~~~  295 (358)
                      .++++..++.+.+|++.....      .............+.+++|+|+| ++|+++ ..++.|++|++  .+++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~p~~~a~spDG-k~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         244 LYACDRTASLITVFSVSEDGS------VLSKEGFQPTETQPRGFNVDHSG-KYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEEEETTTTEEEEEEECTTSC------CEEEEEEEECSSSCCCEEECTTS-SEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             eeeecccCCeEEEEEEcCCCC------EEEEEEEeCCCCCeeEEEEeCCC-CEEEEEECCCCeEEEEEEECCCCcE
Confidence            777778889999999976521      01122223344567889999999 655554 55788999955  55543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.79  E-value=3.2e-18  Score=142.10  Aligned_cols=242  Identities=11%  Similarity=-0.005  Sum_probs=162.1

Q ss_pred             ccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEE
Q 018293           59 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  138 (358)
Q Consensus        59 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  138 (358)
                      ++|++++++|++++.++.|.+||+.+.+.+....+                          .|...+.+++|+|+|..++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~--------------------------~~~~~p~~l~~spDG~~l~   55 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--------------------------PDKFGPGTAMMAPDNRTAY   55 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--------------------------SSCCSSCEEEECTTSSEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc--------------------------CCCCCcceEEECCCCCEEE
Confidence            46799999999999999999999987654432211                          3556678999999965556


Q ss_pred             EEEEcCCeEEEEECCCCceeeeeccc------ccceeeEEEcCCCCcEEEEEe------------CCCcEEEEEcccCCC
Q 018293          139 ASASADKQVKIWDVAAGKCNLTLEHH------TDKVQAVAWNHHSPQILLSGS------------FDRSVVMKDARISTH  200 (358)
Q Consensus       139 ~s~~~dg~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~  200 (358)
                      +++..++.|.+||+.+++.+..+...      ...+..++|+|+| +++++++            .++.+.+||..+++.
T Consensus        56 v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG-~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  134 (346)
T d1jmxb_          56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE  134 (346)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred             EEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCC-CEEEEEecCCcceeeeeccCcceEEEEeccccee
Confidence            77778999999999999887766432      2346789999999 6666554            467889999887765


Q ss_pred             ccceee--ecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC------
Q 018293          201 SGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV------  272 (358)
Q Consensus       201 ~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~------  272 (358)
                      ......  ....+..+.+.+ ++.+++ .  ++.+.+|++.+.         .....+..+. ....+.++|++      
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~  200 (346)
T d1jmxb_         135 AKPVRTFPMPRQVYLMRAAD-DGSLYV-A--GPDIYKMDVKTG---------KYTVALPLRN-WNRKGYSAPDVLYFWPH  200 (346)
T ss_dssp             BCCSEEEECCSSCCCEEECT-TSCEEE-E--SSSEEEECTTTC---------CEEEEECSTT-CCCTTBCCCBCCCCCCC
T ss_pred             eeEEEeeeccCceEEEEecC-CCEEEE-e--CCcceEEEccCC---------CEEEEEecCC-CccceEEeccccEEEEE
Confidence            443332  234566677766 443443 3  356888998776         3333333221 12223333332      


Q ss_pred             -------------------CcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEE
Q 018293          273 -------------------PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW  333 (358)
Q Consensus       273 -------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw  333 (358)
                                         ...++++..++.+.+||..++... ......+...+..+.+++++.+ ++... ++.|.+|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~  277 (346)
T d1jmxb_         201 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH-TQEFADLTELYFTGLRSPKDPN-QIYGV-LNRLAKY  277 (346)
T ss_dssp             CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECSSCTT-EEEEE-ESEEEEE
T ss_pred             ecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceE-EEEeecccceeEEEEEeCCCCE-EEEec-CCeEEEE
Confidence                               123344455667888888887643 3334456777889999999886 44444 4689999


Q ss_pred             EccCCCccccc
Q 018293          334 DTLSDAGISNR  344 (358)
Q Consensus       334 ~~~~~~~~~~~  344 (358)
                      |..+++.+...
T Consensus       278 d~~~~~~~~~~  288 (346)
T d1jmxb_         278 DLKQRKLIKAA  288 (346)
T ss_dssp             ETTTTEEEEEE
T ss_pred             ECCCCcEEEEE
Confidence            99998876543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=5.4e-17  Score=136.16  Aligned_cols=301  Identities=11%  Similarity=-0.048  Sum_probs=175.2

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEec----------
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG----------   71 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g----------   71 (358)
                      +..|+++...+.-.....+..++|+++...+   .+.....  ....+ .+       +|+|||+.|++.          
T Consensus        26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~---~~~~~~~--~~~~~-~~-------a~spDg~~i~~~~~~~~~~~~g   92 (368)
T d1mdah_          26 GPGAISRRSHITLPAYFAGTTENWVSCAGCG---VTLGHSL--GAFLS-LA-------VAGHSGSDFALASTSFARSAKG   92 (368)
T ss_dssp             CCCCCTTEEEEEECTTTCSSEEEEEEETTTT---EEEEEEE--ECTTC-EE-------EECTTSSCEEEEEEEETTTTSS
T ss_pred             ccCCCCcceeEEeeccCCCcceEEEEeCCCC---cEEEEEe--CCCCC-cc-------eECCCCCEEEEEcccCcccccc
Confidence            4566777654443322225678999998876   3332211  11111 23       448999988864          


Q ss_pred             CCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEE
Q 018293           72 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  151 (358)
Q Consensus        72 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd  151 (358)
                      +.|+.|++||..+.+..........                    ...........++|+|+|..++++...++.+.+||
T Consensus        93 ~~d~~v~v~D~~t~~~~~~i~~p~~--------------------~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d  152 (368)
T d1mdah_          93 KRTDYVEVFDPVTFLPIADIELPDA--------------------PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLS  152 (368)
T ss_dssp             SEEEEEEEECTTTCCEEEEEEETTS--------------------CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEE
T ss_pred             ccCCeEEEEECCCCcEeeeecCCcc--------------------ceecccCCccceEECCCCCEEEEEeCCCCeEEEEE
Confidence            4578899999987665543322110                    00011122346899999654444445689999999


Q ss_pred             CCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce------eeecCCeeeEEEcCCCCCeEE
Q 018293          152 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK------WAVAADVESLAWDPHAEHSFV  225 (358)
Q Consensus       152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~  225 (358)
                      +.+++....+..+....    +.+.+...++..+.||.+.++++.........      ..+...+..+.+.+++  . +
T Consensus       153 ~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~-~  225 (368)
T d1mdah_         153 VPGASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG--M-L  225 (368)
T ss_dssp             ETTTEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT--E-E
T ss_pred             CCCCcEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCc--E-E
Confidence            99999888876544332    23344466777788888888887765443211      1122334456666632  2 2


Q ss_pred             EEecCCeEEEEEcccCCCCCCCCC-CCcc--EEEeecCCceeEEEecCCCCcEEEEEeCC--------CcEEEEecCCCC
Q 018293          226 VSLEDGTIKGFDIRTAKSDPDSTS-QQSS--FTLHAHDKAVCTISYNPLVPNLLATGSTD--------KMVKLWDLSNNQ  294 (358)
Q Consensus       226 ~~~~dg~i~i~d~~~~~~~~~~~~-~~~~--~~~~~~~~~i~~i~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~  294 (358)
                      .....+.+.+++............ ....  ............++++|++..++++...+        ..|.+||..+++
T Consensus       226 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~  305 (368)
T d1mdah_         226 VWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ  305 (368)
T ss_dssp             EECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC
T ss_pred             EEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc
Confidence            223455666666655421000000 0000  00000112234578888884444433222        248899999987


Q ss_pred             ceeeEecCCCCceeEEEEEcCCCCe-EEEEEccCCeEEEEEccCCCcccccc
Q 018293          295 PSCIASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       295 ~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      .  +..+. +...+.+++|+|||+. +++++..|+.|++||..+++.+.+.-
T Consensus       306 ~--~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         306 T--SGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             E--EECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             E--eEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence            3  33332 3456888999999974 56788889999999999999877654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.75  E-value=1.2e-15  Score=127.88  Aligned_cols=267  Identities=9%  Similarity=-0.049  Sum_probs=168.7

Q ss_pred             CcccCCCcEEEEEEecCCC-----ceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC--C
Q 018293            1 MTINPNDAVIVCARNEDDV-----SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS--M   73 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~--~   73 (358)
                      +.|+|+|+.|+++......     ..-.+++|+....+.......+.    ....+....+..+.|+++++.+++..  .
T Consensus        71 ~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~----~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD----APRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             EEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCC----cceeEeccCCCcEEEEeCCCcEEEEEEcC
Confidence            4799999999998654311     12367888887653222111111    11112222233445688888766554  4


Q ss_pred             CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECC
Q 018293           74 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  153 (358)
Q Consensus        74 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  153 (358)
                      ++.+.+|+.......                               .+.....++.++|++...+++.+.|+.+.+|+..
T Consensus       147 ~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~  195 (373)
T d2madh_         147 GPAVGLVVQGGSSDD-------------------------------QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHA  195 (373)
T ss_pred             CCceEEeeccCCeEE-------------------------------EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcC
Confidence            567888887643221                               2445567889999977788899999999999999


Q ss_pred             CCceeeeecccc------cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee------------eecCCeeeEE
Q 018293          154 AGKCNLTLEHHT------DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------------AVAADVESLA  215 (358)
Q Consensus       154 ~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------~~~~~i~~~~  215 (358)
                      .++.......+.      .....+.+.+++  .++..+.++.+.+|+...........            ........++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (373)
T d2madh_         196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA  273 (373)
T ss_pred             CceeeEEEeeeccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeE
Confidence            887665553221      222334455544  56677788999999987654321110            0112233445


Q ss_pred             EcCCCC---------CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc-EEEEEeCCCcE
Q 018293          216 WDPHAE---------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLATGSTDKMV  285 (358)
Q Consensus       216 ~~~~~~---------~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i  285 (358)
                      +++++.         ..++....++.+.+||..++         +.+..+. +...+..++|+|||.. ++++++.|+.|
T Consensus       274 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~---------~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v  343 (373)
T d2madh_         274 YLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---------QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVL  343 (373)
T ss_pred             EecCCCeEEEecCCCceEEeecCCCeEEEEECCCC---------cEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeE
Confidence            555433         23445566788999999887         5455443 5567899999999844 45678899999


Q ss_pred             EEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293          286 KLWDLSNNQPSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       286 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                      ++||+.+++  .+..+..+......+++.++
T Consensus       344 ~v~D~~tg~--~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         344 HIYDAGAGD--QDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EEEECCCCC--EEEEECCCCCCCcEEEEecC
Confidence            999999998  46666666555666665443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=3.5e-15  Score=124.12  Aligned_cols=273  Identities=9%  Similarity=-0.021  Sum_probs=157.6

Q ss_pred             CcccCCCcEEEEEEecCCC-----ceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC--C
Q 018293            1 MTINPNDAVIVCARNEDDV-----SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS--M   73 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~--~   73 (358)
                      ++|+|+|+.|+++......     ..-.|++|+...+........+.    .....+...+..+.|+++++++++++  .
T Consensus        52 ~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~----~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  127 (355)
T d2bbkh_          52 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD----APRFLVGTYPWMTSLTPDGKTLLFYQFSP  127 (355)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT----CCCCCBSCCGGGEEECTTSSEEEEEECSS
T ss_pred             eEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCC----cceeecCCCCceEEEecCCCeeEEecCCC
Confidence            4799999999887432100     12278889987752222111111    11111122233456699999887664  5


Q ss_pred             CCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECC
Q 018293           74 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  153 (358)
Q Consensus        74 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  153 (358)
                      +..+.+|+..+++..........                    ....-......+.+++++..+++....++.+.+++..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~  187 (355)
T d2bbkh_         128 APAVGVVDLEGKAFKRMLDVPDC--------------------YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE  187 (355)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSE--------------------EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred             CceeeeeecCCCcEeeEEecCCc--------------------ceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc
Confidence            67899999976554432211000                    0000012233445556644333344444555555544


Q ss_pred             CCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee------------eecCCeeeEEEcCCCC
Q 018293          154 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------------AVAADVESLAWDPHAE  221 (358)
Q Consensus       154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------~~~~~i~~~~~~~~~~  221 (358)
                      ....     .+...+....+.+++ ..++.++.++.+.+|++..++......            ........+++++++.
T Consensus       188 ~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~  261 (355)
T d2bbkh_         188 VFHP-----EDEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD  261 (355)
T ss_dssp             CCSC-----TTSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT
T ss_pred             cccc-----eecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCC
Confidence            3322     233345556777777 678888999999999998765422111            1123345688888665


Q ss_pred             CeEEEEecC---------CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc-EEEEEeCCCcEEEEecC
Q 018293          222 HSFVVSLED---------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLATGSTDKMVKLWDLS  291 (358)
Q Consensus       222 ~~~~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~d~~  291 (358)
                      ..++.....         ..|.+||..+.         +.+..+.. ...+.+++|+|+|.. ++++++.|+.|++||.+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~v~v~d~~t~---------~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         262 RIYLLVDQRDEWRHKTASRFVVVLDAKTG---------ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTTC---------CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             eEEEEeccCCceeecCCCCeEEEEeCCCC---------cEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence            444433222         36999999987         55555543 355789999999854 45667789999999999


Q ss_pred             CCCceeeEecCCCCceeEEEEEcC
Q 018293          292 NNQPSCIASRNPKAGAVFSVAFSE  315 (358)
Q Consensus       292 ~~~~~~~~~~~~~~~~v~~~~~~~  315 (358)
                      +++  .+..+..+......+.+.+
T Consensus       332 tg~--~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         332 SGE--ELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             TCC--EEEEECCCCSSCCEEECCC
T ss_pred             CCC--EEEEEeCcCCCccEEEeCC
Confidence            998  4555555444444444443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.64  E-value=6.9e-14  Score=120.92  Aligned_cols=141  Identities=10%  Similarity=0.111  Sum_probs=89.8

Q ss_pred             cccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeec-CCcccceeeecCCccccCCCceEEecC--------
Q 018293            2 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIII-PAFPLCMAWLDCPLKDREKGNFMAVGS--------   72 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~--------   72 (358)
                      ...|++.++..  .++     .+++|+...++...++..+.... ...+.       ++.|||||++|+.++        
T Consensus        23 ~W~~d~~~~~~--~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~~i~-------~~~~SpDg~~i~~~~~~~~~~r~   88 (470)
T d2bgra1          23 RWISDHEYLYK--QEN-----NILVFNAEYGNSSVFLENSTFDEFGHSIN-------DYSISPDGQFILLEYNYVKQWRH   88 (470)
T ss_dssp             EECSSSEEEEE--SSS-----CEEEEETTTCCEEEEECTTTTTTSSSCCC-------EEEECTTSSEEEEEEEEEECSSS
T ss_pred             EeCCCCEEEEE--cCC-----cEEEEECCCCCEEEEEchhhhhhccCccc-------eeEECCCCCEEEEEECCcceeee
Confidence            35677765542  333     57888888764333332221110 11112       345699999999874        


Q ss_pred             -CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEE
Q 018293           73 -MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  151 (358)
Q Consensus        73 -~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd  151 (358)
                       .++.+.|||+.+++..                            .+..|...+..+.|||+ ++.+|.. .++.+.+|+
T Consensus        89 s~~~~~~l~d~~~~~~~----------------------------~l~~~~~~~~~~~~SPD-G~~ia~~-~~~~l~~~~  138 (470)
T d2bgra1          89 SYTASYDIYDLNKRQLI----------------------------TEERIPNNTQWVTWSPV-GHKLAYV-WNNDIYVKI  138 (470)
T ss_dssp             CEEEEEEEEETTTTEEC----------------------------CSSCCCTTEEEEEECSS-TTCEEEE-ETTEEEEES
T ss_pred             ccCceEEEEECCCCccc----------------------------ccccCCccccccccccC-cceeeEe-ecccceEEE
Confidence             3578889999764322                            34468888999999999 5567664 578899999


Q ss_pred             CCCCceeeeecc------------------cccceeeEEEcCCCCcEEEEEeCC
Q 018293          152 VAAGKCNLTLEH------------------HTDKVQAVAWNHHSPQILLSGSFD  187 (358)
Q Consensus       152 ~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~~l~~~~~d  187 (358)
                      ..+++..+....                  ..+....+.|+||| +.++....|
T Consensus       139 ~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDG-k~ia~~~~d  191 (470)
T d2bgra1         139 EPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFN  191 (470)
T ss_dssp             STTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEE
T ss_pred             CCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCC-CccceeEec
Confidence            998876544321                  12234568899999 677776543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.56  E-value=1.9e-13  Score=114.04  Aligned_cols=261  Identities=8%  Similarity=0.047  Sum_probs=157.3

Q ss_pred             EEecCCCCeEEEEEcccccCcCceeecCCccc-------ccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           68 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDE-------EKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        68 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      +++|+.+|.|+||++.+++.+..+.++.....       +.+....    ..........|.-.......+|||+.++++
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~----~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~   89 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILG----GDQQYLNGDCHHPHISMTDGRYDGKYLFIN   89 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHC----SSSCCSCCCBCCCEEEEETTEEEEEEEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEe----cccccccCcccCCCcceecccCCCCEEEEE
Confidence            67888999999999998887766555432111       0000000    000111223455667778889996545566


Q ss_pred             EEcCCeEEEEECCCCceeeeec-ccccceeeEEEcCCCCcEEEEEeCCCcE------------------EEEEcccCCCc
Q 018293          141 ASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSV------------------VMKDARISTHS  201 (358)
Q Consensus       141 ~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i------------------~i~d~~~~~~~  201 (358)
                      ...++.|.++|++++++...+. .+...+..++|+|++....+++..+..+                  ..+|..+.+..
T Consensus        90 d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~  169 (441)
T d1qnia2          90 DKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA  169 (441)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred             cCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence            6688999999999998877664 3567789999999985444444333333                  34666554443


Q ss_pred             cceeeecCCeeeEEEcCCCCCeEEEEecC-Ce--------------EEEEEcccC-------CCCC----------CCCC
Q 018293          202 GFKWAVAADVESLAWDPHAEHSFVVSLED-GT--------------IKGFDIRTA-------KSDP----------DSTS  249 (358)
Q Consensus       202 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-g~--------------i~i~d~~~~-------~~~~----------~~~~  249 (358)
                      . ..........+.++|++. ++++++.+ ..              +.+.+....       +...          ....
T Consensus       170 ~-qI~v~~~p~~v~~spdGk-~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~  247 (441)
T d1qnia2         170 W-QVIVDGNLDNTDADYTGK-YATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE  247 (441)
T ss_dssp             E-EEEESSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS
T ss_pred             E-EEecCCCccceEECCCCC-EEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC
Confidence            3 233456688899999766 45444432 11              122221100       0000          0011


Q ss_pred             CCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCc---------eeeEecCCCCceeEEEEEcCCCCeE
Q 018293          250 QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP---------SCIASRNPKAGAVFSVAFSEDSPFV  320 (358)
Q Consensus       250 ~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~  320 (358)
                      ...+..+..... ...+.++|||..+++++..+++|.+||+.+.+.         .++.......-.....+|+++|. .
T Consensus       248 ~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~-~  325 (441)
T d1qnia2         248 SEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN-A  325 (441)
T ss_dssp             CSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSE-E
T ss_pred             CceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCce-E
Confidence            134455555444 478999999955566778899999999865221         11111111122245578999997 6


Q ss_pred             EEEEccCCeEEEEEcc
Q 018293          321 LAIGGSKGKLEIWDTL  336 (358)
Q Consensus       321 l~~~~~dg~i~vw~~~  336 (358)
                      +.+...|..|..|++.
T Consensus       326 yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         326 YTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EEEETTTTEEEEEEHH
T ss_pred             EEcccccceEEEeccc
Confidence            8999999999999985

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=3.6e-13  Score=112.48  Aligned_cols=251  Identities=10%  Similarity=-0.048  Sum_probs=144.7

Q ss_pred             cccCCCcEEEEEEecCC-----CceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC-CCC
Q 018293            2 TINPNDAVIVCARNEDD-----VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS-MEP   75 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg   75 (358)
                      .++|+|+.|+++.....     ...-.|++|+....+.......+    ..........+..++|+|||++|+++. .++
T Consensus        71 a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p----~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~  146 (368)
T d1mdah_          71 VAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP----DAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             EECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET----TSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             eECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCC----ccceecccCCccceEECCCCCEEEEEeCCCC
Confidence            58999999998854211     02336899998765221111111    011111222233556799999998775 579


Q ss_pred             eEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCC
Q 018293           76 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  155 (358)
Q Consensus        76 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  155 (358)
                      .+.+||+.+.+.......                           +..    ..+.+.+...+++.+.||.+.++++...
T Consensus       147 ~v~~~d~~~~~~~~~~~~---------------------------~~~----~~~~~~~~~~~v~~~~Dg~~~~~~~~~~  195 (368)
T d1mdah_         147 AAAGLSVPGASDDQLTKS---------------------------ASC----FHIHPGAAATHYLGSCPASLAASDLAAA  195 (368)
T ss_dssp             CEEEEEETTTEEEEEEEC---------------------------SSC----CCCEEEETTEEECCCCTTSCEEEECCSS
T ss_pred             eEEEEECCCCcEeEEeec---------------------------cCc----ceEccCCCceEEEEcCCCCEEEEEecCC
Confidence            999999986554432211                           111    0112233445666666777777776544


Q ss_pred             ceee------eecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce------------eeecCCeeeEEEc
Q 018293          156 KCNL------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK------------WAVAADVESLAWD  217 (358)
Q Consensus       156 ~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------~~~~~~i~~~~~~  217 (358)
                      ....      .+..+...+....+.+++ ..+.  ..++.+.+++..........            .........++++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~  272 (368)
T d1mdah_         196 PAAAGIVGAQCTGAQNCSSQAAQANYPG-MLVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL  272 (368)
T ss_dssp             CCCCEECCCCSCTTSCBCSCCEEETTTT-EEEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred             ceeeeeeecccccccccceeecccccCc-EEEE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEc
Confidence            3221      122344455567777776 3333  33556666666544322110            0112334568888


Q ss_pred             CCCCCeEEEEecC--------CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcE-EEEEeCCCcEEEE
Q 018293          218 PHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL-LATGSTDKMVKLW  288 (358)
Q Consensus       218 ~~~~~~~~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~-l~~~~~dg~i~i~  288 (358)
                      +++..++++...+        ..|.+||..++         +.+..+. +...+.+++|+|||..+ ++++..|+.|++|
T Consensus       273 ~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~---------~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~  342 (368)
T d1mdah_         273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVG---------QTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIY  342 (368)
T ss_dssp             TTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---------CEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred             CCCCEEEEEecCCCceeecCCceEEEEECCCC---------cEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEE
Confidence            8766544444332        35889999887         4444443 33568899999998544 5667778999999


Q ss_pred             ecCCCCceeeEecC
Q 018293          289 DLSNNQPSCIASRN  302 (358)
Q Consensus       289 d~~~~~~~~~~~~~  302 (358)
                      |..+++.  +..+.
T Consensus       343 D~~tgk~--~~~i~  354 (368)
T d1mdah_         343 DAASDQD--QSSVE  354 (368)
T ss_dssp             ESSSCEE--EEECC
T ss_pred             ECCCCCE--EEEEE
Confidence            9999984  44444

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=5.9e-11  Score=94.11  Aligned_cols=253  Identities=11%  Similarity=0.011  Sum_probs=144.7

Q ss_pred             EEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC-C--eEEEEEccccc
Q 018293           10 IVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-P--AIEIWDLDVID   86 (358)
Q Consensus        10 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g--~i~vw~~~~~~   86 (358)
                      ..++..+++....+||+.+........+......     ..       +++|||||+.||..... +  .+.+.+.....
T Consensus         7 ay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~-----~~-------sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~   74 (269)
T d2hqsa1           7 AYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQP-----LM-------SPAWSPDGSKLAYVTFESGRSALVIQTLANGA   74 (269)
T ss_dssp             EEEEECSSSSCCEEEEEEETTSCSCEEEEEESSC-----EE-------EEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             EEEEEeCCCCceEEEEEEcCCCCCcEEEecCCCc-----ee-------eeEECCCCCEEEEEEeeccCcceeeeecccCc
Confidence            3344443333455799988765422223222211     11       34569999999865433 3  34444443221


Q ss_pred             CcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEEC--CCCceeeeeccc
Q 018293           87 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV--AAGKCNLTLEHH  164 (358)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~  164 (358)
                      .                            ..+..+........|+|++..+++....++...++..  ........ ...
T Consensus        75 ~----------------------------~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  125 (269)
T d2hqsa1          75 V----------------------------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDG  125 (269)
T ss_dssp             E----------------------------EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC-CCC
T ss_pred             e----------------------------eEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceee-eec
Confidence            1                            1222466778899999996554444444444333332  22222222 223


Q ss_pred             ccceeeEEEcCCCCcEEEEEeCCCcEEEE--EcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCC
Q 018293          165 TDKVQAVAWNHHSPQILLSGSFDRSVVMK--DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK  242 (358)
Q Consensus       165 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~  242 (358)
                      ........+++++...+++...+|...+|  ++....... ............|+|++..++......+...+|..... 
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~-  203 (269)
T d2hqsa1         126 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA-  203 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT-
T ss_pred             cccccccccccccccceecccccCCceEeeeeccccccee-eecccccccccccccccceeEEEeecCCceeeeEeecc-
Confidence            34445567777775666666667755554  444433222 22334556678899987766666666666666666544 


Q ss_pred             CCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCC--CcEEEEecCCCCceeeEecCCCCceeEEEEEcCC
Q 018293          243 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  316 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  316 (358)
                              ........+........|+|||..++++....  ..|+++++..+.   ...+....+.+...+|+|-
T Consensus       204 --------~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~---~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         204 --------TGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF---KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             --------TCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC---EEECCCSSSEEEEEEECCC
T ss_pred             --------cccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC---EEEEeCCCCcEEeEEeCCC
Confidence                    22334444566677889999994444444333  358899998776   3445555677888999983

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.46  E-value=2.4e-13  Score=113.40  Aligned_cols=245  Identities=11%  Similarity=0.084  Sum_probs=152.8

Q ss_pred             ccCCCceEEec-CCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           61 DREKGNFMAVG-SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        61 ~s~~~~~l~~g-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      ++|||++|++. ..++.|.++|+++++......                          ..+...+..++|+|++....+
T Consensus        79 gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~--------------------------iP~g~gphgi~~spdg~t~YV  132 (441)
T d1qnia2          79 GRYDGKYLFINDKANTRVARIRLDIMKTDKITH--------------------------IPNVQAIHGLRLQKVPKTNYV  132 (441)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------CTTCCCEEEEEECCSSBCCEE
T ss_pred             ccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEe--------------------------cCCCCCccceEEeccCCEEEE
Confidence            47899988555 577899999998765443221                          135577899999999554334


Q ss_pred             EEEcCCe------------------EEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCC-------------
Q 018293          140 SASADKQ------------------VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-------------  188 (358)
Q Consensus       140 s~~~dg~------------------v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------------  188 (358)
                      ++..+..                  +..+|..+.+...++... .....+.|+|+| +++++++.+.             
T Consensus       133 ~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdG-k~a~vt~~nse~~~~id~~t~~~  210 (441)
T d1qnia2         133 FCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTG-KYATSTCYNSERAVDLAGTMRND  210 (441)
T ss_dssp             EEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCSS
T ss_pred             EeccCCcccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCC-CEEEEEecCCCceEEEeccCcce
Confidence            4433333                  355888888877777643 457889999999 6666655432             


Q ss_pred             ----------------------------cEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          189 ----------------------------SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       189 ----------------------------~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                                                  .+.+++....+... ..........+.++|++..+++++..+++|.+||+.+
T Consensus       211 ~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~-~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         211 RDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR-YIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             BCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE-EECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             EEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE-EEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence                                        22222222222222 2233445678999998887777888999999999976


Q ss_pred             CCCCCCCCCCCccEEEeec---CCceeEEEecCCCCcEEEEEeCCCcEEEEecCC-------CCce-eeEec-----CCC
Q 018293          241 AKSDPDSTSQQSSFTLHAH---DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN-------NQPS-CIASR-----NPK  304 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~-~~~~~-----~~~  304 (358)
                      ........ ......+.++   .-.....+|.++| +.+.+...|..|..|++..       .+.. .+...     .+|
T Consensus       290 ~~~~~~~~-~~~~~~~~~~~~~glgplh~~fd~~g-~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH  367 (441)
T d1qnia2         290 LDDLFEDK-IELRDTIVAEPELGLGPLHTTFDGRG-NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGH  367 (441)
T ss_dssp             HHHHTTTS-SCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE
T ss_pred             hhhHhhcc-CCcceEEEeecccccCcccceecCCc-eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCC
Confidence            42110000 0111111111   1223456899988 7788888899999999742       1111 11122     356


Q ss_pred             CceeEEEEEcCCCCeEEEEE---ccCCe----------EEEEEccC
Q 018293          305 AGAVFSVAFSEDSPFVLAIG---GSKGK----------LEIWDTLS  337 (358)
Q Consensus       305 ~~~v~~~~~~~~~~~~l~~~---~~dg~----------i~vw~~~~  337 (358)
                      ...+.+.+++|||+| |+++   +.|+.          -.+.|+..
T Consensus       368 ~~~~~~~t~~pdGk~-l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~  412 (441)
T d1qnia2         368 NHASLTESRDADGKW-LVVLSKFSKDRFLPVGPLHPENDQLIDISG  412 (441)
T ss_dssp             EEETTTTSTTCCCCE-EEEEESCCGGGSCCCSSSCCEEEEEEECSS
T ss_pred             CccccccccCCCCcE-EEecCccccccCcCCCCCCCccceeEEecC
Confidence            666667789999997 7778   55543          46778763

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.43  E-value=1e-09  Score=90.80  Aligned_cols=163  Identities=12%  Similarity=0.104  Sum_probs=103.8

Q ss_pred             ceeeEEEcCCCCcEEEEEe-CCCcEEEEEcccCCCcccee-----eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEccc
Q 018293          167 KVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHSGFKW-----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  240 (358)
Q Consensus       167 ~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~  240 (358)
                      .+.++.|+|++ +++++++ ....|.+|+...........     ........++|+|++...+++.-.++.|.+|++..
T Consensus       146 h~h~v~~sPdG-~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         146 GIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             cceEEEECCCC-CEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            47899999999 6555554 45678888765443322111     12356888999998775566676789999999976


Q ss_pred             CCCCCCCCCCCccEEEe-----------------ecCCceeEEEecCCCCcEEEEEeC-CC-----cEEEEecCCCCce-
Q 018293          241 AKSDPDSTSQQSSFTLH-----------------AHDKAVCTISYNPLVPNLLATGST-DK-----MVKLWDLSNNQPS-  296 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~-----------------~~~~~i~~i~~~~~~~~~l~~~~~-dg-----~i~i~d~~~~~~~-  296 (358)
                      ...       .......                 .+......+.++|+| ++|+++.. +.     .|..|++...... 
T Consensus       225 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~  296 (365)
T d1jofa_         225 ATH-------MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             TTC-------CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             CCc-------eEEEEeeeeccccccccccccccccccCCccceEECCCC-CEEEEEcccCCCccceEEEEEEecCCCcee
Confidence            532       1111111                 112235678999999 66666532 22     3777877654321 


Q ss_pred             ---eeEecCCCCceeEEEEEcC-CCCeEEEEEccCCeEEEEEccCC
Q 018293          297 ---CIASRNPKAGAVFSVAFSE-DSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       297 ---~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                         ..............++++| +|++++++...++.|.+|++...
T Consensus       297 ~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         297 KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence               1112222233456789998 89988888788899999998654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.37  E-value=1.9e-10  Score=90.63  Aligned_cols=234  Identities=11%  Similarity=0.083  Sum_probs=145.4

Q ss_pred             CccccCCCceEEec-CCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCc
Q 018293           58 PLKDREKGNFMAVG-SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  136 (358)
Q Consensus        58 ~~~~s~~~~~l~~g-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  136 (358)
                      .++++++|++.++. +..+.+..++........                          .... -......++++++ +.
T Consensus        18 ~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~--------------------------~~~~-~~~~p~gvav~~~-g~   69 (260)
T d1rwia_          18 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV--------------------------LPFN-GLYQPQGLAVDGA-GT   69 (260)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEEC----CEEE--------------------------CCCC-SCCSCCCEEECTT-CC
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEE--------------------------eccC-CccCceEEEEcCC-CC
Confidence            34458899866654 455777777654321110                          0111 1233567889998 56


Q ss_pred             EEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEE
Q 018293          137 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW  216 (358)
Q Consensus       137 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  216 (358)
                      ++++....+.+++++-.+...+..... .....++++.+++ +++++-..+..+..++...................+++
T Consensus        70 i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~  147 (260)
T d1rwia_          70 VYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV  147 (260)
T ss_dssp             EEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEE
T ss_pred             EEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccc-eeEeeccccccccccccccceeeeeeecccCCcceeee
Confidence            777766666666665555544433332 3456889999988 77776666666777776554332222222345678999


Q ss_pred             cCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCce
Q 018293          217 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  296 (358)
Q Consensus       217 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  296 (358)
                      ++++ +++++...++.|..+|....         .........-.....+++.++| +++++....+.|..++...... 
T Consensus       148 ~~~g-~~~v~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~~~~~~~~-  215 (260)
T d1rwia_         148 DNSG-NVYVTDTDNNRVVKLEAESN---------NQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS-  215 (260)
T ss_dssp             CTTC-CEEEEEGGGTEEEEECTTTC---------CEEECCCSSCCSEEEEEECTTC-CEEEEETTTTEEEEECTTCSCC-
T ss_pred             cCCC-CEeeeccccccccccccccc---------eeeeeeccccCCCccceeeeee-eeeeeecCCCEEEEEeCCCCeE-
Confidence            9954 57888888889999987754         2111112333456889999988 7888877788888888765542 


Q ss_pred             eeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEc
Q 018293          297 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  335 (358)
Q Consensus       297 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~  335 (358)
                       .......-.....|+++++|. ++++-..++.|+.++.
T Consensus       216 -~~~~~~~~~~P~~i~~d~~g~-l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         216 -TVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTS  252 (260)
T ss_dssp             -EECCCCSCCCEEEEEECTTCC-EEEEEGGGTEEEEECC
T ss_pred             -EEEccCCCCCeEEEEEeCCCC-EEEEECCCCEEEEEeC
Confidence             211122234567899999998 6877677777776554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.35  E-value=2.7e-09  Score=86.15  Aligned_cols=204  Identities=8%  Similarity=0.047  Sum_probs=127.3

Q ss_pred             cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccc----cceeeEEEcCCCCcEEEEEeC-------------
Q 018293          124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT----DKVQAVAWNHHSPQILLSGSF-------------  186 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~-------------  186 (358)
                      ....+.|.++ +..++++...+.+...+.+............    ...+.+++.++| .+.++-..             
T Consensus        72 ~P~Gl~~~~d-g~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~~~~~  149 (314)
T d1pjxa_          72 IPAGCQCDRD-ANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             CEEEEEECSS-SSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTS
T ss_pred             cceeEEEeCC-CCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCC-CEEEecCccCcccccccceec
Confidence            4678999999 4566677777778888976553322111111    135779999998 66665422             


Q ss_pred             --CCcEEEEEcccCCCccceeeecCCeeeEEEcCCCC----CeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee-c
Q 018293          187 --DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE----HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-H  259 (358)
Q Consensus       187 --dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~  259 (358)
                        .|.|..++..  .........-...+.++|+|++.    .++++-+..+.|..||+.......   ..+....+.. .
T Consensus       150 ~~~G~v~~~~~d--g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~---~~~~~~~~~~~~  224 (314)
T d1pjxa_         150 EKFGSIYCFTTD--GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE---NKKVWGHIPGTH  224 (314)
T ss_dssp             SSCEEEEEECTT--SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE---EEEEEEECCCCS
T ss_pred             cCCceEEEEeec--CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccc---eeeEEEEccccc
Confidence              2334444332  22222223334457889988643    255556778899999987541100   0000111111 1


Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          260 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       260 ~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      ......+++..+| ++.++....+.|.+||...++......  ......++++|.|+++.++++.+.+|.|...++..
T Consensus       225 ~~~pdGiavD~~G-nlyVa~~~~g~I~~~dp~~g~~~~~i~--~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         225 EGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             cccceeeEEecCC-cEEEEEcCCCEEEEEeCCCCEEEEEEE--CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            2235689999998 777777778999999988776433333  33456889999999987888888899998888753

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.35  E-value=7.7e-11  Score=101.44  Aligned_cols=149  Identities=12%  Similarity=0.162  Sum_probs=102.9

Q ss_pred             ccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEE
Q 018293           61 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  140 (358)
Q Consensus        61 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  140 (358)
                      |.++++++...  |+.|.+||+.+++....                      .....+..|...|.++.|||| +++|+.
T Consensus        24 W~~d~~~~~~~--~~~~~~~~~~t~~~~~~----------------------~~~~~~~~~~~~i~~~~~SpD-g~~i~~   78 (470)
T d2bgra1          24 WISDHEYLYKQ--ENNILVFNAEYGNSSVF----------------------LENSTFDEFGHSINDYSISPD-GQFILL   78 (470)
T ss_dssp             ECSSSEEEEES--SSCEEEEETTTCCEEEE----------------------ECTTTTTTSSSCCCEEEECTT-SSEEEE
T ss_pred             eCCCCEEEEEc--CCcEEEEECCCCCEEEE----------------------EchhhhhhccCccceeEECCC-CCEEEE
Confidence            36788888754  67899999987654221                      111245567888999999999 567776


Q ss_pred             EEc---------CCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee-----
Q 018293          141 ASA---------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-----  206 (358)
Q Consensus       141 ~~~---------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----  206 (358)
                      ++.         ++.+.+||+++++. ..+..+...+..+.|+|+| +.++.. .++.+.+|+..+++.......     
T Consensus        79 ~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG-~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~  155 (470)
T d2bgra1          79 EYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI  155 (470)
T ss_dssp             EEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTT
T ss_pred             EECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCc-ceeeEe-ecccceEEECCCCceeeeeeccCCCc
Confidence            643         56789999998874 5577788899999999999 667665 477899999887765432211     


Q ss_pred             -------------ecCCeeeEEEcCCCCCeEEEEe-cCCeEEEEEc
Q 018293          207 -------------VAADVESLAWDPHAEHSFVVSL-EDGTIKGFDI  238 (358)
Q Consensus       207 -------------~~~~i~~~~~~~~~~~~~~~~~-~dg~i~i~d~  238 (358)
                                   ..+....+.|+|++. .++... .+..+..|++
T Consensus       156 ~~~g~~d~~~~~~~~~~~~~~~wSPDGk-~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         156 IYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             EEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTCCEEEE
T ss_pred             ccccccceeeeeeecCCccccEECCCCC-ccceeEecCCcCceEEE
Confidence                         112356688999776 555543 3343544444

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.32  E-value=5.2e-09  Score=86.46  Aligned_cols=159  Identities=13%  Similarity=0.086  Sum_probs=97.3

Q ss_pred             cEEEEecCCCCCcEEEEEE-cCCeEEEEECCCC-cee--eee--cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc
Q 018293          124 SVLGLAWNKEFRNILASAS-ADKQVKIWDVAAG-KCN--LTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  197 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~-~~~--~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  197 (358)
                      .+.++.|+|+|. +++++. ....|.+|+.... +..  ...  .......+.+.|+|++....++...+++|.+|++..
T Consensus       146 h~h~v~~sPdG~-~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         146 GIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             cceEEEECCCCC-EEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            478999999954 555554 4567888876543 221  111  123456789999999954556666789999999876


Q ss_pred             CCCccceee-------------------ecCCeeeEEEcCCCCCeEEEEe-cC-----CeEEEEEcccCCCCCCCCCCCc
Q 018293          198 STHSGFKWA-------------------VAADVESLAWDPHAEHSFVVSL-ED-----GTIKGFDIRTAKSDPDSTSQQS  252 (358)
Q Consensus       198 ~~~~~~~~~-------------------~~~~i~~~~~~~~~~~~~~~~~-~d-----g~i~i~d~~~~~~~~~~~~~~~  252 (358)
                      .........                   .......+.++|++. +++++. .+     +.|..|++...         ..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~-~lyvsnr~~~~~~~~~i~~~~~~~~---------g~  294 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK-YMFASSRANKFELQGYIAGFKLRDC---------GS  294 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS-EEEEEEEESSTTSCCEEEEEEECTT---------SC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCC-EEEEEcccCCCccceEEEEEEecCC---------Cc
Confidence            554321110                   112345789999766 454442 22     23777777654         11


Q ss_pred             cEEE------eecCCceeEEEecC-CCCcEEEE-EeCCCcEEEEecCCCC
Q 018293          253 SFTL------HAHDKAVCTISYNP-LVPNLLAT-GSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       253 ~~~~------~~~~~~i~~i~~~~-~~~~~l~~-~~~dg~i~i~d~~~~~  294 (358)
                      +...      .........++++| +| ++|++ ...++.|.+|+++...
T Consensus       295 ~~~~~~~~~~~~~G~~p~~i~~~p~~G-~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         295 IEKQLFLSPTPTSGGHSNAVSPCPWSD-EWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEEEEEECSSCCTTCCCEEECTTCT-TEEEEECSSSCEEEEEEEETTE
T ss_pred             eeeEeEeeEEEcCCCCccEEEecCCCC-CEEEEEeCCCCeEEEEEEeCCc
Confidence            1111      11233457799998 56 65554 4678999999886654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.30  E-value=6.9e-10  Score=89.41  Aligned_cols=224  Identities=13%  Similarity=0.107  Sum_probs=146.8

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      .++++|||+++++...++.|..|+.+...  .                           .+......+.+++|.++ +++
T Consensus        32 ~iAv~pdG~l~vt~~~~~~I~~i~p~g~~--~---------------------------~~~~~~~~~~gla~~~d-G~l   81 (302)
T d2p4oa1          32 NLASAPDGTIFVTNHEVGEIVSITPDGNQ--Q---------------------------IHATVEGKVSGLAFTSN-GDL   81 (302)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCCE--E---------------------------EEEECSSEEEEEEECTT-SCE
T ss_pred             CEEECCCCCEEEEeCCCCEEEEEeCCCCE--E---------------------------EEEcCCCCcceEEEcCC-CCe
Confidence            34568999999999999998888754211  1                           11234567899999999 568


Q ss_pred             EEEEEcCCeEEEEECCCCce-eeee--cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCcccee---------
Q 018293          138 LASASADKQVKIWDVAAGKC-NLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---------  205 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~-~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------  205 (358)
                      +++...++.+..|+...... ...+  .........+.+.+++ +++++.+.++.+..+|...........         
T Consensus        82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  160 (302)
T d2p4oa1          82 VATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNS  160 (302)
T ss_dssp             EEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSST
T ss_pred             EEEecCCceEEEEEecccccceeeccccCCccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCccceeec
Confidence            88888888888887654321 1111  1234567889999998 888888888888888876553221111         


Q ss_pred             -eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc
Q 018293          206 -AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  284 (358)
Q Consensus       206 -~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  284 (358)
                       ........+.++.  ..++++.+..+.|..++......       ...............+++.++| +++++...++.
T Consensus       161 ~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~pdgia~d~dG-~l~va~~~~~~  230 (302)
T d2p4oa1         161 ESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDK-------PGEPEIFVEQTNIDDFAFDVEG-NLYGATHIYNS  230 (302)
T ss_dssp             TCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSC-------BCCCEEEEESCCCSSEEEBTTC-CEEEECBTTCC
T ss_pred             cCcccccccccccC--CceeeecCCCCeEEecccccccc-------ccccccccCCCCCcceEECCCC-CEEEEEcCCCc
Confidence             1112345566654  45777778889999998876532       1111222233446789999998 78888778899


Q ss_pred             EEEEecCCCCceeeEecCCCCceeEEEEE---cCCCCeEEEE
Q 018293          285 VKLWDLSNNQPSCIASRNPKAGAVFSVAF---SEDSPFVLAI  323 (358)
Q Consensus       285 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~  323 (358)
                      |..++..... ..+......-...++++|   .+|++.++++
T Consensus       231 V~~i~p~G~~-~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvt  271 (302)
T d2p4oa1         231 VVRIAPDRST-TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV  271 (302)
T ss_dssp             EEEECTTCCE-EEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred             EEEECCCCCE-EEEEecCCCCCCceEEEEcCCCCCCCEEEEE
Confidence            9999876432 233333333345789999   6788865554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=1.1e-08  Score=80.73  Aligned_cols=208  Identities=9%  Similarity=0.037  Sum_probs=123.1

Q ss_pred             CcccEEEEecCCCCCcEEEEEEc-CC--eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEccc
Q 018293          121 HTDSVLGLAWNKEFRNILASASA-DK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  197 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  197 (358)
                      +...+...+||||| +.||-... ++  .+.+.+...+... .+..+........|+|++..++.....++...++....
T Consensus        37 ~~~~~~sP~wSPDG-k~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          37 SPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             ESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             CCCceeeeEECCCC-CEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence            45668889999995 45654433 33  4666666655543 44446677888999999955555555555555544433


Q ss_pred             CCCcc-ceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEE
Q 018293          198 STHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  276 (358)
Q Consensus       198 ~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l  276 (358)
                      ..... .............+++++...+++...+|...+|......        .....+...........|+|++..++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~spdg~~~~  186 (269)
T d2hqsa1         115 ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING--------GAPQRITWEGSQNQDADVSSDGKFMV  186 (269)
T ss_dssp             TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--------SCCEECCCSSSEEEEEEECTTSSEEE
T ss_pred             ccccceeeeeccccccccccccccccceecccccCCceEeeeeccc--------ccceeeecccccccccccccccceeE
Confidence            32221 1122333344556777666666676667655555444331        23334445566778889999995455


Q ss_pred             EEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccC--CeEEEEEccCCCc
Q 018293          277 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLSDAG  340 (358)
Q Consensus       277 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vw~~~~~~~  340 (358)
                      ......+...+|.........  ....+........|+|||++++.+....  ..|+++++..+..
T Consensus       187 ~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         187 MVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             EEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             EEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            555555555555443332112  2233445667789999999866655433  4688899876543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.27  E-value=4.2e-09  Score=83.63  Aligned_cols=243  Identities=13%  Similarity=0.107  Sum_probs=150.9

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      .++++++|+++++-..+..|++||.+. +.........                     ...+.......+++.++.+..
T Consensus        27 gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~---------------------~~~~~~~~p~~~~~~~~~~~~   84 (279)
T d1q7fa_          27 GVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECG---------------------KRDSQLLYPNRVAVVRNSGDI   84 (279)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBS---------------------SSTTCBSSEEEEEEETTTTEE
T ss_pred             EEEEcCCCCEEEEECCCCEEEEEeCCC-CEEEEecccC---------------------CCccccccccccccccccccc
Confidence            344588999888877788999998652 2211110000                     001122234455555553444


Q ss_pred             EEEE-EcCCeEEEEECCCCceeeeec-ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce--eeecCCeee
Q 018293          138 LASA-SADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADVES  213 (358)
Q Consensus       138 l~s~-~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~  213 (358)
                      +++. +.++.|..++. .++....+. ........+++.+++ .++++....+.+.+++.... .....  .........
T Consensus        85 ~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~  161 (279)
T d1q7fa_          85 IVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGN-VLHKFGCSKHLEFPNG  161 (279)
T ss_dssp             EEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSC-EEEEEECTTTCSSEEE
T ss_pred             ceeccCCccccccccc-cccceeecCCCcccccceeccccCC-cEEEEeeccceeeEeccCCc-eeecccccccccccce
Confidence            4443 44567777774 466555553 234557789999988 77777777777888875432 21111  112345678


Q ss_pred             EEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEe--ecCCceeEEEecCCCCcEEEEEeC-CCcEEEEec
Q 018293          214 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGST-DKMVKLWDL  290 (358)
Q Consensus       214 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~i~d~  290 (358)
                      +++.++ ++++++....+.|++||...          ..+..+.  +.......|++.++| +++++-.. ++.|.+|+.
T Consensus       162 i~~d~~-g~i~v~d~~~~~V~~~d~~G----------~~~~~~g~~g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         162 VVVNDK-QEIFISDNRAHCVKVFNYEG----------QYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             EEECSS-SEEEEEEGGGTEEEEEETTC----------CEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECT
T ss_pred             eeeccc-eeEEeeeccccceeeeecCC----------ceeeeecccccccCCcccccccCC-eEEEEECCCCcEEEEECC
Confidence            888885 45777888889999999753          3344442  234457889999998 77766543 456999985


Q ss_pred             CCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCc
Q 018293          291 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  340 (358)
Q Consensus       291 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~  340 (358)
                       +++................+++.|+|. +++ ++.++.|++|.......
T Consensus       230 -~G~~~~~~~~~~~~~~p~~vav~~dG~-l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         230 -DGQLISALESKVKHAQCFDVALMDDGS-VVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             -TSCEEEEEEESSCCSCEEEEEEETTTE-EEE-EETTTEEEEEECSCCCC
T ss_pred             -CCCEEEEEeCCCCCCCEeEEEEeCCCc-EEE-EeCCCeEEEEEeeeecC
Confidence             455332333233334578899999997 455 45789999999876543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=3.4e-09  Score=83.28  Aligned_cols=192  Identities=9%  Similarity=0.032  Sum_probs=122.9

Q ss_pred             CccccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcE
Q 018293           58 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  137 (358)
Q Consensus        58 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  137 (358)
                      .++++++|+++++....+.+++++-.+.....                           . ........++++.++ +++
T Consensus        61 gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~---------------------------~-~~~~~~p~~iavd~~-g~i  111 (260)
T d1rwia_          61 GLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL---------------------------P-FDGLNYPEGLAVDTQ-GAV  111 (260)
T ss_dssp             CEEECTTCCEEEEETTTEEEEECTTCSCCEEC---------------------------C-CCSCCSEEEEEECTT-CCE
T ss_pred             EEEEcCCCCEEEeeeeeceeeeeeeccceeee---------------------------e-eeeeeeccccccccc-cee
Confidence            44558899988888777777766543221111                           0 112345788999998 567


Q ss_pred             EEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEc
Q 018293          138 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  217 (358)
Q Consensus       138 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  217 (358)
                      +++-..+..+..++...................+++.+++ +++++...++.|..+|...................++++
T Consensus       112 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d  190 (260)
T d1rwia_         112 YVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVD  190 (260)
T ss_dssp             EEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTC-CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEEC
T ss_pred             EeeccccccccccccccceeeeeeecccCCcceeeecCCC-CEeeeccccccccccccccceeeeeeccccCCCccceee
Confidence            7766667778777765543222222223456789999988 778888888889999977654333222334557889999


Q ss_pred             CCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE-eecCCceeEEEecCCCCcEEEEEeCCCcEEEEecC
Q 018293          218 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  291 (358)
Q Consensus       218 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~  291 (358)
                      ++ ++++++....+.|..++....         . ...+ ...-.....|+++++| +++++-..++.|+.++..
T Consensus       191 ~~-g~l~vsd~~~~~i~~~~~~~~---------~-~~~~~~~~~~~P~~i~~d~~g-~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         191 EA-GTVYVTEHNTNQVVKLLAGST---------T-STVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             TT-CCEEEEETTTTEEEEECTTCS---------C-CEECCCCSCCCEEEEEECTTC-CEEEEEGGGTEEEEECCC
T ss_pred             ee-eeeeeeecCCCEEEEEeCCCC---------e-EEEEccCCCCCeEEEEEeCCC-CEEEEECCCCEEEEEeCC
Confidence            85 457777777888888876543         1 1111 1122346789999987 777776667767665543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.13  E-value=1.1e-08  Score=82.21  Aligned_cols=227  Identities=9%  Similarity=0.076  Sum_probs=141.4

Q ss_pred             CcccCCCcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEEE
Q 018293            1 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW   80 (358)
Q Consensus         1 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw   80 (358)
                      +++.|+|+++++....+     +|+.++....    ....  ...+..+.++       +|+++|+++++...++.+.+|
T Consensus        33 iAv~pdG~l~vt~~~~~-----~I~~i~p~g~----~~~~--~~~~~~~~gl-------a~~~dG~l~v~~~~~~~~~~~   94 (302)
T d2p4oa1          33 LASAPDGTIFVTNHEVG-----EIVSITPDGN----QQIH--ATVEGKVSGL-------AFTSNGDLVATGWNADSIPVV   94 (302)
T ss_dssp             EEECTTSCEEEEETTTT-----EEEEECTTCC----EEEE--EECSSEEEEE-------EECTTSCEEEEEECTTSCEEE
T ss_pred             EEECCCCCEEEEeCCCC-----EEEEEeCCCC----EEEE--EcCCCCcceE-------EEcCCCCeEEEecCCceEEEE
Confidence            46899999988876665     7888876542    1111  1223334444       458999999998888888888


Q ss_pred             EcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeee
Q 018293           81 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  160 (358)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  160 (358)
                      +...........                        ...........+.+.++ ++++++-+.++.+..+|...+.....
T Consensus        95 ~~~~~~~~~~~~------------------------~~~~~~~~~n~i~~~~~-g~~~v~~~~~~~i~~~~~~~~~~~~~  149 (302)
T d2p4oa1          95 SLVKSDGTVETL------------------------LTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIW  149 (302)
T ss_dssp             EEECTTSCEEEE------------------------EECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             Eecccccceeec------------------------cccCCccccceeEEccC-CCEEeeccccccceeeeccCCcceeE
Confidence            876432211100                        00123456789999999 66888878888898888877643221


Q ss_pred             ec----------ccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc--eeeecCCeeeEEEcCCCCCeEEEEe
Q 018293          161 LE----------HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSL  228 (358)
Q Consensus       161 ~~----------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~  228 (358)
                      ..          ........+.+..  ..++++.+..+.|..++.........  ..........+++++++ +++++..
T Consensus       150 ~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG-~l~va~~  226 (302)
T d2p4oa1         150 LEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG-NLYGATH  226 (302)
T ss_dssp             EECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC-CEEEECB
T ss_pred             ecCCccceeeccCcccccccccccC--CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCC-CEEEEEc
Confidence            11          1112345566543  35777778888999888876543321  22334557789999965 5777777


Q ss_pred             cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEe---cCCCCcEEEEEeCC
Q 018293          229 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY---NPLVPNLLATGSTD  282 (358)
Q Consensus       229 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~---~~~~~~~l~~~~~d  282 (358)
                      .++.|..++.....        ..+......-...++++|   .+|+ +.|+.++..
T Consensus       227 ~~~~V~~i~p~G~~--------~~~~~~~~~~~~pt~vafg~~~~D~-~~Lyvtt~~  274 (302)
T d2p4oa1         227 IYNSVVRIAPDRST--------TIIAQAEQGVIGSTAVAFGQTEGDC-TAIYVVTNG  274 (302)
T ss_dssp             TTCCEEEECTTCCE--------EEEECGGGTCTTEEEEEECCSTTTT-TEEEEEECT
T ss_pred             CCCcEEEECCCCCE--------EEEEecCCCCCCceEEEEcCCCCCC-CEEEEECCC
Confidence            88889888765320        111222223345789999   5666 566555443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.13  E-value=2.3e-08  Score=80.60  Aligned_cols=247  Identities=12%  Similarity=0.120  Sum_probs=142.6

Q ss_pred             cccCCCcEEEEEEecC--CCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeEEE
Q 018293            2 TINPNDAVIVCARNED--DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI   79 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v   79 (358)
                      ++.|+|++.++.....  +....+++.|+...+..  .........     .....|..+.|+++++.|+++...+.|..
T Consensus        24 a~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~--~~~~~~~~~-----~~~g~P~Gl~~~~dg~~l~vad~~~~i~~   96 (314)
T d1pjxa_          24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK--TVICKPEVN-----GYGGIPAGCQCDRDANQLFVADMRLGLLV   96 (314)
T ss_dssp             EECTTSCEEEEETTCEETTEECCEEEEECTTTCCE--EEEECCEET-----TEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             EEeCCCCEEEEECccccccccCCEEEEEECCCCcE--EEEECCccc-----cCCCcceeEEEeCCCCEEEEEECCCeEEE
Confidence            4788999888752211  01112677887765411  111111110     11112334456899988877776677888


Q ss_pred             EEcccccCcCceeecCCcccccccccccCCceeccccccCCC-cccEEEEecCCCCCcEEEEEEc---------------
Q 018293           80 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-TDSVLGLAWNKEFRNILASASA---------------  143 (358)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~---------------  143 (358)
                      .+.+.......                        .....+. -...+.+++.++ +.+.++-..               
T Consensus        97 ~~~~g~~~~~~------------------------~~~~~g~~~~~pndl~~d~~-G~lyvtd~~~~~~~~~~~~~~~~~  151 (314)
T d1pjxa_          97 VQTDGTFEEIA------------------------KKDSEGRRMQGCNDCAFDYE-GNLWITAPAGEVAPADYTRSMQEK  151 (314)
T ss_dssp             EETTSCEEECC------------------------SBCTTSCBCBCCCEEEECTT-SCEEEEECBCBCTTSCCCBTTSSS
T ss_pred             EeCCCcEEEEE------------------------eccccccccCCCcEEEECCC-CCEEEecCccCcccccccceeccC
Confidence            88754221110                        0000111 123577889999 456655322               


Q ss_pred             CCeEEEEECCCCceeeeecccccceeeEEEcCCCC----cEEEEEeCCCcEEEEEcccCCCccce---ee----ecCCee
Q 018293          144 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP----QILLSGSFDRSVVMKDARISTHSGFK---WA----VAADVE  212 (358)
Q Consensus       144 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~---~~----~~~~i~  212 (358)
                      +|.|..++. .++...... .-...+.++|+|++.    .++++-+..+.|..||+.........   ..    ......
T Consensus       152 ~G~v~~~~~-dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         152 FGSIYCFTT-DGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             CEEEEEECT-TSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             CceEEEEee-cCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence            233444443 233333222 233456889988763    24555567888999988654332211   11    112356


Q ss_pred             eEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 018293          213 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  292 (358)
Q Consensus       213 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~  292 (358)
                      .+++..+ ++++++....+.|.+||...+         .....+.......++++|.|++..++++.+.+|.|..+++..
T Consensus       230 GiavD~~-GnlyVa~~~~g~I~~~dp~~g---------~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         230 GMDFDED-NNLLVANWGSSHIEVFGPDGG---------QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEBTT-CCEEEEEETTTEEEEECTTCB---------SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             eeEEecC-CcEEEEEcCCCEEEEEeCCCC---------EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            7899985 457777778899999998765         455556555567899999998855777777888888888754

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.12  E-value=8.3e-08  Score=77.51  Aligned_cols=228  Identities=8%  Similarity=-0.001  Sum_probs=137.2

Q ss_pred             cccCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           60 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        60 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      +|.++|+++++-...+.|..|+.++.....                           ...........+++.++ +++++
T Consensus        46 ~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~---------------------------~~~~~~~~p~gla~~~d-G~l~v   97 (319)
T d2dg1a1          46 NFDRQGQLFLLDVFEGNIFKINPETKEIKR---------------------------PFVSHKANPAAIKIHKD-GRLFV   97 (319)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEE---------------------------EEECSSSSEEEEEECTT-SCEEE
T ss_pred             EECCCCCEEEEECCCCEEEEEECCCCeEEE---------------------------EEeCCCCCeeEEEECCC-CCEEE
Confidence            458899988888788888888875432111                           11123346789999999 55666


Q ss_pred             EEEc----CCeEEEEECCCCceeeeecc--cccceeeEEEcCCCCcEEEEEeC------CCcEEEEEcccCCCccceeee
Q 018293          140 SASA----DKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSF------DRSVVMKDARISTHSGFKWAV  207 (358)
Q Consensus       140 s~~~----dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~  207 (358)
                      +...    .+.+...+............  -......+.+.++| ++.++...      .+.+..++..... .......
T Consensus        98 a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~  175 (319)
T d2dg1a1          98 CYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQN  175 (319)
T ss_dssp             EECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEE
T ss_pred             EecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEecc-ceeecccccccccCcceeEEEecccce-eEEEeec
Confidence            5433    23455555554443333321  12346789999999 66555432      1234444443322 2222233


Q ss_pred             cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCcc-EE---EeecCCceeEEEecCCCCcEEEEEeCCC
Q 018293          208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS-FT---LHAHDKAVCTISYNPLVPNLLATGSTDK  283 (358)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~---~~~~~~~i~~i~~~~~~~~~l~~~~~dg  283 (358)
                      -...+.++|+|++..++++-+..+.|..||+.......     ... ..   ..........+++.++| ++.++....+
T Consensus       176 ~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~-----~~~~~~~~~~~~~~~~PdGl~vD~~G-~l~Va~~~~g  249 (319)
T d2dg1a1         176 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI-----QPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQG  249 (319)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE-----EEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTT
T ss_pred             cceeeeeeeccccceEEEecccCCceEEEEEcCCCcee-----ccccceeeeccCCccceeeeeEcCCC-CEEEEEcCCC
Confidence            34567899999776566777788999999987542100     000 01   11112235679999998 7888888889


Q ss_pred             cEEEEecCCCCceeeEecC----CCCceeEEEEEcCCCCeEEEEE
Q 018293          284 MVKLWDLSNNQPSCIASRN----PKAGAVFSVAFSEDSPFVLAIG  324 (358)
Q Consensus       284 ~i~i~d~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~  324 (358)
                      .|.+||. .++.+....+.    .+...+++++|.+++..++++.
T Consensus       250 ~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         250 RVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             EEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             EEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            9999996 56644333433    2344678999999887555543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=7.3e-07  Score=75.69  Aligned_cols=318  Identities=13%  Similarity=0.134  Sum_probs=156.7

Q ss_pred             cccCCCcEEEEEEecCCC----ceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCCCeE
Q 018293            2 TINPNDAVIVCARNEDDV----SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI   77 (358)
Q Consensus         2 ~~~p~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i   77 (358)
                      .|||+++.++.+......    ..-..++|+...+....+....     .....+.    .+.|||||+.+|-.. ++.|
T Consensus        67 ~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~-----~~~~~l~----~~~wSPDG~~iafv~-~~nl  136 (465)
T d1xfda1          67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-----VSNAKLQ----YAGWGPKGQQLIFIF-ENNI  136 (465)
T ss_dssp             EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT-----CCSCCCS----BCCBCSSTTCEEEEE-TTEE
T ss_pred             EECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCcc-----CCccccc----eeeeccCCceEEEEe-cceE
Confidence            589999999887542210    1236788888765222221111     0000111    245699999998875 6778


Q ss_pred             EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEc-CCe----------
Q 018293           78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQ----------  146 (358)
Q Consensus        78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~----------  146 (358)
                      .+.+..++...+.  ...+.... ...     ......... .-.+.-.++-|||+| +.||.... +..          
T Consensus       137 ~~~~~~~~~~~~l--t~~g~~~~-i~n-----G~~d~vyee-e~~~~~~a~~WSPDg-k~iaf~~~D~s~V~~~~~~~~~  206 (465)
T d1xfda1         137 YYCAHVGKQAIRV--VSTGKEGV-IYN-----GLSDWLYEE-EILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYT  206 (465)
T ss_dssp             EEESSSSSCCEEE--ECCCBTTT-EEE-----EECCHHHHH-TTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCS
T ss_pred             EEEecCCCceEEE--ecccCcce-eec-----cccchhhhh-hhccccceEEECCCC-CeEEEEEecccccceeeccccc
Confidence            8888765433221  11100000 000     000000000 001112467799994 56665532 232          


Q ss_pred             -----------------------EEEEECCCCceeeee------cccccceeeEEEcCCCCcEEEEEe-CC---CcEEEE
Q 018293          147 -----------------------VKIWDVAAGKCNLTL------EHHTDKVQAVAWNHHSPQILLSGS-FD---RSVVMK  193 (358)
Q Consensus       147 -----------------------v~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~-~d---g~i~i~  193 (358)
                                             +.++|++++......      ......+..+.|.+++ ++++... .+   ..+.++
T Consensus       207 ~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~-~~~~~~~nR~q~~~~i~~~  285 (465)
T d1xfda1         207 GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLC  285 (465)
T ss_dssp             SSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEE
T ss_pred             ccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCC-eEEEEEEccccccceEEEE
Confidence                                   344454433221111      1122346778999988 5554433 22   257788


Q ss_pred             EcccCCCccceeee-cCC----eeeEEEcCCCCCeEEE--EecCC--eEEEEEcccCCCCCCCCCCCccEEEeecCCcee
Q 018293          194 DARISTHSGFKWAV-AAD----VESLAWDPHAEHSFVV--SLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC  264 (358)
Q Consensus       194 d~~~~~~~~~~~~~-~~~----i~~~~~~~~~~~~~~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~  264 (358)
                      |..+++........ ...    -....|.+++..+++.  ...+|  .+..+++.......   .......+....-.|.
T Consensus       286 d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~---~~~~~~~LT~G~w~V~  362 (465)
T d1xfda1         286 DATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS---SNDNIQSITSGDWDVT  362 (465)
T ss_dssp             ETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS---SSCCCCBSCCSSSCEE
T ss_pred             cCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccC---CCceeEEeccCCceEE
Confidence            88887655433222 121    2346788877665433  22233  45555443221100   0122223333344455


Q ss_pred             EE-EecCCCCcEEEEEeCCC--cEEEEe--cCCCCc-eeeEecCCCCceeEEEEEcCCCCeEEEEEccC--CeEEEEEcc
Q 018293          265 TI-SYNPLVPNLLATGSTDK--MVKLWD--LSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTL  336 (358)
Q Consensus       265 ~i-~~~~~~~~~l~~~~~dg--~i~i~d--~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vw~~~  336 (358)
                      .+ .|.++++.+.+++..++  .-.+|.  +..... .++...........++.|||++++++.+++.-  -.+.+++..
T Consensus       363 ~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~  442 (465)
T d1xfda1         363 KILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTT  442 (465)
T ss_dssp             EEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETT
T ss_pred             EEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECC
Confidence            54 58887755556665543  223444  443321 12211122344577899999999866555432  357888888


Q ss_pred             CCCcccc
Q 018293          337 SDAGISN  343 (358)
Q Consensus       337 ~~~~~~~  343 (358)
                      +++.+..
T Consensus       443 ~~~~~~~  449 (465)
T d1xfda1         443 DKKKMFD  449 (465)
T ss_dssp             TCCEEEE
T ss_pred             CCCEEEE
Confidence            7776654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.94  E-value=2.7e-07  Score=72.93  Aligned_cols=158  Identities=11%  Similarity=0.095  Sum_probs=107.3

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee--cccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccC
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  198 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  198 (358)
                      .......+++.++ +.++++....+.+.+++. +++.+..+  ..+......+++.+++ +++++....+.|.+||....
T Consensus       112 ~~~~p~~~avd~~-G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~G~  188 (279)
T d1q7fa_         112 ILQHPRGVTVDNK-GRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQ  188 (279)
T ss_dssp             TCSCEEEEEECTT-SCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCC
T ss_pred             cccccceeccccC-CcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccce-eEEeeeccccceeeeecCCc
Confidence            3456778889988 557777777788888884 45666655  3345667889999988 78888888899999997543


Q ss_pred             CCcccee--eecCCeeeEEEcCCCCCeEEEEe-cCCeEEEEEcccCCCCCCCCCCCccEEEeec--CCceeEEEecCCCC
Q 018293          199 THSGFKW--AVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVP  273 (358)
Q Consensus       199 ~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~  273 (358)
                      . .....  ........+++++++ +++++-. .++.|.+|+.. +         ..+..+...  ......+++.|+| 
T Consensus       189 ~-~~~~g~~g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f~~~-G---------~~~~~~~~~~~~~~p~~vav~~dG-  255 (279)
T d1q7fa_         189 Y-LRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQD-G---------QLISALESKVKHAQCFDVALMDDG-  255 (279)
T ss_dssp             E-EEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTT-S---------CEEEEEEESSCCSCEEEEEEETTT-
T ss_pred             e-eeeecccccccCCcccccccCC-eEEEEECCCCcEEEEECCC-C---------CEEEEEeCCCCCCCEeEEEEeCCC-
Confidence            2 11111  123347889999965 4666644 34579999853 3         444444322  3357889999988 


Q ss_pred             cEEEEEeCCCcEEEEecCCCCc
Q 018293          274 NLLATGSTDKMVKLWDLSNNQP  295 (358)
Q Consensus       274 ~~l~~~~~dg~i~i~d~~~~~~  295 (358)
                      .++ +...++.|++|......|
T Consensus       256 ~l~-V~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         256 SVV-LASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EEE-EEETTTEEEEEECSCCCC
T ss_pred             cEE-EEeCCCeEEEEEeeeecC
Confidence            554 456789999999877653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.91  E-value=1.7e-06  Score=68.71  Aligned_cols=194  Identities=11%  Similarity=0.059  Sum_probs=122.3

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeec--c--cccceeeEEEcCCCCcEEEEEeC----CCcEEEEE
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE--H--HTDKVQAVAWNHHSPQILLSGSF----DRSVVMKD  194 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~--~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d  194 (358)
                      ..+.++++.++ +.+++ ++.+ .+.++|..+++......  .  ....++.+.+.|+| ++.++...    .+.-.+|.
T Consensus        59 ~~~~~i~~~~d-g~l~v-a~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~~  134 (295)
T d2ghsa1          59 FMGSALAKISD-SKQLI-ASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYH  134 (295)
T ss_dssp             SCEEEEEEEET-TEEEE-EETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEE
T ss_pred             CCcEEEEEecC-CCEEE-EEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCC-CEEEEeccccccccceeEee
Confidence            46788998888 54554 4554 58899999886543322  1  12357889999999 65555432    23445666


Q ss_pred             cccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCc
Q 018293          195 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  274 (358)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  274 (358)
                      +..++... ....-...+.++|++++..++++-+..+.|..|++.......... ...........+....+++..+| +
T Consensus       135 ~~~g~~~~-~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~-~~~~~~~~~~~g~pdG~~vD~~G-n  211 (295)
T d2ghsa1         135 VAKGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK-AEVFIDSTGIKGGMDGSVCDAEG-H  211 (295)
T ss_dssp             EETTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC-CEEEEECTTSSSEEEEEEECTTS-C
T ss_pred             ecCCcEEE-EeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccc-eEEEeccCcccccccceEEcCCC-C
Confidence            65554333 233344567899999777677777788999999885432111000 01111222334567889999988 7


Q ss_pred             EEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEc-CCCCeEEEEEcc
Q 018293          275 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGGS  326 (358)
Q Consensus       275 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~  326 (358)
                      +.++.-..+.|..||. .++......+.  ...+++++|- ++.+.+++|...
T Consensus       212 lWva~~~~g~V~~~dp-~G~~~~~i~lP--~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         212 IWNARWGEGAVDRYDT-DGNHIARYEVP--GKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEEEEETTTEEEEECT-TCCEEEEEECS--CSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EEeeeeCCCceEEecC-CCcEeeEecCC--CCceEEEEEeCCCCCEEEEEECC
Confidence            7777667788999996 45543443333  3468999996 677777787654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.90  E-value=1.1e-06  Score=70.78  Aligned_cols=207  Identities=9%  Similarity=0.071  Sum_probs=129.4

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCC----CcEEEEEcccC
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD----RSVVMKDARIS  198 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~  198 (358)
                      ..+..++|.++ +++.++-..++.|..|+.++++....+.........+++.++| +++++...+    +.+...+....
T Consensus        40 ~~lEG~~~D~~-G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          40 LQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cCcEeCEECCC-CCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCc
Confidence            34578999999 5677777788999999988776655555555678899999998 766665432    33444444443


Q ss_pred             CCcccee--eecCCeeeEEEcCCCCCeEEEEec------CCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecC
Q 018293          199 THSGFKW--AVAADVESLAWDPHAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  270 (358)
Q Consensus       199 ~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  270 (358)
                      .......  ........+++.+++ +++++...      .+.+..++...          ..+..+...-...+.++|+|
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg----------~~~~~~~~~~~~pnGia~s~  186 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDF----------RTVTPIIQNISVANGIALST  186 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTS----------CCEEEEEEEESSEEEEEECT
T ss_pred             eeeeeccCCCcccCCcceeEEecc-ceeecccccccccCcceeEEEeccc----------ceeEEEeeccceeeeeeecc
Confidence            3322111  112346788999965 45444321      12344444332          22333333334468899999


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCCCcee------eEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccc
Q 018293          271 LVPNLLATGSTDKMVKLWDLSNNQPSC------IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       271 ~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      ++..+.++-+..+.|..|++.......      .............|++.++|+ ++++....+.|.+|+- .|+.+.+.
T Consensus       187 dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p-~G~~l~~i  264 (319)
T d2dg1a1         187 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNK-RGYPIGQI  264 (319)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEECC-CCcEEEEE
Confidence            984455666778899999986532111      111112223456799999998 6887788899999995 67766543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=1.1e-05  Score=62.64  Aligned_cols=211  Identities=7%  Similarity=0.024  Sum_probs=132.3

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCC
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  200 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  200 (358)
                      +...+.+++|.+..+.++.+-..++.|...++........+......+.++++..-++.+..+-...+.|.+.++.....
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence            44568889998874545555456688998888765544444433456788999876645555666678999999876554


Q ss_pred             ccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEE--EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEE
Q 018293          201 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF--DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT  278 (358)
Q Consensus       201 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~  278 (358)
                      ..........+..++++|..+.++.+-...+..+++  ++...         .........-....++++.+.++.+..+
T Consensus       114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~---------~~~~i~~~~~~~P~glaiD~~~~~lYw~  184 (263)
T d1npea_         114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT---------NRRILAQDNLGLPNGLTFDAFSSQLCWV  184 (263)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC---------CCEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred             EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC---------CceeeeeecccccceEEEeecCcEEEEE
Confidence            332222235688999999766555553332333344  44332         2222222223456899999877445555


Q ss_pred             EeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          279 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       279 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      -...+.|...++.......+..  +... ..++++.  +.+++.+-...+.|...|..+++.+....
T Consensus       185 d~~~~~I~~~~~~g~~~~~v~~--~~~~-P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         185 DAGTHRAECLNPAQPGRRKVLE--GLQY-PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             ETTTTEEEEEETTEEEEEEEEE--CCCS-EEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             eCCCCEEEEEECCCCCeEEEEC--CCCC-cEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            5667889999997765433332  2222 3567775  34477777778899999998888765443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.71  E-value=7.2e-06  Score=64.27  Aligned_cols=229  Identities=8%  Similarity=-0.035  Sum_probs=115.7

Q ss_pred             cCC--CceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEE
Q 018293           62 REK--GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  139 (358)
Q Consensus        62 s~~--~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  139 (358)
                      |||  |+++|-.+ +|.|.+.|+.+++..                            .+..+.+.+...+|||||..+.+
T Consensus         7 sPdi~G~~v~f~~-~~dl~~~d~~~g~~~----------------------------~Lt~~~~~~~~p~~SPDG~~iaf   57 (281)
T d1k32a2           7 NPDIHGDRIIFVC-CDDLWEHDLKSGSTR----------------------------KIVSNLGVINNARFFPDGRKIAI   57 (281)
T ss_dssp             EEEEETTEEEEEE-TTEEEEEETTTCCEE----------------------------EEECSSSEEEEEEECTTSSEEEE
T ss_pred             CCCCCCCEEEEEe-CCcEEEEECCCCCEE----------------------------EEecCCCcccCEEECCCCCEEEE
Confidence            788  99888664 567888888754321                            22346677889999999554444


Q ss_pred             EEEcCC-----eEEEEECCCCceeeeecc------cccceeeEEEcCCCCcEEEEEeCC------CcEEEEEcccCCCcc
Q 018293          140 SASADK-----QVKIWDVAAGKCNLTLEH------HTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHSG  202 (358)
Q Consensus       140 s~~~dg-----~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~  202 (358)
                      +...++     .|.+++..+++..+....      .........|+|++ +.++.....      ..+...+....... 
T Consensus        58 ~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-  135 (281)
T d1k32a2          58 RVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDG-NLIISTDAMQPFSSMTCLYRVENDGINFV-  135 (281)
T ss_dssp             EEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTC-CEEEEECTTSSSTTCCEEEEEEGGGTEEE-
T ss_pred             EEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCC-CEEEEEEccCCCccceeeeeecCCCceeE-
Confidence            444333     477778777765433211      12345678899999 656554322      12333333322211 


Q ss_pred             ceeeecCCeeeEEEcCCCCCeEEEEecCC-----------eEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCC
Q 018293          203 FKWAVAADVESLAWDPHAEHSFVVSLEDG-----------TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  271 (358)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  271 (358)
                        .......... +.+++...++......           .........          .................+.++
T Consensus       136 --~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~  202 (281)
T d1k32a2         136 --PLNLGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS----------GAFKKIVDMSTHVSSPVIVGH  202 (281)
T ss_dssp             --ECCSCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET----------TEEEEEECCSSCCEEEEEETT
T ss_pred             --EecCCcccee-eecCCCeEEEeeccccceeeeeccCCcceeeeeccc----------cceeeccCCccccceeeeecc
Confidence              1111112222 2222332222221111           011111111          111122222333444555553


Q ss_pred             CCcEEEEEeCCC--cEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          272 VPNLLATGSTDK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       272 ~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                        ..+.....++  .|.++|+.+.+...+..  .....+  ..|+|||+.++.  ..++.|+++|+.+++.-.
T Consensus       203 --~~~~~~~~~~~~~l~~~d~~g~~~~~lt~--~~~~~~--~~~SpDG~~I~f--~~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         203 --RIYFITDIDGFGQIYSTDLDGKDLRKHTS--FTDYYP--RHLNTDGRRILF--SKGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             --EEEEEECTTSSCEEEEEETTSCSCEECCC--CCSSCE--EEEEESSSCEEE--EETTEEEEECTTTCCEEE
T ss_pred             --ccceecccccccceEEEeCCCCceEEeec--CCCccc--ccCcCCCCEEEE--EeCCEEEEEECCCCCEEE
Confidence              3344433333  47788888776433221  112222  468999997554  346789999998877543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.3e-05  Score=67.73  Aligned_cols=239  Identities=9%  Similarity=0.003  Sum_probs=123.7

Q ss_pred             cccCCCceEEec---------CCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEec
Q 018293           60 KDREKGNFMAVG---------SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW  130 (358)
Q Consensus        60 ~~s~~~~~l~~g---------~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  130 (358)
                      .||||+++++..         +..+.+.+||+.++.....                         .........+....|
T Consensus        67 ~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l-------------------------~~~~~~~~~l~~~~w  121 (465)
T d1xfda1          67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL-------------------------DPPEVSNAKLQYAGW  121 (465)
T ss_dssp             EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC-------------------------CCTTCCSCCCSBCCB
T ss_pred             EECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeec-------------------------cCccCCccccceeee
Confidence            359999988765         3457888999876443210                         111123345667889


Q ss_pred             CCCCCcEEEEEEcCCeEEEEECCCCceeeeec-ccccc-----------------eeeEEEcCCCCcEEEEEe-CCCc--
Q 018293          131 NKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDK-----------------VQAVAWNHHSPQILLSGS-FDRS--  189 (358)
Q Consensus       131 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~-----------------v~~~~~~~~~~~~l~~~~-~dg~--  189 (358)
                      ||+|. .+|-. .++.|.+.+..++..++... +....                 -.++.|+||| +.|+... .+..  
T Consensus       122 SPDG~-~iafv-~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDg-k~iaf~~~D~s~V~  198 (465)
T d1xfda1         122 GPKGQ-QLIFI-FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVP  198 (465)
T ss_dssp             CSSTT-CEEEE-ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSC
T ss_pred             ccCCc-eEEEE-ecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCC-CeEEEEEecccccc
Confidence            99955 55544 36788888887765544332 11111                 1467899999 6666553 2332  


Q ss_pred             -------------------------------EEEEEcccCCCccceee------ecCCeeeEEEcCCCCCeEEEE-ecC-
Q 018293          190 -------------------------------VVMKDARISTHSGFKWA------VAADVESLAWDPHAEHSFVVS-LED-  230 (358)
Q Consensus       190 -------------------------------i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~-~~d-  230 (358)
                                                     +.++|+..+........      ....+..+.|.|++. +++.. ..+ 
T Consensus       199 ~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~-~~~~~~nR~q  277 (465)
T d1xfda1         199 IMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQ  277 (465)
T ss_dssp             EEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTS
T ss_pred             eeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCe-EEEEEEcccc
Confidence                                           33444433322110000      111256788998654 44443 222 


Q ss_pred             --CeEEEEEcccCCCCCCCCCCCccEEEee-cCCce----eEEEecCCCCcEEEE-Ee-CCC--cEEEEecCCCC----c
Q 018293          231 --GTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAV----CTISYNPLVPNLLAT-GS-TDK--MVKLWDLSNNQ----P  295 (358)
Q Consensus       231 --g~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i----~~i~~~~~~~~~l~~-~~-~dg--~i~i~d~~~~~----~  295 (358)
                        ..+.++|..++         ........ ....|    ....|+|+|..+++. .+ .+|  .++.+++....    .
T Consensus       278 ~~~~i~~~d~~tg---------~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~  348 (465)
T d1xfda1         278 NVSILTLCDATTG---------VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN  348 (465)
T ss_dssp             CEEEEEEEETTTC---------CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS
T ss_pred             ccceEEEEcCCCC---------cEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCC
Confidence              25777888776         22222222 22222    346788988554332 22 233  34444432111    0


Q ss_pred             eeeEecCCCCceeEEE-EEcCCCCeEEEEEccCC--eEEEEEcc
Q 018293          296 SCIASRNPKAGAVFSV-AFSEDSPFVLAIGGSKG--KLEIWDTL  336 (358)
Q Consensus       296 ~~~~~~~~~~~~v~~~-~~~~~~~~~l~~~~~dg--~i~vw~~~  336 (358)
                      .....+....-.|..+ .|+++++.++.++..++  .-++|.+.
T Consensus       349 ~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~  392 (465)
T d1xfda1         349 DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN  392 (465)
T ss_dssp             CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred             ceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEE
Confidence            0122333333345554 68898887777776543  33455443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.64  E-value=4.7e-05  Score=60.13  Aligned_cols=182  Identities=9%  Similarity=0.065  Sum_probs=112.4

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      .++|+++++. .+ -|.++|..+++.......                       ........++.+.+.|+| .+.++.
T Consensus        67 ~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~-----------------------~~~~~~~~~nd~~vd~~G-~iw~~~  120 (295)
T d2ghsa1          67 ISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL-----------------------ESDLPGNRSNDGRMHPSG-ALWIGT  120 (295)
T ss_dssp             EETTEEEEEE-TT-EEEEEETTTCCEEEEECS-----------------------STTCTTEEEEEEEECTTS-CEEEEE
T ss_pred             ecCCCEEEEE-eC-ccEEeecccceeeEEeee-----------------------ecCCCcccceeeEECCCC-CEEEEe
Confidence            5788777764 34 577888876442211000                       001123468899999995 455544


Q ss_pred             EcC----CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc-----ccee---eecC
Q 018293          142 SAD----KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-----GFKW---AVAA  209 (358)
Q Consensus       142 ~~d----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~---~~~~  209 (358)
                      ..+    +.-.+|.+..++....... -.....+.|++++..++++-+..+.|..+++......     ....   ....
T Consensus       121 ~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g  199 (295)
T d2ghsa1         121 MGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG  199 (295)
T ss_dssp             EETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS
T ss_pred             ccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccc
Confidence            322    3456777767765544443 3346789999999556677777889999987543211     1111   1234


Q ss_pred             CeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEec-CCCCcEEEEEeC
Q 018293          210 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN-PLVPNLLATGST  281 (358)
Q Consensus       210 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~~l~~~~~  281 (358)
                      ....++++.++ ++.++.-..+.|..||.. +         +.+..+......+++++|- |+...+++|...
T Consensus       200 ~pdG~~vD~~G-nlWva~~~~g~V~~~dp~-G---------~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         200 GMDGSVCDAEG-HIWNARWGEGAVDRYDTD-G---------NHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEEEEEECTTS-CEEEEEETTTEEEEECTT-C---------CEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             cccceEEcCCC-CEEeeeeCCCceEEecCC-C---------cEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            57788898854 577776678899999964 3         5566665555678999996 565456666544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=6e-05  Score=58.46  Aligned_cols=216  Identities=12%  Similarity=0.055  Sum_probs=132.6

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCc----eeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 018293          121 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  196 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  196 (358)
                      ....+.+++|.+..+.+..+=..++.|.-.++....    ....+......+..+++.+.+.++..+-...+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            334577899988745444444456667766664321    1122222334567888887664666666677889999988


Q ss_pred             cCCCccceeeecCCeeeEEEcCCCCCeEEEEe-cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcE
Q 018293          197 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  275 (358)
Q Consensus       197 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  275 (358)
                      .................++++|..+.++++.. ..+.|.-.++...         .........-...+++++.+.++++
T Consensus       108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs---------~~~~l~~~~~~~p~gl~iD~~~~~l  178 (266)
T d1ijqa1         108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------DIYSLVTENIQWPNGITLDLLSGRL  178 (266)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------CEEEEECSSCSCEEEEEEETTTTEE
T ss_pred             CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC---------ceecccccccceeeEEEeeccccEE
Confidence            66544433334456889999996665555532 3345666666533         2222222233556899999877456


Q ss_pred             EEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccccc
Q 018293          276 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  347 (358)
Q Consensus       276 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  347 (358)
                      ..+-...+.|...++.......+............+++..  .+++.+-..++.|...+..+++........
T Consensus       179 Yw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~--~~ly~td~~~~~I~~~~~~~g~~~~~~~~~  248 (266)
T d1ijqa1         179 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLLAEN  248 (266)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETTTCCCCEEEECS
T ss_pred             EEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC--CEEEEEECCCCeEEEEECCCCcceEEEEcC
Confidence            6665667889999997765444444333334456677763  347777778889999998888766554443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.46  E-value=8.5e-06  Score=63.85  Aligned_cols=234  Identities=9%  Similarity=0.026  Sum_probs=109.5

Q ss_pred             cccCC--CcEEEEEEecCCCceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecC----CCC
Q 018293            2 TINPN--DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS----MEP   75 (358)
Q Consensus         2 ~~~p~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~----~dg   75 (358)
                      .++|+  |+.++.. .++     .||+++...+....+..+.     ....       .++|||||+.||...    .+.
T Consensus         5 ~~sPdi~G~~v~f~-~~~-----dl~~~d~~~g~~~~Lt~~~-----~~~~-------~p~~SPDG~~iaf~~~~~~~~~   66 (281)
T d1k32a2           5 LLNPDIHGDRIIFV-CCD-----DLWEHDLKSGSTRKIVSNL-----GVIN-------NARFFPDGRKIAIRVMRGSSLN   66 (281)
T ss_dssp             CEEEEEETTEEEEE-ETT-----EEEEEETTTCCEEEEECSS-----SEEE-------EEEECTTSSEEEEEEEESTTCC
T ss_pred             ccCCCCCCCEEEEE-eCC-----cEEEEECCCCCEEEEecCC-----Cccc-------CEEECCCCCEEEEEEeeCCCCC
Confidence            47899  9998887 455     7999999876322222111     1112       334599999998543    222


Q ss_pred             --eEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC------CeE
Q 018293           76 --AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD------KQV  147 (358)
Q Consensus        76 --~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------g~v  147 (358)
                        .|.+++..+++..+-. ..                    ...............|+|++ +.|+.....      ..+
T Consensus        67 ~~~i~~~~~~~g~~~~lt-~~--------------------~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~  124 (281)
T d1k32a2          67 TADLYFYNGENGEIKRIT-YF--------------------SGKSTGRRMFTDVAGFDPDG-NLIISTDAMQPFSSMTCL  124 (281)
T ss_dssp             EEEEEEEETTTTEEEECC-CC--------------------CEEEETTEECSEEEEECTTC-CEEEEECTTSSSTTCCEE
T ss_pred             ceEEEEEEecCCceEEee-ec--------------------CCCccCccccccccccCCCC-CEEEEEEccCCCccceee
Confidence              3555565543322100 00                    00001123345678899995 455543221      234


Q ss_pred             EEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCc-----------EEEEEcccCCCccceeeecCCeeeEEE
Q 018293          148 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS-----------VVMKDARISTHSGFKWAVAADVESLAW  216 (358)
Q Consensus       148 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----------i~i~d~~~~~~~~~~~~~~~~i~~~~~  216 (358)
                      ...+...+......   ...... .+.+++...++.......           .......... ...............+
T Consensus       125 ~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  199 (281)
T d1k32a2         125 YRVENDGINFVPLN---LGPATH-ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA-FKKIVDMSTHVSSPVI  199 (281)
T ss_dssp             EEEEGGGTEEEECC---SCSCSE-EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE-EEEEECCSSCCEEEEE
T ss_pred             eeecCCCceeEEec---CCccce-eeecCCCeEEEeeccccceeeeeccCCcceeeeeccccc-eeeccCCccccceeee
Confidence            45554444332211   111222 333444233333222110           1111111111 1111112223334444


Q ss_pred             cCCCCCeEEEEecC--CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 018293          217 DPHAEHSFVVSLED--GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  294 (358)
Q Consensus       217 ~~~~~~~~~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~  294 (358)
                      .++  .++.....+  ..|.++|+....          ...+..+. ......|+|+|..+++  ..++.|+++|+.+++
T Consensus       200 ~~~--~~~~~~~~~~~~~l~~~d~~g~~----------~~~lt~~~-~~~~~~~SpDG~~I~f--~~~~~l~~~d~~~g~  264 (281)
T d1k32a2         200 VGH--RIYFITDIDGFGQIYSTDLDGKD----------LRKHTSFT-DYYPRHLNTDGRRILF--SKGGSIYIFNPDTEK  264 (281)
T ss_dssp             ETT--EEEEEECTTSSCEEEEEETTSCS----------CEECCCCC-SSCEEEEEESSSCEEE--EETTEEEEECTTTCC
T ss_pred             ecc--ccceecccccccceEEEeCCCCc----------eEEeecCC-CcccccCcCCCCEEEE--EeCCEEEEEECCCCC
Confidence            442  234444333  357777776542          22232222 2233468999955444  346789999999887


Q ss_pred             c
Q 018293          295 P  295 (358)
Q Consensus       295 ~  295 (358)
                      .
T Consensus       265 ~  265 (281)
T d1k32a2         265 I  265 (281)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.19  E-value=0.0009  Score=54.65  Aligned_cols=279  Identities=8%  Similarity=0.017  Sum_probs=129.0

Q ss_pred             CCCcEEEEEEecCC------CceEEEEEEeccCCCCCceEeeceeecCCcccceeeecCCccccCCCceEEecCCC-CeE
Q 018293            5 PNDAVIVCARNEDD------VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-PAI   77 (358)
Q Consensus         5 p~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g~i   77 (358)
                      .+|++++.|....+      ...-.+.+||...+.-..+..   ...+....|..     ..+.++|++++.|+.+ ..+
T Consensus        29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~---~~~~~~~~~~~-----~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV---TVTKHDMFCPG-----ISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE---EECSCCCSSCE-----EEECTTSCEEEECSSSTTCE
T ss_pred             eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCC---CCCCcccceeE-----EEEecCCcEEEeecCCCcce
Confidence            47788888865321      123357788887652222111   11111112221     1236899999998765 589


Q ss_pred             EEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEEEcC------CeEEEEE
Q 018293           78 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD------KQVKIWD  151 (358)
Q Consensus        78 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------g~v~iwd  151 (358)
                      .+||..+..-..                         ...+... ..-...+..++ +++++.|+.+      ..+.+||
T Consensus       101 ~~yd~~~~~w~~-------------------------~~~~~~~-r~~~~~~~~~d-G~v~v~GG~~~~~~~~~~v~~yd  153 (387)
T d1k3ia3         101 SLYDSSSDSWIP-------------------------GPDMQVA-RGYQSSATMSD-GRVFTIGGSWSGGVFEKNGEVYS  153 (387)
T ss_dssp             EEEEGGGTEEEE-------------------------CCCCSSC-CSSCEEEECTT-SCEEEECCCCCSSSCCCCEEEEE
T ss_pred             eEecCccCcccc-------------------------ccccccc-ccccceeeecC-Cceeeeccccccccccceeeeec
Confidence            999987532211                         0011111 11123445566 5577777643      3689999


Q ss_pred             CCCCceeee--ec-------cccc-----ceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee------ec--C
Q 018293          152 VAAGKCNLT--LE-------HHTD-----KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA------VA--A  209 (358)
Q Consensus       152 ~~~~~~~~~--~~-------~~~~-----~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~--~  209 (358)
                      ..+.+-...  ..       .+..     .-..+...+++ ..++.+..++.+.+++..+.........      ..  .
T Consensus       154 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (387)
T d1k3ia3         154 PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKG-SVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAM  232 (387)
T ss_dssp             TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGG-CEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCB
T ss_pred             CCCCceeecCCCcccccccccccceeeccceeEEEEeCCC-CEEEecCcCCcEEecCcccCcEeeccccccCcccCcccc
Confidence            987643211  00       0000     00111222344 5566666666666666654432111000      00  0


Q ss_pred             CeeeEEEcCCCCCeEEEEecCC--------eEEEEEcccCCCCCCCCCCCccEEEe--ecCCceeEEEecCCCCcEEEEE
Q 018293          210 DVESLAWDPHAEHSFVVSLEDG--------TIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATG  279 (358)
Q Consensus       210 ~i~~~~~~~~~~~~~~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~l~~~  279 (358)
                      .-.++.+...++++++.|+...        ...+.++.......     .......  .....-.+....+++ ++++.|
T Consensus       233 ~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~r~~~~~~~~~dg-~i~v~G  306 (387)
T d1k3ia3         233 CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP-----NTVFASNGLYFARTFHTSVVLPDG-STFITG  306 (387)
T ss_dssp             TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC-----EEEECTTCCSSCCBSCEEEECTTS-CEEEEC
T ss_pred             cccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCC-----CceeeccccccccccceeeeccCC-eEEEEC
Confidence            1122333333344556554321        23333333221100     0000000  011122345556777 788887


Q ss_pred             eCC-----------CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEcc
Q 018293          280 STD-----------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS  326 (358)
Q Consensus       280 ~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  326 (358)
                      +.+           ..+.+||..+.+...+.........-....+.+||+ +|+.|+.
T Consensus       307 G~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~-v~v~GG~  363 (387)
T d1k3ia3         307 GQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGR-VFNGGGG  363 (387)
T ss_dssp             CBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSC-EEEEECC
T ss_pred             CcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCE-EEEEeCC
Confidence            753           147889988876433222211111112344679999 6777773

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=0.00065  Score=52.29  Aligned_cols=184  Identities=10%  Similarity=0.045  Sum_probs=113.4

Q ss_pred             CeEEEEECCCCce-----eeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCC
Q 018293          145 KQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  219 (358)
Q Consensus       145 g~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  219 (358)
                      +.|+-.+++....     ...+..+...+.+++|.+..+.++.+-..++.|+..++............-..+..++++.-
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~   89 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEecc
Confidence            4677777754321     12233344567789999877455555556788888888765543322222356788999876


Q ss_pred             CCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCc--EEEEecCCCCcee
Q 018293          220 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--VKLWDLSNNQPSC  297 (358)
Q Consensus       220 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~  297 (358)
                      ++++.++-...+.|.+.++...         ...............+++.|..+.++.+-...+.  |.--++.......
T Consensus        90 ~~~lY~~d~~~~~I~~~~~dg~---------~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~  160 (263)
T d1npea_          90 GRTIFWTDSQLDRIEVAKMDGT---------QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI  160 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTSC---------SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred             CCeEEEeccCCCEEEEEecCCc---------eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee
Confidence            6666667777889999998754         2222223333567899999977444444333233  4444555444222


Q ss_pred             eEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCC
Q 018293          298 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  339 (358)
Q Consensus       298 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~  339 (358)
                      +  ....-.....+++.+.++.++.+-...+.|...++....
T Consensus       161 i--~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~  200 (263)
T d1npea_         161 L--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (263)
T ss_dssp             E--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             e--eeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC
Confidence            2  222334567899998877666766677889988886543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.10  E-value=0.00093  Score=54.04  Aligned_cols=258  Identities=12%  Similarity=0.110  Sum_probs=143.4

Q ss_pred             EEecCCCCeEEEEEcccccCcCceeecCCcccc-------cccc-cccCC-ceecccc------ccCCCcccEEEEecC-
Q 018293           68 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE-------KKKK-KSKKG-KKSSIKY------KKGSHTDSVLGLAWN-  131 (358)
Q Consensus        68 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~-~~~~~~~------~~~~h~~~v~~~~~~-  131 (358)
                      +.+|+..|.|+|+-+.+++.+..+.++...+..       .+.. ..... .......      ...+-..-. .+++. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP-~~S~Td   94 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHV-HMSFTE   94 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCE-EEEEET
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCC-cccccC
Confidence            578999999999999999888777666433221       1110 00000 0000000      001111111 44554 


Q ss_pred             --CCCCcEEEEEEcCCeEEEEECCCCceeeeecc-cccceeeEEEcCCCC-cEEEEEeCC------------------Cc
Q 018293          132 --KEFRNILASASADKQVKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSP-QILLSGSFD------------------RS  189 (358)
Q Consensus       132 --~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~l~~~~~d------------------g~  189 (358)
                        +||+.+++.-..++.|.+-|+++.++.+.+.- ....+..++..++.. .+++..+.+                  +.
T Consensus        95 GtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          95 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             CccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence              36444444555788999999999987654421 334566666654432 455555542                  23


Q ss_pred             EEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecC-C--------------eEEEE------------------
Q 018293          190 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED-G--------------TIKGF------------------  236 (358)
Q Consensus       190 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-g--------------~i~i~------------------  236 (358)
                      +.++|..+.+... ..........+.+++++. ++++.+.+ .              .+.++                  
T Consensus       175 ~t~ID~~tm~V~~-QV~V~g~ld~~~~s~dGK-~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         175 FTAVDADKWEVAW-QVLVSGNLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEETTTTEEEE-EEEESSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEecCCceEEE-EeeeCCChhccccCCCCC-EEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            5567776554433 233455677899999776 44444322 1              13333                  


Q ss_pred             -----EcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCC--------ce--eeEec
Q 018293          237 -----DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--------PS--CIASR  301 (358)
Q Consensus       237 -----d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~--~~~~~  301 (358)
                           |.+....      ......+....+ ...+.++|||..+++++..+.++.|+|++.-.        +.  ...+.
T Consensus       253 gV~VVD~~~~~~------~~v~~yIPVpKs-PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~  325 (459)
T d1fwxa2         253 GVKVVDGRKEAS------SLFTRYIPIANN-PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP  325 (459)
T ss_dssp             TEEEEECSGG--------CSSEEEEEEESS-CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred             CceeecccccCC------cceeEEEecCCC-CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec
Confidence                 3332100      122223333333 46889999995555566679999999996421        11  11111


Q ss_pred             CCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccC
Q 018293          302 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  337 (358)
Q Consensus       302 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~  337 (358)
                      . ..-.-..-+|...|. .+.+---|..|.-|++..
T Consensus       326 e-lglgPLht~fd~~g~-aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         326 E-LGLGPLHTAFDGRGN-AYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             B-CCSCEEEEEECTTSE-EEEEETTTTEEEEEEHHH
T ss_pred             c-cCcCccccccCCCce-EEEEeeccceEEEEecch
Confidence            1 222345678999886 677778999999999853

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=0.0042  Score=47.68  Aligned_cols=182  Identities=12%  Similarity=0.004  Sum_probs=113.0

Q ss_pred             CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc---cc-eeeecCCeeeEEEcCCC
Q 018293          145 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---GF-KWAVAADVESLAWDPHA  220 (358)
Q Consensus       145 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~-~~~~~~~i~~~~~~~~~  220 (358)
                      ..|+..++.+.+....+. ....+.+++|++..+.++.+-...+.|...++......   .. .......+..+++.+.+
T Consensus        10 ~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence            458888887665444344 44567789999887444444445666776666542211   11 11122456778888767


Q ss_pred             CCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEe-CCCcEEEEecCCCCceeeE
Q 018293          221 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQPSCIA  299 (358)
Q Consensus       221 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~  299 (358)
                      +++.++-...+.|.+.++...         ...............++++|..+.++.+.. ..+.|.-.++.......+ 
T Consensus        89 ~~lY~~d~~~~~I~v~~~~g~---------~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l-  158 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-  158 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSS---------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-
T ss_pred             ceEEEEecCCCEEEeEecCCc---------eEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecc-
Confidence            777777777889999998764         333334444556789999986634444432 334576677765543222 


Q ss_pred             ecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCC
Q 018293          300 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       300 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~  338 (358)
                       ....-.....+++.+.+..++.+-...+.|...++...
T Consensus       159 -~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         159 -VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             -ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             -cccccceeeEEEeeccccEEEEecCCcCEEEEEECCCC
Confidence             22233456889999888767777677889999998654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.76  E-value=0.0044  Score=47.36  Aligned_cols=198  Identities=11%  Similarity=0.118  Sum_probs=124.3

Q ss_pred             ecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceee-e
Q 018293          129 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-V  207 (358)
Q Consensus       129 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~  207 (358)
                      -.+|. .+.||.-+ ..++.++|+++.+.+..+. ...+|.-=.|-.+.  .|+..+ +..|+-|+++.......... +
T Consensus        69 IMhP~-~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis~~--~L~lVT-~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          69 IMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EECSS-SSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESSSS--EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             hcCCC-CcEEEEec-CCeEEEEehhHhhhhceEE-cCCCcEEEEecCCC--EEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence            35677 56666655 5689999999998888887 44567777887664  444444 56799999965443322222 2


Q ss_pred             ----cCCeeeEEEcCCCCCeEEEE--e----cCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCC-C-cE
Q 018293          208 ----AADVESLAWDPHAEHSFVVS--L----EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV-P-NL  275 (358)
Q Consensus       208 ----~~~i~~~~~~~~~~~~~~~~--~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~-~~  275 (358)
                          ...|..-..+++..-++++|  .    -.|.+.+|..+.          ...+.+.+|......+.+.-+. + .+
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er----------~~sQ~ieGhaa~F~~~~~~g~~~~~~l  212 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR----------KVSQPIEGHAASFAQFKMEGNAEESTL  212 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT----------TEEEEECCSEEEEEEECCTTCSSCEEE
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc----------CcCccccceeeeeEEEEcCCCCCCceE
Confidence                23466667777555444444  1    246788999875          4566778887666665544211 1 23


Q ss_pred             EEEEe---CCCcEEEEecCCCC---c-e--eeEe--cC--CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccc
Q 018293          276 LATGS---TDKMVKLWDLSNNQ---P-S--CIAS--RN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       276 l~~~~---~dg~i~i~d~~~~~---~-~--~~~~--~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      ++-+.   ..+.+.|.++....   + .  ....  +.  .......++..++.-. ++..-+.-|.|++||+.++.++.
T Consensus       213 f~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~lyDleTgt~i~  291 (327)
T d1utca2         213 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIY  291 (327)
T ss_dssp             EEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEEEEEcccccEEE
Confidence            33222   23578888886532   1 0  0111  11  1234456788888776 57778889999999999999876


Q ss_pred             c
Q 018293          343 N  343 (358)
Q Consensus       343 ~  343 (358)
                      +
T Consensus       292 ~  292 (327)
T d1utca2         292 M  292 (327)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.66  E-value=0.0046  Score=53.24  Aligned_cols=25  Identities=16%  Similarity=0.107  Sum_probs=21.8

Q ss_pred             EEEEEccCCeEEEEEccCCCccccc
Q 018293          320 VLAIGGSKGKLEIWDTLSDAGISNR  344 (358)
Q Consensus       320 ~l~~~~~dg~i~vw~~~~~~~~~~~  344 (358)
                      +++.|+.||.++.+|.++|+.+-+.
T Consensus       477 lVf~G~~dg~l~A~Da~tGe~lW~~  501 (571)
T d2ad6a1         477 LVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEE
Confidence            5677999999999999999998654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.64  E-value=0.0039  Score=50.37  Aligned_cols=199  Identities=13%  Similarity=0.115  Sum_probs=118.5

Q ss_pred             CCCceEEecC-CCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecC--CCCCcEEE
Q 018293           63 EKGNFMAVGS-MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN--KEFRNILA  139 (358)
Q Consensus        63 ~~~~~l~~g~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~l~  139 (358)
                      +||++|.+.. .++.|.+-|+++.+..+-..+                          .....+..+...  |. ..+++
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~i--------------------------Pn~~~~HG~r~~~~p~-T~YV~  149 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEI--------------------------PNAKGIHGLRPQKWPR-SNYVF  149 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEEC--------------------------SSCCSEEEEEECCSSB-CSEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEec--------------------------CCCCCCceeecccCCC-eEEEE
Confidence            4788887665 678999999987665432211                          122334444443  33 33666


Q ss_pred             EEEcC------------------CeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCC--------------
Q 018293          140 SASAD------------------KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--------------  187 (358)
Q Consensus       140 s~~~d------------------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------------  187 (358)
                      .++.+                  +.+.+.|.++++...++.. ......+.++++| +++++.+.+              
T Consensus       150 ~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dG-K~af~TsyNSE~g~~l~e~ta~e  227 (459)
T d1fwxa2         150 CNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAE  227 (459)
T ss_dssp             EEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCS
T ss_pred             ccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeee-CCChhccccCCCC-CEEEEEeccccCCcchhhccccc
Confidence            55543                  2367889998887777653 3456789999999 666665533              


Q ss_pred             ------------------------CcEEEEEcccCC--CccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccC
Q 018293          188 ------------------------RSVVMKDARIST--HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  241 (358)
Q Consensus       188 ------------------------g~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~  241 (358)
                                              +.+.+.|.+...  ..............+..+|++...++++.-+.++.++|+++-
T Consensus       228 ~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki  307 (459)
T d1fwxa2         228 MDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  307 (459)
T ss_dssp             EEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             ceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhh
Confidence                                    122333433321  122233445667789999988877778888999999999753


Q ss_pred             CCCC--CCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecC
Q 018293          242 KSDP--DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  291 (358)
Q Consensus       242 ~~~~--~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~  291 (358)
                      ....  .......+.......-.-...+|...| +...+---|..|.-|++.
T Consensus       308 ~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         308 DAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             HHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHH
T ss_pred             hhhhcccCCccccEEeecccCcCccccccCCCc-eEEEEeeccceEEEEecc
Confidence            2100  000001111111122233556788776 555556679999999985

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.44  E-value=0.0099  Score=50.98  Aligned_cols=59  Identities=8%  Similarity=0.107  Sum_probs=36.6

Q ss_pred             CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          283 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       283 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      |.|.-+|+.+++..-......+   ..+-.+.-.+. ++..|+.||.++.+|..+|+.+-+.-
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~---~~gg~l~Tagg-lVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS---CCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCC---CCCceeEECCC-EEEEECCCCcEEEEECCCCcEeEEEE
Confidence            4566778777764322222221   11112223344 57779999999999999999986543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.43  E-value=0.019  Score=49.50  Aligned_cols=59  Identities=12%  Similarity=0.053  Sum_probs=35.8

Q ss_pred             CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          283 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       283 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      |.|.-||+.+++..-.....   .+..+-.++-.+. ++..|+.||.++.+|..+|+.+-+.-
T Consensus       453 G~l~A~D~~TG~~~W~~~~~---~~~~gg~lsTagg-lVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER---FAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES---SCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCceecccCCC---CCCccceeEecCC-EEEEECCCCeEEEEECCCCcEeeEEE
Confidence            45667777777632211111   1111112223455 56679999999999999999986543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.34  E-value=0.0094  Score=48.31  Aligned_cols=72  Identities=13%  Similarity=0.138  Sum_probs=45.0

Q ss_pred             EEEecCCCCCcEEEEEEcC-CeEEEEECCCCceeeeecc-cccceeeEEEcCCCCcEEEEEeCC------CcEEEEEccc
Q 018293          126 LGLAWNKEFRNILASASAD-KQVKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARI  197 (358)
Q Consensus       126 ~~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~  197 (358)
                      ...++.++ +.+++.|+.+ ..+.+||..+.+-...-.. ....-.+.+..+++ .+++.++.+      ..+.+||..+
T Consensus        79 ~~~~~~~~-g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG-~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          79 PGISMDGN-GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             CEEEECTT-SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             eEEEEecC-CcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCC-ceeeeccccccccccceeeeecCCC
Confidence            34567788 5677777655 5899999987654321111 11122356667787 777777643      3588899876


Q ss_pred             CC
Q 018293          198 ST  199 (358)
Q Consensus       198 ~~  199 (358)
                      .+
T Consensus       157 ~~  158 (387)
T d1k3ia3         157 KT  158 (387)
T ss_dssp             TE
T ss_pred             Cc
Confidence            53

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.26  E-value=0.022  Score=48.91  Aligned_cols=29  Identities=14%  Similarity=0.212  Sum_probs=23.8

Q ss_pred             CCCeEEEEEccCCeEEEEEccCCCcccccc
Q 018293          316 DSPFVLAIGGSKGKLEIWDTLSDAGISNRF  345 (358)
Q Consensus       316 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  345 (358)
                      .+. ++.+|+.||.++.+|.++|+.+-+.-
T Consensus       487 agg-lVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         487 AGN-VVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             TTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCC-EEEEECCCCeEEEEECCCCcEeEEEE
Confidence            455 57779999999999999999986543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.16  E-value=0.059  Score=46.12  Aligned_cols=57  Identities=5%  Similarity=-0.074  Sum_probs=35.8

Q ss_pred             CeEEEEECCCCceeeeeccccccee---------eEEEcCCCC--cEEEEEeCCCcEEEEEcccCCCc
Q 018293          145 KQVKIWDVAAGKCNLTLEHHTDKVQ---------AVAWNHHSP--QILLSGSFDRSVVMKDARISTHS  201 (358)
Q Consensus       145 g~v~iwd~~~~~~~~~~~~~~~~v~---------~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~  201 (358)
                      ..+.-.|+++|+.+..++.....+.         ......++.  ..++..+.+|.+.+.|..+++.+
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i  339 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEe
Confidence            4577789999998877764322111         112222331  25677888999999998877643

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.96  E-value=0.047  Score=41.64  Aligned_cols=233  Identities=13%  Similarity=0.194  Sum_probs=131.6

Q ss_pred             cCCCceEEecCCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCCCcEEEEE
Q 018293           62 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  141 (358)
Q Consensus        62 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  141 (358)
                      +|..+.||.=+ ...++++|+++.+.+....                            ....|.--.|-.+  +.|+-.
T Consensus        71 hP~~~IiALra-g~~LQiFnletK~klks~~----------------------------~~e~VvfWkWis~--~~L~lV  119 (327)
T d1utca2          71 NPASKVIALKA-GKTLQIFNIEMKSKMKAHT----------------------------MTDDVTFWKWISL--NTVALV  119 (327)
T ss_dssp             CSSSSEEEEEE-TTEEEEEETTTTEEEEEEE----------------------------CSSCCCEEEESSS--SEEEEE
T ss_pred             CCCCcEEEEec-CCeEEEEehhHhhhhceEE----------------------------cCCCcEEEEecCC--CEEEEE
Confidence            78888887665 5689999998654443221                            2345666677655  355544


Q ss_pred             EcCCeEEEEECCCC-ceeeeecccc----cceeeEEEcCCCCcEEEEE--e----CCCcEEEEEcccCCCccceeeecCC
Q 018293          142 SADKQVKIWDVAAG-KCNLTLEHHT----DKVQAVAWNHHSPQILLSG--S----FDRSVVMKDARISTHSGFKWAVAAD  210 (358)
Q Consensus       142 ~~dg~v~iwd~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~--~----~dg~i~i~d~~~~~~~~~~~~~~~~  210 (358)
                      + +..|.-|+++.. .+.+.+..|.    ..|-.-..+++..-++++|  .    -.|.+.+|..+...... ..+|.+.
T Consensus       120 T-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~-ieGhaa~  197 (327)
T d1utca2         120 T-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IEGHAAS  197 (327)
T ss_dssp             C-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE-ECCSEEE
T ss_pred             c-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcc-ccceeee
Confidence            4 467999999543 4555555443    4566667778773334333  1    23677888876543322 2333333


Q ss_pred             eeeEEEcCC--CCCeEEEE---ecCCeEEEEEcccCCCCCCCCCCCccEEEe----ecCCceeEEEecCCCCcEEEEEeC
Q 018293          211 VESLAWDPH--AEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLH----AHDKAVCTISYNPLVPNLLATGST  281 (358)
Q Consensus       211 i~~~~~~~~--~~~~~~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~----~~~~~i~~i~~~~~~~~~l~~~~~  281 (358)
                      ...+.+..+  ...+++-+   ...+.+.+.++........ ...+....+.    ....-..++..++.. .+++.-+.
T Consensus       198 F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~-~f~kk~vdi~fppea~~DFPvamqvs~ky-giiyviTK  275 (327)
T d1utca2         198 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ-PFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITK  275 (327)
T ss_dssp             EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCC-CCCCEEEECCCCTTCTTCCEEEEEEETTT-TEEEEEET
T ss_pred             eEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCC-CCcceeEEEECCccccCCcEEEEEeeccC-CEEEEEec
Confidence            222322211  11122222   2336889998876422111 1011111111    113345678888866 68888899


Q ss_pred             CCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEE
Q 018293          282 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI  332 (358)
Q Consensus       282 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v  332 (358)
                      -|.+.+||+.++..+......  ..+|...+-..+..- +++...+|.|.-
T Consensus       276 ~G~i~lyDleTgt~i~~nRIs--~~~iF~~a~~~~~~G-i~~VNr~GqVl~  323 (327)
T d1utca2         276 YGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAG-IIGVNRKGQVLS  323 (327)
T ss_dssp             TSEEEEEETTTCCEEEEEECC--SSCEEEEEEETTTTE-EEEEETTSEEEE
T ss_pred             CcEEEEEEcccccEEEEeecC--CCceEEeccCCCCce-EEEECCCCeEEE
Confidence            999999999999854444443  455665555555443 444556776643

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.66  E-value=0.16  Score=43.45  Aligned_cols=60  Identities=8%  Similarity=0.106  Sum_probs=37.2

Q ss_pred             CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCccccccc
Q 018293          283 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  346 (358)
Q Consensus       283 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  346 (358)
                      |.|.-+|+.+++..  .....+ .++..-..+..+. ++.+|+.||.++.+|.++|+.+-+.-.
T Consensus       466 G~l~AiD~~TG~i~--W~~~~~-~p~~~g~lstagg-lVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         466 GSLRAMDPVSGKVV--WEHKEH-LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             EEEEEECTTTCCEE--EEEEES-SCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEcCCCCcEE--eecCCC-CCCccceeEEcCC-eEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            45777777777632  222211 1222112233455 566799999999999999999865443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.48  E-value=0.14  Score=40.47  Aligned_cols=196  Identities=10%  Similarity=0.126  Sum_probs=114.0

Q ss_pred             CcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEc------CCCCcEEEEEe-CC---CcEEEEEcccCCCccc-
Q 018293          135 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN------HHSPQILLSGS-FD---RSVVMKDARISTHSGF-  203 (358)
Q Consensus       135 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~l~~~~-~d---g~i~i~d~~~~~~~~~-  203 (358)
                      ..+++....++-|.+||++ |+.++.+.  .+.+..+..-      ... .-+++++ .+   .+|.+|.+........ 
T Consensus        40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~-~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          40 NSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKK-VDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEE-EEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             ccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcc-eEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            5577777788789999985 77777664  2345554433      222 2244444 22   3577887753322110 


Q ss_pred             -------eeeecCCeeeEEE--cCCCCC-eEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCC
Q 018293          204 -------KWAVAADVESLAW--DPHAEH-SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  273 (358)
Q Consensus       204 -------~~~~~~~i~~~~~--~~~~~~-~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  273 (358)
                             .......+..+++  ++.++. ++++...+|.+..|.+.......  .....+..+. -...+..+.+.+.. 
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~--v~~~lvr~f~-~~~q~EGCVvDde~-  191 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGY--ISGKKVRAFK-MNSQTEGMAADDEY-  191 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSS--EEEEEEEEEE-CSSCEEEEEEETTT-
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCc--eeeEeeeccC-CCCccceEEEeCCC-
Confidence                   0111224666666  665443 56677789999999885432100  0012233333 34578889999877 


Q ss_pred             cEEEEEeCCCcEEEEecCCC--Cc-eeeEecC--CCCceeEEEEEcC--CC-CeEEEEEccCCeEEEEEccCC
Q 018293          274 NLLATGSTDKMVKLWDLSNN--QP-SCIASRN--PKAGAVFSVAFSE--DS-PFVLAIGGSKGKLEIWDTLSD  338 (358)
Q Consensus       274 ~~l~~~~~dg~i~i~d~~~~--~~-~~~~~~~--~~~~~v~~~~~~~--~~-~~~l~~~~~dg~i~vw~~~~~  338 (358)
                      ..|+.+-++..|..++....  .. ..+....  .....+..++.-.  ++ .|++++.-.++++.+||....
T Consensus       192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            68888877776766665422  11 1222221  2355677776543  33 378888778899999998764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.44  E-value=0.18  Score=41.31  Aligned_cols=216  Identities=10%  Similarity=0.025  Sum_probs=105.6

Q ss_pred             CcccEEEEecCCCCCcEEEEEEcCC----eEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeC----------
Q 018293          121 HTDSVLGLAWNKEFRNILASASADK----QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF----------  186 (358)
Q Consensus       121 h~~~v~~~~~~~~~~~~l~s~~~dg----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----------  186 (358)
                      +.-.+...+++|++..++++-+.+|    .++++|+.+++.+...- .......+.|.+++..++.+.-.          
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            4445566788999655555655565    69999999998654221 11223578999999444444321          


Q ss_pred             -----CCcEEEEEcccCCCcccee-e-e--cCCeeeEEEcCCCCCeEEEEe--cCCe--EEEEEcccCCCCCCCCCCCcc
Q 018293          187 -----DRSVVMKDARISTHSGFKW-A-V--AADVESLAWDPHAEHSFVVSL--EDGT--IKGFDIRTAKSDPDSTSQQSS  253 (358)
Q Consensus       187 -----dg~i~i~d~~~~~~~~~~~-~-~--~~~i~~~~~~~~~~~~~~~~~--~dg~--i~i~d~~~~~~~~~~~~~~~~  253 (358)
                           ...+..+.+.+........ . .  ...+..+..++++..+++...  .+..  +.+.|+.......... ....
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~  280 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI-LKWV  280 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS-CCCE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccc-ccee
Confidence                 1257777776654332111 1 1  123455667776554444332  2333  4444554432111000 0111


Q ss_pred             EEEeecCCceeEEEecCCCCcEEEEEeC---CCcEEEEecCCCCceeeEe-cCCCCceeEEEEEcCCCCeEEEEEccCC-
Q 018293          254 FTLHAHDKAVCTISYNPLVPNLLATGST---DKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGGSKG-  328 (358)
Q Consensus       254 ~~~~~~~~~i~~i~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg-  328 (358)
                      ...........-+.. . +..+++....   ++.|...++.......... +..+...+..-.+...+.++++..-.++ 
T Consensus       281 ~~~~~~~~~~~~~~~-~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~  358 (430)
T d1qfma1         281 KLIDNFEGEYDYVTN-E-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK  358 (430)
T ss_dssp             EEECSSSSCEEEEEE-E-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred             EeecccccceEEEec-C-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCE
Confidence            122222222222222 2 2234333322   3556666766543222222 2334444544344444445555555554 


Q ss_pred             -eEEEEEccCCCc
Q 018293          329 -KLEIWDTLSDAG  340 (358)
Q Consensus       329 -~i~vw~~~~~~~  340 (358)
                       .|+++++.+++.
T Consensus       359 ~~l~v~~~~~~~~  371 (430)
T d1qfma1         359 NTLQLHDLATGAL  371 (430)
T ss_dssp             EEEEEEETTTCCE
T ss_pred             eEEEEEECCCCcE
Confidence             578899877654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.25  E-value=0.19  Score=39.64  Aligned_cols=146  Identities=12%  Similarity=0.088  Sum_probs=80.8

Q ss_pred             CCcEEEEEcccCCCccceeeec-C-------CeeeEEE--cCCCCCeEEEEe---cCCeEEEEEcccCCCCCCCCCCCcc
Q 018293          187 DRSVVMKDARISTHSGFKWAVA-A-------DVESLAW--DPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSS  253 (358)
Q Consensus       187 dg~i~i~d~~~~~~~~~~~~~~-~-------~i~~~~~--~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~  253 (358)
                      .|.|.++|+...+......... .       ....+.+  .+++..+|++..   ...+|.+|++......     ...+
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~-----l~~~  141 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS-----LLHL  141 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE-----EEEE
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCe-----EEEE
Confidence            4889999988765433222111 1       1233332  333443455543   3567888888754210     0111


Q ss_pred             EEEee-cCCceeEEEecCCCCcEEEEEeC---C------------CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCC
Q 018293          254 FTLHA-HDKAVCTISYNPLVPNLLATGST---D------------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS  317 (358)
Q Consensus       254 ~~~~~-~~~~i~~i~~~~~~~~~l~~~~~---d------------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  317 (358)
                      ..+.. .....+.+++..++ .+++|-..   +            +...+|....++...+.   ..-..-+.|+++|++
T Consensus       142 ~~v~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~---~~l~~pNGI~~s~d~  217 (340)
T d1v04a_         142 KTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA---EGFDFANGINISPDG  217 (340)
T ss_dssp             EEECCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEE---EEESSEEEEEECTTS
T ss_pred             eecCCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEc---CCCCccceeEECCCC
Confidence            11111 12346888888877 67776311   1            23344444444321111   122457789999999


Q ss_pred             CeEEEEEccCCeEEEEEccCCCcc
Q 018293          318 PFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       318 ~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      ++++++-+..+.|++|++.....+
T Consensus       218 ~~lyVa~t~~~~i~~y~~~~~~~l  241 (340)
T d1v04a_         218 KYVYIAELLAHKIHVYEKHANWTL  241 (340)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CEEEEEeCCCCeEEEEEeCCCccc
Confidence            988898899999999999765433

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.25  E-value=0.22  Score=42.28  Aligned_cols=46  Identities=13%  Similarity=0.168  Sum_probs=30.1

Q ss_pred             cEEEEEeCCCcEEEEecCCCCceeeEecCC--CCceeEEEEEcCCCCeEEE
Q 018293          274 NLLATGSTDKMVKLWDLSNNQPSCIASRNP--KAGAVFSVAFSEDSPFVLA  322 (358)
Q Consensus       274 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~  322 (358)
                      .++++|+.||.++.+|.++++.+-......  +..+   +.+.-+|+..++
T Consensus       470 glVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P---~ty~~dGkqyv~  517 (560)
T d1kv9a2         470 NLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP---MTFELAGRQYVA  517 (560)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEE
T ss_pred             CEEEEECCCCcEEEEECCCCcEeEEEECCCCccccC---EEEEECCEEEEE
Confidence            688899999999999999999543333332  1222   455567753333

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.93  E-value=0.19  Score=40.07  Aligned_cols=96  Identities=8%  Similarity=0.015  Sum_probs=62.3

Q ss_pred             cEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccc
Q 018293          124 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  203 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  203 (358)
                      .|..++|+.+   .++.. .++.+..++...-...........++..+.++|.   .++....+|.+.++++........
T Consensus        88 ~v~~vafs~d---~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~  160 (381)
T d1xipa_          88 DVIFVCFHGD---QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQL  160 (381)
T ss_dssp             TEEEEEEETT---EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CeEEEEeeCC---EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccc
Confidence            5888999855   44443 4567888887665444444444567888888885   467777899999999987753321


Q ss_pred             e-----eeecCCeeeEEEcCCCCCeEEEE
Q 018293          204 K-----WAVAADVESLAWDPHAEHSFVVS  227 (358)
Q Consensus       204 ~-----~~~~~~i~~~~~~~~~~~~~~~~  227 (358)
                      .     ......+.+++|++ ++..++++
T Consensus       161 ~~~v~~~~~~~~~~~v~ws~-kgkq~v~~  188 (381)
T d1xipa_         161 AQNVTSFDVTNSQLAVLLKD-RSFQSFAW  188 (381)
T ss_dssp             EESEEEEEECSSEEEEEETT-SCEEEEEE
T ss_pred             cCCcceEEecCCceEEEEeC-CcEEEEEe
Confidence            1     12335677777776 44455555

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.87  E-value=0.4  Score=40.81  Aligned_cols=81  Identities=12%  Similarity=0.178  Sum_probs=46.6

Q ss_pred             CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecCC--CCcee
Q 018293          231 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP--KAGAV  308 (358)
Q Consensus       231 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~v  308 (358)
                      |.+.-||+.++         +.+....... +..+-..+-.+ .++++|+.||.++.+|.++++.+-......  +..+ 
T Consensus       457 G~l~AiD~~tG---------k~~W~~~~~~-p~~gg~lstag-glVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P-  524 (573)
T d1kb0a2         457 GRLLAWDPVAQ---------KAAWSVEHVS-PWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP-  524 (573)
T ss_dssp             EEEEEEETTTT---------EEEEEEEESS-SCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC-
T ss_pred             ccEEEeCCCCC---------ceEeeecCCC-CCCCceEEEcC-CEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC-
Confidence            56777888877         4444444322 11111122234 688899999999999999999543333332  2233 


Q ss_pred             EEEEEcCCCC-eEEEEEc
Q 018293          309 FSVAFSEDSP-FVLAIGG  325 (358)
Q Consensus       309 ~~~~~~~~~~-~~l~~~~  325 (358)
                        +.|.-+|+ |+++.++
T Consensus       525 --~ty~~~GkQYv~v~~G  540 (573)
T d1kb0a2         525 --STYMVDGRQYVSVAVG  540 (573)
T ss_dssp             --EEEEETTEEEEEEEEC
T ss_pred             --EEEEECCEEEEEEEeC
Confidence              44555775 4444433

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.81  E-value=0.47  Score=40.52  Aligned_cols=195  Identities=13%  Similarity=0.131  Sum_probs=107.1

Q ss_pred             CcEEEEEEcCCeEEEEEC-CCCceeeeeccccc-----------ceeeEEEcCCC---CcEEEEEeCCCcEEEEEcccCC
Q 018293          135 RNILASASADKQVKIWDV-AAGKCNLTLEHHTD-----------KVQAVAWNHHS---PQILLSGSFDRSVVMKDARIST  199 (358)
Q Consensus       135 ~~~l~s~~~dg~v~iwd~-~~~~~~~~~~~~~~-----------~v~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~  199 (358)
                      +.++++.+.++.+...|. ++|+.+.++.....           .-+.+++.++.   ...++.++.|+.|.-.|.++++
T Consensus        63 g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~  142 (596)
T d1w6sa_          63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (596)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCc
Confidence            333444444566777775 56777776542110           11334443321   2468888999999999999887


Q ss_pred             Cccceeeec----CCeee-EEEcCCCCCeEEEEec------CCeEEEEEcccCCCCCCCCCCCccEEEeec---------
Q 018293          200 HSGFKWAVA----ADVES-LAWDPHAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---------  259 (358)
Q Consensus       200 ~~~~~~~~~----~~i~~-~~~~~~~~~~~~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---------  259 (358)
                      .........    ..++. -.+.   +..++++..      .|.|+-||.+++         +.+..+...         
T Consensus       143 ~~w~~~~~d~~~~~~~t~~P~v~---~~~vivg~~~~e~~~~G~v~A~Da~TG---------~~~W~~~t~~~~~~~~~~  210 (596)
T d1w6sa_         143 TVWKVENSDIKVGSTLTIAPYVV---KDKVIIGSSGAELGVRGYLTAYDVKTG---------EQVWRAYATGPDKDLLLA  210 (596)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEE---TTEEEECCBCGGGTCCCEEEEEETTTC---------CEEEEEESSSCHHHHTBC
T ss_pred             eeccccccccccccccccCCcEE---CCeEEEeeccccccccCceEEEECCCC---------cEEEEeeccCCccccccc
Confidence            654322111    11111 1111   235666543      488999999998         444333211         


Q ss_pred             -----------------------------CCceeEEEecCCCCcEEEEEeCC----------------CcEEEEecCCCC
Q 018293          260 -----------------------------DKAVCTISYNPLVPNLLATGSTD----------------KMVKLWDLSNNQ  294 (358)
Q Consensus       260 -----------------------------~~~i~~i~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~  294 (358)
                                                   ...-..+.+.+.. .+++.+..+                ..|.-.|+++++
T Consensus       211 ~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~-~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~  289 (596)
T d1w6sa_         211 SDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE  289 (596)
T ss_dssp             TTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC
T ss_pred             cccccccccccccccccccCCCCceecCCCccccccccccCC-Ceeeccccccccccccccccccccccccccccccccc
Confidence                                         0011233445544 455544332                347778999988


Q ss_pred             ceeeEecCCCCc-------eeEEEE-EcCCCC--eEEEEEccCCeEEEEEccCCCccc
Q 018293          295 PSCIASRNPKAG-------AVFSVA-FSEDSP--FVLAIGGSKGKLEIWDTLSDAGIS  342 (358)
Q Consensus       295 ~~~~~~~~~~~~-------~v~~~~-~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~  342 (358)
                      ..-.+....|..       ...-+. ...+|+  .+++....+|.+.++|..+|+.+.
T Consensus       290 ~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~  347 (596)
T d1w6sa_         290 AKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (596)
T ss_dssp             EEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceee
Confidence            544444444422       111111 123332  357778899999999999999774

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.60  E-value=0.4  Score=38.17  Aligned_cols=176  Identities=11%  Similarity=0.069  Sum_probs=98.6

Q ss_pred             cEEEEecCCCCCcEEEEEEcCCeEEEEECCCC---------ceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEE
Q 018293          124 SVLGLAWNKEFRNILASASADKQVKIWDVAAG---------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  194 (358)
Q Consensus       124 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  194 (358)
                      ...-++.++. ..++++|+.++ +.|-.++.-         ......+..-..|..++|+.+   .++.. .++.+..++
T Consensus        38 ~~~LLAVsn~-~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d---~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISNS-KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD---QVLVS-TRNALYSLD  111 (381)
T ss_dssp             CCBCEEEETT-TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT---EEEEE-ESSEEEEEE
T ss_pred             ccceEEEeCC-CCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC---EEEEE-eCCCEEEEE
Confidence            4567778877 44787777765 667664210         000111111235788899754   34443 456677787


Q ss_pred             cccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccE----EEeecCCceeEEEecC
Q 018293          195 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF----TLHAHDKAVCTISYNP  270 (358)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~i~~i~~~~  270 (358)
                      ...............++..+.++|   ..++....+|.+.++++.....       ..+.    .+. -.+.+.+++|++
T Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~-------~~~~~~v~~~~-~~~~~~~v~ws~  180 (381)
T d1xipa_         112 LEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKST-------KQLAQNVTSFD-VTNSQLAVLLKD  180 (381)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCE-------EEEEESEEEEE-ECSSEEEEEETT
T ss_pred             eeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCcc-------ccccCCcceEE-ecCCceEEEEeC
Confidence            766544433444566788888887   3677778899999999987631       1111    111 135567778877


Q ss_pred             CCCcEEEEEeCCCcEEEE-ecCCCCceeeEecCCCCceeEEEEEcCCCCeE
Q 018293          271 LVPNLLATGSTDKMVKLW-DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFV  320 (358)
Q Consensus       271 ~~~~~l~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  320 (358)
                      .+ ..++++..++ ..+- ++....  .+.........+.++.|..+..++
T Consensus       181 kg-kq~v~~~g~~-~q~k~~i~~~~--~~~~p~~~~~~v~sI~WL~~~~F~  227 (381)
T d1xipa_         181 RS-FQSFAWRNGE-MEKQFEFSLPS--ELEELPVEEYSPLSVTILSPQDFL  227 (381)
T ss_dssp             SC-EEEEEEETTE-EEEEEEECCCH--HHHTSCTTTSEEEEEEESSSSEEE
T ss_pred             Cc-EEEEEeCCCc-eeeccCCCCcc--ccCCCcCCCcceeEEEEecCceEE
Confidence            65 5666653222 2111 221111  111111234568899999887753

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.39  E-value=0.53  Score=38.29  Aligned_cols=241  Identities=14%  Similarity=0.068  Sum_probs=122.6

Q ss_pred             cccCCCceEEec-----CCCCeEEEEEcccccCcCceeecCCcccccccccccCCceeccccccCCCcccEEEEecCCCC
Q 018293           60 KDREKGNFMAVG-----SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF  134 (358)
Q Consensus        60 ~~s~~~~~l~~g-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  134 (358)
                      ..||+++++|.+     +....|+++|+.+++.+....                            .......+.|.+++
T Consensus       131 ~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i----------------------------~~~~~~~~~W~~D~  182 (430)
T d1qfma1         131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL----------------------------ERVKFSCMAWTHDG  182 (430)
T ss_dssp             EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE----------------------------EEECSCCEEECTTS
T ss_pred             EecCCCCEEEEEeccccCchheeEEeccCcceeccccc----------------------------ccccccceEEcCCC
Confidence            358999999842     333589999998766443110                            01112467899995


Q ss_pred             CcEEEEEEc---------------CCeEEEEECCCCce--eeeeccc--ccceeeEEEcCCCCcEEE-EEeC--CCc--E
Q 018293          135 RNILASASA---------------DKQVKIWDVAAGKC--NLTLEHH--TDKVQAVAWNHHSPQILL-SGSF--DRS--V  190 (358)
Q Consensus       135 ~~~l~s~~~---------------dg~v~iwd~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~~l~-~~~~--dg~--i  190 (358)
                      ..++.+.-.               ...|..+.+.+...  ...+...  ...+..+..++++ ++++ ....  +..  +
T Consensus       183 ~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~-~~l~i~~~~~~~~~~~~  261 (430)
T d1qfma1         183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRL  261 (430)
T ss_dssp             SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEE
T ss_pred             CEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCc-ceeeEEeeccCCccEEE
Confidence            544444321               12577777766532  2223322  2345567778888 5544 3332  333  4


Q ss_pred             EEEEcccCCCcc-------ceee-ecCCeeeEEEcCCCCCeEEEEe---cCCeEEEEEcccCCCCCCCCCCCccEEEe-e
Q 018293          191 VMKDARISTHSG-------FKWA-VAADVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLH-A  258 (358)
Q Consensus       191 ~i~d~~~~~~~~-------~~~~-~~~~i~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~  258 (358)
                      .+.|+.......       .... ......-+.. . ++.+++...   .++.|...++.....       .....+. .
T Consensus       262 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~-------~~w~~vi~~  332 (430)
T d1qfma1         262 WYCDLQQESNGITGILKWVKLIDNFEGEYDYVTN-E-GTVFTFKTNRHSPNYRLINIDFTDPEE-------SKWKVLVPE  332 (430)
T ss_dssp             EEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEE-E-TTEEEEEECTTCTTCEEEEEETTBCCG-------GGCEEEECC
T ss_pred             EEeeCCCcccccccccceeEeecccccceEEEec-C-CceeecccCcccccceeEEecCCCCcc-------ccceEEecc
Confidence            444554332211       0011 1112222222 1 333333332   346677777765421       2223333 3


Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCc--EEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEcc---CCeEEEE
Q 018293          259 HDKAVCTISYNPLVPNLLATGSTDKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS---KGKLEIW  333 (358)
Q Consensus       259 ~~~~i~~i~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~vw  333 (358)
                      +...+..-.+...+..+++....++.  |++++..++....+  .....+.+..+...++...+.++.+.   =.++.-|
T Consensus       333 ~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~--~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~  410 (430)
T d1qfma1         333 HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKI--FPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHC  410 (430)
T ss_dssp             CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEE--ECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEE
T ss_pred             cCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEe--cCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEE
Confidence            44444433333333234445455554  88899988874332  33334667666666666544443321   1578899


Q ss_pred             EccCCCc
Q 018293          334 DTLSDAG  340 (358)
Q Consensus       334 ~~~~~~~  340 (358)
                      |+.+++.
T Consensus       411 Dl~t~~~  417 (430)
T d1qfma1         411 DLTKEEL  417 (430)
T ss_dssp             ETTSSSC
T ss_pred             ECCCCCc
Confidence            9998864

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.38  Score=36.38  Aligned_cols=63  Identities=21%  Similarity=0.422  Sum_probs=33.2

Q ss_pred             cEEEEEeCC-----CcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCC-----eEEEEEccCCC
Q 018293          274 NLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-----KLEIWDTLSDA  339 (358)
Q Consensus       274 ~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~vw~~~~~~  339 (358)
                      .+++.|+.+     .....+|..+.+...+.......... +++. .+++ +++.|+.++     .|.+||+.+.+
T Consensus       197 ~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~-~~~~-~~~~-l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         197 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL-GITV-HQGR-IYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTE-EEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             eEEEecCccccccccceeeeeecceeeecccCccCcccce-EEEE-ECCE-EEEEecCCCCeecceEEEEECCCCE
Confidence            555665544     34677887776532222111111111 2232 2555 677777654     37889998643

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.33  E-value=0.7  Score=39.31  Aligned_cols=49  Identities=18%  Similarity=0.289  Sum_probs=32.2

Q ss_pred             cEEEEEeCCCcEEEEecCCCCceeeEecCC--CCceeEEEEEcCCCC-eEEEEEc
Q 018293          274 NLLATGSTDKMVKLWDLSNNQPSCIASRNP--KAGAVFSVAFSEDSP-FVLAIGG  325 (358)
Q Consensus       274 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~-~~l~~~~  325 (358)
                      .++++|+.||.++.+|.++++.+-......  +..+   |.+..+|+ |+++.++
T Consensus       498 glVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~G~qYv~i~ag  549 (582)
T d1flga_         498 NLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP---ITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEEEEEC
T ss_pred             CeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEEEEEEEeC
Confidence            688889999999999999999543333322  2223   45667784 4444433

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.05  E-value=0.67  Score=33.16  Aligned_cols=193  Identities=11%  Similarity=0.109  Sum_probs=102.1

Q ss_pred             ccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceee--eecc-------cccceeeEEEcCCCCcEEEEEeC-CCcEEE
Q 018293          123 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL--TLEH-------HTDKVQAVAWNHHSPQILLSGSF-DRSVVM  192 (358)
Q Consensus       123 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~-------~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i  192 (358)
                      -.|.+++..  +.+..++|+....+.+|-++.|+...  .+..       ..+.|..+.+...++.-++++.. .|.+++
T Consensus       104 vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri  181 (313)
T d2hu7a1         104 MRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV  181 (313)
T ss_dssp             BEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEE
T ss_pred             EEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEE
Confidence            346666655  45689999998899999998886432  2221       22445555554444345666665 788888


Q ss_pred             EEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecC---CeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEec
Q 018293          193 KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED---GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN  269 (358)
Q Consensus       193 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  269 (358)
                      ++...+           .++.....+ +. .++++-+.   ....-+|+++++........+....+  ....|+-+-+.
T Consensus       182 ~tpkeG-----------S~~~ay~~~-gn-KV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy--~p~~I~~~~Y~  246 (313)
T d2hu7a1         182 FDSGEG-----------SFSSASISP-GM-KVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSY--RPTAITWLGYL  246 (313)
T ss_dssp             ECCSSE-----------EEEEEEECT-TS-CEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHH--CCSEEEEEEEC
T ss_pred             ecCCCC-----------cccceeEcc-Cc-eeeeccCCCCceEEEEEecccCceeeeecCcccceee--cceEEEeeeeC
Confidence            775543           344444555 22 33443221   12224566654211100000111111  12346667799


Q ss_pred             CCCCcEEEEEeCCCcEEEEecCCCCceeeEecCCCCceeEEEEEcCCCCeEEEEEccCCeEEEEEccCCCcc
Q 018293          270 PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  341 (358)
Q Consensus       270 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~  341 (358)
                      |++ ++++.+-.||.=++|.  +++  .+   ....+.+..+..-.+.- .+...+-..--++-.+.+++.+
T Consensus       247 Pdd-~L~iiakrdG~s~lF~--nGk--~i---n~p~G~~~gat~i~~~i-yfshsSL~tP~kI~~~~~~~~~  309 (313)
T d2hu7a1         247 PDG-RLAVVARREGRSAVFI--DGE--RV---EAPQGNHGRVVLWRGKL-VTSHTSLSTPPRIVSLPSGEPL  309 (313)
T ss_dssp             TTS-CEEEEEEETTEEEEEE--TTE--EE---CCCSSEEEEEEEETTEE-EEEEEETTEEEEEEEETTCCEE
T ss_pred             CCC-cEEEEEecCCchheee--cce--Ee---cCCCCcccceEEECCEE-EEeecccCCCceeEEcCCCCcc
Confidence            998 8888889999999987  333  12   22234444444333322 1333333344556666666544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.92  E-value=1.3  Score=36.12  Aligned_cols=53  Identities=15%  Similarity=0.231  Sum_probs=36.2

Q ss_pred             cceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccce--------eeecCCeeeEEEcCC
Q 018293          166 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--------WAVAADVESLAWDPH  219 (358)
Q Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~i~~~~~~~~  219 (358)
                      ...++|+|.|++ +++++--..|.|++++..++......        ...+.....++++|+
T Consensus        27 ~~P~~la~~pdg-~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCC-eEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            456799999999 77666555799999987665432211        112345678999985

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.81  E-value=1.1  Score=34.95  Aligned_cols=141  Identities=10%  Similarity=0.089  Sum_probs=77.9

Q ss_pred             CCCCCcEEEEEE---cCCeEEEEECCCCce----eeeec-ccccceeeEEEcCCCCcEEEEEeC---C------------
Q 018293          131 NKEFRNILASAS---ADKQVKIWDVAAGKC----NLTLE-HHTDKVQAVAWNHHSPQILLSGSF---D------------  187 (358)
Q Consensus       131 ~~~~~~~l~s~~---~dg~v~iwd~~~~~~----~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~---d------------  187 (358)
                      .+++..+|++..   ...+|.+|++.....    +.++. ......+.+.+..++ .+++|-..   +            
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~  185 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGL  185 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcC
Confidence            345444565553   356788888754321    11222 122446788888887 66666311   0            


Q ss_pred             CcEEEEEcccCCCccceeeecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEE
Q 018293          188 RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS  267 (358)
Q Consensus       188 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  267 (358)
                      +...+|....++. ......-...+.++++|++..++++-+..+.|+.|++.....       ........-....-.+.
T Consensus       186 ~~g~v~~~~~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~-------l~~~~~~~l~~~pDNi~  257 (340)
T d1v04a_         186 AWSFVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT-------LTPLRVLSFDTLVDNIS  257 (340)
T ss_dssp             CCEEEEEECSSCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC-------EEEEEEEECSSEEEEEE
T ss_pred             CceeEEEEcCCce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcc-------cceEEEecCCCCCCccE
Confidence            2233333333332 223334467889999998777777778899999999975421       11111112344556777


Q ss_pred             ecCCCCcEEEEEe
Q 018293          268 YNPLVPNLLATGS  280 (358)
Q Consensus       268 ~~~~~~~~l~~~~  280 (358)
                      +.+.++.+.+++.
T Consensus       258 ~d~~~g~lwva~~  270 (340)
T d1v04a_         258 VDPVTGDLWVGCH  270 (340)
T ss_dssp             ECTTTCCEEEEEE
T ss_pred             EecCCCEEEEEEC
Confidence            7764435555443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.67  E-value=1.2  Score=34.85  Aligned_cols=143  Identities=8%  Similarity=0.086  Sum_probs=81.6

Q ss_pred             eEEEEECCC-Cceeeeecc-------cccceeeEEE--cCCCCc-EEEEEeCCCcEEEEEcccCCCc------cceeeec
Q 018293          146 QVKIWDVAA-GKCNLTLEH-------HTDKVQAVAW--NHHSPQ-ILLSGSFDRSVVMKDARISTHS------GFKWAVA  208 (358)
Q Consensus       146 ~v~iwd~~~-~~~~~~~~~-------~~~~v~~~~~--~~~~~~-~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~  208 (358)
                      +|.+|.+.. ...+..+..       ....+..+|+  ++..+. ++++...+|.+..|.+......      ...+...
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~  179 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN  179 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC
Confidence            677887752 222333321       1124667777  665433 5677788999999887543221      1133456


Q ss_pred             CCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee--cCCceeEEEecC--CCCcEEE-EEeCCC
Q 018293          209 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNP--LVPNLLA-TGSTDK  283 (358)
Q Consensus       209 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~--~~~~~l~-~~~~dg  283 (358)
                      ..+..|.+++. ...|+.+-++..+..++........    ...+....+  ....+-.+++-.  ++..+|+ +.-.++
T Consensus       180 ~q~EGCVvDde-~~~LyisEE~~Giw~~~a~~~~~~~----~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n  254 (353)
T d1h6la_         180 SQTEGMAADDE-YGSLYIAEEDEAIWKFSAEPDGGSN----GTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNS  254 (353)
T ss_dssp             SCEEEEEEETT-TTEEEEEETTTEEEEEESSTTSCSC----CEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             CccceEEEeCC-CCcEEEecCccceEEEEeccCCCcc----ceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCC
Confidence            77899999985 4578888777766666654321110    011111111  245667776553  3333544 444578


Q ss_pred             cEEEEecCCC
Q 018293          284 MVKLWDLSNN  293 (358)
Q Consensus       284 ~i~i~d~~~~  293 (358)
                      +..+||....
T Consensus       255 ~f~vydr~~~  264 (353)
T d1h6la_         255 SYAIYERQGQ  264 (353)
T ss_dssp             EEEEEESSTT
T ss_pred             eEEEEecCCC
Confidence            8999999774

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=92.34  E-value=2.2  Score=34.27  Aligned_cols=150  Identities=11%  Similarity=0.118  Sum_probs=82.1

Q ss_pred             CCcccEEEEecCCCCCcEEEEEEcCCeEEEEECCCCceeeee-------cccccceeeEEEcCCCCcEEEEEeCC----C
Q 018293          120 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-------EHHTDKVQAVAWNHHSPQILLSGSFD----R  188 (358)
Q Consensus       120 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~d----g  188 (358)
                      +-.+.|.+|+++|.+.+++.++...|-|..-+ ..++.=..+       ......+.+|+++|..+..+..+..+    .
T Consensus         9 ~~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~-dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~   87 (427)
T d2ebsa1           9 GGGGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDE   87 (427)
T ss_dssp             CBCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSS
T ss_pred             CCCCcEEEEEECCCCCCEEEEEecCCCEEEEE-CCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCc
Confidence            34678999999999888888888766553322 233321111       11234578899999876666665422    1


Q ss_pred             cEEEEEcccCCCcccee----------eecCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEE--
Q 018293          189 SVVMKDARISTHSGFKW----------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL--  256 (358)
Q Consensus       189 ~i~i~d~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--  256 (358)
                      ...+|-...+...-...          ........+.++|.+.+.+++++.++.|  |.-....        ......  
T Consensus        88 ~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl--~~S~D~G--------~tW~~~~~  157 (427)
T d2ebsa1          88 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRA--------KTWTNVTS  157 (427)
T ss_dssp             CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCE--EEESSTT--------SSCEECTT
T ss_pred             CccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccce--eeecCCC--------ceeeeccc
Confidence            12344333222111000          0113356789999888888888766654  3222221        111111  


Q ss_pred             ----eecCCceeEEEecCCCCcEEEEEe
Q 018293          257 ----HAHDKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       257 ----~~~~~~i~~i~~~~~~~~~l~~~~  280 (358)
                          ......+..+.++|..+..|+++.
T Consensus       158 ~~~~~~~~~~~~~i~~~p~~~~~~y~~~  185 (427)
T d2ebsa1         158 IPDAFTNGIGYTSVIFDPERNGTIYASA  185 (427)
T ss_dssp             SSCCCCSSSCEEEEEECTTSTTCEEEEE
T ss_pred             CcccccCCccceEEEecccccceeeeee
Confidence                112334778899887656555443

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=89.70  E-value=4.1  Score=32.61  Aligned_cols=156  Identities=11%  Similarity=0.025  Sum_probs=83.1

Q ss_pred             cccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCc--------cceeeecCCeeeEEEcCCCCCeEEEEecC----C
Q 018293          164 HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS--------GFKWAVAADVESLAWDPHAEHSFVVSLED----G  231 (358)
Q Consensus       164 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~~~~~~~d----g  231 (358)
                      -.+.|.+|+++|..+.+++++...|-|..  ...+...        .........+.+++++|.+++.+.++..+    .
T Consensus        10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~~--S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~   87 (427)
T d2ebsa1          10 GGGYITGIVAHPKTKDLLYARTDIGGAYR--WDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDE   87 (427)
T ss_dssp             BCSCEEEEEECSSSTTCEEEEESSSCEEE--EETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSS
T ss_pred             CCCcEEEEEECCCCCCEEEEEecCCCEEE--EECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCc
Confidence            45779999999998888888887766543  2222110        00111234578999999877777776532    1


Q ss_pred             eEEEEEcccCCCCCCCCCCCccEEEee---------cCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCcee-eE--
Q 018293          232 TIKGFDIRTAKSDPDSTSQQSSFTLHA---------HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC-IA--  299 (358)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~--  299 (358)
                      ...+|--..+.        +....+..         .......+.++|..+..|++++.++.|.. ....++... +.  
T Consensus        88 ~~gi~~S~DgG--------~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~-S~D~G~tW~~~~~~  158 (427)
T d2ebsa1          88 WAAFYVSEDRG--------QSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSI  158 (427)
T ss_dssp             CCEEEEESSTT--------SEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEE-ESSTTSSCEECTTS
T ss_pred             CccEEEeCCCC--------ccceeecCCcccCccccCccceeEEEECCCccCcccccccccceee-ecCCCceeeecccC
Confidence            12344433321        11111110         11235568899987777877776655432 333333111 10  


Q ss_pred             -ecCCCCceeEEEEEcCCCCe-EEEEEccCCeE
Q 018293          300 -SRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKL  330 (358)
Q Consensus       300 -~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i  330 (358)
                       ........+..+.++|.... +++++...+.|
T Consensus       159 ~~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~gi  191 (427)
T d2ebsa1         159 PDAFTNGIGYTSVIFDPERNGTIYASATAPQGM  191 (427)
T ss_dssp             SCCCCSSSCEEEEEECTTSTTCEEEEESSTTCE
T ss_pred             cccccCCccceEEEecccccceeeeeeeecccc
Confidence             01112234778899886433 34444444444

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.51  E-value=4.5  Score=32.82  Aligned_cols=57  Identities=12%  Similarity=0.107  Sum_probs=33.3

Q ss_pred             cEEEEEeCCCcEEEEecCCCCceee---EecCCCCceeEEEEEcCCCCeEEEEEccCCeE
Q 018293          274 NLLATGSTDKMVKLWDLSNNQPSCI---ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKL  330 (358)
Q Consensus       274 ~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  330 (358)
                      .+|+..-.++.|....+........   .....-.+.+..|++.|||..++++-...|.|
T Consensus       370 ~lfvg~l~~~~i~~v~~~~~~~~~~~~~~~~~~~~~R~rdv~~gpDGs~lyv~~d~~G~i  429 (450)
T d1crua_         370 TLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTDTAGNV  429 (450)
T ss_dssp             EEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEECSSCCE
T ss_pred             CEEEEECcCCEEEEEEEcCCCceeeEEEEeccCCCCCceEEEECCCCCEEEEEECCCCCE
Confidence            4555444567777777765432111   11222335688999999998445655555654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.41  E-value=2.6  Score=30.06  Aligned_cols=194  Identities=8%  Similarity=0.099  Sum_probs=98.4

Q ss_pred             CcEEEEEEcCCeEEEEECCCCceeeeecccccceeeEEEcCCC-CcEEEEE------eCCCcEEEEEcccCCCccceeee
Q 018293          135 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS-PQILLSG------SFDRSVVMKDARISTHSGFKWAV  207 (358)
Q Consensus       135 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~------~~dg~i~i~d~~~~~~~~~~~~~  207 (358)
                      .++++.+...|.+.++-+..++.+..-+   .+|....- |.. -.++...      -+-..+.+-++....... ....
T Consensus        26 d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~-Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~-~i~s  100 (313)
T d2hu7a1          26 DKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLD-PHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA  100 (313)
T ss_dssp             TEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECE-ECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEE-ECTT
T ss_pred             CcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCC-CccCcceEEEEeehhcCcceeeEEEEccCCCCeee-EecC
Confidence            5688889899999999988776554332   33332211 111 0111111      112234444443211111 1111


Q ss_pred             cCCeeeEEEcCCCCCeEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEee-------cCCceeEEEecCCCCcEEEEEe
Q 018293          208 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-------HDKAVCTISYNPLVPNLLATGS  280 (358)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~i~~~~~~~~~l~~~~  280 (358)
                      ..++.-+...-++.+.+++|+......+|-+..++.       +.+..+.+       ....|..+.+-.-++.-++++.
T Consensus       101 pk~vRI~S~~yddk~vvF~Gased~~~LYviegGkl-------rkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~ad  173 (313)
T d2hu7a1         101 VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL-------RELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSN  173 (313)
T ss_dssp             SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE-------EEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred             CceEEEEEeeecCceEEEecccCCceEEEEEeCCce-------eeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEe
Confidence            222333333345678999999888889998887643       22222211       1233444444332223344444


Q ss_pred             C-CCcEEEEecCCCCce--------------------eeEecCCC------------------CceeEEEEEcCCCCeEE
Q 018293          281 T-DKMVKLWDLSNNQPS--------------------CIASRNPK------------------AGAVFSVAFSEDSPFVL  321 (358)
Q Consensus       281 ~-dg~i~i~d~~~~~~~--------------------~~~~~~~~------------------~~~v~~~~~~~~~~~~l  321 (358)
                      - .|.++|++...+...                    ....+...                  ...|+-+-+.|+++ ++
T Consensus       174 l~SG~lri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~-L~  252 (313)
T d2hu7a1         174 LSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGR-LA  252 (313)
T ss_dssp             TTTEEEEEECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSC-EE
T ss_pred             cccCCEEEecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCc-EE
Confidence            4 666666665432110                    00011111                  11354566899999 67


Q ss_pred             EEEccCCeEEEEEccCCCcccc
Q 018293          322 AIGGSKGKLEIWDTLSDAGISN  343 (358)
Q Consensus       322 ~~~~~dg~i~vw~~~~~~~~~~  343 (358)
                      +.+-.||.-++|.  +|+.+..
T Consensus       253 iiakrdG~s~lF~--nGk~in~  272 (313)
T d2hu7a1         253 VVARREGRSAVFI--DGERVEA  272 (313)
T ss_dssp             EEEEETTEEEEEE--TTEEECC
T ss_pred             EEEecCCchheee--cceEecC
Confidence            7788999999987  4555543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.35  E-value=5.6  Score=29.41  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=17.4

Q ss_pred             cEEEEEeCCCc-----EEEEecCCCCceeeE
Q 018293          274 NLLATGSTDKM-----VKLWDLSNNQPSCIA  299 (358)
Q Consensus       274 ~~l~~~~~dg~-----i~i~d~~~~~~~~~~  299 (358)
                      ++++.|+.++.     +.+||+.+.....+.
T Consensus       244 ~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  274 (288)
T d1zgka1         244 RIYVLGGYDGHTFLDSVECYDPDTDTWSEVT  274 (288)
T ss_dssp             EEEEECCBCSSCBCCEEEEEETTTTEEEEEE
T ss_pred             EEEEEecCCCCeecceEEEEECCCCEEEECC
Confidence            67777765543     788998887644443

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=81.25  E-value=8.4  Score=28.42  Aligned_cols=167  Identities=15%  Similarity=0.134  Sum_probs=81.4

Q ss_pred             cCCeEEEEECCCCceeeeecccccceeeEEEcCCCCcEEEEEeCCCcEEEEEcccCCCccceeeecCCeeeEEEcCCCCC
Q 018293          143 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  222 (358)
Q Consensus       143 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  222 (358)
                      .|+.+..|.....-...........+..+.-...   ..+ .-.|+.+..|.-...............+..++-.   . 
T Consensus        81 ~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~---~~~-~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~---~-  152 (273)
T d1jtdb_          81 KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW---ASY-ALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG---V-  152 (273)
T ss_dssp             ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETT---EEE-EEETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC---S-
T ss_pred             eeeeeeccCCCcceeeccccccccceeEEeeecc---ccc-ccccccceecccCCCCceeeeccCCceEEEEecc---c-
Confidence            5899999986432111111112233444443332   222 2348889988755433332222333445554432   2 


Q ss_pred             eEEEEecCCeEEEEEcccCCCCCCCCCCCccEEEeecCCceeEEEecCCCCcEEEEEeCCCcEEEEecCCCCceeeEecC
Q 018293          223 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  302 (358)
Q Consensus       223 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  302 (358)
                      .......++.++.|-......         ..........|..|+....  ..++ -. ||.|+-|=..........  .
T Consensus       153 ~~~~~~~~g~~~~~G~~~~g~---------~~~~~~~~~~v~~Is~G~~--h~~~-l~-dG~v~~WG~n~~Gql~~~--~  217 (273)
T d1jtdb_         153 YTALAVKNGGVIAWGDNYFGQ---------TTVPAEAQSGVDDVAGGIF--HSLA-LK-DGKVIAWGDNRYKQTTVP--T  217 (273)
T ss_dssp             SEEEEEETTEEEEEECCTTST---------TSCCGGGSSSEEEEEECSS--EEEE-EE-TTEEEEEECCTTSTTCCC--G
T ss_pred             eeeeeecccceeEeecccCCc---------ccccccccCCccceeccce--eeEE-Ee-cCcEEEcCCCCCCccCCC--c
Confidence            333444688899887654421         1111123445777765532  2333 23 799999965432211110  1


Q ss_pred             CCCceeEEEEEcCCCCeEEEEEccCCeEEEEEcc
Q 018293          303 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  336 (358)
Q Consensus       303 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw~~~  336 (358)
                      .....|..|+-....  .++.  .||.|..|-..
T Consensus       218 ~~~~~v~~I~~G~~~--~~~l--~~g~v~~WG~~  247 (273)
T d1jtdb_         218 EALSGVSAIASGEWY--SLAL--KNGKVIAWGSS  247 (273)
T ss_dssp             GGGSSCCEEEECSSC--EEEE--ETTEEEEESTT
T ss_pred             cCCCCcEEEEeCcce--EEEE--ECCEEEEECCC
Confidence            112346666544332  2443  37999999543