Citrus Sinensis ID: 018300
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 358 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SZJ5 | 517 | Serine hydroxymethyltrans | no | no | 0.826 | 0.572 | 0.622 | 1e-110 | |
| P34899 | 518 | Serine hydroxymethyltrans | N/A | no | 0.740 | 0.511 | 0.688 | 1e-110 | |
| P49358 | 517 | Serine hydroxymethyltrans | N/A | no | 0.737 | 0.510 | 0.689 | 1e-109 | |
| P50433 | 518 | Serine hydroxymethyltrans | N/A | no | 0.740 | 0.511 | 0.681 | 1e-109 | |
| P49357 | 517 | Serine hydroxymethyltrans | N/A | no | 0.740 | 0.512 | 0.681 | 1e-108 | |
| Q54Z26 | 457 | Serine hydroxymethyltrans | yes | no | 0.748 | 0.586 | 0.667 | 1e-108 | |
| Q54EW1 | 481 | Serine hydroxymethyltrans | no | no | 0.759 | 0.565 | 0.635 | 1e-105 | |
| O13972 | 467 | Probable serine hydroxyme | yes | no | 0.748 | 0.573 | 0.651 | 1e-103 | |
| P34898 | 480 | Serine hydroxymethyltrans | N/A | no | 0.768 | 0.572 | 0.633 | 1e-103 | |
| P34897 | 504 | Serine hydroxymethyltrans | yes | no | 0.754 | 0.535 | 0.641 | 1e-103 |
| >sp|Q9SZJ5|GLYM_ARATH Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/315 (62%), Positives = 231/315 (73%), Gaps = 19/315 (6%)
Query: 46 CRCSSIEGSLVTGRPPSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSL 105
C SS+ V + S V+ P ++ L E DPE+ +II EK RQ+K L
Sbjct: 27 CYMSSLPSEAVDEKERSRVTWP---------KQLNAPLEEVDPEIADIIEHEKARQWKGL 77
Query: 106 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE 165
ELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYID ETLCQKRAL AF LD
Sbjct: 78 ELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDP 137
Query: 166 NKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE 225
KWGVNVQPLSGSPANF VYTA+LKPH+RIM LDLPHGGHLSHG+ T +++S SI+FE
Sbjct: 138 EKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFE 197
Query: 226 SMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMD 285
+MPYRLDESTG +DYD +EK+A LFRPKLI+AGASAY R +DY R+R++ + A+++ D
Sbjct: 198 TMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLAD 257
Query: 286 MAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKK---------DPVLGVEL 336
MAHISGLVAA+V+ PF Y DVVTTTTHKSLRGPRG MIFF+K VL +
Sbjct: 258 MAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVL-YDF 316
Query: 337 ESAINNAVFPGLQVG 351
E IN AVFPGLQ G
Sbjct: 317 EDKINQAVFPGLQGG 331
|
Interconversion of serine and glycine. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 2EC: .EC: 1 |
| >sp|P34899|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/273 (68%), Positives = 216/273 (79%), Gaps = 8/273 (2%)
Query: 87 DPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 146
DPE+ +II EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYI
Sbjct: 60 DPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 119
Query: 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 206
D ETLCQKRAL AF LD KWGVNVQPLSGSP+NF+VYTA+LKPHDRIM LDLPHGGHL
Sbjct: 120 DMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 179
Query: 207 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 266
SHG+ T +++S SI+FE+MPYRLDESTG +DYD LEK+A LFRPKLI+AGASAY R +
Sbjct: 180 SHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 239
Query: 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 326
DY R+R++ D A+L+ DMAHISGLVAA V+ PF Y DVVTTTTHKSLRGPRG MIFF
Sbjct: 240 DYARIRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFF 299
Query: 327 KK--------DPVLGVELESAINNAVFPGLQVG 351
+K + + E IN AVFPGLQ G
Sbjct: 300 RKGLKEVNKQGKEVFYDYEDKINQAVFPGLQGG 332
|
Interconversion of serine and glycine. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|P49358|GLYN_FLAPR Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1 | Back alignment and function description |
|---|
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/274 (68%), Positives = 215/274 (78%), Gaps = 10/274 (3%)
Query: 87 DPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 146
DPE+ +II EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYI
Sbjct: 60 DPEIADIIELEKARQWKGLELILSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 119
Query: 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 206
D ETLCQKRAL AF LD KWGVNVQPLSGSPANF VYTA+LK HDRIM LDLPHGGHL
Sbjct: 120 DMAETLCQKRALEAFRLDAAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHL 179
Query: 207 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 266
SHG+ T +++S SI+FE+MPYRL+ESTG +DYD LEK+A LFRPKLI+AGASAY R +
Sbjct: 180 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 239
Query: 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 326
DY R+R++ D A+L+ DMAHISGLVAA V+ PF Y DVVTTTTHKSLRGPRG MIFF
Sbjct: 240 DYARIRKVCDKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFF 299
Query: 327 KK---------DPVLGVELESAINNAVFPGLQVG 351
+K VL + E IN AVFPGLQ G
Sbjct: 300 RKGVKEVNKQGKEVL-YDYEDKINQAVFPGLQGG 332
|
Interconversion of serine and glycine. Flaveria pringlei (taxid: 4226) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|P50433|GLYM_SOLTU Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/273 (68%), Positives = 216/273 (79%), Gaps = 8/273 (2%)
Query: 87 DPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 146
DPE+ +II EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYI
Sbjct: 60 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 119
Query: 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 206
D ETLCQKRAL AF LD KWGVNVQPLSGSPANF+VYTA+LKPH+RIM LDLPHGGHL
Sbjct: 120 DMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFQVYTALLKPHERIMALDLPHGGHL 179
Query: 207 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 266
SHG+ T +++S SI+FE+MPYRLDESTG +DYD LEK+A LFRPKLI+AGASAY R +
Sbjct: 180 SHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 239
Query: 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 326
DY R+R++ + A+L+ DMAHISGLVAA V+ PF Y DVVTTTTHKSLRGPRG MIF+
Sbjct: 240 DYDRIRKVCNKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFY 299
Query: 327 KK--------DPVLGVELESAINNAVFPGLQVG 351
+K + + E IN AVFPGLQ G
Sbjct: 300 RKGVKEVNKQGKEVFYDYEDKINQAVFPGLQGG 332
|
Interconversion of serine and glycine. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|P49357|GLYM_FLAPR Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1 | Back alignment and function description |
|---|
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/273 (68%), Positives = 214/273 (78%), Gaps = 8/273 (2%)
Query: 87 DPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 146
DPE+ +II EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYI
Sbjct: 60 DPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 119
Query: 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 206
D ETLCQKRAL AF LD KWGVNVQPLSGSPANF VYTA+LK HDRIM LDLPHGGHL
Sbjct: 120 DMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHL 179
Query: 207 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 266
SHG+ T +++S SI+FE+MPYRL+ESTG +DYD LEK+A LFRPKLI+AGASAY R +
Sbjct: 180 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 239
Query: 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 326
DY R+R++ D A+++ DMAHISGLVAA V+ PF Y DVVTTTTHKSLRGPRG MIFF
Sbjct: 240 DYARIRKVCDKQKAIMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFF 299
Query: 327 KK--------DPVLGVELESAINNAVFPGLQVG 351
+K + + E IN AVFPGLQ G
Sbjct: 300 RKGLKEVNKQGKEVFYDYEDKINQAVFPGLQGG 332
|
Interconversion of serine and glycine. Flaveria pringlei (taxid: 4226) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|Q54Z26|GLYC1_DICDI Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 185/277 (66%), Positives = 223/277 (80%), Gaps = 9/277 (3%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L E D E+ E++ +EK+RQFK LELIASENFTSRAVMEA+GS TNKY+EG PG RYYGG
Sbjct: 10 LKEVDNEIFELMNREKDRQFKGLELIASENFTSRAVMEALGSHFTNKYAEGYPGSRYYGG 69
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E +DELETLCQKRAL AF LDE+KWGVNVQP SGSPANF VYTA+L+PHDRIMGLDLP
Sbjct: 70 TEVVDELETLCQKRALKAFRLDESKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPS 129
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG+ T K+++S +SI+FESMPY++ + GL+DY LE+ A+LF+PKLII+GASAY
Sbjct: 130 GGHLTHGYQTDKKKISASSIFFESMPYQIG-ADGLIDYQRLEENALLFKPKLIISGASAY 188
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR++DY RMR IAD VGA LM DMAH SGLVAA ++ PF YCDVVT+TTHK+LRGPR G
Sbjct: 189 PREWDYKRMRAIADKVGAYLMCDMAHYSGLVAAQLLDSPFDYCDVVTSTTHKTLRGPRSG 248
Query: 323 MIFFKK--------DPVLGVELESAINNAVFPGLQVG 351
+IFF++ + ++ES IN AVFP LQ G
Sbjct: 249 IIFFRRGKRVDGNGKEIEEYDIESKINFAVFPSLQGG 285
|
Interconversion of serine and glycine. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|Q54EW1|GLYC2_DICDI Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 382 bits (981), Expect = e-105, Method: Compositional matrix adjust.
Identities = 178/280 (63%), Positives = 220/280 (78%), Gaps = 8/280 (2%)
Query: 79 VDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKR 138
+ S+ E+DPE+ +++ KEK+RQF LELIASENFTSRAVME++GSC TNKY+EGLPG R
Sbjct: 30 TNRSVSESDPEIYDLMMKEKQRQFTGLELIASENFTSRAVMESIGSCFTNKYAEGLPGAR 89
Query: 139 YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGL 198
YYGGNE +D+LE LC KRAL FNL+ +WGVNVQP SGS ANF +T +LKPHDRIMGL
Sbjct: 90 YYGGNEVVDQLENLCIKRALETFNLNPEEWGVNVQPYSGSTANFAAFTGLLKPHDRIMGL 149
Query: 199 DLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258
DLP GGHL+HG+ T K+++S TSI+FESMPY+++E TG VDY+ +E A LFRPKL+IAG
Sbjct: 150 DLPSGGHLTHGYQTDKKKISATSIFFESMPYQVNE-TGYVDYNKMEANAALFRPKLLIAG 208
Query: 259 ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG 318
ASAYPR++DY RMR+IAD GA L+ DMAHISG+VA PF +CDVVTTTTHK+LRG
Sbjct: 209 ASAYPREWDYERMRKIADKHGAYLLCDMAHISGMVAGKQAISPFLFCDVVTTTTHKTLRG 268
Query: 319 PRGGMIFFKKDP-------VLGVELESAINNAVFPGLQVG 351
PR G+IFF+K ++ +LE+ IN AVFP Q G
Sbjct: 269 PRAGLIFFRKTKRRDAKGNIIDDDLENRINFAVFPSCQGG 308
|
Interconversion of serine and glycine. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|O13972|GLYD_SCHPO Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24C9.12c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/278 (65%), Positives = 218/278 (78%), Gaps = 10/278 (3%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L E DP V EI+ E +RQ S+ LIASENFTSRAVM+A+GS ++NKYSEG PG RYYGG
Sbjct: 12 LKEQDPTVAEIMRHEADRQRSSVVLIASENFTSRAVMDALGSVMSNKYSEGYPGARYYGG 71
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
N++ID++ETLCQ+RALAAFNLD KWGVNVQ LSGSPAN +VY AI+ PH R+MGLDLP
Sbjct: 72 NKFIDQIETLCQERALAAFNLDPAKWGVNVQCLSGSPANMQVYQAIMPPHGRLMGLDLPS 131
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHLSHG+ T +++S S YFESMPYR+D +TGL+DYDMLE A LFRPK+++AG SAY
Sbjct: 132 GGHLSHGYQTDTKKISAVSTYFESMPYRVDPNTGLIDYDMLEHDAQLFRPKILVAGTSAY 191
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R DY RMRQIAD+V A L++DMAHISGLV+A V+ PF+Y DVVTTTTHKSLRGPRG
Sbjct: 192 CRLIDYARMRQIADSVNAYLVVDMAHISGLVSAGVIPSPFEYADVVTTTTHKSLRGPRGA 251
Query: 323 MIFFKK---------DPVLGVELESAINNAVFPGLQVG 351
MIFF++ +P+ +LE IN +VFPG Q G
Sbjct: 252 MIFFRRGLRKHDKKGNPIY-YDLEDKINFSVFPGHQGG 288
|
Interconversion of serine and glycine. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|P34898|GLYC_NEUCR Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=for PE=3 SV=2 | Back alignment and function description |
|---|
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/284 (63%), Positives = 223/284 (78%), Gaps = 9/284 (3%)
Query: 77 SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPG 136
+ +++SL E+DP+V EI+ KE +RQ +S+ LIASEN TSRAV +A+GS ++NKYSEGLPG
Sbjct: 12 AMLEHSLVESDPQVAEIMKKEVQRQRESIILIASENVTSRAVFDALGSPMSNKYSEGLPG 71
Query: 137 KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIM 196
RYYGGN++IDE+E LCQ RAL AF+LD +WGVNVQ LSGSPAN +VY AI+ H R+M
Sbjct: 72 ARYYGGNQHIDEIEVLCQNRALEAFHLDPKQWGVNVQCLSGSPANLQVYQAIMPVHGRLM 131
Query: 197 GLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 256
GLDLPHGGHLSHG+ TP+R++S S YFE+MPYR++ TGL+DYD LEK A LFRPK+++
Sbjct: 132 GLDLPHGGHLSHGYQTPQRKISAVSTYFETMPYRVNIDTGLIDYDTLEKNAQLFRPKVLV 191
Query: 257 AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL 316
AG SAY R DY RMR+IAD+VGA L++DMAHISGL+A+ V+ PF Y DVVTTTTHKSL
Sbjct: 192 AGTSAYCRLIDYERMRKIADSVGAYLVVDMAHISGLIASEVIPSPFLYADVVTTTTHKSL 251
Query: 317 RGPRGGMIFFKK-----DPVLGVE----LESAINNAVFPGLQVG 351
RGPRG MIFF++ D G E LE IN +VFPG Q G
Sbjct: 252 RGPRGAMIFFRRGVRSVDAKTGKETLYDLEDKINFSVFPGHQGG 295
|
Interconversion of serine and glycine. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|P34897|GLYM_HUMAN Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/279 (64%), Positives = 218/279 (78%), Gaps = 9/279 (3%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
SL ++DPE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYG
Sbjct: 48 SLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYG 107
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G E +DE+E LCQ+RAL AF+LD +WGVNVQP SGSPAN VYTA+L+PHDRIMGLDLP
Sbjct: 108 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLP 167
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
GGHL+HG+M+ +R+S TSI+FESMPY+L+ TGL+DY+ L TA LFRP+LIIAG SA
Sbjct: 168 DGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA 227
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y R DY RMR++ D V A L+ DMAHISGLVAA V+ PFK+ D+VTTTTHK+LRG R
Sbjct: 228 YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS 287
Query: 322 GMIFFKK-----DPVLGVEL----ESAINNAVFPGLQVG 351
G+IF++K DP G E+ E IN AVFP LQ G
Sbjct: 288 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGG 326
|
Contributes to the de novo mitochondrial thymidylate biosynthesis pathway. Required to prevent uracil accumulation in mtDNA. Interconversion of serine and glycine. Associates with mitochondrial DNA. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 358 | ||||||
| 224092216 | 529 | serine hydroxymethyltransferase 8 [Popul | 0.980 | 0.663 | 0.900 | 0.0 | |
| 134142079 | 529 | plastid serine hydroxymethyltransferase | 0.980 | 0.663 | 0.894 | 0.0 | |
| 225429452 | 528 | PREDICTED: serine hydroxymethyltransfera | 0.977 | 0.662 | 0.857 | 1e-177 | |
| 255557552 | 527 | serine hydroxymethyltransferase, putativ | 0.974 | 0.662 | 0.857 | 1e-177 | |
| 449460014 | 528 | PREDICTED: serine hydroxymethyltransfera | 0.977 | 0.662 | 0.826 | 1e-170 | |
| 351724373 | 536 | serine hydroxymethyltransferase 4 [Glyci | 0.969 | 0.647 | 0.779 | 1e-160 | |
| 297798710 | 530 | hypothetical protein ARALYDRAFT_491471 [ | 0.980 | 0.662 | 0.780 | 1e-159 | |
| 356555484 | 536 | PREDICTED: LOW QUALITY PROTEIN: serine h | 0.969 | 0.647 | 0.773 | 1e-158 | |
| 18418028 | 529 | serine hydroxymethyltransferase 3 [Arabi | 0.980 | 0.663 | 0.783 | 1e-158 | |
| 14030719 | 529 | AT4g32520/F8B4_220 [Arabidopsis thaliana | 0.980 | 0.663 | 0.783 | 1e-158 |
| >gi|224092216|ref|XP_002309513.1| serine hydroxymethyltransferase 8 [Populus trichocarpa] gi|222855489|gb|EEE93036.1| serine hydroxymethyltransferase 8 [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/351 (90%), Positives = 330/351 (94%)
Query: 1 MQACSGAAVMGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRP 60
MQA SGAAVMGSLQQP+ KGP P + SV++GFP Q++LN VKPCR SS+EGSLVTGRP
Sbjct: 1 MQATSGAAVMGSLQQPVLSKGPAFPMKRSVIIGFPYQVKLNSVKPCRASSLEGSLVTGRP 60
Query: 61 PSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVME 120
PSSVSVPIPE G D SSF DY LGEADPEV EII KEK+RQFKSLELIASENFTSRAVME
Sbjct: 61 PSSVSVPIPETGADISSFKDYGLGEADPEVLEIINKEKDRQFKSLELIASENFTSRAVME 120
Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180
AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALA+FNLD KWGVNVQPLSGSPA
Sbjct: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALASFNLDGKKWGVNVQPLSGSPA 180
Query: 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
NFEVYTA+LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY
Sbjct: 181 NFEVYTALLKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
Query: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300
DMLEKTAILFRPKLIIAGASAYPRDFDYPRMR+IADAVGA LMMDMAHISGLVAASVVAD
Sbjct: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVAD 300
Query: 301 PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQVG 351
PF+YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGV++ESAINNAVFPGLQ G
Sbjct: 301 PFEYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVDMESAINNAVFPGLQGG 351
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|134142079|gb|ABO61383.1| plastid serine hydroxymethyltransferase [Populus tremuloides] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/351 (89%), Positives = 328/351 (93%)
Query: 1 MQACSGAAVMGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRP 60
MQA SGAAVMGSLQQP+ KGP P + SV++GFP Q++LN VKPCR SS+EGSLVTGRP
Sbjct: 1 MQATSGAAVMGSLQQPVLSKGPAFPMKRSVIIGFPYQVKLNSVKPCRASSLEGSLVTGRP 60
Query: 61 PSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVME 120
PSSVSVPIPE G D SSF DY L EADPEV EII KEK+RQFKSLELIASENFTSRAVME
Sbjct: 61 PSSVSVPIPETGADISSFKDYGLSEADPEVLEIIKKEKDRQFKSLELIASENFTSRAVME 120
Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180
AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALA+FNLD KWGVNVQPLSGSPA
Sbjct: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALASFNLDGKKWGVNVQPLSGSPA 180
Query: 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
NFEVYTA+LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY
Sbjct: 181 NFEVYTALLKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
Query: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300
DMLEKTAILFRPKLIIAGASAYPRDFDYPRMR+IADAVGA LMMDMAHISGLV ASVVAD
Sbjct: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVPASVVAD 300
Query: 301 PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQVG 351
PF+YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGV++ESAINNAVFPGLQ G
Sbjct: 301 PFEYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVDMESAINNAVFPGLQGG 351
|
Source: Populus tremuloides Species: Populus tremuloides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225429452|ref|XP_002277146.1| PREDICTED: serine hydroxymethyltransferase, mitochondrial [Vitis vinifera] gi|296081614|emb|CBI20619.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust.
Identities = 301/351 (85%), Positives = 319/351 (90%), Gaps = 1/351 (0%)
Query: 1 MQACSGAAVMGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRP 60
MQACSG A MGSLQQPIW+KG GS + GFP+QI+LN VKPCR S I+GSLVTG+P
Sbjct: 1 MQACSGTAAMGSLQQPIWIKGSSFAPNGSTVNGFPHQIKLNSVKPCR-SYIKGSLVTGKP 59
Query: 61 PSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVME 120
PSSVSV +P G G +F+D+ L EADPEVC II KEK+RQ KSLELIASENFTSRAVME
Sbjct: 60 PSSVSVTVPGNGDSGVNFIDHGLNEADPEVCAIIYKEKQRQMKSLELIASENFTSRAVME 119
Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180
AVGSCLTNKYSEGLPGKRYYGGNE+IDELETLCQKRALAAF+LD KWGVNVQPLSGSPA
Sbjct: 120 AVGSCLTNKYSEGLPGKRYYGGNEFIDELETLCQKRALAAFHLDGKKWGVNVQPLSGSPA 179
Query: 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
NFEVYTA+L PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY
Sbjct: 180 NFEVYTALLNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 239
Query: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300
DMLEKTA LFRPKLIIAGASAYPRDFDYPRMR+IAD VGA LMMDMAHISGLVAASVVAD
Sbjct: 240 DMLEKTANLFRPKLIIAGASAYPRDFDYPRMRKIADGVGAFLMMDMAHISGLVAASVVAD 299
Query: 301 PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQVG 351
PF+YCD+VTTTTHKSLRGPRGGMIFFKKD VLGV+LESAINNAVFPGLQ G
Sbjct: 300 PFEYCDIVTTTTHKSLRGPRGGMIFFKKDSVLGVDLESAINNAVFPGLQGG 350
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557552|ref|XP_002519806.1| serine hydroxymethyltransferase, putative [Ricinus communis] gi|223541045|gb|EEF42602.1| serine hydroxymethyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust.
Identities = 301/351 (85%), Positives = 319/351 (90%), Gaps = 2/351 (0%)
Query: 1 MQACSGAAVMGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRP 60
MQ C+GA VMGSLQQP+W+KG LP + S VGFP+QI+LN +PCR +I+GSLV GRP
Sbjct: 1 MQGCTGAQVMGSLQQPVWIKGSSLPLKQSNFVGFPHQIKLNSFRPCRYLNIQGSLVAGRP 60
Query: 61 PSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVME 120
PSSVSVP EI GD SSF DY L EADPEV EII KEK RQFKSLELIASENFTSRAVME
Sbjct: 61 PSSVSVP--EIEGDRSSFKDYGLSEADPEVREIIEKEKNRQFKSLELIASENFTSRAVME 118
Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180
AVGSCLTNKYSEGLPGKRYYGGNE+IDELETLCQ+RALAAF LD KWGVNVQPLSGSPA
Sbjct: 119 AVGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQERALAAFGLDRKKWGVNVQPLSGSPA 178
Query: 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
NFEVYTA+L PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY
Sbjct: 179 NFEVYTALLNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 238
Query: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300
DMLEKTA LFRPKLIIAGASAYPRDFDYPRMR+IADAVGA LMMDMAHISGLVAASVV D
Sbjct: 239 DMLEKTANLFRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVGD 298
Query: 301 PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQVG 351
PF+YCD+VTTTTHKSLRGPRGGMIFF+KD +LGV+LESAINNAVFPGLQ G
Sbjct: 299 PFEYCDIVTTTTHKSLRGPRGGMIFFRKDTILGVDLESAINNAVFPGLQGG 349
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460014|ref|XP_004147741.1| PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Cucumis sativus] gi|449519543|ref|XP_004166794.1| PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 290/351 (82%), Positives = 317/351 (90%), Gaps = 1/351 (0%)
Query: 1 MQACSGAAVMGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRP 60
MQA SG AVMGSLQ + KG PS+ S + FP Q ++N++KPC+ +E S+V G+P
Sbjct: 1 MQATSGVAVMGSLQVAVCGKGSCFPSKSSSICVFPQQKKMNILKPCKSFKVEASMVAGKP 60
Query: 61 PSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVME 120
SSVSV +PEIGG S+FVD++L E DPEV II KEK+RQFKSLELIASENFTSRAVME
Sbjct: 61 SSSVSVTVPEIGGV-SNFVDHALSETDPEVRSIIDKEKQRQFKSLELIASENFTSRAVME 119
Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180
AVGSCLTNKYSEGLPGKRYYGGNE+IDELETLCQ+RALAAF+LD NKWGVNVQPLSGSPA
Sbjct: 120 AVGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFHLDNNKWGVNVQPLSGSPA 179
Query: 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
NFEVYTA+L PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE+TG+VDY
Sbjct: 180 NFEVYTAVLNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETTGIVDY 239
Query: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300
DMLEKTA LFRPKLIIAGASAYPRDFDYPRMR+IADAVGA LMMDMAHISGLVAASVVAD
Sbjct: 240 DMLEKTANLFRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVAD 299
Query: 301 PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQVG 351
PF+YCD+VTTTTHKSLRGPRGGMIFF+KDPVLGV+LESAINNAVFPGLQ G
Sbjct: 300 PFEYCDIVTTTTHKSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGG 350
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351724373|ref|NP_001238335.1| serine hydroxymethyltransferase 4 [Glycine max] gi|222142535|gb|ACM45954.1| serine hydroxymethyltransferase 4 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 282/362 (77%), Positives = 308/362 (85%), Gaps = 15/362 (4%)
Query: 1 MQACSGAAVMGSLQQ-PIWVKGPRLPSEG-SVMVGFPNQIRLNMVKPCRCSSIEGSLVTG 58
MQAC+ M SLQQ PIW KG P++G GF Q+R +KP + S +E SLVTG
Sbjct: 1 MQACT---TMSSLQQQPIWTKGLNFPAKGYGSNNGFLPQVRFCNIKPSKASHVEASLVTG 57
Query: 59 RPPSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAV 118
+P SSV +PEIGGDGSSF+DY L EADP+V II KEK+RQFKSLELIASENFTSRAV
Sbjct: 58 KP-SSVPFSVPEIGGDGSSFLDYGLSEADPDVRAIIDKEKDRQFKSLELIASENFTSRAV 116
Query: 119 MEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 178
MEAVGSCLTNKYSEGLPGKRYYGGNEYIDELE LCQ+RALAAF++DENKWGVNVQ LSGS
Sbjct: 117 MEAVGSCLTNKYSEGLPGKRYYGGNEYIDELEILCQQRALAAFHVDENKWGVNVQTLSGS 176
Query: 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 238
PANF VYTA+LKPHDRIMGLDLPHGGHLSHGFMTPK+RVS TSIYFESMPYRLDESTGL+
Sbjct: 177 PANFAVYTAVLKPHDRIMGLDLPHGGHLSHGFMTPKKRVSATSIYFESMPYRLDESTGLI 236
Query: 239 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMR---------QIADAVGALLMMDMAHI 289
DYDMLEKTA LFRPKLI+AGASAYPRD DYPRMR +IAD VGA LMMDMAHI
Sbjct: 237 DYDMLEKTATLFRPKLIVAGASAYPRDIDYPRMRKLITSYMHGKIADEVGAFLMMDMAHI 296
Query: 290 SGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQ 349
SGLVAASV+++PF+YCD+VTTTTHKSLRGPRGGMIFFKKD V GV+LE AINNAVFPGLQ
Sbjct: 297 SGLVAASVLSNPFEYCDIVTTTTHKSLRGPRGGMIFFKKDTVHGVDLEPAINNAVFPGLQ 356
Query: 350 VG 351
G
Sbjct: 357 GG 358
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798710|ref|XP_002867239.1| hypothetical protein ARALYDRAFT_491471 [Arabidopsis lyrata subsp. lyrata] gi|297313075|gb|EFH43498.1| hypothetical protein ARALYDRAFT_491471 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 274/351 (78%), Positives = 297/351 (84%)
Query: 1 MQACSGAAVMGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRP 60
MQAC G M SLQQP V+G P + F Q++ N KP R S +E +LV R
Sbjct: 1 MQACCGGTSMASLQQPGRVQGSVFPPLMPPVTKFSQQLKFNFSKPFRSSFLERNLVFERR 60
Query: 61 PSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVME 120
SSVS+P E+ +F DY LGE DPEV IITKEK+RQF+SLELIASENFTSRAVME
Sbjct: 61 ASSVSLPNVEMSSKDIAFADYGLGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVME 120
Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180
AVGSCLTNKYSEGLPGKRYYGGNEYID+LETLCQ RALAAF LD KWGVNVQPLSGSPA
Sbjct: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPA 180
Query: 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
NF VYTAIL PHDRIMGLDLPHGGHLSHGFMT KRRVSGTSIYFESMPYRLDESTG+VDY
Sbjct: 181 NFAVYTAILSPHDRIMGLDLPHGGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDY 240
Query: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300
DMLEKTA LFRPKLIIAGASAY RDFDYPR+R+IAD++GA LMMDMAHISGLVAASVVAD
Sbjct: 241 DMLEKTATLFRPKLIIAGASAYSRDFDYPRLRKIADSIGAFLMMDMAHISGLVAASVVAD 300
Query: 301 PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQVG 351
PF+YCD+VTTTTHKSLRGPRGGMIFF+KDP+ GV+LESA+NNAVFPGLQ G
Sbjct: 301 PFEYCDIVTTTTHKSLRGPRGGMIFFRKDPINGVDLESAVNNAVFPGLQGG 351
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555484|ref|XP_003546061.1| PREDICTED: LOW QUALITY PROTEIN: serine hydroxymethyltransferase, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 280/362 (77%), Positives = 306/362 (84%), Gaps = 15/362 (4%)
Query: 1 MQACSGAAVMGSLQQ-PIWVKGPRLPSEG-SVMVGFPNQIRLNMVKPCRCSSIEGSLVTG 58
MQAC+ +M SLQQ PIW KG P++G GF Q+R +KP + S +E SLV G
Sbjct: 1 MQACT---MMSSLQQQPIWTKGLNFPAKGYGSNNGFVTQLRFCNIKPSKASHVEASLVAG 57
Query: 59 RPPSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAV 118
+P SSVS +PEIGGDGSSF+DY L EADPEV II KEK+RQFKSLELIASENFTSRAV
Sbjct: 58 KP-SSVSFSVPEIGGDGSSFLDYGLSEADPEVRAIIDKEKDRQFKSLELIASENFTSRAV 116
Query: 119 MEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 178
MEAVGSCLTNKYSEGLPG+RYYGGNEYIDELETLCQ+RALAAF++D NKWGVNVQ LSGS
Sbjct: 117 MEAVGSCLTNKYSEGLPGRRYYGGNEYIDELETLCQQRALAAFHVDGNKWGVNVQTLSGS 176
Query: 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 238
PANF V+TA+LKPHDRIMGLDLPHGGHLSHGFMTPK+RVS TSIYFE MPY LDESTGL+
Sbjct: 177 PANFAVFTAVLKPHDRIMGLDLPHGGHLSHGFMTPKKRVSATSIYFEPMPYXLDESTGLI 236
Query: 239 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMR---------QIADAVGALLMMDMAHI 289
DYDMLEKTA LFRPKLIIAGASAYP D DYPRMR +IAD VGA LMMDMAHI
Sbjct: 237 DYDMLEKTATLFRPKLIIAGASAYPXDIDYPRMRKLITSYTHGKIADEVGAFLMMDMAHI 296
Query: 290 SGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQ 349
SGLVAASV+A+PF+YCD+VTTTTHKSLRGPRGGMIFFKKD V GV+LE AINNAVFPGLQ
Sbjct: 297 SGLVAASVLANPFEYCDIVTTTTHKSLRGPRGGMIFFKKDTVHGVDLEPAINNAVFPGLQ 356
Query: 350 VG 351
G
Sbjct: 357 GG 358
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18418028|ref|NP_567895.1| serine hydroxymethyltransferase 3 [Arabidopsis thaliana] gi|186515561|ref|NP_001119098.1| serine hydroxymethyltransferase 3 [Arabidopsis thaliana] gi|332660671|gb|AEE86071.1| serine hydroxymethyltransferase 3 [Arabidopsis thaliana] gi|332660672|gb|AEE86072.1| serine hydroxymethyltransferase 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust.
Identities = 275/351 (78%), Positives = 297/351 (84%)
Query: 1 MQACSGAAVMGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRP 60
MQAC G M SLQQP V+G P + F Q++ N+ KP R S ++ +LV+
Sbjct: 1 MQACCGGNSMASLQQPGRVQGSVFPPIMPPVTKFSQQLKFNISKPFRSSFLKRNLVSEMR 60
Query: 61 PSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVME 120
SSVS+P EI F DY LGE DPEV IITKEK+RQF+SLELIASENFTSRAVME
Sbjct: 61 ASSVSLPNVEISSKEIPFEDYGLGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVME 120
Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180
AVGSCLTNKYSEGLPGKRYYGGNEYID+LETLCQ RALAAF LD KWGVNVQPLSGSPA
Sbjct: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPA 180
Query: 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
NF VYTAIL PHDRIMGLDLPHGGHLSHGFMT KRRVSGTSIYFESMPYRLDESTG+VDY
Sbjct: 181 NFAVYTAILSPHDRIMGLDLPHGGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDY 240
Query: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300
DMLEKTA LFRPKLIIAGASAY RDFDYPRMR+IAD+VGA LMMDMAHISGLVAASVVAD
Sbjct: 241 DMLEKTATLFRPKLIIAGASAYSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVAD 300
Query: 301 PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQVG 351
PF+YCD+VTTTTHKSLRGPRGGMIFF+KDP+ GV+LESA+NNAVFPGLQ G
Sbjct: 301 PFEYCDIVTTTTHKSLRGPRGGMIFFRKDPINGVDLESAVNNAVFPGLQGG 351
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|14030719|gb|AAK53034.1|AF375450_1 AT4g32520/F8B4_220 [Arabidopsis thaliana] gi|23308475|gb|AAN18207.1| At4g32520/F8B4_220 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust.
Identities = 275/351 (78%), Positives = 297/351 (84%)
Query: 1 MQACSGAAVMGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRP 60
MQAC G M SLQQP V+G P + F Q++ N+ KP R S ++ +LV+
Sbjct: 1 MQACCGGNSMASLQQPGRVQGSVFPPIMPPVTKFSQQLKFNISKPFRSSFLKRNLVSEMR 60
Query: 61 PSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVME 120
SSVS+P EI F DY LGE DPEV IITKEK+RQF+SLELIASENFTSRAVME
Sbjct: 61 ASSVSLPNVEISSKEIPFEDYGLGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVME 120
Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180
AVGSCLTNKYSEGLPGKRYYGGNEYID+LETLCQ RALAAF LD KWGVNVQPLSGSPA
Sbjct: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPA 180
Query: 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
NF VYTAIL PHDRIMGLDLPHGGHLSHGFMT KRRVSGTSIYFESMPYRLDESTG+VDY
Sbjct: 181 NFAVYTAILSPHDRIMGLDLPHGGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDY 240
Query: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300
DMLEKTA LFRPKLIIAGASAY RDFDYPRMR+IAD+VGA LMMDMAHISGLVAASVVAD
Sbjct: 241 DMLEKTATLFRPKLIIAGASAYSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVAD 300
Query: 301 PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQVG 351
PF+YCD+VTTTTHKSLRGPRGGMIFF+KDP+ GV+LESA+NNAVFPGLQ G
Sbjct: 301 PFEYCDIVTTTTHKSLRGPRGGMIFFRKDPINGVDLESAVNNAVFPGLQGG 351
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 358 | ||||||
| TAIR|locus:2127806 | 529 | SHM3 "serine hydroxymethyltran | 0.980 | 0.663 | 0.769 | 8.9e-141 | |
| TAIR|locus:2005518 | 517 | SHM1 "serine transhydroxymethy | 0.751 | 0.520 | 0.682 | 3.5e-98 | |
| TAIR|locus:2148463 | 533 | SHM2 "serine hydroxymethyltran | 0.754 | 0.506 | 0.679 | 3.5e-98 | |
| DICTYBASE|DDB_G0277947 | 457 | shmt1 "serine hydroxymethyltra | 0.770 | 0.603 | 0.663 | 2e-97 | |
| UNIPROTKB|E1BS67 | 486 | SHMT1 "Uncharacterized protein | 0.787 | 0.580 | 0.654 | 9.7e-96 | |
| RGD|1312011 | 681 | Shmt1 "serine hydroxymethyltra | 0.751 | 0.395 | 0.676 | 2.6e-95 | |
| DICTYBASE|DDB_G0291652 | 481 | shmt2 "serine hydroxymethyltra | 0.751 | 0.559 | 0.642 | 4.2e-95 | |
| TAIR|locus:2129251 | 471 | SHM4 "serine hydroxymethyltran | 0.770 | 0.585 | 0.646 | 5.3e-95 | |
| UNIPROTKB|A8MYA6 | 446 | SHMT1 "Serine hydroxymethyltra | 0.751 | 0.603 | 0.669 | 1.1e-94 | |
| UNIPROTKB|P34896 | 483 | SHMT1 "Serine hydroxymethyltra | 0.751 | 0.556 | 0.669 | 1.1e-94 |
| TAIR|locus:2127806 SHM3 "serine hydroxymethyltransferase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1377 (489.8 bits), Expect = 8.9e-141, P = 8.9e-141
Identities = 270/351 (76%), Positives = 291/351 (82%)
Query: 1 MQACSGAAVMGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRX 60
MQAC G M SLQQP V+G P + F Q++ N+ KP R S ++ +LV+
Sbjct: 1 MQACCGGNSMASLQQPGRVQGSVFPPIMPPVTKFSQQLKFNISKPFRSSFLKRNLVSEMR 60
Query: 61 XXXXXXXIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVME 120
EI F DY LGE DPEV IITKEK+RQF+SLELIASENFTSRAVME
Sbjct: 61 ASSVSLPNVEISSKEIPFEDYGLGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVME 120
Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180
AVGSCLTNKYSEGLPGKRYYGGNEYID+LETLCQ RALAAF LD KWGVNVQPLSGSPA
Sbjct: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPA 180
Query: 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
NF VYTAIL PHDRIMGLDLPHGGHLSHGFMT KRRVSGTSIYFESMPYRLDESTG+VDY
Sbjct: 181 NFAVYTAILSPHDRIMGLDLPHGGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDY 240
Query: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300
DMLEKTA LFRPKLIIAGASAY RDFDYPRMR+IAD+VGA LMMDMAHISGLVAASVVAD
Sbjct: 241 DMLEKTATLFRPKLIIAGASAYSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVAD 300
Query: 301 PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQVG 351
PF+YCD+VTTTTHKSLRGPRGGMIFF+KDP+ GV+LESA+NNAVFPGLQ G
Sbjct: 301 PFEYCDIVTTTTHKSLRGPRGGMIFFRKDPINGVDLESAVNNAVFPGLQGG 351
|
|
| TAIR|locus:2005518 SHM1 "serine transhydroxymethyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
Identities = 189/277 (68%), Positives = 219/277 (79%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L E DPE+ +II EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGG
Sbjct: 55 LEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 114
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
NEYID ETLCQKRAL AF LD KWGVNVQPLSGSPANF VYTA+LKPH+RIM LDLPH
Sbjct: 115 NEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPH 174
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHLSHG+ T +++S SI+FE+MPYRLDESTG +DYD +EK+A LFRPKLI+AGASAY
Sbjct: 175 GGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAY 234
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R +DY R+R++ + A+++ DMAHISGLVAA+V+ PF Y DVVTTTTHKSLRGPRG
Sbjct: 235 ARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGA 294
Query: 323 MIFFKKDPV----LGVEL----ESAINNAVFPGLQVG 351
MIFF+K G E+ E IN AVFPGLQ G
Sbjct: 295 MIFFRKGVKEINKQGKEVLYDFEDKINQAVFPGLQGG 331
|
|
| TAIR|locus:2148463 SHM2 "serine hydroxymethyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
Identities = 189/278 (67%), Positives = 221/278 (79%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
SL E DPEV +II EK RQ+K ELI SENFTS +VM+AVGS +TNKYSEG PG RYYG
Sbjct: 54 SLDEIDPEVADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYG 113
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
GNEYID ETLCQKRAL AF LD +KWGVNVQ LSGSPANF+VYTA+LKPH+RIM LDLP
Sbjct: 114 GNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALDLP 173
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
HGGHLSHG+ T +++S SI+FE+MPYRLDE+TG +DYD LEK+A+LFRPKLI+AGASA
Sbjct: 174 HGGHLSHGYQTDTKKISAVSIFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAGASA 233
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y R +DY R+R++ + A+++ DMAHISGLVAA V+ PF+Y DVVTTTTHKSLRGPRG
Sbjct: 234 YARLYDYARIRKVCNKQKAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG 293
Query: 322 GMIFFKKD----PVLGVEL----ESAINNAVFPGLQVG 351
MIFF+K G E+ E IN AVFPGLQ G
Sbjct: 294 AMIFFRKGLKEINKQGKEVMYDYEDRINQAVFPGLQGG 331
|
|
| DICTYBASE|DDB_G0277947 shmt1 "serine hydroxymethyltransferase 1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
Identities = 189/285 (66%), Positives = 227/285 (79%)
Query: 75 GSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGL 134
GS + L E D E+ E++ +EK+RQFK LELIASENFTSRAVMEA+GS TNKY+EG
Sbjct: 2 GSVSGNTPLKEVDNEIFELMNREKDRQFKGLELIASENFTSRAVMEALGSHFTNKYAEGY 61
Query: 135 PGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDR 194
PG RYYGG E +DELETLCQKRAL AF LDE+KWGVNVQP SGSPANF VYTA+L+PHDR
Sbjct: 62 PGSRYYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPYSGSPANFAVYTALLRPHDR 121
Query: 195 IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKL 254
IMGLDLP GGHL+HG+ T K+++S +SI+FESMPY++ + GL+DY LE+ A+LF+PKL
Sbjct: 122 IMGLDLPSGGHLTHGYQTDKKKISASSIFFESMPYQIG-ADGLIDYQRLEENALLFKPKL 180
Query: 255 IIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHK 314
II+GASAYPR++DY RMR IAD VGA LM DMAH SGLVAA ++ PF YCDVVT+TTHK
Sbjct: 181 IISGASAYPREWDYKRMRAIADKVGAYLMCDMAHYSGLVAAQLLDSPFDYCDVVTSTTHK 240
Query: 315 SLRGPRGGMIFFKKDPVL---GVELE-----SAINNAVFPGLQVG 351
+LRGPR G+IFF++ + G E+E S IN AVFP LQ G
Sbjct: 241 TLRGPRSGIIFFRRGKRVDGNGKEIEEYDIESKINFAVFPSLQGG 285
|
|
| UNIPROTKB|E1BS67 SHMT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
Identities = 191/292 (65%), Positives = 221/292 (75%)
Query: 70 EIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNK 129
E+ S + L DPEV II KEK+RQ LELIASENF S AV+EA+GSCL NK
Sbjct: 15 ELWASHSKMLLEPLDSNDPEVYNIIKKEKQRQRLGLELIASENFASCAVLEALGSCLNNK 74
Query: 130 YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 189
YSEG PG+RYYGG E++DELE LCQKRAL AF LD KWGVNVQP SGSPANF VYTA++
Sbjct: 75 YSEGYPGQRYYGGTEFVDELERLCQKRALQAFRLDPQKWGVNVQPYSGSPANFAVYTALV 134
Query: 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL 249
+PH RIMGLDLP GGHL+HGFMT K+++S TS++FESMPY+++ TG +DYD LE+ A L
Sbjct: 135 EPHGRIMGLDLPDGGHLTHGFMTDKKKISATSVFFESMPYKVNPKTGYIDYDKLEENARL 194
Query: 250 FRPKLIIA-GASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVV 308
F PKLIIA G S Y R+ DY RMRQIA+A A LM DMAHISGLVAA VV PF++CDVV
Sbjct: 195 FHPKLIIAAGVSCYSRNLDYARMRQIANANSAYLMADMAHISGLVAAGVVPSPFEHCDVV 254
Query: 309 TTTTHKSLRGPRGGMIFFKK-----DPVLGVE----LESAINNAVFPGLQVG 351
+TTTHK+LRG R GMIF++K DP G E LES IN AVFPGLQ G
Sbjct: 255 STTTHKTLRGCRAGMIFYRKGTRSTDPKTGKETLYNLESLINQAVFPGLQGG 306
|
|
| RGD|1312011 Shmt1 "serine hydroxymethyltransferase 1 (soluble)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
Identities = 188/278 (67%), Positives = 217/278 (78%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L E+D EV II KE RQ LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 223 LKESDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 282
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E+IDELETLCQKRAL A++LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 283 TEFIDELETLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 342
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HGFMT K+++S TSI+FESMPY++ TG ++YD LE+ A LF PKLIIAG S Y
Sbjct: 343 GGHLTHGFMTDKKKISATSIFFESMPYKVYPDTGYINYDQLEENASLFHPKLIIAGTSCY 402
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R+ DY R+R+IAD GA LM DMAHISGLVAA VV PF++C VVTTTTHK+LRG R G
Sbjct: 403 SRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 462
Query: 323 MIFFKK-----DPVLG----VELESAINNAVFPGLQVG 351
MIF++K DP G ELES IN+AVFPGLQ G
Sbjct: 463 MIFYRKGVRSVDPKTGEETYYELESLINSAVFPGLQGG 500
|
|
| DICTYBASE|DDB_G0291652 shmt2 "serine hydroxymethyltransferase 2" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
Identities = 178/277 (64%), Positives = 219/277 (79%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
S+ E+DPE+ +++ KEK+RQF LELIASENFTSRAVME++GSC TNKY+EGLPG RYYG
Sbjct: 33 SVSESDPEIYDLMMKEKQRQFTGLELIASENFTSRAVMESIGSCFTNKYAEGLPGARYYG 92
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
GNE +D+LE LC KRAL FNL+ +WGVNVQP SGS ANF +T +LKPHDRIMGLDLP
Sbjct: 93 GNEVVDQLENLCIKRALETFNLNPEEWGVNVQPYSGSTANFAAFTGLLKPHDRIMGLDLP 152
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
GGHL+HG+ T K+++S TSI+FESMPY+++E TG VDY+ +E A LFRPKL+IAGASA
Sbjct: 153 SGGHLTHGYQTDKKKISATSIFFESMPYQVNE-TGYVDYNKMEANAALFRPKLLIAGASA 211
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
YPR++DY RMR+IAD GA L+ DMAHISG+VA PF +CDVVTTTTHK+LRGPR
Sbjct: 212 YPREWDYERMRKIADKHGAYLLCDMAHISGMVAGKQAISPFLFCDVVTTTTHKTLRGPRA 271
Query: 322 GMIFFKKDP-------VLGVELESAINNAVFPGLQVG 351
G+IFF+K ++ +LE+ IN AVFP Q G
Sbjct: 272 GLIFFRKTKRRDAKGNIIDDDLENRINFAVFPSCQGG 308
|
|
| TAIR|locus:2129251 SHM4 "serine hydroxymethyltransferase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
Identities = 185/286 (64%), Positives = 222/286 (77%)
Query: 76 SSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLP 135
SS+ + SL DPE+ ++I KEK RQ + +ELIASENFTS AV+EA+GS LTNKYSEG+P
Sbjct: 5 SSWGNTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGIP 64
Query: 136 GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRI 195
G RYYGGNE+IDE+E LC+ RAL AF+ D WGVNVQP SGSPANF YTA+L+PHDRI
Sbjct: 65 GNRYYGGNEFIDEIENLCRSRALEAFHCDPAAWGVNVQPYSGSPANFAAYTALLQPHDRI 124
Query: 196 MGLDLPHGGHLSHGFMTPK-RRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKL 254
MGLDLP GGHL+HG+ T +++S TSIYFES+PY+++ +TG +DYD LE+ A+ FRPKL
Sbjct: 125 MGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFTTGYIDYDKLEEKALDFRPKL 184
Query: 255 IIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHK 314
+I G SAYPRD+DY R R IAD VGALL+ DMAHISGLVAA A+PF+YCDVVTTTTHK
Sbjct: 185 LICGGSAYPRDWDYARFRAIADKVGALLLCDMAHISGLVAAQEAANPFEYCDVVTTTTHK 244
Query: 315 SLRGPRGGMIFFKKDPVL-------GV--ELESAINNAVFPGLQVG 351
SLRGPR GMIF++K P G + E IN AVFP LQ G
Sbjct: 245 SLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPALQGG 290
|
|
| UNIPROTKB|A8MYA6 SHMT1 "Serine hydroxymethyltransferase, cytosolic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
Identities = 186/278 (66%), Positives = 217/278 (78%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L ++D EV II KE RQ LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 26 LKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 85
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 86 TEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 145
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HGFMT K+++S TSI+FESMPY+++ TG ++YD LE+ A LF PKLIIAG S Y
Sbjct: 146 GGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCY 205
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R+ +Y R+R+IAD GA LM DMAHISGLVAA VV PF++C VVTTTTHK+LRG R G
Sbjct: 206 SRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 265
Query: 323 MIFFKK-----DPVLGVE----LESAINNAVFPGLQVG 351
MIF++K DP G E LES IN+AVFPGLQ G
Sbjct: 266 MIFYRKGVKSVDPKTGKEILYNLESLINSAVFPGLQGG 303
|
|
| UNIPROTKB|P34896 SHMT1 "Serine hydroxymethyltransferase, cytosolic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
Identities = 186/278 (66%), Positives = 217/278 (78%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L ++D EV II KE RQ LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 26 LKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 85
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 86 TEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 145
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HGFMT K+++S TSI+FESMPY+++ TG ++YD LE+ A LF PKLIIAG S Y
Sbjct: 146 GGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCY 205
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R+ +Y R+R+IAD GA LM DMAHISGLVAA VV PF++C VVTTTTHK+LRG R G
Sbjct: 206 SRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 265
Query: 323 MIFFKK-----DPVLGVE----LESAINNAVFPGLQVG 351
MIF++K DP G E LES IN+AVFPGLQ G
Sbjct: 266 MIFYRKGVKSVDPKTGKEILYNLESLINSAVFPGLQGG 303
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A6LBG7 | GLYA_PARD8 | 2, ., 1, ., 2, ., 1 | 0.5017 | 0.7318 | 0.6150 | yes | no |
| Q3AW18 | GLYA_SYNS9 | 2, ., 1, ., 2, ., 1 | 0.5161 | 0.7402 | 0.6177 | yes | no |
| Q3K5K9 | GLYA3_PSEPF | 2, ., 1, ., 2, ., 1 | 0.5092 | 0.7206 | 0.6187 | yes | no |
| Q64U78 | GLYA_BACFR | 2, ., 1, ., 2, ., 1 | 0.5017 | 0.7318 | 0.6150 | yes | no |
| B1I6M4 | GLYA_DESAP | 2, ., 1, ., 2, ., 1 | 0.5323 | 0.7346 | 0.6337 | yes | no |
| Q7MXW0 | GLYA_PORGI | 2, ., 1, ., 2, ., 1 | 0.5053 | 0.7318 | 0.6150 | yes | no |
| Q24MM6 | GLYA_DESHY | 2, ., 1, ., 2, ., 1 | 0.5129 | 0.7150 | 0.6139 | yes | no |
| A6Q478 | GLYA_NITSB | 2, ., 1, ., 2, ., 1 | 0.5345 | 0.7262 | 0.6265 | yes | no |
| Q47MD6 | GLYA_THEFY | 2, ., 1, ., 2, ., 1 | 0.5177 | 0.7458 | 0.6312 | yes | no |
| Q8R887 | GLYA_THETN | 2, ., 1, ., 2, ., 1 | 0.5311 | 0.7206 | 0.6246 | yes | no |
| B2RGR2 | GLYA_PORG3 | 2, ., 1, ., 2, ., 1 | 0.5053 | 0.7318 | 0.6150 | yes | no |
| B0TI64 | GLYA_HELMI | 2, ., 1, ., 2, ., 1 | 0.5163 | 0.7262 | 0.6295 | yes | no |
| O66776 | GLYA_AQUAE | 2, ., 1, ., 2, ., 1 | 0.5272 | 0.7262 | 0.6074 | yes | no |
| Q5LD58 | GLYA_BACFN | 2, ., 1, ., 2, ., 1 | 0.5017 | 0.7318 | 0.6150 | yes | no |
| Q4K4P6 | GLYA2_PSEF5 | 2, ., 1, ., 2, ., 1 | 0.5166 | 0.7206 | 0.6187 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.2 | 0.766 |
| 4th Layer | 2.1.2.1 | 0.824 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 358 | |||
| PLN03226 | 475 | PLN03226, PLN03226, serine hydroxymethyltransferas | 0.0 | |
| PTZ00094 | 452 | PTZ00094, PTZ00094, serine hydroxymethyltransferas | 0.0 | |
| pfam00464 | 380 | pfam00464, SHMT, Serine hydroxymethyltransferase | 1e-161 | |
| cd00378 | 402 | cd00378, SHMT, Serine-glycine hydroxymethyltransfe | 1e-159 | |
| PLN02271 | 586 | PLN02271, PLN02271, serine hydroxymethyltransferas | 1e-147 | |
| COG0112 | 413 | COG0112, GlyA, Glycine/serine hydroxymethyltransfe | 1e-145 | |
| PRK00011 | 416 | PRK00011, glyA, serine hydroxymethyltransferase; R | 1e-140 | |
| PRK13034 | 416 | PRK13034, PRK13034, serine hydroxymethyltransferas | 1e-126 | |
| PRK13580 | 493 | PRK13580, PRK13580, serine hydroxymethyltransferas | 6e-76 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 2e-27 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 1e-04 |
| >gnl|CDD|215639 PLN03226, PLN03226, serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 588 bits (1519), Expect = 0.0
Identities = 215/291 (73%), Positives = 237/291 (81%), Gaps = 8/291 (2%)
Query: 69 PEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTN 128
+ + + L E DPE+ +II KEK RQ+K LELIASENFTSRAVMEA+GSCLTN
Sbjct: 1 EKSMVSVPKWGNAPLEEVDPEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTN 60
Query: 129 KYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188
KYSEGLPG RYYGGNEYID++ETLCQKRAL AF LD KWGVNVQPLSGSPANF VYTA+
Sbjct: 61 KYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTAL 120
Query: 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI 248
L+PHDRIMGLDLPHGGHLSHG+ T +++S TSIYFESMPYRLDESTGL+DYD LEK A+
Sbjct: 121 LQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAM 180
Query: 249 LFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVV 308
LFRPKLIIAGASAYPRD+DY RMR+IAD VGALLM DMAHISGLVAA A PF+YCDVV
Sbjct: 181 LFRPKLIIAGASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVV 240
Query: 309 TTTTHKSLRGPRGGMIFFKKDPVLG--------VELESAINNAVFPGLQVG 351
TTTTHKSLRGPRGGMIFF+K P + E IN AVFPGLQ G
Sbjct: 241 TTTTHKSLRGPRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGG 291
|
Length = 475 |
| >gnl|CDD|240264 PTZ00094, PTZ00094, serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 525 bits (1355), Expect = 0.0
Identities = 191/270 (70%), Positives = 223/270 (82%), Gaps = 3/270 (1%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
SL EADPE+ E+I KEKERQ + LELIASENFTSRAV+E +GSC TNKY+EGLPG RYYG
Sbjct: 14 SLKEADPELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYG 73
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
GNE +D++E LCQKRAL AF LD +WGVNVQP SGSPANF VYTA+L+PHDRIMGLDLP
Sbjct: 74 GNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLP 133
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
GGHL+HGF T K++VS TSIYFES+PY+++E GL+DYD LE+ A FRPKLIIAGASA
Sbjct: 134 SGGHLTHGFYTAKKKVSATSIYFESLPYQVNE-KGLIDYDKLEELAKAFRPKLIIAGASA 192
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
YPRD DY R R+I D+VGA LM D+AH SGLVAA V+ PF Y DVVTTTTHKSLRGPR
Sbjct: 193 YPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRS 252
Query: 322 GMIFFKKDPVLGVELESAINNAVFPGLQVG 351
G+IF++K + ++E+ IN AVFPGLQ G
Sbjct: 253 GLIFYRKK--VKPDIENKINEAVFPGLQGG 280
|
Length = 452 |
| >gnl|CDD|189558 pfam00464, SHMT, Serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Score = 456 bits (1174), Expect = e-161
Identities = 179/269 (66%), Positives = 206/269 (76%), Gaps = 12/269 (4%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L ++DPE+ +II KEKERQ + +ELIASENFTSRAVMEA+GS LTNKY+EG PGKRYYGG
Sbjct: 1 LSDSDPEIFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYAEGYPGKRYYGG 60
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+DE+ETL Q RA F LD GVNVQPLSGS AN VYTA+L P DRIMGLDLPH
Sbjct: 61 CEYVDEVETLAQDRAKELFGLD----GVNVQPLSGSQANLAVYTALLNPGDRIMGLDLPH 116
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG+ + +FESMPY +D TGL+DYD LEK A LF+PKLI+AG SAY
Sbjct: 117 GGHLTHGYPVNF-----SGKFFESMPYGVDPDTGLIDYDQLEKNAKLFKPKLIVAGTSAY 171
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R DY R R+IAD VGA LM+DMAHI+GLVAA V+ PF Y VVTTTTHK+LRGPRGG
Sbjct: 172 SRLIDYARFREIADEVGAYLMVDMAHIAGLVAAGVIPSPFPYAHVVTTTTHKTLRGPRGG 231
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQVG 351
MIFF++ ELE IN+AVFPGLQ G
Sbjct: 232 MIFFREIL---YELEKKINSAVFPGLQGG 257
|
Length = 380 |
| >gnl|CDD|99733 cd00378, SHMT, Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Score = 450 bits (1160), Expect = e-159
Identities = 163/267 (61%), Positives = 195/267 (73%), Gaps = 12/267 (4%)
Query: 85 EADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNE 144
+ DPE+ EII KE ERQ ++LELIASENFTS AVMEA+GS LTNKY+EG PGKRYYGG E
Sbjct: 2 DVDPEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCE 61
Query: 145 YIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGG 204
Y+DE+E L +RA F + NVQP SGS AN VY A+L+P D IMGLDL HGG
Sbjct: 62 YVDEIEDLAIERAKKLFGAE----YANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGG 117
Query: 205 HLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR 264
HL+HG T +VS + FES+PY +D TGL+DYD LEK A+ F+PKLI+AGASAYPR
Sbjct: 118 HLTHGSFT---KVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYPR 174
Query: 265 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMI 324
D+ R R+IAD VGA L++DMAH++GLVA V +P DVVTTTTHK+LRGPRGG+I
Sbjct: 175 PIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLI 234
Query: 325 FFKKDPVLGVELESAINNAVFPGLQVG 351
+K EL IN+AVFPGLQ G
Sbjct: 235 LTRKG-----ELAKKINSAVFPGLQGG 256
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. Length = 402 |
| >gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Score = 427 bits (1100), Expect = e-147
Identities = 177/287 (61%), Positives = 217/287 (75%), Gaps = 15/287 (5%)
Query: 80 DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRY 139
+ L EADP++ E++ KEK+RQFK +ELIASENF RAVMEA+GS LTNKYSEG+PG RY
Sbjct: 126 NQPLPEADPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARY 185
Query: 140 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD 199
Y GN+YID++E LC +RALAAF LD KWGVNVQP S + ANF VYT +L P DRIMGLD
Sbjct: 186 YTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLD 245
Query: 200 LPHGGHLSHGFMTPK-RRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258
P GGH+SHG+ TP ++VSG SI+FES+PY+++ TG +DYD LE+ A+ FRPK++I G
Sbjct: 246 SPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICG 305
Query: 259 ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG 318
S+YPR++DY R RQIAD GA+LM DMAHISGLVAA +PF YCD+VT+TTHKSLRG
Sbjct: 306 GSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRG 365
Query: 319 PRGGMIFFKKDPVL---------GVE-----LESAINNAVFPGLQVG 351
PRGG+IF++K P L G + E IN AVFP LQ G
Sbjct: 366 PRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGG 412
|
Length = 586 |
| >gnl|CDD|223190 COG0112, GlyA, Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 417 bits (1074), Expect = e-145
Identities = 154/275 (56%), Positives = 186/275 (67%), Gaps = 14/275 (5%)
Query: 77 SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPG 136
S SL + DPE+ E I +E ERQ + +ELIASENFTS AVMEA GS LTNKY+EG PG
Sbjct: 1 SRSYASLADYDPEIFEAIQQELERQREHIELIASENFTSPAVMEAQGSDLTNKYAEGYPG 60
Query: 137 KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIM 196
KRYYGG EY+DE+E L +RA F + NVQP SGS AN VY A+L+P D IM
Sbjct: 61 KRYYGGCEYVDEVEELAIERAKKLFGAE----YANVQPHSGSQANQAVYLALLQPGDTIM 116
Query: 197 GLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 256
GLDL HGGHL+HG V+ + F + Y +D TGL+DYD +EK A +PKLII
Sbjct: 117 GLDLSHGGHLTHG-----SPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLII 171
Query: 257 AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL 316
AG SAY R D+ R R+IAD VGA LM+DMAH++GL+A V +P + DVVTTTTHK+L
Sbjct: 172 AGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTL 231
Query: 317 RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQVG 351
RGPRGG+I + EL IN+AVFPGLQ G
Sbjct: 232 RGPRGGIILTNDE-----ELAKKINSAVFPGLQGG 261
|
Length = 413 |
| >gnl|CDD|234571 PRK00011, glyA, serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 404 bits (1042), Expect = e-140
Identities = 151/270 (55%), Positives = 185/270 (68%), Gaps = 14/270 (5%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
+L E DPE+ + I +E +RQ + +ELIASENF S AVMEA GS LTNKY+EG PGKRYYG
Sbjct: 5 NLAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYG 64
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G EY+D +E L RA F + NVQP SGS AN VY A+LKP D I+G+DL
Sbjct: 65 GCEYVDVVEQLAIDRAKELFGAEY----ANVQPHSGSQANAAVYFALLKPGDTILGMDLA 120
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
HGGHL+HG V+ + + + Y +DE TGL+DYD +EK A+ +PKLIIAGASA
Sbjct: 121 HGGHLTHG-----SPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASA 175
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y R D+ R R+IAD VGA LM+DMAHI+GLVAA V P + DVVTTTTHK+LRGPRG
Sbjct: 176 YSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRG 235
Query: 322 GMIFFKKDPVLGVELESAINNAVFPGLQVG 351
G+I + EL IN+AVFPG+Q G
Sbjct: 236 GLILTNDE-----ELAKKINSAVFPGIQGG 260
|
Length = 416 |
| >gnl|CDD|237280 PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 367 bits (945), Expect = e-126
Identities = 157/276 (56%), Positives = 188/276 (68%), Gaps = 14/276 (5%)
Query: 76 SSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLP 135
F SL E D EV I KE ERQ LELIASENFTS AVMEA GS LTNKY+EG P
Sbjct: 2 MFFFSDSLEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYP 61
Query: 136 GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRI 195
GKRYYGG E++DE+E L +RA F D NVQP SGS AN VY A+LKP D I
Sbjct: 62 GKRYYGGCEFVDEVEALAIERAKQLFGCDY----ANVQPHSGSQANGAVYLALLKPGDTI 117
Query: 196 MGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 255
+G+ L HGGHL+HG +VS + ++ ++ Y +D TGL+DYD +E+ A +PKLI
Sbjct: 118 LGMSLSHGGHLTHG-----AKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLI 172
Query: 256 IAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKS 315
IAG SAYPR+ D+ R R+IAD VGALLM+DMAHI+GLVAA +PF + VVTTTTHK+
Sbjct: 173 IAGFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKT 232
Query: 316 LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQVG 351
LRGPRGGMI + E+ IN+AVFPGLQ G
Sbjct: 233 LRGPRGGMILTNDE-----EIAKKINSAVFPGLQGG 263
|
Length = 416 |
| >gnl|CDD|184161 PRK13580, PRK13580, serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 241 bits (618), Expect = 6e-76
Identities = 112/295 (37%), Positives = 159/295 (53%), Gaps = 49/295 (16%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
+ +P + E I +E Q SL+LIASEN++S AV A+G+ LT+KY+EG PG R+Y G
Sbjct: 30 ILHVEPRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAG 89
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH---------- 192
+ +D +E + A F + VQP SG+ AN + AIL
Sbjct: 90 CQNVDTVEWEAAEHAKELFGAEH----AYVQPHSGADANLVAFWAILAHKVESPALEKLG 145
Query: 193 ---------------------DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231
R++G+ L GGHL+HGF R + + F Y +
Sbjct: 146 AKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGF-----RPNISGKMFHQRSYGV 200
Query: 232 DESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISG 291
D TGL+DYD + A F+P +++AG SAYPR ++ ++R+IAD VGA+LM+DMAH +G
Sbjct: 201 DPDTGLLDYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAG 260
Query: 292 LVAASVVA---DPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNA 343
LVA V DP + D+VTTTTHK+LRGPRGG++ KK E A++
Sbjct: 261 LVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKK------EYADAVDKG 309
|
Length = 493 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-27
Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 15/182 (8%)
Query: 149 LETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSH 208
+++ P SG+ AN A+L P D ++ HG
Sbjct: 1 KLEELEEKLARLLQ--PGNDKAVFVP-SGTGANEAALLALLGPGDEVIVDANGHGSRY-- 55
Query: 209 GFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 267
V+ + +P +D++ G +D +LE+ LI+ +
Sbjct: 56 -------WVAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVL 108
Query: 268 YP--RMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIF 325
P +R+IA G LL++D A G A V P DVVT + HK+L G GG++
Sbjct: 109 VPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVI 168
Query: 326 FK 327
K
Sbjct: 169 VK 170
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 266 FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMI 324
+ ++A GAL+++D A +G + V CD + + HK L GP G G++
Sbjct: 179 NPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQEL---GCDFLAFSGHKWLLGPTGIGVL 235
Query: 325 FFKKD 329
+ +K+
Sbjct: 236 YVRKE 240
|
Length = 405 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 358 | |||
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 100.0 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 100.0 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 100.0 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 100.0 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 100.0 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 100.0 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 100.0 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 100.0 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 100.0 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 100.0 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.92 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.88 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.87 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.86 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.86 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.85 | |
| PLN02651 | 364 | cysteine desulfurase | 99.84 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.84 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.83 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.83 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.82 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.82 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.82 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.82 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.81 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.81 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.81 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.81 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.81 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.81 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.81 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.8 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.8 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.8 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.8 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.79 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.79 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.79 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.79 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.79 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.79 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.79 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.78 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.78 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.78 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.78 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.78 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.78 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.78 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.78 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.78 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.77 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.77 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.77 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.77 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.77 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.77 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.77 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.76 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.76 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.76 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.76 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.76 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.76 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.76 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.76 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.76 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.76 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.76 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.75 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.75 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.75 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.75 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.74 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.74 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.74 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.74 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.74 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.74 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.74 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.74 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.73 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.73 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.73 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.73 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.73 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.73 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.73 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.73 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.73 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.72 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.72 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.72 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.72 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.72 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.72 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.72 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.72 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.71 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.71 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.71 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.71 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.71 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.71 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.71 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.7 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.7 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.7 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.7 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.7 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.7 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.7 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.69 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.69 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.69 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.69 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.69 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.69 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.68 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.68 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.68 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.68 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.68 | |
| PLN02721 | 353 | threonine aldolase | 99.68 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.67 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.67 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.67 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.67 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.67 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.67 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.67 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.67 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.66 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.66 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.66 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.66 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.65 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.65 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.65 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.65 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.65 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.65 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.64 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.64 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.64 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.63 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.63 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.63 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.63 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.63 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.62 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.62 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.62 | |
| PRK07324 | 373 | transaminase; Validated | 99.62 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.62 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.62 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.61 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.61 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.61 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.61 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.61 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.61 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.61 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.61 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.6 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.6 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.6 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.59 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.59 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.59 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.59 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.59 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.59 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.58 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.58 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.58 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.58 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.58 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.58 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.58 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.58 | |
| PLN02656 | 409 | tyrosine transaminase | 99.57 | |
| PLN02368 | 407 | alanine transaminase | 99.57 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.57 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.57 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.56 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.56 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.56 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.55 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.55 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.55 | |
| PLN02187 | 462 | rooty/superroot1 | 99.55 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.55 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.55 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.55 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.55 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.54 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.53 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.53 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.53 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.53 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.53 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.53 | |
| PLN02231 | 534 | alanine transaminase | 99.52 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.51 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.51 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.51 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.51 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.5 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.5 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.5 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.5 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.49 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.49 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.49 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.48 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.47 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.47 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.46 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.46 | |
| PLN02263 | 470 | serine decarboxylase | 99.46 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.46 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.46 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.45 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.45 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.45 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.45 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.44 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.44 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.44 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.44 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.43 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.43 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.42 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.42 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.41 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.41 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.41 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.4 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.4 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.4 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.38 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.38 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.38 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.37 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.36 | |
| PLN02397 | 423 | aspartate transaminase | 99.36 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.36 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.35 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.35 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.35 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.35 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.33 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.32 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.32 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.31 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 99.31 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.31 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.28 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.26 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.25 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.24 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.24 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.23 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.23 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.22 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.22 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.21 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.2 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.2 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.2 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.2 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.2 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.18 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 99.18 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.16 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.15 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.14 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.13 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.11 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.11 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.09 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.07 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.07 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.04 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.03 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.03 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.02 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.02 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 98.99 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 98.98 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 98.96 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 98.94 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 98.86 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 98.82 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 98.82 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 98.82 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 98.8 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 98.77 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 98.77 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.75 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 98.74 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 98.72 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 98.7 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 98.69 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 98.65 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 98.64 | |
| PLN00144 | 382 | acetylornithine transaminase | 98.63 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.63 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.6 | |
| PRK07046 | 453 | aminotransferase; Validated | 98.59 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 98.56 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.54 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 98.52 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.51 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 98.5 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.48 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 98.48 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 98.47 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 98.47 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 98.46 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 98.45 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 98.44 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 98.44 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.42 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 98.42 | |
| PRK06105 | 460 | aminotransferase; Provisional | 98.4 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 98.39 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 98.38 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 98.38 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.37 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 98.34 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 98.34 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 98.33 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 98.33 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 98.32 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 98.3 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 98.3 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.3 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 98.28 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.28 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 98.28 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 98.28 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.27 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 98.23 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 98.22 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 98.15 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 98.14 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 98.13 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.12 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.12 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 98.11 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 98.09 | |
| PRK07678 | 451 | aminotransferase; Validated | 98.08 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.06 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.06 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.06 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.06 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 98.03 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 97.99 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 97.99 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 97.93 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 97.9 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 97.9 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 97.89 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 97.87 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 97.86 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 97.85 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 97.85 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 97.8 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 97.76 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.69 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 97.67 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 97.66 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 97.65 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 97.65 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 97.6 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 97.52 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 97.51 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 97.43 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 97.42 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 97.41 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 97.37 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 97.3 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 97.2 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 97.04 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 96.98 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 96.42 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 96.04 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 95.38 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 94.16 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 93.86 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 92.91 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 90.75 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 85.28 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 82.59 |
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-75 Score=548.83 Aligned_cols=282 Identities=71% Similarity=1.134 Sum_probs=273.4
Q ss_pred cchhcccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHH
Q 018300 76 SSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK 155 (358)
Q Consensus 76 ~~~~~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~ 155 (358)
..+...+|.+.|||++++|++|+.||+++|+||||||++|.+|+||++++++|+|+|||||.|||+|++++|++|.+|++
T Consensus 14 ~~~~~~~l~~~DPev~~ii~~Ek~RQ~~gieLIaSENFts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~ 93 (477)
T KOG2467|consen 14 IKLGNTPLEEVDPEVHDIIEKEKERQKRGIELIASENFTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQK 93 (477)
T ss_pred hhhhcCchhhcChHHHHHHHHHHHhhhcceeEeecccchHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC
Q 018300 156 RALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST 235 (358)
Q Consensus 156 ~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 235 (358)
|+.+.||++++.|||||++.||+.||++++.++++|+|+||.+|+++|||++|||+++.++++..+.+|+.+||.+|+++
T Consensus 94 RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~T 173 (477)
T KOG2467|consen 94 RALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPST 173 (477)
T ss_pred HHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred CCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCc
Q 018300 236 GLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKS 315 (358)
Q Consensus 236 ~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~ 315 (358)
|.||||.||+.+..+|||+||.+.|.|++.+|++++++||++.|++|++|+||.+|+++.++.|+||++||||++++||+
T Consensus 174 G~IDYD~Le~~A~~frPk~iiaG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHKs 253 (477)
T KOG2467|consen 174 GYIDYDKLEKTATLFRPKLIIAGTSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHKS 253 (477)
T ss_pred CceehHHHHHHHHhcCCcEEEeccccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCcEEEEEEeCCCC---------chhHHHHHHhhccCCccccccccccc
Q 018300 316 LRGPRGGMIFFKKDPV---------LGVELESAINNAVFPGLQVGFVSYVF 357 (358)
Q Consensus 316 L~Gp~GG~I~~~~~~~---------~~~~~~~~i~~~~f~g~q~~~~~~~~ 357 (358)
|+|||||+|++++... ..|+++++|++++||++|||||+|.|
T Consensus 254 LRGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtI 304 (477)
T KOG2467|consen 254 LRGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTI 304 (477)
T ss_pred ccCCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchH
Confidence 9999999999998632 36899999999999999999999976
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-70 Score=523.02 Aligned_cols=263 Identities=59% Similarity=0.889 Sum_probs=256.3
Q ss_pred ccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~l 160 (358)
..|.+.||+++++|++|..||+..|+||+|||++|+.|++|+++.++|||+|||||.|||+||+++|++|.+|.+|++++
T Consensus 5 ~~l~~~d~~i~~~i~~e~~rq~~~ieLIASEN~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~L 84 (413)
T COG0112 5 ASLADYDPEIFEAIQQELERQREHIELIASENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKL 84 (413)
T ss_pred hhHHhcCHHHHHHHHHHHHHHhhceeeeeccccCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCH
Q 018300 161 FNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240 (358)
Q Consensus 161 fg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~ 240 (358)
||+++ +||+|.||+.||.+++.++++|||+||.+++.||||++|+. ++.++|..|+.++|++|++++.|||
T Consensus 85 Fga~~----anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg~-----~v~~sG~~~~~v~Y~vd~et~~IDy 155 (413)
T COG0112 85 FGAEY----ANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGS-----PVNFSGKLFNVVSYGVDPETGLIDY 155 (413)
T ss_pred hCCCc----cccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCCC-----CCCccceeEEeEecccccccCccCH
Confidence 99998 58999999999999999999999999999999999999985 6788999999999999999999999
Q ss_pred HHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCc
Q 018300 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPR 320 (358)
Q Consensus 241 d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~ 320 (358)
|++++++.+++||+|+++.|.|++.+|++++++||+++|++|++|+||.+||+++|.+|+|+++||++++||||||+|||
T Consensus 156 D~~~k~a~e~kPK~ii~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~AdvVTtTTHKTlrGPr 235 (413)
T COG0112 156 DEVEKLAKEVKPKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPR 235 (413)
T ss_pred HHHHHHHHHhCCCEEEECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCccceEeCCcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCccccccccccc
Q 018300 321 GGMIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357 (358)
Q Consensus 321 GG~I~~~~~~~~~~~~~~~i~~~~f~g~q~~~~~~~~ 357 (358)
||+|+++++ ++.++|++++|||.|||||+|+|
T Consensus 236 GG~Il~~~e-----el~kkin~aVFPg~qggpl~Hvi 267 (413)
T COG0112 236 GGIILTNDE-----ELAKKINSAVFPGLQGGPLMHVI 267 (413)
T ss_pred ceEEEeccH-----HHHHHhhhhcCCccCCChHHHHH
Confidence 999999986 89999999999999999999986
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=501.79 Aligned_cols=279 Identities=63% Similarity=1.067 Sum_probs=260.4
Q ss_pred hcccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHH
Q 018300 79 VDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (358)
Q Consensus 79 ~~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la 158 (358)
..+.|++.||+++++|++|+.||+++|+||||||++|+.|+++++++++|+|+|||||.|||+|++++|++|.+|++|++
T Consensus 125 ~~~~l~~~Dpei~~li~~E~~rQ~~~l~LIASEN~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~ 204 (586)
T PLN02271 125 GNQPLPEADPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERAL 204 (586)
T ss_pred HhccHhhhCHHHHHHHHHHHHHHhcCeeeccccccCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccc-hhccccCCceEEEEeceecCCCCC
Q 018300 159 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP-KRRVSGTSIYFESMPYRLDESTGL 237 (358)
Q Consensus 159 ~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~ 237 (358)
++||+++++|++||++.||+.||++++.++++|||+||.++++||||++|++++. ...+...|..++.++|+++++++.
T Consensus 205 ~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~ 284 (586)
T PLN02271 205 AAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGY 284 (586)
T ss_pred HHhCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCc
Confidence 9999999899999999999999999999999999999999999999999987542 134567888999999999988999
Q ss_pred CCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCc
Q 018300 238 VDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLR 317 (358)
Q Consensus 238 iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~ 317 (358)
||+|++++.+..++||+|+++.+.|++.+|+++|+++|+++|++|++|+||++|+++.+.+++|+++||++++|+||||+
T Consensus 285 IDyd~lek~a~~~rPKLII~g~Saypr~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLr 364 (586)
T PLN02271 285 IDYDKLEEKALDFRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLR 364 (586)
T ss_pred cCHHHHHHHhhhcCCeEEEECchhccCcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCC
Confidence 99999999777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEeCCCC--------------chhHHHHHHhhccCCccccccccccc
Q 018300 318 GPRGGMIFFKKDPV--------------LGVELESAINNAVFPGLQVGFVSYVF 357 (358)
Q Consensus 318 Gp~GG~I~~~~~~~--------------~~~~~~~~i~~~~f~g~q~~~~~~~~ 357 (358)
||+||+|+++++.. ..+++.++|++++||++|+|||+|.|
T Consensus 365 GPrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~I 418 (586)
T PLN02271 365 GPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHI 418 (586)
T ss_pred CCCceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHH
Confidence 99999999986411 23578999999999999999999975
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=496.07 Aligned_cols=275 Identities=57% Similarity=0.927 Sum_probs=226.1
Q ss_pred ccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC
Q 018300 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN 162 (358)
Q Consensus 83 l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg 162 (358)
|++.||+++++|++|.+||+++|+||||||++||.|++++++.+.|+|+|||||.|||+|++++|++|++|+++++++||
T Consensus 1 l~~~d~ei~~li~~e~~rq~~~l~LiaSEN~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~ 80 (399)
T PF00464_consen 1 LKEFDPEIYELIEKEEERQRSTLNLIASENYMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFG 80 (399)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHSEE-CTT-----HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHHhcCccccCcccccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHH
Q 018300 163 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM 242 (358)
Q Consensus 163 ~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~ 242 (358)
+++++|.++|++.||+.||++++.+|++|||+||.+++.+|||++|+.....+++...+..++.++|+++++++.||+|+
T Consensus 81 ~~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~ 160 (399)
T PF00464_consen 81 AEPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDE 160 (399)
T ss_dssp -STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHH
T ss_pred CCcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHH
Confidence 99999999999999999999999999999999999999999999999865444445577889999999999999999999
Q ss_pred HHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcEE
Q 018300 243 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322 (358)
Q Consensus 243 le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~GG 322 (358)
++++++.++||+|+++.|+|++.+|+++|++||+++|++|++|+||.+||+++|.+|+||++||++++||||+|+|||||
T Consensus 161 l~~~a~~~kPklIi~G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~sThKtl~GPrgg 240 (399)
T PF00464_consen 161 LEKLAKEHKPKLIICGASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYADVVTGSTHKTLRGPRGG 240 (399)
T ss_dssp HHHHHHHH--SEEEEE-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSEEEEESSGGG-SSS-E
T ss_pred HHHHHhhcCCCEEEECchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCccccceEEEeeccccccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCC--------chhHHHHHHhhccCCccccccccccc
Q 018300 323 MIFFKKDPV--------LGVELESAINNAVFPGLQVGFVSYVF 357 (358)
Q Consensus 323 ~I~~~~~~~--------~~~~~~~~i~~~~f~g~q~~~~~~~~ 357 (358)
+|+++++.. .-++++++|++++||++|+|||+|.|
T Consensus 241 iI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~i 283 (399)
T PF00464_consen 241 IILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRI 283 (399)
T ss_dssp EEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHH
T ss_pred EEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHH
Confidence 999992100 01389999999999999999999975
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-52 Score=418.08 Aligned_cols=261 Identities=44% Similarity=0.727 Sum_probs=242.5
Q ss_pred ccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~l 160 (358)
..|++.||+++++|++|+.||+++|+||||||++|+.|++++++.++|+|+|||||.|||+|++++|++|.+|.+|++++
T Consensus 28 ~~l~~~d~~~~~~~~~e~~rq~~~l~LiasEN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~l 107 (493)
T PRK13580 28 DVILHVEPRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKEL 107 (493)
T ss_pred HHHHhhCHHHHHHHHHHHHHHhcCceEecccccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcceEEeCCCHHHHHHHHHHhccC-------------------------------CCEEEecCCCCCcccccc
Q 018300 161 FNLDENKWGVNVQPLSGSPANFEVYTAILKP-------------------------------HDRIMGLDLPHGGHLSHG 209 (358)
Q Consensus 161 fg~~~~~~~v~V~~~SGt~A~~~a~~all~p-------------------------------GD~Vl~~~~~~ggh~s~~ 209 (358)
||+++ +||++.||+.||++++.++++| ||+|+.+++.+|||++|+
T Consensus 108 f~a~~----anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg 183 (493)
T PRK13580 108 FGAEH----AYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHG 183 (493)
T ss_pred hCCCc----ccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecC
Confidence 99998 5899999999999999999987 899999999999999998
Q ss_pred cccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEecccc
Q 018300 210 FMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHI 289 (358)
Q Consensus 210 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~ 289 (358)
+ ...+.+..++..+|+++++++.+|++++++++...+|++++.+.|++++..|+++|+++|+++|+++++|+||+
T Consensus 184 ~-----~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~~~~~dl~~i~eia~~~gA~L~VD~AH~ 258 (493)
T PRK13580 184 F-----RPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHF 258 (493)
T ss_pred c-----ccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCccccCCCcCHHHHHHHHHHcCCEEEEECchh
Confidence 6 44677888889999999888999999999999888888999999999999999999999999999999999999
Q ss_pred ccccccCCcc---CCCCCCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHHhhccCCccccccccccc
Q 018300 290 SGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357 (358)
Q Consensus 290 ~Gl~~~g~~~---~pl~gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~~~~f~g~q~~~~~~~~ 357 (358)
+|++..+..+ ++++++|++++|+||+|+||+||+|++++ ++.+.|+++. |+++++||+|.+
T Consensus 259 ~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~GG~I~~~~------~l~~~L~~a~-P~i~gg~l~p~i 322 (493)
T PRK13580 259 AGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKK------EYADAVDKGC-PLVLGGPLPHVM 322 (493)
T ss_pred hceeccccchhhcCCCCCCcEEEeCChhhccCCCeEEEEecH------HHHHHHhhCC-CcccCCCccHHH
Confidence 9999866544 56669999999999999999999999987 6888888774 899999999864
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-51 Score=413.28 Aligned_cols=280 Identities=77% Similarity=1.217 Sum_probs=252.5
Q ss_pred hhcccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHH
Q 018300 78 FVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (358)
Q Consensus 78 ~~~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~l 157 (358)
++...|++.||+++++|++|..||+++|+||||||++|+.|++++++.++++|++|+||+|||+|+++++++|++|++++
T Consensus 10 ~~~~~~~~~d~~~~~~i~~e~~~q~~~l~liasen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~ 89 (475)
T PLN03226 10 WGNAPLEEVDPEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRA 89 (475)
T ss_pred cchhhhhhcCHHHHHHHHHHHHHHHcCeeEecCCccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHH
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCC
Q 018300 158 LAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL 237 (358)
Q Consensus 158 a~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 237 (358)
+++|+.+++.|.++++++||+.||.+++.++++|||+|++++..+|||++|++......+...+..++.++|.++++++.
T Consensus 90 ~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~ 169 (475)
T PLN03226 90 LEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGL 169 (475)
T ss_pred HHHhCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCC
Confidence 99999998888788999999999999999999999999999999999999987543333445566677778888888899
Q ss_pred CCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCc
Q 018300 238 VDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLR 317 (358)
Q Consensus 238 iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~ 317 (358)
+|+++|++++..++||+|+++.++|++..|+++|.++|+++|+++++|+||++|++..+..++|++++|++++|+||||+
T Consensus 170 iD~d~Le~~l~~~~pklIv~~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~ 249 (475)
T PLN03226 170 IDYDKLEKKAMLFRPKLIIAGASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLR 249 (475)
T ss_pred cCHHHHHHHHhhcCCeEEEEecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCccccc
Confidence 99999999987778999988888899999999999999999999999999999999887777888899999999999999
Q ss_pred cCcEEEEEEeCCCC--------chhHHHHHHhhccCCccccccccccc
Q 018300 318 GPRGGMIFFKKDPV--------LGVELESAINNAVFPGLQVGFVSYVF 357 (358)
Q Consensus 318 Gp~GG~I~~~~~~~--------~~~~~~~~i~~~~f~g~q~~~~~~~~ 357 (358)
||+||+|+++++.+ ...++.++++.+.||+++++||+|.+
T Consensus 250 GP~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~i 297 (475)
T PLN03226 250 GPRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTI 297 (475)
T ss_pred CCCceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHH
Confidence 99999999987532 11256668899999999999998865
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=359.64 Aligned_cols=276 Identities=69% Similarity=1.137 Sum_probs=238.9
Q ss_pred hcccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHH
Q 018300 79 VDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (358)
Q Consensus 79 ~~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la 158 (358)
+...|++.||++++++.+|.++|+++|+||||||++||.|++++.+.++++|++|+|+++|+.|.+..+++|+.++++++
T Consensus 11 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~l~~sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a 90 (452)
T PTZ00094 11 LNQSLKEADPELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRAL 90 (452)
T ss_pred hhhhHhhhCHHHHHHHHHHHHHHHcCeeEecccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHH
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCC
Q 018300 159 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 238 (358)
Q Consensus 159 ~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 238 (358)
++||+++++|.++++++||+.||.+++.++++|||+|++.+.+|++|++++...........+..++..++++++ ++.+
T Consensus 91 ~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~g~i 169 (452)
T PTZ00094 91 EAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNE-KGLI 169 (452)
T ss_pred HHhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCC-CCCc
Confidence 999998877666777889999999999999999999999999999999875321101112334556667777775 4899
Q ss_pred CHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCcc
Q 018300 239 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG 318 (358)
Q Consensus 239 D~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~G 318 (358)
|++++++.++..++++|+++.+++|...|+++|.++|+++|+++++|++|++|++..+..+.+++++|++++|+||||+|
T Consensus 170 d~~~L~~~l~~~~~~lvi~~~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~G 249 (452)
T PTZ00094 170 DYDKLEELAKAFRPKLIIAGASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRG 249 (452)
T ss_pred CHHHHHHHHHHhCCCEEEEeCCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCC
Confidence 99999999876688988887788999999999999999999999999999999987776666777999999999999999
Q ss_pred CcEEEEEEeCCCCchhHHHHHHhhccCCccccccccccc
Q 018300 319 PRGGMIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357 (358)
Q Consensus 319 p~GG~I~~~~~~~~~~~~~~~i~~~~f~g~q~~~~~~~~ 357 (358)
|+||+++++++.. ..+..+++...||.++|+|+.+.+
T Consensus 250 P~Gg~l~~~~~~~--~~l~~~~~~~~~p~~~G~~~~~~i 286 (452)
T PTZ00094 250 PRSGLIFYRKKVK--PDIENKINEAVFPGLQGGPHNHQI 286 (452)
T ss_pred CCceEEEEecccc--hHHHHhhccccCCCCCCCchHHHH
Confidence 9999999987522 135667777889999999987653
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=334.54 Aligned_cols=266 Identities=59% Similarity=0.890 Sum_probs=233.5
Q ss_pred chhcccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHH
Q 018300 77 SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKR 156 (358)
Q Consensus 77 ~~~~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~ 156 (358)
.|+++.|++.||+++++|++|..+|.+.++|+||||+++|.|++++.+.+.++|..|++|+|+++|++.++++|+.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~ 82 (416)
T PRK13034 3 FFFSDSLEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIER 82 (416)
T ss_pred chhhhhHhhhCHHHHHHHHHHHHHHhcCeeecccccCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999998899999999999999999999999989999
Q ss_pred HHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCC
Q 018300 157 ALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 236 (358)
Q Consensus 157 la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 236 (358)
++++||.++ +.+.+.||+.||.+++.++++|||+|++.+..|++++.++. .....+..++...+++++.++
T Consensus 83 la~l~g~~~----alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~ 153 (416)
T PRK13034 83 AKQLFGCDY----ANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGA-----KVSLSGKWYNAVQYGVDRLTG 153 (416)
T ss_pred HHHHhCCCc----eEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCC-----cceeccceeeeEEcccccccC
Confidence 999999987 35667899999999999999999999999988888765543 122234444445677776677
Q ss_pred CCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcC
Q 018300 237 LVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL 316 (358)
Q Consensus 237 ~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L 316 (358)
.+|++++++.+...++|+|+++.+.+|...|+++|.++|+++|++|++|+||++|..+.|..+.+++++|++++|+||+|
T Consensus 154 ~~d~~~le~~l~~~~~klVi~~~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l 233 (416)
T PRK13034 154 LIDYDEVEELAKEHKPKLIIAGFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTL 233 (416)
T ss_pred CcCHHHHHHHHhhcCCeEEEECCCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccC
Confidence 89999999988666789999877789999999999999999999999999999999887776666678999999999999
Q ss_pred ccCcEEEEEEeCCCCchhHHHHHHhhccCCcccccccccc
Q 018300 317 RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQVGFVSYV 356 (358)
Q Consensus 317 ~Gp~GG~I~~~~~~~~~~~~~~~i~~~~f~g~q~~~~~~~ 356 (358)
+||.||+|+++++ ++.++++...|++++++++.+.
T Consensus 234 ~g~~GG~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 268 (416)
T PRK13034 234 RGPRGGMILTNDE-----EIAKKINSAVFPGLQGGPLMHV 268 (416)
T ss_pred CCCCCeEEEECcH-----HHHHHHHhhcCCcccCCccHHH
Confidence 9999999999876 6778888889999888877654
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=293.70 Aligned_cols=262 Identities=58% Similarity=0.881 Sum_probs=221.0
Q ss_pred hcccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHH
Q 018300 79 VDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (358)
Q Consensus 79 ~~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la 158 (358)
+..+|++.||+++++|+++..++++.++|++++|++++.|++++...+.++|..|+++++++.|.+..+++|+.++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la 81 (416)
T PRK00011 2 FMDNLAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAK 81 (416)
T ss_pred cchhhhhcCHHHHHHHHHHHHHHhcCeeeecccCcCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999888888888899999999999999999998899999
Q ss_pred HHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCC
Q 018300 159 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 238 (358)
Q Consensus 159 ~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 238 (358)
+++|++.. .|.++|||.|+..++.++++|||+|++++++|+++++++. .....+...+++.++++++++.+
T Consensus 82 ~~~g~~~~----~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~ 152 (416)
T PRK00011 82 ELFGAEYA----NVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGS-----PVNFSGKLYNVVSYGVDEETGLI 152 (416)
T ss_pred HHhCCCce----eeecCCchHHHHHHHHHhcCCCCEEEEeccccCCcccccc-----ccccccceeeEeecCcCcccCCc
Confidence 99999873 4667899999999999999999999999999988766532 11223333456666676556789
Q ss_pred CHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCcc
Q 018300 239 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG 318 (358)
Q Consensus 239 D~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~G 318 (358)
|++++++.++..++|+|++..+++|...|+++|.++|+++|+++++|++|+.|+...+..+.+++++|++++|+||+|+|
T Consensus 153 d~~~l~~~i~~~~~k~v~~~~~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g 232 (416)
T PRK00011 153 DYDEVEKLALEHKPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRG 232 (416)
T ss_pred CHHHHHHHHHhcCCCEEEECCCcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCC
Confidence 99999999875578999887778888889999999999999999999999988876554455555889999999999999
Q ss_pred CcEEEEEEeCCCCchhHHHHHHhhccCCcccccccc
Q 018300 319 PRGGMIFFKKDPVLGVELESAINNAVFPGLQVGFVS 354 (358)
Q Consensus 319 p~GG~I~~~~~~~~~~~~~~~i~~~~f~g~q~~~~~ 354 (358)
|+||+++++++ ++.+++....+++..++|..
T Consensus 233 ~~gg~i~~~~~-----~~~~~l~~~~~~~~~~~~~~ 263 (416)
T PRK00011 233 PRGGLILTNDE-----ELAKKINSAVFPGIQGGPLM 263 (416)
T ss_pred CCceEEEeCCH-----HHHHHHHHHhCccccCCccH
Confidence 99999999765 67788877666666555543
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=290.46 Aligned_cols=259 Identities=63% Similarity=0.987 Sum_probs=218.6
Q ss_pred cccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC
Q 018300 84 GEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL 163 (358)
Q Consensus 84 ~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~ 163 (358)
.++|++++++|.+|..+++++++|+|+++++++.|++++...+..+|..|+|+.++|.|.+..+++|+.+++++++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~ 80 (402)
T cd00378 1 ADVDPEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGA 80 (402)
T ss_pred CCcCHHHHHHHHHHHHHHHhCeeeeccCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCC
Confidence 37899999999999999999999999999999999999999888899999999999999999999999889999999999
Q ss_pred CCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHH
Q 018300 164 DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML 243 (358)
Q Consensus 164 ~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~l 243 (358)
+.. .|.++||+.|+..++.++++|||+|+++++.|++++.++... .+...|..+..++++.+++++.+|++++
T Consensus 81 ~~~----~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~id~~~l 153 (402)
T cd00378 81 EYA----NVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFT---KVSASGKLFESVPYGVDPETGLIDYDAL 153 (402)
T ss_pred Cce----eeecCCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccc---cccccceeEEEecCCcCcccCCcCHHHH
Confidence 863 577789999999999999999999999999999887764311 1334565455555555433678999999
Q ss_pred HHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcEEE
Q 018300 244 EKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGM 323 (358)
Q Consensus 244 e~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~GG~ 323 (358)
++.+...++|+|++..+++|...|+++|.++|+++|+++++|++|+.|+...|..+.++.++|++++|+||+|+||+||+
T Consensus 154 ~~~i~~~~~~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l~G~~gg~ 233 (402)
T cd00378 154 EKMALEFKPKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGL 233 (402)
T ss_pred HHHHHhCCCCEEEecCcccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcccCCcEEEeccccCCCCCCceE
Confidence 99886568999988778889888999999999999999999999999987666545555578999999999999999999
Q ss_pred EEEeCCCCchhHHHHHHhhccCCcccccccc
Q 018300 324 IFFKKDPVLGVELESAINNAVFPGLQVGFVS 354 (358)
Q Consensus 324 I~~~~~~~~~~~~~~~i~~~~f~g~q~~~~~ 354 (358)
++++++ ++.+++.....++..++++.
T Consensus 234 i~~~~~-----~~~~~l~~~~~~~~~~~~~~ 259 (402)
T cd00378 234 ILTRKG-----ELAKKINSAVFPGLQGGPHL 259 (402)
T ss_pred EEeccH-----HHHHHHHHHhCccccCCchH
Confidence 999885 67777776666666666643
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-24 Score=211.90 Aligned_cols=202 Identities=26% Similarity=0.329 Sum_probs=152.9
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCC-CCCcceEEeCC-CHHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLS-GSPANFEVYT 186 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~-~~~~v~V~~~S-Gt~A~~~a~~ 186 (358)
+.....|..|++++...+.+.+++...+ .+..+....+ ..+.+|+.+++++|+++ + +|.++. .|.|++.+..
T Consensus 29 aa~~~~p~~V~~a~~~~~~~~~an~~r~-~~~~~~~~t~-~~e~aRe~va~~~~a~~~~----eIvft~~tT~aln~va~ 102 (405)
T COG0520 29 AATSQKPQAVLDAVAEYYRRYNANVHRG-AHTLAEEATD-LYEAAREAVARFLNADSSD----EIVFTRGTTEALNLVAR 102 (405)
T ss_pred cccccCCHHHHHHHHHHHHhhcCCcCcc-cchHHHHHHH-HHHHHHHHHHHHhCCCCCC----eEEEeCChhHHHHHHHH
Confidence 4455679999999988776555432222 1222333334 44558999999999995 4 455555 5569999999
Q ss_pred Hh---ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC-CC-
Q 018300 187 AI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA-SA- 261 (358)
Q Consensus 187 al---l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~-s~- 261 (358)
++ +++||+|++++.+|.++...+. ......|..++.++ ++ +++.+|.|++++++.+ ++|+|.+++ |+
T Consensus 103 ~l~~~~~~gdeIv~s~~EH~sn~~pw~----~~~~~~Ga~v~~i~--~~-~~g~~~~~~~~~~i~~-~Tklvais~vSn~ 174 (405)
T COG0520 103 GLGRSLKPGDEIVVSDLEHHSNIVPWQ----ELAKRTGAKVRVIP--LD-DDGLLDLDALEKLITP-KTKLVALSHVSNV 174 (405)
T ss_pred HhhhhhcCCCEEEEccCcchhhHHHHH----HHHHhcCcEEEEEe--cC-CCCCcCHHHHHHhcCC-CceEEEEECcccc
Confidence 88 7999999999999988865432 11234466555555 55 5789999999998764 899998865 43
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 262 ~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
.|...|+++|+++||++|+++++|++|++|.. +..++ +||++++|+||||.||.| |+++++++
T Consensus 175 tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~-----~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~ 240 (405)
T COG0520 175 TGTVNPVKEIAELAHEHGALVLVDAAQAAGHL-----PIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKE 240 (405)
T ss_pred ccccchHHHHHHHHHHcCCEEEEECccccCcc-----CCCchhcCCCEEEEcccccccCCCceEEEEEchH
Confidence 57899999999999999999999999998875 33444 899999999999999988 88888884
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-22 Score=194.00 Aligned_cols=200 Identities=19% Similarity=0.256 Sum_probs=156.3
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al 188 (358)
+..+++.|.|+++|...++..| |+|.+-+..|.+..+.+|+ +|+.+++++|+++.+ .+++.+||++|++++.+.
T Consensus 8 ~ATTp~~~~v~~~m~~~~~~~f--gNPsS~H~~G~~A~~~ve~-AR~~iA~llga~~~e---IiFTSG~TEsnNlaI~g~ 81 (386)
T COG1104 8 AATTPVDPEVLEAMLPYLTEVF--GNPSSLHSFGREARKAVEE-AREQIAKLLGADPEE---IIFTSGATESNNLAIKGA 81 (386)
T ss_pred cccCCCCHHHHHHHHHHHHhhc--CCccchhHhHHHHHHHHHH-HHHHHHHHhCCCCCe---EEEecCCcHHHHHHHHhh
Confidence 5677889999999999988775 8888877678887777776 899999999999853 244445688999988873
Q ss_pred --c----cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-
Q 018300 189 --L----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA- 261 (358)
Q Consensus 189 --l----~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~- 261 (358)
. +.|.+|+++..+|.+.+... +.++..|. ++-+++++. +|.+|+++|++.+++ ++.||.+.+.|
T Consensus 82 ~~a~~~~~~~~HIIts~iEH~aVl~~~-----~~Le~~g~--~Vtyl~V~~-~G~v~~e~L~~al~~-~T~LVSim~aNn 152 (386)
T COG1104 82 ALAYRNAQKGKHIITSAIEHPAVLNTC-----RYLERQGF--EVTYLPVDS-NGLVDLEQLEEALRP-DTILVSIMHANN 152 (386)
T ss_pred HHhhhcccCCCeEEEcccccHHHHHHH-----HHHHhcCC--eEEEeCCCC-CCeEcHHHHHHhcCC-CceEEEEEeccc
Confidence 2 25789999998887654321 22223354 555555774 799999999999875 56777665544
Q ss_pred -CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 262 -YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 262 -~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
.|+++|+++|.++|+++|+++++|++|++|-+ |.+++ ++|++++|.|| |.||+| |+++.++.
T Consensus 153 E~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gki-----pi~~~~~~vD~ls~SaHK-~~GpkGiGaLyv~~~ 218 (386)
T COG1104 153 ETGTIQPIAEIGEICKERGILFHVDAVQAVGKI-----PIDLEELGVDLLSFSAHK-FGGPKGIGALYVRPG 218 (386)
T ss_pred CeeecccHHHHHHHHHHcCCeEEEehhhhcCce-----eccccccCcceEEeehhh-ccCCCceEEEEECCC
Confidence 58999999999999999999999999998865 33343 79999999999 899999 88888664
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-21 Score=187.35 Aligned_cols=200 Identities=19% Similarity=0.220 Sum_probs=160.4
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-ccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~pG 192 (358)
.....++++.+++.+.+.. ..++++++|+. +++++|+.+. +.++|||.|+++++.++ ++||
T Consensus 13 i~~~e~~~v~~vl~sg~i~---------~G~~v~~FE~~----~ae~~G~k~a-----va~~sgT~AL~laL~al~ig~G 74 (374)
T COG0399 13 IGEEELAAVQEVLKSGWLT---------GGPFVRRFEQA----FAEYLGVKYA-----VAVSSGTAALHLALLALAIGPG 74 (374)
T ss_pred cchHHHHHHHHHHHcCCee---------cChHHHHHHHH----HHHHhCCCeE-----EEecChHHHHHHHHHhcCCCCC
Confidence 4566777777777665421 12457778874 7899999984 77899999999999977 8999
Q ss_pred CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHH
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMR 272 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~ 272 (358)
|+|++++..+-++ ...+...|. +++.+|+|+++..+|++.||+.+++ ++|.|+.- +.+|...|+++|.
T Consensus 75 DeVI~ps~TfvAT--------an~i~~~Ga--~PVFvDid~~T~nid~~~ie~aIt~-~tKAIipV-hl~G~~~dm~~i~ 142 (374)
T COG0399 75 DEVIVPSFTFVAT--------ANAVLLVGA--KPVFVDIDPDTLNIDPDLIEAAITP-RTKAIIPV-HLAGQPCDMDAIM 142 (374)
T ss_pred CEEEecCCchHHH--------HHHHHHcCC--eEEEEecCCcccCCCHHHHHHHccc-CCeEEEEe-hhccCCCCHHHHH
Confidence 9999988643322 234556676 7889999999999999999999975 68987653 5788999999999
Q ss_pred HHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCc--CcCccCcEEEEEEeCCCCchhHHHHHHhhccCCcccc
Q 018300 273 QIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQV 350 (358)
Q Consensus 273 ~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~h--K~L~Gp~GG~I~~~~~~~~~~~~~~~i~~~~f~g~q~ 350 (358)
++|++||++||.|+||+.|..+.|..... ..|+.+||+| |.|..-.||+|+++++ ++.++++...+.|...
T Consensus 143 ~la~~~~l~vIEDaAqa~Ga~y~gk~vGt--~Gd~~~fSF~~~K~ittgEGGav~tnd~-----ela~k~~~lr~hG~~~ 215 (374)
T COG0399 143 ALAKRHGLPVIEDAAQAHGATYKGKKVGS--FGDIGAFSFHATKNLTTGEGGAVVTNDE-----ELAEKARSLRNHGLSR 215 (374)
T ss_pred HHHHHcCCeEEEEcchhccCeecCccccc--ccceEEEEecCCCCccccCceEEEeCCH-----HHHHHHHHHHHhCcCC
Confidence 99999999999999999999887753222 4677777776 9997669999999998 9999999888877754
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-21 Score=186.23 Aligned_cols=198 Identities=19% Similarity=0.228 Sum_probs=154.9
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al 188 (358)
.+..++++.|++||..++.+.+ |+|.++ +.|.+..+.+|+ +|+.+|+++|+++.+ .+++.++|++|++++.++
T Consensus 50 ~at~p~~~~Vldam~~~~~~~~--~nPh~~-~y~w~~~~~~E~-aR~~VAklInAd~~d---IiFts~ATEs~Nlvl~~v 122 (428)
T KOG1549|consen 50 QATGPMDPRVLDAMLPYLLEYL--GNPHSR-SYGWKAEDAVEA-AREQVAKLINADPSD---IVFTSGATESNNLVLKGV 122 (428)
T ss_pred CcCCCCCHHHHHHHHHHHHHhh--cCCCcc-ccchhhhHHHHH-HHHHHHHHhCCCCCc---EEEeCCchHHHHHHHHHh
Confidence 6677889999999998887665 788887 446666667886 899999999999974 244556678999999998
Q ss_pred -ccCCC----EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--
Q 018300 189 -LKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-- 261 (358)
Q Consensus 189 -l~pGD----~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-- 261 (358)
+.++| +|++++.+|.++.- + +..+.-.| +++..++++ +++.+|.+++++.++. ++++|.+...+
T Consensus 123 ~~~~~~~~~k~iitl~~eH~~v~~-s----~~~l~~~g--~~Vt~lpv~-~~~~~d~~~~~~~i~~-~T~lv~I~~Vnn~ 193 (428)
T KOG1549|consen 123 ARFFGDKTKKHIITLQTEHPCVLD-S----CRALQEEG--LEVTYLPVE-DSGLVDISKLREAIRS-KTRLVSIMHVNNE 193 (428)
T ss_pred hccccccccceEEEecccCcchhH-H----HHHHHhcC--eEEEEeccC-ccccccHHHHHHhcCC-CceEEEEEecccC
Confidence 77788 99998877665432 1 12233345 455666666 6789999999999875 89998876543
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCc-EEEEEEeC
Q 018300 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPR-GGMIFFKK 328 (358)
Q Consensus 262 ~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~-GG~I~~~~ 328 (358)
.+..+|+++|.++|++.|+.+++|+||+.|.+ +..+. ++|++++|.|||+ ||+ -|++++++
T Consensus 194 ~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i-----~vDV~eln~D~~s~s~HK~y-gp~~iGaLYvr~ 257 (428)
T KOG1549|consen 194 IGVLQPVKEIVKICREEGVQVHVDAAQAVGKI-----PVDVQELNADFLSISAHKIY-GPPGIGALYVRR 257 (428)
T ss_pred ccccccHHHHHHHhCcCCcEEEeehhhhcCCc-----cccHHHcCchheeeeccccc-CCCcceEEEEcc
Confidence 46789999999999999999999999999976 22333 8999999999975 566 49999986
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=184.73 Aligned_cols=213 Identities=22% Similarity=0.300 Sum_probs=154.7
Q ss_pred cccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHH
Q 018300 108 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA 187 (358)
Q Consensus 108 ias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~a 187 (358)
.++..++|+.|++++...+.+.+..+..+ .+..+.+..+.+++ +++.+++++|+++++ ..++..|+|.|+..++.+
T Consensus 5 ~~~~~~~p~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~r~~la~~lg~~~~~--~v~~~~~~t~a~~~~~~~ 80 (371)
T PF00266_consen 5 NAGTGPMPKSVLEAISDYLRNFYANPHSG-VSHRSREFAEILEE-AREALAKLLGAPPDE--EVVFTSNGTEALNAVASS 80 (371)
T ss_dssp TSSS-B-BHHHHHHHHHHHHHSGSSTSTS-SSTTSHHHHHHHHH-HHHHHHHHHTSSTTE--EEEEESSHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhhhcCccc-ccchhhhhhHHHHH-HHHHHHHhcCCcccc--ccccccccchhhhhhhhc
Confidence 36778899999999998877766443222 23334455555555 899999999999821 234556677799999999
Q ss_pred h---ccCCCEEEecCCCCCcccccccccchhcc-ccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC--CC
Q 018300 188 I---LKPHDRIMGLDLPHGGHLSHGFMTPKRRV-SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA--SA 261 (358)
Q Consensus 188 l---l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~--s~ 261 (358)
+ +++||+|++.+.+|.+... ++..+ ...|..++.++ .+ .++.+|++++++.+. .++++|.+.+ +.
T Consensus 81 l~~~~~~g~~vl~~~~~~~s~~~-----~~~~~~~~~g~~v~~i~--~~-~~~~~~~~~~~~~l~-~~~~lv~~~~~~~~ 151 (371)
T PF00266_consen 81 LLNPLKPGDEVLVTSNEHPSNRY-----PWEEIAKRKGAEVRVIP--AD-PGGSLDLEDLEEALN-PDTRLVSISHVENS 151 (371)
T ss_dssp HHHHGTTTCEEEEEESSHHHHHH-----HHHHHHHHTTEEEEEEE--EG-TTSSCSHHHHHHHHH-TTESEEEEESBETT
T ss_pred ccccccccccccccccccccccc-----ccccccccchhhhcccc--cc-ccchhhhhhhhhhhc-cccceEEeeccccc
Confidence 8 8999999998876555431 11122 24566555444 54 357899999999987 5889887754 34
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCCCCchhHHHH
Q 018300 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 338 (358)
Q Consensus 262 ~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~~~~~~~~~~ 338 (358)
.|...|+++|.++||++|+++++|++|++|.. +.+++ ++|++++|+|| |.||+| |+++.++ ++.+
T Consensus 152 tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~-----~id~~~~~~D~~~~s~~K-l~gp~G~g~l~v~~------~~~~ 219 (371)
T PF00266_consen 152 TGVRNPIEEIAKLAHEYGALLVVDAAQSAGCV-----PIDLDELGADFLVFSSHK-LGGPPGLGFLYVRP------EAIE 219 (371)
T ss_dssp TTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTS-----S--TTTTTESEEEEESTS-TTSSSTEEEEEEEH------HHHH
T ss_pred ccEEeeeceehhhhhccCCceeEechhccccc-----cccccccccceeeecccc-cCCCCchhhheehh------hhhh
Confidence 68899999999999999999999999998865 33444 89999999999 999998 8898888 5666
Q ss_pred HHhhccC
Q 018300 339 AINNAVF 345 (358)
Q Consensus 339 ~i~~~~f 345 (358)
+++...+
T Consensus 220 ~~~p~~~ 226 (371)
T PF00266_consen 220 RLRPAKP 226 (371)
T ss_dssp HHHTSSS
T ss_pred ccccccc
Confidence 6755433
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=182.84 Aligned_cols=195 Identities=22% Similarity=0.231 Sum_probs=141.2
Q ss_pred HHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-ccCCCEE
Q 018300 117 AVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHDRI 195 (358)
Q Consensus 117 ~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~pGD~V 195 (358)
+.++++.+.+.+.+. ....+.++++|+. ++++||.++ .+.++|||.|+.+++.++ ++|||+|
T Consensus 6 e~~~~v~~~l~s~~~--------~~~g~~~~~fE~~----~a~~~g~~~-----~~~~~sgt~Al~~al~~l~~~~gdeV 68 (363)
T PF01041_consen 6 EEIDAVLEVLRSGWL--------STYGPYVEEFEKE----FAEYFGVKY-----AVAVSSGTSALHLALRALGLGPGDEV 68 (363)
T ss_dssp HHHHHHHHHHHHTCC--------SSSSHHHHHHHHH----HHHHHTSSE-----EEEESSHHHHHHHHHHHTTGGTTSEE
T ss_pred HHHHHHHHHHHhCCc--------cCCCHHHHHHHHH----HHHHhCCCe-----EEEeCChhHHHHHHHHhcCCCcCceE
Confidence 445556666555432 1113556777764 788999887 377899999999999999 8999999
Q ss_pred EecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHH
Q 018300 196 MGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIA 275 (358)
Q Consensus 196 l~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia 275 (358)
+++.....+. ..++...|. +++.++++++++.+|++++++++.+ ++|+|++. +.+|...|+++|.++|
T Consensus 69 i~p~~t~~~~--------~~ai~~~G~--~pv~~Di~~~~~~id~~~~~~~i~~-~t~ai~~~-h~~G~~~d~~~i~~~~ 136 (363)
T PF01041_consen 69 IVPAYTFPAT--------ASAILWAGA--EPVFVDIDPETLNIDPEALEKAITP-KTKAILVV-HLFGNPADMDAIRAIA 136 (363)
T ss_dssp EEESSS-THH--------HHHHHHTT---EEEEE-BETTTSSB-HHHHHHHHHT-TEEEEEEE--GGGB---HHHHHHHH
T ss_pred ecCCCcchHH--------HHHHHHhcc--EEEEEeccCCcCCcCHHHHHHHhcc-CccEEEEe-cCCCCcccHHHHHHHH
Confidence 9987543322 124556665 7888899999999999999999875 67877664 4677778999999999
Q ss_pred HHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCc--CcCccCcEEEEEEeCCCCchhHHHHHHhhccCCcc
Q 018300 276 DAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL 348 (358)
Q Consensus 276 ~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~h--K~L~Gp~GG~I~~~~~~~~~~~~~~~i~~~~f~g~ 348 (358)
+++|++||.|+||+.|....|. ++. ..|+.++|+| |.+.+..||+|+++++ ++.+++......|.
T Consensus 137 ~~~~i~lIeD~a~a~g~~~~g~---~~G~~gd~~~fSf~~~K~i~~geGG~v~~~~~-----~~~~~~~~~~~~g~ 204 (363)
T PF01041_consen 137 RKHGIPLIEDAAQAFGARYKGR---PVGSFGDIAIFSFHPTKIITTGEGGAVVTNDP-----ELAERARALRNHGR 204 (363)
T ss_dssp HHTT-EEEEE-TTTTT-EETTE---ETTSSSSEEEEESSTTSSS-SSS-EEEEESTH-----HHHHHHHHHTBTTE
T ss_pred HHcCCcEEEccccccCceeCCE---eccCCCCceEecCCCCCCCcCCCCeeEEecHH-----HHHHHhhhhhccCc
Confidence 9999999999999999776553 233 5799999987 9898889999999998 88888877655554
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.6e-20 Score=179.26 Aligned_cols=200 Identities=18% Similarity=0.219 Sum_probs=142.7
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCC-cCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA 187 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~-r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~a 187 (358)
++..++++.|++++...+.+.+ ++|+. .+..+.+..+.+++ +++++++++|+++++ .+++.++|.|++.++.+
T Consensus 6 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~r~~la~~~g~~~~~---v~~t~~~t~a~~~~l~~ 79 (364)
T PLN02651 6 QATTPIDPRVLDAMLPFLIEHF--GNPHSRTHLYGWESEDAVEK-ARAQVAALIGADPKE---IIFTSGATESNNLAIKG 79 (364)
T ss_pred cCCCCCCHHHHHHHHHHHHhCC--CCCChhhhHHHHHHHHHHHH-HHHHHHHHhCCCCCe---EEEeCCHHHHHHHHHHH
Confidence 5667899999999988776544 44543 12223333344544 789999999998642 34455667788877655
Q ss_pred h----ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--
Q 018300 188 I----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-- 261 (358)
Q Consensus 188 l----l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-- 261 (358)
+ .++||+|++.+.+|.+.... +..+...|..++ .++++ +++.+|++++++.+++ +++++++...+
T Consensus 80 ~~~~~~~~g~~vl~~~~~h~s~~~~-----~~~~~~~g~~v~--~v~~~-~~~~~d~~~l~~~i~~-~t~lv~v~~~~n~ 150 (364)
T PLN02651 80 VMHFYKDKKKHVITTQTEHKCVLDS-----CRHLQQEGFEVT--YLPVK-SDGLVDLDELAAAIRP-DTALVSVMAVNNE 150 (364)
T ss_pred HHHhccCCCCEEEEcccccHHHHHH-----HHHHHhcCCEEE--EEccC-CCCcCCHHHHHHhcCC-CcEEEEEECCCCC
Confidence 4 57899999988766553221 112223455444 44455 3578999999999865 68888776544
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 262 ~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+|...|+++|.++|+++|+++++|++|++|.. +..++ ++|++++|+||| .||.| |+++.+++
T Consensus 151 tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~-----~~~~~~~~~D~~~~s~hK~-~gp~G~g~l~v~~~ 215 (364)
T PLN02651 151 IGVIQPVEEIGELCREKKVLFHTDAAQAVGKI-----PVDVDDLGVDLMSISGHKI-YGPKGVGALYVRRR 215 (364)
T ss_pred ceecccHHHHHHHHHHcCCEEEEEcchhhCCc-----ccCcccCCCCEEEechhhh-CCCCceEEEEEcCC
Confidence 56789999999999999999999999998754 22333 899999999996 78987 88888874
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=176.10 Aligned_cols=197 Identities=18% Similarity=0.107 Sum_probs=141.9
Q ss_pred ccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHH
Q 018300 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (358)
Q Consensus 105 i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a 184 (358)
++++|++..++++|++++...+. ++ +| .. ..++.+.+++++++++|++..+ ..+.+.||++|+..+
T Consensus 1 ~~~~~~~~~~~~~v~~a~~~~~~-----~~---~~---~~-~~~~~~~~~~~la~~~g~~~~~--~~~~~~~~t~al~~~ 66 (356)
T cd06451 1 LLLIPGPSNVPPRVLKAMNRPML-----GH---RS---PE-FLALMDEILEGLRYVFQTENGL--TFLLSGSGTGAMEAA 66 (356)
T ss_pred CcccCCCcCCCHHHHHHhCCCcc-----CC---CC---HH-HHHHHHHHHHHHHHHhcCCCCC--EEEEecCcHHHHHHH
Confidence 47899999999999999965331 11 11 11 2233444678899999995432 234566789999999
Q ss_pred HHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--C
Q 018300 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA--Y 262 (358)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~--~ 262 (358)
+.+++++||+|++.++.|.+ ..+. ..+...|..+. .+++++ ++.+|++++++.++.+++++|++..++ +
T Consensus 67 ~~~~~~~g~~vl~~~~~~~~---~~~~---~~~~~~g~~~~--~v~~~~-~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~ 137 (356)
T cd06451 67 LSNLLEPGDKVLVGVNGVFG---DRWA---DMAERYGADVD--VVEKPW-GEAVSPEEIAEALEQHDIKAVTLTHNETST 137 (356)
T ss_pred HHHhCCCCCEEEEecCCchh---HHHH---HHHHHhCCCeE--EeecCC-CCCCCHHHHHHHHhccCCCEEEEeccCCCc
Confidence 99999999999998753332 1110 12334565444 444553 468999999998875578988775543 5
Q ss_pred CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCC-C-CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K-YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 263 ~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl-~-gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
|...|+++|.++|+++|+++++|++|++|.. +.++ . ++|++++|+||+|++|.| |+++.+++
T Consensus 138 G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~-----~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~ 202 (356)
T cd06451 138 GVLNPLEGIGALAKKHDALLIVDAVSSLGGE-----PFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSER 202 (356)
T ss_pred ccccCHHHHHHHHHhcCCEEEEeeehhccCc-----cccccccCccEEEecCchhccCCCCcceeEECHH
Confidence 6789999999999999999999999987643 1122 2 789999999999999877 88888763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-19 Score=176.30 Aligned_cols=198 Identities=18% Similarity=0.190 Sum_probs=144.4
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-ccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~pG 192 (358)
.++..++++...+.+.+. +.| +.+.++|+ ++++++|+++ .+.++|||.|+.+++.++ ++||
T Consensus 12 ~~~~e~~~~~~~l~~~~~--------~~g-~~~~~le~----~la~~~g~~~-----~v~~~sgt~al~lal~al~~~~G 73 (379)
T PRK11658 12 MGDEELAAVKEVLRSGWI--------TTG-PKNQALEQ----AFCQLTGNQH-----AIAVSSATAGMHITLMALGIGPG 73 (379)
T ss_pred CCHHHHHHHHHHHHcCCc--------cCC-HhHHHHHH----HHHHHhCCCe-----EEEECCHHHHHHHHHHHcCCCCC
Confidence 345556666666543221 112 34556665 4788999976 366789999999999999 8999
Q ss_pred CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHH
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMR 272 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~ 272 (358)
|+|+++++.|.++.. .+...|. +++.+++++++..+|++++++.+.+ ++|+|+..+ .+|...|+++|.
T Consensus 74 d~Viv~~~~~~~~~~--------~~~~~G~--~~v~vd~~~~~~~~d~~~l~~~i~~-~tkav~~~~-~~G~~~d~~~i~ 141 (379)
T PRK11658 74 DEVITPSLTWVSTLN--------MIVLLGA--TPVMVDVDRDTLMVTPEAIEAAITP-RTKAIIPVH-YAGAPADLDAIR 141 (379)
T ss_pred CEEEECCCcHHHHHH--------HHHHcCC--EEEEEecCCCcCCcCHHHHHHhccc-CCeEEEEeC-CCCCcCCHHHHH
Confidence 999999876655421 2345565 5566667766677999999998864 788887543 367889999999
Q ss_pred HHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHHhhccCCc
Q 018300 273 QIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPG 347 (358)
Q Consensus 273 ~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~~~~f~g 347 (358)
++|+++|+++++|++|+.|....+...... +.++++++.+|.|.+++||+++++++ ++.+++......|
T Consensus 142 ~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~-g~~~~Sf~~~K~l~~g~GG~v~~~~~-----~~~~~~~~~~~~G 210 (379)
T PRK11658 142 AIGERYGIPVIEDAAHAVGTYYKGRHIGAR-GTAIFSFHAIKNITCAEGGLVVTDDD-----ELADRLRSLKFHG 210 (379)
T ss_pred HHHHHcCCeEEEECCCccCCeECCeecCCC-CCEEEeCCCCCcCcccCceEEEECCH-----HHHHHHHHHHHcC
Confidence 999999999999999999877654321111 56777888889999999999999876 6777666544333
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-19 Score=177.88 Aligned_cols=205 Identities=16% Similarity=0.160 Sum_probs=148.7
Q ss_pred cccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHH
Q 018300 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (358)
Q Consensus 104 ~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~ 183 (358)
.+.++|++..+++.|++++...+..+ .+..+.+ +.+.++++++++||++..+ +.+++.+||.++..
T Consensus 10 ~~l~~pGP~~~~~~V~~a~~~~~~~~-----------~~~~~~~-~~~~~~~~l~~~~g~~~~~--~vi~~~~gt~a~~~ 75 (401)
T PLN02409 10 NHLFVPGPVNIPERVLRAMNRPNEDH-----------RSPAFPA-LTKELLEDVKYIFKTKSGT--PFIFPTTGTGAWES 75 (401)
T ss_pred ceeccCCCCCCCHHHHHHhcCCCCCC-----------CCHHHHH-HHHHHHHHHHHHhCCCCCC--EEEEeCCcHHHHHH
Confidence 34677999999999999997544221 1223333 4445788999999997532 35667788899999
Q ss_pred HHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh---cCCeEEEEcCC
Q 018300 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIAGAS 260 (358)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~---~~~klIi~~~s 260 (358)
++.++++|||+|+++++. |++..+. ..+...|..+..++ .+. +..+|++++++.++. .++|+|++.++
T Consensus 76 a~~~~~~~Gd~Vlv~~~~---~~~~~~~---~~~~~~g~~v~~v~--~~~-~~~~~~~~l~~~l~~~~~~~~k~v~~~~~ 146 (401)
T PLN02409 76 ALTNTLSPGDKVVSFRIG---QFSLLWI---DQMQRLNFDVDVVE--SPW-GQGADLDILKSKLRQDTNHKIKAVCVVHN 146 (401)
T ss_pred HHHhcCCCCCEEEEeCCC---chhHHHH---HHHHHcCCceEEEE--CCC-CCCCCHHHHHHHHhhCcCCCccEEEEEee
Confidence 999999999999998853 3333221 12334565444444 443 235899999998875 36888877654
Q ss_pred --CCCCCCCHHHHHHH--HHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCCCCch
Q 018300 261 --AYPRDFDYPRMRQI--ADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG 333 (358)
Q Consensus 261 --~~~~~~dl~~I~~i--a~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~~~~~ 333 (358)
.+|...|+++|.++ |+++|+++++|++|++|.. +..++ ++|++++|+||||.||.| |+++.++
T Consensus 147 ~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~-----~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~----- 216 (401)
T PLN02409 147 ETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGAL-----DFRMDEWGVDVALTGSQKALSLPTGLGIVCASP----- 216 (401)
T ss_pred cccccccCCHHHHHHHHhhhccCcEEEEEcccccCCc-----cccccccCccEEEEcCccccCcCCCcceeEECH-----
Confidence 36778999999999 9999999999999987643 33333 799999999999999887 8888776
Q ss_pred hHHHHHHhh
Q 018300 334 VELESAINN 342 (358)
Q Consensus 334 ~~~~~~i~~ 342 (358)
++.+++..
T Consensus 217 -~~~~~~~~ 224 (401)
T PLN02409 217 -KALEASKT 224 (401)
T ss_pred -HHHHHHhc
Confidence 45555543
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-19 Score=174.60 Aligned_cols=173 Identities=19% Similarity=0.189 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-ccCCCEEEecCCCCCcccccccccchhccccCCceE
Q 018300 146 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF 224 (358)
Q Consensus 146 ~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~ 224 (358)
.+++|+ .+++++|.++ .+.++||+.|+..++.++ ++|||+|+++++.+.++. ..+...|.
T Consensus 31 ~~~le~----~la~~~g~~~-----~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~--------~~~~~~G~-- 91 (380)
T TIGR03588 31 VPAFEE----ALAEYVGAKY-----AVAFNSATSALHIACLALGVGPGDRVWTTPITFVATA--------NCALYCGA-- 91 (380)
T ss_pred HHHHHH----HHHHHHCCCe-----EEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHH--------HHHHHcCC--
Confidence 445554 5788999976 356789999999999999 899999999987654431 13344565
Q ss_pred EEEeceecCCCCCCCHHHHHHHhhh---cCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCC
Q 018300 225 ESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP 301 (358)
Q Consensus 225 ~~~~~~~~~~~~~iD~d~le~~i~~---~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p 301 (358)
+++.++++++++.+|++++++.++. .++++|++.. .+|...|+++|.++|+++|++|++|++|+.|....+.....
T Consensus 92 ~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~-~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~ 170 (380)
T TIGR03588 92 KVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVD-FAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGN 170 (380)
T ss_pred EEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEEeC-CCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCC
Confidence 5666667766778999999998863 3678877543 36778899999999999999999999999986543321111
Q ss_pred CCCCcEEEEcCc--CcCccCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 302 FKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 302 l~gaDiv~~S~h--K~L~Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
.+++|+.++|+| |++.++.||+++++++ ++.+++...
T Consensus 171 ~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~-----~~~~~~~~~ 209 (380)
T TIGR03588 171 CRYADATVFSFHPVKIITTAEGGAVTTNDE-----ELAERMRLL 209 (380)
T ss_pred ccccceEEEecCCCCcccccCceEEEECCH-----HHHHHHHHH
Confidence 124599999998 8898889999999887 677766553
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-19 Score=175.57 Aligned_cols=201 Identities=13% Similarity=0.089 Sum_probs=139.9
Q ss_pred ccccccCCCCcHHHHHHHhhhhhcccCCCCCCC-cCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHH
Q 018300 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (358)
Q Consensus 105 i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~-r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~ 183 (358)
++-|.--.++++++++++..... .+ +.|.. .+..+......++ .+++.+++++|++.. +++++|+.|+.+
T Consensus 23 ~~~~~~~~p~~~~~~~a~~~~~~-~~--~~~~~~~~~~~~~~~~~~~-~l~~~lA~~~g~~~~-----~~~~g~t~a~~~ 93 (387)
T PRK09331 23 LDPIQRGGILTPEARKALIEYGD-GY--SVCDYCPGRLDQIKKPPIA-DFHEDLAEFLGMDEA-----RVTHGAREGKFA 93 (387)
T ss_pred cChhhcCCCCCHHHHHHHHHHHh-cc--CCCcccccccccccChHHH-HHHHHHHHHhCCCcE-----EEeCCHHHHHHH
Confidence 34445567889999999987763 22 23221 1111211111233 356778999999762 446778889999
Q ss_pred HHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec-CCCCCCCHHHHHHHhhhc------CCeEEE
Q 018300 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAILF------RPKLII 256 (358)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~iD~d~le~~i~~~------~~klIi 256 (358)
++.+++++||+|++..+ +|++.. ..+...|..+ +.++.+ .+++.+|++++++.++.. ++++|+
T Consensus 94 al~~l~~~gd~Vlv~~~---~h~s~~-----~~~~~~G~~~--~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~ 163 (387)
T PRK09331 94 VMHSLCKKGDYVVLDGL---AHYTSY-----VAAERAGLNV--REVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALAL 163 (387)
T ss_pred HHHHhcCCCCEEEECCC---chHHHH-----HHHHHcCCEE--EEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEE
Confidence 99999999999999876 443321 1234556644 444442 135679999999988642 578888
Q ss_pred EcCCC--CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccC-cEEEEEEeCC
Q 018300 257 AGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGP-RGGMIFFKKD 329 (358)
Q Consensus 257 ~~~s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp-~GG~I~~~~~ 329 (358)
+..++ +|...|+++|.++|+++|+++++|++|+.|.. |.+.. ++|++++|+||+|++| ++|+++++++
T Consensus 164 l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~-----~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~ 236 (387)
T PRK09331 164 LTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRM-----PVDGKKLGADFIVGSGHKSMAASAPSGVLATTEE 236 (387)
T ss_pred EECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCc-----CCCHHHcCCCEEEeeCcccccCCCCEEEEEECHH
Confidence 76544 56788999999999999999999999997743 22222 7999999999999776 4688888763
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-19 Score=175.21 Aligned_cols=200 Identities=19% Similarity=0.258 Sum_probs=144.4
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al 188 (358)
++..++++.|++++...+.+. .|+|+..+..+.+..+.+++ +++++++++|+++++ .++..+||.|+..++.++
T Consensus 6 aa~~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~r~~la~~~g~~~~~---i~~t~~~t~a~~~al~~~ 79 (379)
T TIGR03402 6 NATTRVDPEVLEAMLPYFTEY--FGNPSSMHSFGGEVGKAVEE-AREQVAKLLGAEPDE---IIFTSGGTESDNTAIKSA 79 (379)
T ss_pred cCCCCCCHHHHHHHHHHHHhc--CCCCCcccHHHHHHHHHHHH-HHHHHHHHhCCCCCe---EEEeCcHHHHHHHHHHHH
Confidence 567788999999998877643 36666433223344455554 789999999998642 344557788999888876
Q ss_pred c---cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--CC
Q 018300 189 L---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA--YP 263 (358)
Q Consensus 189 l---~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~--~~ 263 (358)
+ ++||+|++.+.+|.++.... ..+...|..+.. ++++ +++.+|++++++.+++ +++++++...+ +|
T Consensus 80 ~~~~~~~~~vv~~~~~~~s~~~~~-----~~~~~~G~~v~~--v~~~-~~g~~~~~~l~~~i~~-~~~lv~i~~~~n~tG 150 (379)
T TIGR03402 80 LAAQPEKRHIITTAVEHPAVLSLC-----QHLEKQGYKVTY--LPVD-EEGRLDLEELRAAITD-DTALVSVMWANNETG 150 (379)
T ss_pred HHhcCCCCeEEEcccccHHHHHHH-----HHHHHcCCEEEE--EccC-CCCcCCHHHHHHhcCC-CcEEEEEEcccCCee
Confidence 3 56789998887765543221 122234654444 4454 3568999999999864 78888775444 46
Q ss_pred CCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 264 RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 264 ~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
...|+++|.++|+++|+++++|++|+.|.. +..+. ++|++++|+|| +.||.| |+++.+++
T Consensus 151 ~~~~~~~I~~l~~~~g~~vivD~~~~~g~~-----~~~~~~~~~D~~~~s~~K-~~gp~G~g~l~v~~~ 213 (379)
T TIGR03402 151 TIFPIEEIGEIAKERGALFHTDAVQAVGKI-----PIDLKEMNIDMLSLSGHK-LHGPKGVGALYIRKG 213 (379)
T ss_pred ecccHHHHHHHHHHcCCEEEEECccccccc-----ccCcccCCCCEEEEcHHH-cCCCCceEEEEECCC
Confidence 789999999999999999999999987743 32333 89999999999 789998 88888764
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-19 Score=175.19 Aligned_cols=226 Identities=19% Similarity=0.183 Sum_probs=159.1
Q ss_pred ccccc--ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HH
Q 018300 104 SLELI--ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA 180 (358)
Q Consensus 104 ~i~li--as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A 180 (358)
-|+|- .++..+|+.+++++...+.+... .|.. ..|.. ++++.+.+++.+.+|.+.+ ..-+|.+++|+ +|
T Consensus 30 vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~-~Y~~---~~G~~---~LReaia~~~~~~~~~~~~-~~~eiivt~Ga~~a 101 (393)
T COG0436 30 VIDLSIGEPDFPTPEHIIEAAIEALEEGGT-HYTP---SAGIP---ELREAIAEKYKRRYGLDVD-PEEEIIVTAGAKEA 101 (393)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHhcccC-CCCC---CCCCH---HHHHHHHHHHHHHhCCCCC-CCCeEEEeCCHHHH
Confidence 34444 44557899999999887765321 2211 23444 6888888899999886542 11347777766 59
Q ss_pred HHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC--CCCCCCHHHHHHHhhhcCCeEEEEc
Q 018300 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE--STGLVDYDMLEKTAILFRPKLIIAG 258 (358)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~iD~d~le~~i~~~~~klIi~~ 258 (358)
+..++.++++|||+|++++|.|..|.. .+.+.|. +++++++++ ++..+|.++|++.+.+ ++|+|+++
T Consensus 102 l~~~~~a~~~pGDeVlip~P~Y~~y~~--------~~~~~gg--~~v~v~l~~~~~~f~~d~~~l~~~i~~-ktk~i~ln 170 (393)
T COG0436 102 LFLAFLALLNPGDEVLIPDPGYPSYEA--------AVKLAGG--KPVPVPLDEEENGFKPDLEDLEAAITP-KTKAIILN 170 (393)
T ss_pred HHHHHHHhcCCCCEEEEeCCCCcCHHH--------HHHhcCC--EEEEEeCCcCccCCcCCHHHHHhhcCc-cceEEEEe
Confidence 999999999999999999986655432 3456676 445555533 2569999999999987 89999999
Q ss_pred CCCCCC--CC---CHHHHHHHHHHcCCEEEEeccccccccccCC-ccCCCC--CC-c--EEEEcCcCcC--ccCcEEEEE
Q 018300 259 ASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK--YC-D--VVTTTTHKSL--RGPRGGMIF 325 (358)
Q Consensus 259 ~s~~~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~~pl~--ga-D--iv~~S~hK~L--~Gp~GG~I~ 325 (358)
.++||+ .. .+++|+++|++||++|++|+++ .++++.+. .++.++ .. | |++.|++|++ +|+|.|+++
T Consensus 171 ~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY-~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v 249 (393)
T COG0436 171 SPNNPTGAVYSKEELKAIVELAREHDIIIISDEIY-EELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVV 249 (393)
T ss_pred CCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhh-hhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEee
Confidence 888875 33 4889999999999999999995 48888774 445444 32 3 7788999995 899999999
Q ss_pred Ee-CCCC-chhHHHHHHhhccCCccc
Q 018300 326 FK-KDPV-LGVELESAINNAVFPGLQ 349 (358)
Q Consensus 326 ~~-~~~~-~~~~~~~~i~~~~f~g~q 349 (358)
++ ++.+ .+..+.+.+..+.+...|
T Consensus 250 ~~~~~l~~~~~~~~~~~~~~~~~~~Q 275 (393)
T COG0436 250 GPPEELIAALRKLKSYLTSCAPTPAQ 275 (393)
T ss_pred cChHHHHHHHHHHHHhcccCCCHHHH
Confidence 98 4332 222344444444444444
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.8e-19 Score=171.62 Aligned_cols=202 Identities=17% Similarity=0.176 Sum_probs=144.2
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCc-CCCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceEEeCCCHHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYT 186 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r-~~~G~~~~~~lE~~~~~~la~lfg~~-~~~~~v~V~~~SGt~A~~~a~~ 186 (358)
.+..++|+.+++++...+...+ ++|.+. +..+....+.++ .++++++++||++ +. ..++++++|.|+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~---~v~~~~g~t~a~~~~~~ 79 (373)
T cd06453 6 AATSQKPQPVIDAIVDYYRHYN--ANVHRGVHELSARATDAYE-AAREKVARFINAPSPD---EIIFTRNTTEAINLVAY 79 (373)
T ss_pred ccccCCCHHHHHHHHHHHHhcC--CCCCCCccHHHHHHHHHHH-HHHHHHHHHhCCCCCC---eEEEeCCHHHHHHHHHH
Confidence 5677899999999988775543 344331 222333334444 4788899999998 43 12344566779999999
Q ss_pred Hhcc---CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--
Q 018300 187 AILK---PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-- 261 (358)
Q Consensus 187 all~---pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-- 261 (358)
++.. |||+|+++++.|.++..... ......|..+..+ +++ +++.+|++++++.+.+ ++++|++..++
T Consensus 80 ~l~~~~~~g~~vl~~~~~~~~~~~~~~----~~~~~~g~~~~~v--~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~ 151 (373)
T cd06453 80 GLGRANKPGDEIVTSVMEHHSNIVPWQ----QLAERTGAKLKVV--PVD-DDGQLDLEALEKLLTE-RTKLVAVTHVSNV 151 (373)
T ss_pred HhhhcCCCCCEEEECcchhHHHHHHHH----HHHhhcCcEEEEe--ecC-CCCCcCHHHHHHHhcC-CceEEEEeCcccc
Confidence 9876 99999999887665421110 1122446544444 455 4578999999998865 78888876554
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 262 ~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
.|...|+++|.++|+++|++|++|++|+.|.. +.++. ++|++++|+||++++++.|+++++++
T Consensus 152 tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~~~~g~g~~~~~~~ 216 (373)
T cd06453 152 LGTINPVKEIGEIAHEAGVPVLVDGAQSAGHM-----PVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEE 216 (373)
T ss_pred cCCcCCHHHHHHHHHHcCCEEEEEhhhhcCce-----eeeccccCCCEEEeccccccCCCCcEEEEEchH
Confidence 46788999999999999999999999987654 22232 79999999999998766688888764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.3e-19 Score=174.70 Aligned_cols=200 Identities=17% Similarity=0.190 Sum_probs=143.0
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCC-cCCCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceEEeCC-CHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLS-GSPANFEVY 185 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~-r~~~G~~~~~~lE~~~~~~la~lfg~~-~~~~~v~V~~~S-Gt~A~~~a~ 185 (358)
++..++++.|++++...+...+. ++.. .+..+.+..+.+++ +|+.+++++|+. ++ +|.+++ +|+++..++
T Consensus 30 a~~~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~----~v~~t~g~t~~l~~~~ 102 (406)
T PRK09295 30 AASAQKPSQVIDAEAEFYRHGYA--AVHRGIHTLSAQATEKMEN-VRKQAALFINARSAE----ELVFVRGTTEGINLVA 102 (406)
T ss_pred cccccCCHHHHHHHHHHHHhcCC--CCCCcccHHHHHHHHHHHH-HHHHHHHHcCcCCCC----eEEEeCCHHHHHHHHH
Confidence 66778899999999887765442 2221 23334455566665 789999999984 43 344454 566888888
Q ss_pred HH----hccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC
Q 018300 186 TA----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (358)
Q Consensus 186 ~a----ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~ 261 (358)
.+ +++|||+|++++++|.+...... ......|..+ ..++++ +++.+|++++++.+++ ++++|++...+
T Consensus 103 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~----~~~~~~g~~v--~~v~~~-~~~~~d~~~l~~~i~~-~t~lv~l~~~~ 174 (406)
T PRK09295 103 NSWGNSNVRAGDNIIISEMEHHANIVPWQ----MLCARVGAEL--RVIPLN-PDGTLQLETLPALFDE-RTRLLAITHVS 174 (406)
T ss_pred HHhhhhcCCCcCEEEECcchhhHHHHHHH----HHHHHcCcEE--EEEecC-CCCCCCHHHHHHhcCC-CcEEEEEecch
Confidence 76 46899999999887765422111 1123446544 444455 3567999999998864 78988876554
Q ss_pred --CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 262 --YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 262 --~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+|...|+++|.++|+++|+++++|++|+.|.. +.++. ++|++++|+|| +.||.| |+++.+++
T Consensus 175 n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~-----~~~~~~~~~D~~~~s~~K-~~gp~G~G~l~~~~~ 241 (406)
T PRK09295 175 NVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHH-----PVDVQALDCDFYVFSGHK-LYGPTGIGILYVKEA 241 (406)
T ss_pred hcccccCCHHHHHHHHHHcCCEEEEEcccccCcc-----ccCchhcCCCEEEeehhh-ccCCCCcEEEEEchH
Confidence 46789999999999999999999999987753 22333 79999999999 678887 88888773
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=173.29 Aligned_cols=200 Identities=21% Similarity=0.252 Sum_probs=144.0
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCC-cCCCCcHHHHHHHHHHHHHHHHHcCC-CCCCCcceEEe-CCCHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQP-LSGSPANFEVY 185 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~-r~~~G~~~~~~lE~~~~~~la~lfg~-~~~~~~v~V~~-~SGt~A~~~a~ 185 (358)
++..++|+.|++++...+.+.+ +++.+ .+..+....+.+++ +|+.+++++|+ +++ +|.+ .|+|+++..++
T Consensus 26 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~r~~la~~~g~~~~~----~i~~~~~~t~~i~~~~ 98 (401)
T PRK10874 26 AATALKPQAVIEATQQFYSLSA--GNVHRSQFAAAQRLTARYEA-AREQVAQLLNAPDAK----NIVWTRGTTESINLVA 98 (401)
T ss_pred CcccCCCHHHHHHHHHHHHhcc--CCCCCcccHHHHHHHHHHHH-HHHHHHHHcCCCCCC----EEEEECCHHHHHHHHH
Confidence 6677889999999988876543 44432 22234445555655 78999999999 443 3444 45567999998
Q ss_pred HHh----ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC
Q 018300 186 TAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (358)
Q Consensus 186 ~al----l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~ 261 (358)
.++ ++|||+|++++++|.+.+.... ......|..+..+ +++ +++.+|++++++.+.+ ++++|++..++
T Consensus 99 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~----~~~~~~g~~v~~v--~~~-~~~~~d~~~l~~~i~~-~t~lv~i~~~~ 170 (401)
T PRK10874 99 QSYARPRLQPGDEIIVSEAEHHANLVPWL----MVAQQTGAKVVKL--PLG-ADRLPDVDLLPELITP-RTRILALGQMS 170 (401)
T ss_pred HHhhhccCCCcCEEEECCcchHHHHHHHH----HHHHHhCCEEEEE--ecC-CCCcCCHHHHHHhcCc-CcEEEEEeCCc
Confidence 887 4899999999987665322110 1123456644444 454 3568999999998864 78988876554
Q ss_pred --CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 262 --YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 262 --~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+|...|+++|.++|+++|+++++|++|+.|.. +..+. ++|++++|+|| +.||.| |+++.+++
T Consensus 171 n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K-~~gp~G~G~l~~~~~ 237 (401)
T PRK10874 171 NVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHF-----PADVQALDIDFYAFSGHK-LYGPTGIGVLYGKSE 237 (401)
T ss_pred ccccCcCCHHHHHHHHHHcCCEEEEECCcccccc-----cCCchhcCCCEEEEeccc-ccCCCccEEEEEchH
Confidence 46788999999999999999999999987654 22233 79999999999 568887 88887763
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=171.80 Aligned_cols=197 Identities=21% Similarity=0.249 Sum_probs=142.4
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCc-HHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~-~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pG 192 (358)
.+|.|++++...+.. +..||++.++..|. +...+ .++.+++++|.+. .+.++||+.|+..++.++++||
T Consensus 53 ~~~~v~~~~~~~~~~-~~~~~~~s~~~~G~~~~~~~----le~~ia~~~g~~~-----~ii~~~~~~a~~~~~~~l~~~g 122 (393)
T TIGR01822 53 SHPDLIQAAKDALDE-HGFGMSSVRFICGTQDIHKE----LEAKIAAFLGTED-----TILYASCFDANGGLFETLLGAE 122 (393)
T ss_pred CCHHHHHHHHHHHHH-hCCCCCCcCcccCChHHHHH----HHHHHHHHhCCCc-----EEEECchHHHHHHHHHHhCCCC
Confidence 488899998887754 33478888888785 33333 4556899999865 3667899999999999999999
Q ss_pred CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh---c--CCeEEEEcCC--CCCCC
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---F--RPKLIIAGAS--AYPRD 265 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~---~--~~klIi~~~s--~~~~~ 265 (358)
|+|++.++.|.++.. .+...+.. .+.+ ..+|++++++.+++ . ++++|+++.. .+|..
T Consensus 123 d~vi~~~~~~~s~~~--------~~~~~~~~--~~~~------~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~ 186 (393)
T TIGR01822 123 DAIISDALNHASIID--------GVRLCKAK--RYRY------ANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVI 186 (393)
T ss_pred CEEEEeccccHHHHH--------HHHhcCCc--eEEe------CCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCc
Confidence 999999887665432 22233331 1221 24789999988764 2 5678877643 35667
Q ss_pred CCHHHHHHHHHHcCCEEEEeccccccccccC-C--cc-CCCC-CCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHH
Q 018300 266 FDYPRMRQIADAVGALLMMDMAHISGLVAAS-V--VA-DPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAI 340 (358)
Q Consensus 266 ~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g-~--~~-~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i 340 (358)
.|+++|.++|+++|++|++|++|+.|..... . .+ ..+. ++|++++|+||+|+|+++|++++++ ++.+.+
T Consensus 187 ~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r~G~~~~~~------~~~~~l 260 (393)
T TIGR01822 187 APLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGASGGFTTARK------EVVELL 260 (393)
T ss_pred CCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCCcEEEEeCH------HHHHHH
Confidence 8999999999999999999999987765321 1 00 1122 6899999999999999999999876 455555
Q ss_pred hh
Q 018300 341 NN 342 (358)
Q Consensus 341 ~~ 342 (358)
..
T Consensus 261 ~~ 262 (393)
T TIGR01822 261 RQ 262 (393)
T ss_pred HH
Confidence 44
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=169.99 Aligned_cols=198 Identities=20% Similarity=0.276 Sum_probs=136.6
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCC-cCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEe-CCCHHHHHHHHHHhcc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGSPANFEVYTAILK 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~-r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~-~SGt~A~~~a~~all~ 190 (358)
++|+.|++++.+.+.+.. +.++. .|..+......++ .+++++++++|++..+ +|.+ .++++++..++.++++
T Consensus 11 ~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~---~v~~~~g~t~al~~~~~~~~~ 84 (376)
T TIGR01977 11 PKPDEVYEAMADFYKNYG--GSPGRGRYRLALRASREVE-ETRQLLAKLFNAPSSA---HVVFTNNATTALNIALKGLLK 84 (376)
T ss_pred CCCHHHHHHHHHHHHhcC--CCCCcccchHHHHHHHHHH-HHHHHHHHHhCcCCCC---eEEEeCCHHHHHHHHHHhccC
Confidence 467899999987765432 12221 1111111122333 3678899999987531 3444 4677899999999999
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--CCCCCCH
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA--YPRDFDY 268 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~--~~~~~dl 268 (358)
+||+|++.+++|+++..... ......|. ++..++.+ +++.+|++++++.+++ ++++|++..++ +|...|+
T Consensus 85 ~gd~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~~~~-~~~~v~~~~~~n~tG~~~~~ 156 (376)
T TIGR01977 85 EGDHVITTPMEHNSVARPLE----CLKEQIGV--EITIVKCD-NEGLISPERIKRAIKT-NTKLIVVSHASNVTGTILPI 156 (376)
T ss_pred CCCEEEECcchhhHHHHHHH----HHHHHcCc--EEEEEecC-CCCCcCHHHHHHhcCC-CCeEEEEECCCCCccccCCH
Confidence 99999998876655421100 01123354 44444455 3568999999998864 78888776544 5678999
Q ss_pred HHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 269 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 269 ~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
++|.++|+++|+++++|++|++|... ..+. ++|++++|+||||.||.| |+++.+++
T Consensus 157 ~~i~~l~~~~~~~livD~a~~~g~~~-----~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~ 215 (376)
T TIGR01977 157 EEIGELAQENGIFFILDAAQTAGVIP-----IDMTELAIDMLAFTGHKGLLGPQGTGGLYIREG 215 (376)
T ss_pred HHHHHHHHHcCCEEEEEhhhccCccC-----CCchhcCCCEEEecccccccCCCCceEEEEcCC
Confidence 99999999999999999999988652 2232 899999999999999987 66665554
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=171.84 Aligned_cols=201 Identities=21% Similarity=0.275 Sum_probs=139.1
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEe-CCCHHHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGSPANFEVYTA 187 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~-~SGt~A~~~a~~a 187 (358)
++...+|+.|++++.+.+.... ..++..|.. .....++.+.+++.+++++|+++. +|.+ .+++.++..++.+
T Consensus 24 ~~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~l~~~ia~~~~~~~~----~v~~~~~~t~~l~~~~~~ 96 (397)
T TIGR01976 24 PAGTQIPQSVADAVSAALTRSN--ANRGGAYES-SRRADQVVDDAREAVADLLNADPP----EVVFGANATSLTFLLSRA 96 (397)
T ss_pred CccCCCCHHHHHHHHHHHHhcC--CCCCCCchH-HHHHHHHHHHHHHHHHHHcCCCCC----eEEEeCCHHHHHHHHHHH
Confidence 7777899999999988775432 122222211 112223334478889999999864 2444 4556677766666
Q ss_pred h---ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--C
Q 018300 188 I---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA--Y 262 (358)
Q Consensus 188 l---l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~--~ 262 (358)
+ ++|||+|++++++|.++... +. ..+...|..+ ..++++++++.+|++++++.+.+ ++++|++..++ +
T Consensus 97 ~~~~~~~gd~vl~~~~~~~s~~~~-~~---~~~~~~g~~~--~~~~~~~~~~~~~~~~l~~~i~~-~~~lv~i~~~~n~t 169 (397)
T TIGR01976 97 ISRRWGPGDEVIVTRLDHEANISP-WL---QAAERAGAKV--KWARVDEATGELHPDDLASLLSP-RTRLVAVTAASNTL 169 (397)
T ss_pred HHhcCCCCCEEEEcCCchHhHHHH-HH---HHHHhcCCEE--EEEeccccCCCcCHHHHHHhcCC-CceEEEEeCCCCCC
Confidence 4 78999999998876654321 10 1223456544 44445544578999999998864 68888876544 4
Q ss_pred CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 263 ~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
|...|+++|.++|+++|+++++|++|+.|.. +..+. ++|++++|+||++ ||+.|+++.+++
T Consensus 170 G~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~-g~~~G~l~~~~~ 232 (397)
T TIGR01976 170 GSIVDLAAITELVHAAGALVVVDAVHYAPHG-----LIDVQATGADFLTCSAYKFF-GPHMGILWGRPE 232 (397)
T ss_pred CccCCHHHHHHHHHHcCCEEEEehhhhcccc-----CCCHHHcCCCEEEEechhhc-CCceEEEEEcHH
Confidence 6788999999999999999999999976532 22232 7999999999987 788999998873
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=172.20 Aligned_cols=201 Identities=18% Similarity=0.181 Sum_probs=142.0
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCC-cCCCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceEEeCCCHHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYT 186 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~-r~~~G~~~~~~lE~~~~~~la~lfg~~-~~~~~v~V~~~SGt~A~~~a~~ 186 (358)
++..++|+.|++++...+...+ +++.. .+..+.+..+.+++ +|+.+++++|++ +++ .+++.++|+++..++.
T Consensus 23 a~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~r~~la~~~g~~~~~~---i~~t~g~t~~l~~~~~ 96 (398)
T TIGR03392 23 AATALKPQAVIDATQQFYRLSS--GTVHRSQHQQAQSLTARYEL-ARQQVARFLNAPDAEN---IVWTRGTTESINLVAQ 96 (398)
T ss_pred ccccCCCHHHHHHHHHHHHhcC--CCCCCcccHHHHHHHHHHHH-HHHHHHHHhCCCCCCe---EEEeCChHHHHHHHHH
Confidence 6666889999999988775443 34432 23334444445555 789999999995 431 2344456679999998
Q ss_pred Hh----ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-
Q 018300 187 AI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA- 261 (358)
Q Consensus 187 al----l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~- 261 (358)
++ ++|||+|++++++|.+.+.... ..+...|.. ++.+++++ ++.+|++++++.+.+ ++++|++..++
T Consensus 97 ~~~~~~~~~gd~Vl~~~~~~~s~~~~~~----~~~~~~g~~--v~~v~~~~-~~~~~~~~l~~~i~~-~t~lv~i~~~~n 168 (398)
T TIGR03392 97 SYARPRLQPGDEIIVSEAEHHANLIPWL----MVAQQTGAK--VVKLPIGA-DLLPDIRQLPELLTP-RTRILALGQMSN 168 (398)
T ss_pred HhhhccCCCCCEEEECCcchhHHHHHHH----HHHHHcCcE--EEEEecCC-CCCcCHHHHHHHhcc-CceEEEEECccc
Confidence 87 5899999999987765322110 112345654 44444553 467899999998864 78988876544
Q ss_pred -CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 262 -YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 262 -~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+|...|+++|.++|+++|+++++|++|+.|.. +..+. ++|++++|+|| +.||.| |+++.+++
T Consensus 169 ~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~-----~~~~~~~~~d~~~~s~~K-~~gp~G~G~l~~~~~ 234 (398)
T TIGR03392 169 VTGGCPDLARAITLAHQYGAVVVVDGAQGVVHG-----PPDVQALDIDFYAFSGHK-LYGPTGIGVLYGKTE 234 (398)
T ss_pred cccccCCHHHHHHHHHHcCCEEEEEhhhhcCCC-----CCChhhcCCCEEEEeccc-ccCCCceEEEEEcHH
Confidence 46788999999999999999999999987643 22222 78999999999 567877 88887763
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=168.84 Aligned_cols=199 Identities=20% Similarity=0.254 Sum_probs=141.7
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCC-CCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCC-HHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYT 186 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~-~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SG-t~A~~~a~~ 186 (358)
++..++++.|++++...+.+.+ ++|+.+.+ .+....+.+++ +++++++++|++++ +|.+++| |.|+..++.
T Consensus 5 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~r~~la~~~g~~~~----~v~~~~g~t~a~~~~l~ 77 (353)
T TIGR03235 5 NATTPIDPAVAEAMLPWLLEEF--GNPSSRTHEFGHNAKKAVER-ARKQVAEALGADTE----EVIFTSGATESNNLAIL 77 (353)
T ss_pred CCCCCCCHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHHH-HHHHHHHHhCCCCC----eEEEeCCHHHHHHHHHH
Confidence 4566889999999988775543 45654322 13333344444 78899999999874 3445554 669998888
Q ss_pred Hhc----cCC-CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC
Q 018300 187 AIL----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (358)
Q Consensus 187 all----~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~ 261 (358)
++. ++| |+|++.+.+|.++.... ..+...|. ++..++++ +++.+|++++++.++. ++++|++...+
T Consensus 78 ~l~~~~~~~g~~~vi~~~~~~~s~~~~~-----~~~~~~G~--~v~~v~~~-~~~~~d~~~l~~~l~~-~~~lv~~~~~~ 148 (353)
T TIGR03235 78 GLARAGEQKGKKHIITSAIEHPAVLEPI-----RALERNGF--TVTYLPVD-ESGRIDVDELADAIRP-DTLLVSIMHVN 148 (353)
T ss_pred HHHHhcccCCCCeeeEcccccHHHHHHH-----HHHHhcCC--EEEEEccC-CCCcCCHHHHHHhCCC-CCEEEEEEccc
Confidence 875 366 78888877665543221 12233455 44444455 3578999999998864 68888776544
Q ss_pred --CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 262 --YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 262 --~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+|...|+++|.++|+++|+++++|++|+.|.. +..++ ++|++++|+||+ .||.| |+++.+++
T Consensus 149 n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~D~~~~s~~K~-~gp~g~g~l~~~~~ 215 (353)
T TIGR03235 149 NETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKI-----TVDLSADRIDLISCSGHKI-YGPKGIGALVIRKR 215 (353)
T ss_pred CCceeccCHHHHHHHHHHcCCEEEEEchhhcCCc-----cccccccCCCEEEeehhhc-CCCCceEEEEEccC
Confidence 46788999999999999999999999998865 22333 799999999997 57887 88888875
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-19 Score=174.75 Aligned_cols=188 Identities=24% Similarity=0.233 Sum_probs=136.9
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
+|.+.|| |++..+.+|+. +++++|.+. .+.+.||+.|+..++.+++++||+|+++++.|++.+....
T Consensus 44 ~~~Y~R~--~npt~~~Le~~----lA~leg~e~-----ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~-- 110 (388)
T PRK08861 44 KYDYTRS--GNPNRGLLEQT----LSELESGKG-----AVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFN-- 110 (388)
T ss_pred CccccCC--CCchHHHHHHH----HHHHhCCCe-----EEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHH--
Confidence 3445554 55666777764 788999754 3566788899999999999999999999887776432100
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~ 290 (358)
......| +++..+ + ..|++++++.+.+ ++|+|++..+++| ...|+++|.++|+++|+++++|++|+.
T Consensus 111 --~~~~~~g--i~v~~v--d----~~d~e~l~~~i~~-~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~ 179 (388)
T PRK08861 111 --TRANKGD--FKVQFV--D----QSDAAALDAALAK-KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLT 179 (388)
T ss_pred --HHHhcCC--eEEEEE--C----CCCHHHHHHhcCc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccc
Confidence 0011122 344443 2 3588999988764 7899998777664 688999999999999999999999987
Q ss_pred cccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhhc-cCCcccccccc
Q 018300 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNA-VFPGLQVGFVS 354 (358)
Q Consensus 291 Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~~-~f~g~q~~~~~ 354 (358)
++. ..|++ |+|++++|+||+++||. ||+++++++ ++.+++... ...|..-+|+.
T Consensus 180 ~~~-----~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~-----~~~~~~~~~~~~~G~~~~p~~ 238 (388)
T PRK08861 180 PVL-----QKPLELGADFVIHSTTKYINGHSDVIGGVLITKTK-----EHAEELAWWGNCIGATGTPFD 238 (388)
T ss_pred ccc-----CCCcccCCCEEEeecceeccCCCcceeEEEEecHH-----HHHHHHHHHHhccCCCCChHH
Confidence 643 35677 99999999999999985 688888765 676766543 33455555554
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-18 Score=168.88 Aligned_cols=183 Identities=17% Similarity=0.166 Sum_probs=129.2
Q ss_pred CCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc
Q 018300 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK 190 (358)
Q Consensus 111 ~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~ 190 (358)
-+++|+.|++++.....+ | + + .+++.+.++++++++||.+. .+.+.+||.|+++++.++++
T Consensus 22 ~s~~~~~v~~a~~~~~~~-~---------~-~---~~~~~~~~~~~~a~~~g~~~-----~~~~~g~t~al~~al~al~~ 82 (363)
T TIGR01437 22 VSTVSDEVADAQKRGAQN-Y---------F-E---IKELVNKTGEYIANLLGVED-----AVIVSSASAGIAQSVAAVIT 82 (363)
T ss_pred CCCCCHHHHHHHHHHHhc-C---------C-C---HHHHHHHHHHHHHHhhCCCe-----EEEEcCHHHHHHHHHHHHhc
Confidence 455799999999876532 2 1 1 12445557788999999875 25677888999999999999
Q ss_pred CCC---------------EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEE
Q 018300 191 PHD---------------RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 255 (358)
Q Consensus 191 pGD---------------~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klI 255 (358)
+|| +|+++.+ |..++...+ ...+.+.|. ++++++++ +.+|++++++.+.+ ++|+|
T Consensus 83 ~Gd~~~~~~~~~s~~~~~eVi~~~~-~~~~~~~~~---~~~~~~~g~--~~v~v~~~---~~~d~~~le~ai~~-~t~ai 152 (363)
T TIGR01437 83 RGNRYLVENLHDSKIEVNEVVLPKG-HNVDYGAPV---ETMVRLGGG--KVVEAGYA---NECSAEQLEAAITE-KTAAI 152 (363)
T ss_pred CCCcchhhcccccccccceEEEECc-cchhcCCch---HHHHHhcCC--eEEEEcCC---CCCCHHHHHHhcCh-hceEE
Confidence 998 7777552 111110000 012344565 44554442 46999999999875 67866
Q ss_pred E-EcC-CC-CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCcCccCcEEEEEEeC
Q 018300 256 I-AGA-SA-YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKK 328 (358)
Q Consensus 256 i-~~~-s~-~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~ 328 (358)
+ ++. ++ ++...|+++|.++|+++|+++++|++|...+ ..... ++|++++|+||+|+||++|++++++
T Consensus 153 ~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~------~~~~~~g~D~~~~S~~K~l~gp~~G~l~~~~ 223 (363)
T TIGR01437 153 LYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL------QKYYRLGADLVIYSGAKAIEGPTSGLVLGKK 223 (363)
T ss_pred EEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch------HHHHHcCCCEEEEeCCcccCCCceEEEEEcH
Confidence 5 333 33 4568899999999999999999999997322 11123 7899999999999999999988865
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-19 Score=169.21 Aligned_cols=165 Identities=19% Similarity=0.166 Sum_probs=119.7
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~ 232 (358)
++++++++||++.. .+.++++|.|+.+++.++++|||+|++..+.|.++. ..+...|.....++.+.+
T Consensus 64 ~~~~~A~~~ga~~~----~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~--------~~~~~~g~~~~~v~~~~~ 131 (294)
T cd00615 64 AQELAARAFGAKHT----FFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVI--------NGLVLSGAVPVYLKPERN 131 (294)
T ss_pred HHHHHHHHhCCCCE----EEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHH--------HHHHHCCCEEEEecCccC
Confidence 56678999998762 333445567999999999999999999887544332 133456664444443333
Q ss_pred CC---CCCCCHHHHHHHhhh-cCCeEEEEcCCC-CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCC-CC-CC
Q 018300 233 ES---TGLVDYDMLEKTAIL-FRPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP-FK-YC 305 (358)
Q Consensus 233 ~~---~~~iD~d~le~~i~~-~~~klIi~~~s~-~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p-l~-ga 305 (358)
++ .+.+|++++++.+++ .++|+|++..++ +|...|+++|.++|+++|+++++|++|..++.+.+..+.. .. ++
T Consensus 132 ~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~ 211 (294)
T cd00615 132 PYYGIAGGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGA 211 (294)
T ss_pred cccCcCCCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCC
Confidence 22 137999999998864 357887775444 5778999999999999999999999998765544433322 23 89
Q ss_pred cEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 306 DVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 306 Div~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
|++++|+||+|+|+++ |++..+++
T Consensus 212 div~~S~hK~l~g~~~~~~l~~~~~ 236 (294)
T cd00615 212 DIVVQSTHKTLPALTQGSMIHVKGD 236 (294)
T ss_pred cEEEEchhcccchHhHHHHHHhCCC
Confidence 9999999999999865 67766664
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-18 Score=170.39 Aligned_cols=200 Identities=19% Similarity=0.214 Sum_probs=139.6
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCC-CCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA 187 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~-~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~a 187 (358)
++..++++.|++++...+...+ ++|+.+.+ .+....+.++ .+++.+++++|+++++ .+++.++|.++..++.+
T Consensus 10 aa~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~la~~~g~~~~~---v~~~~g~t~a~~~~l~~ 83 (402)
T TIGR02006 10 AATTPVDPRVAEKMMPYLTEKF--GNPASRSHSFGWEAEEAVE-NARNQVAELIGADSRE---IVFTSGATESNNLAIKG 83 (402)
T ss_pred CcCCCCCHHHHHHHHHHHHhcC--CCCChhhhHHHHHHHHHHH-HHHHHHHHHhCCCCCe---EEEeCCHHHHHHHHHHH
Confidence 5667889999999988775543 44543211 1222223344 4788899999998742 24445666799988776
Q ss_pred h----ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--
Q 018300 188 I----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-- 261 (358)
Q Consensus 188 l----l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-- 261 (358)
+ .++||+|++.+.+|.+.... +..+...|..+ ..++++ +++.+|++++++.+.+ ++++|++...+
T Consensus 84 l~~~~~~~g~~Vi~~~~~h~s~~~~-----~~~~~~~g~~v--~~v~~~-~~~~~d~~~l~~~l~~-~~~lv~v~~~~n~ 154 (402)
T TIGR02006 84 IAHFYKSKGNHIITSKTEHKAVLDT-----CRYLEREGFEV--TYLPPK-SNGLIDLEELKAAIRD-DTILVSIMHVNNE 154 (402)
T ss_pred HHHhhcCCCCEEEECCCccHHHHHH-----HHHHHhcCCEE--EEEccC-CCCcCCHHHHHHhcCC-CCEEEEEECCCcC
Confidence 5 37899999998776554321 11122345544 444455 3578999999998864 67888776554
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 262 ~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+|...|+++|.++|+++|+++++|++|++|.. +..+. ++|++++|+||+ .||.| |+++.+++
T Consensus 155 tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~-----~~~~~~~~~D~~~~s~~K~-~gp~G~G~l~~~~~ 219 (402)
T TIGR02006 155 IGVIQDIAAIGEICRERKVFFHVDAAQSVGKI-----PINVNELKVDLMSISGHKI-YGPKGIGALYVRRK 219 (402)
T ss_pred ceecccHHHHHHHHHHcCCEEEEEcchhcCCc-----ccCccccCCCEEEEehhhh-cCCCceEEEEEccC
Confidence 46788999999999999999999999998754 22232 799999999995 57876 78777764
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=173.06 Aligned_cols=186 Identities=13% Similarity=0.062 Sum_probs=135.2
Q ss_pred CCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccc
Q 018300 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (358)
Q Consensus 134 ~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (358)
|.+.|. |++..+.+|+. ++++.|.+.+ +.+.||+.|+.+++.+++++||+|++++..|++.....
T Consensus 54 ~~YsR~--~nPt~~~le~~----la~LEg~~~a-----~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~---- 118 (395)
T PRK08114 54 LFYGRR--GTLTHFSLQEA----MCELEGGAGC-----ALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFC---- 118 (395)
T ss_pred ccccCC--CChhHHHHHHH----HHHHhCCCeE-----EEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHH----
Confidence 445443 78888888874 7888888763 66789999999999999999999999877776643211
Q ss_pred hhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcC--CEEEEecccc
Q 018300 214 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVG--ALLMMDMAHI 289 (358)
Q Consensus 214 ~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g--~~livD~Ah~ 289 (358)
...+...|. ++..++ ..|.+++++.+++ ++|+|+++.+.++ ...|+++|+++||++| +++++|++|+
T Consensus 119 ~~~l~~~Gi--~v~~vd------~~d~~~l~~~l~~-~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a 189 (395)
T PRK08114 119 SKILSKLGV--TTTWFD------PLIGADIAKLIQP-NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWA 189 (395)
T ss_pred HHHHHhcCc--EEEEEC------CCCHHHHHHhcCC-CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCc
Confidence 011223454 333332 2477899998864 7899999877765 4789999999999985 9999999998
Q ss_pred ccccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhh-ccCCcccccccc
Q 018300 290 SGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN-AVFPGLQVGFVS 354 (358)
Q Consensus 290 ~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~-~~f~g~q~~~~~ 354 (358)
.++. ..|++ |+|++++|+||+|.|+. +|+++.++ ++.+++.. ....|..-+|+.
T Consensus 190 ~p~~-----~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~------~~~~~l~~~~~~~G~~~~p~~ 248 (395)
T PRK08114 190 AGVL-----FKALDFGIDISIQAGTKYLVGHSDAMIGTAVANA------RCWEQLRENSYLMGQMVDADT 248 (395)
T ss_pred cccc-----cCHHHcCCcEEEEcCcccccCCCcceeEEEEcCH------HHHHHHHHHHHhccCCCCHHH
Confidence 7754 35677 99999999999999994 57666554 44444443 233455556554
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-18 Score=170.83 Aligned_cols=201 Identities=19% Similarity=0.192 Sum_probs=141.4
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCC-cCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEe-CCCHHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGSPANFEVYT 186 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~-r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~-~SGt~A~~~a~~ 186 (358)
++..++++.|++++...+...+. ++.. .++.+.+..+.+++ +|+.+++++|++..+ +|.+ .++|+++..++.
T Consensus 39 a~~~~~p~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~---~v~~t~g~t~al~~i~~ 112 (424)
T PLN02855 39 AATSQKPAAVLDALQDYYEEYNS--NVHRGIHALSAKATDAYEL-ARKKVAAFINASTSR---EIVFTRNATEAINLVAY 112 (424)
T ss_pred ccccCCCHHHHHHHHHHHHhcCC--CCCCccchHHHHHHHHHHH-HHHHHHHHcCCCCCC---EEEEeCCHHHHHHHHHH
Confidence 56668899999999887654432 2221 22333344445554 789999999996321 3444 455678888887
Q ss_pred H----hccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-
Q 018300 187 A----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA- 261 (358)
Q Consensus 187 a----ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~- 261 (358)
+ .++|||+|++++++|.+.+.. +. ......|..+ ..+++++ ++.+|++++++.++. ++++|++...+
T Consensus 113 ~~~~~~~~~gd~vl~~~~~~~s~~~~-~~---~~a~~~g~~v--~~v~~~~-~~~~~~~~l~~~i~~-~t~lv~i~~~~n 184 (424)
T PLN02855 113 TWGLANLKPGDEVILSVAEHHSNIVP-WQ---LVAQKTGAVL--KFVGLTP-DEVLDVEQLKELLSE-KTKLVATHHVSN 184 (424)
T ss_pred HhhhhcCCCcCEEEECCCccHHHHHH-HH---HHHHHcCCEE--EEEecCC-CCCcCHHHHHHHhcc-CceEEEEeCccc
Confidence 5 368999999999877654321 10 1123446544 4444553 356999999998864 78998887654
Q ss_pred -CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 262 -YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 262 -~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+|...|+++|.++|+++|+++++|++|+.|.. +.++. ++|++++|+|| +.||.| |+++.+++
T Consensus 185 ~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K-~~gp~G~G~l~~~~~ 250 (424)
T PLN02855 185 VLGSILPVEDIVHWAHAVGAKVLVDACQSVPHM-----PVDVQTLGADFLVASSHK-MCGPTGIGFLWGKSD 250 (424)
T ss_pred cccccCCHHHHHHHHHHcCCEEEEEhhhhcCCc-----CCCchhcCCCEEEeeccc-ccCCCccEEEEEchh
Confidence 46789999999999999999999999987743 22333 78999999999 678887 88888874
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.7e-18 Score=167.12 Aligned_cols=195 Identities=12% Similarity=0.070 Sum_probs=141.3
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-ccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~pG 192 (358)
.++..++++...+...+. ++..+.+.++|+ ++++++|.+. .+.++|||.|+..++.++ ++||
T Consensus 9 ~~~~e~~a~~~~~~~~~~--------~~~g~~~~~~e~----~la~~~g~~~-----~v~~~sgt~aL~~~l~al~~~pG 71 (376)
T TIGR02379 9 VTGQELEYIAEAISEGKL--------SGDGPFSRRCET----WLENRTGTKK-----ALLTPSCTAALEMAALLLDIQPG 71 (376)
T ss_pred CCHHHHHHHHHHHHcCCc--------cCCcHHHHHHHH----HHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCCCc
Confidence 456667777776654321 111233445554 5778888875 366778899999998888 8999
Q ss_pred CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHH
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMR 272 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~ 272 (358)
|+|+++++.+.+.. ..+...|. +++.+++++++..+|++++++.++. ++|+|+..+ .+|...|+++|.
T Consensus 72 d~Viv~~~t~~~~~--------~~~~~~G~--~~v~vd~d~~~~~~d~~~le~~i~~-~tk~Iip~~-~~G~~~d~~~I~ 139 (376)
T TIGR02379 72 DEVIMPSYTFVSTA--------NAFVLRGA--KIVFVDIRPDTMNIDETLIESAITH-RTKAIVPVH-YAGVACDMDTIM 139 (376)
T ss_pred CEEEECCCCcHHHH--------HHHHHcCC--EEEEEecCCCcCCCCHHHHHHhcCc-CceEEEEeC-CCCCccCHHHHH
Confidence 99999987655432 13344565 5666677776678999999998864 789887543 468889999999
Q ss_pred HHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCc--C-ccCcEEEEEEeCCCCchhHHHHHHhhccC
Q 018300 273 QIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKS--L-RGPRGGMIFFKKDPVLGVELESAINNAVF 345 (358)
Q Consensus 273 ~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~--L-~Gp~GG~I~~~~~~~~~~~~~~~i~~~~f 345 (358)
++|+++|++|++|++|+.|....+. ++. ..|+.++|+|++ + .|++||+|+++++ ++.+++.....
T Consensus 140 ~la~~~~i~vIeDaa~~~g~~~~~~---~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~-----~~~~~~~~~~~ 208 (376)
T TIGR02379 140 ALANKHQLFVIEDAAQGVMSTYKGR---ALGSIGHLGTFSFHETKNYTSGGEGGALLINDQ-----AFIERAEIIRE 208 (376)
T ss_pred HHHHHCCCEEEEECccccCCccCCc---ccCCCCCEEEEeCCCCCcCcccCCceEEEECCH-----HHHHHHHHHHH
Confidence 9999999999999999987644432 233 458888998854 4 5779999999876 77777765443
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-18 Score=167.94 Aligned_cols=199 Identities=16% Similarity=0.204 Sum_probs=142.5
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCC-HHHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTA 187 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SG-t~A~~~a~~a 187 (358)
++..++++.|++++...+...+ +.++..+..+....+.++ .+++.+++++|++++ +|.+++| ++++..++.+
T Consensus 7 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~r~~la~~~g~~~~----~i~~~~g~t~a~~~~~~~ 79 (381)
T PRK02948 7 AATTPMSKEALQTYQKAASQYF--GNESSLHDIGGTASSLLQ-VCRKTFAEMIGGEEQ----GIYFTSGGTESNYLAIQS 79 (381)
T ss_pred CCCCCCCHHHHHHHHHHHHhcC--CCCccccHHHHHHHHHHH-HHHHHHHHHhCCCCC----eEEEeCcHHHHHHHHHHH
Confidence 5667889999999987776443 344444444444444454 478999999999864 3555555 7798888877
Q ss_pred hc----cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--
Q 018300 188 IL----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-- 261 (358)
Q Consensus 188 ll----~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-- 261 (358)
++ ++||+|++.+.+|.++.... ..+...|..+. .++++ +++.+|++++++.+++ ++++|++..++
T Consensus 80 ~~~~~~~~g~~vv~~~~~h~s~~~~~-----~~~~~~g~~v~--~v~~~-~~~~~d~~~l~~~l~~-~~~lv~~~~~~n~ 150 (381)
T PRK02948 80 LLNALPQNKKHIITTPMEHASIHSYF-----QSLESQGYTVT--EIPVD-KSGLIRLVDLERAITP-DTVLASIQHANSE 150 (381)
T ss_pred HHHhccCCCCEEEECCcccHHHHHHH-----HHHHhCCCEEE--EEeeC-CCCCCCHHHHHHhcCC-CCEEEEEECCcCC
Confidence 75 67999999887665543211 12334565444 44455 3578999999998764 67888876555
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 262 ~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
.|...|+++|.++|+++|+++++|++|.+|.. +..+. ++|++++|+||+ .||.| |+++.+++
T Consensus 151 tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~-----~~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~~~~ 215 (381)
T PRK02948 151 IGTIQPIAEIGALLKKYNVLFHSDCVQTFGKL-----PIDVFEMGIDSLSVSAHKI-YGPKGVGAVYINPQ 215 (381)
T ss_pred cEeehhHHHHHHHHHHcCCEEEEEChhhcccc-----ccCcccCCCCEEEecHHhc-CCCCcEEEEEEcCC
Confidence 45688999999999999999999999987743 22222 799999999996 57887 88887764
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-18 Score=169.24 Aligned_cols=200 Identities=18% Similarity=0.224 Sum_probs=138.8
Q ss_pred ccCCCCcHHHHHHHhhhhh--cccCCCCCCCcCC-CCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLT--NKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~--~~~~~G~pg~r~~-~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~ 185 (358)
++..++++.|++++...+. +.+ +.++.+.. .+....+.++ .+++++++++|+++++ .++..+||.|++.++
T Consensus 10 a~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~ia~~~g~~~~~---v~~~~g~t~al~~~l 83 (404)
T PRK14012 10 SATTPVDPRVAEKMMPYLTMDGTF--GNPASRSHRFGWQAEEAVD-IARNQIADLIGADPRE---IVFTSGATESDNLAI 83 (404)
T ss_pred cCCCCCCHHHHHHHHHHHHhcccC--cCCCchhhHHHHHHHHHHH-HHHHHHHHHcCcCcCe---EEEeCCHHHHHHHHH
Confidence 5667889999999988775 443 33432111 1111112344 3678899999998752 345567778998888
Q ss_pred HHh----ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC
Q 018300 186 TAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (358)
Q Consensus 186 ~al----l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~ 261 (358)
.++ +++||+|++++.+|.+.... +..+...|.. +..++++ +++.+|+++|++.++. ++++|++...+
T Consensus 84 ~~l~~~~~~~gd~Vi~~~~~~~s~~~~-----~~~~~~~g~~--~~~v~~~-~~g~~d~~~l~~~i~~-~t~lv~~~~~~ 154 (404)
T PRK14012 84 KGAAHFYQKKGKHIITSKTEHKAVLDT-----CRQLEREGFE--VTYLDPQ-SNGIIDLEKLEAAMRD-DTILVSIMHVN 154 (404)
T ss_pred HHHHHhhcCCCCEEEEecCccHHHHHH-----HHHHHhCCCE--EEEEccC-CCCcCCHHHHHHhcCC-CCEEEEEECcC
Confidence 766 47999999988776554321 1122234654 4444455 3678999999999864 78888776544
Q ss_pred --CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 262 --YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 262 --~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+|...|+++|.++|+++|+++++|++|++|.. +.++. ++|++++|+||. .||.| |+++.+++
T Consensus 155 n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~-----~~~~~~~~~D~~~~s~~K~-~gp~g~G~l~~~~~ 221 (404)
T PRK14012 155 NEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKV-----PIDLSKLKVDLMSFSAHKI-YGPKGIGALYVRRK 221 (404)
T ss_pred CCccchhhHHHHHHHHHHcCCEEEEEcchhcCCc-----ccCcccCCCCEEEEehhhc-cCCCceEEEEEecC
Confidence 56788999999999999999999999997754 22232 799999999994 57766 77777664
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.3e-18 Score=165.67 Aligned_cols=198 Identities=16% Similarity=0.070 Sum_probs=140.3
Q ss_pred cccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHH
Q 018300 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (358)
Q Consensus 104 ~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~ 183 (358)
.+-++|++..++++|++++..... . .+.++.+.+++ +++.+++++|+++.+. ..+++.|||.|+..
T Consensus 4 ~~l~~pgp~~~~~~v~~~~~~~~~-~-----------~~~~~~~~~~~-~r~~la~l~~~~~~~~-~i~~t~~~t~al~~ 69 (363)
T TIGR02326 4 YLLLTPGPLTTSRTVKEAMLFDWC-T-----------WDSDYNIVVEQ-IRQQLLALATAEEGYT-SVLLQGSGTFAVEA 69 (363)
T ss_pred eeEecCCCCCCCHHHHHHhCCCCC-C-----------CChHHHHHHHH-HHHHHHHHhCCCCCce-EEEEcCCCHHHHHH
Confidence 456789999999999999865331 1 12355566665 7899999999975311 23455688999999
Q ss_pred HHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc-CCeEEEEcC--C
Q 018300 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGA--S 260 (358)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~-~~klIi~~~--s 260 (358)
++.+++.+||++++... +.+...+. ..+...|..+..++ ++ +++.+|++++++.++.. +++++.+.+ +
T Consensus 70 ~~~~l~~~~~~vlv~~~---~~~~~~~~---~~a~~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~ 140 (363)
T TIGR02326 70 VIGSAVPKDGKLLVVIN---GAYGARIV---QIAEYLGIPHHVVD--TG-EVEPPDVVEVEAILAADPAITHIALVHCET 140 (363)
T ss_pred HHHhcCCCCCeEEEEeC---ChhhHHHH---HHHHHcCCceEEEe--CC-CCCCCCHHHHHHHHhhCCCccEEEEEeecC
Confidence 99999889988766442 22111100 12234565444444 44 35689999999988653 356554433 3
Q ss_pred CCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 261 AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 261 ~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
.+|...|+++|.++|+++|+++++|++|++|.. +.++. ++|++++|+||||.||.| |+++.+++
T Consensus 141 ~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~-----~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~ 207 (363)
T TIGR02326 141 TTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGI-----PIDIAELHIDYLISSANKCIQGVPGFGFVIARQA 207 (363)
T ss_pred CccccCcHHHHHHHHHHcCCEEEEEccccccCc-----ccchhhcCccEEEecCccccccCCcceEEEECHH
Confidence 467789999999999999999999999987643 22333 799999999999999988 99998874
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-17 Score=163.72 Aligned_cols=201 Identities=17% Similarity=0.106 Sum_probs=137.7
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~p 191 (358)
.....++.+...+.+.+ |+|...+..|.. ..++|+.++++++++||+++.+. .-+++++||++|+.++.+. +.|
T Consensus 34 ~~~~~~~~~~~~~~~n~--gnp~~~~~~g~~-~~~~e~~~~~~~a~l~g~~~~~~-~G~~TsGgTean~~a~~~ar~~~~ 109 (380)
T PRK02769 34 FDYSALKRFFSFSINNC--GDPYSKSNYPLN-SFDFERDVMNFFAELFKIPFNES-WGYITNGGTEGNLYGCYLARELFP 109 (380)
T ss_pred cCHHHHHHHHHhhhccC--CCccccCCCCCC-hHHHHHHHHHHHHHHhCCCCCCC-CEEEecChHHHHHHHHHHHHHhCC
Confidence 33455555555554443 566544332332 34688889999999999975432 1244566788988776544 468
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc--CCeEEEEcCC--CCCCCCC
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGAS--AYPRDFD 267 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~--~~klIi~~~s--~~~~~~d 267 (358)
+++|++++.+|.+.. +.....|.....++ ++ +++.+|+++|++.+++. +|.+|++... .+|...|
T Consensus 110 ~~~ii~s~~~H~Sv~--------ka~~~lg~~~~~V~--~~-~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp 178 (380)
T PRK02769 110 DGTLYYSKDTHYSVS--------KIARLLRIKSRVIT--SL-PNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDN 178 (380)
T ss_pred CcEEEeCCCceehHH--------HHHHHcCCCCceec--cC-CCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC
Confidence 899999887655432 23334454434444 44 36789999999998763 3777766543 3678899
Q ss_pred HHHHHHHHHHcC---CEEEEeccccccccccCCccCCCC---CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 268 YPRMRQIADAVG---ALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 268 l~~I~~ia~e~g---~~livD~Ah~~Gl~~~g~~~~pl~---gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+++|.++|+++| +++++|+||+.+....-....+++ ++|.+++|+||++.+|.| |+++.+++
T Consensus 179 i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~ 247 (380)
T PRK02769 179 IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKK 247 (380)
T ss_pred HHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehh
Confidence 999999999998 699999999876552111111233 799999999999888997 88888875
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=171.14 Aligned_cols=169 Identities=21% Similarity=0.232 Sum_probs=124.5
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
|++..+++|+ ++++++|.+. .+.++||+.|+.+++. +++|||+|+++++.|++...... ..+...|
T Consensus 45 ~~p~~~~le~----~la~l~g~~~-----~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~----~~~~~~G 110 (378)
T TIGR01329 45 GNPTRTALES----LLAKLDKADR-----AFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLT----QVVPRSG 110 (378)
T ss_pred CChHHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHH----HHHHHcC
Confidence 5565566665 4788999865 4667899999887665 78999999999887776432100 0122345
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
. ++..++. .|++++++.++ .++|+|++..+++ +...|+++|+++|+++|+++++|++|+.++. .
T Consensus 111 ~--~v~~vd~------~d~~~le~~i~-~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~-----~ 176 (378)
T TIGR01329 111 V--VVVHVDT------TDLDKVKAALG-PKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLL-----C 176 (378)
T ss_pred c--EEEEeCC------CCHHHHHHhcC-cCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence 4 3444332 38899999886 4789998876655 4578999999999999999999999876643 3
Q ss_pred CCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhhc
Q 018300 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 300 ~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
.|++ ++|++++|+||++.||. ||+++++++ ++.+++...
T Consensus 177 ~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~-----~~~~~~~~~ 219 (378)
T TIGR01329 177 NPLELGADIVYHSATKFLAGHSDVMAGVLAVKGE-----EIAKKVYFL 219 (378)
T ss_pred ChhhcCCcEEEEecceeccCCccceeEEEEeCcH-----HHHHHHHHH
Confidence 4566 89999999999999874 688888775 565666554
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.6e-18 Score=164.06 Aligned_cols=165 Identities=19% Similarity=0.192 Sum_probs=125.2
Q ss_pred HHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec
Q 018300 154 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (358)
Q Consensus 154 ~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~ 232 (358)
++.+++++|.+. .+.++|||.|+..++.++ ++|||+|+++.+.|.+.. ..+...|. ++..++++
T Consensus 24 ~~~la~~~~~~~-----~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~--------~~~~~~g~--~~~~~~~~ 88 (352)
T cd00616 24 EKAFAEYLGVKY-----AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATA--------NAILLLGA--TPVFVDID 88 (352)
T ss_pred HHHHHHHhCCCe-----EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHH--------HHHHHcCC--eEEEEecC
Confidence 445888999754 366789999999999998 799999999887654432 12334454 55566676
Q ss_pred CCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEc
Q 018300 233 ESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTT 311 (358)
Q Consensus 233 ~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S 311 (358)
++++.+|++++++.+. .++++|++.+ .+|...|+++|.++|+++|+++++|++|+.|....+. +++ .+|+.++|
T Consensus 89 ~~~~~~d~~~l~~~i~-~~~~~v~~~~-~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~---~~~~~~d~~~~S 163 (352)
T cd00616 89 PDTYNIDPELIEAAIT-PRTKAIIPVH-LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGR---KVGTFGDAGAFS 163 (352)
T ss_pred CCcCCcCHHHHHHhcC-cCCeEEEEEC-CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCE---EcccCcceeEEc
Confidence 5467899999999885 3788887753 4688889999999999999999999999988654332 233 46888888
Q ss_pred Cc--CcCccCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 312 TH--KSLRGPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 312 ~h--K~L~Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
+| |+|+++.||+++++++ ++.+++...
T Consensus 164 ~~~~K~~~~~~gg~~~~~~~-----~~~~~~~~~ 192 (352)
T cd00616 164 FHPTKNLTTGEGGAVVTNDE-----ELAERARLL 192 (352)
T ss_pred CCCCCCCcccCceEEEECCH-----HHHHHHHHH
Confidence 66 9998889999999875 666666543
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.6e-18 Score=167.66 Aligned_cols=201 Identities=19% Similarity=0.212 Sum_probs=140.8
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCc-CCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeC-CCHHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYT 186 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r-~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~-SGt~A~~~a~~ 186 (358)
++..++|+.|.+++...+...+ ++|... ++.+....+.+++ +++.+++++|++..+ +|.++ ++++++..++.
T Consensus 25 ~~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~r~~ia~~~~~~~~~---~v~~~~g~t~~l~~~~~ 98 (403)
T TIGR01979 25 AATSQKPQQVIDAVAEYYRNSN--ANVHRGIHTLSVRATEAYEA-VREKVAKFINAASDE---EIVFTRGTTESINLVAY 98 (403)
T ss_pred ccccCCCHHHHHHHHHHHHhCC--CCCCCCccHHHHHHHHHHHH-HHHHHHHHhCcCCCC---eEEEeCCHHHHHHHHHH
Confidence 6666889999999987766554 333321 2223333344554 788899999998321 34444 55568888877
Q ss_pred Hh----ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-
Q 018300 187 AI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA- 261 (358)
Q Consensus 187 al----l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~- 261 (358)
++ +++||+|++++++|.++..... ......|..++. ++++ +++.+|++++++.+.+ ++++|++..++
T Consensus 99 ~~~~~~~~~g~~vl~~~~~~~s~~~~~~----~~~~~~g~~~~~--v~~~-~~~~~~~~~l~~~i~~-~~~lv~~~~~~~ 170 (403)
T TIGR01979 99 SWGDSNLKAGDEIVISEMEHHANIVPWQ----LLAERTGATLKF--IPLD-DDGTLDLDDLEKLLTE-KTKLVAITHVSN 170 (403)
T ss_pred HhhhhcCCCCCEEEECcchhhHHHHHHH----HHHHhcCcEEEE--EecC-CCCCCCHHHHHHHhcc-CCeEEEEEcccc
Confidence 64 6899999999887766432110 122345654444 4455 4578999999998864 78988876544
Q ss_pred -CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 262 -YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 262 -~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+|...|+++|.++|+++|+++++|++|+.|.. +..+. ++|++++|+||++ ||.| |+++.+++
T Consensus 171 ~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~~-gp~G~g~l~~~~~ 236 (403)
T TIGR01979 171 VLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHM-----PVDVQALDCDFYVFSGHKMY-GPTGIGVLYGKEE 236 (403)
T ss_pred cccccCCHHHHHHHHHHcCCEEEEEchhhcCcc-----ccCccccCCCEEEEeccccc-CCCCceEEEEchH
Confidence 46789999999999999999999999987753 22222 7999999999965 7887 88888763
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.4e-18 Score=164.59 Aligned_cols=198 Identities=16% Similarity=0.169 Sum_probs=151.1
Q ss_pred cccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHH
Q 018300 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (358)
Q Consensus 104 ~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~ 183 (358)
.+.|+|++..+++.|+++|...+.++. ..++.+.+++ +.+.++.+|+.+..+ +.+...|||.|+.+
T Consensus 6 ~~Ll~PGP~~v~~~V~~am~~~~~~h~-----------s~~F~~~~~~-~~~~L~~v~~t~~~~--~~ll~gsGt~amEA 71 (383)
T COG0075 6 RLLLTPGPVPVPPRVLLAMARPMVGHR-----------SPDFVGIMKE-VLEKLRKVFGTENGD--VVLLSGSGTLAMEA 71 (383)
T ss_pred ceeeeCCCCCCCHHHHHHhcCCCCCCC-----------CHHHHHHHHH-HHHHHHHHhcCCCCc--EEEEcCCcHHHHHH
Confidence 467889999999999999987655433 2345555555 678899999998422 55667899999999
Q ss_pred HHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc-CCeEEEE--cCC
Q 018300 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIA--GAS 260 (358)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~-~~klIi~--~~s 260 (358)
++.++++|||+|++.. +|.+.+++. ..+...|..+..+. .. +...+|++++++.+++. +.++|.+ +.+
T Consensus 72 av~sl~~pgdkVLv~~---nG~FG~R~~---~ia~~~g~~v~~~~--~~-wg~~v~p~~v~~~L~~~~~~~~V~~vH~ET 142 (383)
T COG0075 72 AVASLVEPGDKVLVVV---NGKFGERFA---EIAERYGAEVVVLE--VE-WGEAVDPEEVEEALDKDPDIKAVAVVHNET 142 (383)
T ss_pred HHHhccCCCCeEEEEe---CChHHHHHH---HHHHHhCCceEEEe--CC-CCCCCCHHHHHHHHhcCCCccEEEEEeccC
Confidence 9999999999999976 466665542 23456676555444 33 34589999999999743 3566654 345
Q ss_pred CCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 261 AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 261 ~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
++|...|+++|+++|++||+++++|+.-++|-. +..++ |+|+++++.+|+|.+|.| |++..+++
T Consensus 143 STGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~-----~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~ 209 (383)
T COG0075 143 STGVLNPLKEIAKAAKEHGALLIVDAVSSLGGE-----PLKVDEWGIDVAITGSQKALGAPPGLAFVAVSER 209 (383)
T ss_pred cccccCcHHHHHHHHHHcCCEEEEEecccCCCc-----ccchhhcCccEEEecCchhccCCCccceeEECHH
Confidence 678888999999999999999999997665543 33445 899999999999999999 77777764
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-18 Score=171.86 Aligned_cols=192 Identities=17% Similarity=0.140 Sum_probs=134.6
Q ss_pred ccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHH
Q 018300 107 LIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT 186 (358)
Q Consensus 107 lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~ 186 (358)
+..+.+|..+.+.+++..... . ..++.+.|+ +++.++.+|+ ++++++|.+. .|.++||+.|+.+++.
T Consensus 36 i~~sstf~~~~~~~~~~~~~~-~-~~~~~Y~r~--~~pt~~~le~----~la~l~g~~~-----~v~fsSG~~Ai~~al~ 102 (437)
T PRK05613 36 IYQTTSYVFDSAEHAKQRFAL-E-DLGPIYSRL--TNPTVEALEN----RIASLEGGVH-----AVAFASGQAAETAAIL 102 (437)
T ss_pred EeCCCCcccCCHHHHHHhhcc-c-cCCceeeCc--cChHHHHHHH----HHHHHhCCCe-----EEEeCCHHHHHHHHHH
Confidence 334556665566555432111 1 123444443 5566666665 4888999865 4788999999999999
Q ss_pred HhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CC
Q 018300 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PR 264 (358)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~ 264 (358)
+++++||+|++++..|++..... ...+...|. ++..++ ++ .|++++++.+++ ++|+|++..+.+ +.
T Consensus 103 ~ll~~Gd~VI~~~~~y~~t~~~~----~~~l~~~Gi--~v~~vd-~~----~d~e~l~~~l~~-~tk~V~~e~~~Np~~~ 170 (437)
T PRK05613 103 NLAGAGDHIVTSPRLYGGTETLF----LVTLNRLGI--EVTFVE-NP----DDPESWQAAVQP-NTKAFFGETFANPQAD 170 (437)
T ss_pred HhcCCCCEEEECCCccHHHHHHH----HHHHHhcCe--EEEEEC-CC----CCHHHHHHhCCc-cCeEEEEECCCCCCCc
Confidence 99999999999988888763210 012233454 444443 22 288999998875 688888765544 46
Q ss_pred CCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeC
Q 018300 265 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK 328 (358)
Q Consensus 265 ~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~ 328 (358)
..|+++|+++|+++|+++++|++|+.|.. ..+++ |+|++++|+||+++|+. ||+++.+.
T Consensus 171 v~di~~I~~la~~~gi~livD~t~a~g~~-----~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~ 233 (437)
T PRK05613 171 VLDIPAVAEVAHRNQVPLIVDNTIATAAL-----VRPLELGADVVVASLTKFYTGNGSGLGGVLIDGG 233 (437)
T ss_pred ccCHHHHHHHHHHcCCeEEEECCCccccc-----cChHHhCCCEEEeeccceecCCCcceeEEEEecC
Confidence 89999999999999999999999987644 24566 99999999999988763 67777543
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-18 Score=169.01 Aligned_cols=167 Identities=19% Similarity=0.207 Sum_probs=124.8
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
+++.++++|+. +++++|.+. .+.++||+.|+..++.++++|||+|+++++.|+++.... ..+...|
T Consensus 51 ~np~~~~lE~~----lA~l~g~~~-----~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~-----~~~~~~g 116 (385)
T PRK08574 51 ENPTLRPLEEA----LAKLEGGVD-----ALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLL-----KSLEKFG 116 (385)
T ss_pred CCccHHHHHHH----HHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHH-----HHhhccC
Confidence 55666677664 788999875 366789999999999999999999999988777653210 1112234
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
. ++..+ .+|++++++.+++.++|+|+++.+++| ...|+++|+++|+++|+++++|++|+.|+..
T Consensus 117 ~--~v~~~-------~~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~----- 182 (385)
T PRK08574 117 V--KVVLA-------YPSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLY----- 182 (385)
T ss_pred c--EEEEE-------CCCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccC-----
Confidence 3 22221 246789999886547899998776665 5789999999999999999999999877542
Q ss_pred CCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHh
Q 018300 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 300 ~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~ 341 (358)
.+++ |+|++++|+||+|.||. ||+++++++ ++.+++.
T Consensus 183 ~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~-----~~~~~~~ 223 (385)
T PRK08574 183 RPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSG-----EFLEELW 223 (385)
T ss_pred ChhhhCCcEEEeeCceeecCCCCceeEEEEECcH-----HHHHHHH
Confidence 3455 89999999999999874 787777655 5656554
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-18 Score=169.94 Aligned_cols=162 Identities=17% Similarity=0.105 Sum_probs=120.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccC
Q 018300 141 GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT 220 (358)
Q Consensus 141 ~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~ 220 (358)
.|++..+.+|+. +++++|.+. .+.+.||+.|+..++.++++|||+|+++++.|++... +. . ......
T Consensus 47 ~gnPt~~~lE~~----lA~l~g~~~-----~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~--~~-~-~~~~~~ 113 (377)
T TIGR01324 47 RGTLTHFALQDA----MCELEGGAG-----CYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRY--FC-D-IVLKRM 113 (377)
T ss_pred CCCccHHHHHHH----HHHHhCCCc-----EEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHH--HH-H-HHHHhc
Confidence 367777777765 788999875 3667899999999999999999999998876654321 00 0 011223
Q ss_pred CceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccccccccCCc
Q 018300 221 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 298 (358)
Q Consensus 221 g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~ 298 (358)
|. ++..++.+ +.+++++.+++ ++|+|+++.++++ ...|+++|+++|+++|+++++|++|+.|...
T Consensus 114 gi--~v~~~d~~------~~e~l~~~i~~-~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~---- 180 (377)
T TIGR01324 114 GV--DITYYDPL------IGEDIATLIQP-NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLF---- 180 (377)
T ss_pred Cc--EEEEECCC------CHHHHHHhcCC-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccccc----
Confidence 44 33332221 22788888764 7899998766654 5789999999999999999999999988652
Q ss_pred cCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCC
Q 018300 299 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (358)
Q Consensus 299 ~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~ 329 (358)
.|++ |+|++++|++|+++|+. ||+++++++
T Consensus 181 -~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~ 214 (377)
T TIGR01324 181 -KPLEHGVDISIQAGTKYLVGHSDIMIGTVVANAR 214 (377)
T ss_pred -CccccCceEEEecCceeccCCCCceEEEEEeCHH
Confidence 4666 99999999999998874 588887763
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-18 Score=171.25 Aligned_cols=197 Identities=16% Similarity=0.223 Sum_probs=133.5
Q ss_pred HHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEE
Q 018300 117 AVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIM 196 (358)
Q Consensus 117 ~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl 196 (358)
++.+++...+... .+. |.+.+.+.++++ .++++||.++ .+.+.+|+.|+..++.++++||| |+
T Consensus 58 a~~~a~~~a~~~g-~~~------Y~~~~g~~~Lre----aia~~~~~~~-----vv~t~ggt~A~~~~~~all~pGD-Vi 120 (460)
T PRK13238 58 AMSDRQWAAMMRG-DEA------YAGSRSYYRLED----AVKDIFGYPY-----TIPTHQGRAAEQILFPVLIKKGD-VV 120 (460)
T ss_pred hhhHHHHHHHHhC-Ccc------cCCCCCHHHHHH----HHHHHhCCCc-----EEECCCHHHHHHHHHHHhCCCCC-EE
Confidence 3566665555321 122 333333445555 4788898865 35667889999999999999999 87
Q ss_pred ecCCCCCcccccccccchhccccCCceEEEEeceecC---------CCCCCCHHHHHHHhhh---cCCeEEEEcCCCCC-
Q 018300 197 GLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE---------STGLVDYDMLEKTAIL---FRPKLIIAGASAYP- 263 (358)
Q Consensus 197 ~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~iD~d~le~~i~~---~~~klIi~~~s~~~- 263 (358)
++++-+..+. ..+.+.|... +.+++++ ..+.+|+++|++.+.+ .++++|+++.++|+
T Consensus 121 i~~p~~~~~~--------~~i~~~G~~~--v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~Npt 190 (460)
T PRK13238 121 PSNYHFDTTR--------AHIELNGATA--VDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSA 190 (460)
T ss_pred ccCCcccchH--------HHHHHcCCEE--EEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCC
Confidence 7764322221 1234566644 4444432 2345999999999875 25789988776654
Q ss_pred --CCCC---HHHHHHHHHHcCCEEEEecccccc-cccc-----CCccCC--------CCCCcEEEEcCcCcCccCcEEEE
Q 018300 264 --RDFD---YPRMRQIADAVGALLMMDMAHISG-LVAA-----SVVADP--------FKYCDVVTTTTHKSLRGPRGGMI 324 (358)
Q Consensus 264 --~~~d---l~~I~~ia~e~g~~livD~Ah~~G-l~~~-----g~~~~p--------l~gaDiv~~S~hK~L~Gp~GG~I 324 (358)
...+ +++|.++|++||++|++|+||..+ +.+. +..... ..++|++++|++|.+.+|.||+|
T Consensus 191 GG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~GG~i 270 (460)
T PRK13238 191 GGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIGGLL 270 (460)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcceeEE
Confidence 3444 679999999999999999999764 2221 111111 13689999999999999999999
Q ss_pred EEeCCCCchhHHHHHHhhccC
Q 018300 325 FFKKDPVLGVELESAINNAVF 345 (358)
Q Consensus 325 ~~~~~~~~~~~~~~~i~~~~f 345 (358)
+++++ ++.++++...+
T Consensus 271 ~~~d~-----~l~~~~~~~~~ 286 (460)
T PRK13238 271 CFRDE-----DLFTECRTLCI 286 (460)
T ss_pred EcChH-----HHHHHhhhccc
Confidence 99975 78888877653
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-18 Score=168.29 Aligned_cols=168 Identities=25% Similarity=0.272 Sum_probs=125.2
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCc
Q 018300 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (358)
Q Consensus 143 ~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (358)
++...++|+ ++++++|.+.+ +.+.||+.|+.+++.++++|||+|+++++.|++...... ......|.
T Consensus 60 ~p~~~~Le~----~lA~~~g~~~~-----i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~----~~~~~~gi 126 (388)
T PRK07811 60 NPTRTALEE----QLAALEGGAYG-----RAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLID----KVFTRWGV 126 (388)
T ss_pred CccHHHHHH----HHHHHhCCCce-----EEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHH----HhCcCCCe
Confidence 344455555 57889999873 567899999999999999999999999887776432100 01111233
Q ss_pred eEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccccccccCCccC
Q 018300 223 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300 (358)
Q Consensus 223 ~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~ 300 (358)
++..++ ..|++++++.+.+ ++|+|++..++++ ...|+++|.++|+++|+++++|++++.+.. ..
T Consensus 127 --~~~~~d------~~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~-----~~ 192 (388)
T PRK07811 127 --EYTPVD------LSDLDAVRAAITP-RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYL-----QQ 192 (388)
T ss_pred --EEEEeC------CCCHHHHHHhcCc-CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCcccc-----CC
Confidence 333322 2589999998865 7899998766654 578999999999999999999999886643 24
Q ss_pred CCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhh
Q 018300 301 PFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 301 pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
|+. ++|++++|++|+++||. ||+|+++++ ++.+++..
T Consensus 193 p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~-----~l~~~~~~ 233 (388)
T PRK07811 193 PLALGADVVVHSTTKYIGGHSDVVGGALVTNDE-----ELDEAFAF 233 (388)
T ss_pred chhhCCcEEEecCceeecCCCCcEEEEEEECCH-----HHHHHHHH
Confidence 566 89999999999999873 798888776 66665554
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=168.02 Aligned_cols=195 Identities=15% Similarity=0.142 Sum_probs=130.1
Q ss_pred CCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc
Q 018300 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK 190 (358)
Q Consensus 111 ~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~ 190 (358)
-.+.++.|++++...+.+.....|.-.....|. ..+. +++.+++++|++++ +.++||+.|+..++. .+.
T Consensus 90 ~s~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~-r~~~----le~~lA~l~gae~a-----lvv~sg~aAi~l~l~-~l~ 158 (454)
T TIGR00474 90 RAPLAEEAIEAVTDAARGYSNLEYDLETGKRGS-RYSH----VEGLLCELTGAEDA-----LVVNNNAAAVLLALN-TLA 158 (454)
T ss_pred CCCCCHHHHHHHHHHHhcccchhccccccccch-HHHH----HHHHHHHHhCCCcE-----EEECCHHHHHHHHHH-HhC
Confidence 345799999999877764221111100001122 1233 45668999999873 557899999988884 479
Q ss_pred CCCEEEecCCC---CCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEc-CCCC---C
Q 018300 191 PHDRIMGLDLP---HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG-ASAY---P 263 (358)
Q Consensus 191 pGD~Vl~~~~~---~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~-~s~~---~ 263 (358)
+||+|++++.+ +||.+... ..+...|. ++..++.+ +..|++++++.+++ ++++|++. .+++ |
T Consensus 159 ~GdeVIvs~~e~v~~ggs~~i~-----~~~~~~G~--~~~~v~~~---~~~~l~dle~aI~~-~T~lv~~~h~sN~~~~G 227 (454)
T TIGR00474 159 KGKEVIVSRGELVEIGGSFRIP-----DVMEQSGA--KLVEVGTT---NRTHLKDYEDAITE-NTALLLKVHTSNYRIVG 227 (454)
T ss_pred CcCEEEECCChhhhhcchhhHH-----HHHHHcCC--EEEEeCCC---CCCCHHHHHHhcCc-CCEEEEEEccCcccccC
Confidence 99999998865 34432211 12234565 44444332 34688999998864 68887654 4443 2
Q ss_pred --CCCCHHHHHHHHHHcCCEEEEecccccccccc---------CCccCCCC-CCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 264 --RDFDYPRMRQIADAVGALLMMDMAHISGLVAA---------SVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 264 --~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~---------g~~~~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
...|+++|+++||++|+++++|++ +|.... +....+++ |+|++++|+||+|+||.+|+++++++
T Consensus 228 ~~~~~dl~~I~~la~~~g~~vivD~~--sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~~G~i~g~~~ 303 (454)
T TIGR00474 228 FTEEVSIAELVALGREHGLPVMEDLG--SGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQAGIIVGKKE 303 (454)
T ss_pred CCCCCCHHHHHHHHHHcCCeEEEECC--CcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCeEEEEEECHH
Confidence 368999999999999999999974 444311 11113344 89999999999999999999999875
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-18 Score=171.50 Aligned_cols=165 Identities=21% Similarity=0.236 Sum_probs=123.6
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
+|.++|+ +++.++++|+ ++++++|.++ .+.+.|||.|+.+++.+++++||+|++++.+|++.....
T Consensus 55 ~~~y~R~--~~p~~~~le~----~lA~l~g~~~-----av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~--- 120 (433)
T PRK08134 55 GHVYSRI--SNPTVAVLEE----RVAALEGGVG-----AIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLL--- 120 (433)
T ss_pred CceeecC--cChHHHHHHH----HHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHH---
Confidence 3444443 5566666665 4788999887 377899999999999999999999999988877642210
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~ 290 (358)
. ..+...|. ++..++++ |++++++.+++ ++|+|++...+++ ...|+++|.++|+++|+++++|++|+.
T Consensus 121 ~-~~l~~~Gi--~v~~vd~~------d~~~l~~~i~~-~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~ 190 (433)
T PRK08134 121 H-YTLRRFGI--ETTFVKPG------DIDGWRAAIRP-NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTT 190 (433)
T ss_pred H-HHHhhCCe--EEEEECCC------CHHHHHHhcCC-CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcc
Confidence 0 01122354 45554332 78999998875 7899988766654 679999999999999999999999987
Q ss_pred cccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEE
Q 018300 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFF 326 (358)
Q Consensus 291 Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~ 326 (358)
+.. +.|++ |+|++++|+||+++|+. ||+++.
T Consensus 191 ~~~-----~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~ 225 (433)
T PRK08134 191 PYL-----LRPFEHGADLVYHSATKFLGGHGTAIGGVLVD 225 (433)
T ss_pred ccc-----CCchhcCCCEEEeccccccCCCCCceEEEEEe
Confidence 764 34667 99999999999987775 466553
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-18 Score=168.12 Aligned_cols=190 Identities=24% Similarity=0.261 Sum_probs=133.1
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al 188 (358)
.+..+..+.+.++....... ..++++.|+ +++..+++|+ ++++++|.+. .+.++||+.|+..++.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~--~~~~~y~r~--~~p~~~~le~----~la~l~g~~~-----~v~~ssG~~Ai~~al~al 96 (390)
T PRK08133 30 LTSSFVFESAAEAAARFAGE--EPGNIYSRF--TNPTVTMFQE----RLAALEGAEA-----CVATASGMAAILAVVMAL 96 (390)
T ss_pred CCCCcccCCHHHHHHhhcCC--cCCceeECC--CChHHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHHHH
Confidence 34445555555555432221 124555554 3555555554 5888999876 366789999999999999
Q ss_pred ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCC
Q 018300 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDF 266 (358)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~ 266 (358)
++|||+|++.++.|++...... ..+...|. ++..+++ .|++++++.++. ++|+|+++.+++ +...
T Consensus 97 ~~~Gd~Vi~~~~~y~~t~~~~~----~~~~~~G~--~v~~vd~------~d~~~l~~~i~~-~tklV~ie~p~NptG~v~ 163 (390)
T PRK08133 97 LQAGDHVVSSRSLFGSTVSLFE----KIFARFGI--ETTFVDL------TDLDAWRAAVRP-NTKLFFLETPSNPLTELA 163 (390)
T ss_pred hCCCCEEEEccCcchhHHHHHH----HHHHHcCc--EEEEECC------CCHHHHHHhcCc-CCeEEEEECCCCCCCCcC
Confidence 9999999999887776532110 11223454 4444433 278999988864 789998866554 4678
Q ss_pred CHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCcCccC---cEEEEEEeCC
Q 018300 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKD 329 (358)
Q Consensus 267 dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp---~GG~I~~~~~ 329 (358)
|+++|.++|+++|+++++|++|+.+.. ..|+. ++|++++|+||+++|+ -||+|+++++
T Consensus 164 dl~~I~~la~~~gi~livD~t~~~~~~-----~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~ 225 (390)
T PRK08133 164 DIAALAEIAHAAGALLVVDNCFCTPAL-----QQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKE 225 (390)
T ss_pred CHHHHHHHHHHcCCEEEEECCCccccc-----CCchhhCCcEEEeecceeecCCcceEeEEEEcCHH
Confidence 999999999999999999999875543 24556 8999999999999765 3688888764
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-18 Score=168.90 Aligned_cols=180 Identities=15% Similarity=0.114 Sum_probs=126.9
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
|++....+|+ +++++.|.+. .+.+.||+.|+..++.++++|||+|+++++.|++..... ...+...|
T Consensus 59 ~npt~~~Le~----~iA~le~~~~-----~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~----~~~l~~~G 125 (394)
T PRK09028 59 GTPTHFAFQA----AIVELEGGAG-----TALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLC----DKILKGFG 125 (394)
T ss_pred CCchHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHH----HHhhhhcc
Confidence 3444455655 4777877764 356789999999999999999999999988776643211 01112234
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCCHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
. ++..++. .|.+.+++.+.+ ++|+|+++.++|++ ..|+++|+++|+++|+++++|++|+.++. .
T Consensus 126 i--~v~~v~~------~~~e~l~~~l~~-~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~-----~ 191 (394)
T PRK09028 126 I--ETTYYDP------MIGEGIRELIRP-NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPIN-----S 191 (394)
T ss_pred e--EEEEECC------CCHHHHHHhcCc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccccc-----C
Confidence 3 3333221 145788888764 78999998877764 78999999999999999999999987642 3
Q ss_pred CCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhh-ccCCcccccccc
Q 018300 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN-AVFPGLQVGFVS 354 (358)
Q Consensus 300 ~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~-~~f~g~q~~~~~ 354 (358)
.|++ |+|+++.|+|||+.|+. +|+++.++ ++.+++.. ....|...+|+.
T Consensus 192 ~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~------~~~~~l~~~~~~~G~~~~p~~ 245 (394)
T PRK09028 192 RPFEMGVDISIQAATKYIVGHSDVMLGTATANE------KHWDQLREHSYLMGQCTSPDD 245 (394)
T ss_pred CccccCceEEEEeCCeEecCCCCEEEEEEECCH------HHHHHHHHHHHhcCCCCCHHH
Confidence 5777 99999999999999985 57766544 45555543 223455555554
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.7e-18 Score=167.73 Aligned_cols=167 Identities=20% Similarity=0.243 Sum_probs=125.0
Q ss_pred CCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccc
Q 018300 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (358)
Q Consensus 134 ~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (358)
|.+.|| +++.++++|+ ++++++|.+. .+.+.||+.|+..++.++++|||+|++++..|++.+...
T Consensus 62 ~~Y~r~--~~p~~~~le~----~lA~l~g~~~-----al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~---- 126 (403)
T PRK07810 62 FVYSRY--GNPTVSMFEE----RLRLIEGAEA-----CFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVC---- 126 (403)
T ss_pred cceeCC--CCchHHHHHH----HHHHHhCCCc-----EEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHH----
Confidence 444443 4555666766 4788999876 477899999999999999999999999886666543210
Q ss_pred hhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEecccccc
Q 018300 214 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISG 291 (358)
Q Consensus 214 ~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~G 291 (358)
...+...|. ++..++. .|++++++.+++ ++|+|+++.+++ +...|+++|.++|+++|+++++|++|+.+
T Consensus 127 ~~~~~~~G~--~v~~vd~------~d~~~l~~ai~~-~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~ 197 (403)
T PRK07810 127 NEILPRWGV--ETVFVDG------EDLSQWEEALSV-PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATP 197 (403)
T ss_pred HHHHHHcCc--EEEEECC------CCHHHHHHhcCc-CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 012233454 4444332 388999998864 789999876665 45789999999999999999999999876
Q ss_pred ccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCC
Q 018300 292 LVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (358)
Q Consensus 292 l~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~ 329 (358)
... .+++ |+|++++|++|++.|+. ||+|+++++
T Consensus 198 ~~~-----~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~ 234 (403)
T PRK07810 198 LLQ-----RGLPLGADVVVYSGTKHIDGQGRVLGGAILGDRE 234 (403)
T ss_pred ccC-----ChhhcCCcEEEccCCceecCCcCceeEEEEeChH
Confidence 542 3456 89999999999998754 799998875
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=163.36 Aligned_cols=199 Identities=15% Similarity=0.224 Sum_probs=140.8
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC-CCCCCcceEEeC-CCHHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPL-SGSPANFEVYT 186 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~-~~~~~~v~V~~~-SGt~A~~~a~~ 186 (358)
++..++++.|++++...+.+.+ ++|++.+..+......+++ +++.+++.+|+ +++ +|.++ ++++++..++.
T Consensus 6 aa~~~~~~~v~~~~~~~~~~~~--~n~~~~~~~~~~~~~~l~~-a~~~~~~~~~~~~~~----~i~~t~g~teal~~~~~ 78 (382)
T TIGR03403 6 NATTMLDPKVKELMDPFFCDIY--GNPNSLHQFGTATHPAIAE-ALDKLYKGINARDLD----DIIITSCATESNNWVLK 78 (382)
T ss_pred cCCCCCCHHHHHHHHHHHHhcC--cCCccccHHHHHHHHHHHH-HHHHHHHHcCcCCCC----eEEEeCCHHHHHHHHHH
Confidence 5667889999999988877655 3555444444555566766 56667778887 443 35555 45669998888
Q ss_pred Hhc-----cC-CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCC
Q 018300 187 AIL-----KP-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (358)
Q Consensus 187 all-----~p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s 260 (358)
++. ++ ||+|++++.+|.++.... ..+...|..+ ..++++ +++.+|++++++.+.. ++++|++..+
T Consensus 79 ~~~~~~~~~~~~~~vi~~~~e~ps~~~~~-----~~~~~~G~~v--~~v~~~-~~g~~d~~~l~~~i~~-~t~lv~~~~~ 149 (382)
T TIGR03403 79 GVYFDEILKGGKNHIITTEVEHPAVRATC-----AFLESLGVEV--TYLPIN-EQGTITAEQVREAITE-KTALVSVMWA 149 (382)
T ss_pred HHHHhhcccCCCCEEEEcCCccHHHHHHH-----HHHHHCCCEE--EEEecC-CCCCCCHHHHHHhccc-CCeEEEEEcc
Confidence 762 55 478999887776653321 1223446544 444455 3578999999998864 6788877654
Q ss_pred C--CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCC-C-CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 261 A--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K-YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 261 ~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl-~-gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+ +|...|+++|.++|+++|+++++|++|+.|.. +..+ + ++|++++|+||+ .||.| |+++.+++
T Consensus 150 ~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~-----~~~~~~~~~D~~~~s~~K~-~gp~G~g~l~vr~~ 217 (382)
T TIGR03403 150 NNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKI-----PVDVQKAGVDFLSFSAHKF-HGPKGVGGLYIRKG 217 (382)
T ss_pred cCCCccccCHHHHHHHHHHcCCEEEEechhhcCCC-----ccCccccCCCEEEEcchhh-CCCCceEEEEECCC
Confidence 4 46788999999999999999999999987643 2222 2 799999999996 67887 88887765
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-17 Score=164.87 Aligned_cols=195 Identities=16% Similarity=0.150 Sum_probs=129.4
Q ss_pred CCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc
Q 018300 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK 190 (358)
Q Consensus 111 ~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~ 190 (358)
-.+.++.|++++...+.+.....|.......| +.++. +++.+++++|++.. +.++||+.|+..++.+ +.
T Consensus 95 ~s~l~~~v~eav~~~~~~~~~le~~l~~g~~g-~r~~~----~e~~lA~l~Gae~a-----~vv~sgtaAl~l~l~~-l~ 163 (464)
T PRK04311 95 RALLSEAAIEAVTEAARGYSNLEYDLATGKRG-SRDRA----LAALLCALTGAEDA-----LVVNNNAAAVLLALNA-LA 163 (464)
T ss_pred CCCCCHHHHHHHHHHHhcccccccchhhcccc-hHHHH----HHHHHHHHhCCCeE-----EEECCHHHHHHHHHHH-hC
Confidence 34679999999987765421111100000112 22233 45668999999863 5678999999988865 68
Q ss_pred CCCEEEecCCCC---CcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC-CCC----
Q 018300 191 PHDRIMGLDLPH---GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA-SAY---- 262 (358)
Q Consensus 191 pGD~Vl~~~~~~---ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~-s~~---- 262 (358)
+||+|++++.++ ||.+... ..+...|. ++..++.+ +..+++++++.+++ ++++|++.+ +++
T Consensus 164 ~GdeVIvs~~e~~~~ggs~~i~-----~~~~~~G~--~l~~v~~~---~~t~~~dle~aI~~-~TklV~~vh~sN~~i~G 232 (464)
T PRK04311 164 AGKEVIVSRGELVEIGGAFRIP-----DVMRQAGA--RLVEVGTT---NRTHLRDYEQAINE-NTALLLKVHTSNYRIEG 232 (464)
T ss_pred CCCEEEEcchhhhhcCcchhhH-----HHHHHCCc--EEEEECCC---CCCCHHHHHHhcCc-cCeEEEEEcCCCccccc
Confidence 999999987543 2222110 12234565 44444432 34678999998875 688876644 443
Q ss_pred -CCCCCHHHHHHHHHHcCCEEEEeccccccccc---------cCCccCCCC-CCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 263 -PRDFDYPRMRQIADAVGALLMMDMAHISGLVA---------ASVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 263 -~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~---------~g~~~~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
+...|+++|+++||++|+++++|+++ |... ......+++ |+|++++|+||+|+||.+|+|+++++
T Consensus 233 ~~~~~dl~eI~~lak~~gi~vivD~gs--G~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~~~ 308 (464)
T PRK04311 233 FTKEVSLAELAALGKEHGLPVVYDLGS--GSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQAGIIVGKKE 308 (464)
T ss_pred cCCcCCHHHHHHHHHHcCCeEEEECCC--cccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCceEEEEEcHH
Confidence 24689999999999999999999953 3221 111123445 89999999999999999999999874
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-17 Score=160.13 Aligned_cols=205 Identities=13% Similarity=0.084 Sum_probs=139.6
Q ss_pred ccccccCCCCcHHHHHHHhhhhhcccCCCCCCC-cC---CCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHH
Q 018300 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGK-RY---YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (358)
Q Consensus 105 i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~-r~---~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A 180 (358)
++-|.+..++.+.+++++...... + +.|.. .. ..+.+.+.+ +++.+++++|++. .+.+.++++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~----l~~~la~~~g~~~-----i~~~~g~t~a 71 (361)
T cd06452 4 IDPIQRGGRLTPEARKALIEWGDG-Y--SVCDFCRGRLDEIEKPPIKD----FHHDLAEFLGMDE-----ARVTPGAREG 71 (361)
T ss_pred CChhhcCCCCCHHHHHHHHHHhcc-c--CCccccccccccccCchHHH----HHHHHHHHcCCce-----EEEeCCHHHH
Confidence 455677888999999999876521 1 22211 00 111233333 4556889999943 2444556679
Q ss_pred HHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhh------cCCe
Q 018300 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAIL------FRPK 253 (358)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~------~~~k 253 (358)
+..++.++++|||+|+++++.|.+.. ..+...|.. ++.++.+++ ++.+|++++++.++. .+++
T Consensus 72 l~~~l~~~~~~gd~Vl~~~~~~~~~~--------~~~~~~g~~--~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 141 (361)
T cd06452 72 KFAVMHSLCEKGDWVVVDGLAHYTSY--------VAAERAGLN--VREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPA 141 (361)
T ss_pred HHHHHHHhcCCCCEEEEcCCcchHHH--------HHHHhcCCE--EEEEecCCCCCcccCHHHHHHHHHHHhhccCCCce
Confidence 99999999999999999876443321 123455654 444445532 248999999988753 2678
Q ss_pred EEEEcCCC--CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCC-C-CCcEEEEcCcCcCccC-cEEEEEEeC
Q 018300 254 LIIAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K-YCDVVTTTTHKSLRGP-RGGMIFFKK 328 (358)
Q Consensus 254 lIi~~~s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl-~-gaDiv~~S~hK~L~Gp-~GG~I~~~~ 328 (358)
+|++..++ +|...|+++|.++|+++|+++++|++|+.|.. +.+. + ++|++++|+||+|++| ++|++++++
T Consensus 142 lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~ 216 (361)
T cd06452 142 LALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRM-----PVSGKELGADFIVGSGHKSMAASAPIGVLATTE 216 (361)
T ss_pred EEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCc-----CCCHHHcCCCEEEecCCccccCCCCeEEEEECH
Confidence 88876654 45678999999999999999999999987643 1122 2 7899999999999654 569988876
Q ss_pred CCCchhHHHHHHhh
Q 018300 329 DPVLGVELESAINN 342 (358)
Q Consensus 329 ~~~~~~~~~~~i~~ 342 (358)
++.+++..
T Consensus 217 ------~~~~~l~~ 224 (361)
T cd06452 217 ------EWADIVFR 224 (361)
T ss_pred ------HHHHHHhc
Confidence 45555544
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8e-17 Score=158.95 Aligned_cols=200 Identities=17% Similarity=0.168 Sum_probs=142.2
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCC-CcceEEeCCCHHHHHHHHHHhc--c
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENK-WGVNVQPLSGSPANFEVYTAIL--K 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~-~~v~V~~~SGt~A~~~a~~all--~ 190 (358)
....+++++...+.+.+ |+|...+..|.. ..++|+.++++++++||+++++ || +++++||+||+.++.+.. .
T Consensus 35 ~~~~~~~~~~~~~~~~~--gnP~s~~~~g~~-a~~~e~~v~~~ia~llg~~~~~~~G--~fTsGGTEaNl~al~~ar~~~ 109 (374)
T PLN03032 35 FDYGELSQLMKYSINNL--GDPFIESNYGVH-SRQFEVGVLDWFARLWELEKDEYWG--YITTCGTEGNLHGILVGREVF 109 (374)
T ss_pred cChHHHHHHHHhcccCC--CCCcccCCCCcc-HHHHHHHHHHHHHHHhCCCCccCCE--EEeCchHHHHHHHHHHHHHhC
Confidence 55568888887776654 778765444443 4578888999999999998754 32 556788999998887642 3
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc--CCeEEEEc--CCCCCCCC
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAG--ASAYPRDF 266 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~--~~klIi~~--~s~~~~~~ 266 (358)
++++|+++..+|.+.. +.+...+..++.+ +++ .++.+|+++|++.+.+. +|.+|++. .+.+|...
T Consensus 110 ~~~~vi~s~~~H~Sv~--------kaa~~lg~~~~~V--~~d-~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~id 178 (374)
T PLN03032 110 PDGILYASRESHYSVF--------KAARMYRMEAVKV--PTL-PSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVD 178 (374)
T ss_pred CCcEEEeCCCceeHHH--------HHHHHcCCCCeEe--eeC-CCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCC
Confidence 5668888776543321 2344455544444 455 46899999999998753 46666663 34578899
Q ss_pred CHHHHHHHHHHcC-----CEEEEeccccccccccCC-cc-CCCC-CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 267 DYPRMRQIADAVG-----ALLMMDMAHISGLVAASV-VA-DPFK-YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 267 dl~~I~~ia~e~g-----~~livD~Ah~~Gl~~~g~-~~-~pl~-gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
|+++|+++|+++| +++++|+|++.+...... .+ ..+. ++|.+++|+||++..|.| |+++++++
T Consensus 179 pi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~ 250 (374)
T PLN03032 179 DLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKK 250 (374)
T ss_pred CHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEch
Confidence 9999999999997 589999999876542110 01 1222 799999999998766998 89999875
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=165.94 Aligned_cols=167 Identities=20% Similarity=0.197 Sum_probs=124.4
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
||.+.|| +++.++++|+ ++++++|.++ .+.++||+.|+..++.++++|||+|+++++.|++++...
T Consensus 50 ~~~y~r~--~~p~~~~le~----~lA~l~g~~~-----av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~--- 115 (391)
T TIGR01328 50 GYIYSRL--GNPTVSNLEG----RIAFLEGTEA-----AVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALL--- 115 (391)
T ss_pred CCceeCC--CCchHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHH---
Confidence 4545454 4566667776 4889999986 367889999999999999999999999988776543210
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~ 290 (358)
...+...|. ++..++++ |++++++.+.+ ++|+|+++.+++ +...|+++|.++|+++|+++++|++|+.
T Consensus 116 -~~~~~~~G~--~~~~vd~~------d~e~l~~~i~~-~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~ 185 (391)
T TIGR01328 116 -EHALTKFGI--QVDFINMA------IPEEVKAHIKD-NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFAT 185 (391)
T ss_pred -HHHHhcCCe--EEEEECCC------CHHHHHHhhcc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCch
Confidence 011223454 44443332 78999988764 789998876654 4578999999999999999999999986
Q ss_pred cccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeC
Q 018300 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK 328 (358)
Q Consensus 291 Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~ 328 (358)
+.. ..+++ ++|++++|++|+++|+. ||++++++
T Consensus 186 ~~~-----~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~ 222 (391)
T TIGR01328 186 PML-----TNPVALGVDVVVHSATKYIGGHGDVVAGLICGKA 222 (391)
T ss_pred hcc-----CCchhcCCCEEEccccccccCCCCceEEEEEcCH
Confidence 643 24556 89999999999998764 68888766
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=166.90 Aligned_cols=168 Identities=23% Similarity=0.277 Sum_probs=124.2
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
+|.+.|| +++..+++|+ ++++++|++++ +.+.||+.|+..++.++++|||+|+++++.|+++.....
T Consensus 56 ~~~y~r~--~~p~~~~Le~----~lA~l~G~~~~-----~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~-- 122 (398)
T PRK07504 56 GFIYSRY--SNPTVDMFEK----RMCALEGAEDA-----RATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVE-- 122 (398)
T ss_pred CceeecC--CCchHHHHHH----HHHHHhCCCee-----eEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHH--
Confidence 3444444 3455566665 47889999874 346799999998888889999999999887777532110
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~ 290 (358)
......|. ++..+ + .+|++++++.+++ ++|+|+++.++++ ...|+++|.++|+++|+++++|++|+.
T Consensus 123 --~~~~~~G~--~v~~v--d----~~d~e~l~~ai~~-~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~ 191 (398)
T PRK07504 123 --TLLPRYGI--ESTLV--D----GLDLDNWEKAVRP-NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFAT 191 (398)
T ss_pred --HHHhhcCe--EEEEE--C----CCCHHHHHHhcCc-CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccc
Confidence 01122343 44443 2 3789999998864 7899998777764 688999999999999999999999986
Q ss_pred cccccCCccCCCC-CCcEEEEcCcCcCccC---cEEEEEEeCC
Q 018300 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKD 329 (358)
Q Consensus 291 Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp---~GG~I~~~~~ 329 (358)
+.. ..+++ ++|++++|+||++.|+ -||+++++++
T Consensus 192 ~~~-----~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~ 229 (398)
T PRK07504 192 PLF-----QKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKA 229 (398)
T ss_pred ccc-----CCchhhCCCEEEeeccccccCCccceEEEEEeCcH
Confidence 643 24556 8999999999999765 3688888775
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=165.42 Aligned_cols=175 Identities=18% Similarity=0.193 Sum_probs=127.4
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
+|.+.|+ +++.++.+|+. +++++|.+.. +.++||+.|+.+++ ++++|||+|+++++.|++.+....
T Consensus 41 ~~~y~r~--~~p~~~~Le~~----la~l~g~~~a-----l~~~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~-- 106 (380)
T PRK06176 41 GYEYSRS--GNPTRFALEEL----IADLEGGVKG-----FAFASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFD-- 106 (380)
T ss_pred CCcccCC--CChhHHHHHHH----HHHHhCCCCE-----EEECCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHH--
Confidence 4555554 55666777764 7889998763 67899999998666 578999999999887776542110
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~ 290 (358)
..+...|. ++..++ ..|++++++.+++ ++++|++..++++ ...|+++|.++|+++|+++++|++++.
T Consensus 107 --~~~~~~gi--~v~~vd------~~d~e~l~~ai~~-~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~ 175 (380)
T PRK06176 107 --KVLVKNGL--SCTIID------TSDLSQIKKAIKP-NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT 175 (380)
T ss_pred --HHHHhcCe--EEEEcC------CCCHHHHHHhcCc-CceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccc
Confidence 11223343 434332 2488999998764 7899988766654 578999999999999999999999875
Q ss_pred cccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhh
Q 018300 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 291 Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+.. ..|++ ++|++++|++|++.||. ||+++++++ ++.+++..
T Consensus 176 ~~~-----~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~-----~~~~~~~~ 221 (380)
T PRK06176 176 PYY-----QNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNE-----ALAQEIAF 221 (380)
T ss_pred ccc-----CCccccCCCEEEecCceeccCCccceeeEEEecHH-----HHHHHHHH
Confidence 532 24566 99999999999998875 788888765 56555543
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=159.53 Aligned_cols=201 Identities=18% Similarity=0.229 Sum_probs=139.9
Q ss_pred ccCCCC----cHHHHHHHhhhhhcccCCCCC-CCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHH
Q 018300 109 ASENFT----SRAVMEAVGSCLTNKYSEGLP-GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (358)
Q Consensus 109 as~n~~----s~~V~~al~~~l~~~~~~G~p-g~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~ 183 (358)
.+++|. .|.|++++.+.+...+ .+.. ++.+..|.+...++|+ ++++++|.+. .++++||+.||..
T Consensus 60 ~~~~YL~l~~~p~v~~a~~~~~~~~~-~~~~~s~~~~~~~~~~~~le~----~la~~~g~~~-----~~~~~sG~~An~~ 129 (407)
T PRK07179 60 QSNDYLNLSGHPDIIKAQIAALQEEG-DSLVMSAVFLHDDSPKPQFEK----KLAAFTGFES-----CLLCQSGWAANVG 129 (407)
T ss_pred ecCCccCCCCCHHHHHHHHHHHHHhC-CCCCccccccCCchHHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHH
Confidence 566665 7999999988775432 1111 3345555555556654 5889999875 3668899999999
Q ss_pred HHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--
Q 018300 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-- 261 (358)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-- 261 (358)
++.++..+||.|++..+.|.+.. ..+...+. ++.+++ ..|++++++.+++.++++|++...+
T Consensus 130 ~l~~l~~~g~~v~~~~~~h~s~~--------~~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~lV~v~~v~n~ 193 (407)
T PRK07179 130 LLQTIADPNTPVYIDFFAHMSLW--------EGVRAAGA--QAHPFR------HNDVDHLRRQIERHGPGIIVVDSVYST 193 (407)
T ss_pred HHHHhCCCCCEEEEECCcCHHHH--------HHHHHCCC--eEEEec------CCCHHHHHHHHHhcCCeEEEECCCCCC
Confidence 99999999999998765433221 12223443 333332 3689999998865457888886544
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEEecccccccccc-CC--c-cCCCC-CCcEEEEcCcCcCccCcEEEEEEeCCCCchhHH
Q 018300 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV--V-ADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVEL 336 (358)
Q Consensus 262 ~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~--~-~~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~ 336 (358)
.|...|+++|.++|+++|++|++|++|+.|.... |. . ...+. .+|++++|+||+++ +++|++++++ ++
T Consensus 194 tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g-~~~G~l~~~~------~~ 266 (407)
T PRK07179 194 TGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFA-GRAGIITCPR------EL 266 (407)
T ss_pred CCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhh-ccCeEEEeCH------HH
Confidence 4678999999999999999999999998775321 11 1 11122 57999999999985 5789999876 45
Q ss_pred HHHHhh
Q 018300 337 ESAINN 342 (358)
Q Consensus 337 ~~~i~~ 342 (358)
.+.+..
T Consensus 267 ~~~~~~ 272 (407)
T PRK07179 267 AEYVPF 272 (407)
T ss_pred HHHHHH
Confidence 555543
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-17 Score=159.85 Aligned_cols=195 Identities=22% Similarity=0.228 Sum_probs=134.2
Q ss_pred cHHHHHHHhhhhhcccCCCCCCCcCCCC-cHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCC
Q 018300 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD 193 (358)
Q Consensus 115 s~~V~~al~~~l~~~~~~G~pg~r~~~G-~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD 193 (358)
+|+|++++...+.+ |.+++.+.+++.| .+. .+.+++++++++|++. .+.+++|+.++..++.++++|||
T Consensus 17 ~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~----~~~l~~~la~~~~~~~-----~iv~~sg~~a~~~~~~~~~~~gd 86 (349)
T cd06454 17 HPEVIEAAKEALDK-YGVGAGGSRLISGTSDL----HEELEEELAEFHGKEA-----ALVFSSGYAANDGVLSTLAGKGD 86 (349)
T ss_pred CHHHHHHHHHHHHH-hCCCCCCcCeecCCchH----HHHHHHHHHHHhCCCC-----EEEeccHHHHHHHHHHHhcCCCC
Confidence 68999999988864 4343333333333 332 2335667899999864 36678999999998888899999
Q ss_pred EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh----cCCeEEEEcCCC--CCCCCC
Q 018300 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL----FRPKLIIAGASA--YPRDFD 267 (358)
Q Consensus 194 ~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~----~~~klIi~~~s~--~~~~~d 267 (358)
+|++.++.|.+... .....|..+ .+++ .+|++++++.+.. .++++|+++..+ .|...|
T Consensus 87 ~Vl~~~~~~~~~~~--------~~~~~g~~~--~~~~------~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~ 150 (349)
T cd06454 87 LIISDSLNHASIID--------GIRLSGAKK--RIFK------HNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP 150 (349)
T ss_pred EEEEehhhhHHHHH--------HHHHcCCce--EEec------CCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccC
Confidence 99998876554321 223445533 3321 3578888888764 356777776543 466889
Q ss_pred HHHHHHHHHHcCCEEEEecccccccccc-CCc--cCCC--CCCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 268 YPRMRQIADAVGALLMMDMAHISGLVAA-SVV--ADPF--KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 268 l~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~~--~~pl--~gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+++|.++|+++|+++++|++|..|.... +.. ..+. .+.|++++|+||+++. +||+++.++ ++.+++..
T Consensus 151 ~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~gG~i~~~~------~~~~~~~~ 223 (349)
T cd06454 151 LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA-VGGYIAGSK------ELIDYLRS 223 (349)
T ss_pred HHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc-cCCEEECCH------HHHHHHHH
Confidence 9999999999999999999998775521 110 1111 2789999999998754 788888776 45555544
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-17 Score=161.86 Aligned_cols=198 Identities=23% Similarity=0.251 Sum_probs=139.0
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD 193 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD 193 (358)
+++.+.+++...+.. +..++++.++..|.. ++.+.+++++++++|.+. +|.+++|++++..++.++++|||
T Consensus 57 ~~~~i~~a~~~~~~~-~~~~~~~~~~~~G~~---~l~~~l~~~la~~~g~~~-----~i~~tsG~~a~~~~~~~l~~~gd 127 (397)
T PRK06939 57 NHPELIAAAKAALDS-HGFGMASVRFICGTQ---DLHKELEEKLAKFLGTED-----AILYSSCFDANGGLFETLLGKED 127 (397)
T ss_pred CCHHHHHHHHHHHHH-cCCCCcccccccCCc---HHHHHHHHHHHHHhCCCc-----EEEEcChHHHHHHHHHHhCCCCC
Confidence 688899988877644 323555545555653 344556677899999763 47788999999999999999999
Q ss_pred EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh---c--CCeEEEEcC--CCCCCCC
Q 018300 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---F--RPKLIIAGA--SAYPRDF 266 (358)
Q Consensus 194 ~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~---~--~~klIi~~~--s~~~~~~ 266 (358)
+|++.++.|.++.. .+...+.. .+.++ .+|++++++.++. . ++++|+++. +..|...
T Consensus 128 ~vi~~~~~~~~~~~--------~~~~~~~~--~~~~~------~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~ 191 (397)
T PRK06939 128 AIISDALNHASIID--------GVRLCKAK--RYRYA------NNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIA 191 (397)
T ss_pred EEEEEhhhhHHHHH--------HHHhcCCc--eEEeC------CCCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcC
Confidence 99999886655321 22344442 23322 2588888887753 2 567777763 3356678
Q ss_pred CHHHHHHHHHHcCCEEEEecccccccccc-CC--cc-CCCC-CCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHHh
Q 018300 267 DYPRMRQIADAVGALLMMDMAHISGLVAA-SV--VA-DPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 267 dl~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~--~~-~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
++++|.++|+++|++|++|++|..|.... +. .+ ..+. +.|++++|+||+++|++||++++++ ++.+.+.
T Consensus 192 ~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~~------~~~~~l~ 265 (397)
T PRK06939 192 PLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGRK------EVIDWLR 265 (397)
T ss_pred CHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccCceEEEeCH------HHHHHHH
Confidence 99999999999999999999997665422 11 11 1122 5789999999999889999999876 4555554
Q ss_pred h
Q 018300 342 N 342 (358)
Q Consensus 342 ~ 342 (358)
.
T Consensus 266 ~ 266 (397)
T PRK06939 266 Q 266 (397)
T ss_pred H
Confidence 4
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=163.40 Aligned_cols=173 Identities=19% Similarity=0.225 Sum_probs=126.2
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
+|.+.|| +++.++++|+. +++++|.+. .+.++||+.|+.+++ .+++|||+|+++...||+.....
T Consensus 45 ~~~Y~R~--~~p~~~~le~~----lA~leg~~~-----~v~~~sG~aAi~~~l-~~l~~GD~VI~~~~~yg~~~~~~--- 109 (364)
T PRK07269 45 GFDYTRT--KNPTRAKLEET----LAAIESADY-----ALATSSGMSAIVLAF-SVFPVGSKVVAVRDLYGGSFRWF--- 109 (364)
T ss_pred CcceeCC--CCccHHHHHHH----HHHHhCCCe-----EEEeCCHHHHHHHHH-HHhCCCCEEEEecCCcCchHHHH---
Confidence 4445554 45666777764 788888876 366789999999888 46799999999987777643210
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~ 290 (358)
......+ .++ + +...|++++++.+++ ++|+|+++.+++| ...|+++|+++|+++|+++++|++++.
T Consensus 110 --~~~~~~~-~~~-----~---~~~~d~~~l~~~i~~-~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~ 177 (364)
T PRK07269 110 --NQQEKEG-RFH-----F---TYANTEEELIAAIEE-DTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYS 177 (364)
T ss_pred --HHHHhcC-cEE-----E---EecCCHHHHHHhcCc-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcc
Confidence 0000011 111 1 123588999998864 7899998877765 468999999999999999999999765
Q ss_pred cccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhh
Q 018300 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 291 Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
++. ..|++ ++|++++|+||++.|+. ||+|+++++ ++.+++..
T Consensus 178 ~~~-----~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~-----~l~~~~~~ 223 (364)
T PRK07269 178 PIY-----QRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDL-----ELYEKLFY 223 (364)
T ss_pred ccc-----CCchhhCCcEEEecCceeccCCCcccceEEEeCcH-----HHHHHHHH
Confidence 532 35677 99999999999998865 799898776 66666654
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=164.61 Aligned_cols=180 Identities=23% Similarity=0.216 Sum_probs=128.6
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
+++..+++|+ ++++++|.+. .+.+.||+.|+..++.++++|||+|+++++.|++...... ......|
T Consensus 58 ~~p~~~~Le~----~lA~l~g~~~-----~v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~----~~~~~~g 124 (405)
T PRK08776 58 GNPTRDLLGE----ALAELEGGAG-----GVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFN----ALAKKGH 124 (405)
T ss_pred CChHHHHHHH----HHHHHhCCCc-----eEEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHH----HHHHhcC
Confidence 4555556654 5788999865 4778899999999999999999999998877765321100 0111223
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
. ++..++ ..|++++++.++. ++|+|++..+++| ...|+++|.++|+++|+++++|++|+.+.. .
T Consensus 125 ~--~v~~v~------~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~-----~ 190 (405)
T PRK08776 125 F--ALITAD------LTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPAL-----Q 190 (405)
T ss_pred c--EEEEEC------CCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence 3 334422 2488999988764 7899988766654 578999999999999999999999976532 3
Q ss_pred CCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhhc-cCCccccccc
Q 018300 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNA-VFPGLQVGFV 353 (358)
Q Consensus 300 ~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~~-~f~g~q~~~~ 353 (358)
.|++ ++|++++|+||+|.|+. ||+++++++ ++.+++... ...|...+|+
T Consensus 191 ~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~-----~l~~~l~~~~~~~g~~~s~~ 244 (405)
T PRK08776 191 KPLEFGADLVLHSTTKYINGHSDVVGGAVVARDA-----ELHQQLVWWANALGLTGSPF 244 (405)
T ss_pred CcccccCCEEEecCceeecCCCCceEEEEEeCCH-----HHHHHHHHHHHhcCCCCCHH
Confidence 5666 89999999999998875 688888765 666666542 2334434443
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-17 Score=160.48 Aligned_cols=166 Identities=11% Similarity=0.047 Sum_probs=125.6
Q ss_pred HHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec
Q 018300 154 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (358)
Q Consensus 154 ~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~ 232 (358)
++++++++|.+. .+.++||+.|+.+++.++ ++|||+|+++++.+.+... .+...|. +++.++++
T Consensus 37 e~~la~~~g~~~-----~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~--------~~~~~G~--~~v~~d~d 101 (375)
T PRK11706 37 QQWLEQRFGSAK-----VLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTAN--------AFVLRGA--KIVFVDIR 101 (375)
T ss_pred HHHHHHHhCCCe-----EEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHH--------HHHHcCC--EEEEEecC
Confidence 345788899875 356778899998887766 7999999999876554321 3345565 56677787
Q ss_pred CCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEc
Q 018300 233 ESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTT 311 (358)
Q Consensus 233 ~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S 311 (358)
+++..+|++++++.++. ++|+|++.. .+|...|+++|.++|+++|+++++|++|+.|....+. ++. ..|+.++|
T Consensus 102 ~~~~~~d~~~le~~i~~-~tk~i~~~~-~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~---~~g~~~~~~~~S 176 (375)
T PRK11706 102 PDTMNIDETLIEAAITP-KTRAIVPVH-YAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGR---ALGTIGHIGCFS 176 (375)
T ss_pred CCcCCcCHHHHHHhcCC-CCeEEEEeC-CCCCccCHHHHHHHHHHcCCEEEEECccccccccCCe---eeecCcCEEEEe
Confidence 76678999999998865 788887653 4677889999999999999999999999988643332 233 46888999
Q ss_pred Cc--CcCccCcEEEEEEeCCCCchhHHHHHHhhcc
Q 018300 312 TH--KSLRGPRGGMIFFKKDPVLGVELESAINNAV 344 (358)
Q Consensus 312 ~h--K~L~Gp~GG~I~~~~~~~~~~~~~~~i~~~~ 344 (358)
+| |.+....||+++++++ ++.+++....
T Consensus 177 f~~~K~l~~g~gG~~~~~~~-----~~~~~~~~~~ 206 (375)
T PRK11706 177 FHETKNYTAGEGGALLINDP-----ALIERAEIIR 206 (375)
T ss_pred CCCCccccccCCeEEEECCH-----HHHHHHHHHH
Confidence 88 9997667788888776 6766665544
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=162.52 Aligned_cols=169 Identities=24% Similarity=0.262 Sum_probs=125.8
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
+++..+++|+ ++++++|.+. .+.++||+.|+..++.++++|||+|++.++.|++..... . ......|
T Consensus 38 ~~p~~~~le~----~la~l~g~~~-----a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~--~--~~~~~~g 104 (369)
T cd00614 38 GNPTVDALEK----KLAALEGGEA-----ALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLF--E--RLLPKLG 104 (369)
T ss_pred CChhHHHHHH----HHHHHHCCCC-----EEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHH--H--HHHhhcC
Confidence 5666677776 4788999875 366789999999999999999999999987776642110 0 0112334
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
. ++..++.+ |++++++.+++ ++|+|+++.+++ +...|+++|.++|+++|+++++|++|+.+.. .
T Consensus 105 ~--~~~~v~~~------d~~~l~~~i~~-~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~-----~ 170 (369)
T cd00614 105 I--EVTFVDPD------DPEALEAAIKP-ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL-----Q 170 (369)
T ss_pred e--EEEEeCCC------CHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc-----C
Confidence 4 44443332 58999998864 789999876654 4578999999999999999999999987643 2
Q ss_pred CCCC-CCcEEEEcCcCcCccC---cEEEEEEeCCCCchhHHHHHHhh
Q 018300 300 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 300 ~pl~-gaDiv~~S~hK~L~Gp---~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
.+++ ++|++++|++|+++|+ .||+++++++ ++.+++..
T Consensus 171 ~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~-----~l~~~l~~ 212 (369)
T cd00614 171 RPLELGADIVVHSATKYIGGHSDVIAGVVVGSGE-----ALIQRLRF 212 (369)
T ss_pred ChhhhCCcEEEeccceeccCCCCceEEEEEeCcH-----HHHHHHHH
Confidence 4566 8999999999999875 4899999874 45555543
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=163.94 Aligned_cols=169 Identities=20% Similarity=0.210 Sum_probs=125.5
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
+++..+++|+ ++++++|.+. .+.++||+.|+.+++. ++++||+|+++++.|++.+.... ..+...|
T Consensus 52 ~~p~~~~le~----~lA~l~g~~~-----~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~----~~~~~~G 117 (390)
T PRK08064 52 GNPTREALED----IIAELEGGTK-----GFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMIT----EVLSRFG 117 (390)
T ss_pred CChhHHHHHH----HHHHHhCCCC-----eEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHH----HHHHHcC
Confidence 4555566665 5889999885 3667999999988886 78999999999988876543110 1123345
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
.. +..+++ .|++++++.+++ ++|+|++..+++ +...|+++|.++|+++|+++++|++++.+.. .
T Consensus 118 ~~--v~~v~~------~d~~~l~~~l~~-~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~-----~ 183 (390)
T PRK08064 118 IE--HTFVDM------TNLEEVAQNIKP-NTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLL-----Q 183 (390)
T ss_pred CE--EEEECC------CCHHHHHHhcCC-CceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccc-----c
Confidence 53 333332 278999988764 789998877665 5688999999999999999999999876532 2
Q ss_pred CCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhhc
Q 018300 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 300 ~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
.+++ ++|++++|+||++.|+. +|+++++++ ++.++++..
T Consensus 184 ~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~-----~~~~~l~~~ 226 (390)
T PRK08064 184 KPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDE-----ELAQKLYFL 226 (390)
T ss_pred CchhhCCcEEEeecceeccCCccceeEEEEeCCH-----HHHHHHHHH
Confidence 3556 89999999999999886 488887765 666666654
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-17 Score=163.62 Aligned_cols=177 Identities=20% Similarity=0.102 Sum_probs=130.0
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
++.+.|| +++.++++|+ ++++++|.+. .+.+.||+.|+.+++.++++|||+|+++++.|+++.....
T Consensus 56 ~~~Y~r~--~~pt~~~Le~----~lA~l~g~~~-----~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~-- 122 (394)
T PRK07050 56 QWRYGLH--ATPTSLALAQ----RLAEIEGGRH-----ALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGE-- 122 (394)
T ss_pred CcccCCC--CCHHHHHHHH----HHHHHhCCCe-----EEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHH--
Confidence 3445555 6676666665 4788999865 3566889999999999999999999999988776432110
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~ 290 (358)
......|. ++..++.. |.+++++.++. ++|+|+++.++++ ...|+++|.++|+++|+++++|++|+.
T Consensus 123 --~~~~~~Gi--~v~~vd~~------~~~~l~~~i~~-~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 123 --WLARDFGI--TVRFYDPL------IGAGIADLIQP-NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred --HHHHhcCe--EEEEECCC------CHHHHHHhcCC-CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 01223454 44443321 45778888764 7899998776665 578999999999999999999999987
Q ss_pred cccccCCccCCCC-CCcEEEEcCcCcCccC---cEEEEEEeCCCCchhHHHHHHhhc
Q 018300 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 291 Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp---~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
|.. ..|++ |+|++++|++|++.|. .||+++++++ ++.+++...
T Consensus 192 ~~~-----~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~-----~~~~~~~~~ 238 (394)
T PRK07050 192 GLA-----FKPFEHGVDISVQALTKYQSGGSDVLMGATITADA-----ELHAKLKLA 238 (394)
T ss_pred ccc-----cCHHHcCCeEEEEECCceecCCCCeeEEEEEECCH-----HHHHHHHHH
Confidence 754 24566 8999999999999765 3788888775 676766543
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-17 Score=162.40 Aligned_cols=191 Identities=24% Similarity=0.231 Sum_probs=141.0
Q ss_pred CCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccc
Q 018300 132 EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFM 211 (358)
Q Consensus 132 ~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~ 211 (358)
.+|.+.|+ |++.++.+|+. ++++-|.+.. +.+.||+.|+..++.+++++||+|+.++..||+.+...
T Consensus 53 ~~~~Y~R~--~nPT~~~lE~~----~a~LEg~~~~-----~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~-- 119 (396)
T COG0626 53 GGYDYSRT--GNPTRDALEEA----LAELEGGEDA-----FAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLF-- 119 (396)
T ss_pred cCcccccC--CCccHHHHHHH----HHHhhCCCcE-----EEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHH--
Confidence 34555554 67888888874 6788888873 67899999999999999999999999987788754321
Q ss_pred cchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCCHHHHHHHHHHcCCEEEEecccc
Q 018300 212 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHI 289 (358)
Q Consensus 212 ~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~dl~~I~~ia~e~g~~livD~Ah~ 289 (358)
. +.....| +++.++ + .-|.+++++.+...++|+|+++.+.+|. ..|+++|+++||++|+++++|++-+
T Consensus 120 ~--~~l~~~g--i~~~~~--d----~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfa 189 (396)
T COG0626 120 E--KILQKFG--VEVTFV--D----PGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFA 189 (396)
T ss_pred H--HHHHhcC--eEEEEE--C----CCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcc
Confidence 0 1122334 344443 2 2244566666654479999999888874 7999999999999999999999844
Q ss_pred ccccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhh--ccCCccccccccc
Q 018300 290 SGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN--AVFPGLQVGFVSY 355 (358)
Q Consensus 290 ~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~--~~f~g~q~~~~~~ 355 (358)
.+.+..|++ ||||++.|+.|++.|.. +|+++++++ ++.+++.. ....|...+|+..
T Consensus 190 -----tP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~-----~~~~~~~~~~~~~~G~~l~p~dA 251 (396)
T COG0626 190 -----TPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNE-----ELYELLFFAQRANTGAVLSPFDA 251 (396)
T ss_pred -----cccccChhhcCCCEEEEeccccccCCcceeeeEEecChH-----HHHHHHHHHHHhhcCCCCCHHHH
Confidence 444567888 99999999999999975 588887776 77777633 2235777777654
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-17 Score=163.36 Aligned_cols=167 Identities=20% Similarity=0.211 Sum_probs=123.1
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
+++.++++|+ ++++++|+++ .+.++||+.|+..++.++++|||+|++..+.|++.+... ...+...|
T Consensus 63 ~~p~~~~le~----~lA~l~g~~~-----~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~----~~~~~~~G 129 (403)
T PRK07503 63 SNPTLALLEQ----RMASLEGGEA-----AVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFL----HHGLGEFG 129 (403)
T ss_pred CCchHHHHHH----HHHHHhCCCc-----EEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHH----HHHHhhCC
Confidence 3445556665 4888999876 367789999999999999999999999887776543210 01122345
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
. ++..+++ .|++++++.++. ++|+|++..+++ +...|+++|.++|+++|+++++|++|+.+.. .
T Consensus 130 ~--~v~~vd~------~d~~~l~~~i~~-~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~-----~ 195 (403)
T PRK07503 130 V--TVRHVDL------TDPAALKAAISD-KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYL-----Q 195 (403)
T ss_pred E--EEEEeCC------CCHHHHHHhcCc-cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence 4 4444333 278999998865 789998865554 4678999999999999999999999986532 2
Q ss_pred CCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHh
Q 018300 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 300 ~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~ 341 (358)
.++. ++|++++|++|+++|+. ||+++.++ ++.+++.
T Consensus 196 ~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~------~l~~~l~ 235 (403)
T PRK07503 196 RPLELGADLVVHSATKYLGGHGDITAGLVVGGK------ALADRIR 235 (403)
T ss_pred CchhhCCCEEEccccccccCCCceeEEEEEcCH------HHHHHHH
Confidence 4555 89999999999998753 78888554 5666664
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-17 Score=161.45 Aligned_cols=168 Identities=22% Similarity=0.293 Sum_probs=122.2
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
++.+.|| +++.++++|+ ++++++|++. .+.+.||+.|+..++.+++++||+|++.+..|++.....
T Consensus 45 ~~~y~r~--~~p~~~~le~----~la~l~g~~~-----~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~--- 110 (380)
T TIGR01325 45 GFVYSRY--ANPTVAAFEE----RIAALEGAER-----AVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFI--- 110 (380)
T ss_pred CcceecC--CCchHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHH---
Confidence 3444454 3455556665 4788999865 366789999999999999999999999887676542210
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~ 290 (358)
...+...|. ++..++. .|++++++.++. ++|+|++..+++ +...|+++|.++|+++|+++++|++|+.
T Consensus 111 -~~~~~~~g~--~v~~v~~------~d~~~l~~~i~~-~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~ 180 (380)
T TIGR01325 111 -SEILPRFGI--EVSFVDP------TDLNAWEAAVKP-NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFAT 180 (380)
T ss_pred -HHHHHHhCC--EEEEECC------CCHHHHHHhcCC-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcc
Confidence 011233454 3334332 278999888764 789999876665 4678999999999999999999999875
Q ss_pred cccccCCccCCCC-CCcEEEEcCcCcCccC---cEEEEEEeCC
Q 018300 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKD 329 (358)
Q Consensus 291 Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp---~GG~I~~~~~ 329 (358)
+.. ..|++ ++|++++|+||+++|+ .||+++++++
T Consensus 181 ~~~-----~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~ 218 (380)
T TIGR01325 181 PVL-----QQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEE 218 (380)
T ss_pred ccc-----CCchhhCCCEEEeeccceecCCCCeEEEEEEeCHH
Confidence 532 24566 8999999999999876 2688888764
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=163.58 Aligned_cols=186 Identities=21% Similarity=0.208 Sum_probs=131.1
Q ss_pred CCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccc
Q 018300 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (358)
Q Consensus 134 ~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (358)
|.+.|| +++..+.+|+ ++++++|.+. .+.+.||+.|+..++.++++|||+|+++++.|++......
T Consensus 44 ~~Y~R~--~~pt~~~L~~----~lA~l~g~~~-----~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~--- 109 (386)
T PRK08045 44 HDYSRR--GNPTRDVVQR----ALAELEGGAG-----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFD--- 109 (386)
T ss_pred ceeeCC--CCccHHHHHH----HHHHHhCCCe-----EEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHH---
Confidence 344444 4455556655 5788988643 4667889999999999999999999999988776432100
Q ss_pred hhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEecccccc
Q 018300 214 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISG 291 (358)
Q Consensus 214 ~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~G 291 (358)
......+. ++..+ + ..|++++++.+++ ++|+|++..+++| ...|+++|.++|+++|+++++|+++..+
T Consensus 110 -~~~~~~gi--~v~~v--d----~~d~e~l~~~l~~-~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~ 179 (386)
T PRK08045 110 -SLAKRGCY--RVLFV--D----QGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSP 179 (386)
T ss_pred -HHHhhCCe--EEEEe--C----CCCHHHHHHhccc-CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 00111222 33332 2 3588999998764 7899998877765 5789999999999999999999998765
Q ss_pred ccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhhc-cCCccccccc
Q 018300 292 LVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNA-VFPGLQVGFV 353 (358)
Q Consensus 292 l~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~~-~f~g~q~~~~ 353 (358)
.. +.|++ ++|++++|+||++.|+. +|+++++++ ++.+++... ...+...+|+
T Consensus 180 ~~-----~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~-----~~~~~l~~~~~~~g~~~~p~ 236 (386)
T PRK08045 180 AL-----QNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDP-----DVVTELAWWANNIGVTGGAF 236 (386)
T ss_pred cc-----CCchhhCCCEEEeecceeccCCCCceeEEEEeCcH-----HHHHHHHHHHHhcCCCCCHH
Confidence 32 35667 89999999999999887 588887655 565655432 2334444444
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=157.05 Aligned_cols=197 Identities=14% Similarity=0.078 Sum_probs=139.5
Q ss_pred ccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHH
Q 018300 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (358)
Q Consensus 105 i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a 184 (358)
..++|++..+++.|+++|..... . .+.++.+.+++ +++.+++++|+++... +.+++.|||.|+..+
T Consensus 7 ~~~~pgP~~~~~~~~~a~~~~~~-~-----------~~~~~~~~~~~-~~~~l~~l~~~~~~~~-~i~~~~~gt~~l~~~ 72 (368)
T PRK13479 7 LLLTPGPLTTSRTVREAMLRDWG-S-----------WDDDFNALTAS-VRAKLVAIATGEEGYT-CVPLQGSGTFSVEAA 72 (368)
T ss_pred eeecCCCCCCCHHHHHHhCCCCC-C-----------CChHHHHHHHH-HHHHHHHHhCCCCCce-EEEEcCCcHHHHHHH
Confidence 35789999999999999875431 1 12334455554 7888999999965211 234566889999999
Q ss_pred HHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc-CCeEEEEcCCC--
Q 018300 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGASA-- 261 (358)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~-~~klIi~~~s~-- 261 (358)
+.++..+||+|++.+. +++...+ ...+...|..+..++ .+ +++.+|++++++.++.. ++++|++.+++
T Consensus 73 ~~~l~~~~~~vlv~~~---~~~~~~~---~~~~~~~g~~~~~i~--~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~ 143 (368)
T PRK13479 73 IGSLVPRDGKVLVPDN---GAYGARI---AQIAEYLGIAHVVLD--TG-EDEPPDAAEVEAALAADPRITHVALVHCETT 143 (368)
T ss_pred HHhccCCCCeEEEEeC---CchHHHH---HHHHHHcCCcEEEEE--CC-CCCCCCHHHHHHHHHhCCCCcEEEEEcccCc
Confidence 9999999999988764 2221110 012234565444444 44 24579999999987642 35666655443
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 262 ~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
.|...|+++|.++|+++|+++++|++|..|.. +.++. ++|++++|+||++.||.| |+++.+++
T Consensus 144 tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~-----~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~ 209 (368)
T PRK13479 144 TGILNPLDEIAAVAKRHGKRLIVDAMSSFGAI-----PIDIAELGIDALISSANKCIEGVPGFGFVIARRS 209 (368)
T ss_pred cccccCHHHHHHHHHHcCCEEEEEcccccCCc-----cccccccCceEEEecCccccccCCCceEEEECHH
Confidence 56789999999999999999999999876642 22333 789999999999999888 99998873
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-17 Score=162.17 Aligned_cols=167 Identities=20% Similarity=0.186 Sum_probs=122.4
Q ss_pred CCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccc
Q 018300 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (358)
Q Consensus 134 ~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (358)
|.+.|| +++.++++|+ .+++++|.+. .+.+.||+.|+..++.++++|||+|+++++.|++......
T Consensus 53 ~~y~r~--~~pt~~~Le~----~lA~l~G~~~-----al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~--- 118 (386)
T PRK06767 53 YIYSRL--GNPTVKLFEE----RMAVLEGGEE-----ALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLE--- 118 (386)
T ss_pred ccccCC--CCcchHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHH---
Confidence 334443 4455666665 4788999865 4778899999999999999999999999887766533100
Q ss_pred hhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEecccccc
Q 018300 214 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISG 291 (358)
Q Consensus 214 ~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~G 291 (358)
......+. +...+ ...|++++++.+.. ++|+|++..+++| ...|+++|.++|+++|+++++|++|+.+
T Consensus 119 -~~~~~~gi--~~~~~------~~~d~~~l~~~i~~-~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~ 188 (386)
T PRK06767 119 -VLEEKFMI--THSFC------DMETEADIENKIRP-NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSP 188 (386)
T ss_pred -HHHhhcCe--EEEEe------CCCCHHHHHHhhCc-CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 00111222 22221 13488999988764 7899998776654 5789999999999999999999998755
Q ss_pred ccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCC
Q 018300 292 LVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (358)
Q Consensus 292 l~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~ 329 (358)
.. ..|+. ++|++++|++|+++|+. ||+++++++
T Consensus 189 ~~-----~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~ 225 (386)
T PRK06767 189 YL-----QRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTR 225 (386)
T ss_pred cc-----CCchhcCCcEEEecCcceecCCCCceeEEEEeChH
Confidence 43 24556 89999999999998875 799999875
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=162.82 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=121.2
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
+|.+.|+ |++.++.+|+. ++++.|.++ .+.++||+.|+..++.++++|||+|+++++.|+++....
T Consensus 38 ~~~Y~r~--g~p~~~~lE~~----la~leg~~~-----~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~--- 103 (397)
T PRK05939 38 GFTYARQ--GTPTTAALEAK----ITKMEGGVG-----TVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLF--- 103 (397)
T ss_pred CCCcCCC--CCHHHHHHHHH----HHHHhCCCe-----EEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHH---
Confidence 3444443 77888888774 788999887 377889999999999999999999999998887764321
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~ 290 (358)
..+...|. ++..++. .|++++++.++. ++|+|+++.+++ +...|+++|+++|+++|+++++|++|+.
T Consensus 104 --~~l~~~G~--~v~~v~~------~d~e~l~~~l~~-~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~ 172 (397)
T PRK05939 104 --GTLRGLGV--EVTMVDA------TDVQNVAAAIRP-NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTS 172 (397)
T ss_pred --HHHHhcCC--EEEEECC------CCHHHHHHhCCC-CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccc
Confidence 12334455 3444332 388999998864 789998876655 4578999999999999999999999986
Q ss_pred cccccCCccCCCC-CCcEEEEcCcCcCccCc
Q 018300 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR 320 (358)
Q Consensus 291 Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~ 320 (358)
+.. ..+.+ |+|++++|+||++.|+.
T Consensus 173 ~~~-----~~~~~~gaDivv~S~sK~~~g~g 198 (397)
T PRK05939 173 PWL-----FRPKDVGASLVINSLSKYIAGHG 198 (397)
T ss_pred ccc-----cCccccCCEEEEecCeecccCCC
Confidence 643 24555 89999999999998753
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.9e-17 Score=156.61 Aligned_cols=253 Identities=16% Similarity=0.091 Sum_probs=169.4
Q ss_pred cccccccChHHHHHHHHHHHHhhhccccc--ccCCCCcHHHHHHHhhhhhccc-CCCCCCCcCCCCcHHHHHHHHHHHHH
Q 018300 80 DYSLGEADPEVCEIITKEKERQFKSLELI--ASENFTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKR 156 (358)
Q Consensus 80 ~~~l~~~d~~~~~~i~~e~~~~~~~i~li--as~n~~s~~V~~al~~~l~~~~-~~G~pg~r~~~G~~~~~~lE~~~~~~ 156 (358)
.+++....|++|..+.+...+....-.|- -++..+|+.|.+++........ .+++++ || .+ ++.+..++.
T Consensus 9 ~~~l~~~~~~vw~e~~~la~e~~~~~~LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~---~G-~p---~L~~aL~k~ 81 (420)
T KOG0257|consen 9 NRNLSTSKPYVWTEINRLAAEHKVPNPLGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRG---YG-LP---QLRKALAKA 81 (420)
T ss_pred cccccccCCcHHHHHHHHHHhcCCCCcccCCCCCCCCcHHHHHHHHHHhccchhcccccc---CC-ch---HHHHHHHHH
Confidence 56778888899998887655543211132 3355678889999877665442 122222 33 33 455566677
Q ss_pred HHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEece-----
Q 018300 157 ALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR----- 230 (358)
Q Consensus 157 la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~----- 230 (358)
+++++|.... ...+|++++|. +|+..++.+++++||+|++.+|-+.++.. .+.+.|.....++..
T Consensus 82 ~se~~~~~~~-~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~--------~~~maG~tpv~v~~~~~~g~ 152 (420)
T KOG0257|consen 82 YSEFYGGLLD-PDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIP--------QVVMAGGTPVFVPLKPKEGN 152 (420)
T ss_pred HHHHhccccC-CcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhh--------HHhhcCCcceeecccccccc
Confidence 8888886531 11357777776 59999999999999999999987666532 345666543344322
Q ss_pred ecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC-----CCCHHHHHHHHHHcCCEEEEeccccccccccCC-ccC--CC
Q 018300 231 LDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASV-VAD--PF 302 (358)
Q Consensus 231 ~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~-----~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~~--pl 302 (358)
+...+..+|.++++..+.+ |+|+|+++.++||+ ...+++|+++|++||.++++|+++. -+++.+. +++ .+
T Consensus 153 ~~s~~~~~D~~~le~~~t~-kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe-~~v~d~~~h~r~asl 230 (420)
T KOG0257|consen 153 VSSSDWTLDPEELESKITE-KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYE-WLVYDGNKHIRIASL 230 (420)
T ss_pred ccCccccCChHHHHhhccC-CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhH-HHhhCCCcceeeecC
Confidence 0134568999999999875 89999998888764 3458999999999999999999865 3444442 221 11
Q ss_pred CC---CcEEEEcCcCcC--ccCcEEEEEEeCCCC-chhHHHHHHhhccCCcccc
Q 018300 303 KY---CDVVTTTTHKSL--RGPRGGMIFFKKDPV-LGVELESAINNAVFPGLQV 350 (358)
Q Consensus 303 ~g---aDiv~~S~hK~L--~Gp~GG~I~~~~~~~-~~~~~~~~i~~~~f~g~q~ 350 (358)
.| --+.++|+.|++ .|+|-|++++.+.++ ....+++++.+.....+|+
T Consensus 231 Pgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~ 284 (420)
T KOG0257|consen 231 PGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLYSALFPVHQNFVFTCPTPIQE 284 (420)
T ss_pred CchhheEEEeccccceeeeeeeeeeeeechHHhhhhHHHHhhccccccCcHHHH
Confidence 22 347789999996 789999999955433 4444555555555555544
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.8e-17 Score=161.19 Aligned_cols=161 Identities=19% Similarity=0.189 Sum_probs=121.0
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
+++...++|+ ++++++|.+. .+.++||+.|+.+++.++++|||+|+++++.|++++.... ..+...|
T Consensus 62 ~~p~~~~Le~----~iA~~~g~~~-----~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~----~~~~~~G 128 (400)
T PRK06234 62 GNPTSTEVEN----KLALLEGGEA-----AVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLN----HGLTRYG 128 (400)
T ss_pred CCccHHHHHH----HHHHHhCCCc-----EEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHH----HHHhhCC
Confidence 3444556665 4788999764 3678899999999999999999999999887766433110 1123445
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHc--CCEEEEeccccccccccCC
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAV--GALLMMDMAHISGLVAASV 297 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~--g~~livD~Ah~~Gl~~~g~ 297 (358)
. ++..++. .|++++++.+++ ++|+|+++.+++ +...|+++|.++|+++ |+++++|++|+.+..
T Consensus 129 ~--~v~~vd~------~d~e~l~~~i~~-~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~---- 195 (400)
T PRK06234 129 V--EVTFVDT------SNLEEVRNALKA-NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYI---- 195 (400)
T ss_pred e--EEEEECC------CCHHHHHHHhcc-CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhc----
Confidence 4 4444332 278999998864 789999877665 4578999999999997 999999999886643
Q ss_pred ccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCC
Q 018300 298 VADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (358)
Q Consensus 298 ~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~ 329 (358)
..+++ ++|++++|++|++.|+. ||+++++++
T Consensus 196 -~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~ 230 (400)
T PRK06234 196 -QRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEE 230 (400)
T ss_pred -CCchhhCCcEEEeeccccccCCCCceeEEEEecHH
Confidence 24556 89999999999998764 699998873
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=156.69 Aligned_cols=193 Identities=15% Similarity=0.159 Sum_probs=132.7
Q ss_pred CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcH---HHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh
Q 018300 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNE---YIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~---~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al 188 (358)
..+...+.+++.. |..|+.++|.-.|.. +...+++ .++.+++++|++.. +++++|+.++..++.++
T Consensus 18 g~~~~~~~~a~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~-~~e~lA~~~g~~~~-----~i~~g~~~a~~~~~~~l 86 (370)
T TIGR02539 18 GVLTEAARKALVE-----FGDGYSVCDFCGGRLDQITKPPIHD-FLEDLAEFLGMDEA-----RVTHGAREGKFAVMHAL 86 (370)
T ss_pred CCCcHHHHHHHHH-----HhhccccccccccccccccchHHHH-HHHHHHHHhCCCce-----EEECChHHHHHHHHHHh
Confidence 3456667777654 334566555544432 0112333 34558999999862 34678888999999999
Q ss_pred ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC-CCCCCCHHHHHHHhhh------cCCeEEEEcCCC
Q 018300 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAIL------FRPKLIIAGASA 261 (358)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~iD~d~le~~i~~------~~~klIi~~~s~ 261 (358)
++|||+|++..+.|.+.+ ..+...|..+.. ++.++ .++.+|++++++.++. .++++|++..++
T Consensus 87 ~~~gd~Vl~~~~~h~s~~--------~~~~~~g~~~~~--~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~ 156 (370)
T TIGR02539 87 CKEGDWVVLDGLAHYTSY--------VAAERAGLNVKE--VPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVD 156 (370)
T ss_pred hCCCCEEEECCcccHHHH--------HHHHHcCCEEEE--EecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCC
Confidence 999999999776543321 123456664444 44442 2467999999998853 257888876544
Q ss_pred --CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCcCcc-CcEEEEEEeCC
Q 018300 262 --YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKD 329 (358)
Q Consensus 262 --~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~G-p~GG~I~~~~~ 329 (358)
+|...|+++|.++|+++|+++++|++|+.|... ....+ ++|+++.|+||++++ .+.|+++++++
T Consensus 157 ~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~----~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~ 224 (370)
T TIGR02539 157 GEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMP----VSAKEIGADFIVGSGHKSMAASGPCGVLGMSEE 224 (370)
T ss_pred CCCccccCHHHHHHHHHHcCCeEEEECccccCCcC----CCHHHcCCCEEEeeCcccccCCCCEEEEEECHH
Confidence 567889999999999999999999999976321 11122 689999999999853 33589988774
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.4e-17 Score=161.28 Aligned_cols=160 Identities=20% Similarity=0.247 Sum_probs=119.7
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
+++.++++|+ ++++++|.+. .+.++||+.|+..++.++++|||+|++.++.|++...... ..+...|
T Consensus 62 ~~p~~~~le~----~lA~l~g~~~-----~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~----~~~~~~G 128 (398)
T PRK08249 62 TNPTVQAFEE----KVRILEGAEA-----ATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFT----EFLPRMG 128 (398)
T ss_pred CChHHHHHHH----HHHHHhCCCe-----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHH----HHHhhCC
Confidence 4566666665 4788999876 3778999999999999999999999999887766422100 0122334
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
. ++..++ ..|++++++.+++ ++|+|+++.+++| ...|+++|.++|+++|+++++|++|+.+.. .
T Consensus 129 i--~v~~vd------~~d~e~l~~~i~~-~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~-----~ 194 (398)
T PRK08249 129 V--DVTLCE------TGDHEQIEAEIAK-GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPIN-----Q 194 (398)
T ss_pred e--EEEEcC------CCCHHHHHHhcCC-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCcccc-----C
Confidence 4 333322 3689999998865 7899998766654 578999999999999999999999885532 2
Q ss_pred CCCC-CCcEEEEcCcCcCccCc---EEEEEEeC
Q 018300 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK 328 (358)
Q Consensus 300 ~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~ 328 (358)
.++. ++|++++|++|+++|+. ||++++++
T Consensus 195 ~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~ 227 (398)
T PRK08249 195 NPLALGADLVIHSATKFLSGHADALGGVVCGSK 227 (398)
T ss_pred CchhhCCCEEeccCceecCCCCCceEEEEECCH
Confidence 3455 89999999999998763 68887755
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-17 Score=162.98 Aligned_cols=173 Identities=17% Similarity=0.138 Sum_probs=124.5
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
+|.+.|+ |++.++++|+. ++++.|.++ .+.+.||+.|+.+++.++++|||+|+++...|++.+...
T Consensus 55 ~~~Y~r~--~~P~~~~lE~~----la~leg~~~-----av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~--- 120 (384)
T PRK06434 55 PYIYTRW--GNPTVQAFEEK----YAVLENAEH-----ALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFF--- 120 (384)
T ss_pred CcceeCC--CChhHHHHHHH----HHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHH---
Confidence 3444444 67888888875 788999987 377899999999999999999999999877666654311
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~ 290 (358)
...+...|. ++..+++++. ..++ +...++|+|+++.+.++ ...|+++|.++|+++| +++|++|+.
T Consensus 121 -~~~~~~~Gi--~v~fvd~~~~-~~~~-------l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s 187 (384)
T PRK06434 121 -NKVLKTLGI--HVDYIDTDRL-NSLD-------FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFAS 187 (384)
T ss_pred -HHHHHhcCc--EEEEECCCCh-hhee-------ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCC
Confidence 012233454 4555555421 1121 22236889998876654 5789999999999998 567999864
Q ss_pred cccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhh
Q 018300 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 291 Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+. ...|++ ++|++++|+||++.|+. ||+|+++++ ++.+++..
T Consensus 188 ~~-----~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~-----~~~~~~~~ 233 (384)
T PRK06434 188 PY-----NQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNK-----SIFNNLVE 233 (384)
T ss_pred cc-----cCCchhcCCCEEEeecccccCCCCCceEEEEecCcH-----HHHHHHHH
Confidence 43 235677 99999999999999865 788988776 66666654
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.1e-17 Score=160.93 Aligned_cols=173 Identities=18% Similarity=0.110 Sum_probs=124.7
Q ss_pred CCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccc
Q 018300 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (358)
Q Consensus 134 ~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (358)
+.+.|+ +++.++++|+ ++++++|.+.. +.++||+.|+..++.++++|||+|+++.+.|++.+....
T Consensus 55 ~~Y~r~--~~p~~~~le~----~lA~l~g~~~a-----v~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~--- 120 (389)
T PRK05968 55 PIYSRG--DNPTVRAFEE----MLAKLEGAEDA-----RGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFE--- 120 (389)
T ss_pred ccccCC--CChhHHHHHH----HHHHHhCCCcE-----EEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH---
Confidence 444443 4455666665 47889999863 667899999999999999999999999887776432100
Q ss_pred hhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEecccccc
Q 018300 214 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISG 291 (358)
Q Consensus 214 ~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~G 291 (358)
..+...|. ++..++. .|++++++.+ .++|+|++..+.++ ...|+++|.++|+++|+++++|++|+.+
T Consensus 121 -~~~~~~G~--~v~~vd~------~d~~~l~~~i--~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~ 189 (389)
T PRK05968 121 -TILKRMGV--EVDYVDG------RDEEAVAKAL--PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASP 189 (389)
T ss_pred -HHHHHcCc--eEEEeCC------CCHHHHHHhc--ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcch
Confidence 12233454 3444322 2889999887 26899988755543 4679999999999999999999999766
Q ss_pred ccccCCccCCCC-CCcEEEEcCcCcCccC---cEEEEEEeCCCCchhHHHHHHhh
Q 018300 292 LVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 292 l~~~g~~~~pl~-gaDiv~~S~hK~L~Gp---~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
.. ..|+. |+|++++|++|++.|| .||+++.++ ++.+++..
T Consensus 190 ~~-----~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~------~~~~~l~~ 233 (389)
T PRK05968 190 VF-----QRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSK------EHIARINA 233 (389)
T ss_pred hc-----cCchhcCCcEEEeeccccccCCCCeEEEEEEECH------HHHHHHHH
Confidence 43 23455 8999999999999886 468888666 45555554
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-16 Score=158.71 Aligned_cols=170 Identities=18% Similarity=0.242 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh---------ccCCCEEEecCCCCCcccccccccchhc
Q 018300 146 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---------LKPHDRIMGLDLPHGGHLSHGFMTPKRR 216 (358)
Q Consensus 146 ~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al---------l~pGD~Vl~~~~~~ggh~s~~~~~~~~~ 216 (358)
+.++|+ .+++++|.+. .+.++|||.|+..++.++ ++|||+|+++++.|.++.. .
T Consensus 65 ~~~fe~----~lA~~~g~~~-----~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~--------~ 127 (438)
T PRK15407 65 NDAFEK----KLAEFLGVRY-----ALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVN--------P 127 (438)
T ss_pred HHHHHH----HHHHHhCCCe-----EEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHH--------H
Confidence 455655 4788999875 366788999999998875 5899999999876654321 2
Q ss_pred cccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccC
Q 018300 217 VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAAS 296 (358)
Q Consensus 217 ~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g 296 (358)
+...|. +++.+++++++..+|++++++.+.. ++|+|++.+ .+|...|+++|.++|+++|++|++|++|+.|....|
T Consensus 128 v~~~G~--~pv~vdvd~~~~~id~~~le~~i~~-~tkaVi~~~-~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g 203 (438)
T PRK15407 128 IIQNGL--VPVFVDVELPTYNIDASLLEAAVSP-KTKAIMIAH-TLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDG 203 (438)
T ss_pred HHHcCC--EEEEEecCCCcCCcCHHHHHHHcCc-CCeEEEEeC-CCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCC
Confidence 334554 5666677766788999999998864 788887754 356678999999999999999999999999987655
Q ss_pred CccCCCC-CCcEEEEcCc--CcCccCcEEEEEEeCCCCchhHHHHHHhhcc
Q 018300 297 VVADPFK-YCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNAV 344 (358)
Q Consensus 297 ~~~~pl~-gaDiv~~S~h--K~L~Gp~GG~I~~~~~~~~~~~~~~~i~~~~ 344 (358)
.. +. ..|+.++|+| |.+.+..||+|+++++ ++.+++....
T Consensus 204 ~~---~G~~gd~~~fSf~~~k~~~~geGG~l~t~d~-----~l~~~~~~~~ 246 (438)
T PRK15407 204 RM---TGTFGDIATLSFYPAHHITMGEGGAVFTNDP-----LLKKIIESFR 246 (438)
T ss_pred ee---eeccCceEEEeCCCCCCccccCceEEEECCH-----HHHHHHHHHH
Confidence 32 22 3588888887 6676666999999998 7777665543
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=136.41 Aligned_cols=163 Identities=25% Similarity=0.276 Sum_probs=113.5
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~ 232 (358)
++++++++|+.+.. + + ++..+||.|+..++.++.++|++|++.++.|.++.. . .....|. ++..++.+
T Consensus 5 ~~~~l~~~~~~~~~-~-~-~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~--~-----~~~~~g~--~~~~v~~~ 72 (170)
T cd01494 5 LEEKLARLLQPGND-K-A-VFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYW--V-----AAELAGA--KPVPVPVD 72 (170)
T ss_pred HHHHHHHHcCCCCC-c-E-EEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehh--h-----HHHhcCC--EEEEeccC
Confidence 45678999964432 1 3 445588999999999999999999999887766541 1 2234455 34444444
Q ss_pred CCCC-CCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEE
Q 018300 233 ESTG-LVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVT 309 (358)
Q Consensus 233 ~~~~-~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~ 309 (358)
..+. ..|.+.+++.....+++++++..+++ +...|+++|.++|+++|+++++|++|..+....+.......++|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~ 152 (170)
T cd01494 73 DAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVT 152 (170)
T ss_pred CCCccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEE
Confidence 3222 23333565544445788888876654 34678899999999999999999999876654321111122899999
Q ss_pred EcCcCcCccCcEEEEEEe
Q 018300 310 TTTHKSLRGPRGGMIFFK 327 (358)
Q Consensus 310 ~S~hK~L~Gp~GG~I~~~ 327 (358)
.|+||+|++|++|+|++|
T Consensus 153 ~s~~K~~~~~~~G~l~~~ 170 (170)
T cd01494 153 FSLHKNLGGEGGGVVIVK 170 (170)
T ss_pred EEcccccCCCceEEEEeC
Confidence 999999999888999875
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=157.69 Aligned_cols=174 Identities=20% Similarity=0.193 Sum_probs=125.6
Q ss_pred CCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccc
Q 018300 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (358)
Q Consensus 134 ~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (358)
|.+.|+ +++..+++|+ ++++++|.+. .+.+.||+.|+..++ ++++|||+|+++++.|++.+....
T Consensus 42 ~~y~r~--~~p~~~~Le~----~lA~l~g~~~-----~~~~~sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~--- 106 (377)
T PRK07671 42 YEYSRT--GNPTRAALEE----LIAVLEGGHA-----GFAFGSGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMT--- 106 (377)
T ss_pred CCcCCC--CChHHHHHHH----HHHHHhCCCc-----eEEeCCHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHH---
Confidence 444443 5566666666 4788999876 366889998877655 578999999999987765432100
Q ss_pred hhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEecccccc
Q 018300 214 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISG 291 (358)
Q Consensus 214 ~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~G 291 (358)
..+...|. ++..++ ..|++++++.+++ ++|+|++..+++| ...|+++|.++|+++|+++++|+++..+
T Consensus 107 -~~~~~~G~--~v~~v~------~~d~~~l~~ai~~-~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~ 176 (377)
T PRK07671 107 -KVLNRFGI--EHTFVD------TSNLEEVEEAIRP-NTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTP 176 (377)
T ss_pred -HHHhcCCe--EEEEEC------CCCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 11223454 444432 2388999998864 7899988777655 5789999999999999999999998644
Q ss_pred ccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhh
Q 018300 292 LVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 292 l~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
.. ..|++ ++|++++|++|++.||. +|+++++++ ++.+++..
T Consensus 177 ~~-----~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~-----~l~~~~~~ 221 (377)
T PRK07671 177 YW-----QSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSP-----ELAEDLHF 221 (377)
T ss_pred cc-----CChhhhCCeEEEecCcccccCCccceeEEEEeCcH-----HHHHHHHH
Confidence 32 24566 89999999999999885 688887765 56666554
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=158.83 Aligned_cols=180 Identities=23% Similarity=0.248 Sum_probs=128.2
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
+++..+++|+ ++++++|.+. .+.+.||+.|+..++.++++|||+|+++++.|++...... ......+
T Consensus 49 ~~p~~~~le~----~lA~l~g~~~-----v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~----~~~~~~~ 115 (382)
T TIGR02080 49 GNPTRDLLQQ----ALAELEGGAG-----AVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLN----ALAKKGC 115 (382)
T ss_pred CCchHHHHHH----HHHHHhCCCc-----EEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHH----HHHhhcC
Confidence 4555566665 4788888643 3566788889999999999999999999988876432110 0011112
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
. ++..+ + ..|.+++++.++. ++|+|++..+++| ...|+++|.++|+++|+++++|++|+.+.. .
T Consensus 116 ~--~v~~~--d----~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~-----~ 181 (382)
T TIGR02080 116 F--RVLFV--D----QGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPAL-----Q 181 (382)
T ss_pred e--EEEEE--C----CCCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence 2 32221 2 2478999998864 7899988776664 578999999999999999999999876643 2
Q ss_pred CCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhhc-cCCccccccc
Q 018300 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNA-VFPGLQVGFV 353 (358)
Q Consensus 300 ~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~~-~f~g~q~~~~ 353 (358)
.|+. ++|++++|++|++.|+. +|+++++++ ++.+++... .+.|...+|+
T Consensus 182 ~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~-----~~~~~l~~~~~~~g~~~sp~ 235 (382)
T TIGR02080 182 NPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDP-----QVAEELAWWANNLGVTGGAF 235 (382)
T ss_pred CchhhCCCEEEeecceeccCCCCceeEEEEeCCH-----HHHHHHHHHHHccCCCCCHH
Confidence 4556 89999999999998764 688888765 666666543 3335555554
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-17 Score=160.87 Aligned_cols=177 Identities=24% Similarity=0.295 Sum_probs=127.1
Q ss_pred CCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccc
Q 018300 132 EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFM 211 (358)
Q Consensus 132 ~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~ 211 (358)
.++.+.|+ |++..+.+|+. ++++.|.+. .+.+.||+.|+.+++.+++++||+|+.++..|++.....
T Consensus 45 ~~~~Y~R~--gnPt~~~le~~----la~Le~g~~-----a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~-- 111 (386)
T PF01053_consen 45 KGYIYSRY--GNPTVRALEQR----LAALEGGED-----ALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLL-- 111 (386)
T ss_dssp SSCSBTTT--C-HHHHHHHHH----HHHHHT-SE-----EEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHH--
T ss_pred CCcceecc--ccccHHHHHHH----HHHhhcccc-----eeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhh--
Confidence 45666665 78888888764 788999876 366789999999999999999999999987777643211
Q ss_pred cchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCCHHHHHHHHHHcC-CEEEEeccc
Q 018300 212 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVG-ALLMMDMAH 288 (358)
Q Consensus 212 ~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~dl~~I~~ia~e~g-~~livD~Ah 288 (358)
. ......|. ++..+ | .-|++++++.+++ ++++|+++.+.+|. ..|+++|+++||++| +++++|++-
T Consensus 112 ~--~~l~~~gv--~v~~~--d----~~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~ 180 (386)
T PF01053_consen 112 E--ELLPRFGV--EVTFV--D----PTDLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTF 180 (386)
T ss_dssp H--HCHHHTTS--EEEEE--S----TTSHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTT
T ss_pred h--hhhcccCc--EEEEe--C----chhHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccc
Confidence 0 11222454 44443 2 2488999999875 89999999888774 789999999999999 999999985
Q ss_pred cccccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeC-CCCchhHHHHHHhh
Q 018300 289 ISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK-DPVLGVELESAINN 342 (358)
Q Consensus 289 ~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~-~~~~~~~~~~~i~~ 342 (358)
+.+ ....|++ |||+++.|+.|++.|.. ||+|++++ + ++.+++..
T Consensus 181 atp-----~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~-----~~~~~l~~ 229 (386)
T PF01053_consen 181 ATP-----YNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSS-----ELYDRLRE 229 (386)
T ss_dssp THT-----TTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHH-----HHHHHHHH
T ss_pred cce-----eeeccCcCCceEEEeeccccccCCcceeeEEEEECchh-----hhhhhhcc
Confidence 544 3346788 99999999999999886 79999876 3 55555543
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.3e-17 Score=161.21 Aligned_cols=159 Identities=16% Similarity=0.193 Sum_probs=121.8
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
|++.++.+|+. ++++.|.+++ +.+.||+.|+.+++.++++|||+|+++.+.|++..... . ..+...|
T Consensus 59 ~nPtv~~lE~~----la~leg~~~a-----v~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~--~--~~l~~~G 125 (432)
T PRK06702 59 GNPTLAAFEQK----LAELEGGVGA-----VATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLF--G--VSLRKLG 125 (432)
T ss_pred CCcHHHHHHHH----HHHHhCCCcE-----EEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHH--H--HHHHHCC
Confidence 56777777764 7889999873 67899999999999999999999999988777643210 0 1123446
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCCHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
. ++..++ ..+|++++++++++ ++|+|+++.+.+|. ..|+++|+++|+++|+++++|++.+.. ...
T Consensus 126 i--~v~~vd-----~~~d~~~l~~~I~~-~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP-----~~~ 192 (432)
T PRK06702 126 I--DVTFFN-----PNLTADEIVALAND-KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATP-----YLC 192 (432)
T ss_pred C--EEEEEC-----CCCCHHHHHHhCCc-CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCch-----hhC
Confidence 5 444432 24789999999875 79999987766664 679999999999999999999986433 234
Q ss_pred CCCC-CCcEEEEcCcCcCccCc---EEEEEE
Q 018300 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFF 326 (358)
Q Consensus 300 ~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~ 326 (358)
.|++ |||+++.|++|++.|+. ||+++.
T Consensus 193 ~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~ 223 (432)
T PRK06702 193 QAFEHGANIIVHSTTKYIDGHASSLGGIVID 223 (432)
T ss_pred ChhhcCCCEEEEccccccCCCcceeceEEEe
Confidence 6777 99999999999998876 366664
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-16 Score=151.58 Aligned_cols=195 Identities=17% Similarity=0.156 Sum_probs=134.6
Q ss_pred cccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHH
Q 018300 106 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (358)
Q Consensus 106 ~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~ 185 (358)
.+.|++..+++.|++++.... +++ ...+.+.+++ +++.+++++|+++... ..+.+.+||.++..++
T Consensus 2 ~~~p~p~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~-~~~~la~~~~~~~~~~-~i~~~~~gt~~l~~~~ 67 (355)
T TIGR03301 2 LLTPGPLSTSATVRDAMLVDW-CHW-----------DSEFNDVTDQ-VRDRLLALAGGDDNHT-CVLLQGSGTFAVEATI 67 (355)
T ss_pred cCcCCCCCCCHHHHHHhhhhc-cCC-----------CHHHHHHHHH-HHHHHHHHhcCCCCCc-EEEEeCCcHHHHHHHH
Confidence 467889999999999997632 111 1122334444 6888999999986421 1234678999999999
Q ss_pred HHhccCCCEEEecCCC-CCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc-CCeEEEEcC--CC
Q 018300 186 TAILKPHDRIMGLDLP-HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGA--SA 261 (358)
Q Consensus 186 ~all~pGD~Vl~~~~~-~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~-~~klIi~~~--s~ 261 (358)
.+++++||+|++.+.. ++..+. ......|..+ ..++.+ +++.+|++++++.++.. ++++|++.. +.
T Consensus 68 ~~~~~~~~~vi~~~~~~~~~~~~-------~~a~~~g~~~--~~i~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~ 137 (355)
T TIGR03301 68 GSLVPRDGKLLVLINGAYGERLA-------KICEYLGIPH--TDLNFS-EYEPPDLNRIEEALAADPDITHVATVHHETT 137 (355)
T ss_pred HhccCCCCeEEEECCCchhhHHH-------HHHHHcCCce--EEEecC-CCCCCCHHHHHHHHHhCCCceEEEEEecCCc
Confidence 9999999987765432 221110 1123345544 344444 34688999999988642 345555433 33
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 262 ~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+|...|+++|.++|+++|+++++|++|+.|.. +.++. ++|++++|+||+|.||.| |+++.+++
T Consensus 138 ~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~-----~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~ 203 (355)
T TIGR03301 138 TGILNPLEAIAKVARSHGAVLIVDAMSSFGAI-----PIDIEELDVDALIASANKCLEGVPGFGFVIARRD 203 (355)
T ss_pred ccchhHHHHHHHHHHHcCCEEEEEeccccCCc-----ccchhhcCccEEEecCCcccccCCceeEEEECHH
Confidence 57788999999999999999999999887642 22233 789999999999988877 89988874
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=157.49 Aligned_cols=174 Identities=20% Similarity=0.221 Sum_probs=126.6
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
||.+.|| +++..+++|+. +++++|++. .+.+.||+.|+..++ ++++|||+|++.++.|++.....
T Consensus 43 ~~~y~r~--~~pt~~~le~~----la~l~g~~~-----~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~--- 107 (366)
T PRK08247 43 GFDYSRT--GNPTRGVLEQA----IADLEGGDQ-----GFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLF--- 107 (366)
T ss_pred CccccCC--CCchHHHHHHH----HHHHhCCCc-----EEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHH---
Confidence 4555554 55666677764 789999987 367889999998765 67899999999988777642210
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCCHHHHHHHHHHcCCEEEEeccccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~dl~~I~~ia~e~g~~livD~Ah~~ 290 (358)
...+...|. ++..++ ..|++++++.+++ ++|+|++..+++|. ..|+++|.++|+++|+++++|+++..
T Consensus 108 -~~~~~~~G~--~v~~vd------~~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~ 177 (366)
T PRK08247 108 -EEHWKKWNV--RFVYVN------TASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYT 177 (366)
T ss_pred -HHHhhccCc--eEEEEC------CCCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 011223454 344432 2488999998865 78999987777663 57899999999999999999999865
Q ss_pred cccccCCccCCCC-CCcEEEEcCcCcCccC---cEEEEEEeCCCCchhHHHHHHh
Q 018300 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 291 Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp---~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
++. ..|++ ++|++++|++|++.|+ .+|+++++++ ++.+++.
T Consensus 178 ~~~-----~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~-----~l~~~~~ 222 (366)
T PRK08247 178 PVL-----QRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQ-----ELCERLA 222 (366)
T ss_pred ccc-----cCchhcCCcEEEeecceeccCCCceeeeEEecChH-----HHHHHHH
Confidence 543 23555 8999999999999886 5799888754 5555544
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=161.66 Aligned_cols=160 Identities=21% Similarity=0.223 Sum_probs=118.1
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
|++..+.+|+ ++++++|.+. .+.++||+.|+.+++ .+++|||+|+++++.|+++..... ..+...|
T Consensus 131 gnpt~~aLE~----~lA~leg~e~-----ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~----~~l~~~G 196 (464)
T PLN02509 131 GNPTRDALES----LLAKLDKADR-----AFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLS----QVVPRSG 196 (464)
T ss_pred CCHHHHHHHH----HHHHHhCCCE-----EEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHH----HHHHHCC
Confidence 6776666665 4778888765 366789988876544 679999999999888776531100 0122345
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
. ++..++ ..|++++++.+.. ++|+|++..+++ +...|+++|.++|+++|+++++|++|+.+.. .
T Consensus 197 ~--~v~~vd------~~d~e~l~~ai~~-~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~-----~ 262 (464)
T PLN02509 197 V--VVKRVN------TTNLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVL-----S 262 (464)
T ss_pred e--EEEEeC------CCCHHHHHHhCCc-CCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccccc-----C
Confidence 4 333432 2478999988864 789998876665 4678999999999999999999999987754 2
Q ss_pred CCCC-CCcEEEEcCcCcCccCc---EEEEEEeCC
Q 018300 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (358)
Q Consensus 300 ~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~ 329 (358)
.+++ ++|++++|++|+|.|+. ||+++++++
T Consensus 263 ~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~ 296 (464)
T PLN02509 263 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 296 (464)
T ss_pred ChhhcCCcEEEecCcccccCCCccceeEEEeccH
Confidence 4566 89999999999999865 688887765
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-16 Score=156.77 Aligned_cols=200 Identities=10% Similarity=0.011 Sum_probs=138.8
Q ss_pred CCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCC-C-CCCcceEEeCCCHHHHHHHHHHh
Q 018300 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-E-NKWGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 111 ~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~-~-~~~~v~V~~~SGt~A~~~a~~al 188 (358)
..++.|.+.+++.+.+...+ |+|.+ .|.. . ++|+.+++++++++|++ . ++. ..+++++||+||+.++.+.
T Consensus 50 tt~~~p~~~~~~~~~l~~~~--~np~s---~~~~-~-~le~~~~~~la~llg~~~~~~~~-~g~~TsGgTEAn~~al~~a 121 (431)
T TIGR01788 50 TTWMEPEARKLMDETINKNM--IDKDE---YPQT-A-EIENRCVNMLADLWHAPAKDAEA-VGTSTIGSSEAIMLGGLAM 121 (431)
T ss_pred CCCCCHHHHHHHHHHHhcCC--CCccc---CccH-H-HHHHHHHHHHHHHhCCCCCCCCC-eEEEechHHHHHHHHHHHH
Confidence 46678889999988775433 45542 2332 2 78889999999999998 2 232 2233567889999988654
Q ss_pred c--------cCC-----CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEE
Q 018300 189 L--------KPH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 255 (358)
Q Consensus 189 l--------~pG-----D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klI 255 (358)
. +.| -+|++++.+|.+.. +.....|. ++..++++++++.+|+++|++.+++ ++.+|
T Consensus 122 r~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~--------ka~~~lg~--~v~~i~~d~~~~~vd~~~L~~~i~~-~t~lV 190 (431)
T TIGR01788 122 KWRWRKRMEAAGKPTDKPNLVMGSNVQVCWE--------KFARYFDV--ELREVPMDPGRYVIDPEQVVEAVDE-NTIGV 190 (431)
T ss_pred HHHHHHHHHhcCCCCCCcEEEEcCcchHHHH--------HHHHHcCc--eeEEEecCCCceeeCHHHHHHHHhh-CCeEE
Confidence 2 112 36777776443321 23334454 3444556653458999999999875 67777
Q ss_pred EEcC--CCCCCCCCHHHHHHHHHHc------CCEEEEeccccccccc--cCCccCCC--CCCcEEEEcCcCcCccCcE-E
Q 018300 256 IAGA--SAYPRDFDYPRMRQIADAV------GALLMMDMAHISGLVA--ASVVADPF--KYCDVVTTTTHKSLRGPRG-G 322 (358)
Q Consensus 256 i~~~--s~~~~~~dl~~I~~ia~e~------g~~livD~Ah~~Gl~~--~g~~~~pl--~gaDiv~~S~hK~L~Gp~G-G 322 (358)
++.. +..|...|+++|.++|+++ |+++++|+||+.+... .+..+..+ .++|.+++|+||++.||.| |
T Consensus 191 ~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G 270 (431)
T TIGR01788 191 VCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVG 270 (431)
T ss_pred EEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcE
Confidence 6643 3467899999999999999 9999999999855431 12223333 3899999999999889998 8
Q ss_pred EEEEeCC
Q 018300 323 MIFFKKD 329 (358)
Q Consensus 323 ~I~~~~~ 329 (358)
+++.+++
T Consensus 271 ~l~~r~~ 277 (431)
T TIGR01788 271 WVIWRDE 277 (431)
T ss_pred EEEEeCh
Confidence 8888875
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=159.09 Aligned_cols=208 Identities=16% Similarity=0.112 Sum_probs=130.8
Q ss_pred cccc-ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHH
Q 018300 105 LELI-ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (358)
Q Consensus 105 i~li-as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~ 183 (358)
+.|- .+-.++|+.|++++...+.. +..+..+.++.+...+. .+++..+ .+ +++|+++++ .++..|+|.++..
T Consensus 29 iyld~~a~g~~p~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~-~~-~l~g~~~~~---v~~~~~~t~~l~~ 101 (406)
T TIGR01814 29 IYLDGNSLGLMPKAARNALKEELDK-WAKIAIRGHNTGKAPWF-TLDESLL-KL-RLVGAKEDE---VVVMNTLTINLHL 101 (406)
T ss_pred EEecCCCcCcCcHHHHHHHHHHHHH-HHHhhhccCccCCCChh-hhhhhhc-cc-cccCCCCCc---EEEeCCchHHHHH
Confidence 4444 45557799999999876543 32111111121111112 2233223 34 799998753 2455567779999
Q ss_pred HHHHhccCCC---EEEecCCCCCcccccccccchhccccCCceEE--EEeceecCCCCCCCHHHHHHHhhh--cCCeEEE
Q 018300 184 VYTAILKPHD---RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE--SMPYRLDESTGLVDYDMLEKTAIL--FRPKLII 256 (358)
Q Consensus 184 a~~all~pGD---~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~iD~d~le~~i~~--~~~klIi 256 (358)
++.++++||| +|++.+.+|.+... .+. ..+...|..++ ...++.+ +++.+|++++++.++. .++++|+
T Consensus 102 ~~~~~~~~~~~~~~i~~~~~~~~s~~~-~~~---~~~~~~g~~~~~~~~~~~~~-~~g~~~~~~l~~~~~~~~~~t~lv~ 176 (406)
T TIGR01814 102 LLASFYKPTPKRYKILLEAKAFPSDHY-AIE---SQLQLHGLTVEESMVQIEPR-EEETLRLEDILDTIEKNGDDIAVIL 176 (406)
T ss_pred HHHHhcCCcCCccEEEecCCCCChHHH-HHH---HHHHhcCCCcccceEEeccC-CCCccCHHHHHHHHHhcCCCeEEEE
Confidence 8988877753 57776666554221 110 01223354331 1233333 3467899999887742 3678887
Q ss_pred EcCCC--CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 257 AGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 257 ~~~s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
+.+.+ .|...|+++|.++|+++|+++++|++|++|.. +..++ ++|++++|+||||.||.||+++..++
T Consensus 177 ~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~-----~id~~~~gvD~~~~s~hK~l~g~pG~~l~v~~~ 248 (406)
T TIGR01814 177 LSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNV-----PLDLHDWGVDFACWCTYKYLNAGPGAGAFVHEK 248 (406)
T ss_pred EeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCc-----ccccccCCCCEEEEcCccccCCCCCeEEEEehh
Confidence 76543 47889999999999999999999999998865 22333 89999999999997666766666553
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=153.57 Aligned_cols=202 Identities=18% Similarity=0.189 Sum_probs=131.0
Q ss_pred ccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHH
Q 018300 109 ASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT 186 (358)
Q Consensus 109 as~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~ 186 (358)
.+||+ +++.+++++....... . +| +..+..++ .++++++++| +. ..+++.+||+|+..++.
T Consensus 3 ~~~~~~~~~~~v~~a~~~~~~~~-----~--~~-~~~~~~~~----l~~~~a~~~g-~~----~~~~~~~gt~a~~~~~~ 65 (338)
T cd06502 3 RSDTVTGPTPEMLEAMAAANVGD-----D--VY-GEDPTTAK----LEARAAELFG-KE----AALFVPSGTAANQLALA 65 (338)
T ss_pred ccccCCCCCHHHHHHHHhcccCC-----c--cc-CCCHHHHH----HHHHHHHHhC-CC----eEEEecCchHHHHHHHH
Confidence 35554 5889999987643211 1 12 22232333 4556888999 33 25677899999999999
Q ss_pred HhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh------cCCeEEEEcCC
Q 018300 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL------FRPKLIIAGAS 260 (358)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~------~~~klIi~~~s 260 (358)
++++|||+|++.++.|.++..... .....|. ++..++.+ ++.+|++++++++.+ .++++|++..+
T Consensus 66 ~l~~~gd~v~~~~~~~~~~~~~~~-----~~~~~g~--~~~~v~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p 136 (338)
T cd06502 66 AHTQPGGSVICHETAHIYTDEAGA-----PEFLSGV--KLLPVPGE--NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENT 136 (338)
T ss_pred HhcCCCCeEEEecCcceeeecCCc-----HHHHcCc--eEEeecCC--CCcCCHHHHHHHhhccCCCcCCcceEEEEEee
Confidence 999999999998876554321100 1123455 34444443 367999999998864 26788877554
Q ss_pred CC-CC---CCCHHHHHHHHHHcCCEEEEeccccccccc-cCCccCCCC-CCcEEEEcCcCcCccCcEEEEEEeCCCCchh
Q 018300 261 AY-PR---DFDYPRMRQIADAVGALLMMDMAHISGLVA-ASVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGV 334 (358)
Q Consensus 261 ~~-~~---~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~-~g~~~~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~ 334 (358)
++ +. ..|+++|.++|+++|+++++|+||..+... .+.....+. ++|+++.|+||+++.|.|++++.++
T Consensus 137 ~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~------ 210 (338)
T cd06502 137 TEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNR------ 210 (338)
T ss_pred cCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCH------
Confidence 43 33 245788999999999999999998654321 121111122 7899999999999877666555555
Q ss_pred HHHHHHhh
Q 018300 335 ELESAINN 342 (358)
Q Consensus 335 ~~~~~i~~ 342 (358)
++.+++..
T Consensus 211 ~~~~~~~~ 218 (338)
T cd06502 211 DFIARARR 218 (338)
T ss_pred HHHHHHHH
Confidence 45555543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-16 Score=155.39 Aligned_cols=197 Identities=16% Similarity=0.170 Sum_probs=135.1
Q ss_pred ccCCCC----cHHHHHHHhhhhhcccCCCCCCCcCCCCc-HHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHH
Q 018300 109 ASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (358)
Q Consensus 109 as~n~~----s~~V~~al~~~l~~~~~~G~pg~r~~~G~-~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~ 183 (358)
++++|. +|.++++....+. +|..|+.+.|.+.|+ ....++| +++++++|.+. .+.++||+.|+..
T Consensus 4 ~s~dyLgl~~~~~~~~~~~~a~~-~~g~~~~~sr~~yg~~~~~~~LE----~~lA~~~g~e~-----al~~~sG~~a~~~ 73 (392)
T PLN03227 4 ATHDFLSTSSSPTLRQTALESLS-HYGCGSCGPRGFYGTIDAHLELE----QCMAEFLGTES-----AILYSDGASTTSS 73 (392)
T ss_pred cCcCccCCCCCHHHHHHHHHHHH-HhCCCCcccccccCChHHHHHHH----HHHHHHhCCCc-----EEEecCcHHHHHH
Confidence 566664 7889999887764 566677776655443 4344554 45899999986 3778999999999
Q ss_pred HHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh----------cCCe
Q 018300 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL----------FRPK 253 (358)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~----------~~~k 253 (358)
++.++++|||+|++.+..|++... .+.+.+. ++..++.+ ..-|++.+.+.+.. .+++
T Consensus 74 ~i~~l~~~GD~Vl~~~~~h~s~~~--------~~~l~~~--~~~~~~~~---d~~~l~~~~~~i~~~~~a~~~~~~~~t~ 140 (392)
T PLN03227 74 TVAAFAKRGDLLVVDRGVNEALLV--------GVSLSRA--NVRWFRHN---DMKDLRRVLEQVRAQDVALKRKPTDQRR 140 (392)
T ss_pred HHHHhCCCCCEEEEeccccHHHHH--------HHHHcCC--eEEEeCCC---CHHHHHHHHHHhhhhccccccccCCCcE
Confidence 999999999999999876655321 2223333 33333322 11233333333321 1467
Q ss_pred EEEEcCCC--CCCCCCHHHHHHHHHHcCCEEEEecccccccccc---CCcc----CCCCCCcEEEEcCcCcCccCcEEEE
Q 018300 254 LIIAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA---SVVA----DPFKYCDVVTTTTHKSLRGPRGGMI 324 (358)
Q Consensus 254 lIi~~~s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~---g~~~----~pl~gaDiv~~S~hK~L~Gp~GG~I 324 (358)
+|+++... .|...|+++|.++|+++|+++++|++|++|.... +... .|..++|++++|++|.+ ||.||++
T Consensus 141 ~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~-g~~gg~v 219 (392)
T PLN03227 141 FLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF-GSVGGMT 219 (392)
T ss_pred EEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhh-hccCcEE
Confidence 88887543 4678899999999999999999999998775432 1110 23347899999999975 6999999
Q ss_pred EEeCC
Q 018300 325 FFKKD 329 (358)
Q Consensus 325 ~~~~~ 329 (358)
+++++
T Consensus 220 ~~~~~ 224 (392)
T PLN03227 220 VGSEE 224 (392)
T ss_pred ecCHH
Confidence 88773
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=159.86 Aligned_cols=162 Identities=17% Similarity=0.149 Sum_probs=118.9
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
+++.++++|+. +++++|.+.. +.+.||+.|+..++.++++|||+|++.++.|+++..... . ......|
T Consensus 74 ~~Pt~~~LE~~----lA~l~g~~~~-----l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~--~-~~~~~~G 141 (418)
T PLN02242 74 FNPTVLNLGRQ----MAALEGTEAA-----YCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLA--H-FLPRKCN 141 (418)
T ss_pred CChhHHHHHHH----HHHHhCCCeE-----EEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHH--H-hhhhccC
Confidence 56777777764 7889999873 567899999999999999999999998877765422100 0 0011234
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
. ++..++ ..|++++++.++..++|+|+++.+++| ...|+++|.++|+++|++|++|++|... ..
T Consensus 142 ~--~~~~~d------~~d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~-~~----- 207 (418)
T PLN02242 142 I--TTTFVD------ITDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPM-VL----- 207 (418)
T ss_pred c--eEEEcC------CCCHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCcc-CC-----
Confidence 3 333322 238899999886535899988776654 5789999999999999999999998632 21
Q ss_pred CCCC-CCcEEEEcCcCcCccC--c-EEEEEEeCC
Q 018300 300 DPFK-YCDVVTTTTHKSLRGP--R-GGMIFFKKD 329 (358)
Q Consensus 300 ~pl~-gaDiv~~S~hK~L~Gp--~-GG~I~~~~~ 329 (358)
.+.+ ++|++++|++|++.|+ + ||+++++++
T Consensus 208 ~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~ 241 (418)
T PLN02242 208 SPARLGADVVVHSISKFISGGADIIAGAVCGPAE 241 (418)
T ss_pred CHHHcCCcEEEEeCccccCCCCCceEEEEEcCHH
Confidence 3344 7999999999999665 3 799998763
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-16 Score=154.73 Aligned_cols=230 Identities=14% Similarity=0.058 Sum_probs=153.5
Q ss_pred hcccccccChHHHHHHHHHHHHhhhccccc--ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHH
Q 018300 79 VDYSLGEADPEVCEIITKEKERQFKSLELI--ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKR 156 (358)
Q Consensus 79 ~~~~l~~~d~~~~~~i~~e~~~~~~~i~li--as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~ 156 (358)
+.+++..++++.+..+.+.... ..-++|- .++..+++.+++++...+.+. ..+|+. ..|.+ ++++.+.++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~-~~~Y~~---~~G~~---~Lr~aia~~ 103 (413)
T PLN00175 32 VAKRLEKFKTTIFTQMSSLAIK-HGAINLGQGFPNFDGPDFVKEAAIQAIRDG-KNQYAR---GFGVP---ELNSAIAER 103 (413)
T ss_pred hhHHhhcCCCCHHHHHHHHhhc-CCeEecCCCCCCCCCCHHHHHHHHHHHhcC-CCCcCC---CCCCH---HHHHHHHHH
Confidence 4677788888877665554332 2444544 233456888999988776542 123432 12433 577777777
Q ss_pred HHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC
Q 018300 157 ALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST 235 (358)
Q Consensus 157 la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 235 (358)
+.+.+|.+-+ +..+|.+++|+ +|+..++.++++|||+|++.++.|..+.. .+...|. +++++++++++
T Consensus 104 ~~~~~g~~~~-~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~~ 172 (413)
T PLN00175 104 FKKDTGLVVD-PEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA--------TLSMAGA--KIKTVTLRPPD 172 (413)
T ss_pred HHHHhCCCCC-CCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEEECCccc
Confidence 7777776421 11136666664 69999999999999999999886655421 2345565 44555566555
Q ss_pred CCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CC---CHHHHHHHHHHcCCEEEEeccccccccccCCccC--CCCC---C
Q 018300 236 GLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFKY---C 305 (358)
Q Consensus 236 ~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~--pl~g---a 305 (358)
+.+|+++|++.+.. ++|+|++..+++|+ .. ++++|.++|+++|+++++|+++. .+.+.+...+ .+++ -
T Consensus 173 ~~~~~~~l~~~~~~-~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~-~l~~~~~~~s~~~~~~~~~~ 250 (413)
T PLN00175 173 FAVPEDELKAAFTS-KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYD-KLAFEGDHISMASLPGMYER 250 (413)
T ss_pred CCCCHHHHHHhcCc-CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccC-ccccCCcccChhhCCCCcCc
Confidence 78999999998764 68998887777654 44 47789999999999999999975 4443332111 1222 2
Q ss_pred cEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 306 DVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 306 Div~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
.+++.|++|.+ +|.|.|+++++++
T Consensus 251 vi~i~SfSK~~~~~G~RiG~~v~~~~ 276 (413)
T PLN00175 251 TVTMNSLGKTFSLTGWKIGWAIAPPH 276 (413)
T ss_pred EEEEecchhhccCcchheeeeEeCHH
Confidence 37789999997 6788899999874
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=160.54 Aligned_cols=160 Identities=20% Similarity=0.158 Sum_probs=118.6
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
+++.++++|+ ++++++|.+. .+.+.||+.|+.+++.++++|||+|++.+..|++...-. ...+...|
T Consensus 67 ~~p~~~~Le~----~lA~l~g~~~-----av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~----~~~l~~~G 133 (436)
T PRK07812 67 MNPTQDVVEQ----RIAALEGGVA-----ALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLF----HYTLPKLG 133 (436)
T ss_pred CCchHHHHHH----HHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHH----HHHhhcCe
Confidence 4555666665 4888999987 377889999999999999999999999887776642100 00112233
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
+++..++ + ..|++++++.+++ ++++|++..+++ +...|+++|.++||++|+++++|++|+.+.. +
T Consensus 134 --i~v~~vd-d----~~d~e~l~~ai~~-~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~-----~ 200 (436)
T PRK07812 134 --IEVSFVE-D----PDDLDAWRAAVRP-NTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYL-----I 200 (436)
T ss_pred --EEEEEEC-C----CCCHHHHHHhCCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence 3444432 2 2389999988764 789998876654 5689999999999999999999999987644 3
Q ss_pred CCCC-CCcEEEEcCcCcCccCc---EEEEEEe
Q 018300 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFK 327 (358)
Q Consensus 300 ~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~ 327 (358)
.+++ |+|++++|+||+++|+. ||+++.+
T Consensus 201 ~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~ 232 (436)
T PRK07812 201 RPLEHGADIVVHSATKYLGGHGTAIAGVIVDG 232 (436)
T ss_pred CchhcCCCEEEEecccccCCCCCeEEEEEEcC
Confidence 5666 99999999999998764 3555543
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7e-16 Score=151.03 Aligned_cols=220 Identities=19% Similarity=0.202 Sum_probs=141.5
Q ss_pred ChHHHHHHHHHHHHhh--hcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 018300 87 DPEVCEIITKEKERQF--KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD 164 (358)
Q Consensus 87 d~~~~~~i~~e~~~~~--~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~ 164 (358)
+.++++++++..++.. ..+ +-....+..|.+.+++...+.... +.+. .+.+. .++++.+++++++++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~--~~~~--~~~~~---~~~~~~~~~~la~~~g~~ 75 (371)
T PRK13520 4 EEEILEELEEYRSEDLKYERI-LSSMCTEPHPIARKAHEMFLETNL--GDPG--LFPGT---AKLEEEAVEMLGELLHLP 75 (371)
T ss_pred HHHHHHHHHHHHhcCCCHHHe-eeeeecCchHHHHHHHHHHHhcCC--CCcc--cCccH---HHHHHHHHHHHHHHhCCC
Confidence 4566666655444322 212 323456778888999887665432 3332 23332 245556888999999987
Q ss_pred CCCCcceEEeCCCHHHHHHHHHHhcc----CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCH
Q 018300 165 ENKWGVNVQPLSGSPANFEVYTAILK----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240 (358)
Q Consensus 165 ~~~~~v~V~~~SGt~A~~~a~~all~----pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~ 240 (358)
.. ..+++.+|+.|+..++.++.+ +||+|++++.. |.++. +.+...|..+..++ .+ +++.+|+
T Consensus 76 ~~---~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~---h~s~~-----~~~~~~g~~~~~v~--~~-~~~~~d~ 141 (371)
T PRK13520 76 DA---YGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESA---HFSFD-----KAADMLGVELRRAP--LD-DDYRVDV 141 (371)
T ss_pred CC---CeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcc---hHHHH-----HHHHHcCceEEEec--CC-CCCcCCH
Confidence 63 135566788899988876643 68999998764 43321 12344565444444 44 3568999
Q ss_pred HHHHHHhhhcCCeEEEE-cC-CCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCC--CCCcEEEEcCcC
Q 018300 241 DMLEKTAILFRPKLIIA-GA-SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPF--KYCDVVTTTTHK 314 (358)
Q Consensus 241 d~le~~i~~~~~klIi~-~~-s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl--~gaDiv~~S~hK 314 (358)
++|++.+++ ++++|++ .. +.+|...|+++|.++|+++|+++++|++|+.+........ ..+ .++|.+++|+||
T Consensus 142 ~~l~~~i~~-~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K 220 (371)
T PRK13520 142 KAVEDLIDD-NTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHK 220 (371)
T ss_pred HHHHHHHhh-CCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCcc
Confidence 999999875 5655543 32 3467889999999999999999999999985542111111 112 278999999999
Q ss_pred cCccC-cEEEEEEeCC
Q 018300 315 SLRGP-RGGMIFFKKD 329 (358)
Q Consensus 315 ~L~Gp-~GG~I~~~~~ 329 (358)
++.+| ++|+++.+++
T Consensus 221 ~~~a~~~~G~~~~~~~ 236 (371)
T PRK13520 221 MGLAPIPAGGILFRDE 236 (371)
T ss_pred ccCccCCceEEEEcCH
Confidence 87544 4465665554
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-16 Score=169.20 Aligned_cols=214 Identities=15% Similarity=0.127 Sum_probs=137.4
Q ss_pred ccCCCCcHH-HHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeC-CCHHHHHHHHH
Q 018300 109 ASENFTSRA-VMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYT 186 (358)
Q Consensus 109 as~n~~s~~-V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~-SGt~A~~~a~~ 186 (358)
++.+++++. |.+++...+.+.+ ++|++.+..+....+.+++ +|++++++||+++.++ .|.++ ++|.|+..+..
T Consensus 41 Aatt~~~~~~V~~~~~~~~~~~~--~np~s~~~~s~~~~~~~e~-aR~~ia~~lga~~~~~--~VvFtsnaT~alnlva~ 115 (805)
T PLN02724 41 AGATLYSESQLEAALADFSSNVY--GNPHSQSDSSMRSSDTIES-ARQQVLEYFNAPPSDY--ACVFTSGATAALKLVGE 115 (805)
T ss_pred CCCCCCCHHHHHHHHHHHHhhcc--CCCCcCcchhhhHHHHHHH-HHHHHHHHhCCCccce--EEEEeCChHHHHHHHHH
Confidence 445565654 4554444444333 4555444445555556665 8999999999976432 34555 56679999988
Q ss_pred Hh-ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC-----CCCCCCH--HHHHHHhh---------h
Q 018300 187 AI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-----STGLVDY--DMLEKTAI---------L 249 (358)
Q Consensus 187 al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~iD~--d~le~~i~---------~ 249 (358)
++ +++||+|+++..+|.+.+. .+ ..+...|..++.++++.+. +.+.+|. +++++.++ .
T Consensus 116 ~l~~~~gd~Iv~t~~eH~svl~-~~----~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~ 190 (805)
T PLN02724 116 TFPWSSESHFCYTLENHNSVLG-IR----EYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDG 190 (805)
T ss_pred HCCCCCCCeEEEeeccccchHH-HH----HHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccC
Confidence 88 8999999998888876542 11 1223346555554432111 2234443 56766531 1
Q ss_pred cCCeEEEEcC-CC-CCCCCCHHHHHHHHHHc--------CCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCc
Q 018300 250 FRPKLIIAGA-SA-YPRDFDYPRMRQIADAV--------GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLR 317 (358)
Q Consensus 250 ~~~klIi~~~-s~-~~~~~dl~~I~~ia~e~--------g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~ 317 (358)
.+++||.+.+ ++ +|...|++.|.++++.. ++++++|+||++|.. +..+. ++|++++|+||+++
T Consensus 191 ~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~-----piDv~~~~~Dfl~~S~HK~~G 265 (805)
T PLN02724 191 EAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTS-----PPDLSRYPADFVVVSFYKIFG 265 (805)
T ss_pred CCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCC-----CCChhhcCCCEEEEecceecc
Confidence 2457887754 33 58899999775555532 368999999998865 33343 89999999999988
Q ss_pred cCcE-EEEEEeCCCCchhHHHHHHhhc
Q 018300 318 GPRG-GMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 318 Gp~G-G~I~~~~~~~~~~~~~~~i~~~ 343 (358)
||.| |+++.++ ++.+++...
T Consensus 266 gP~G~G~L~vr~------~~~~~l~p~ 286 (805)
T PLN02724 266 YPTGLGALLVRR------DAAKLLKKK 286 (805)
T ss_pred CCCCceEEEEeh------hhhhhhcCC
Confidence 8998 8998887 444555443
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=158.70 Aligned_cols=161 Identities=18% Similarity=0.109 Sum_probs=119.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccC
Q 018300 141 GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT 220 (358)
Q Consensus 141 ~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~ 220 (358)
.|++..+.+|+. ++.+.+.+. .+.+.||+.|+.+++.++++|||+|+++++.|+++.... ...+...
T Consensus 61 ~gnPt~~~Le~~----la~le~~~~-----~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~----~~~l~~~ 127 (395)
T PRK05967 61 RGTPTTDALCKA----IDALEGSAG-----TILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFC----DTMLKRL 127 (395)
T ss_pred CCChHHHHHHHH----HHHHhCCCC-----EEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHH----HHHHHhc
Confidence 477877777664 667777654 377889999999999999999999999998777753210 0112344
Q ss_pred CceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccccccccCCc
Q 018300 221 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 298 (358)
Q Consensus 221 g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~ 298 (358)
|.. +..++.+ +.+++++.+++ ++|+|+++.++++ ...|+++|+++|+++|+++++|++++.++.
T Consensus 128 Gi~--v~~vd~~------~~e~l~~al~~-~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~----- 193 (395)
T PRK05967 128 GVE--VEYYDPE------IGAGIAKLMRP-NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLY----- 193 (395)
T ss_pred CeE--EEEeCCC------CHHHHHHhcCc-CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCcee-----
Confidence 553 3333221 34778888864 7899999876665 468999999999999999999999765432
Q ss_pred cCCCC-CCcEEEEcCcCcCccCc---EEEEEEeC
Q 018300 299 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK 328 (358)
Q Consensus 299 ~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~ 328 (358)
..|++ |+|+++.|++|+++|.. +|+++.++
T Consensus 194 ~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~ 227 (395)
T PRK05967 194 FRPLDFGVDISIHAATKYPSGHSDILLGTVSANE 227 (395)
T ss_pred cChhHcCCCEEEEecccccCCCCCeeEEEEEcCH
Confidence 36778 99999999999988754 57766554
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=153.05 Aligned_cols=194 Identities=20% Similarity=0.156 Sum_probs=139.0
Q ss_pred cccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHH
Q 018300 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (358)
Q Consensus 104 ~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~ 183 (358)
...+..+..|.-....++.... .- ...||.++|. +|+..+.+|+ |++.+-|--.. +.+.||..|+..
T Consensus 26 a~PIyqtTsy~F~d~~haa~lF-~l-~~~G~iYsRi--~NPT~~vlE~----RiAaLEGG~aa-----~a~aSG~AA~~~ 92 (426)
T COG2873 26 AVPIYQTTSYVFDDTDHAAALF-GL-KEPGNIYTRI--MNPTTDVLEE----RIAALEGGVAA-----LAVASGQAAITY 92 (426)
T ss_pred ecceeeeeeeecCCHHHHHHHh-CC-CcCCceeeec--cCchHHHHHH----HHHHhhcchhh-----hhhccchHHHHH
Confidence 3445556666644444443322 11 1237777665 6777888876 57888776653 567899999999
Q ss_pred HHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC
Q 018300 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP 263 (358)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~ 263 (358)
++..+.++||+|+..+.-|||....- . ..+...|. ++.++ + ..|++.+++.+++ ++|+|+++.-.+|
T Consensus 93 ai~~la~aGD~iVss~~LYGGT~~lf--~--~tl~~~Gi--~v~fv--d----~~d~~~~~~aI~~-nTkavf~EtigNP 159 (426)
T COG2873 93 AILNLAGAGDNIVSSSKLYGGTYNLF--S--HTLKRLGI--EVRFV--D----PDDPENFEAAIDE-NTKAVFAETIGNP 159 (426)
T ss_pred HHHHhccCCCeeEeeccccCchHHHH--H--HHHHhcCc--EEEEe--C----CCCHHHHHHHhCc-ccceEEEEeccCC
Confidence 99999999999999988899864311 1 01233454 44442 2 3468999999875 8999999876676
Q ss_pred C--CCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeC
Q 018300 264 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK 328 (358)
Q Consensus 264 ~--~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~ 328 (358)
. ..|+++|.++||++|+++++|++-+ .+.+..|++ |+|+|+.|+.||++|.. ||+|+-..
T Consensus 160 ~~~v~Die~ia~iAh~~gvpliVDNT~a-----tpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G 225 (426)
T COG2873 160 GLDVLDIEAIAEIAHRHGVPLIVDNTFA-----TPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGG 225 (426)
T ss_pred CccccCHHHHHHHHHHcCCcEEEecCCC-----cceecchhhcCCCEEEEeecccccCCccccceEEEeCC
Confidence 4 7899999999999999999999743 334457888 99999999999998753 46666443
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.3e-16 Score=152.54 Aligned_cols=165 Identities=18% Similarity=0.143 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhccC--CCEEEecCCCCCcccccccccchhccccCC--c
Q 018300 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKP--HDRIMGLDLPHGGHLSHGFMTPKRRVSGTS--I 222 (358)
Q Consensus 148 ~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~p--GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g--~ 222 (358)
++.+.+++++++++|++.++ + +++.+|+. ++.+++.+++++ ||+|+++++.|+++.. .+...+ .
T Consensus 64 ~~~~~~~~~la~~~g~~~~~--v-~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~--------~~~~~~~~~ 132 (398)
T cd00613 64 QALFELQTMLCELTGMDVAN--A-SLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPA--------VARTRGEPL 132 (398)
T ss_pred HHHHHHHHHHHHHHCCCccc--e-eccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHH--------HHHHhcccC
Confidence 56666788899999997532 2 33455554 555556666776 9999999987776532 112222 0
Q ss_pred eEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-CCCCCCH-HHHHHHHHHcCCEEEEeccccccccccCCccC
Q 018300 223 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRDFDY-PRMRQIADAVGALLMMDMAHISGLVAASVVAD 300 (358)
Q Consensus 223 ~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-~~~~~dl-~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~ 300 (358)
..++..++++ +++.+|++++++.+.+ ++++|+++.++ .|...|+ ++|+++|+++|+++++|++|..|.... .
T Consensus 133 g~~~~~v~~~-~~~~~d~~~l~~~i~~-~t~~viv~~~~~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~----~ 206 (398)
T cd00613 133 GIEVVEVPSD-EGGTVDLEALKEEVSE-EVAALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLK----P 206 (398)
T ss_pred CcEEEEeccC-CCCCcCHHHHHHhcCC-CeEEEEEECCCCCceecchHHHHHHHHHhcCCEEEEEeccccccCCC----C
Confidence 1234444454 2457899999998864 68888776544 4566775 999999999999999999987654210 1
Q ss_pred CCC-CCcEEEEcCcCcC-----ccCcEEEEEEeCC
Q 018300 301 PFK-YCDVVTTTTHKSL-----RGPRGGMIFFKKD 329 (358)
Q Consensus 301 pl~-gaDiv~~S~hK~L-----~Gp~GG~I~~~~~ 329 (358)
+-. ++|++++|+||++ +||++|+++.+++
T Consensus 207 ~~~~~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~ 241 (398)
T cd00613 207 PGEYGADIVVGNLQKTGVPHGGGGPGAGFFAVKKE 241 (398)
T ss_pred hHHcCCCEEEeeccccCCCCCCCCCceeEEEEhhh
Confidence 112 7999999999997 2467789988764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-15 Score=148.34 Aligned_cols=229 Identities=15% Similarity=0.183 Sum_probs=147.7
Q ss_pred ccccccChHHHHHHHHHHHHhhhcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la 158 (358)
.++..+.+.++..+.+.. .+..-++|-.+++ .+++.+.+++...+.... .+|+. ..|. .++++.++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-~~Y~~---~~G~---~~lr~~ia~~l~ 80 (384)
T PRK12414 9 SKLPDVGTTIFTVIGQLA-AQHDALNLSQGAPNFAPDPALVEGVARAMRDGH-NQYAP---MAGI---AALREALAEKTE 80 (384)
T ss_pred HhcccCCccHHHHHHHHH-HhCCeEEcCCCCCCCCCCHHHHHHHHHHHHhCC-CCcCC---CCCc---HHHHHHHHHHHH
Confidence 344455555655544332 2334456544333 458888888877654321 23322 1233 356677788888
Q ss_pred HHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCC
Q 018300 159 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 238 (358)
Q Consensus 159 ~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 238 (358)
+++|++.....-.+.+.+|+.|+..++.++++|||+|+++++.|.++.. .+...|. +++.+++++++..+
T Consensus 81 ~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~ 150 (384)
T PRK12414 81 RLYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAP--------IVRLQGA--TPVAIKLSPEDFRV 150 (384)
T ss_pred HHhCCCCCCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccchHH--------HHHHcCC--EEEEEecCcccccc
Confidence 9999853100012334455679999999999999999999887654321 2234565 45555566545679
Q ss_pred CHHHHHHHhhhcCCeEEEEcCCCCCC--C---CCHHHHHHHHHHcCCEEEEeccccccccccCCccCCC---CC---CcE
Q 018300 239 DYDMLEKTAILFRPKLIIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY---CDV 307 (358)
Q Consensus 239 D~d~le~~i~~~~~klIi~~~s~~~~--~---~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~g---aDi 307 (358)
|++++++.++. ++|+|++..+++|+ . .++++|.++|+++|+++++|+++. .+.+.+....++ +. --+
T Consensus 151 d~~~l~~~l~~-~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~-~~~~~~~~~~~~~~~~~~~~~~i 228 (384)
T PRK12414 151 NWDEVAAAITP-RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYE-HVVFDGARHHSMARHRELAERSV 228 (384)
T ss_pred CHHHHHhhcCc-ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhh-hccCCCCCccCcccCcCccCcEE
Confidence 99999998864 78988887666654 3 368889999999999999999976 333333211122 11 238
Q ss_pred EEEcCcCcC--ccCcEEEEEEeCC
Q 018300 308 VTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 308 v~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
++.|++|.+ +|.|.|+++++++
T Consensus 229 ~~~SfSK~~~~pGlRiG~~v~~~~ 252 (384)
T PRK12414 229 IVSSFGKSYHVTGWRVGYCLAPAE 252 (384)
T ss_pred EEecccccccCccceEEEEecCHH
Confidence 899999987 6778899998874
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-16 Score=158.04 Aligned_cols=160 Identities=21% Similarity=0.159 Sum_probs=119.8
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
+++..+.+|+. ++++.|.+. .+.+.||+.|+..++.++++|||+|+++++.|++.+.. + ...+...|
T Consensus 62 ~~p~~~~Le~~----lA~leg~~~-----al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~-~---~~~~~~~G 128 (431)
T PRK08248 62 MNPTTDVFEKR----IAALEGGIG-----ALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNL-F---AHTLPKLG 128 (431)
T ss_pred CCchHHHHHHH----HHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHH-H---HHHHHhCC
Confidence 45556667664 788999776 37789999999999999999999999998877664321 0 01123345
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
. ++..++. .|++++++.+++ ++++|++..+++ +...|+++|.++|+++|+++++|++++.+.. .
T Consensus 129 v--~v~~vd~------~d~e~l~~ai~~-~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~-----~ 194 (431)
T PRK08248 129 I--TVKFVDP------SDPENFEAAITD-KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYL-----L 194 (431)
T ss_pred E--EEEEECC------CCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcccc-----C
Confidence 4 4455432 388999998865 789998876554 4688999999999999999999999875432 3
Q ss_pred CCCC-CCcEEEEcCcCcCccCc---EEEEEEeC
Q 018300 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK 328 (358)
Q Consensus 300 ~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~ 328 (358)
.|++ |+|++++|+||+++||. ||+++.+.
T Consensus 195 ~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~ 227 (431)
T PRK08248 195 RPIEHGADIVVHSATKFIGGHGTSIGGVIVDSG 227 (431)
T ss_pred ChhHcCCCEEEEcCccccCCCCCceEEEEEeCC
Confidence 4566 99999999999998874 57666544
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=157.65 Aligned_cols=166 Identities=20% Similarity=0.156 Sum_probs=120.6
Q ss_pred CCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccc
Q 018300 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (358)
Q Consensus 134 ~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (358)
|.+.|+ +++..+++|+ ++++++|.+. .+.+.||+.|+..++.++++|||+|++.++.|++.....
T Consensus 50 ~~y~r~--~~pt~~~Le~----~lA~l~g~~~-----~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~---- 114 (425)
T PRK06084 50 NIYTRI--MNPTNDVLEQ----RVAALEGGVG-----ALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLL---- 114 (425)
T ss_pred ccccCC--CCchHHHHHH----HHHHHhCCCc-----eeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHH----
Confidence 444443 4455556665 4788999765 366789999999999999999999999887776543210
Q ss_pred hhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEecccccc
Q 018300 214 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISG 291 (358)
Q Consensus 214 ~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~G 291 (358)
...+...| +++..++ ..|++++++.+++ ++|+|++..+++ +...|+++|.++|+++|+++++|++|+.+
T Consensus 115 ~~~l~~~g--i~v~~~d------~~d~e~le~ai~~-~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~ 185 (425)
T PRK06084 115 AHTLPRIG--IETRFAA------HDDIAALEALIDE-RTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATP 185 (425)
T ss_pred HHhcccce--eEEEEEC------CCCHHHHHHHhcc-CCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 00111123 2333322 2489999998864 789998876554 46889999999999999999999999866
Q ss_pred ccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeC
Q 018300 292 LVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK 328 (358)
Q Consensus 292 l~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~ 328 (358)
.. ..|++ ++|++++|+||+++|+. ||+|+.++
T Consensus 186 ~~-----~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~ 221 (425)
T PRK06084 186 VL-----CRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSG 221 (425)
T ss_pred cc-----CChhhcCCCEEEECchhcccccccceeEEEEeCC
Confidence 43 34566 89999999999998764 67777643
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-16 Score=156.41 Aligned_cols=173 Identities=18% Similarity=0.245 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEE
Q 018300 146 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE 225 (358)
Q Consensus 146 ~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~ 225 (358)
..++|+. ++++||.++ .+.+.+|+.|+..++.++++|||+|+ +++.+..+. ..+...|. +
T Consensus 55 ~~~Leea----ia~~~g~~~-----vv~t~~Gt~Al~la~~al~~pGD~V~-~~~~f~~~~--------~~i~~~Ga--~ 114 (431)
T cd00617 55 FYDLEDA----VQDLFGFKH-----IIPTHQGRGAENILFSILLKPGRTVP-SNMHFDTTR--------GHIEANGA--V 114 (431)
T ss_pred HHHHHHH----HHHHHCCCe-----EEEcCCHHHHHHHHHHHhCCCCCEEc-cCCcccchH--------HHHHhCCC--E
Confidence 3456654 778999976 36678999999999999999999874 443222111 13445665 4
Q ss_pred EEeceecCC---------CCCCCHHHHHHHhhhc---CCeEEEEcCCCC---CCCCC---HHHHHHHHHHcCCEEEEecc
Q 018300 226 SMPYRLDES---------TGLVDYDMLEKTAILF---RPKLIIAGASAY---PRDFD---YPRMRQIADAVGALLMMDMA 287 (358)
Q Consensus 226 ~~~~~~~~~---------~~~iD~d~le~~i~~~---~~klIi~~~s~~---~~~~d---l~~I~~ia~e~g~~livD~A 287 (358)
++.+++++. ++.+|+++|++.+.+. ++++|+++.+++ |...+ +++|.++|+++|++|+.|+|
T Consensus 115 pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaA 194 (431)
T cd00617 115 PVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAA 194 (431)
T ss_pred eEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEch
Confidence 455555432 3569999999998753 367787765554 45554 56789999999999999999
Q ss_pred ccccccc------cCCccCC--------CCCCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 288 HISGLVA------ASVVADP--------FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 288 h~~Gl~~------~g~~~~p--------l~gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
|..+-.. .+....+ +.++|.+++|++|.+.++-||+|+++++ ++.++++..
T Consensus 195 r~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~-----~l~~~~~~~ 259 (431)
T cd00617 195 RFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIGGFLALRDD-----ELYEEARQR 259 (431)
T ss_pred hhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccceEEEeCcH-----HHHHHHHHh
Confidence 9865211 1222222 1278999999999998999999999986 677777753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=149.68 Aligned_cols=187 Identities=21% Similarity=0.166 Sum_probs=123.6
Q ss_pred cHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCE
Q 018300 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDR 194 (358)
Q Consensus 115 s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~ 194 (358)
+|.+.++....+. +|. |.. ++.+..++++++++|.++++ .+.+++|+.||..++.++++|||+
T Consensus 35 ~~~~~~~~~~~~~-~~~----------g~~---~~~~~Le~~lA~~~g~~~e~---ilv~~gg~~a~~~~~~al~~~gd~ 97 (346)
T TIGR03576 35 GFKIDEEDLELLE-TYV----------GPA---IFEEKVQELGREHLGGPEEK---ILVFNRTSSAILATILALEPPGRK 97 (346)
T ss_pred ChhHHHHHHHHHH-Hhc----------CCH---HHHHHHHHHHHHHcCCCcce---EEEECCHHHHHHHHHHHhCCCCCE
Confidence 7888888766543 331 222 23444566789999996542 355677888999999999999999
Q ss_pred EEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-CCCC---CCHHH
Q 018300 195 IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRD---FDYPR 270 (358)
Q Consensus 195 Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-~~~~---~dl~~ 270 (358)
|+++.++...|.++. ..+.+.|.. +.. . .|+++++. . .++++|++..++ .|.. .|+++
T Consensus 98 Vli~~~d~p~~~s~~-----~~~~l~ga~--~~~--~------~~l~~l~~-~--~~~~lIiitg~s~~G~v~~~~~L~~ 159 (346)
T TIGR03576 98 VVHYLPEKPAHPSIP-----RSCKLAGAE--YFE--S------DELSELKK-I--DGTSLVVITGSTMDLKVVSEEDLKR 159 (346)
T ss_pred EEECCCCCCCchhHH-----HHHHHcCCE--Eec--c------CCHHHHhh-C--cCceEEEEECCCCCCcccCHHHHHH
Confidence 998644444554432 123455543 221 1 24555433 2 357877764433 3333 57899
Q ss_pred HHHHHHHcCCEEEEeccccccccc-cCCccCCCC-CCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 271 MRQIADAVGALLMMDMAHISGLVA-ASVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 271 I~~ia~e~g~~livD~Ah~~Gl~~-~g~~~~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
|+++|+++|++|++|+||..|... .+.. .... ++|++++|++|+|+|++||++++++ ++.+.+...
T Consensus 160 i~~la~~~~~~livDEAy~~~~~~~~~~~-~~~~~~~divv~s~SKalaG~r~G~v~~~~------~li~~l~~~ 227 (346)
T TIGR03576 160 VIKQAKSKEAIVLVDDASGARVRRLYGQP-PALDLGADLVVTSTDKLMDGPRGGLLAGRK------ELVDKIKSV 227 (346)
T ss_pred HHHHHHHcCCEEEEECCccccccccCCCC-CHHHcCCcEEEeccchhccccceEEEEeCH------HHHHHHHHh
Confidence 999999999999999999877532 1211 1122 6799999999999999999999987 455555443
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=155.81 Aligned_cols=198 Identities=18% Similarity=0.186 Sum_probs=133.3
Q ss_pred ccCCCCcHHHHHHHhhhhh-cccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHH--
Q 018300 109 ASENFTSRAVMEAVGSCLT-NKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY-- 185 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~-~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~-- 185 (358)
.+++.++|.+.+++.+... ..| ..|.......| ..++....++++++++|.+. +.+..++|+.+....+
T Consensus 77 ~~~~~~~p~i~~~~~~~~~~~~~-tpYq~e~~sqG---~lel~~~~~~~la~l~G~~~----~~l~~~~GA~a~~~~l~~ 148 (481)
T PRK04366 77 SCTMKYNPKINEKVARLPGFAEL-HPLQPEETVQG---ALELMYELQEWLKEITGMDA----VTLQPAAGAHGELTGLLM 148 (481)
T ss_pred ccCCCCCHHHHHHHHhCcchhcC-CCCCChhhhhH---HHHHHHHHHHHHHHHhCCCc----eEEEeCcHHHHHHHHHHH
Confidence 4667789999999876411 111 11211101112 22455667889999999975 4677777876554432
Q ss_pred -H-HhccCCC----EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC
Q 018300 186 -T-AILKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (358)
Q Consensus 186 -~-all~pGD----~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~ 259 (358)
. .++++|| +|+++++.|..+.. .+...|..+ +.++++ +++.+|+++|++.+.. ++++|++..
T Consensus 149 ~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~--------~~~~~G~~v--v~v~~~-~~~~~D~e~L~~~i~~-~t~~V~v~~ 216 (481)
T PRK04366 149 IRAYHEARGDTKRTEVIVPDSAHGTNPA--------SAAMAGFKV--VEIPSN-EDGLVDLEALKAAVGE-DTAALMLTN 216 (481)
T ss_pred HHHHhhccCcCCCCEEEEcCCccHhHHH--------HHHHcCCEE--EEeecC-CCCCcCHHHHHhhccc-CCeEEEEeC
Confidence 2 3367787 99999887765532 234556544 444455 3578999999998864 678877765
Q ss_pred CC-CCCC-CCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCcCccCc------EEEEEEeCC
Q 018300 260 SA-YPRD-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR------GGMIFFKKD 329 (358)
Q Consensus 260 s~-~~~~-~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~------GG~I~~~~~ 329 (358)
++ +|.. .|+++|+++|+++|+++++|+||..++.. .. .+-+ |+|++++++||+|++|. +|++.++++
T Consensus 217 Pn~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g--~~-~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~ 292 (481)
T PRK04366 217 PNTLGLFERNILEIAEIVHEAGGLLYYDGANLNAILG--KA-RPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEE 292 (481)
T ss_pred CCCccccchHHHHHHHHHHHcCCEEEEEecChhhhcc--cC-CccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhh
Confidence 55 4544 48999999999999999999999866432 12 3334 89999999999987554 367877763
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-16 Score=156.61 Aligned_cols=157 Identities=23% Similarity=0.227 Sum_probs=118.1
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCc
Q 018300 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (358)
Q Consensus 143 ~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (358)
++....+|+ ++++++|.+. .+.+.||+.|+.+++.++++|||+|+++++.|++...... ..+...|.
T Consensus 62 ~p~~~~le~----~lA~l~g~~~-----al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~----~~~~~~G~ 128 (427)
T PRK05994 62 NPTNAVLEE----RVAALEGGTA-----ALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFG----HAFKSFGW 128 (427)
T ss_pred CccHHHHHH----HHHHHhCCCc-----EEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHH----HHHHhcCc
Confidence 344555655 4788999886 3678999999999999999999999999887776532100 01223454
Q ss_pred eEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccC
Q 018300 223 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300 (358)
Q Consensus 223 ~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~ 300 (358)
++..++. .|++++++.+.. ++|+|++..+++ +...|+++|.++|+++|+++++|++|+.++. ..
T Consensus 129 --~v~~vd~------~d~~~l~~ai~~-~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~-----~~ 194 (427)
T PRK05994 129 --QVRWADA------DDPASFERAITP-RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYL-----IR 194 (427)
T ss_pred --EEEEECC------CCHHHHHHhcCc-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCcccccc-----CC
Confidence 4444322 378999998864 789998876655 4578999999999999999999999986643 35
Q ss_pred CCC-CCcEEEEcCcCcCccCc---EEEEEE
Q 018300 301 PFK-YCDVVTTTTHKSLRGPR---GGMIFF 326 (358)
Q Consensus 301 pl~-gaDiv~~S~hK~L~Gp~---GG~I~~ 326 (358)
|++ ++|++++|+||+++|+. ||+++.
T Consensus 195 pl~~gaDivv~S~tK~lgg~~~~~gG~v~~ 224 (427)
T PRK05994 195 PIEHGADIVVHSLTKFLGGHGNSMGGIIVD 224 (427)
T ss_pred ccccCCcEEEEcCccccCCCCCcEEEEEEe
Confidence 666 99999999999998765 576664
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-16 Score=168.98 Aligned_cols=162 Identities=20% Similarity=0.176 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHcCCCCCCCcceEEeCCCHH---HHHHHHHHhccC-CC----EEEecCCCCCcccccccccchhccccCC
Q 018300 150 ETLCQKRALAAFNLDENKWGVNVQPLSGSP---ANFEVYTAILKP-HD----RIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 150 E~~~~~~la~lfg~~~~~~~v~V~~~SGt~---A~~~a~~all~p-GD----~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
-..++++++++||.+. +.+++++|++ |++.++.+++++ || +|++++.+|+.++.. ....|
T Consensus 570 ~~~~r~~la~i~g~~~----v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~--------a~~~G 637 (993)
T PLN02414 570 FEDLGDLLCEITGFDS----FSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPAS--------AAMCG 637 (993)
T ss_pred HHHHHHHHHHHhCCCe----EEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHH--------HHHCC
Confidence 3347999999999965 5666666654 888899999866 88 899999988877542 23456
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhc--CCeEEEEcC-CCCC-CCCCHHHHHHHHHHcCCEEEEeccccccccccCC
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGA-SAYP-RDFDYPRMRQIADAVGALLMMDMAHISGLVAASV 297 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~--~~klIi~~~-s~~~-~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~ 297 (358)
.++ +.++.+ +++.+|+++|+++++.+ ++++|++.+ ++.+ ...|+++|+++||++|+++++|+||..++..
T Consensus 638 ~~v--v~v~~d-~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~--- 711 (993)
T PLN02414 638 MKI--VVVGTD-AKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVG--- 711 (993)
T ss_pred CEE--EEeccC-CCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccC---
Confidence 544 444455 46899999999999752 467776654 4444 4667999999999999999999999887642
Q ss_pred ccCCCC-CCcEEEEcCcCcCccCcE------EEEEEeCC
Q 018300 298 VADPFK-YCDVVTTTTHKSLRGPRG------GMIFFKKD 329 (358)
Q Consensus 298 ~~~pl~-gaDiv~~S~hK~L~Gp~G------G~I~~~~~ 329 (358)
...|.+ |+|++++|.||+|++|.| |++.+++.
T Consensus 712 l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~ 750 (993)
T PLN02414 712 LTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH 750 (993)
T ss_pred cCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchh
Confidence 224455 999999999999987763 88887774
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=158.29 Aligned_cols=164 Identities=21% Similarity=0.263 Sum_probs=116.2
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~ 231 (358)
+++.++++||++.+ .+.++||+ +|.+++.++++|||+|++.. ++|.|.. .++.+.|....+++..
T Consensus 71 Ae~~aA~~fGAd~t-----~flvnGsT~g~~a~i~a~~~~gd~VLv~R---N~HkSv~-----~alil~ga~Pvyi~p~- 136 (417)
T PF01276_consen 71 AEELAARAFGADKT-----FFLVNGSTSGNQAMIMALCRPGDKVLVDR---NCHKSVY-----NALILSGAIPVYIPPE- 136 (417)
T ss_dssp HHHHHHHHHTESEE-----EEESSHHHHHHHHHHHHHTTTTCEEEEET---T--HHHH-----HHHHHHTEEEEEEEEE-
T ss_pred HHHHHHHhcCCCeE-----EEEecCchHHHHHHHHHhcCCCCEEEEcC---CcHHHHH-----HHHHHcCCeEEEecCC-
Confidence 56678999999984 45677775 99999999999999999975 5666532 2456677644444322
Q ss_pred cCCCC---CCCH-----HHHHHHhhhcC-Ce---EE-EEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCc
Q 018300 232 DESTG---LVDY-----DMLEKTAILFR-PK---LI-IAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 298 (358)
Q Consensus 232 ~~~~~---~iD~-----d~le~~i~~~~-~k---lI-i~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~ 298 (358)
+++.+ .+++ +.|++.++++. .| ++ +++++.+|...|+++|+++|+++|++|++|+||...+.+....
T Consensus 137 ~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp 216 (417)
T PF01276_consen 137 DNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLP 216 (417)
T ss_dssp E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGG
T ss_pred ccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCc
Confidence 32333 4677 89999887642 23 35 4455667999999999999999999999999999777665333
Q ss_pred cCCCC-CCc-------EEEEcCcCcCccC-cEEEEEEeCCC
Q 018300 299 ADPFK-YCD-------VVTTTTHKSLRGP-RGGMIFFKKDP 330 (358)
Q Consensus 299 ~~pl~-gaD-------iv~~S~hK~L~Gp-~GG~I~~~~~~ 330 (358)
.+.+. |+| +++.|+||+|++. ++++|..+.+.
T Consensus 217 ~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~ 257 (417)
T PF01276_consen 217 RSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDR 257 (417)
T ss_dssp TTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCC
T ss_pred cchhhccCccccccceeeeechhhcccccccceEEEecCCC
Confidence 35556 999 9999999999987 57899988874
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.3e-16 Score=151.21 Aligned_cols=197 Identities=25% Similarity=0.296 Sum_probs=147.0
Q ss_pred cccccCCCC----cHHHHHHHhhhhhcccCCCCCCCcCCCCcH-HHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHH
Q 018300 106 ELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGNE-YIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (358)
Q Consensus 106 ~lias~n~~----s~~V~~al~~~l~~~~~~G~pg~r~~~G~~-~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A 180 (358)
....|++|. +|.++++....+. +|.-|.+++|...|+. ...++|+ .+++++|.+.+ +.++||..|
T Consensus 42 ~nf~SNdYLGLa~~~~~~~a~~~~~~-~~g~g~~gsR~i~G~~~~h~~LE~----~lA~f~g~e~a-----l~f~SGy~A 111 (388)
T COG0156 42 LNFCSNDYLGLASHPELIEAAKAAIR-RYGVGAGGSRLISGTSDLHVELEE----ELADFLGAEAA-----LLFSSGFVA 111 (388)
T ss_pred EeeeccCcccccCCHHHHHHHHHHHH-HhCCCCCCcCcccCCcHHHHHHHH----HHHHHhCCCcE-----EEEcccchh
Confidence 334889986 8889999987765 4555777888666764 4445665 48999999973 778999999
Q ss_pred HHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc-----CCeEE
Q 018300 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLI 255 (358)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~-----~~klI 255 (358)
|..++.++.++||.|+...+.|-+- . ..+.+++. +.+.|. ..|+++||+++++. +.++|
T Consensus 112 N~~~i~~l~~~~dli~~D~lnHASi------i--dG~rls~a--~~~~f~------HnD~~~Le~~l~~~~~~~~~~~~I 175 (388)
T COG0156 112 NLGLLSALLKKGDLIFSDELNHASI------I--DGIRLSRA--EVRRFK------HNDLDHLEALLEEARENGARRKLI 175 (388)
T ss_pred HHHHHHHhcCCCcEEEEechhhhhH------H--HHHHhCCC--cEEEec------CCCHHHHHHHHHhhhccCCCceEE
Confidence 9999999999999999987754431 1 23445555 334432 46889999998652 24677
Q ss_pred EEc--CCCCCCCCCHHHHHHHHHHcCCEEEEecccccccccc-CC--cc-CCCC--CCcEEEEcCcCcCccCcEEEEEEe
Q 018300 256 IAG--ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV--VA-DPFK--YCDVVTTTTHKSLRGPRGGMIFFK 327 (358)
Q Consensus 256 i~~--~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~--~~-~pl~--gaDiv~~S~hK~L~Gp~GG~I~~~ 327 (358)
+++ +|..|...|+++|++++++||++|++|.||+.|+.+. |. .. .-+. ..|++++|+.|.|+ --||++.++
T Consensus 176 vtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlG-s~Gg~v~g~ 254 (388)
T COG0156 176 VTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALG-SSGGYIAGS 254 (388)
T ss_pred EEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhc-ccCceeeCc
Confidence 765 3556778999999999999999999999999998863 21 10 1122 45899999999986 578999998
Q ss_pred CC
Q 018300 328 KD 329 (358)
Q Consensus 328 ~~ 329 (358)
..
T Consensus 255 ~~ 256 (388)
T COG0156 255 AA 256 (388)
T ss_pred HH
Confidence 74
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.8e-15 Score=144.53 Aligned_cols=198 Identities=17% Similarity=0.139 Sum_probs=132.4
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKP 191 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~p 191 (358)
.+++.+.+++.+.+.+....+|+. ..|.+ ++++.+++++.+.+|.+.. ..-+|.+++|+ +|+..++.++++|
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~lr~~ia~~~~~~~~~~~~-~~~~vi~t~G~~~~l~~~~~~~~~~ 114 (383)
T TIGR03540 42 PTPKHIVEALCKAAENPENHRYPS---YEGML---AYRQAVADWYKRRFGVELD-PETEVLSLIGSKEGIAHIPLAFVNP 114 (383)
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCC---CCCCH---HHHHHHHHHHHHhhCCCCC-CCCeEEECCCcHHHHHHHHHHhCCC
Confidence 457889999887654332234443 23432 5666677777777776421 10146666664 6999999999999
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC-CCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC-
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD- 267 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d- 267 (358)
||+|++.++.|..+.. .....|. +++++++++++ ..+|++++++.+.. ++|+|++..++|| ...+
T Consensus 115 gd~vlv~~P~y~~~~~--------~~~~~G~--~v~~v~~~~~~g~~~d~~~l~~~~~~-~~~~v~i~~P~NPtG~~~~~ 183 (383)
T TIGR03540 115 GDIVLVPDPGYPVYRI--------GTLFAGG--EPYEMPLKEENGFLPDFDAIPEDIAK-KAKLMFINYPNNPTGAVAPL 183 (383)
T ss_pred CCEEEEeCCCCcchHH--------HHHhcCC--EEEEEecCcccCCccCHHHHHhhccc-cceEEEEeCCCCCcCccCCH
Confidence 9999999987665422 2335565 44555566443 46899999988754 7898888766665 4555
Q ss_pred --HHHHHHHHHHcCCEEEEeccccccccccCC-ccC--CCCC---CcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 268 --YPRMRQIADAVGALLMMDMAHISGLVAASV-VAD--PFKY---CDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 268 --l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~~--pl~g---aDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
+++|.++|+++|+++++|+++. .+.+.+. .++ .+++ -.+++.|++|+| +|.|-|+++.+++
T Consensus 184 ~~~~~i~~~a~~~~~~ii~De~y~-~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~~ 254 (383)
T TIGR03540 184 KFFKELVEFAKEYNIIVCHDNAYS-EITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNAD 254 (383)
T ss_pred HHHHHHHHHHHHcCEEEEEecchh-hhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCCHH
Confidence 6888999999999999999976 3333321 111 1222 237788999987 4677899998763
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-15 Score=146.36 Aligned_cols=195 Identities=23% Similarity=0.234 Sum_probs=131.9
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCc-HHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~-~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pG 192 (358)
.++.+++++...+. +|..++++.++..|. +..++ .++.++++++.+. .+++++|+.++..++.++++||
T Consensus 31 ~~~~v~~a~~~~~~-~~~~~~~~~~~~~g~~~~~~~----l~~~la~~~~~~~-----~i~~~~G~~~~~~~l~~~~~~g 100 (360)
T TIGR00858 31 SHPEVIQAAQQGAE-QYGAGSTASRLVSGNSPLHEE----LEEELAEWKGTEA-----ALLFSSGYLANVGVISALVGKG 100 (360)
T ss_pred CCHHHHHHHHHHHH-hcCCCCCCcCcccCCcHHHHH----HHHHHHHHhCCCC-----EEEECchHHHHHHHHHHhCCCC
Confidence 45899999987764 444454443333333 32233 4566888888643 4778899998888888889999
Q ss_pred CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc---CCeEEEEcCCC--CCCCCC
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIAGASA--YPRDFD 267 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~---~~klIi~~~s~--~~~~~d 267 (358)
|+|++.++.|.++.. .....|..+ ..++ .+|++++++.++.. ++++|+++... .|...|
T Consensus 101 d~v~~~~~~~~~~~~--------~~~~~g~~~--~~~~------~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~ 164 (360)
T TIGR00858 101 DLILSDALNHASLID--------GCRLSGARV--RRYR------HNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAP 164 (360)
T ss_pred CEEEEEccccHHHHH--------HHHhcCCce--EEec------CCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcC
Confidence 999998876554321 223445433 2221 36889999888653 46777776544 345789
Q ss_pred HHHHHHHHHHcCCEEEEeccccccccccC-C--cc-CCCC--CCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHHh
Q 018300 268 YPRMRQIADAVGALLMMDMAHISGLVAAS-V--VA-DPFK--YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 268 l~~I~~ia~e~g~~livD~Ah~~Gl~~~g-~--~~-~pl~--gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
+++|.++|+++|+++++|++|+.|..... . .+ ..++ +.|+++.|+||+|+ ++||++++++ ++.+++.
T Consensus 165 ~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~-~~gG~~~~~~------~~~~~~~ 237 (360)
T TIGR00858 165 LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALG-SYGAYVAGSQ------ALIDYLI 237 (360)
T ss_pred HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhh-ccCcEEEcCH------HHHHHHH
Confidence 99999999999999999999987644211 1 11 1122 67899999999875 5789988876 4555554
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=152.96 Aligned_cols=187 Identities=17% Similarity=0.171 Sum_probs=128.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhcccc
Q 018300 140 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSG 219 (358)
Q Consensus 140 ~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~ 219 (358)
|+|.+.+.+||+. ++++||.++ .|.++|||.|++.++...++|||+| +.. .|+... ...+..
T Consensus 74 Yagd~s~~~LE~~----vAe~lG~e~-----aV~v~sGTaAl~ll~~l~v~pGd~V--p~n---~~f~Tt----~ahI~~ 135 (460)
T PRK13237 74 YAGSRNFYHLEET----VQEYYGFKH-----VVPTHQGRGAENLLSRIAIKPGQYV--PGN---MYFTTT----RYHQEL 135 (460)
T ss_pred hcCCCcHHHHHHH----HHHHHCCCe-----EEEeCCHHHHHHHHHHhCCCCcCEE--CCc---cchHhh----HHHHHh
Confidence 4556666778775 678999987 3677899999998766568999976 221 222211 011334
Q ss_pred CCceEEEEece---------ecCCCCCCCHHHHHHHhhhcCC------eEEEEcCCCCCCCC---CHHHHHHHHHHcCCE
Q 018300 220 TSIYFESMPYR---------LDESTGLVDYDMLEKTAILFRP------KLIIAGASAYPRDF---DYPRMRQIADAVGAL 281 (358)
Q Consensus 220 ~g~~~~~~~~~---------~~~~~~~iD~d~le~~i~~~~~------klIi~~~s~~~~~~---dl~~I~~ia~e~g~~ 281 (358)
.|.. ++.+. .++.++.+|+++|++.+++..+ ++++......|..+ ++++|.++|+++|++
T Consensus 136 ~Ga~--fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~ 213 (460)
T PRK13237 136 NGGI--FVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIK 213 (460)
T ss_pred CCcE--EEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCE
Confidence 4542 22211 1355789999999999875322 22332222224544 789999999999999
Q ss_pred EEEecccccc---ccc---cCCccCC--------CCCCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHHhhc--cC
Q 018300 282 LMMDMAHISG---LVA---ASVVADP--------FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNA--VF 345 (358)
Q Consensus 282 livD~Ah~~G---l~~---~g~~~~p--------l~gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~~~--~f 345 (358)
|+.|+||++| ++- .+....+ +.++|.+++|+||.+.++.||+|+++++ ++.++++.. .|
T Consensus 214 Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~GG~i~t~D~-----eL~~~~r~~~~~~ 288 (460)
T PRK13237 214 VFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIGGFLAMNDE-----ELFDEAKELVVVY 288 (460)
T ss_pred EEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCceEEEECCH-----HHHHHHHHhcccc
Confidence 9999999998 330 1111122 2379999999999999999999999998 899999887 66
Q ss_pred Cccccc
Q 018300 346 PGLQVG 351 (358)
Q Consensus 346 ~g~q~~ 351 (358)
+|+..-
T Consensus 289 eG~~ty 294 (460)
T PRK13237 289 EGMPSY 294 (460)
T ss_pred CCCcCC
Confidence 776543
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-15 Score=146.13 Aligned_cols=230 Identities=13% Similarity=0.092 Sum_probs=148.4
Q ss_pred cccccccChHHHHHHHHHHHHhhhcccccccC--CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHH
Q 018300 80 DYSLGEADPEVCEIITKEKERQFKSLELIASE--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (358)
Q Consensus 80 ~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~--n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~l 157 (358)
++++....+.++.++.....+....++|-.++ ..+++.+.+++...+.+....+|+. ..|.. ++.+.+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~Y~~---~~G~~---~lr~~~~~~l 78 (389)
T PRK05957 5 TSRMDAVQSPIIPVVGQLIRENPGTISLGQGVVSYPPPPEAIEALNNFLANPENHKYQA---VQGIP---PLLEAITQKL 78 (389)
T ss_pred hHHHHhcCCcHHHHHHHHHHhCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC---CCCCH---HHHHHHHHHH
Confidence 34555556666655554444333335554333 3478889999887664332222322 23333 4556677788
Q ss_pred HHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCC
Q 018300 158 LAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 236 (358)
Q Consensus 158 a~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 236 (358)
++.+|.+.+.. .+|.+++|+ .|+..++.++++|||+|+++++.|..+.. .....|. +++.++.+ +++
T Consensus 79 ~~~~g~~~~~~-~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~-~~~ 146 (389)
T PRK05957 79 QQDNGIELNNE-QAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEM--------AITMAGC--QPILVPTD-DNY 146 (389)
T ss_pred HHHhCCCCCCC-CeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHH--------HHHhcCC--EEEEeecC-CCC
Confidence 88889742101 246666665 58888888889999999999886655432 2234565 44455555 345
Q ss_pred CCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCC-ccCC--C-C--CC
Q 018300 237 LVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP--F-K--YC 305 (358)
Q Consensus 237 ~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~~p--l-~--ga 305 (358)
.+|++++++.++. ++|+|++..++|| ...+ +++|+++|+++|+++++|+++. .+.+.+. ...+ + + .-
T Consensus 147 ~~d~~~l~~~i~~-~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~-~~~~~~~~~~~~~~~~~~~~~ 224 (389)
T PRK05957 147 QLQPEAIEQAITP-KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYE-YFTYDGVKHFSPGSIPGSGNH 224 (389)
T ss_pred CcCHHHHHHhcCc-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccch-hccCCCCCccChhhCCCccCc
Confidence 7999999998864 7898887666654 4555 8889999999999999999976 4443321 1111 1 2 12
Q ss_pred cEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 306 DVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 306 Div~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
-+++.|++|.+ +|.|-|+++++++
T Consensus 225 ~i~~~S~SK~~g~~GlRiG~~~~~~~ 250 (389)
T PRK05957 225 TISLYSLSKAYGFASWRIGYMVIPIH 250 (389)
T ss_pred EEEEecchhhccCccceeEEEecCHH
Confidence 37789999997 5667899998763
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-15 Score=146.46 Aligned_cols=204 Identities=15% Similarity=0.076 Sum_probs=135.0
Q ss_pred hcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceEEeC-CC
Q 018300 103 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPL-SG 177 (358)
Q Consensus 103 ~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg--~~~~~~~v~V~~~-SG 177 (358)
..++|-..++ .+++.+++++...+.+.. .+|+. ..|.+ ++++.+.+++.+.+| ++++ +|.++ ++
T Consensus 25 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~Y~~---~~G~~---~lr~~la~~~~~~~~~~~~~~----~i~~t~g~ 93 (382)
T PRK06108 25 GVLPLWFGESDLPTPDFIRDAAAAALADGE-TFYTH---NLGIP---ELREALARYVSRLHGVATPPE----RIAVTSSG 93 (382)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCCH---HHHHHHHHHHHHHhCCCcCcc----eEEEeCCh
Confidence 3455554443 458889999887665421 22332 12333 566777777888888 5543 34444 55
Q ss_pred HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC--CCCCCCHHHHHHHhhhcCCeEE
Q 018300 178 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE--STGLVDYDMLEKTAILFRPKLI 255 (358)
Q Consensus 178 t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~iD~d~le~~i~~~~~klI 255 (358)
++|+..++.++++|||+|++.++.|..+.. .+...|..+ ++++.+. .++.+|++++++.+.. ++++|
T Consensus 94 ~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~~~--~~v~~~~~~~~~~~d~~~l~~~~~~-~~~~i 162 (382)
T PRK06108 94 VQALMLAAQALVGPGDEVVAVTPLWPNLVA--------APKILGARV--VCVPLDFGGGGWTLDLDRLLAAITP-RTRAL 162 (382)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccchHH--------HHHHCCCEE--EEeeCCCCCCCccCCHHHHHHhcCc-cceEE
Confidence 679999999999999999999887654421 234456544 4444542 2346999999998754 68888
Q ss_pred EEcCCCCCC--CC---CHHHHHHHHHHcCCEEEEecccccccccc-C-CccCCCC-----CCcEEEEcCcCcC--ccCcE
Q 018300 256 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAA-S-VVADPFK-----YCDVVTTTTHKSL--RGPRG 321 (358)
Q Consensus 256 i~~~s~~~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~-g-~~~~pl~-----gaDiv~~S~hK~L--~Gp~G 321 (358)
++..+++|+ .. ++++|.++|+++|+++++|++|.. +... + ..+..++ ...+++.|++|++ +|.|-
T Consensus 163 ~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri 241 (382)
T PRK06108 163 FINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYER-LYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRL 241 (382)
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhh-hccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccce
Confidence 776666553 44 478899999999999999999773 3332 1 1221111 2347889999986 56778
Q ss_pred EEEEEeCC
Q 018300 322 GMIFFKKD 329 (358)
Q Consensus 322 G~I~~~~~ 329 (358)
|+++++++
T Consensus 242 G~~~~~~~ 249 (382)
T PRK06108 242 GWLVAPPA 249 (382)
T ss_pred eeeeCCHH
Confidence 99999763
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.3e-15 Score=144.60 Aligned_cols=197 Identities=16% Similarity=0.069 Sum_probs=130.5
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCC-HHHHHHHHHHhccC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKP 191 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SG-t~A~~~a~~all~p 191 (358)
.+++.+.+++.+.+.+.....|+. ..|.+ ++++.+.+++.+.+|.... . -+|++++| ++|+..++.++++|
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~lr~~ia~~~~~~~g~~~~-~-~~i~~t~G~~~al~~~~~~l~~~ 113 (386)
T PRK07550 42 PPPPELLRALAEAAADPAAHLYGP---VEGLP---ELREAYAAHYSRLYGAAIS-P-EQVHITSGCNQAFWAAMVTLAGA 113 (386)
T ss_pred CCCHHHHHHHHHHHhCcCCcCCCC---CCCCH---HHHHHHHHHHHHHhCCCCC-c-ceEEEecCcHHHHHHHHHHhcCC
Confidence 347788888877654322122321 22443 6777777778777775431 1 24666766 56999999999999
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCC-
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD- 267 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~d- 267 (358)
||+|++.++.+.++.. .+...|. ++++++.+++ +..+|.+++++.++. ++++|++..+++|+ ..+
T Consensus 114 gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~P~NPtG~~~~~ 182 (386)
T PRK07550 114 GDEVILPLPWYFNHKM--------WLDMLGI--RPVYLPCDEGPGLLPDPAAAEALITP-RTRAIALVTPNNPTGVVYPP 182 (386)
T ss_pred CCEEEEcCCCCcchHH--------HHHhcCC--EEEEEecCCCcCCCCCHHHHHHHhcc-cCcEEEEeCCCCCCCcccCH
Confidence 9999999887655422 2234555 5556666643 446899999998865 67877665556553 444
Q ss_pred --HHHHHHHHHHcCCEEEEeccccccccccCCcc-CCCC----CC-cEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 268 --YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPFK----YC-DVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 268 --l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~-~pl~----ga-Div~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
+++|.++|+++|+++++|+++. ++...+..+ ..+. +. .+++.|++|++ +|.|.|+++++++
T Consensus 183 ~~~~~i~~~~~~~~~~iI~Dd~y~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~ 253 (386)
T PRK07550 183 ELLHELYDLARRHGIALILDETYR-DFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPA 253 (386)
T ss_pred HHHHHHHHHHHHcCeEEEEeccch-hhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHH
Confidence 7899999999999999999975 333222111 1111 11 36689999997 4778999999764
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-15 Score=146.76 Aligned_cols=192 Identities=18% Similarity=0.136 Sum_probs=125.3
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc-C
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-P 191 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~-p 191 (358)
++++.+++++...... . ...|| + +..+++|+ .+++++|.+. .+.+++|+.++..++.++.+ |
T Consensus 17 ~~~~~~~~a~~~~~~~-----~-~~~~~-~-~~~~~l~~----~la~~~~~~~-----~~~~~~Gs~a~~~~l~~~~~~~ 79 (353)
T PLN02721 17 KPTDAMRAAMANAEVD-----D-DVLGY-D-PTALRLEE----EMAKIFGKEA-----ALFVPSGTMGNLISVLVHCDVR 79 (353)
T ss_pred CCCHHHHHHHHhccCC-----C-cccCC-C-HHHHHHHH----HHHHHhCCce-----eEEecCccHHHHHHHHHHccCC
Confidence 5688888888642011 1 11122 2 22445554 5788999875 25667899998888888877 9
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh------cCCeEEEEcC-CCC--
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL------FRPKLIIAGA-SAY-- 262 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~------~~~klIi~~~-s~~-- 262 (358)
||+|++.++.|-+....+ ......|. ++..++.+ +++.+|+|++++.++. .++|+|++.. +++
T Consensus 80 gd~Vl~~~~~~~~~~~~~-----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~ 151 (353)
T PLN02721 80 GSEVILGDNSHIHLYENG-----GISTLGGV--HPRTVKNN-EDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCG 151 (353)
T ss_pred CCeEEEcCccceehhccc-----chhhhcCc--eeEecCCC-cCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccC
Confidence 999999887542111000 01234454 44445555 3567999999998863 2678888744 344
Q ss_pred CCCCC---HHHHHHHHHHcCCEEEEeccccccccc-cCCccCCCC-CCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 263 PRDFD---YPRMRQIADAVGALLMMDMAHISGLVA-ASVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 263 ~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~-~g~~~~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
|...| +++|.++|+++|+++++|++|..+... .+..+..+. ++|.++.|+||+|++|.|++++.+++
T Consensus 152 G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~ 223 (353)
T PLN02721 152 GRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGSKS 223 (353)
T ss_pred CccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCceeeEEecCHH
Confidence 34455 789999999999999999998755321 122112222 78999999999999887776666653
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.3e-15 Score=145.03 Aligned_cols=196 Identities=17% Similarity=0.137 Sum_probs=126.8
Q ss_pred CCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc-
Q 018300 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL- 189 (358)
Q Consensus 111 ~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all- 189 (358)
...+.+.+++++...+... .|.++ .+.+.. ++++.+++++++++|+++++ .+.+.+|+.++..++.++.
T Consensus 29 ~~~~~~~~~~a~~~~~~~~--~~~~~--~~~~~~---~~~~~~~~~la~~~g~~~~~---~~~~~g~~~~~~~~~~~~~~ 98 (373)
T TIGR03812 29 CTNPHPIAVKAYDMFIETN--LGDPG--LFPGTK---KIEEEVVGSLGNLLHLPDAY---GYIVSGGTEANIQAVRAAKN 98 (373)
T ss_pred eCCchHHHHHHHHHHhhcC--CCCcc--cCccHH---HHHHHHHHHHHHHhCCCCCC---eEEeccHHHHHHHHHHHHHH
Confidence 3346666788876654332 34443 234432 45566888999999998642 3556677788888776653
Q ss_pred -----cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCC-eEEEEcCC-CC
Q 018300 190 -----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRP-KLIIAGAS-AY 262 (358)
Q Consensus 190 -----~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~-klIi~~~s-~~ 262 (358)
++||+|+++++.|.+ +. +.+...|..+. .++++ +++.+|++++++.+++ ++ +++++.++ .+
T Consensus 99 ~~~~~~~g~~vl~~~~~h~~---~~-----~~~~~~G~~~~--~v~~~-~~~~~d~~~l~~~l~~-~~~~vv~~~~~~~t 166 (373)
T TIGR03812 99 LAREEKRTPNIIVPESAHFS---FE-----KAAEMLGLELR--YAPLD-EDYTVDVKDVEDLIDD-NTIGIVGIAGTTEL 166 (373)
T ss_pred HHhccCCCcEEEECCcchHH---HH-----HHHHHcCCeEE--EEeeC-CCCCcCHHHHHHHHhh-CcEEEEEECCCCCC
Confidence 478999998764433 21 12345566444 44455 3578999999998865 44 45555432 35
Q ss_pred CCCCCHHHHHHHHHHcCCEEEEeccccccccc---cCC--ccCCCC--CCcEEEEcCcCcCccC-cEE-EEEEeC
Q 018300 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVA---ASV--VADPFK--YCDVVTTTTHKSLRGP-RGG-MIFFKK 328 (358)
Q Consensus 263 ~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~---~g~--~~~pl~--gaDiv~~S~hK~L~Gp-~GG-~I~~~~ 328 (358)
|...|+++|.++|+++|+++++|+||+.+... .+. ....+. ++|.+++|+||++.+| ++| +++.++
T Consensus 167 G~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~ 241 (373)
T TIGR03812 167 GQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSK 241 (373)
T ss_pred CccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCH
Confidence 77889999999999999999999999855321 111 111222 7899999999986554 334 444444
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-15 Score=146.75 Aligned_cols=196 Identities=21% Similarity=0.225 Sum_probs=130.2
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD 193 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD 193 (358)
.+|.|++++...+.. |..+++..++..|.. .+.+..++++++++|.+. .+.+++|+.++..++.++++|||
T Consensus 54 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~---~~~~~l~~~la~~~~~~~-----~i~~~~g~~~~~~~l~~~~~~gd 124 (385)
T PRK05958 54 RHPRLIAAAQQAARR-YGAGSGGSRLVTGNS---PAHEALEEELAEWFGAER-----ALLFSSGYAANLAVLTALAGKGD 124 (385)
T ss_pred CCHHHHHHHHHHHHh-cCCCCCCcCcccCCc---HHHHHHHHHHHHHhCCCc-----EEEECcHHHHHHHHHHHhCCCCC
Confidence 578999999887753 433333333333322 223335667888998532 46778899988888888899999
Q ss_pred EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc--CCeEEEEcCCC--CCCCCCHH
Q 018300 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASA--YPRDFDYP 269 (358)
Q Consensus 194 ~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~--~~klIi~~~s~--~~~~~dl~ 269 (358)
+|++.++.|+++.. .....|..+. .++ ..|++++++.++.. ++.+++++... .|...+++
T Consensus 125 ~V~~~~~~~~~~~~--------~~~~~g~~~~--~~~------~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~ 188 (385)
T PRK05958 125 LIVSDKLNHASLID--------GARLSRARVR--RYP------HNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLA 188 (385)
T ss_pred EEEEeCccCHHHHH--------HHHhcCCceE--EeC------CCCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHH
Confidence 99998877665432 2234454333 322 24889999988653 34566665443 45578999
Q ss_pred HHHHHHHHcCCEEEEeccccccccc-cCC-ccC--CCC-C-CcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHHh
Q 018300 270 RMRQIADAVGALLMMDMAHISGLVA-ASV-VAD--PFK-Y-CDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 270 ~I~~ia~e~g~~livD~Ah~~Gl~~-~g~-~~~--pl~-g-aDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
+|.++|+++|+++++|++|+.|... .+. ... .++ . .++++.|+||+| |+.||+++.++ ++.+.+.
T Consensus 189 ~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~Gg~~~~~~------~~~~~~~ 259 (385)
T PRK05958 189 ELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKAL-GSSGAAVLGSE------TLIDYLI 259 (385)
T ss_pred HHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhc-ccCCcEEEcCH------HHHHHHH
Confidence 9999999999999999999877543 121 111 233 2 348889999998 56788888775 4555554
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.3e-16 Score=154.62 Aligned_cols=157 Identities=21% Similarity=0.149 Sum_probs=115.5
Q ss_pred CCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccc
Q 018300 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (358)
Q Consensus 134 ~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (358)
+.++|+ +++..+++|+ ++++++|.+. .+.++||+.|+..++.+++++||+|+++++.|++......
T Consensus 49 ~~ysr~--~~p~~~~le~----~lA~l~g~~~-----~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~--- 114 (418)
T TIGR01326 49 NIYSRL--MNPTTDVLEQ----RIAALEGGVA-----ALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFK--- 114 (418)
T ss_pred ceeECC--CChhHHHHHH----HHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHH---
Confidence 334444 4455555554 5889999865 4778899999999999999999999999877766432110
Q ss_pred hhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEecccccc
Q 018300 214 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISG 291 (358)
Q Consensus 214 ~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~G 291 (358)
..+...|. ++..++. .|++++++.+.. ++++|+++.+++| ...|+++|.++|+++|+++++|++|+.+
T Consensus 115 -~~~~~~G~--~v~~v~~------~d~~~l~~~l~~-~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~ 184 (418)
T TIGR01326 115 -HTLKRLGI--EVRFVDP------DDPEEFEKAIDE-NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATP 184 (418)
T ss_pred -HHHHHcCc--EEEEECC------CCHHHHHHhcCc-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchh
Confidence 11233454 4444332 288999998864 7899988766665 5789999999999999999999998765
Q ss_pred ccccCCccCCCC-CCcEEEEcCcCcCccC
Q 018300 292 LVAASVVADPFK-YCDVVTTTTHKSLRGP 319 (358)
Q Consensus 292 l~~~g~~~~pl~-gaDiv~~S~hK~L~Gp 319 (358)
.. ..+++ ++|++++|++|+++|+
T Consensus 185 ~~-----~~~l~~g~Divv~S~sK~l~g~ 208 (418)
T TIGR01326 185 YL-----CRPIDHGADIVVHSATKYIGGH 208 (418)
T ss_pred hc-----CCchhcCCeEEEECccccccCC
Confidence 32 34566 8999999999999764
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=144.62 Aligned_cols=197 Identities=15% Similarity=0.193 Sum_probs=129.2
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCC-HHHHHHHHHHhccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SG-t~A~~~a~~all~pG 192 (358)
.++.+++++...+.+....+|+. ..|.+ ++++.+.+++.+.+|.+-+ ..-.+++++| ++|+..++.++++||
T Consensus 49 ~p~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~lr~aia~~~~~~~~~~~~-~~~~i~vt~G~~~al~~~~~~~~~~g 121 (394)
T PRK05942 49 APQPVIEAAIAALADPQNHGYPP---FEGTA---SFRQAITDWYHRRYGVELD-PDSEALPLLGSKEGLTHLALAYVNPG 121 (394)
T ss_pred CCHHHHHHHHHHHhCCCCccCCC---CCCCH---HHHHHHHHHHHHHHCCCcC-CCCeEEEccChHHHHHHHHHHhCCCC
Confidence 46667777766554322233443 12333 5666666777766675321 1013555665 569999999999999
Q ss_pred CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC-CCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC--
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD-- 267 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d-- 267 (358)
|+|++++|.|.++.. .+...|. +++++++++++ ..+|++++++.+.. ++|+|++..+++| ...+
T Consensus 122 d~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~P~NPtG~~~s~~ 190 (394)
T PRK05942 122 DVVLVPSPAYPAHFR--------GPLIAGA--QIYPIILKPENDWLIDLSSIPEEVAQ-QAKILYFNYPSNPTTATAPRE 190 (394)
T ss_pred CEEEEcCCCCcchHH--------HHHHcCC--EEEEeecCCccCCccCHHHHHHhccc-cceEEEEcCCCCCCCCcCCHH
Confidence 999999988766532 1234555 45555566433 46999999988754 7899988766655 4555
Q ss_pred -HHHHHHHHHHcCCEEEEeccccccccccCCccCC---CC---CCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 268 -YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---FK---YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 268 -l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p---l~---gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
+++|.++|+++|+++++|+++. .+...+..+.+ ++ ...+++.|++|.+ +|.|.|+++++++
T Consensus 191 ~~~~i~~~a~~~~~~iI~De~y~-~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~ 260 (394)
T PRK05942 191 FFEEIVAFARKYEIMLVHDLCYA-ELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRH 260 (394)
T ss_pred HHHHHHHHHHHcCeEEEEeccch-hhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecCHH
Confidence 7788999999999999999976 33322221111 22 2347789999976 5667899998763
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=150.49 Aligned_cols=168 Identities=18% Similarity=0.208 Sum_probs=117.6
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
+++..+++|+ ++++++|.+. .+.++||+.|+..++.++++|||+|++.++.+++.+.... ..+...|
T Consensus 43 ~~p~~~~L~~----~lA~l~g~~~-----~v~~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~----~~~~~~G 109 (376)
T PRK06460 43 ANPTVLELTK----KIVELENAEM-----GVAFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFT----DYLKNWG 109 (376)
T ss_pred CCccHHHHHH----HHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHH----HHHHhhC
Confidence 3444555554 5889999976 3567899999999999999999999998765554322110 1223446
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
..+ ..++.+ |.+.+++.+. .++|+|++..+++| ..+|+++|.++|+++|+++++|++|+.+.. .
T Consensus 110 ~~v--~~~~~~------~~~~l~~~~~-~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~-----~ 175 (376)
T PRK06460 110 VNV--DASNPG------SDNIIEKAKS-KRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPIN-----Q 175 (376)
T ss_pred cEE--EEECCC------CHHHHHHhcC-CCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcccc-----C
Confidence 543 333332 2244555433 47899988777664 589999999999999999999999875421 1
Q ss_pred CCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhh
Q 018300 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 300 ~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
.+++ ++|+++.|+||+++|++ +|++++++ ++.+++..
T Consensus 176 ~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~------~l~~~l~~ 216 (376)
T PRK06460 176 KPLELGADIVVHSASKFLAGHNDVIAGLAAGYG------KLLNVIDQ 216 (376)
T ss_pred ChhhcCCCEEEeecceeccCCCCceEEEEecCH------HHHHHHHH
Confidence 3444 78999999999998875 79888776 45555543
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.3e-15 Score=145.46 Aligned_cols=228 Identities=18% Similarity=0.185 Sum_probs=145.5
Q ss_pred ccccccChHHHHHHHHHHHHh----hhcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQ----FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQ 154 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~----~~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~ 154 (358)
+++....+.++..+.+..... ..-++|-..++ .+++.+.+++...+......+|+. ..|.+ ++++.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~lr~aia 78 (388)
T PRK07366 5 QRLQPLQSNVFADMDRAKAQARAAGKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLL---FHGTL---DFREAAA 78 (388)
T ss_pred hhhhcCCccHHHHHHHHHHHHHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcccCCCCC---CCCCH---HHHHHHH
Confidence 344455555555444433321 23355544443 458889999887654332223432 12333 5666666
Q ss_pred HHHHHHcCC--CCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee
Q 018300 155 KRALAAFNL--DENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (358)
Q Consensus 155 ~~la~lfg~--~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~ 231 (358)
+++.+.+|. +++ -+|++++|+ +|+..++.++++|||+|++.+|.|.++.. .+...|. +++++++
T Consensus 79 ~~~~~~~g~~~~~~---~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~ 145 (388)
T PRK07366 79 QWYEQRFGLAVDPE---TEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAG--------GVYLAGG--QIYPMPL 145 (388)
T ss_pred HHHHHhhCCcCCCc---CeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHhcCC--EEEEEEC
Confidence 667666664 332 147777776 49999999999999999999987766532 2345565 4455556
Q ss_pred cCCC-CCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCC--ccCCC-
Q 018300 232 DEST-GLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV--VADPF- 302 (358)
Q Consensus 232 ~~~~-~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~--~~~pl- 302 (358)
++++ ..+|++++++.+.. ++|+|++..++||+ ..+ +++|.++|+++|++|++|+++. .+.+.+. .++..
T Consensus 146 ~~~~~~~~d~~~l~~~~~~-~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~-~~~~~~~~~~~~~~~ 223 (388)
T PRK07366 146 RAENDFLPVFADIPTEVLA-QARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYV-DLVFDGEVEPPSILQ 223 (388)
T ss_pred CCccCCCCCHHHHHHhhcc-cceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchh-hcccCCCCCCCChhh
Confidence 6443 46899999876643 68988887777764 444 6678889999999999999865 4443332 12211
Q ss_pred -C-CCc--EEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 303 -K-YCD--VVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 303 -~-gaD--iv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
+ ..+ +++.|++|++ +|.|.|+++++++
T Consensus 224 ~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~ 256 (388)
T PRK07366 224 ADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQ 256 (388)
T ss_pred CCCCcccEEEEeecccccCCcchhheehcCCHH
Confidence 2 112 6788999997 6888999998764
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-14 Score=144.19 Aligned_cols=229 Identities=16% Similarity=0.108 Sum_probs=144.9
Q ss_pred ccccccChHHHHHHHHHHHHh----hhcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQ----FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQ 154 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~----~~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~ 154 (358)
+++....+..+..+.....+. ...+++-..++ .+++.+.+++...+......+|+. .|.. ++++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y~~----~G~~---~lr~aia 79 (399)
T PRK07681 7 TRMKAFQSSIFSELGAYKKEKIAAGHKMIDLSIGNPDMPPADFVREEMVHTANQKESYGYTL----SGIQ---EFHEAVT 79 (399)
T ss_pred HHHhhcCccHHHHHHHHHHHhhhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhccccCCCCC----CCcH---HHHHHHH
Confidence 344444455554444443322 23355543333 367888998887654322223321 2433 5666666
Q ss_pred HHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC
Q 018300 155 KRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (358)
Q Consensus 155 ~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~ 233 (358)
+++.+.+|.+-+ +..+|++++|+ +|+..++.++++|||+|++++|.|.++.. .+...|. +++++++++
T Consensus 80 ~~~~~~~g~~~~-~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~--------~~~~~G~--~~~~v~~~~ 148 (399)
T PRK07681 80 EYYNNTHNVILN-ADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYET--------GIQMAGA--TSYYMPLKK 148 (399)
T ss_pred HHHHHHhCCCCC-CCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHH--------HHHhcCC--EEEEEecCC
Confidence 666666665321 10146667766 48999999999999999999987765432 2345565 555666765
Q ss_pred CC-CCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCC---CCC
Q 018300 234 ST-GLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---FKY 304 (358)
Q Consensus 234 ~~-~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p---l~g 304 (358)
++ ..+|++++++.+.. ++|+|++..+++| ...+ +++|.++|+++|++|++|+++. .+.+.+..+.+ +++
T Consensus 149 ~~~~~~d~~~l~~~~~~-~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~-~~~~~~~~~~~~~~~~~ 226 (399)
T PRK07681 149 ENDFLPDLELIPEEIAD-KAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYA-EFYFDGNKPISFLSVPG 226 (399)
T ss_pred CCCCcCCHHHHHHhccc-cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccch-hheeCCCCCCChhhCCC
Confidence 43 36899999887753 7899888766665 4555 7788899999999999999976 44433321111 121
Q ss_pred ---CcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 305 ---CDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 305 ---aDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
-.+++.|++|.+ +|.|.|+++.+++
T Consensus 227 ~~~~~i~~~S~SK~~~~~GlRiG~~i~~~~ 256 (399)
T PRK07681 227 AKEVGVEINSLSKSYSLAGSRIGYMIGNEE 256 (399)
T ss_pred CcccEEEEeecccccCCccceeEEEecCHH
Confidence 247788999987 5778899998763
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-16 Score=154.05 Aligned_cols=192 Identities=14% Similarity=0.054 Sum_probs=130.0
Q ss_pred hcccccccCCCCcHH-HHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEe-CCCHHH
Q 018300 103 KSLELIASENFTSRA-VMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGSPA 180 (358)
Q Consensus 103 ~~i~lias~n~~s~~-V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~-~SGt~A 180 (358)
..+.+.++...+++. |++++...+.. .. ..+.++.+.+++ +++.++++||++.. . ..+++ .|||.+
T Consensus 12 ~~~~f~~Gp~~~~~~~v~~a~~~~~~~------~~---hr~~~f~~~~~~-~r~~l~~l~~~~~~-~-~v~~~~gs~T~~ 79 (378)
T PRK03080 12 ADPRFSSGPCKKRPGWQLEALADALLG------RS---HRQKPVKALLKR-VIEGTRELLSLPEG-Y-EVGIVPGSDTGA 79 (378)
T ss_pred CCCCcCCCCcCCChHHHHHHHHhhhcc------cC---cCCHHHHHHHHH-HHHHHHHHhCCCCC-c-eEEEECCchHHH
Confidence 456788888888888 99999854321 11 123466666665 89999999998532 1 12334 488999
Q ss_pred HHHHHHHhccC-CCEEEecCCCCCcccccccccchhccccCCc-eEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEc
Q 018300 181 NFEVYTAILKP-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258 (358)
Q Consensus 181 ~~~a~~all~p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~ 258 (358)
+.+++.+++++ ++.|+. +.+|+.. +.. ...+..|. .++.+. .+ +++.+|+++++. +|+|.+.
T Consensus 80 ~~~~~~~l~~~~~~~vi~-~g~f~~~----~~~--~~~~~~g~~~v~~~~--~~-~g~~~d~~~i~~------~~~V~~~ 143 (378)
T PRK03080 80 WEMALWSLLGARRVDHLA-WESFGSK----WAT--DVVKQLKLEDPRVLE--AD-YGSLPDLSAVDF------DRDVVFT 143 (378)
T ss_pred HHHHHHhcCCCCcceEEE-eCHHHHH----HHH--HHHhhcCCCCceEec--cC-CCCCCCHhhcCC------CCCEEEE
Confidence 99999999875 555554 4444432 110 01123354 444444 33 345788776432 3445543
Q ss_pred C--CCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 259 A--SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 259 ~--s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+ +.+|...|+++|++ +++|+++++|++|++|.. |..++.+|++++|+||||.||.| |+++.+++
T Consensus 144 h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~-----pidv~~iD~~~~s~~K~l~~P~G~g~l~v~~~ 210 (378)
T PRK03080 144 WNGTTTGVRVPVARWIG--ADREGLTICDATSAAFAL-----PLDWSKLDVYTFSWQKVLGGEGGHGMAILSPR 210 (378)
T ss_pred ecCCccceeccchhhcc--ccCCCeEEEecccccccC-----CCCHHHCcEEEEehhhhCCCCCceEEEEECHH
Confidence 3 34688999999999 889999999999998865 22333789999999999999998 88888873
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=149.27 Aligned_cols=175 Identities=21% Similarity=0.204 Sum_probs=130.4
Q ss_pred CCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccc
Q 018300 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (358)
Q Consensus 134 ~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (358)
|-++|+ |++..+.+|.. ++++.|+.. .+.+.||+.|+..++..++++||+|+..+..|+|.... ..
T Consensus 69 ~~Ysr~--~nPt~~~le~~----iaal~ga~~-----~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~--l~- 134 (409)
T KOG0053|consen 69 YDYSRS--GNPTRDVLESG----IAALEGAAH-----ALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRI--LR- 134 (409)
T ss_pred cccccC--CCCchHHHHHH----HHHHhCCce-----EEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHH--HH-
Confidence 445454 56777777764 788999987 36789999999999999999999999998888885331 11
Q ss_pred hhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCCHHHHHHHHHHcCCEEEEecccccc
Q 018300 214 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISG 291 (358)
Q Consensus 214 ~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~dl~~I~~ia~e~g~~livD~Ah~~G 291 (358)
+.....|. +...++ .-|++++++.+++ ++++|+++.+.+|. ..|+++|+++||++|+++++|++-+
T Consensus 135 -~~~~~~gi--e~~~vd------~~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~-- 202 (409)
T KOG0053|consen 135 -KFLPKFGG--EGDFVD------VDDLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFG-- 202 (409)
T ss_pred -HHHHHhCc--eeeeec------hhhHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcC--
Confidence 11122333 222322 2256677777765 78999999888874 7899999999999999999999833
Q ss_pred ccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhh
Q 018300 292 LVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 292 l~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
.+....|+. |||||+.|..|++.|.. ||.++.+.+ ++.+++..
T Consensus 203 ---~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~-----~~~~~l~~ 249 (409)
T KOG0053|consen 203 ---SPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSE-----ELASRLKF 249 (409)
T ss_pred ---cccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcH-----HHHHHHHH
Confidence 333456777 89999999999999975 688888754 66666654
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-15 Score=145.78 Aligned_cols=197 Identities=22% Similarity=0.225 Sum_probs=133.2
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD 193 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD 193 (358)
.++.+++++...+. ++...+...++..|.. ++.+.+++++++++|.+. .+.++||++++..++.++++|||
T Consensus 48 ~~~~~~~a~~~~~~-~~~~~~~~~~~~~g~~---~l~~~l~~~l~~~~g~~~-----~i~~~sG~~a~~~a~~~~~~~gd 118 (385)
T TIGR01825 48 DHPRLKEAAAQAIQ-QYGVGAGAVRTIAGTL---RLHEELEEKLAKFKKTEA-----ALVFQSGFNTNQGVLSALLRKGD 118 (385)
T ss_pred CCHHHHHHHHHHHH-HcCCCCCccCcccCCc---HHHHHHHHHHHHHhCCCc-----EEEECcHHHHHHHHHHHhCCCCC
Confidence 68888888877654 2322222222334443 344556778899999754 47788999999999999999999
Q ss_pred EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc---CCeEEEEcCCC--CCCCCCH
Q 018300 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIAGASA--YPRDFDY 268 (358)
Q Consensus 194 ~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~---~~klIi~~~s~--~~~~~dl 268 (358)
+|++.++.|+++.. .+...+.. ...+ ..+|++++++.+... ++++|+++... .|...|+
T Consensus 119 ~vi~~~~~~~~~~~--------~~~~~g~~--~~~~------~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~ 182 (385)
T TIGR01825 119 IVLSDELNHASIID--------GLRLTKAT--KKIY------KHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPL 182 (385)
T ss_pred EEEEEccccHHHHH--------HHHhcCCc--eEEe------CCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCH
Confidence 99988876655421 22334432 2221 157888888876542 56788776533 4567899
Q ss_pred HHHHHHHHHcCCEEEEecccccccccc-CC--c-cCCCC-CCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 269 PRMRQIADAVGALLMMDMAHISGLVAA-SV--V-ADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 269 ~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~--~-~~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
++|.++|+++|+++++|++|..|.... +. . ...++ ..|+++.|+||+|+ ..||+++.++ ++.+.+..
T Consensus 183 ~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~gG~~~~~~------~~~~~~~~ 254 (385)
T TIGR01825 183 PEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIG-VVGGYAAGHK------ELIEYLKN 254 (385)
T ss_pred HHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhh-cCCCEEecCH------HHHHHHHH
Confidence 999999999999999999997664421 11 0 01233 67899999999984 5678888766 45555543
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-14 Score=142.44 Aligned_cols=227 Identities=14% Similarity=0.062 Sum_probs=143.8
Q ss_pred cccccccChHHHHHHHHHHHHh----hhcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHH
Q 018300 80 DYSLGEADPEVCEIITKEKERQ----FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 153 (358)
Q Consensus 80 ~~~l~~~d~~~~~~i~~e~~~~----~~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~ 153 (358)
+.+++.+.+..+..+.+...+. ...++|-.+++ .+++.+++++.+.+.+.. .+|+. ..|.+ ++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~Y~~---~~g~~---~lr~~i 78 (387)
T PRK08960 6 SRRSRDIEPFHVMALLARANELEAAGHDVIHLEIGEPDFTTAEPIVAAGQAALAAGH-TRYTA---ARGLP---ALREAI 78 (387)
T ss_pred hhHHHhCCchHHHHHHHHHHHHHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhcCC-CccCC---CCCCH---HHHHHH
Confidence 4455566666655554443322 23355543333 468899999988776321 12322 12332 566655
Q ss_pred HHHHHHHcCC--CCCCCcceEEeCCC-HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEece
Q 018300 154 QKRALAAFNL--DENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (358)
Q Consensus 154 ~~~la~lfg~--~~~~~~v~V~~~SG-t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~ 230 (358)
.+++.+.+|. +++ +|.+++| ++|+..++.++++|||+|+++++.|.++.. .+...|..+. .++
T Consensus 79 a~~~~~~~g~~~~~~----~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~--------~~~~~g~~~~--~v~ 144 (387)
T PRK08960 79 AGFYAQRYGVDVDPE----RILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRH--------FLRLVEGAAQ--LVP 144 (387)
T ss_pred HHHHHHHhCCCCChh----hEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHH--------HHHhcCCeEE--EEe
Confidence 6666655554 443 4555655 569999999999999999999987766532 2234465444 444
Q ss_pred ecCC-CCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-
Q 018300 231 LDES-TGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK- 303 (358)
Q Consensus 231 ~~~~-~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~- 303 (358)
++++ +..+|++++++.+++ +++++++..+++| ...+ +++|+++|+++|+++++|+++. ++...+..+..+.
T Consensus 145 ~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~-~~~~~~~~~~~~~~ 222 (387)
T PRK08960 145 VGPDSRYQLTPALVERHWNA-DTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYH-GLTYGVDAASVLEV 222 (387)
T ss_pred cCcccCCCCCHHHHHHHhCc-cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCCCCCChhhc
Confidence 5543 347999999998764 5676666555554 4555 5667778999999999999965 4443332222222
Q ss_pred CCc-EEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 304 YCD-VVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 304 gaD-iv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
..+ +++.|++|.+ +|.|.|+++++++
T Consensus 223 ~~~vi~~~S~SK~~g~~GlRiG~~~~~~~ 251 (387)
T PRK08960 223 DDDAFVLNSFSKYFGMTGWRLGWLVAPPA 251 (387)
T ss_pred cCCEEEEeecccccCCcccEEEEEEcCHH
Confidence 223 6789999987 6778899999874
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-14 Score=143.91 Aligned_cols=227 Identities=16% Similarity=0.070 Sum_probs=148.8
Q ss_pred ccccChHHHHHHHHHHHHhh------hcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHH
Q 018300 83 LGEADPEVCEIITKEKERQF------KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQ 154 (358)
Q Consensus 83 l~~~d~~~~~~i~~e~~~~~------~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~ 154 (358)
++...++.+..+...+++.. .-++|-..++ .+++.+.+++...+......+||. .|.. ++++.+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~~~Y~~----~G~~---~lr~aia 91 (410)
T PRK06290 19 GKETVIYKFEKIKRAKRAAKEKHPDMELIDMGVGEPDEMADESVVEVLCEEAKKPENRGYAD----NGIQ---EFKEAAA 91 (410)
T ss_pred cccCchhHHHHHHHHHHHHhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC----CCcH---HHHHHHH
Confidence 34555666666665555432 2344543333 367888888876553222223442 2333 5666677
Q ss_pred HHHHHHcCCC-CCCCcceEEeCCCHH-HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec
Q 018300 155 KRALAAFNLD-ENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (358)
Q Consensus 155 ~~la~lfg~~-~~~~~v~V~~~SGt~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~ 232 (358)
+++.+.+|.+ -+ ..-+|.+++|+. |+..++.+++++||+|++++|.|.++.. .+...|. ++++++++
T Consensus 92 ~~~~~~~g~~~~~-~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~g~--~v~~v~~~ 160 (410)
T PRK06290 92 RYMEKVFGVKDID-PVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGT--------HTKYYGG--EVYNLPLL 160 (410)
T ss_pred HHHHHHcCCCcCC-CcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHH--------HHHHcCC--EEEEEecC
Confidence 7777667754 21 101477888875 8889999999999999999987665432 2234565 55566666
Q ss_pred CCC-CCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCC--CC-
Q 018300 233 EST-GLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP--FK- 303 (358)
Q Consensus 233 ~~~-~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p--l~- 303 (358)
+++ ..+|++++++.+.. ++|+|++..++||+ ..+ +++|.++|+++|++|++|+++. .+.+.+..++. +.
T Consensus 161 ~~~~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~-~~~~~~~~~s~~~~~~ 238 (410)
T PRK06290 161 EENNFLPDLDSIPKDIKE-KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYA-ALTFDGKPLSFLSVPG 238 (410)
T ss_pred CCcCCcCCHHHHHHhhcc-cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchh-hceeCCCCcChhcCCC
Confidence 543 46899999888754 78999887667654 555 5778888999999999999976 43333322121 11
Q ss_pred --CCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 304 --YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 304 --gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
..++++.|++|.+ +|.|.|+++++++
T Consensus 239 ~~~~~I~i~SfSK~~g~~GlRiG~ii~~~~ 268 (410)
T PRK06290 239 AKEVGVEIHSLSKAYNMTGWRLAFVVGNEL 268 (410)
T ss_pred ccccEEEEeechhhcCCchhheEeEEeCHH
Confidence 3458999999997 6778899998763
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.2e-15 Score=146.00 Aligned_cols=230 Identities=13% Similarity=0.148 Sum_probs=150.7
Q ss_pred hcccccccChHHHHHHHHHHHHhhhccccccc--CCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHH
Q 018300 79 VDYSLGEADPEVCEIITKEKERQFKSLELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKR 156 (358)
Q Consensus 79 ~~~~l~~~d~~~~~~i~~e~~~~~~~i~lias--~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~ 156 (358)
+.+++....+.++..+.+.... ..-+++-.+ +...++.+++++...+.... .+|+. ..|.+ ++++..+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~Y~~---~~G~~---~lr~~~a~~ 79 (386)
T PRK09082 8 PQSKLPNVGTTIFTVMSALAAE-HGAINLSQGFPDFDGPPYLVEALAYAMAAGH-NQYPP---MTGVA---ALREAIAAK 79 (386)
T ss_pred hhhHhhccCccHHHHHHHHHhh-CCEEEecCCCCCCCCCHHHHHHHHHHHHcCC-CCCCC---CCCcH---HHHHHHHHH
Confidence 3455666666666655543332 233555432 22346889998887664322 23432 12333 566667778
Q ss_pred HHHHcCCCCCCCcceEEeCCC-HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC
Q 018300 157 ALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST 235 (358)
Q Consensus 157 la~lfg~~~~~~~v~V~~~SG-t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 235 (358)
+.+.+|.+.+ ...+|.+++| +.|+..++.++++|||+|++.++.|.++.. .+...|. +++++++++++
T Consensus 80 l~~~~~~~~~-~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~ 148 (386)
T PRK09082 80 TARLYGRQYD-ADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAP--------AIELAGG--RAVRVALQPPD 148 (386)
T ss_pred HHHHhCCCCC-CCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEEecCccc
Confidence 8888887542 1113555555 679999999999999999999886665421 2344565 45566666556
Q ss_pred CCCCHHHHHHHhhhcCCeEEEEcCCCCCC--C---CCHHHHHHHHHHcCCEEEEeccccccccccCC-ccCCC--C---C
Q 018300 236 GLVDYDMLEKTAILFRPKLIIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPF--K---Y 304 (358)
Q Consensus 236 ~~iD~d~le~~i~~~~~klIi~~~s~~~~--~---~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~~pl--~---g 304 (358)
..+|++++++.+.. ++|+|++..+++|+ . .++++|.++|+++|+++++|.++. .+.+.+. .++.. + .
T Consensus 149 ~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~-~~~~~~~~~~s~~~~~~~~~ 226 (386)
T PRK09082 149 FRVDWQRFAAAISP-RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYE-HIVFDGAGHASVLRHPELRE 226 (386)
T ss_pred ccCCHHHHHHhcCc-cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhh-hhccCCCCCCChhhCcCccC
Confidence 78999999998864 68888886556553 3 468889999999999999999975 3343322 22222 1 2
Q ss_pred CcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 305 CDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 305 aDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
-.+++.|++|++ +|.|.|+++++++
T Consensus 227 ~~i~~~S~SK~~~~~G~RiG~iv~~~~ 253 (386)
T PRK09082 227 RAFVVSSFGKTYHVTGWKVGYCVAPAA 253 (386)
T ss_pred cEEEEeechhhccchhhhhhhhhCCHH
Confidence 347889999997 5778899998764
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.3e-15 Score=146.24 Aligned_cols=198 Identities=15% Similarity=0.132 Sum_probs=132.6
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCC-HHHHHHHHHHhccC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKP 191 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SG-t~A~~~a~~all~p 191 (358)
.+++.+.+++...+.+....+|+. ..|.+ ++++.+++++++.+|.+.. +.-+|++++| ++|+..++.++++|
T Consensus 53 ~p~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~LR~aia~~l~~~~g~~~~-~~~~I~it~Ga~~al~~~~~~l~~~ 125 (405)
T PRK06207 53 EPTPGAFELFSAGVERGGVQAYTE---YRGDA---DIRELLAARLAAFTGAPVD-AADELIITPGTQGALFLAVAATVAR 125 (405)
T ss_pred CCCHHHHHHHHHHHhcCCCccCCC---CCCCH---HHHHHHHHHHHHHhCCCCC-CCCCEEEeCCcHHHHHHHHHHhcCC
Confidence 466788888877665432334543 23443 5677778888888896421 0013555555 56999999999999
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceEEEEeceec---C-CCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--C
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD---E-STGLVDYDMLEKTAILFRPKLIIAGASAYPR--D 265 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~ 265 (358)
||+|++.++.|.++.. .+...|.. +++++++ + ++..+|+++|++.+.. ++|+|++..++||+ .
T Consensus 126 Gd~Vlv~~P~y~~~~~--------~~~~~g~~--v~~v~~~~~~~~~~~~~d~~~l~~~~~~-~~k~v~l~~P~NPTG~~ 194 (405)
T PRK06207 126 GDKVAIVQPDYFANRK--------LVEFFEGE--MVPVQLDYLSADKRAGLDLDQLEEAFKA-GVRVFLFSNPNNPAGVV 194 (405)
T ss_pred CCEEEEeCCCchhHHH--------HHHHcCCE--EEEEeccccCcccCCCcCHHHHHHhhhh-cCeEEEECCCCCCCCcC
Confidence 9999999987765432 23445654 3444443 1 2357999999998764 68888777667654 5
Q ss_pred CC---HHHHHHHHHHcCCEEEEeccccccccccCC-ccCC--CCC-Cc--EEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 266 FD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP--FKY-CD--VVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 266 ~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~~p--l~g-aD--iv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
.+ +++|.++|+++|++|++|+++. .+.+.+. .+.. ++. .| +++.|++|++ +|.|.|+++.+++
T Consensus 195 ~s~e~l~~l~~~a~~~~~~iI~De~Y~-~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~~~ 268 (405)
T PRK06207 195 YSAEEIAQIAALARRYGATVIVDQLYS-RLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSPA 268 (405)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecccc-ccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcCHH
Confidence 54 7788899999999999999965 4443332 1111 111 12 7889999997 5889999998763
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.1e-15 Score=141.90 Aligned_cols=197 Identities=20% Similarity=0.229 Sum_probs=138.7
Q ss_pred CCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCC-CCCcceEEeCCCHHHHHHHHHHhc
Q 018300 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGSPANFEVYTAIL 189 (358)
Q Consensus 111 ~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~-~~~~v~V~~~SGt~A~~~a~~all 189 (358)
+-.++|.|++|+...+.+ ...|||. +. +++-+.+++|.++..+-+. .+| .++..+...++..++.++.
T Consensus 36 Df~~pp~i~~Al~~rvdh-GvfGY~~-----~~---~~~~~ai~~w~~~r~~~~i~~e~--i~~~p~VVpgi~~~I~~~T 104 (388)
T COG1168 36 DFPTPPEIIEALRERVDH-GVFGYPY-----GS---DELYAAIAHWFKQRHQWEIKPEW--IVFVPGVVPGISLAIRALT 104 (388)
T ss_pred cCCCCHHHHHHHHHHHhc-CCCCCCC-----CC---HHHHHHHHHHHHHhcCCCCCcce--EEEcCcchHhHHHHHHHhC
Confidence 557899999999887654 3457774 22 2355567888888888763 333 3344455679999999999
Q ss_pred cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCC--CCCHHHHHHHhhhcCCeEEEE-cCCC-CCCC
Q 018300 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG--LVDYDMLEKTAILFRPKLIIA-GASA-YPRD 265 (358)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~iD~d~le~~i~~~~~klIi~-~~s~-~~~~ 265 (358)
+|||.|++..|.|.... +.++..|+.+ ++.++..+++ .+|+++||+.+...++|++++ +++| .|+.
T Consensus 105 ~~gd~Vvi~tPvY~PF~--------~~i~~n~R~~--i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grv 174 (388)
T COG1168 105 KPGDGVVIQTPVYPPFY--------NAIKLNGRKV--IENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRV 174 (388)
T ss_pred cCCCeeEecCCCchHHH--------HHHhhcCcEE--EeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCcc
Confidence 99999999988665421 2456677744 4433443344 689999999988777787665 5443 4555
Q ss_pred C---CHHHHHHHHHHcCCEEEEeccccccccccCCccCC---CC--CCc--EEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 266 F---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADP---FK--YCD--VVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 266 ~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p---l~--gaD--iv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
+ ++.+|.++|++||++||+|+-|+ .++..|....| ++ .+| +.+.|.+|+| +|.+.+.++..++
T Consensus 175 wt~eeL~~i~elc~kh~v~VISDEIHa-Dlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~ 249 (388)
T COG1168 175 WTKEELRKIAELCLRHGVRVISDEIHA-DLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNR 249 (388)
T ss_pred ccHHHHHHHHHHHHHcCCEEEeecccc-cccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCH
Confidence 5 47889999999999999999998 77776632222 33 455 6678889996 6777776666554
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.2e-15 Score=151.27 Aligned_cols=206 Identities=23% Similarity=0.233 Sum_probs=130.8
Q ss_pred hcccccccCCCC-----cHHHHHHHhhhhhcccCCCCCCCcCCCC-cHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCC
Q 018300 103 KSLELIASENFT-----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLS 176 (358)
Q Consensus 103 ~~i~lias~n~~-----s~~V~~al~~~l~~~~~~G~pg~r~~~G-~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~S 176 (358)
..+++ +|.||. ++.+.++....+. +|..+..+.|...| .+..+++| +.+++++|.+. .+.+++
T Consensus 101 ~~~n~-~s~~YLgl~~~~~~~~~~~~~ai~-~~g~~~~~sr~~~g~~~~~~ele----~~lA~~~g~~~-----ai~~~~ 169 (489)
T PLN02483 101 RCLNL-GSYNYLGFAAADEYCTPRVIESLK-KYSASTCSSRVDGGTTKLHRELE----ELVARFVGKPA-----AIVFGM 169 (489)
T ss_pred eEEEe-ecCCccCcCCCCHHHHHHHHHHHH-HhCCCCCccccccCCcHHHHHHH----HHHHHHhCCCc-----EEEECC
Confidence 44554 677764 2233333333322 34344455564444 44444444 55889999765 367789
Q ss_pred CHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh------c
Q 018300 177 GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL------F 250 (358)
Q Consensus 177 Gt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~------~ 250 (358)
|+.++..++.++++|||+|++.++.|.+... .+...|..+. .++.+ |.+++++.+++ .
T Consensus 170 G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~--------~~~~~Ga~v~--~~~~~------d~~~le~~l~~~i~~~~p 233 (489)
T PLN02483 170 GYATNSTIIPALIGKGGLIISDSLNHNSIVN--------GARGSGATIR--VFQHN------TPSHLEEVLREQIAEGQP 233 (489)
T ss_pred HHHHHHHHHHHhCCCCCEEEEcchhhHHHHH--------HHHHcCCeEE--EEeCC------CHHHHHHHHHhhhhcccc
Confidence 9999999999999999999998886655422 3345666443 33332 45666554431 1
Q ss_pred C-----CeEE-EEcC--CCCCCCCCHHHHHHHHHHcCCEEEEecccccccccc-CC--cc-CCC--CCCcEEEEcCcCcC
Q 018300 251 R-----PKLI-IAGA--SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV--VA-DPF--KYCDVVTTTTHKSL 316 (358)
Q Consensus 251 ~-----~klI-i~~~--s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~--~~-~pl--~gaDiv~~S~hK~L 316 (358)
+ .+++ +++. +..|...++++|.++|+++|++|++|++|+.|.... |. .+ ..+ .+.|++++|++|+|
T Consensus 234 ~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~ 313 (489)
T PLN02483 234 RTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSF 313 (489)
T ss_pred ccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhc
Confidence 1 1544 4433 234667899999999999999999999998765421 11 11 112 26799999999998
Q ss_pred ccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 317 RGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 317 ~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
|+.||++++++ ++.+.+..
T Consensus 314 -g~~GG~i~~~~------~li~~l~~ 332 (489)
T PLN02483 314 -GSCGGYIAGSK------ELIQYLKR 332 (489)
T ss_pred -ccCceEEEcCH------HHHHHHHH
Confidence 45789999877 45555554
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=143.37 Aligned_cols=221 Identities=16% Similarity=0.142 Sum_probs=137.5
Q ss_pred cccChHHHHHHHHHHHHhh---hcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHH
Q 018300 84 GEADPEVCEIITKEKERQF---KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (358)
Q Consensus 84 ~~~d~~~~~~i~~e~~~~~---~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la 158 (358)
..++|..|..++.-+.+.. +.|+|-..++ .+++.+++++...+.......|+. ..| .++ .|++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~---~~g------~~~-lr~~ia 76 (380)
T PRK06225 7 AKVPPSGFKTSNEFFDYVFKDKEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPP---PEG------FPE-LRELIL 76 (380)
T ss_pred cccCcchhhhHHHHHHHHhhcCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCC---Ccc------hHH-HHHHHH
Confidence 3445555555555444432 3344433333 568999999988765432222322 112 222 456688
Q ss_pred HHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec--CCCC
Q 018300 159 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--ESTG 236 (358)
Q Consensus 159 ~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ 236 (358)
+++|+++++ .+++.++++|+..++.+++++||+|++.++.|..+. ..+...|.. +++++++ ++++
T Consensus 77 ~~l~~~~~~---v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~--------~~~~~~g~~--~~~v~~~~~~~~~ 143 (380)
T PRK06225 77 KDLGLDDDE---ALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIID--------NFASRFGAE--VIEVPIYSEECNY 143 (380)
T ss_pred HhcCCCCCc---EEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH--------HHHHHhCce--EEeeccccccCCc
Confidence 899998742 233445667999999999999999999887543321 123345653 4444443 2234
Q ss_pred CCCHHHHHHHhhhcCCeEEEEcCCCCC--CCC---CHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEE
Q 018300 237 LVDYDMLEKTAILFRPKLIIAGASAYP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTT 310 (358)
Q Consensus 237 ~iD~d~le~~i~~~~~klIi~~~s~~~--~~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~ 310 (358)
.+|++++++.+.. ++++|++..+++| ... ++++|.++|+++|+++++|+++. ++.........++ ...+++.
T Consensus 144 ~~d~~~l~~~~~~-~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~i~~~ 221 (380)
T PRK06225 144 KLTPELVKENMDE-NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYR-DFAREHTLAAEYAPEHTVTSY 221 (380)
T ss_pred cCCHHHHHhhcCC-CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHH-HHhccCCchhhcCCCCEEEEe
Confidence 7999999998764 6888876555544 333 58899999999999999999864 3221110001112 3457788
Q ss_pred cCcCcCc--cCcEEEEEEeCC
Q 018300 311 TTHKSLR--GPRGGMIFFKKD 329 (358)
Q Consensus 311 S~hK~L~--Gp~GG~I~~~~~ 329 (358)
|++|+++ |.|.|+++++++
T Consensus 222 s~SK~~g~~G~RiG~i~~~~~ 242 (380)
T PRK06225 222 SFSKIFGMAGLRIGAVVATPD 242 (380)
T ss_pred echhhcCCccceeEEEecCHH
Confidence 9999983 556799999763
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-14 Score=141.80 Aligned_cols=230 Identities=17% Similarity=0.133 Sum_probs=142.6
Q ss_pred ccccccChHHHHHHHHHHHHh---h-hcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQ---F-KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQ 154 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~---~-~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~ 154 (358)
+++....+..+..+.+...+. . .-++|-.+++ .+++.+++++...+.......|+. ..|. .++.+.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~---~~lr~aia 79 (385)
T PRK09276 6 DRIKNLPPYLFAEIDKKKAEKIARGVDVISLGIGDPDLPTPDHIIEAMCKAVEDPENHQYPS---YEGM---LEFRKAVA 79 (385)
T ss_pred hHhhhCCccHHHHHHHHHHHHHhcCCCEEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC---CCCc---HHHHHHHH
Confidence 344555555554443333222 2 3344443333 457788988877654322223433 2233 25666666
Q ss_pred HHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC
Q 018300 155 KRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (358)
Q Consensus 155 ~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~ 233 (358)
+++.+.+|.+.+ ..-+|.+++|+ +|+..++.++++|||+|+++++.|..+.. .....|. +++.+++++
T Consensus 80 ~~~~~~~g~~~~-~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~--------~~~~~g~--~~~~v~~~~ 148 (385)
T PRK09276 80 DWYKRRFGVELD-PETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKI--------GTIFAGG--EPYFMPLKE 148 (385)
T ss_pred HHHHHHhCCCCC-CCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHH--------HHHHcCC--EEEEEecCC
Confidence 677666675321 10136666665 69999999999999999999986654321 2234565 444555654
Q ss_pred CC-CCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCC-ccC--CCC-
Q 018300 234 ST-GLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VAD--PFK- 303 (358)
Q Consensus 234 ~~-~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~~--pl~- 303 (358)
++ ..+|++++++.+.. ++|+|++..++|| ...+ +++|.++|+++|+++++|+++. .+...+. .++ .++
T Consensus 149 ~~g~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~ 226 (385)
T PRK09276 149 ENGFLPDLDAIPEDVAK-KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYS-EIAYDGYKPPSFLEVPG 226 (385)
T ss_pred CCCCcCCHHHHHHhccc-cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchh-heecCCCCCCChhccCC
Confidence 43 46899999887754 7898888766665 4555 5788889999999999999976 3333221 111 122
Q ss_pred --CCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 304 --YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 304 --gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
...+++.|++|.+ +|.|.|+++++++
T Consensus 227 ~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~ 256 (385)
T PRK09276 227 AKDVGIEFHSLSKTYNMTGWRIGFAVGNAD 256 (385)
T ss_pred CcCCEEEEecchhhcCCcchhheeeeCCHH
Confidence 2247789999987 5667799998764
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-14 Score=143.48 Aligned_cols=227 Identities=14% Similarity=0.124 Sum_probs=143.6
Q ss_pred cccccccChHHHHHHHHHHHHhhhcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHH
Q 018300 80 DYSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (358)
Q Consensus 80 ~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~l 157 (358)
++++..+....+..+.+.......-++|-..++ .+++.+++++...+.... .+|.. ..|. .++++.+.+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~---~~g~---~~lr~~ia~~~ 83 (391)
T PRK08361 11 AGRINLIQRSKIRELFERASKMENVISLGIGEPDFDTPKNIKEAAKRALDEGW-THYTP---NAGI---PELREAIAEYY 83 (391)
T ss_pred hHHHHhCCccHHHHHHHHHHhhcCeEEcCCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCc---HHHHHHHHHHH
Confidence 455555555554444333322233455554333 246788888877654322 12321 1233 35776666666
Q ss_pred HHHcCC--CCCCCcceEEeCC-CHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC
Q 018300 158 LAAFNL--DENKWGVNVQPLS-GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES 234 (358)
Q Consensus 158 a~lfg~--~~~~~~v~V~~~S-Gt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~ 234 (358)
.+.+|. +++ +|.+++ +++|+..++.++++|||+|+++++.|.++.. .+...|. ++++++++++
T Consensus 84 ~~~~g~~~~~~----~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~ 149 (391)
T PRK08361 84 KKFYGVDVDVD----NVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVE--------DAKIAEA--KPIRIPLREE 149 (391)
T ss_pred HHHhCCCCCcc----cEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHH--------HHHHcCC--EEEEEecCCc
Confidence 666664 343 344555 4569999999999999999999987655422 2334565 4555556544
Q ss_pred -CCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCC---HHHHHHHHHHcCCEEEEeccccccccccCC-ccCC--CC-C
Q 018300 235 -TGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP--FK-Y 304 (358)
Q Consensus 235 -~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~~p--l~-g 304 (358)
+..+|++++++.+.. ++++|++..+++ |...| +++|.++|+++++++++|+++. .+...+. .+.. ++ .
T Consensus 150 ~~~~~d~~~l~~~i~~-~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~ 227 (391)
T PRK08361 150 NEFQPDPDELLELITK-RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYE-HFLYEGAKHYPMIKYAPD 227 (391)
T ss_pred cCCCCCHHHHHHhccc-ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccc-cceeCCCCCCCHhhcCCC
Confidence 347999999998764 678887765565 45677 7888999999999999999976 3332221 1111 12 3
Q ss_pred CcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 305 CDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 305 aDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
.++++.|++|++ +|.|.|+++++++
T Consensus 228 ~~i~~~s~SK~~~~~GlRiG~~~~~~~ 254 (391)
T PRK08361 228 NTILANSFSKTFAMTGWRLGFVIAPEQ 254 (391)
T ss_pred CEEEEecCchhcCCcHhhhhhhccCHH
Confidence 468899999987 4556799999764
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=148.44 Aligned_cols=164 Identities=21% Similarity=0.195 Sum_probs=112.6
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCc
Q 018300 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (358)
Q Consensus 143 ~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (358)
++...++|+. +++++ .+. .+.+.||+.|+..++.++++|||+|+++++.|+++.... ...+...|.
T Consensus 50 ~p~~~~Le~~----lA~l~-~~~-----~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~----~~~l~~~G~ 115 (366)
T PRK07582 50 NPTWRALEAA----LGELE-GAE-----ALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALA----REYLAPLGV 115 (366)
T ss_pred CccHHHHHHH----HHHHc-CCC-----EEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHH----HHHHhcCeE
Confidence 4445566654 67777 222 477899999999999999999999999887665532110 011122354
Q ss_pred eEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccccccccCCccC
Q 018300 223 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300 (358)
Q Consensus 223 ~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~ 300 (358)
++..++.+++ .+ .. . .++|+|++..+++| ...|+++|.++|+++|+++++|++|+... + ..
T Consensus 116 --~v~~v~~~~~-----~~---~~-~-~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~---~--~~ 178 (366)
T PRK07582 116 --TVREAPTAGM-----AE---AA-L-AGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPL---G--QR 178 (366)
T ss_pred --EEEEECCCCh-----HH---Hh-c-cCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCcc---c--cC
Confidence 4444444311 11 22 2 36889988777765 46899999999999999999999986432 1 23
Q ss_pred CCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhh
Q 018300 301 PFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 301 pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
|++ ++|++++|+||+|.||. +|+++++++ ++.+++..
T Consensus 179 p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~-----~l~~~l~~ 219 (366)
T PRK07582 179 PLELGADLVVASDTKALTGHSDLLLGYVAGRDP-----ELMAAVER 219 (366)
T ss_pred chhcCCcEEEecccccccCCCCeeEEEEEcCcH-----HHHHHHHH
Confidence 566 89999999999998876 488888655 55555543
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-14 Score=140.90 Aligned_cols=227 Identities=14% Similarity=0.133 Sum_probs=142.2
Q ss_pred cccccChHHHHHHHHHHHHhhhcccccc--cCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHH
Q 018300 82 SLGEADPEVCEIITKEKERQFKSLELIA--SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALA 159 (358)
Q Consensus 82 ~l~~~d~~~~~~i~~e~~~~~~~i~lia--s~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~ 159 (358)
+++.+.++++..+.+.... ...++|-. ++...++.+.+++...+.... .+|+. ..|. .++++.+.+++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-~~Y~~---~~g~---~~lr~~ia~~~~~ 76 (387)
T PRK07777 5 RLRPFGTTIFAEMSALAVR-TGAVNLGQGFPDEDGPPEMLEAAQEAIAGGV-NQYPP---GPGI---PELRAAIAAQRRR 76 (387)
T ss_pred hhhhcCccHHHHHHHHHhh-CCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCC---HHHHHHHHHHHHH
Confidence 3555666655544444432 23455442 233345667777666554321 22332 1233 3567766777777
Q ss_pred HcCCCCCCCcceEEeCC-CHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC--CC
Q 018300 160 AFNLDENKWGVNVQPLS-GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TG 236 (358)
Q Consensus 160 lfg~~~~~~~v~V~~~S-Gt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~ 236 (358)
.+|.+.. ..-+|.+++ |+.|+.+++.++++|||+|++.++.|.++.. .+...|.. .++++++++ ++
T Consensus 77 ~~g~~~~-~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~--------~~~~~g~~--~~~~~~~~~~~~~ 145 (387)
T PRK07777 77 RYGLEYD-PDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAA--------VIAMAGAH--RVPVPLVPDGRGF 145 (387)
T ss_pred HhCCCCC-CCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHH--------HHHHCCCE--EEEeecCCccCCC
Confidence 7887532 101244454 5679999999999999999998876654321 23345653 344445543 34
Q ss_pred CCCHHHHHHHhhhcCCeEEEEcCCCCC--CCC---CHHHHHHHHHHcCCEEEEeccccccccccCCccCCC------CCC
Q 018300 237 LVDYDMLEKTAILFRPKLIIAGASAYP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF------KYC 305 (358)
Q Consensus 237 ~iD~d~le~~i~~~~~klIi~~~s~~~--~~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl------~ga 305 (358)
.+|++++++.+.. ++++|++..+++| ... ++++|.++|+++|+++++|+++. ++.+.+....++ .+.
T Consensus 146 ~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~-~~~~~~~~~~~~~~~~~~~~~ 223 (387)
T PRK07777 146 ALDLDALRAAVTP-RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYE-HLVFDGARHLPLATLPGMRER 223 (387)
T ss_pred cCCHHHHHHhcCc-ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccch-hcccCCCCcccHhhCCCCcCc
Confidence 6999999998764 6888888766654 333 48889999999999999999975 444322211122 135
Q ss_pred cEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 306 DVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 306 Div~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
++++.|++|+| +|.|.|+++.+++
T Consensus 224 ~i~~~S~SK~~g~~GlRiG~~~~~~~ 249 (387)
T PRK07777 224 TVTISSAAKTFNVTGWKIGWACGPAP 249 (387)
T ss_pred EEEEeechhhccCcCceeEEEecCHH
Confidence 68899999997 4667799998763
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-15 Score=147.26 Aligned_cols=202 Identities=14% Similarity=0.132 Sum_probs=134.9
Q ss_pred cccccccCCCCcHHHHHHHhhhhhcccCCCCCC-CcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHH
Q 018300 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPG-KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (358)
Q Consensus 104 ~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg-~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~ 182 (358)
.+.++|++..+|+.|++|+...+.+..+.|... .......++.+.+++ ++++++++||...+ +.+.+...|||.|+.
T Consensus 4 ~~l~~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~-~~~~l~~l~~~~~~-~~v~~~~gsgt~~~E 81 (360)
T PRK05355 4 VYNFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEE-AEADLRELLNIPDN-YKVLFLQGGASLQFA 81 (360)
T ss_pred eeeccCCCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHH-HHHHHHHHhCCCCC-cEEEEEcCCchHHHH
Confidence 356789999999999999988764322111110 112335566666665 79999999998332 224455568888999
Q ss_pred HHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHH-HhhhcCCeEEEEcC--
Q 018300 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK-TAILFRPKLIIAGA-- 259 (358)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~-~i~~~~~klIi~~~-- 259 (358)
+++.+++.+||++++.. +|.++|.+. +.++..|.. ..+. .++..+..+..++++ .+++ ++++|.+.+
T Consensus 82 a~~~nl~~~g~~~l~i~---~G~fg~r~~---~~a~~~g~~-~~~~--~~~~~g~~~~~~~~~~~l~~-~~~~V~~th~e 151 (360)
T PRK05355 82 MVPMNLLGGGKKADYVD---TGSWSKKAI---KEAKKYGEV-NVAA--SSEDDGFTYIPPLDEWQLSD-DAAYVHYTSNE 151 (360)
T ss_pred HHHHhcCCCCCeEEEEE---CCHHHHHHH---HHHHHhCCc-eEEe--cccccCCCCCCChhhccCCC-CCCEEEEccCC
Confidence 99999999999998775 355555542 223344542 3333 332244555545544 5544 688887654
Q ss_pred CCCCCCC-CHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 260 SAYPRDF-DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 260 s~~~~~~-dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+++|... |+++| +|+++++|++|++|.. +.+++..|++++|.||+| ||.| |+++.+++
T Consensus 152 TstGv~~~~i~~i------~g~l~vVDavss~g~~-----~idv~~~d~~~~ssqK~l-gP~Glg~l~~s~~ 211 (360)
T PRK05355 152 TIDGTEFHELPDT------GDVPLVADMSSDILSR-----PIDVSKFGLIYAGAQKNI-GPAGLTIVIVRED 211 (360)
T ss_pred CcceEecCccccc------CCCcEEEEcCccccCc-----cCCHHHccEEEEeccccc-cCCceEEEEECHH
Confidence 3456665 66665 8999999999998864 233336689999999987 6998 88888874
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-14 Score=140.57 Aligned_cols=228 Identities=14% Similarity=0.115 Sum_probs=144.5
Q ss_pred ccccccChHHHHHHHHHHHHhhhcccccc--cCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQFKSLELIA--SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~~~~i~lia--s~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la 158 (358)
+++...++..+..+.+.... ...++|-. ++...++.+.+++...+.+.. .+|+. ..|.+ ++++.+.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~-~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~-~~Y~~---~~G~~---~lr~~ia~~~~ 77 (387)
T PRK08912 6 PVFADLPTTIFEVMSQLARE-HGAINLGQGFPDDPGPEDVRRAAADALLDGS-NQYPP---MMGLP---ELRQAVAAHYA 77 (387)
T ss_pred HHHhhCCCCHHHHHHHHHhh-CCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCcH---HHHHHHHHHHH
Confidence 44555566666555544432 23344432 233456778887766554321 23443 22333 56666677777
Q ss_pred HHcCCCCCCCcceEEeCCC-HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCC
Q 018300 159 AAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL 237 (358)
Q Consensus 159 ~lfg~~~~~~~v~V~~~SG-t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 237 (358)
+.+|.+.+ +..+|.+++| ++|+..++.++++|||+|+++++.|.++.. .+...|. ++++++++++++.
T Consensus 78 ~~~g~~~~-~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~ 146 (387)
T PRK08912 78 RFQGLDLD-PETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLP--------LIRRAGG--VPRLVRLEPPHWR 146 (387)
T ss_pred HHhCCCCC-CcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEEecCcccCc
Confidence 77775421 1113555555 669999999999999999999987655421 2345565 4445556544568
Q ss_pred CCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCC-ccC--CCC---CCc
Q 018300 238 VDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VAD--PFK---YCD 306 (358)
Q Consensus 238 iD~d~le~~i~~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~~--pl~---gaD 306 (358)
+|++++++.+.. ++|+|++..+++| ...+ +++|.++|+++|+++++|+++. .+.+.+. .+. .++ ..+
T Consensus 147 ~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~ 224 (387)
T PRK08912 147 LPRAALAAAFSP-RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWE-HVVFDGRRHIPLMTLPGMRERT 224 (387)
T ss_pred CCHHHHHHHhCc-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhh-hcccCCCCCcChhhCCCccCce
Confidence 999999998754 7888887766665 3454 7778999999999999999976 3333321 111 111 346
Q ss_pred EEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 307 VVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 307 iv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
+++.|++|.+ +|.|.|+++++++
T Consensus 225 i~~~S~SK~~g~~GlRiG~~~~~~~ 249 (387)
T PRK08912 225 VKIGSAGKIFSLTGWKVGFVCAAPP 249 (387)
T ss_pred EEEeechhhccCcCceeEEEecCHH
Confidence 8899999986 5667799998764
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-14 Score=139.63 Aligned_cols=226 Identities=15% Similarity=0.109 Sum_probs=141.4
Q ss_pred ccccccChHHHHHHHHHHHHh----hhcccccccC--CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQ----FKSLELIASE--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQ 154 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~----~~~i~lias~--n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~ 154 (358)
+++....+..+..+.+...+. ..-+.|-..+ ..+++.+.+++...+.+.. .+|+. ..|. .++++.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~---~~g~---~~lr~~ia 77 (388)
T PRK07337 5 ARVDAIEPFYVMELAKEAQALERAGRDIIHMGIGEPDFTAPEPVVEAAARALRRGV-TQYTS---ALGL---APLREAIA 77 (388)
T ss_pred hHhHhcCchHHHHHHHHHHHHHhcCCCEEEeCCcCCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCC---HHHHHHHH
Confidence 344444554444444433322 2334443333 3357888999887665321 23332 1232 35666666
Q ss_pred HHHHHHcCC--CCCCCcceEEeCCC-HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee
Q 018300 155 KRALAAFNL--DENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (358)
Q Consensus 155 ~~la~lfg~--~~~~~~v~V~~~SG-t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~ 231 (358)
+++.+.+|. +++ +|.+++| +.|+..++.+++++||+|+++++.|.++.. .+...|. +++++++
T Consensus 78 ~~~~~~~~~~~~~~----~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~ 143 (388)
T PRK07337 78 AWYARRFGLDVAPE----RIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRH--------FVAAAEG--RPVLVPS 143 (388)
T ss_pred HHHHHHhCCCCChH----hEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEeec
Confidence 666666675 332 3545555 569999999999999999999987766432 2234455 3445556
Q ss_pred cCC-CCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CC---CHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-C
Q 018300 232 DES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-Y 304 (358)
Q Consensus 232 ~~~-~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-g 304 (358)
+++ ++.+|++++++.+.. ++++|++..+++|+ .. ++++|.++|+++|+++++|.++. ++...+...+.+. +
T Consensus 144 ~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~ 221 (388)
T PRK07337 144 GPAERFQLTAADVEAAWGE-RTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQ-GLSYDAAPVSALSLG 221 (388)
T ss_pred CCccCCcCCHHHHHhhcCc-cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEecccc-ccccCCCCcChhhcc
Confidence 543 458999999998764 67877776566553 44 47888999999999999999865 4443332222223 3
Q ss_pred Cc-EEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 305 CD-VVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 305 aD-iv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
.+ +++.|++|.+ +|.|.|+++++++
T Consensus 222 ~~vi~~~S~SK~~~~~G~RiG~~~~~~~ 249 (388)
T PRK07337 222 DDVITINSFSKYFNMTGWRLGWLVVPEA 249 (388)
T ss_pred CCEEEEEechhhcCCchhheeeeecCHH
Confidence 34 4577999987 5788899998863
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-14 Score=139.51 Aligned_cols=229 Identities=14% Similarity=0.104 Sum_probs=141.0
Q ss_pred cccccChHHHHHHHHHHHHh----hhccccccc--CCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHH
Q 018300 82 SLGEADPEVCEIITKEKERQ----FKSLELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK 155 (358)
Q Consensus 82 ~l~~~d~~~~~~i~~e~~~~----~~~i~lias--~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~ 155 (358)
++.+..+..+..+.+...+. ..-++|-.+ ....++.+.+++...+......+|+. ..|.. ++++.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g~~---~lr~aia~ 81 (389)
T PRK08068 8 LLKQLPKQFFASLVAKVNKKVAEGHDVINLGQGNPDQPTPEHIVEALQEAAENPANHKYSP---FRGYP---FLKEAAAD 81 (389)
T ss_pred HhhhcCccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC---CCCCH---HHHHHHHH
Confidence 34444444444443333322 233455422 22346778888877655332223432 12333 56666667
Q ss_pred HHHHHcCCCCCCCcceEEeCCC-HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC
Q 018300 156 RALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES 234 (358)
Q Consensus 156 ~la~lfg~~~~~~~v~V~~~SG-t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~ 234 (358)
++.+.+|.+-+ +.-+|.+++| +.++..++.++++|||+|++++|.|..+.. .+...|. ++++++++++
T Consensus 82 ~~~~~~g~~~~-~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~~~~i~~~~~ 150 (389)
T PRK08068 82 FYKREYGVTLD-PETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLS--------GVALARA--QFETMPLIAE 150 (389)
T ss_pred HHHHHhCCCCC-CCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHhcCC--EEEEeecccc
Confidence 76666674321 1113555555 468888889999999999999987765432 2345565 4455556644
Q ss_pred C-CCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCC-CC----
Q 018300 235 T-GLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP-FK---- 303 (358)
Q Consensus 235 ~-~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p-l~---- 303 (358)
+ ..+|++++++.+.. ++|+|++..+++| ...+ +++|.++|+++|+++++|+++. .+...+..+.+ +.
T Consensus 151 ~~~~~d~~~l~~~~~~-~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~-~~~~~~~~~~s~~~~~~~ 228 (389)
T PRK08068 151 NNFLPDYTKIPEEVAE-KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYG-AIGFDGQKPVSFLQTPGA 228 (389)
T ss_pred cCCCCCHHHHHHhccc-cceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhh-hhccCCCCCcChhhCCCc
Confidence 3 47899999988753 7898888766665 4555 4678889999999999999974 33333211111 11
Q ss_pred -CCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 304 -YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 304 -gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
.-.+++.|++|.| +|.|-|+++.+++
T Consensus 229 ~~~~i~~~S~SK~~g~~GlRiG~~~~~~~ 257 (389)
T PRK08068 229 KDVGIELYTLSKTFNMAGWRVAFAVGNES 257 (389)
T ss_pred cCCEEEEecchhccCCccceeEeEecCHH
Confidence 1237889999997 6778899998763
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-14 Score=140.59 Aligned_cols=231 Identities=19% Similarity=0.165 Sum_probs=143.1
Q ss_pred cccccccChHHHHHHHHHHHHhhhccccccc--CCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHH
Q 018300 80 DYSLGEADPEVCEIITKEKERQFKSLELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (358)
Q Consensus 80 ~~~l~~~d~~~~~~i~~e~~~~~~~i~lias--~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~l 157 (358)
++++...+......+.+.......-+++-.+ +..+++.+.+++...+.... ..|+. ..|. .++++.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~---~~g~---~~lr~~ia~~~ 80 (391)
T PRK07309 8 NKQLDKIEVSLIRQFDQSISDIPGILKLTLGEPDFTTPDHVKEAAKRAIDANQ-SHYTG---MAGL---LELRQAAADFV 80 (391)
T ss_pred HhhhhhcCccHHHHHHHHHHhcCCeEEcCCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCc---HHHHHHHHHHH
Confidence 3445555554444443322211233444322 23447778888876654322 12322 1232 36777777777
Q ss_pred HHHcCCCCCCCcceEEeCCC-HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCC
Q 018300 158 LAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 236 (358)
Q Consensus 158 a~lfg~~~~~~~v~V~~~SG-t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 236 (358)
...+|...... .+|.+++| ++|+..++.+++++||+|++.++.|.++.. .....|. +++.++.++++.
T Consensus 81 ~~~~~~~~~~~-~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~ 149 (391)
T PRK07309 81 KEKYNLDYAPE-NEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEP--------IVNLVGA--EIVEIDTTENDF 149 (391)
T ss_pred HHHhCCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHH--------HHHHcCC--EEEEEecCCcCC
Confidence 76667632100 13555555 679999999999999999999887766421 2334565 445555654445
Q ss_pred CCCHHHHHHHhhhc--CCeEEEEcCCCCC--CCC---CHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCc-
Q 018300 237 LVDYDMLEKTAILF--RPKLIIAGASAYP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCD- 306 (358)
Q Consensus 237 ~iD~d~le~~i~~~--~~klIi~~~s~~~--~~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaD- 306 (358)
.+|.+++++.++.. ++|+|++..+++| ... ++++|.++|+++|+++++|+++. .+...+....++. ..+
T Consensus 150 ~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~-~~~~~~~~~~~~~~~~~~~ 228 (391)
T PRK07309 150 VLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYS-ELTYTGEPHVSIAEYLPDQ 228 (391)
T ss_pred cCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEcccc-ceeeCCCCCCCHHHhccCC
Confidence 79999999887642 5788887755654 344 48889999999999999999976 4443232111221 112
Q ss_pred -EEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 307 -VVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 307 -iv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
+++.|++|.+ +|.|.|+++++++
T Consensus 229 ~i~~~S~SK~~g~~GlRvG~~v~~~~ 254 (391)
T PRK07309 229 TILINGLSKSHAMTGWRIGLIFAPAE 254 (391)
T ss_pred EEEEecChhhccCccceeEEEEeCHH
Confidence 7889999997 6778899999874
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-15 Score=148.71 Aligned_cols=183 Identities=17% Similarity=0.174 Sum_probs=125.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhc-cc
Q 018300 140 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRR-VS 218 (358)
Q Consensus 140 ~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~-~~ 218 (358)
|.|.+...++|+. ++++||.++ .+.++||+.|++.++...++|||+| +++ .|+.. ... +.
T Consensus 67 yag~~s~~~lE~~----va~~~G~~~-----av~v~sGT~Al~ll~~l~l~pGDeV--psn---~~f~T-----t~ahIe 127 (450)
T TIGR02618 67 YAGSRNFYHLERT----VRELYGFKY-----VVPTHQGRGAENLLSQIAIKPGDYV--PGN---MYFTT-----TRYHQE 127 (450)
T ss_pred hcCCCcHHHHHHH----HHHHHCCCe-----EEEcCCHHHHHHHHHHhCCCCcCEE--CCc---eeHHH-----HHHHHH
Confidence 5566666778774 788999987 3677899999887766669999988 332 22221 112 34
Q ss_pred cCCceEEEEecee---------cCCCCCCCHHHHHHHhhhcC---CeEEEE-cCCC-C-CCC---CCHHHHHHHHHHcCC
Q 018300 219 GTSIYFESMPYRL---------DESTGLVDYDMLEKTAILFR---PKLIIA-GASA-Y-PRD---FDYPRMRQIADAVGA 280 (358)
Q Consensus 219 ~~g~~~~~~~~~~---------~~~~~~iD~d~le~~i~~~~---~klIi~-~~s~-~-~~~---~dl~~I~~ia~e~g~ 280 (358)
..|. .++.+.. ++.++.+|+++|++.+++.. +++|.+ ...+ . |.. .++++|.++|+++|+
T Consensus 128 ~~Ga--v~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl 205 (450)
T TIGR02618 128 KNGA--TFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGI 205 (450)
T ss_pred hCCe--EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCC
Confidence 4554 2222212 24568999999999987532 224433 2223 2 455 468999999999999
Q ss_pred EEEEeccccccccc------cCCccCCC--------CCCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHHhhc--c
Q 018300 281 LLMMDMAHISGLVA------ASVVADPF--------KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNA--V 344 (358)
Q Consensus 281 ~livD~Ah~~Gl~~------~g~~~~pl--------~gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~~~--~ 344 (358)
+|+.|+||.+|--+ .|....++ .++|.+++|+||...+|.||+|+++++ ++.++++.. .
T Consensus 206 ~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~GG~l~~~d~-----~l~~k~r~~~~~ 280 (450)
T TIGR02618 206 KVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIGGFLCMNDD-----EMFQSAKELVVV 280 (450)
T ss_pred EEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCceEEEeCCH-----HHHHHHHHHhhh
Confidence 99999999985311 12222222 389999999999999999999999887 888888776 4
Q ss_pred CCcc
Q 018300 345 FPGL 348 (358)
Q Consensus 345 f~g~ 348 (358)
+.|+
T Consensus 281 ~eG~ 284 (450)
T TIGR02618 281 FEGM 284 (450)
T ss_pred cCCc
Confidence 4443
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=146.88 Aligned_cols=208 Identities=21% Similarity=0.221 Sum_probs=143.9
Q ss_pred cccccccCCCC----cHHHHHHHhhhhhcccCCCCCCCcCCCCcH-HHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH
Q 018300 104 SLELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGNE-YIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 178 (358)
Q Consensus 104 ~i~lias~n~~----s~~V~~al~~~l~~~~~~G~pg~r~~~G~~-~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt 178 (358)
.+....|++|+ +|.++++....+ .+|..|..++|...|+. ..+++|+ .+++++|.+.+ +.++||.
T Consensus 103 ~~l~FsSndYLGL~~~p~v~~a~~~ai-~~yG~g~~gSrl~~G~~~~h~~LE~----~LA~f~g~e~a-----ll~sSGy 172 (476)
T PLN02955 103 KLLLFSGNDYLGLSSHPTISNAAANAA-KEYGMGPKGSALICGYTTYHRLLES----SLADLKKKEDC-----LVCPTGF 172 (476)
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHH-HHcCCCCCCcCccccChHHHHHHHH----HHHHHHCCCcE-----EEECChH
Confidence 34445899996 899999988775 56767777888777764 3344555 58999999883 7789999
Q ss_pred HHHHHHHHHhc--------------cCCCEEEecCCCCCcccccccccchhccccCCc--eEEEEeceecCCCCCCCHHH
Q 018300 179 PANFEVYTAIL--------------KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI--YFESMPYRLDESTGLVDYDM 242 (358)
Q Consensus 179 ~A~~~a~~all--------------~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~iD~d~ 242 (358)
.||..++.++. +++|.|+.....|.+-. . .+.++.. ..++..|+ ..|+++
T Consensus 173 ~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~------d--G~~ls~~~~~a~~~~f~------HND~~~ 238 (476)
T PLN02955 173 AANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASII------D--GVRLAERQGNVEVFVYR------HCDMYH 238 (476)
T ss_pred HHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHH------H--HHHhccccCCceEEEeC------CCCHHH
Confidence 99999998872 45667776554333211 1 2222210 12344443 458899
Q ss_pred HHHHhhhcC--CeEEEEcC--CCCCCCCCHHHHHHHHHHcCCEEEEecccccccccc---CCcc-CCC-CCCcEEEEcCc
Q 018300 243 LEKTAILFR--PKLIIAGA--SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA---SVVA-DPF-KYCDVVTTTTH 313 (358)
Q Consensus 243 le~~i~~~~--~klIi~~~--s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~---g~~~-~pl-~gaDiv~~S~h 313 (358)
|+++++..+ .++|+++. +..|...|+++|.++|++||+.|++|.||+.|..+. |... ..+ +..|++++|+.
T Consensus 239 Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLs 318 (476)
T PLN02955 239 LNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLS 318 (476)
T ss_pred HHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCc
Confidence 998886432 34666652 445678899999999999999999999999887653 2111 112 26789999999
Q ss_pred CcCccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 314 KSLRGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 314 K~L~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
|.+ |-+||+|++++ ++.+.+..
T Consensus 319 KA~-G~~GGfi~gs~------~~~~~l~~ 340 (476)
T PLN02955 319 KAA-GCHGGFIACSK------KWKQLIQS 340 (476)
T ss_pred cch-hccCceeecHH------HHHHHHHH
Confidence 986 56799999987 45555543
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-14 Score=146.25 Aligned_cols=225 Identities=19% Similarity=0.116 Sum_probs=146.1
Q ss_pred hcccccccChHHHHHHHHHHHHhh-hc---ccccccC-----CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHH
Q 018300 79 VDYSLGEADPEVCEIITKEKERQF-KS---LELIASE-----NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDEL 149 (358)
Q Consensus 79 ~~~~l~~~d~~~~~~i~~e~~~~~-~~---i~lias~-----n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~l 149 (358)
.++++..+.+.....+.++..+.. .+ ++|-.++ ..+|+.+++++...+.. ..+|+. ..|.. ++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~--~~~Y~~---~~G~~---~l 190 (517)
T PRK13355 119 KSHKLDNVLYDVRGPVVDEANRMEAAGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTD--TEGYSD---SKGLF---SA 190 (517)
T ss_pred hhHHhhccCccHHHHHHHHHHHHHHcCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhc--CCCCCC---CcChH---HH
Confidence 577888888887765544444432 23 3443322 23588899998876542 234544 12332 45
Q ss_pred HHHHHHHHHHHc--CCCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEE
Q 018300 150 ETLCQKRALAAF--NLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 226 (358)
Q Consensus 150 E~~~~~~la~lf--g~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~ 226 (358)
++.+.+++.... +++++ +|.+++|+ +++..++.++++|||+|++++|.|..+.. .+...|. ++
T Consensus 191 Reaia~~~~~~~~~~~~~~----~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~--------~~~~~g~--~~ 256 (517)
T PRK13355 191 RKAIMQYAQLKGLPNVDVD----DIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTA--------CVNLAGG--TA 256 (517)
T ss_pred HHHHHHHHHhcCCCCCChh----HEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHH--------HHHHCCC--EE
Confidence 555444444333 34443 56677776 58999999999999999999987655422 2345565 45
Q ss_pred EeceecCC-CCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCC-cc
Q 018300 227 MPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VA 299 (358)
Q Consensus 227 ~~~~~~~~-~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~ 299 (358)
++++++++ +..+|++++++.+.. ++|+|++..++||+ ..+ +++|+++|+++|++|++|+++. .+.+.+. .+
T Consensus 257 v~~~~~~~~~~~~d~~~l~~~~~~-~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~-~~~~~~~~~~ 334 (517)
T PRK13355 257 VHYRCDEQSEWYPDIDDIRSKITS-RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYD-RLVMDGLEHT 334 (517)
T ss_pred EEeecCcccCCCCCHHHHHHhcCc-CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhh-hhcCCCCCcc
Confidence 55556654 357999999998764 78988776677653 555 7889999999999999999965 5554332 12
Q ss_pred CCCC-CCc---EEEEcCcCcC--ccCcEEEEEEe
Q 018300 300 DPFK-YCD---VVTTTTHKSL--RGPRGGMIFFK 327 (358)
Q Consensus 300 ~pl~-gaD---iv~~S~hK~L--~Gp~GG~I~~~ 327 (358)
+... ..| +++.|++|++ +|+|-|+++..
T Consensus 335 s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~ 368 (517)
T PRK13355 335 SIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILS 368 (517)
T ss_pred cHHHhCCCCeEEEEecchhhccCcccceEEEEee
Confidence 2111 123 3357999984 79999999854
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-14 Score=141.61 Aligned_cols=166 Identities=21% Similarity=0.251 Sum_probs=115.0
Q ss_pred HHHHHHcC-CCCCCCcceEEeCCC-HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec
Q 018300 155 KRALAAFN-LDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (358)
Q Consensus 155 ~~la~lfg-~~~~~~~v~V~~~SG-t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~ 232 (358)
+.++++++ .+++ +|.+++| ++|+..++.++++|||+|++..|.|.++.. .+...|. +++.++++
T Consensus 69 ~~ia~~~~~~~~~----~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~--------~~~~~g~--~v~~v~~~ 134 (373)
T PRK07324 69 EAVASLYQNVKPE----NILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLYD--------IPESLGA--EVDYWQLK 134 (373)
T ss_pred HHHHHHhcCCChh----hEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEecc
Confidence 34566664 5553 3555555 569999999999999999998875544321 2234565 44555565
Q ss_pred CCCC-CCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--C
Q 018300 233 ESTG-LVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--Y 304 (358)
Q Consensus 233 ~~~~-~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--g 304 (358)
++++ .+|++++++.+.. ++|+|++..+++| ...+ +++|+++|+++|+++++|+++. ++...+..++..+ .
T Consensus 135 ~~~~~~~d~~~l~~~~~~-~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~-~l~~~~~~~s~~~~~~ 212 (373)
T PRK07324 135 EENGWLPDLDELRRLVRP-NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYR-PLDEDGSTPSIADLYE 212 (373)
T ss_pred cccCCCCCHHHHHHhCCC-CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccc-ccccCCCCCChhhccC
Confidence 4443 6899999988754 7899988776665 4666 8889999999999999999964 5554432232222 2
Q ss_pred CcEEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 305 CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 305 aDiv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
-.+++.|++|++ +|.|-|++++++ ++.+++..
T Consensus 213 ~~I~~~s~SK~~~~~G~RiG~i~~~~------~li~~~~~ 246 (373)
T PRK07324 213 KGISTNSMSKTYSLPGIRVGWIAANE------EVIDILRK 246 (373)
T ss_pred CEEEEecchhhcCCccceeEEEecCH------HHHHHHHH
Confidence 247788999986 588889999965 45555544
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=144.69 Aligned_cols=183 Identities=14% Similarity=0.096 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhc--c-CCCEEEecCCCCCcccccccccchhccccCC
Q 018300 146 IDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAIL--K-PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 146 ~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all--~-pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
.-.+.+...+++++++|++... ..+.+++|| .++.+++.++- + +||+|+++... |.+. .+++...|
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~--~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~t---h~S~-----~kAi~~~G 172 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIK--SAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRID---QKSC-----IKAISTAG 172 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC--EEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcC---hHHH-----HHHHHHcC
Confidence 3455666677789999998321 135567788 58887777762 2 69999998753 4332 24667778
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhc--CCeEEEEcCCC-CC--CCCCHHHHHHHHHHcCCEEEEeccccccccccC
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASA-YP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAAS 296 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~--~~klIi~~~s~-~~--~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g 296 (358)
.....++..+++++..+|+++|++.+++. +..++++..++ ++ ...|+++|.++|+++|+++++|+||+.+.....
T Consensus 173 ~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~ 252 (444)
T TIGR03531 173 FEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYM 252 (444)
T ss_pred CeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhh
Confidence 75444442245667899999999999753 34455554443 33 468999999999999999999999986543211
Q ss_pred Ccc-CCCC--CCcEEEEcCcCcCccCc-EEEEEEeCCCCchhHHHHHHhhc
Q 018300 297 VVA-DPFK--YCDVVTTTTHKSLRGPR-GGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 297 ~~~-~pl~--gaDiv~~S~hK~L~Gp~-GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
..+ ..++ .+|++++|+||++..|- ||+|+++++ ++.+++...
T Consensus 253 ~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~-----el~~~i~~~ 298 (444)
T TIGR03531 253 ELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDE-----NFIQEISKS 298 (444)
T ss_pred hhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCH-----HHHHHHHHh
Confidence 111 1222 37999999999997764 677778776 677777653
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.7e-14 Score=139.61 Aligned_cols=191 Identities=17% Similarity=0.109 Sum_probs=125.7
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceEEeCCC-HHHHHHHHHHhc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG-SPANFEVYTAIL 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~--~~~~~~v~V~~~SG-t~A~~~a~~all 189 (358)
.+++.+.+++.+.+.... ..|+. ..|. .++++...+++...+|. +++ +|.+++| ++|+..++.+++
T Consensus 46 ~p~~~~~~~~~~~~~~~~-~~Y~~---~~g~---~~lr~~ia~~~~~~~g~~~~~~----~i~it~G~~~al~~~~~~~~ 114 (398)
T PRK08363 46 QPPEHMKEAYCRAIKEGH-NYYGP---SEGL---PELREAIVKREKRKNGVDITPD----DVRVTAAVTEALQLIFGALL 114 (398)
T ss_pred CCCHHHHHHHHHHHHcCC-CCCCC---CCCc---HHHHHHHHHHHHHhcCCCCChh----hEEEeCCHHHHHHHHHHHhC
Confidence 478889999887665321 12321 1222 35666666666555563 443 4556666 569999999999
Q ss_pred cCCCEEEecCCCCCcccccccccchhccccCCceEEEEec-eecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCC
Q 018300 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDF 266 (358)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~ 266 (358)
+|||+|+++++.|.++.. .+...|. +.+.+ +.++++..+|.+++++.+.. ++++|++..+++| ...
T Consensus 115 ~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~v~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~ 183 (398)
T PRK08363 115 DPGDEILIPGPSYPPYTG--------LVKFYGG--VPVEYRTIEEEGWQPDIDDIRKKITE-KTKAIAVINPNNPTGALY 183 (398)
T ss_pred CCCCEEEEcCCCCcchHH--------HHHHcCC--EEEEeccccccCCcCCHHHHHhhCCc-ceEEEEEECCCCCCCcCc
Confidence 999999999987665432 2234454 33444 34444557999999988754 6788877666654 455
Q ss_pred C---HHHHHHHHHHcCCEEEEeccccccccccCCccC--CCCCCc--EEEEcCcCcC--ccCcEEEEEE
Q 018300 267 D---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFKYCD--VVTTTTHKSL--RGPRGGMIFF 326 (358)
Q Consensus 267 d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~--pl~gaD--iv~~S~hK~L--~Gp~GG~I~~ 326 (358)
+ +++|.++|+++|+++++|+++. .+.+.+.... .++..+ +++.|++|++ +|.|-|+++.
T Consensus 184 ~~~~~~~l~~~a~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~ 251 (398)
T PRK08363 184 EKKTLKEILDIAGEHDLPVISDEIYD-LMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYF 251 (398)
T ss_pred CHHHHHHHHHHHHHcCeEEEEhhhhh-hhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEEE
Confidence 5 8899999999999999999976 3333332111 112222 5678999995 6778899997
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-15 Score=145.99 Aligned_cols=171 Identities=19% Similarity=0.134 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCC-CCCCcceEEeCCCHHHHHHHHHHhcc------------CCC--EEEecCCCCCccccc
Q 018300 144 EYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAILK------------PHD--RIMGLDLPHGGHLSH 208 (358)
Q Consensus 144 ~~~~~lE~~~~~~la~lfg~~-~~~~~v~V~~~SGt~A~~~a~~all~------------pGD--~Vl~~~~~~ggh~s~ 208 (358)
+...++|+.+++++++++|.+ ... ..+++.+||.||+.++.++.. +|| +|+++++.|.++.
T Consensus 34 ~~~~~le~~~~~~~~~~~g~~~~~~--~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~-- 109 (345)
T cd06450 34 PAATEMEAEVVNWLAKLFGLPSEDA--DGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVE-- 109 (345)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCC--CEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHH--
Confidence 345689999999999999996 221 245667888999999988742 333 6777776554321
Q ss_pred ccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc-----CCeEEEEcCCC--CCCCCCHHHHHHHHHHcCCE
Q 018300 209 GFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASA--YPRDFDYPRMRQIADAVGAL 281 (358)
Q Consensus 209 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~-----~~klIi~~~s~--~~~~~dl~~I~~ia~e~g~~ 281 (358)
+.+...|. +++.+++++ ++.+|+++|++.+.+. ++++|++..++ +|...|+++|.++|+++|++
T Consensus 110 ------~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~ 180 (345)
T cd06450 110 ------KAAAYLDV--KVRLVPVDE-DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLW 180 (345)
T ss_pred ------HHHHHHhc--CeEEeeeCC-CCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCe
Confidence 12233454 444555664 4589999999988641 56776654433 56788999999999999999
Q ss_pred EEEeccccccccccCCcc---CCCCCCcEEEEcCcCcCccCcE-EEEEEe
Q 018300 282 LMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFK 327 (358)
Q Consensus 282 livD~Ah~~Gl~~~g~~~---~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~ 327 (358)
+++|++|+.+........ ..+.++|++++|+||++.+|.| |+++.+
T Consensus 181 l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~ 230 (345)
T cd06450 181 LHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR 230 (345)
T ss_pred EEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH
Confidence 999999987754211110 1123789999999999988765 666443
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=144.06 Aligned_cols=194 Identities=22% Similarity=0.213 Sum_probs=129.1
Q ss_pred cccCCCC----cHHHHHHHhhhhhcccCCCCCCCcCCCCc-HHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHH
Q 018300 108 IASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (358)
Q Consensus 108 ias~n~~----s~~V~~al~~~l~~~~~~G~pg~r~~~G~-~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~ 182 (358)
..+++|. +|.|++++...+. ++..+..+.|.+.|. +...++| +++++++|.+. .+.++||+.||.
T Consensus 51 ~~sn~yl~l~~~p~v~~a~~~~~~-~~~~~~~~s~~~~~~~~~~~~Le----~~la~~~g~~~-----~i~~~sG~~a~~ 120 (410)
T PRK13392 51 WCSNDYLGMGQHPDVIGAMVDALD-RYGAGAGGTRNISGTSHPHVLLE----RELADLHGKES-----ALLFTSGYVSND 120 (410)
T ss_pred EECCCccCCCCCHHHHHHHHHHHH-HcCCCCchhhhcccChHHHHHHH----HHHHHHhCCCC-----EEEECcHHHHHH
Confidence 4666663 8899999987664 454444444444443 2333444 45889999754 477899999999
Q ss_pred HHHHHhc--cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhh---hcCCeEEEE
Q 018300 183 EVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI---LFRPKLIIA 257 (358)
Q Consensus 183 ~a~~all--~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~---~~~~klIi~ 257 (358)
.++..+. .|||.|++....|++... .+...|..+..+ +. .|.+.+++.+. ..++++|++
T Consensus 121 ~~i~~l~~~~~g~~vi~~~~~h~s~~~--------~~~~~g~~~~~~--~~------~d~~~l~~~l~~~~~~~t~~v~i 184 (410)
T PRK13392 121 AALSTLGKLLPGCVILSDALNHASMIE--------GIRRSGAEKQVF--RH------NDLADLEEQLASVDPDRPKLIAF 184 (410)
T ss_pred HHHHHHhcCCCCCEEEEehhhhHHHHH--------HHHHcCCeEEEE--eC------CCHHHHHHHHHhccCCCCEEEEE
Confidence 9998774 489988887655544321 233455543322 21 14555555543 236788888
Q ss_pred cCCCC--CCCCCHHHHHHHHHHcCCEEEEecccccccccc-CC-cc---CCCCCCcEEEEcCcCcCccCcEEEEEEeC
Q 018300 258 GASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV-VA---DPFKYCDVVTTTTHKSLRGPRGGMIFFKK 328 (358)
Q Consensus 258 ~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~-~~---~pl~gaDiv~~S~hK~L~Gp~GG~I~~~~ 328 (358)
..+++ |...|+++|.++|+++|+++++|++|+.|+... |. .. ...+..|+++.|++|+|+++ ||++++++
T Consensus 185 ~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~-GG~~~~~~ 261 (410)
T PRK13392 185 ESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCL-GGYIAASA 261 (410)
T ss_pred eCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhcc-cchhhcCH
Confidence 76554 568899999999999999999999999876531 11 11 11225789999999998654 68888766
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=139.81 Aligned_cols=196 Identities=13% Similarity=0.111 Sum_probs=134.0
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhccC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKP 191 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~p 191 (358)
.+|+.+++++.+.+......+|+. +...+ .|+.++++++++++ +|.+++|+. ++..++.++++|
T Consensus 35 ~~p~~~~~a~~~~~~~~~~~~y~~-------~~~~~----lr~~ia~~~~~~~~----~i~it~G~~~~l~~~~~~l~~~ 99 (351)
T PRK14807 35 ELPEEVIKNIQEIVKSSQVNIYPD-------PTAEK----LREELARYCSVVPT----NIFVGNGSDEIIHLIMLAFINK 99 (351)
T ss_pred CCCHHHHHHHHHHhhcCcccCCCC-------ccHHH----HHHHHHHHhCCCcc----cEEEecCHHHHHHHHHHHhcCC
Confidence 468999999877654322222322 11123 35557888898764 466777765 788888899999
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHH
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYP 269 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~ 269 (358)
||+|++.++.+..+.. .....|. ++++++++ +++.+|++++++.+...++|+|++..+++ |...+.+
T Consensus 100 gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~ 168 (351)
T PRK14807 100 GDVVIYPHPSFAMYSV--------YSKIAGA--VEIPVKLK-EDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIERE 168 (351)
T ss_pred CCEEEEeCCChHHHHH--------HHHHcCC--eEEEeecC-CCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHH
Confidence 9999999876554311 2234565 44555565 34679999999988655789888766665 4688999
Q ss_pred HHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 270 RMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 270 ~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
++.++|++++.++++|++|. ++. +...+..++ .--+++.|++|++ +|.|-|+++.++ ++.+++..
T Consensus 169 ~l~~l~~~~~~~~ivDe~y~-~~~-~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~------~~~~~~~~ 237 (351)
T PRK14807 169 DIIKIIEKSRGIVVVDEAYF-EFY-GNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANE------NILKYLNL 237 (351)
T ss_pred HHHHHHHhCCCEEEEeCcch-hhc-ccchHHHhhhCCCEEEEecchHhcccchhceeeeecCH------HHHHHHHH
Confidence 99999999999999999975 432 221111122 2237889999997 678889999876 55555554
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.7e-14 Score=138.13 Aligned_cols=230 Identities=14% Similarity=0.137 Sum_probs=143.2
Q ss_pred chhcccccccChHHHHHHHHHHHHhhhcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHH
Q 018300 77 SFVDYSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQ 154 (358)
Q Consensus 77 ~~~~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~ 154 (358)
+++++++....+..+..+.+.......-++|--+++ .+++.+++++...+.... ..|+. ..|.+ ++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-~~Y~~---~~G~~---~lr~~ia 76 (384)
T PRK06348 4 KFLAKKYQQMEVNIMAEIATLAKKFPDIIDLSLGDPDLITDESIINAAFEDAKKGH-TRYTD---SGGDV---ELIEEII 76 (384)
T ss_pred hHHHHHHhcCCccHHHHHHHHHHhcCCcEEcCCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCcH---HHHHHHH
Confidence 345566666666655544443322223355543332 345677765544333221 22332 12332 4666666
Q ss_pred HHHHHHcCC--CCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee
Q 018300 155 KRALAAFNL--DENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (358)
Q Consensus 155 ~~la~lfg~--~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~ 231 (358)
+++.+.+|. +++ +|.+++|+ +|+..++.++++|||+|++.++.|.++.. .+...|. ++++++.
T Consensus 77 ~~~~~~~~~~~~~~----~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~ 142 (384)
T PRK06348 77 KYYSKNYDLSFKRN----EIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKD--------QIEMVGG--KPIILET 142 (384)
T ss_pred HHHHHHhCCCCChh----hEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHH--------HHHHcCC--EEEEecC
Confidence 677666554 443 45566665 59999999999999999999987765432 2334455 4455554
Q ss_pred cC-CCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CC---CHHHHHHHHHHcCCEEEEeccccccccccCCccC--CCC
Q 018300 232 DE-STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK 303 (358)
Q Consensus 232 ~~-~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~--pl~ 303 (358)
++ ++..+|++++++.+.. ++|+|++..+++|+ .. ++++|.++|+++|++|++|+++. ++...+..+. .++
T Consensus 143 ~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~ 220 (384)
T PRK06348 143 YEEDGFQINVKKLEALITS-KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYD-GFSFYEDFVPMATLA 220 (384)
T ss_pred CcCcCCcCCHHHHHHhhCc-CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccc-cceeCCCccchhhcC
Confidence 32 3346999999998753 78888776666654 44 37888899999999999999965 4443332111 122
Q ss_pred ---CCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 304 ---YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 304 ---gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
.-.+++.|++|++ +|.|.|+++++++
T Consensus 221 ~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~ 251 (384)
T PRK06348 221 GMPERTITFGSFSKDFAMTGWRIGYVIAPDY 251 (384)
T ss_pred CCcCcEEEEecchhccCCccccceeeecCHH
Confidence 1237788999996 5788999999763
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.2e-14 Score=136.56 Aligned_cols=195 Identities=14% Similarity=0.098 Sum_probs=129.3
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhccC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKP 191 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~p 191 (358)
.+++.+++++.+.... ...|+. ..|.. ++++.+.+++.+.+|..-+ ...+|.+++|+. |+..++.+++++
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~Y~~---~~G~~---~lr~aia~~~~~~~g~~~~-~~~~Iiit~Gs~~ai~~~~~~~~~~ 83 (350)
T TIGR03537 13 PTPPFIRKALIDAVPE--VSQYPS---ALGTK---ALREAISGWFERRFGVKLD-PDAQVLPSAGSKEAIFHFPLVFIDP 83 (350)
T ss_pred CCCHHHHHHHHHHHhc--cCCCCC---CCCCH---HHHHHHHHHHHHHhCCCCC-CCCcEEEcCChHHHHHHHHHHHcCC
Confidence 4578888888765432 223433 22333 5677677777766675321 101467788765 999999989988
Q ss_pred C---CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC-CCCCHHHHHHHhhhcCCeEEEEcCCCCC--CC
Q 018300 192 H---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIAGASAYP--RD 265 (358)
Q Consensus 192 G---D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~iD~d~le~~i~~~~~klIi~~~s~~~--~~ 265 (358)
| |+|+++++.|.++.. .+...|. +++++++++++ ..+|++++++.+.. ++|+|++..+++| ..
T Consensus 84 g~~~d~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~ 152 (350)
T TIGR03537 84 EEDRRRVIFGTPGYPVYER--------GALFAGG--EPTAVKLKKEDGFLLRLEKVEKSILE-ETKIVWINYPHNPTGAT 152 (350)
T ss_pred CCCCceEEEcCCCCcchHH--------HHHhcCC--EEEEcccCcccCCccCHHHHHHhhhh-ccEEEEEeCCCCCcCcc
Confidence 8 699999886655432 2345565 45566665333 36899999998764 7898888766665 45
Q ss_pred CC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CC--cEEEEcCcCcC--ccCcEEEEEEeC
Q 018300 266 FD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YC--DVVTTTTHKSL--RGPRGGMIFFKK 328 (358)
Q Consensus 266 ~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-ga--Div~~S~hK~L--~Gp~GG~I~~~~ 328 (358)
.+ +++|.++|+++|+++++|+++.. +...+..++... .. .+++.|++|++ +|.|.|+++.++
T Consensus 153 ~~~~~~~~l~~~a~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~~~ 222 (350)
T TIGR03537 153 APRSYLKETIAMCREHGIILCSDECYTE-IYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDE 222 (350)
T ss_pred cCHHHHHHHHHHHHHcCcEEEEeccccc-cccCCCCCchhhcCcCCEEEEeecccccCCccccceeeecCH
Confidence 66 88899999999999999999763 222221111111 22 37778999986 577889998765
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-14 Score=133.89 Aligned_cols=195 Identities=19% Similarity=0.180 Sum_probs=145.6
Q ss_pred cccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHH
Q 018300 106 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (358)
Q Consensus 106 ~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~ 185 (358)
.|+|++.-.|+.|++||... ..|+- ..+++..+. ...+-++..|....+. ..++..+|+.|+..++
T Consensus 20 L~gPGPsnl~~~V~~A~~~~-----~lgh~------sPe~~qIm~-~v~egikyVFkT~n~~--tf~isgsGh~g~E~al 85 (385)
T KOG2862|consen 20 LLGPGPSNLSGRVQEAMSRP-----SLGHM------SPEFVQIMD-EVLEGIKYVFKTANAQ--TFVISGSGHSGWEAAL 85 (385)
T ss_pred eecCCCcCCCHHHHHhhcCC-----ccccC------CHHHHHHHH-HHHHHHHHHhccCCCc--eEEEecCCcchHHHHH
Confidence 67899999999999998643 23432 234554444 3677789999988753 4677889999999999
Q ss_pred HHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEE--cCCCCC
Q 018300 186 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA--GASAYP 263 (358)
Q Consensus 186 ~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~--~~s~~~ 263 (358)
.+++.|||+|++... |.+++.+. .-.+..|..+++++ .+ ..+...++++++.+..++|++|.+ +.++++
T Consensus 86 ~N~lePgd~vLv~~~---G~wg~ra~---D~~~r~ga~V~~v~--~~-~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTg 156 (385)
T KOG2862|consen 86 VNLLEPGDNVLVVST---GTWGQRAA---DCARRYGAEVDVVE--AD-IGQAVPLEEITEKLSQHKPKAVFVTHGDSSTG 156 (385)
T ss_pred HhhcCCCCeEEEEEe---chHHHHHH---HHHHhhCceeeEEe--cC-cccCccHHHHHHHHHhcCCceEEEEecCcccc
Confidence 999999999998653 55554431 12345576666665 33 245789999999999999998866 456788
Q ss_pred CCCC-HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeC
Q 018300 264 RDFD-YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKK 328 (358)
Q Consensus 264 ~~~d-l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~ 328 (358)
...| ++.+.++|++|+++++||..-++|-. +...| |+|+..+..+|.|.+|.| +.|..++
T Consensus 157 V~q~~~~~~g~lc~k~~~lllVD~VaSlggt-----~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ 220 (385)
T KOG2862|consen 157 VLQDLLAISGELCHKHEALLLVDTVASLGGT-----EFEMDEWGVDVAYTGSQKALGAPAGLSIISFSD 220 (385)
T ss_pred ccchHHHHHHHHhhcCCeEEEEechhhcCCc-----cceehhhcccEEEecchhhcCCCCCcceeecCH
Confidence 8889 67778999999999999998666532 22334 999999999999999999 6655554
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.9e-15 Score=154.69 Aligned_cols=164 Identities=16% Similarity=0.093 Sum_probs=119.9
Q ss_pred HHHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEece
Q 018300 152 LCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (358)
Q Consensus 152 ~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~ 230 (358)
++++.++++||++.+ .+.++||+ +|.+++.++++|||+|++.. ++|.|.. ..+.++|....++.-.
T Consensus 209 eAq~~aA~~fgA~~t-----~FlvNGST~gn~a~i~a~~~~gd~Vlv~R---N~HKSv~-----~al~L~ga~Pvyl~P~ 275 (755)
T PRK15029 209 ESEKYAARVFGADRS-----WSVVVGTSGSNRTIMQACMTDNDVVVVDR---NCHKSIE-----QGLILTGAKPVYMVPS 275 (755)
T ss_pred HHHHHHHHHhCCCcE-----EEEeCChhHHHHHHHHHhcCCCCEEEeec---ccHHHHH-----HHHHHcCCeEEEeccc
Confidence 367778999999984 44566665 99999999999999999865 5776632 2456777643333222
Q ss_pred ecCCCC---CCC-----HHHHHHHhhhcC-Ce--------EEEE-cCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccc
Q 018300 231 LDESTG---LVD-----YDMLEKTAILFR-PK--------LIIA-GASAYPRDFDYPRMRQIADAVGALLMMDMAHISGL 292 (358)
Q Consensus 231 ~~~~~~---~iD-----~d~le~~i~~~~-~k--------lIi~-~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl 292 (358)
.+ +.+ .++ ++.+++.+..+. +| ++++ +++.+|...|+++|+++|+++|++|++|+||...+
T Consensus 276 ~~-~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~ 354 (755)
T PRK15029 276 RN-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_pred cc-ccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHHHHHHHhcCCeEEEECcccccc
Confidence 22 232 355 889988885532 23 5555 55567999999999999999999999999999877
Q ss_pred cccCCcc--CCC-------CCCc-EEEEcCcCcCccC-cEEEEEEeCC
Q 018300 293 VAASVVA--DPF-------KYCD-VVTTTTHKSLRGP-RGGMIFFKKD 329 (358)
Q Consensus 293 ~~~g~~~--~pl-------~gaD-iv~~S~hK~L~Gp-~GG~I~~~~~ 329 (358)
.+.+.+| +++ .|+| +++.|+||+|++. ++.+|..+.+
T Consensus 355 ~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~ 402 (755)
T PRK15029 355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREG 402 (755)
T ss_pred ccCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCC
Confidence 6655554 444 3788 9999999999887 4578877654
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-14 Score=144.91 Aligned_cols=189 Identities=16% Similarity=0.182 Sum_probs=128.0
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCc-HHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~-~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pG 192 (358)
.+|.+.+++...+. +|..|+.+.|.+.|+ +...+ ++++++++++.+. .|++++|..++..++.++.++|
T Consensus 124 ~~~~i~ea~~~al~-~~G~g~~g~r~~yg~~~~~~~----Lee~La~~~~~~~-----~i~~s~G~~a~~sai~a~~~~g 193 (481)
T PLN02822 124 GNEKIKESCTSALE-KYGVGSCGPRGFYGTIDVHLD----CETKIAKFLGTPD-----SILYSYGLSTIFSVIPAFCKKG 193 (481)
T ss_pred CCHHHHHHHHHHHH-HhCCCCcccCccccCHHHHHH----HHHHHHHHhCCCC-----EEEECCHHHHHHHHHHHhCCCC
Confidence 58999999988765 454577776654444 32333 4566899999765 3667788889999999999999
Q ss_pred CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh--------cCC-eEEEEcC--CC
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--------FRP-KLIIAGA--SA 261 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~--------~~~-klIi~~~--s~ 261 (358)
|.|+.....|. +.. ..+.+.+. +++.++.+ |.++++..+++ .++ ++|+++. ++
T Consensus 194 d~Ii~d~~~H~---s~~-----~~~~ls~~--~~~~~~~n------d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~ 257 (481)
T PLN02822 194 DIIVADEGVHW---GIQ-----NGLYLSRS--TIVYFKHN------DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQN 257 (481)
T ss_pred CEEEEeCCccH---HHH-----HHHHHcCC--eEEEECCC------CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCC
Confidence 99997654332 211 13344554 34444433 34444443321 124 6777754 34
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEEecccccccccc-C--Ccc-CCC--CCCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-S--VVA-DPF--KYCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 262 ~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~-g--~~~-~pl--~gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
.|...|+++|+++|++||+++++|++|+.|.... | ... ..+ +..|++++|++|+++ ..||+++++++
T Consensus 258 ~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg-~~GG~i~g~~~ 330 (481)
T PLN02822 258 SGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALA-TEGGFCTGSAR 330 (481)
T ss_pred CCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhh-hCCeEEEcCHH
Confidence 6788999999999999999999999999886531 1 110 112 257899999999984 66799998873
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-15 Score=143.51 Aligned_cols=194 Identities=21% Similarity=0.255 Sum_probs=131.7
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al 188 (358)
-|+| ++|+++++|..... |.. -|++.+++.++|+ +++++||.+.. +++.|||.||..++.++
T Consensus 3 ~SD~-~~~~m~~a~~~a~~-----gd~---~Yg~D~~~~~l~~----~i~~l~g~e~a-----~f~~sGT~An~~al~~~ 64 (290)
T PF01212_consen 3 RSDT-PTPAMLEAMAAANV-----GDD---AYGEDPTTARLEE----RIAELFGKEAA-----LFVPSGTMANQLALRAH 64 (290)
T ss_dssp S-SS-S-HHEEHHHHHTTS-----B-C---CTTSSHHHHHHHH----HHHHHHTSSEE-----EEESSHHHHHHHHHHHH
T ss_pred CccC-CCHHHHHHHHcccc-----CCc---ccCCChhHHHHHH----HHHHHcCCCEE-----EEeCCCChHHHHHHHHH
Confidence 3677 88999999955322 222 2667777777665 47889999873 67789999999999999
Q ss_pred ccCCCEEEecCCCCCcccccccccchhcc-ccCCceEEEEeceecCCCCCCCHHHHHHHhhh-----cCCeEEEEcCCC-
Q 018300 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRV-SGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-----FRPKLIIAGASA- 261 (358)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~-----~~~klIi~~~s~- 261 (358)
++|++.|++.+. +|+.. .....+ .+.|. ++++++.+ +.+.+|+++|++.+.. .+|++|.++.++
T Consensus 65 ~~~~~~vi~~~~---aHi~~---~E~ga~~~~~G~--~~~~l~~~-~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~ 135 (290)
T PF01212_consen 65 LRPGESVICADT---AHIHF---DETGAIEELSGA--KLIPLPSD-DDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTE 135 (290)
T ss_dssp HHTTEEEEEETT---EHHHH---SSTTHHHHHTTC--EEEEEBEC-TGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBT
T ss_pred HhcCCceecccc---ceeee---eccchhhHhcCc--EEEECCCc-ccCCCCHHHHHHHhhhccccCCCccEEEEEecCc
Confidence 999999999764 55421 111222 35665 44554443 2289999999999876 346888886554
Q ss_pred C--CCCCC---HHHHHHHHHHcCCEEEEeccccccccc-cCCccCCC-CCCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 262 Y--PRDFD---YPRMRQIADAVGALLMMDMAHISGLVA-ASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 262 ~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~-~g~~~~pl-~gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
. |+..+ +++|.++||++|++|+.|+|-...... .+..+..+ .++|++++|++|.+..|-|++|+++++
T Consensus 136 ~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~Gavl~~~~~ 210 (290)
T PF01212_consen 136 LAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPGGAVLAGNKE 210 (290)
T ss_dssp TTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSSEEEEEESHH
T ss_pred CCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEcccccccceEEEechH
Confidence 4 66654 667788999999999999985432211 11111111 289999999999999999999999986
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-14 Score=141.10 Aligned_cols=203 Identities=25% Similarity=0.279 Sum_probs=135.6
Q ss_pred cccccCCCC----cHHHHHHHhhhhhcccCCCCCCCcCCCC-cHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHH
Q 018300 106 ELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (358)
Q Consensus 106 ~lias~n~~----s~~V~~al~~~l~~~~~~G~pg~r~~~G-~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A 180 (358)
....|++|. +|.|++++...+. +|..|..++|...| .+...++ ++++++++|.+. .+.++||+.|
T Consensus 48 ~~~~sn~ylgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~g~~~~~~~L----e~~la~~~g~~~-----~l~~~sG~~a 117 (402)
T TIGR01821 48 TVWCSNDYLGMGQHPEVLQAMHETLD-KYGAGAGGTRNISGTNIPHVEL----EAELADLHGKES-----ALVFTSGYVA 117 (402)
T ss_pred EEeEccCcCCCCCCHHHHHHHHHHHH-HcCCCCcchhhhhCCcHHHHHH----HHHHHHHhCCCe-----EEEECchHHH
Confidence 345788885 8899999987764 45455555554434 3333444 455889999654 4778999999
Q ss_pred HHHHHHHhcc--CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh---cCCeEE
Q 018300 181 NFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLI 255 (358)
Q Consensus 181 ~~~a~~all~--pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~---~~~klI 255 (358)
|..++..+.+ +||.|+.....|++... .+...+..+ ..++ ..|++++++.++. .++++|
T Consensus 118 n~~ai~~l~~~~~~~~v~~~~~~h~s~~~--------~~~~~g~~~--~~~~------~~d~~~l~~~l~~~~~~~~~~v 181 (402)
T TIGR01821 118 NDATLATLAKIIPGCVIFSDELNHASMIE--------GIRHSGAEK--FIFR------HNDVAHLEKLLQSVDPNRPKII 181 (402)
T ss_pred HHHHHHHhhCCCCCCEEEEcchHhHHHHH--------HHHHcCCeE--EEEC------CCCHHHHHHHHHhccCCCCeEE
Confidence 9999988754 78888776554433211 223344422 2221 2477888877753 256888
Q ss_pred EEcCCC--CCCCCCHHHHHHHHHHcCCEEEEecccccccccc---CCcc-CCC-CCCcEEEEcCcCcCccCcEEEEEEeC
Q 018300 256 IAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA---SVVA-DPF-KYCDVVTTTTHKSLRGPRGGMIFFKK 328 (358)
Q Consensus 256 i~~~s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~---g~~~-~pl-~gaDiv~~S~hK~L~Gp~GG~I~~~~ 328 (358)
+++.++ .|...|+++|.++|+++|+++++|++|+.|+... +... ..+ +..|+++.|++|+|++ .||++++++
T Consensus 182 ~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~-~GG~i~~~~ 260 (402)
T TIGR01821 182 AFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGV-VGGYIAASR 260 (402)
T ss_pred EEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhcc-CCceeecCH
Confidence 887544 4678899999999999999999999999886432 1111 111 1468999999999854 568888776
Q ss_pred CCCchhHHHHHHh
Q 018300 329 DPVLGVELESAIN 341 (358)
Q Consensus 329 ~~~~~~~~~~~i~ 341 (358)
++.+.+.
T Consensus 261 ------~~~~~l~ 267 (402)
T TIGR01821 261 ------KLIDAIR 267 (402)
T ss_pred ------HHHHHHH
Confidence 4555554
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-13 Score=136.94 Aligned_cols=224 Identities=16% Similarity=0.150 Sum_probs=142.7
Q ss_pred ccccChHHHHHHHHHHHHh-----hhcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHH
Q 018300 83 LGEADPEVCEIITKEKERQ-----FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK 155 (358)
Q Consensus 83 l~~~d~~~~~~i~~e~~~~-----~~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~ 155 (358)
+..+.+.++..+.+..... +..++|-.+++ .+++.+++++...+... ..|+. ..|.+ ++.+.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~--~~Y~~---~~G~~---~lr~~ia~ 76 (396)
T PRK09147 5 LDRLQPYPFEKLRALFAGVTPPADLPPISLSIGEPKHPTPAFIKDALAANLDGL--ASYPT---TAGLP---ALREAIAA 76 (396)
T ss_pred hhcCCcchHHHHHHHHHhhhhccCCCeEecCCCCCCCCCCHHHHHHHHHHhhhh--cCCCC---CCCCH---HHHHHHHH
Confidence 4445555555444444322 24444443333 45788888887655321 23433 22333 46666677
Q ss_pred HHHHHcCCC---CCCCcceEEeCCCH-HHHHHHHHHhccC---CCEEEecCCCCCcccccccccchhccccCCceEEEEe
Q 018300 156 RALAAFNLD---ENKWGVNVQPLSGS-PANFEVYTAILKP---HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP 228 (358)
Q Consensus 156 ~la~lfg~~---~~~~~v~V~~~SGt-~A~~~a~~all~p---GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~ 228 (358)
++.+.+|.+ ++ -+|.+++|+ +|+..++.++++| ||+|++++|.+.++.. .....|. ++++
T Consensus 77 ~~~~~~g~~~~~~~---~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~~~~ 143 (396)
T PRK09147 77 WLERRYGLPALDPA---TQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEG--------AALLAGA--EPYF 143 (396)
T ss_pred HHHHHhCCCcCCcc---ceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHH--------HHHhcCC--EEEE
Confidence 777777854 32 146666765 5999999999999 9999999886655421 2234565 4555
Q ss_pred ceecCCC-CCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CC---CHHHHHHHHHHcCCEEEEeccccccccccCCcc--C
Q 018300 229 YRLDEST-GLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--D 300 (358)
Q Consensus 229 ~~~~~~~-~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~ 300 (358)
+++++++ ..+|++++++.+.. ++|+|++..++||+ .. ++++|.++|++++++|++|+++. .+.+.+..+ .
T Consensus 144 vp~~~~~~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~ 221 (396)
T PRK09147 144 LNCDPANNFAPDFDAVPAEVWA-RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYS-EIYFDEAAPPLG 221 (396)
T ss_pred eccCccccCccCHHHHHHHHhh-ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeecccc-ccccCCCCCCch
Confidence 5566443 37999999887653 78988887667664 44 47788899999999999999976 333333111 1
Q ss_pred CC----C-CC---c--EEEEcCcCc--CccCcEEEEEEeCC
Q 018300 301 PF----K-YC---D--VVTTTTHKS--LRGPRGGMIFFKKD 329 (358)
Q Consensus 301 pl----~-ga---D--iv~~S~hK~--L~Gp~GG~I~~~~~ 329 (358)
.+ . +. | +++.|++|. ++|.|.|+++++++
T Consensus 222 ~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~ 262 (396)
T PRK09147 222 LLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAA 262 (396)
T ss_pred hhhhccccCccccccEEEEeccccccCCccceeeeecCCHH
Confidence 11 0 11 2 788999995 57889999998763
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.4e-14 Score=139.76 Aligned_cols=196 Identities=20% Similarity=0.225 Sum_probs=132.8
Q ss_pred cccccCCCC----cHHHHHHHhhhhhcccCCCCCCCcCCCC-cHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHH
Q 018300 106 ELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (358)
Q Consensus 106 ~lias~n~~----s~~V~~al~~~l~~~~~~G~pg~r~~~G-~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A 180 (358)
....+++|. +|.|++++...+. ++..+..+.|...| .+...++ ++++++++|.+. .++++||+.|
T Consensus 48 ~~~~sn~ylgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~~~~~~~~~l----e~~la~~~g~~~-----~~~~~SG~~A 117 (406)
T PRK13393 48 TVWCSNDYLGMGQHPAVLAAMHEALD-TCGAGAGGTRNISGTNHYHVLL----EAELADLHGKEA-----ALLFTSGYVS 117 (406)
T ss_pred EEeecccccCCCCCHHHHHHHHHHHH-HcCCCCcccccccCChHHHHHH----HHHHHHHhCCCc-----EEEeCCcHHH
Confidence 345788885 8899999988765 45444444554334 3333344 456889999754 4778999999
Q ss_pred HHHHHHHhcc--CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh---cCCeEE
Q 018300 181 NFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLI 255 (358)
Q Consensus 181 ~~~a~~all~--pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~---~~~klI 255 (358)
|..++.++.+ +||.|+..+..|++.+. .+...+..+ ..++ ..|++++++.+.. .++++|
T Consensus 118 n~~ai~~l~~~~~g~~I~~~~~~H~s~~~--------~~~~~g~~~--~~~~------~~d~~~l~~~l~~~~~~~~~~v 181 (406)
T PRK13393 118 NWAALSTLGSRLPGCVILSDELNHASMIE--------GIRHSRAEK--RIFR------HNDPADLERKLSDLDPHRPKLV 181 (406)
T ss_pred HHHHHHHhhcCCCCCEEEEccchhHHHHH--------HHHHcCCeE--EEeC------CCCHHHHHHHHHhccCCCCEEE
Confidence 9999998755 88888877766654321 223344422 2222 2477778777653 246788
Q ss_pred EEcCCC--CCCCCCHHHHHHHHHHcCCEEEEecccccccccc-CC--cc-CCCC-CCcEEEEcCcCcCccCcEEEEEEeC
Q 018300 256 IAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV--VA-DPFK-YCDVVTTTTHKSLRGPRGGMIFFKK 328 (358)
Q Consensus 256 i~~~s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~--~~-~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~ 328 (358)
+++... .|...|+++|.++|+++|+++++|++|+.|+... |. .. ..+. ..|+++.|+.|.++. .||++++++
T Consensus 182 ~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~-~GG~~~~~~ 260 (406)
T PRK13393 182 AFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGV-MGGYITGSA 260 (406)
T ss_pred EEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcc-cCceeeCCH
Confidence 776543 5678899999999999999999999999887532 11 10 1111 468898999999864 578888766
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-14 Score=142.48 Aligned_cols=169 Identities=18% Similarity=0.191 Sum_probs=120.1
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCc
Q 018300 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (358)
Q Consensus 143 ~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (358)
++....+|+ .+++++|.+. .+.+.||+.|+..++.++++|||+|++.++.|+++..... ..+...|.
T Consensus 82 ~Pt~~~Le~----~lA~leg~~~-----~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~----~~l~~~Gi 148 (427)
T PRK07049 82 HPNSEIVED----RLAVYEGAES-----AALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLA----KTFRNFGV 148 (427)
T ss_pred CcCHHHHHH----HHHHHhCCCc-----EEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHH----HHHHhcCc
Confidence 444556665 4788998775 4678899999999999999999999999988877632100 01123354
Q ss_pred eEEEEeceecCCCCCCCHHHHHHHhh----hcCCeEEEEcCCCCC--CCCCHHHHHHHHHH------cCCEEEEeccccc
Q 018300 223 YFESMPYRLDESTGLVDYDMLEKTAI----LFRPKLIIAGASAYP--RDFDYPRMRQIADA------VGALLMMDMAHIS 290 (358)
Q Consensus 223 ~~~~~~~~~~~~~~~iD~d~le~~i~----~~~~klIi~~~s~~~--~~~dl~~I~~ia~e------~g~~livD~Ah~~ 290 (358)
+++.+. + ..|++++++.+. ..++|+|++..++|| ...|+++|.+++++ +++++++|++...
T Consensus 149 --~~v~~~-~----~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~ 221 (427)
T PRK07049 149 --GAVGFA-D----GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLG 221 (427)
T ss_pred --EEEEEe-C----CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccc
Confidence 334432 1 256777776653 246899999877776 47899999999988 8999999998442
Q ss_pred cccccCCccCCCC-CCcEEEEcCcCcCcc---CcEEEEEEeCCCCchhHHHHHHhh
Q 018300 291 GLVAASVVADPFK-YCDVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 291 Gl~~~g~~~~pl~-gaDiv~~S~hK~L~G---p~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
.+ ...|++ ++|+++.|++|+++| .++|+++.++ ++.+++..
T Consensus 222 ~~-----~~~pl~~g~divv~S~SK~~gG~~glr~G~vv~~~------~l~~~l~~ 266 (427)
T PRK07049 222 PV-----FQKPLEHGADLSVYSLTKYVGGHSDLVAGAVLGRK------ALIRQVRA 266 (427)
T ss_pred cc-----cCCccccCCCEEEEcCceeecCCCCcEEEEEECCH------HHHHHHHH
Confidence 21 234566 899999999999975 4689998776 45555543
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=138.06 Aligned_cols=200 Identities=20% Similarity=0.295 Sum_probs=116.0
Q ss_pred HHHHHHhhhhh----cccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCC
Q 018300 117 AVMEAVGSCLT----NKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (358)
Q Consensus 117 ~V~~al~~~l~----~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pG 192 (358)
.|++|+...=. -..+.||.+ +..-.|.+|+. +++.||++.+- |..++.|||.|+..++.++++||
T Consensus 28 KVL~Af~~~~vs~~hf~~tTGYGY-----~D~GRd~le~i----yA~vfgaE~AL--VRpq~vSGTHAi~~~Lfg~LrpG 96 (403)
T PF06838_consen 28 KVLKAFQENRVSDSHFAGTTGYGY-----DDIGRDKLERI----YADVFGAEDAL--VRPQFVSGTHAIALALFGVLRPG 96 (403)
T ss_dssp HHHHHHHHTT--GGGCS---TT-T-----T-HHHHHHHHH----HHHHCT-SEEE--EETTS-SHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHcCCChhhcCCCCcCCC-----CCccHHHHHHH----HHHHhCchhhh--hcccccchHHHHHHHHHhcCCCC
Confidence 67888754311 122344432 33345667764 78999999852 23345699999999999999999
Q ss_pred CEEEecCC-CC---------CcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-
Q 018300 193 DRIMGLDL-PH---------GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA- 261 (358)
Q Consensus 193 D~Vl~~~~-~~---------ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~- 261 (358)
|+++...- +| .++ ..+ .+.-.|..++ .+++. +++.+|++.+++.++ .++|+|.+.-|-
T Consensus 97 D~ll~~tG~PYDTL~~VIG~~g~-~~G------SL~e~Gi~Y~--~v~L~-~dg~~D~~~i~~~~~-~~tk~v~IQRSrG 165 (403)
T PF06838_consen 97 DELLSITGKPYDTLEEVIGIRGN-GPG------SLKEFGIKYR--EVPLT-EDGTIDWEAIKKALK-PNTKMVLIQRSRG 165 (403)
T ss_dssp -EEEESSSS--CCHHHHHTSSSS-SSS------STGGGT-EEE--E--B--TTSSB-HHHHHHHHH-TTEEEEEEE-S-T
T ss_pred CeEEEcCCCchhhHHHHhCCCCC-CCC------ChHHhCceeE--EEeec-CCCCcCHHHHHHhhc-cCceEEEEecCCC
Confidence 99997541 11 111 111 1223455444 44465 358999999999987 478999986543
Q ss_pred CCC-----CCCHHHHHHHHHHc--CCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCcCcc---CcEEEEEEeCCC
Q 018300 262 YPR-----DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRG---PRGGMIFFKKDP 330 (358)
Q Consensus 262 ~~~-----~~dl~~I~~ia~e~--g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~G---p~GG~I~~~~~~ 330 (358)
|.. +.+++++++++|+. +++++||+|+. .++- ...|.+ |||++.+|+-|+.+| |.||+|++++
T Consensus 166 Ys~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYG-EFvE---~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~-- 239 (403)
T PF06838_consen 166 YSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYG-EFVE---TQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRK-- 239 (403)
T ss_dssp TSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTT-TTTS---SS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESH--
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcc-eecc---ccCccccchhheeccceeCCCCCccCcCCEEechH--
Confidence 432 23455666666665 78999999954 2221 124556 999999999999865 7899999998
Q ss_pred CchhHHHHHHhh-ccCCcc
Q 018300 331 VLGVELESAINN-AVFPGL 348 (358)
Q Consensus 331 ~~~~~~~~~i~~-~~f~g~ 348 (358)
++-++... ..-||+
T Consensus 240 ----~lVe~~a~RLTaPGi 254 (403)
T PF06838_consen 240 ----DLVERAAYRLTAPGI 254 (403)
T ss_dssp ----HHHHHHHHHHS-TTT
T ss_pred ----HHHHHHHhhhcCCcc
Confidence 45555443 344554
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-13 Score=135.28 Aligned_cols=226 Identities=16% Similarity=0.114 Sum_probs=140.4
Q ss_pred cccccccChHHHHHHHHHHHH----hhhcccccccC--CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHH
Q 018300 80 DYSLGEADPEVCEIITKEKER----QFKSLELIASE--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 153 (358)
Q Consensus 80 ~~~l~~~d~~~~~~i~~e~~~----~~~~i~lias~--n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~ 153 (358)
++++...++..+..+.+...+ ...-+++-..+ ..+++.+.+++...+.+.. ..|+.. .| ...+++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~~---~g---~~~lr~~i 77 (393)
T PRK05764 5 SKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEPDFDTPEHIKEAAIEALDDGK-TKYTPA---AG---IPELREAI 77 (393)
T ss_pred hhhhhhcCchHHHHHHHHHHHHHhccCCEEEeCCCCCCCCCCHHHHHHHHHHHhcCC-CCcCCC---CC---hHHHHHHH
Confidence 455555556554333322221 12333443222 2346888888877665422 223321 12 23566666
Q ss_pred HHHHHHHcCC--CCCCCcceEEeCC-CHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEece
Q 018300 154 QKRALAAFNL--DENKWGVNVQPLS-GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (358)
Q Consensus 154 ~~~la~lfg~--~~~~~~v~V~~~S-Gt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~ 230 (358)
.+++.+.+|. +++ ++.+++ +++|+..++.+++++||+|+++++.|.++.. .+...|. ++.+++
T Consensus 78 a~~~~~~~~~~~~~~----~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~ 143 (393)
T PRK05764 78 AAKLKRDNGLDYDPS----QVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPE--------MVKLAGG--VPVFVP 143 (393)
T ss_pred HHHHHHHhCCCCCHH----HEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHH--------HHHHcCC--EEEEEe
Confidence 6666665554 332 344555 4679999999999999999999987665421 2234565 445555
Q ss_pred ecCC-CCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCC---CHHHHHHHHHHcCCEEEEeccccccccccCCc-cC--C
Q 018300 231 LDES-TGLVDYDMLEKTAILFRPKLIIAGASAYP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV-AD--P 301 (358)
Q Consensus 231 ~~~~-~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~~--p 301 (358)
.+++ +..+|++++++.++. ++++|++..+++| ... ++++|.++|+++|+++++|++|. .+...+.. +. .
T Consensus 144 ~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~ 221 (393)
T PRK05764 144 TGEENGFKLTVEQLEAAITP-KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYE-KLVYDGAEFTSIAS 221 (393)
T ss_pred cCcccCCcCCHHHHHHhhCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEecccc-ceeeCCCCcccHHH
Confidence 5533 347899999998753 6788877666654 343 48899999999999999999976 33332221 11 1
Q ss_pred C--C--CCcEEEEcCcCcC--ccCcEEEEEEeC
Q 018300 302 F--K--YCDVVTTTTHKSL--RGPRGGMIFFKK 328 (358)
Q Consensus 302 l--~--gaDiv~~S~hK~L--~Gp~GG~I~~~~ 328 (358)
+ + +.++++.|++|++ +|.|.|+++.++
T Consensus 222 ~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~ 254 (393)
T PRK05764 222 LSPELRDRTITVNGFSKAYAMTGWRLGYAAGPK 254 (393)
T ss_pred cCCCCcCCEEEEecCcccccCccceeEEEecCH
Confidence 1 2 3568899999986 566779999776
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.8e-14 Score=139.40 Aligned_cols=196 Identities=24% Similarity=0.276 Sum_probs=129.7
Q ss_pred cccccCCCC----cHHHHHHHhhhhhcccCCCCCCCcCCCC-cHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHH
Q 018300 106 ELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (358)
Q Consensus 106 ~lias~n~~----s~~V~~al~~~l~~~~~~G~pg~r~~~G-~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A 180 (358)
....+++|. +|.|++++...+. ++..+..++|.+.| .+...++| +.+++++|.+. .++++||+.|
T Consensus 49 ~~~~s~dylgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~g~~~~~~~l~----~~la~~~g~~~-----~~~~~sG~~a 118 (407)
T PRK09064 49 TVWCSNDYLGMGQHPKVIEAMIEALD-RCGAGAGGTRNISGTNHYHVELE----RELADLHGKEA-----ALVFTSGYVS 118 (407)
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHH-HcCCCCCCcCcCccCHHHHHHHH----HHHHHHhCCCc-----EEEECcHHHH
Confidence 345788775 8899999987664 45444444554333 44444444 45788998643 4778999999
Q ss_pred HHHHHHHhcc--CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh---cCCeEE
Q 018300 181 NFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLI 255 (358)
Q Consensus 181 ~~~a~~all~--pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~---~~~klI 255 (358)
|..++..+.. +++.|+.....|++... .+...+..+ ..++ ..|+++++++++. .++++|
T Consensus 119 n~~ai~~l~~~~~~~~i~~~~~~h~s~~~--------~~~~~~~~~--~~~~------~~d~~~le~~l~~~~~~~~~~v 182 (407)
T PRK09064 119 NDATLSTLAKLIPDCVIFSDELNHASMIE--------GIRRSRCEK--HIFR------HNDVAHLEELLAAADPDRPKLI 182 (407)
T ss_pred HHHHHHHHhCCCCCCEEEEeCcchHHHHH--------HHHHcCCcE--EEEC------CCCHHHHHHHHHhccCCCCeEE
Confidence 9999887754 78777766544432211 222334322 2222 2477888887753 357888
Q ss_pred EEcCCC--CCCCCCHHHHHHHHHHcCCEEEEecccccccccc-CC-cc--CCC-CCCcEEEEcCcCcCccCcEEEEEEeC
Q 018300 256 IAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV-VA--DPF-KYCDVVTTTTHKSLRGPRGGMIFFKK 328 (358)
Q Consensus 256 i~~~s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~-~~--~pl-~gaDiv~~S~hK~L~Gp~GG~I~~~~ 328 (358)
++.... .|...|+++|.++|+++|++|++|++|+.|+... |. .. ..+ +..|+++.|++|.| |..||++++++
T Consensus 183 ~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~-g~~GG~~~~~~ 261 (407)
T PRK09064 183 AFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAF-GVMGGYIAGSA 261 (407)
T ss_pred EEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhh-hccCceEecCH
Confidence 886544 3567899999999999999999999999775421 11 11 112 24689999999987 45679988876
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-14 Score=138.73 Aligned_cols=196 Identities=17% Similarity=0.125 Sum_probs=130.3
Q ss_pred CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhcc
Q 018300 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILK 190 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~ 190 (358)
..+++.+++++....... .+|+. .. ..+ .|+.++++++++++ +|.+++|+ +++..++.++++
T Consensus 31 ~~~~~~~~~a~~~~~~~~--~~y~~------~~-~~~----lr~~ia~~~~~~~~----~i~~~~G~~~~l~~~~~~l~~ 93 (346)
T TIGR01141 31 FGPPPKAKEALRAEADKL--HRYPD------PD-PAE----LKQALADYYGVDPE----QILLGNGSDEIIELLIRAFLE 93 (346)
T ss_pred CCCCHHHHHHHHHhHHHh--hcCCC------CC-HHH----HHHHHHHHhCcChH----HEEEcCCHHHHHHHHHHHhcC
Confidence 346888999998764322 12322 11 123 45557889998764 45566665 588888888999
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCH
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDY 268 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl 268 (358)
+||+|+++++.|..+. ......|. ++..+++++ ++.+|++++++.+. .++++|++..+++ |...+.
T Consensus 94 ~gd~v~~~~p~y~~~~--------~~~~~~g~--~~~~~~~~~-~~~~d~~~l~~~~~-~~~~~v~l~~p~NptG~~~~~ 161 (346)
T TIGR01141 94 PGDAVLVPPPTYSMYE--------ISAKIHGA--EVVKVPLDE-DGQLDLEDILVAID-DKPKLVFLCSPNNPTGNLLSR 161 (346)
T ss_pred CCCEEEEcCCCHHHHH--------HHHHHcCC--eEEEeccCC-CCCCCHHHHHHhcC-CCCCEEEEeCCCCCCCCCCCH
Confidence 9999999987554321 12234465 445555654 46799999999764 3788888765555 458899
Q ss_pred HHHHHHHHHc--CCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 269 PRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 269 ~~I~~ia~e~--g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+++.++|+.+ |+++++|++|. ++...+.....+. ..++++.|++|++ +|+|.|+++.++ ++.+++..
T Consensus 162 ~~~~~l~~~~~~~~~ii~D~~y~-~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~------~~~~~~~~ 234 (346)
T TIGR01141 162 SDIEAVLERTPEDALVVVDEAYG-EFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANA------EIIDALNK 234 (346)
T ss_pred HHHHHHHHhCCCCcEEEEECchh-hhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCH------HHHHHHHh
Confidence 9999999987 99999999987 3332211111111 2347788999998 466779999876 56666654
Q ss_pred c
Q 018300 343 A 343 (358)
Q Consensus 343 ~ 343 (358)
.
T Consensus 235 ~ 235 (346)
T TIGR01141 235 V 235 (346)
T ss_pred c
Confidence 3
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-13 Score=134.82 Aligned_cols=231 Identities=17% Similarity=0.138 Sum_probs=139.9
Q ss_pred ccccccChHHHHHHHHHHH---Hh-hhcccccc--cCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKE---RQ-FKSLELIA--SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQ 154 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~---~~-~~~i~lia--s~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~ 154 (358)
+++....++.+..+.+... +. ..-++|-. ++..+++.+++++...+......+|+. ..|.. .+++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~lR~~ia 81 (403)
T PRK08636 8 NKIKRLPKYVFAEVNELKMAARRAGEDIIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSV---SKGIY---KLRLAIC 81 (403)
T ss_pred HHHHhCCccHHHHHHHHHHHHHhcCCCEEEcCCcCCCCCCCHHHHHHHHHHhcCCccCCCCC---CCCCH---HHHHHHH
Confidence 3455556655544433322 11 23344432 222346667777665443222234443 23443 5666677
Q ss_pred HHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC
Q 018300 155 KRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (358)
Q Consensus 155 ~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~ 233 (358)
+++.+.+|.+.. ..-+|.+++|+. |+..++.++++|||+|++.+|.|.++.. .+...|. ++++++++.
T Consensus 82 ~~l~~~~~~~~~-~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~ 150 (403)
T PRK08636 82 NWYKRKYNVDLD-PETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQ--------AFILAGG--NVHKMPLEY 150 (403)
T ss_pred HHHHHHhCCCCC-CCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHhcCC--EEEEEeccc
Confidence 777777785421 101466777765 9999999999999999999987766432 2345565 444544532
Q ss_pred -CCCCCCHHHH----HHHhhh--cCCeEEEEcCCCCCC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCC-ccC
Q 018300 234 -STGLVDYDML----EKTAIL--FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VAD 300 (358)
Q Consensus 234 -~~~~iD~d~l----e~~i~~--~~~klIi~~~s~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~~ 300 (358)
++..+|.+++ ++.++. .++++|++..++||+ ..+ +++|.++|+++++++++|.++. .+.+.+. .+.
T Consensus 151 ~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~-~l~~~~~~~~~ 229 (403)
T PRK08636 151 NEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYA-DITFDGYKTPS 229 (403)
T ss_pred cccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccch-hhccCCCCCCC
Confidence 2357887754 555543 357788777666653 444 6788899999999999999865 4443332 111
Q ss_pred --CCCC-Cc--EEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 301 --PFKY-CD--VVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 301 --pl~g-aD--iv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
.++. .| +++.|++|++ +|.|.|+++.+++
T Consensus 230 ~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~~ 265 (403)
T PRK08636 230 ILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNKK 265 (403)
T ss_pred hhcCCCccccEEEEEecccccCCccceeeeeeCCHH
Confidence 1222 23 4578999997 7889999998764
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.9e-15 Score=143.63 Aligned_cols=196 Identities=14% Similarity=0.128 Sum_probs=121.3
Q ss_pred ccccccCCCCcHHHHHHHhhhhhcccCCCCCCCc-CCCC---cHHHHHHHHHHHHHHHHHcCCCCCCCcceEEe-CCCHH
Q 018300 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKR-YYGG---NEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGSP 179 (358)
Q Consensus 105 i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r-~~~G---~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~-~SGt~ 179 (358)
+++.|++..+|+.|++++...+.+ +. ++++. |..+ .++.+.+++ +|+.++++||++.+ . ..+++ .|||.
T Consensus 1 ~~~~pGp~~~p~~V~~a~~~~~~~-~~--~~~rg~~~~~~r~~~~~~~~~~-~r~~l~~l~~~~~~-~-~vvf~~gs~T~ 74 (355)
T cd00611 1 INFSAGPAALPEEVLEQAQKELLD-FN--GLGMSVMEMSHRSKDFEAIVNE-AESDLRELLNIPDN-Y-KVLFLQGGATG 74 (355)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhh-cc--cCCccccccCCCCHHHHHHHHH-HHHHHHHHhCCCCC-c-eEEEEcCCchH
Confidence 468899999999999999988754 21 23321 2222 455566665 89999999998432 2 12333 45889
Q ss_pred HHHHHHHHhcc---CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCH-HHHHHHhhhcCCeEE
Q 018300 180 ANFEVYTAILK---PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY-DMLEKTAILFRPKLI 255 (358)
Q Consensus 180 A~~~a~~all~---pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~-d~le~~i~~~~~klI 255 (358)
|+.+++.++++ +||+|++ |.+.+.+. +..+..|..++.+. .+++....+. +..+..+. .++|+|
T Consensus 75 a~~~~~~~l~~~~~~~~~i~~------g~~~~~~~---~~a~~~g~~~~~~~--~~~~g~~~~~~~~~~~~~~-~~~~lV 142 (355)
T cd00611 75 QFAAVPLNLLGDKGTADYVVT------GAWSAKAA---KEAKRYGGVVVIVA--AKEEGKYTKIPDVETWDLA-PDAAYV 142 (355)
T ss_pred HHHHHHHhcCCCCCeEEEEEC------CHHHHHHH---HHHHhcCCCcEEEe--cccccCCCCCCCHhhcCCC-CCCCEE
Confidence 99999999987 5566654 22222211 11233455455554 3321112232 22222233 468888
Q ss_pred EEcCCC--CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 256 IAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 256 i~~~s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
.+.+.. +|.. + .++++.+|+++++|++|++|.. |..++..|++++|.||+| ||.| |+++.+++
T Consensus 143 ~~~h~~t~tG~~--~---~~i~~~~g~~~~VDa~qs~g~~-----~idv~~~~~~~ss~~K~l-GP~G~g~l~~~~~ 208 (355)
T cd00611 143 HYCSNETIHGVE--F---DEVPDTGGVPLVADMSSNILSR-----PIDVSKFGVIYAGAQKNL-GPAGVTVVIVRKD 208 (355)
T ss_pred EEeCCcccccEE--c---ceecccCCCeEEEEccccccCC-----CCCHHHhCEEEeeccccc-CCCceEEEEECHH
Confidence 775544 3443 2 2456669999999999998864 223335567778899976 7998 88888874
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-13 Score=137.63 Aligned_cols=196 Identities=14% Similarity=0.035 Sum_probs=128.3
Q ss_pred CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCC-HHHHHHHHHHhcc
Q 018300 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILK 190 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SG-t~A~~~a~~all~ 190 (358)
..+++.+.+++...+......+|+. ..|.+ ++++.+.+++....|.+.+ . -+|++++| ++|+..++.++++
T Consensus 68 ~~~~~~~~~a~~~al~~~~~~~Y~~---~~G~~---~lr~aia~~~~~~~~~~~~-~-~~v~it~G~~~al~l~~~~l~~ 139 (430)
T PLN00145 68 FRTAPEAEDAVAAALRSGKYNSYST---CVGLL---PARRAIAEYLSRDLPYELS-T-DDIYLTAGCAQAIEIIMSVLAQ 139 (430)
T ss_pred CCCCHHHHHHHHHHHHcCcCCCCCC---CccCH---HHHHHHHHHHhhccCCCCC-h-hhEEEeCCHHHHHHHHHHHhcC
Confidence 4568899999988776533334443 12332 4555555555444444321 1 14555655 5699999999999
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD 267 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d 267 (358)
|||+|+++++.|..+.. ...+.|.. +..+++.++ +..+|++++++.++. ++++|++..++|| ...+
T Consensus 140 ~Gd~Vlv~~P~y~~y~~--------~~~~~g~~--~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~P~NPtG~v~~ 208 (430)
T PLN00145 140 PGANILLPRPGYPLYEA--------RAVFSGLE--VRHFDLLPERGWEVDLEGVEALADE-NTVAMVIINPNNPCGSVYS 208 (430)
T ss_pred CCCEEEEcCCCCccHHH--------HHHHcCCE--EEEeeCCcccCCcCCHHHHHHHhCc-CceEEEEeCCCCCCCCCCC
Confidence 99999999986654322 22345654 444444433 457999999998764 6777777666665 4555
Q ss_pred ---HHHHHHHHHHcCCEEEEeccccccccccCCccCCC---CCC--cEEEEcCcCc--CccCcEEEEEEe
Q 018300 268 ---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYC--DVVTTTTHKS--LRGPRGGMIFFK 327 (358)
Q Consensus 268 ---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~ga--Div~~S~hK~--L~Gp~GG~I~~~ 327 (358)
+++|+++|+++|++|++|+++. .+.+.+....++ +.. =+++.|++|. ++|+|-|+++..
T Consensus 209 ~~~l~~i~~~a~~~~i~ii~De~Y~-~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~ 277 (430)
T PLN00145 209 YEHLAKIAETARKLGILVIADEVYD-HLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATC 277 (430)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccch-hhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEEEEEe
Confidence 7888899999999999999965 444433211222 221 2778899999 488899999974
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-13 Score=136.19 Aligned_cols=194 Identities=15% Similarity=0.128 Sum_probs=130.2
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceEEeCCC-HHHHHHHHHHhc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG-SPANFEVYTAIL 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~--~~~~~~v~V~~~SG-t~A~~~a~~all 189 (358)
..++.+.+++...+.+.. .+|+. ..|. .++++.+.+++.+.+|. +++ .+|.+++| ++|+..++.+++
T Consensus 41 ~~~~~~~~a~~~~~~~~~-~~Y~~---~~g~---~~lr~~ia~~l~~~~g~~~~~~---~~I~~t~G~~~al~~~~~~l~ 110 (387)
T PRK07683 41 PTPSHVKEAAKRAITENY-TSYTH---NAGL---LELRKAACNFVKDKYDLHYSPE---SEIIVTIGASEAIDIAFRTIL 110 (387)
T ss_pred CCCHHHHHHHHHHHhcCC-CCCCC---CCCC---HHHHHHHHHHHHHHhCCCCCCC---CcEEEeCChHHHHHHHHHHhC
Confidence 346788888887766432 23432 1233 35666666666655565 332 13555655 669999999999
Q ss_pred cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CC-
Q 018300 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF- 266 (358)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~- 266 (358)
++||+|+++++.+.++.. .+...|. ++++++.++++..+|.+++++.+.. ++|+|++..+++|+ ..
T Consensus 111 ~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~i~i~~p~NPtG~~~s 179 (387)
T PRK07683 111 EPGTEVILPAPIYPGYEP--------IIRLCGA--KPVFIDTRSTGFRLTAEALENAITE-KTRCVVLPYPSNPTGVTLS 179 (387)
T ss_pred CCCCEEEEcCCCccchHH--------HHHHcCC--EEEEeecCcccCCCCHHHHHHhcCc-CceEEEEeCCCCCCCcCCC
Confidence 999999999886655321 2334565 4556666655557899999998764 68888877666653 33
Q ss_pred --CHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC------CCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 267 --DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK------YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 267 --dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~------gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
++++|.++|+++|+++++|+++.. +.+.+.. .++. +-.+++.|++|.+ +|.|.|+++++++
T Consensus 180 ~~~~~~l~~~~~~~~~~ii~De~y~~-~~~~~~~-~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~ 250 (387)
T PRK07683 180 KEELQDIADVLKDKNIFVLSDEIYSE-LVYEQPH-TSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSY 250 (387)
T ss_pred HHHHHHHHHHHHHcCeEEEEeccccc-ceeCCCc-CChhhccCCcCCeEEEeeccccccCccceeEEEEcCHH
Confidence 478899999999999999999763 3333221 1221 2247789999997 5778899998874
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.1e-14 Score=136.96 Aligned_cols=192 Identities=18% Similarity=0.205 Sum_probs=123.5
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pG 192 (358)
.+||.+++++....... .+ |+..+...++|+ .+++++|.++. +.+.+|+.++..++.++++||
T Consensus 11 ~p~~~~~~a~~~~~~~~-------~~-Y~~~~~~~~L~~----~la~~~g~~~~-----~v~~~g~~a~~~~l~~~~~~g 73 (333)
T PRK10534 11 RPSRAMLEAMMAAPVGD-------DV-YGDDPTVNALQD----YAAELSGKEAA-----LFLPTGTQANLVALLSHCERG 73 (333)
T ss_pred CCCHHHHHHHHhccCCC-------cc-cCCCHHHHHHHH----HHHHHhCCCeE-----EEeCchHHHHHHHHHHhcCCC
Confidence 47899999986533221 12 222333445554 47889999772 566788889999998899999
Q ss_pred CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc-----CCeEEEEcCCCCCCCCC
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAYPRDFD 267 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~-----~~klIi~~~s~~~~~~d 267 (358)
|+|+++.+.|......+ .....+ ..+.++++++ +++.+|+++|++.+.+. ++++|++..+++|...+
T Consensus 74 d~vi~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~~G~v~~ 145 (333)
T PRK10534 74 EEYIVGQAAHNYLYEAG------GAAVLG-SIQPQPIDAA-ADGTLPLDKVAAKIKPDDIHFARTRLLSLENTHNGKVLP 145 (333)
T ss_pred CeeEEechhhhhHhcCC------chHHhc-CceEEeecCC-CCCCCCHHHHHHhhcccCcCcccceEEEEecCCCCeecC
Confidence 99998765442111100 011222 1244555555 35789999999987542 57888887677788777
Q ss_pred HH---HHHHHHHHcCCEEEEecccccccccc-CCccCCC-CCCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 268 YP---RMRQIADAVGALLMMDMAHISGLVAA-SVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 268 l~---~I~~ia~e~g~~livD~Ah~~Gl~~~-g~~~~pl-~gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
.+ +|.++|+++|++|++|+||..+.... +.....+ .+.|.++.|++|.++.+.||+++++++
T Consensus 146 ~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~~G~~~~~~~~ 212 (333)
T PRK10534 146 REYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRD 212 (333)
T ss_pred HHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCcccceEEcCHH
Confidence 55 55678999999999999987432111 1111111 246766778999887776767877663
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=140.97 Aligned_cols=194 Identities=15% Similarity=0.114 Sum_probs=129.0
Q ss_pred CCcHHHHHHHhhhhhcccCCCCC-CCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLP-GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP 191 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~p-g~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~p 191 (358)
..|..|++++.+.+.+....|.. ........++.+.+++ +++.++++|+.+.+ +.+.+...|||.|+.+++.+++++
T Consensus 2 ~~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~-~~~~l~~l~~~~~~-~~v~~~~gsgT~a~ea~~~nl~~~ 79 (349)
T TIGR01364 2 ALPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANE-AESDLRELLNIPDN-YEVLFLQGGATGQFAAVPLNLLAE 79 (349)
T ss_pred CCCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHH-HHHHHHHHhCCCCC-ceEEEEcCCchHHHHHHHHhcCCC
Confidence 46889999999887753322211 1123345666666666 79999999997432 224444456999999999999999
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceEEEEeceec-CCCCCCCHHHHHHHhhhcCCeEEEEcC--CCCCCCCCH
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAILFRPKLIIAGA--SAYPRDFDY 268 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~iD~d~le~~i~~~~~klIi~~~--s~~~~~~dl 268 (358)
||++++.. .|.+++.+. +.....|. +..+..+-. +....+|+++++. + .++++|.+.+ +++|...+
T Consensus 80 ~~~~l~i~---~G~fg~r~~---~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~v~~th~ETstGv~~~- 148 (349)
T TIGR01364 80 GKVADYIV---TGAWSKKAA---KEAKKYGV-VNVVASGKEGNYTKIPDPSTWEI--S-EDAAYVHYCANETIHGVEFR- 148 (349)
T ss_pred CCeEEEEE---CCHHHHHHH---HHHHHhCC-cEEEeccccCCCCCCCCHHhcCC--C-CCCCEEEEcCCCCcccEecc-
Confidence 99988875 366665542 22344565 444442211 1223567776652 2 3678886654 34565544
Q ss_pred HHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 269 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 269 ~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
++++.+++++++|+++++|.. |..++..|++++|.||+| ||.| |+++.+++
T Consensus 149 ----~l~~~~~~l~iVDavss~g~~-----~id~~~~d~~~~ssqK~l-gP~Glg~l~~s~~ 200 (349)
T TIGR01364 149 ----ELPDVKNAPLVADMSSNILSR-----PIDVSKFGLIYAGAQKNI-GPAGLTVVIVRKD 200 (349)
T ss_pred ----eecccCCCeEEEEccccccCc-----cCCHHHccEEEEeccccc-CCCceEEEEECHH
Confidence 677778999999999998864 233336789999999987 6998 88888774
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=135.92 Aligned_cols=195 Identities=17% Similarity=0.134 Sum_probs=125.4
Q ss_pred cccCCCC----cHHHHHHHhhhhhccc------CCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCC
Q 018300 108 IASENFT----SRAVMEAVGSCLTNKY------SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG 177 (358)
Q Consensus 108 ias~n~~----s~~V~~al~~~l~~~~------~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SG 177 (358)
..|++|. ++.+.+++...+.... ..|..|+|...|.. +.+++ +++.+++++|++. .+.++||
T Consensus 9 ~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~--~~~~~-~e~~la~~~~~~~-----~l~~~sG 80 (370)
T PRK05937 9 FVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPS--SLLDD-LEHKIAHFHGAPE-----AFIVPSG 80 (370)
T ss_pred eECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCCh--HHHHH-HHHHHHHHhCCCe-----EEEECCh
Confidence 3677775 6667666665544321 13445556555533 22333 5667999999975 3778999
Q ss_pred HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhcccc-CCceEEEEeceecCCCCCCCHHHHHHHhhhc-----C
Q 018300 178 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSG-TSIYFESMPYRLDESTGLVDYDMLEKTAILF-----R 251 (358)
Q Consensus 178 t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~-----~ 251 (358)
+.||..+...+.++||.|+.....|++.+. .+.. .+. .+.+ ..+|++++++.++.. +
T Consensus 81 ~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~--------~~~~~~~~---~~~~------~~~d~~~l~~~l~~~~~~~~~ 143 (370)
T PRK05937 81 YMANLGLCAHLSSVTDYVLWDEQVHISVVY--------SLSVISGW---HQSF------RHNDLDHLESLLESCRQRSFG 143 (370)
T ss_pred HHHHHHHHHHhCCCCCEEEEEhhhhHHHHH--------HHHHcCCc---eEEe------cCCCHHHHHHHHHhhhccCCC
Confidence 999987777767889998887766654322 1112 222 1222 256899999988632 2
Q ss_pred CeEEEEcCCC--CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCc----cCCCCCCcEEEEcCcCcCccCcEEEEE
Q 018300 252 PKLIIAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV----ADPFKYCDVVTTTTHKSLRGPRGGMIF 325 (358)
Q Consensus 252 ~klIi~~~s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~----~~pl~gaDiv~~S~hK~L~Gp~GG~I~ 325 (358)
+++|++...+ .|...|+++|.++|+++|+++++|++|+.|....... ...++..++++.|++|.+ ||.|+.++
T Consensus 144 ~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~-g~~G~~vl 222 (370)
T PRK05937 144 RIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKAL-GSMGAALL 222 (370)
T ss_pred cEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhh-hcCceEEE
Confidence 3455554433 5778999999999999999999999999886532110 001112346678899975 67787777
Q ss_pred EeC
Q 018300 326 FKK 328 (358)
Q Consensus 326 ~~~ 328 (358)
+.+
T Consensus 223 ~~~ 225 (370)
T PRK05937 223 SSS 225 (370)
T ss_pred cCH
Confidence 765
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.8e-13 Score=132.93 Aligned_cols=196 Identities=18% Similarity=0.151 Sum_probs=125.0
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pG 192 (358)
.++.+.+++...+.+....+|+. ..|.+ ++++.+.+++.+.+|..-+ ...++.+++|+ +++..++.++++||
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~lr~aia~~~~~~~g~~~~-~~~~i~~t~G~~~~l~~~~~~~~~~g 115 (395)
T PRK08175 43 TPPHIVEKLCEVAQRPDTHGYST---SRGIP---RLRRAISRWYQDRYDVDID-PESEAIVTIGSKEGLAHLMLATLDHG 115 (395)
T ss_pred CCHHHHHHHHHHHhCCCcCCCCC---CCCCH---HHHHHHHHHHHHHhCCCCC-CCCcEEEccCcHHHHHHHHHHhCCCC
Confidence 46667777766554332233432 22443 5666666777666665321 10146667776 58888888889999
Q ss_pred CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh--cCCeEEEEcCCCCC--CCCCH
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGASAYP--RDFDY 268 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~--~~~klIi~~~s~~~--~~~dl 268 (358)
|+|+++++.|..+.. .....|. ++.+++++++ ..+.+++++.++. .++|+|++..+++| ...+.
T Consensus 116 d~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~--~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~ 183 (395)
T PRK08175 116 DTVLVPNPSYPIHIY--------GAVIAGA--QVRSVPLVEG--VDFFNELERAIRESYPKPKMMILGFPSNPTAQCVEL 183 (395)
T ss_pred CEEEEcCCCCcchHH--------HHHHcCC--eEEEEecccC--CCcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCH
Confidence 999999886655421 1234555 4555556543 3357888887764 26788887755554 45665
Q ss_pred ---HHHHHHHHHcCCEEEEeccccccccccCCccCC---CCC-Cc--EEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 269 ---PRMRQIADAVGALLMMDMAHISGLVAASVVADP---FKY-CD--VVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 269 ---~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p---l~g-aD--iv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
++|.++|+++|+++++|.++. .+...+..+.+ +++ .| +++.|++|.| +|.|.|+++.+++
T Consensus 184 ~~~~~i~~~a~~~~i~ii~De~y~-~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~ 254 (395)
T PRK08175 184 EFFEKVVALAKRYDVLVVHDLAYA-DIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPE 254 (395)
T ss_pred HHHHHHHHHHHHcCcEEEEecchH-hhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCCHH
Confidence 788899999999999999975 44433322212 122 23 6689999997 5667899998763
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-13 Score=135.73 Aligned_cols=194 Identities=16% Similarity=0.028 Sum_probs=128.1
Q ss_pred CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceEEeCCC-HHHHHHHHHHh
Q 018300 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG-SPANFEVYTAI 188 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~--~~~~~~v~V~~~SG-t~A~~~a~~al 188 (358)
..+++.+++++.+.+......+|.. ..|.+ ++++.+.+++...+|. +++ +|++++| ++|+..++.++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~lr~~ia~~~~~~~g~~~~~~----~i~~t~G~~~al~~~~~~l 116 (409)
T PLN02656 47 FHTTHVAQEAVVDALQSNKFNGYAP---TVGLP---QARRAIAEYLSRDLPYKLSLD----DVFITSGCTQAIDVALSML 116 (409)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCC---CCCCH---HHHHHHHHHHHHhcCCCCCcc----cEEEeCChHHHHHHHHHHH
Confidence 3568999999987766543334432 12333 4555555556555554 332 4555555 56999999999
Q ss_pred ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--C
Q 018300 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--D 265 (358)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~ 265 (358)
++|||+|+++++.|..+.. .....|. ++..++++++ +..+|++++++.++. ++++|++..+++|+ .
T Consensus 117 ~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~i~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~P~NPtG~~ 185 (409)
T PLN02656 117 ARPGANILLPRPGFPIYEL--------CAAFRHL--EVRYVDLLPEKGWEVDLDAVEALADQ-NTVALVIINPGNPCGNV 185 (409)
T ss_pred hCCCCeEEEeCCCCCcHHH--------HHHHcCC--EEEEEeCCCcCCCCCCHHHHHHHhcc-CceEEEEECCCCCCCCC
Confidence 9999999999987654311 2234565 4444555433 347999999988754 56777665566654 3
Q ss_pred ---CCHHHHHHHHHHcCCEEEEeccccccccccCCccCCC---CCC--cEEEEcCcCcC--ccCcEEEEEEe
Q 018300 266 ---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYC--DVVTTTTHKSL--RGPRGGMIFFK 327 (358)
Q Consensus 266 ---~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~ga--Div~~S~hK~L--~Gp~GG~I~~~ 327 (358)
.++++|+++|+++|++|++|+++. ++.+.+....++ +.. =+++.|++|++ +|.|-|+++..
T Consensus 186 ~s~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~ 256 (409)
T PLN02656 186 YSYQHLKKIAETAEKLKILVIADEVYG-HLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTT 256 (409)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEehhhh-hcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEEEEe
Confidence 368899999999999999999965 555443211222 211 26788999984 78899999984
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=137.01 Aligned_cols=166 Identities=13% Similarity=0.071 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhc-cCCCEEEecCCCCCcccccccccchhccccCCceEE
Q 018300 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAIL-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE 225 (358)
Q Consensus 148 ~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all-~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~ 225 (358)
++++.+.+++.+.+|.+-+ . -+|++++|+. |+..++.+++ +|||+|++++|.|..+.. .+...|. +
T Consensus 111 ~LR~aia~~~~~~~g~~~~-~-~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~--------~~~~~g~--~ 178 (407)
T PLN02368 111 GVRKEVAEFIERRDGYPSD-P-ELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSA--------TISLLGG--T 178 (407)
T ss_pred HHHHHHHHHHHHhcCCCCC-h-hhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHH--------HHHHcCC--E
Confidence 5666677777777775421 1 2566777765 9999999887 799999999987665432 2345565 4
Q ss_pred EEeceecCC-CCCCCHHHHHHHhhhc-----CCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccc
Q 018300 226 SMPYRLDES-TGLVDYDMLEKTAILF-----RPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVA 294 (358)
Q Consensus 226 ~~~~~~~~~-~~~iD~d~le~~i~~~-----~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~ 294 (358)
+++++++++ +..+|++++++.++.. ++|++++..++|| ...+ +++|.++|+++|++|++|+++. .+.+
T Consensus 179 ~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~-~l~y 257 (407)
T PLN02368 179 LVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQ-QNIY 257 (407)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcccc-cccc
Confidence 555556543 3479999999987531 5787776656655 3444 6778889999999999999965 4454
Q ss_pred cCC--ccCC------C----C-CCc-EEEEcCcCcC---ccCcEEEEEE
Q 018300 295 ASV--VADP------F----K-YCD-VVTTTTHKSL---RGPRGGMIFF 326 (358)
Q Consensus 295 ~g~--~~~p------l----~-gaD-iv~~S~hK~L---~Gp~GG~I~~ 326 (358)
.+. .++. + + +.. +++.|++|++ +|+|.|++++
T Consensus 258 ~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~ 306 (407)
T PLN02368 258 QDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEM 306 (407)
T ss_pred CCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEE
Confidence 332 1111 1 1 112 6678999986 6999999985
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-13 Score=134.87 Aligned_cols=225 Identities=18% Similarity=0.147 Sum_probs=140.5
Q ss_pred ccChHHHHHHHHHHHHh-----hhccccccc--CCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHH
Q 018300 85 EADPEVCEIITKEKERQ-----FKSLELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (358)
Q Consensus 85 ~~d~~~~~~i~~e~~~~-----~~~i~lias--~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~l 157 (358)
..+++.+..+.+...+. +..++|--. +..+++.+++++.+.+.. ...|+. ..|.+ ++++.+.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~--~~~Y~~---~~G~~---~lr~aia~~~ 77 (393)
T TIGR03538 6 RLQPYPFEKLAALLAGVTPPASKPPIALSIGEPKHPTPAFVLEALRENLHG--LSTYPT---TKGLP---ELRQAIARWL 77 (393)
T ss_pred hCCccHHHHHHHHHHhhhhhcCCCeEEecCCCCCCCCCHHHHHHHHHHhhc--cCCCCC---CCCCH---HHHHHHHHHH
Confidence 34444554444444432 244444433 334688899999876542 123433 22333 4666666667
Q ss_pred HHHcCCCC-CCCcceEEeCCCH-HHHHHHHHHhccCCCE--EEecCCCCCcccccccccchhccccCCceEEEEeceecC
Q 018300 158 LAAFNLDE-NKWGVNVQPLSGS-PANFEVYTAILKPHDR--IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (358)
Q Consensus 158 a~lfg~~~-~~~~v~V~~~SGt-~A~~~a~~all~pGD~--Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~ 233 (358)
.+.+|... -++.-+|.+++|+ +|+..++.++++|||+ |++++|.+.++.. .+...|. +++++++++
T Consensus 78 ~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~ 147 (393)
T TIGR03538 78 ERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEG--------AALLAGA--EPYFLNCTA 147 (393)
T ss_pred HHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHH--------HHHhcCC--eEEEeeccc
Confidence 66666541 1111146667765 5999999999999996 8888876654321 2234565 455666654
Q ss_pred CC-CCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCC--ccCCC---
Q 018300 234 ST-GLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV--VADPF--- 302 (358)
Q Consensus 234 ~~-~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~--~~~pl--- 302 (358)
++ ..+|++++++.+.. ++|+|++..++||+ ..+ +++|.++|+++|++|++|+++. .+...+. .++.+
T Consensus 148 ~~~~~~d~~~l~~~~~~-~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~-~~~~~~~~~~~~~~~~~ 225 (393)
T TIGR03538 148 ENGFLPDFDAVPESVWR-RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYS-ELYFDEGNPPAGLLQAA 225 (393)
T ss_pred cCCCCCCHHHHHHHHhh-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchh-hcccCCCCCCcCHHHhc
Confidence 44 36899999987754 78988876667654 455 7888899999999999999975 3333221 11111
Q ss_pred C--CC-----cEEEEcCcCc--CccCcEEEEEEeCC
Q 018300 303 K--YC-----DVVTTTTHKS--LRGPRGGMIFFKKD 329 (358)
Q Consensus 303 ~--ga-----Div~~S~hK~--L~Gp~GG~I~~~~~ 329 (358)
. +. -+++.|++|. ++|.|.|+++++++
T Consensus 226 ~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~ 261 (393)
T TIGR03538 226 AQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAE 261 (393)
T ss_pred ccccccccccEEEEecchhhcCCcccceEEEecCHH
Confidence 1 11 1778999996 48889999998764
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-13 Score=135.01 Aligned_cols=196 Identities=14% Similarity=0.040 Sum_probs=128.4
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKP 191 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~p 191 (358)
.+++.+.+++...+... ..+|+. ..|.+ ++++.+.+++++.+|.+... .+|.+++|+ .|+..++.++++|
T Consensus 46 ~~~~~~~~~~~~~~~~~-~~~Y~~---~~G~~---~lr~~ia~~l~~~~g~~~~~--~~i~~t~G~~~al~~~~~~~~~~ 116 (402)
T PRK06107 46 DTPDHIKQAAVAAIERG-ETKYTL---VNGTP---ALRKAIIAKLERRNGLHYAD--NEITVGGGAKQAIFLALMATLEA 116 (402)
T ss_pred CCCHHHHHHHHHHHHcC-CCCCCC---CCCCH---HHHHHHHHHHHHhcCCCCCh--hhEEEeCCHHHHHHHHHHHhcCC
Confidence 34788889888776532 123433 22433 46666777788888875321 256677775 6999999989999
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC-
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD- 267 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d- 267 (358)
||+|+++++.|.++.. .+...+. ..++++++++ +..+|++++++.+.. ++++|++..+++| ...+
T Consensus 117 gd~vl~~~p~y~~y~~--------~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~ 185 (402)
T PRK06107 117 GDEVIIPAPYWVSYPD--------MVLANDG--TPVIVACPEEQGFKLTPEALEAAITP-RTRWLILNAPSNPTGAVYSR 185 (402)
T ss_pred CCEEEEecCCCcCHHH--------HHHHcCC--EEEEecCCcccCCCCCHHHHHhhcCc-CceEEEEECCCCCCCcCcCH
Confidence 9999999986665432 1223333 3444455433 346899999998753 6787776655554 4554
Q ss_pred --HHHHHHHHHHc-CCEEEEeccccccccccCC-ccCCCC---C---CcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 268 --YPRMRQIADAV-GALLMMDMAHISGLVAASV-VADPFK---Y---CDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 268 --l~~I~~ia~e~-g~~livD~Ah~~Gl~~~g~-~~~pl~---g---aDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
+++|+++|+++ |+++++|.++. .+.+.+. .++... + --+++.|++|.+ +|.|-|+++++++
T Consensus 186 ~~~~~l~~~a~~~~~~~iI~De~y~-~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~~ 258 (402)
T PRK06107 186 AELRALADVLLRHPHVLVLTDDIYD-HIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPAD 258 (402)
T ss_pred HHHHHHHHHHHHcCCeEEEEehhcc-ccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCHH
Confidence 67778889998 99999999876 3433321 221111 1 236788999997 5677899998774
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-13 Score=133.73 Aligned_cols=207 Identities=17% Similarity=0.116 Sum_probs=134.0
Q ss_pred hcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCC-HH
Q 018300 103 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SP 179 (358)
Q Consensus 103 ~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SG-t~ 179 (358)
..++|-.+++ .+++.+++++...+.+.. .+|+. ..|. .++++.+.+++.+.+|.+-. ..-+|.+++| ++
T Consensus 21 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~---~~g~---~~lr~~ia~~~~~~~g~~~~-~~~~i~~t~G~~~ 92 (378)
T PRK07682 21 GVISLGVGEPDFVTPWNVREASIRSLEQGY-TSYTA---NAGL---LELRQEIAKYLKKRFAVSYD-PNDEIIVTVGASQ 92 (378)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCc---HHHHHHHHHHHHHHhCCCCC-CCCcEEEeCChHH
Confidence 3456654444 346677888776654322 23432 1233 35777777777777776421 1013555665 56
Q ss_pred HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhhcCCeEEEEc
Q 018300 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAG 258 (358)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~~~~klIi~~ 258 (358)
|+..++.++++|||+|++.++.|..+.. .+...|. +.++++++++ ++.+|++++++.+.. ++++|++.
T Consensus 93 al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~ 161 (378)
T PRK07682 93 ALDVAMRAIINPGDEVLIVEPSFVSYAP--------LVTLAGG--VPVPVATTLENEFKVQPAQIEAAITA-KTKAILLC 161 (378)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEeecCCccCCCCCHHHHHhhcCc-ccEEEEEE
Confidence 9999999999999999999886654321 2334455 3445555432 457999999998764 68888776
Q ss_pred CCCCCC--CC---CHHHHHHHHHHcCCEEEEeccccccccccCCccC--CCC---CCcEEEEcCcCcC--ccCcEEEEEE
Q 018300 259 ASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK---YCDVVTTTTHKSL--RGPRGGMIFF 326 (358)
Q Consensus 259 ~s~~~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~--pl~---gaDiv~~S~hK~L--~Gp~GG~I~~ 326 (358)
.+++|+ .. ++++|.++|+++|+++++|+++. .+...+...+ .+. .-.+++.|++|+| +|.|-|++++
T Consensus 162 ~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~ 240 (378)
T PRK07682 162 SPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYA-ELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAA 240 (378)
T ss_pred CCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhh-hcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhc
Confidence 566653 44 48889999999999999999976 4443332111 111 2347889999997 4667799999
Q ss_pred eCC
Q 018300 327 KKD 329 (358)
Q Consensus 327 ~~~ 329 (358)
+++
T Consensus 241 ~~~ 243 (378)
T PRK07682 241 PVY 243 (378)
T ss_pred CHH
Confidence 774
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-13 Score=136.38 Aligned_cols=197 Identities=18% Similarity=0.137 Sum_probs=128.3
Q ss_pred CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhcc
Q 018300 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILK 190 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~ 190 (358)
-.+|+.+.+++...+.+....+|+. ..|.+ ++++...+++.+.+|.+-. + -+|++++|+. |+..++ .+++
T Consensus 47 ~~~p~~~~~a~~~~~~~~~~~~Y~~---~~G~~---~LReaia~~~~~~~g~~~~-~-~~I~it~G~~~al~~~~-~l~~ 117 (433)
T PRK06855 47 EKIPDWMKEIVAELVMDDKSYGYCP---TKGVL---ETREFLAELNNKRGGAQIT-P-DDIIFFNGLGDAIAKIY-GLLR 117 (433)
T ss_pred CCCCHHHHHHHHHHhhcCCCCCCCC---CCCCH---HHHHHHHHHHHhccCCCCC-H-hHEEEcCcHHHHHHHHH-HhcC
Confidence 3678888888877654322223432 23443 5666666777776665421 1 2566777765 887777 4789
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC-CCCCHHHHHHHhhh-cCCeEEEEcCCCCCC--CC
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAIL-FRPKLIIAGASAYPR--DF 266 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~iD~d~le~~i~~-~~~klIi~~~s~~~~--~~ 266 (358)
|||+|++.+|.|.++... .....|. +++++++++++ ..+|+++|++.+.. .+++++++..++||+ ..
T Consensus 118 ~Gd~Vlv~~P~Y~~~~~~-------~~~~~g~--~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~ 188 (433)
T PRK06855 118 REARVIGPSPAYSTHSSA-------EAAHAGY--PPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVY 188 (433)
T ss_pred CCCeEEEeCCCCchHHHH-------HHHhcCC--eEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCC
Confidence 999999999877654211 0112243 45566666433 46899999998864 256777666666654 44
Q ss_pred C---HHHHHHHHHHcCCEEEEeccccccccccCCccCCC----CC-CcEEEEcCcCcC--ccCcEEEEEEe
Q 018300 267 D---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF----KY-CDVVTTTTHKSL--RGPRGGMIFFK 327 (358)
Q Consensus 267 d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl----~g-aDiv~~S~hK~L--~Gp~GG~I~~~ 327 (358)
+ +++|.++|+++|++||+|.++. .+.+.+..+.++ +. --+++.|++|++ +|.|.|+++..
T Consensus 189 s~~~~~~l~~~a~~~~~~II~De~Y~-~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p 258 (433)
T PRK06855 189 PKEILREIVDIAREYDLFIICDEIYN-NIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVY 258 (433)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecccc-ccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEe
Confidence 4 6778889999999999999965 555433211122 11 237889999987 78899999974
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.1e-13 Score=132.78 Aligned_cols=229 Identities=15% Similarity=0.087 Sum_probs=136.7
Q ss_pred cccccChHHHHHHHHHHHHh----hhcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHH
Q 018300 82 SLGEADPEVCEIITKEKERQ----FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK 155 (358)
Q Consensus 82 ~l~~~d~~~~~~i~~e~~~~----~~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~ 155 (358)
++.++.++++..+.+..... ...++|-.+++ .+++.+++++.+.+.+....+|+. ..|.. ++++.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~lr~aia~ 79 (405)
T PRK09148 6 RIRRLPPYVFEQVNRLKAAARAAGADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSA---SKGIP---GLRRAQAA 79 (405)
T ss_pred hhhcCCccHHHHHHHHHHHHHhcCCCeEEcCCCCCCCCCCHHHHHHHHHHHcCcccCCCCC---CCCCH---HHHHHHHH
Confidence 34555566555554433321 23345543333 346888888876654322233443 12433 46666666
Q ss_pred HHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC
Q 018300 156 RALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES 234 (358)
Q Consensus 156 ~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~ 234 (358)
++.+.+|.+-. +.-+|.+++|+ +|+..++.+++++||+|++++|.|.++.. .....|. ++.+++++++
T Consensus 80 ~~~~~~g~~~~-~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~--------~~~~~g~--~v~~v~~~~~ 148 (405)
T PRK09148 80 YYARRFGVKLN-PDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAF--------GFIMAGG--VIRSVPAEPD 148 (405)
T ss_pred HHHHHhCCCCC-CCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHH--------HHHhcCC--EEEEEeCCCC
Confidence 66666675421 11146677775 59999999999999999999987766422 1234565 4445555533
Q ss_pred C-CCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCC-ccCC--CCC-
Q 018300 235 T-GLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP--FKY- 304 (358)
Q Consensus 235 ~-~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~~p--l~g- 304 (358)
+ ...+++++.+... .++++|++..+++| ...+ +++|.++|+++|+++++|+++. .+.+.+. .++. +++
T Consensus 149 ~~~~~~l~~~~~~~~-~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~-~~~~~~~~~~s~~~~~~~ 226 (405)
T PRK09148 149 EEFFPALERAVRHSI-PKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYS-EIYFDGNPPPSVLQVPGA 226 (405)
T ss_pred CCCccCHHHHHhhcc-ccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccch-hhhcCCCCCCChhhCCCc
Confidence 3 2334444333222 36788887766665 4555 4678889999999999999976 3433321 1111 221
Q ss_pred --CcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 305 --CDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 305 --aDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
..+++.|++|.+ +|.|.|+++.+++
T Consensus 227 ~~~~i~~~SfSK~~~~pGlR~G~~v~~~~ 255 (405)
T PRK09148 227 KDVTVEFTSMSKTFSMAGWRMGFAVGNER 255 (405)
T ss_pred cCcEEEEeccccccCCcchheeeeeCCHH
Confidence 235689999987 6778899998764
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-13 Score=139.59 Aligned_cols=175 Identities=21% Similarity=0.189 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCC------------CCCcceEEeCCCHHHHHHHHHHh----cc-----------------
Q 018300 144 EYIDELETLCQKRALAAFNLDE------------NKWGVNVQPLSGSPANFEVYTAI----LK----------------- 190 (358)
Q Consensus 144 ~~~~~lE~~~~~~la~lfg~~~------------~~~~v~V~~~SGt~A~~~a~~al----l~----------------- 190 (358)
+...++|+.+.+|++++++..+ ..+ -+++++||.||..++.+- ++
T Consensus 125 pa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~--G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~ 202 (522)
T TIGR03799 125 KAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSL--GAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAAL 202 (522)
T ss_pred cchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCC--eEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhh
Confidence 3455799999999999985311 112 355678888998887542 11
Q ss_pred -----CCCEEEecCCCCCcccccccccchhccccCCce-EEEEeceecCCCCCCCHHHHHHHhhh---cCCeEE-EE---
Q 018300 191 -----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDESTGLVDYDMLEKTAIL---FRPKLI-IA--- 257 (358)
Q Consensus 191 -----pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~iD~d~le~~i~~---~~~klI-i~--- 257 (358)
+++.|++++.+|. +.. +.+...|.. .++..+++| +++.+|+++|++.+++ .+.+.+ ++
T Consensus 203 ~~~~~~~~~v~~S~~~H~---S~~-----kaa~~lglg~~~v~~vp~d-~~g~~d~~~L~~~i~~~~~~g~~~~~vvata 273 (522)
T TIGR03799 203 KHYGYDGLAILVSERGHY---SLG-----KAADVLGIGRDNLIAIKTD-ANNRIDVDALRDKCAELAEQNIKPLAIVGVA 273 (522)
T ss_pred hhccCCceEEEECCCchH---HHH-----HHHHHcCCCcccEEEEEeC-CCCcCCHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence 2346777765443 321 233344541 133445566 4689999999998853 233333 22
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc---CCCCCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 258 GASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 258 ~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~---~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+.+..|...|+++|+++|+++|+++++|+||+.+........ ..++++|.+++++||||.+|.| |+++.+++
T Consensus 274 Gtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~ 349 (522)
T TIGR03799 274 GTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDP 349 (522)
T ss_pred cCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCH
Confidence 334578889999999999999999999999885544222111 1123789999999999999998 88888875
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.7e-13 Score=131.84 Aligned_cols=190 Identities=15% Similarity=0.099 Sum_probs=121.7
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHc--CCCCCCCcceEEeCCCHH-HHHHHHHHhcc
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF--NLDENKWGVNVQPLSGSP-ANFEVYTAILK 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lf--g~~~~~~~v~V~~~SGt~-A~~~a~~all~ 190 (358)
+++.+.+++...+... .+|+. ..|.+ ++++.+.+++.... +++++ +|.+++|+. ++..++.++++
T Consensus 50 ~~~~i~~~~~~~~~~~--~~Y~~---~~G~~---~lr~~ia~~~~~~~~~~~~~~----~i~~t~G~~~~l~~~~~~~~~ 117 (404)
T PRK09265 50 APDEILRDVIRNLPTA--QGYSD---SKGLF---SARKAIMQYYQQKGIPDVDVD----DIYIGNGVSELIVMAMQALLN 117 (404)
T ss_pred CCHHHHHHHHHHhhcC--CCCCC---CCCcH---HHHHHHHHHHhccCCCCCCcc----cEEEeCChHHHHHHHHHHhCC
Confidence 6788888887655422 24443 22332 34443333332211 55553 466677765 78889999999
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD 267 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d 267 (358)
|||+|+++++.|..+.. .+...|. +.+.++.+.+ ++.+|++++++.+.. ++++|++..+++| ...+
T Consensus 118 ~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~v~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~P~NPtG~~~~ 186 (404)
T PRK09265 118 NGDEVLVPAPDYPLWTA--------AVSLSGG--KPVHYLCDEEAGWFPDLDDIRSKITP-RTKAIVIINPNNPTGAVYS 186 (404)
T ss_pred CCCEEEEeCCCCcChHH--------HHHHcCC--EEEEEecccccCCCCCHHHHHHhccc-cceEEEEECCCCCCCcCCC
Confidence 99999999987765322 2233454 3344444432 457999999998754 6888776555654 5667
Q ss_pred ---HHHHHHHHHHcCCEEEEeccccccccccCCccCCC---C-CCc-EEEEcCcCcC--ccCcEEEEEEe
Q 018300 268 ---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCD-VVTTTTHKSL--RGPRGGMIFFK 327 (358)
Q Consensus 268 ---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~-gaD-iv~~S~hK~L--~Gp~GG~I~~~ 327 (358)
+++|.++|+++|+++++|+++. .+.+.+....++ . ... +++.|++|++ +|.|.|+++..
T Consensus 187 ~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~ 255 (404)
T PRK09265 187 KELLEEIVEIARQHNLIIFADEIYD-KILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLS 255 (404)
T ss_pred HHHHHHHHHHHHHCCCEEEEehhhh-hccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEe
Confidence 8889999999999999999976 444333211121 1 222 4568899997 67888999864
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.5e-14 Score=149.49 Aligned_cols=165 Identities=20% Similarity=0.212 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc--------cCCCEEEecCCCCCcccccccccchhccc
Q 018300 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--------KPHDRIMGLDLPHGGHLSHGFMTPKRRVS 218 (358)
Q Consensus 147 ~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--------~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~ 218 (358)
.+++.+.+.++++++|.+. +.+++.+|+.|..+.++++- ...++|+++...||.++. .+.
T Consensus 529 lq~i~elq~~l~eltGmd~----~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPa--------sa~ 596 (939)
T TIGR00461 529 QELIAQLEKWLCSITGFDA----ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPA--------SAA 596 (939)
T ss_pred HHHHHHHHHHHHHHHCCCC----cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHH--------HHH
Confidence 3556667889999999996 46888899988887665552 234578888877765543 223
Q ss_pred cCCceEEEEeceecCCCCCCCHHHHHHHhhh--cCCeEEEEcC-CCCCCCCC-HHHHHHHHHHcCCEEEEeccccccccc
Q 018300 219 GTSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGA-SAYPRDFD-YPRMRQIADAVGALLMMDMAHISGLVA 294 (358)
Q Consensus 219 ~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~--~~~klIi~~~-s~~~~~~d-l~~I~~ia~e~g~~livD~Ah~~Gl~~ 294 (358)
..|. +++.++.+ +++.+|+++|++++++ .++++|++.+ +++|...| +++|+++||++|.++++|+||..++..
T Consensus 597 ~~G~--~Vv~V~~d-~~G~iDle~L~~~i~~~~~~taaV~iT~pst~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~ 673 (939)
T TIGR00461 597 MAGM--QVVPVNCD-QDGNIDLVDLKNKAEQHGDELAAVMVTYPSTHGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVG 673 (939)
T ss_pred HCCC--EEEEeccC-CCCCcCHHHHHHHHhhcCCceEEEEEEeCCcCceecccHHHHHHHHHHcCCEEEEEecChhhCCC
Confidence 4565 44444565 5789999999999975 3677776654 55676655 999999999999999999999765542
Q ss_pred cCCccCCCC-CCcEEEEcCcCcCccCc-----E-EEEEEeCC
Q 018300 295 ASVVADPFK-YCDVVTTTTHKSLRGPR-----G-GMIFFKKD 329 (358)
Q Consensus 295 ~g~~~~pl~-gaDiv~~S~hK~L~Gp~-----G-G~I~~~~~ 329 (358)
...|-+ |+|++++|.||+|++|. | |++.+++.
T Consensus 674 ---l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~ 712 (939)
T TIGR00461 674 ---LTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH 712 (939)
T ss_pred ---CCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh
Confidence 223444 99999999999997444 3 88888864
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.55 E-value=4e-13 Score=136.52 Aligned_cols=194 Identities=12% Similarity=0.058 Sum_probs=126.7
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceEEeCCCH-HHHHHHHHHhc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSGS-PANFEVYTAIL 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg--~~~~~~~v~V~~~SGt-~A~~~a~~all 189 (358)
.+++.+.+++...+......+|.. ..|. .++++.+.+++.+.+| ++++ +|.+++|+ +|+..++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~---~~lR~aiA~~~~~~~~~~~~~~----~I~it~G~~~al~~~~~~l~ 152 (462)
T PLN02187 83 RTCIEAEDAVVDVLRSGKGNSYGP---GAGI---LPARRAVADYMNRDLPHKLTPE----DIFLTAGCNQGIEIVFESLA 152 (462)
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCC---CCCh---HHHHHHHHHHHHHhcCCCCCcc----cEEEeCCHHHHHHHHHHHhc
Confidence 356788888887665432223322 1232 2455555555555444 3443 46666665 69999999999
Q ss_pred cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC-CCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCC
Q 018300 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAGASAYP--RDF 266 (358)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~ 266 (358)
+|||+|++++|.|.++.. .+...|..+ .++++.+ ++..+|++++++.++. ++++|++..+++| ...
T Consensus 153 ~pGd~Vlv~~P~y~~y~~--------~~~~~g~~~--~~~~l~~~~~~~~d~~~l~~~~~~-~~~~v~i~nP~NPTG~v~ 221 (462)
T PLN02187 153 RPNANILLPRPGFPHYDA--------RAAYSGLEV--RKFDLLPEKEWEIDLEGIEAIADE-NTVAMVVINPNNPCGNVY 221 (462)
T ss_pred CCCCEEEEeCCCCccHHH--------HHHHcCCEE--EEEeCccccCCccCHHHHHHhcCC-CcEEEEEeCCCCCCCCcc
Confidence 999999999987665421 234556644 4444433 3468999999988754 5676666556665 455
Q ss_pred C---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC----CC-cEEEEcCcCcC--ccCcEEEEEEeC
Q 018300 267 D---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YC-DVVTTTTHKSL--RGPRGGMIFFKK 328 (358)
Q Consensus 267 d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~----ga-Div~~S~hK~L--~Gp~GG~I~~~~ 328 (358)
+ +++|.++|+++|++||+|+++. .+.+.+....++. .. =+++.|++|++ +|.|.|++++.+
T Consensus 222 s~e~l~~i~~~a~~~~i~iI~DE~Y~-~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~ 292 (462)
T PLN02187 222 SHDHLKKVAETARKLGIMVISDEVYD-RTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIALND 292 (462)
T ss_pred CHHHHHHHHHHHHHCCCEEEEecccc-ccccCCCCceeHHHhccCCcEEEEecchhhcCCccceeEEEEecC
Confidence 4 7888999999999999999965 5544332111222 11 26678999995 788999999854
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.9e-14 Score=149.54 Aligned_cols=156 Identities=20% Similarity=0.242 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc-------C-CCEEEecCCCCCcccccccccchhccc
Q 018300 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-------P-HDRIMGLDLPHGGHLSHGFMTPKRRVS 218 (358)
Q Consensus 147 ~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~-------p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~ 218 (358)
+.+.+ .++++++++|.+. +.+++.||+.|++++++++-. + .++|+++...|+.++.. ..
T Consensus 543 q~i~e-lq~~l~eLtGmd~----~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpas--------a~ 609 (954)
T PRK12566 543 AMIDE-LEAWLCAITGFDA----ICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPAS--------AQ 609 (954)
T ss_pred HHHHH-HHHHHHHHHCCCe----EeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHH--------HH
Confidence 44444 3568999999998 478999999999888877632 3 35778887767665432 23
Q ss_pred cCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCe--EEEEcCCC-CCC-CCCHHHHHHHHHHcCCEEEEeccccccccc
Q 018300 219 GTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK--LIIAGASA-YPR-DFDYPRMRQIADAVGALLMMDMAHISGLVA 294 (358)
Q Consensus 219 ~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~k--lIi~~~s~-~~~-~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~ 294 (358)
..|. +++.++.+ ++|.+|+++|++++++.+++ +|.+..++ ++. ..|+++|+++||++|+++++|++|..++..
T Consensus 610 ~~Gi--eVv~Vp~D-~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~ 686 (954)
T PRK12566 610 MAGM--RVVIVECD-PDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVG 686 (954)
T ss_pred HCCC--EEEEeccC-CCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccC
Confidence 4465 45555566 47899999999998744444 44444444 443 456999999999999999999999876552
Q ss_pred cCCccCCCC-CCcEEEEcCcCcCccCcE
Q 018300 295 ASVVADPFK-YCDVVTTTTHKSLRGPRG 321 (358)
Q Consensus 295 ~g~~~~pl~-gaDiv~~S~hK~L~Gp~G 321 (358)
+..|-+ |+|++++++||||++|+|
T Consensus 687 ---l~~Pg~~GADi~~~s~HKtf~~P~G 711 (954)
T PRK12566 687 ---LARPADIGADVSHMNLHKTFCIPHG 711 (954)
T ss_pred ---CCChhhcCCCEEEecCCcccCcCcc
Confidence 223445 999999999999998876
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-13 Score=137.88 Aligned_cols=201 Identities=19% Similarity=0.171 Sum_probs=140.3
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al 188 (358)
..+..+++.+.+++...+... -+.++ .+. ...++|+.+..++++++|.+... .-+++.+||+||+.++.+.
T Consensus 69 ~~~~~~~~~a~~~~~~~~~~n--l~d~~--~~p---~a~~~E~~~v~~l~~l~~~~~~~--~G~~t~GgTean~lal~aa 139 (460)
T COG0076 69 FCPTRVPPVAAELLVSALNKN--LGDPD--ESP---AAAELEERVVNMLSDLLGAPEEA--SGTFTSGGTEANLLALLAA 139 (460)
T ss_pred cCCCCCHHHHHHHHHHHHhhc--CCCcc--cCh---hHHHHHHHHHHHHHHHhCCCCCC--ceEEEcChHHHHHHHHHHH
Confidence 456667777888887665432 23333 222 23479999999999999996433 3466778899999887654
Q ss_pred ---cc--C---CC------EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCe-
Q 018300 189 ---LK--P---HD------RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK- 253 (358)
Q Consensus 189 ---l~--p---GD------~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~k- 253 (358)
+. . +. +|+++. .+|++.. |.+.+.|.+.+.++ .++.+..+|+++|++++.+.+..
T Consensus 140 r~~~~~~~~~~~~~~~~~P~ii~s~---~aH~s~~-----Kaa~~lG~~~~~v~--~~~~~~~id~~~l~~~i~~~t~~g 209 (460)
T COG0076 140 RERWRKRALAESGKPGGKPNIVCSE---TAHFSFE-----KAARYLGLGLRRVP--TVPTDYRIDVDALEEAIDENTIGG 209 (460)
T ss_pred HHHHHHHhhhcccccCCCCeEEecC---cchhHHH-----HHHHHhCCCceeEE--eccCccccCHHHHHHHHHhhccCc
Confidence 21 1 11 577765 3666532 45667787666665 44436799999999999876665
Q ss_pred -EEE-EcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccc-cCCcc----CCCCCCcEEEEcCcCcCccCcE-EEEE
Q 018300 254 -LII-AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVA-ASVVA----DPFKYCDVVTTTTHKSLRGPRG-GMIF 325 (358)
Q Consensus 254 -lIi-~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~-~g~~~----~pl~gaDiv~~S~hK~L~Gp~G-G~I~ 325 (358)
+|. ++.+.+|..-|+++|.++|++++++++||+|-. |++. ..... ..++++|-++.++||++..|.| |+++
T Consensus 210 ~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~G-G~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il 288 (460)
T COG0076 210 VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFG-GFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVL 288 (460)
T ss_pred eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEcccc-ceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEE
Confidence 443 355667888899999999999999999999855 4433 11111 1223899999999999988876 8888
Q ss_pred EeCC
Q 018300 326 FKKD 329 (358)
Q Consensus 326 ~~~~ 329 (358)
.+++
T Consensus 289 ~rd~ 292 (460)
T COG0076 289 FRDE 292 (460)
T ss_pred EECH
Confidence 8886
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=135.63 Aligned_cols=204 Identities=18% Similarity=0.149 Sum_probs=134.6
Q ss_pred hcccccccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-
Q 018300 103 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP- 179 (358)
Q Consensus 103 ~~i~lias~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~- 179 (358)
.-++|-..+|+ ++|.|++++... . ....||. .. ..+ .++.+++++|++++ +|.+++|+.
T Consensus 53 ~~i~l~~n~~p~~~~~~v~~a~~~~-~--~~~~Yp~------~~-~~~----lr~~ia~~~~~~~~----~I~~t~Ga~~ 114 (380)
T PLN03026 53 DIVKLDANENPYGPPPEVLEALGNM-K--FPYVYPD------PE-SRR----LRAALAEDSGLESE----NILVGCGADE 114 (380)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHhh-H--hhccCCC------CC-HHH----HHHHHHHHhCcChh----hEEEcCCHHH
Confidence 34555555553 688899988642 1 1111322 11 122 45568889998874 566787765
Q ss_pred HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC
Q 018300 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (358)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~ 259 (358)
++..++.++++|||+|+++++.++.+.. .....|.. ++.++.+ +++.+|++++++.+...++|+|++..
T Consensus 115 ~i~~~~~~~~~~gd~Vlv~~P~y~~y~~--------~~~~~g~~--~~~v~~~-~~~~~d~~~l~~~~~~~~~~~v~l~~ 183 (380)
T PLN03026 115 LIDLLMRCVLDPGDKIIDCPPTFGMYVF--------DAAVNGAE--VIKVPRT-PDFSLDVPRIVEAVETHKPKLLFLTS 183 (380)
T ss_pred HHHHHHHHhcCCCCEEEEcCCChHHHHH--------HHHHcCCE--EEEeecC-CCCCcCHHHHHHHHhccCCcEEEEeC
Confidence 8888888889999999999886643311 22345654 4444454 34678999999887445789988876
Q ss_pred CCCC--CCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcC--ccCcEEEEEEeCCCCch
Q 018300 260 SAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLG 333 (358)
Q Consensus 260 s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~~~ 333 (358)
+++| ...+.+++.++++.. +++++|+++. .+...+.....++ .-.+++.|++|.+ +|.|.|++++++
T Consensus 184 P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~-~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~----- 256 (380)
T PLN03026 184 PNNPDGSIISDDDLLKILELP-ILVVLDEAYI-EFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPL----- 256 (380)
T ss_pred CCCCCCCCCCHHHHHHHHhcC-CEEEEECcch-hhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCH-----
Confidence 7764 588999999999865 9999999975 3332221111122 2347889999996 678889999876
Q ss_pred hHHHHHHhhc
Q 018300 334 VELESAINNA 343 (358)
Q Consensus 334 ~~~~~~i~~~ 343 (358)
++.+++...
T Consensus 257 -~~i~~l~~~ 265 (380)
T PLN03026 257 -SIIEYLWRA 265 (380)
T ss_pred -HHHHHHHHh
Confidence 455555443
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=131.73 Aligned_cols=196 Identities=19% Similarity=0.248 Sum_probs=131.1
Q ss_pred ccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHH
Q 018300 109 ASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT 186 (358)
Q Consensus 109 as~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~ 186 (358)
.|+|. ++|+++++|...-. .+..-||..+++..+|+ +++++||... .+++.|||+||..++.
T Consensus 5 ~SDn~~g~~~~m~eam~~a~~-------~~~~~YG~D~~~~~~e~----~~ae~~g~~a-----~~Fv~sGT~aN~lal~ 68 (342)
T COG2008 5 RSDNVAGPTPEMREALAAANA-------VGDDVYGEDPTTNALEQ----RIAELFGKEA-----ALFVPSGTQANQLALA 68 (342)
T ss_pred ccCccCCCCHHHHHHHHhccc-------cCCCCCCCCHHHHHHHH----HHHHHhCCce-----EEEecCccHHHHHHHH
Confidence 46675 48999999975421 12223566666555554 5889999943 4677899999999999
Q ss_pred HhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC-CCCCCCHHHHHHHhhhc------CCeEEEEcC
Q 018300 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILF------RPKLIIAGA 259 (358)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~iD~d~le~~i~~~------~~klIi~~~ 259 (358)
+.++||+.|++-.. +|.. ......+.+.+.. ..++ +.+ .++.+++|+|+..+... +|.+++.+.
T Consensus 69 ~~~~~~~~vi~~~~---aHi~---~~E~Ga~~~~~~~-~~~~--~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~ 139 (342)
T COG2008 69 AHCQPGESVICHET---AHIY---TDECGAPEFFGGG-QKLP--IVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENT 139 (342)
T ss_pred HhcCCCCeEEEecc---ccce---ecccCcHHHHcCC-ceec--cCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeec
Confidence 99999999998653 4432 1112233433321 1222 333 57899999999977531 234555544
Q ss_pred C-CCCCCCC---HHHHHHHHHHcCCEEEEecccccccc-ccCCccCCCC-CCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 260 S-AYPRDFD---YPRMRQIADAVGALLMMDMAHISGLV-AASVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 260 s-~~~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~-~~g~~~~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
+ ..|+..+ +++|.++||++|++|++|+|-..-.. +.+.-...+. ++|+++++++|.++.|-|.+|+++.+
T Consensus 140 ~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~ 215 (342)
T COG2008 140 ATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRD 215 (342)
T ss_pred cCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceeeeEEEcCHH
Confidence 3 3576665 56777899999999999998653322 2231111122 89999999999998888888888874
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-13 Score=134.62 Aligned_cols=192 Identities=20% Similarity=0.191 Sum_probs=127.7
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC--------CCCCCCcceEEeCCC-HHHHHH
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--------LDENKWGVNVQPLSG-SPANFE 183 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg--------~~~~~~~v~V~~~SG-t~A~~~ 183 (358)
.+++.+++++.+.+......+|+.. .|.. ++++.+.+++.+.++ ++++ +|.+++| ++|+..
T Consensus 50 ~p~~~~~~a~~~~~~~~~~~~Y~~~---~G~~---~Lr~aia~~~~~~~~~~~~~~~~~~~~----~i~it~G~~~al~~ 119 (412)
T PTZ00433 50 LTPAIQTKALVEAVDSQECNGYPPT---VGSP---EAREAVATYWRNSFVHKESLKSTIKKD----NVVLCSGVSHAILM 119 (412)
T ss_pred CCCHHHHHHHHHHhhcCCCCCCCCC---CCcH---HHHHHHHHHHHhhccccccccCCCChh----hEEEeCChHHHHHH
Confidence 5788999998876654222344431 1332 466655555555443 3443 4556666 469999
Q ss_pred HHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhhcCCeEEEEcCCCC
Q 018300 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAY 262 (358)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~~~~klIi~~~s~~ 262 (358)
++.++++|||+|+++++.|..+.. .+...|.. +.+++++++ ++.+|++++++.+.. ++|+|++..++|
T Consensus 120 ~~~~~~~~gd~vlv~~P~y~~~~~--------~~~~~g~~--~~~i~~~~~~~~~~d~~~l~~~~~~-~~~~i~~~~p~N 188 (412)
T PTZ00433 120 ALTALCDEGDNILVPAPGFPHYET--------VCKAYGIE--MRFYNCRPEKDWEADLDEIRRLVDD-RTKALIMTNPSN 188 (412)
T ss_pred HHHHhcCCCCEEEEccCCcccHHH--------HHHHcCCE--EEEEecCccccCcCCHHHHHHHhcc-CceEEEEeCCCC
Confidence 999999999999999987655422 23445654 444445433 458999999988764 688888866666
Q ss_pred CC--CC---CHHHHHHHHHHcCCEEEEeccccccccccCC-ccC--CCC-C-CcEEEEcCcCcC--ccCcEEEEEE
Q 018300 263 PR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VAD--PFK-Y-CDVVTTTTHKSL--RGPRGGMIFF 326 (358)
Q Consensus 263 ~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~~--pl~-g-aDiv~~S~hK~L--~Gp~GG~I~~ 326 (358)
|+ .. ++++|.++|+++|++|++|+++. .+.+.+. .+. .++ . --+++.|++|++ +|.|-|+++.
T Consensus 189 PtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~ 263 (412)
T PTZ00433 189 PCGSNFSRKHVEDIIRLCEELRLPLISDEIYA-GMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLL 263 (412)
T ss_pred CCCcccCHHHHHHHHHHHHHcCCeEEEecccc-ccccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEEEE
Confidence 54 33 47888999999999999999975 5554332 111 122 1 126788999986 7788899997
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.7e-13 Score=132.27 Aligned_cols=194 Identities=14% Similarity=0.062 Sum_probs=128.0
Q ss_pred CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceEEeCCCH-HHHHHHHHHh
Q 018300 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGS-PANFEVYTAI 188 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~--~~~~~~v~V~~~SGt-~A~~~a~~al 188 (358)
..+++.+++++...+......+|+. ..|.. ++.+.+.+++.+.+|. +++ +|++++|+ +|+..++.++
T Consensus 48 ~~~p~~~~~a~~~~~~~~~~~~Y~~---~~G~~---~lr~aia~~~~~~~g~~~~~~----~I~it~G~~~al~~~~~~l 117 (409)
T PLN00143 48 FRTTNIAEDAIVEAVRSAKFNSYAP---TGGIL---PARRAIADYLSNDLPYQLSPD----DVYLTLGCKHAAEIIIKVL 117 (409)
T ss_pred CCCCHHHHHHHHHHHhCcCCCCCCC---CCCCH---HHHHHHHHHHHhhcCCCCCHh----hEEEecChHHHHHHHHHHH
Confidence 4678889999887665432233422 12433 4555555666555543 443 46666665 5999999999
Q ss_pred ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CC
Q 018300 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYP--RD 265 (358)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~ 265 (358)
++|||+|++.+|.|.++.. .+...|. ++..++++++ +..+|++++++.+.. +++++++..++|| ..
T Consensus 118 ~~~gd~v~v~~P~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~~~~~nP~NPTG~~ 186 (409)
T PLN00143 118 ARPEANILLPRPGFPDVET--------YAIFHHL--EIRHFDLLPEKGWEVDLDAVEAIADE-NTIAMVIINPGNPCGSV 186 (409)
T ss_pred cCCCCEEEEcCCCCcCHHH--------HHHHcCC--EEEEEeccCCCCCcCCHHHHHHhccc-CCEEEEEECCCCCCCCc
Confidence 9999999999987665422 2234555 4445555433 346899999988754 5666665555665 45
Q ss_pred CC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCC---CCC--cEEEEcCcCc--CccCcEEEEEEe
Q 018300 266 FD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYC--DVVTTTTHKS--LRGPRGGMIFFK 327 (358)
Q Consensus 266 ~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~ga--Div~~S~hK~--L~Gp~GG~I~~~ 327 (358)
.+ +++|.++|+++|+++++|+++. .+.+.+....++ +.. =+++.|++|. ++|.|.|++++.
T Consensus 187 ~s~~~~~~l~~~a~~~~~~ii~De~Y~-~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~ 257 (409)
T PLN00143 187 YSYEHLNKIAETARKLGILVIADEVYG-HIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTC 257 (409)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEcccc-ccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEee
Confidence 55 7788889999999999999965 555433211222 211 2678999999 478899999984
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=126.04 Aligned_cols=178 Identities=19% Similarity=0.145 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEE
Q 018300 146 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE 225 (358)
Q Consensus 146 ~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~ 225 (358)
.+++++..++.+...++...... ..++..+|+.++..++.++.++||+|+++++.|.++.. .+...+. +
T Consensus 38 ~~~l~~~l~~~l~~~~~~~~~~~-~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~--------~~~~~~~--~ 106 (350)
T cd00609 38 LPELREAIAEWLGRRGGVDVPPE-EIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEA--------AARLAGA--E 106 (350)
T ss_pred cHHHHHHHHHHHHHHhCCCCCcc-eEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHCCC--E
Confidence 34677766666666655311111 13445567789999999999999999999876555421 2334454 4
Q ss_pred EEeceecCCCCCCCH--HHHHHHhhhcCCeEEEEcCCCC--CCCCCHH---HHHHHHHHcCCEEEEeccccccccccCCc
Q 018300 226 SMPYRLDESTGLVDY--DMLEKTAILFRPKLIIAGASAY--PRDFDYP---RMRQIADAVGALLMMDMAHISGLVAASVV 298 (358)
Q Consensus 226 ~~~~~~~~~~~~iD~--d~le~~i~~~~~klIi~~~s~~--~~~~dl~---~I~~ia~e~g~~livD~Ah~~Gl~~~g~~ 298 (358)
+..++.++ ++..+. +.++.... .++++|++..+++ |...|++ +|.++|+++|+++++|++|+.+.. .+..
T Consensus 107 ~~~i~~~~-~~~~~~~~~~~~~~~~-~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~-~~~~ 183 (350)
T cd00609 107 VVPVPLDE-EGGFLLDLELLEAAKT-PKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVY-DGEP 183 (350)
T ss_pred EEEEeccc-ccCCccCHHHHHhhcC-ccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhcee-CCcc
Confidence 44445553 333333 55555543 4788888765554 5566655 455899999999999999975443 2222
Q ss_pred c---CCCC--CCcEEEEcCcCcCc--cCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 299 A---DPFK--YCDVVTTTTHKSLR--GPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 299 ~---~pl~--gaDiv~~S~hK~L~--Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+ ...+ ++|+++.|+||+++ |++.|+++++++ ++.+.+..
T Consensus 184 ~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~-----~~~~~~~~ 229 (350)
T cd00609 184 PPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPE-----ELLERLKK 229 (350)
T ss_pred cccccCcCccCcEEEEeecccccCCcccceEEEecCHH-----HHHHHHHH
Confidence 1 1122 68999999999984 567799999884 45555544
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.9e-13 Score=134.56 Aligned_cols=196 Identities=15% Similarity=0.126 Sum_probs=127.3
Q ss_pred CCCcHHHHHHHhhhhhccc--CCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHh
Q 018300 112 NFTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI 188 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~--~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~al 188 (358)
...|..+++++...+.... ..+|+. ..|.. ++++.+.+++.+..|.+.+ . -+|++++|+ +|+..++.++
T Consensus 87 ~~~P~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~LR~aia~~~~~~~g~~~~-~-~~I~it~Ga~~al~~~~~~l 158 (481)
T PTZ00377 87 SLFPADVVARAKEYLNAIGGGTGAYTD---SAGYP---FVRKAVAAFIERRDGVPKD-P-SDIFLTDGASSGIKLLLQLL 158 (481)
T ss_pred ccCCHHHHHHHHHHHHhCCCcccCcCc---ccCCH---HHHHHHHHHHHHhcCCCCC-h-hhEEEcCCHHHHHHHHHHHh
Confidence 3456788888765444321 112332 12333 5666666777666665431 1 256677776 5999999999
Q ss_pred c-cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCC-CCCHHHHHHHhhhc-----CCeEEEEcCCC
Q 018300 189 L-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG-LVDYDMLEKTAILF-----RPKLIIAGASA 261 (358)
Q Consensus 189 l-~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~iD~d~le~~i~~~-----~~klIi~~~s~ 261 (358)
+ +|||+|++++|.|.++.. .+...|. ++++++++++++ .+|++++++.+... ++|+|++..++
T Consensus 159 ~~~~gD~Vlv~~P~y~~y~~--------~~~~~g~--~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~ 228 (481)
T PTZ00377 159 IGDPSDGVMIPIPQYPLYSA--------AITLLGG--KQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPG 228 (481)
T ss_pred ccCCCCEEEECCCCchhHHH--------HHHHcCC--EEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCC
Confidence 8 799999999987665432 2345565 455566665444 79999999987542 68876665556
Q ss_pred CC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccC--CccCC------CC-C---C-c-EEEEcCcCcC---ccC
Q 018300 262 YP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAAS--VVADP------FK-Y---C-D-VVTTTTHKSL---RGP 319 (358)
Q Consensus 262 ~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g--~~~~p------l~-g---a-D-iv~~S~hK~L---~Gp 319 (358)
|| ...+ +++|+++|+++|++||+|+++. .+.+.+ .+++. ++ . - . +++.|++|++ +|.
T Consensus 229 NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~-~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~Gl 307 (481)
T PTZ00377 229 NPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQ-ENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGR 307 (481)
T ss_pred CCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhH-hhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcC
Confidence 55 4555 7889999999999999999975 444422 11111 11 1 0 1 5678999974 589
Q ss_pred cEEEEEE
Q 018300 320 RGGMIFF 326 (358)
Q Consensus 320 ~GG~I~~ 326 (358)
|.|++++
T Consensus 308 RiG~~~~ 314 (481)
T PTZ00377 308 RGGYFEL 314 (481)
T ss_pred ceEEEEE
Confidence 9999987
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.4e-14 Score=150.91 Aligned_cols=165 Identities=21% Similarity=0.203 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh----ccCCC----EEEecCCCCCcccccccccchhccc
Q 018300 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI----LKPHD----RIMGLDLPHGGHLSHGFMTPKRRVS 218 (358)
Q Consensus 147 ~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al----l~pGD----~Vl~~~~~~ggh~s~~~~~~~~~~~ 218 (358)
.+++...++++++++|.+. +.+++.+|+.|+++.+.++ .++|| +|++++..|++++. .+.
T Consensus 541 l~~i~e~q~~l~eltG~d~----~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~--------sa~ 608 (954)
T PRK05367 541 RELIDQLEAWLAEITGYDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPA--------SAV 608 (954)
T ss_pred HHHHHHHHHHHHHHHCCCC----EEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHH--------HHH
Confidence 3556667899999999985 4677777777776655443 36776 58888876665532 234
Q ss_pred cCCceEEEEeceecCCCCCCCHHHHHHHhhhc--CCeEEEEcCCC-CCC-CCCHHHHHHHHHHcCCEEEEeccccccccc
Q 018300 219 GTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASA-YPR-DFDYPRMRQIADAVGALLMMDMAHISGLVA 294 (358)
Q Consensus 219 ~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~--~~klIi~~~s~-~~~-~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~ 294 (358)
..|. +++.++.+ .++.+|+++|++.++.+ ++.+|++..++ ++. ..|+++|+++||++|+++++|+||..+++.
T Consensus 609 ~~G~--~vv~v~~d-~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~ 685 (954)
T PRK05367 609 MAGM--KVVVVACD-ENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVG 685 (954)
T ss_pred HCCC--EEEEECCC-CCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccC
Confidence 5565 44454455 35899999999998754 34455554444 444 368999999999999999999999866553
Q ss_pred cCCccCCCC-CCcEEEEcCcCcCccCcE------EEEEEeCC
Q 018300 295 ASVVADPFK-YCDVVTTTTHKSLRGPRG------GMIFFKKD 329 (358)
Q Consensus 295 ~g~~~~pl~-gaDiv~~S~hK~L~Gp~G------G~I~~~~~ 329 (358)
+..|.+ |+|++++|+||||++|.| |++.+++.
T Consensus 686 ---l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~ 724 (954)
T PRK05367 686 ---LARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAH 724 (954)
T ss_pred ---CCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeeccc
Confidence 223445 999999999999976654 57777753
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=134.33 Aligned_cols=194 Identities=19% Similarity=0.152 Sum_probs=129.9
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~pG 192 (358)
+++.+++++...+.. . ..||. .| .+++ ++.+++++|++++ +|.+++|+. ++..++.++++||
T Consensus 36 ~~~~~~~a~~~~~~~-~-~~y~~----~g---~~~l----r~~ia~~~~~~~~----~I~~~~G~~~~l~~~~~~~~~~g 98 (352)
T PRK03321 36 PLPSVRAAIARAAAG-V-NRYPD----MG---AVEL----RAALAEHLGVPPE----HVAVGCGSVALCQQLVQATAGPG 98 (352)
T ss_pred CCHHHHHHHHHHHHh-c-CcCCC----Cc---HHHH----HHHHHHHhCcCHH----HEEECCCHHHHHHHHHHHhcCCC
Confidence 577899998876542 1 23432 12 2233 4557888898764 466788876 6777778889999
Q ss_pred CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHH
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPR 270 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~ 270 (358)
|+|+++.+.+..+.. .....|. +++.+++++ ++.+|++++++.+.. ++|+|++..+++ |...+.++
T Consensus 99 d~Vli~~p~y~~~~~--------~~~~~g~--~~~~v~~~~-~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~ 166 (352)
T PRK03321 99 DEVIFAWRSFEAYPI--------LVQVAGA--TPVQVPLTP-DHTHDLDAMAAAITD-RTRLIFVCNPNNPTGTVVTPAE 166 (352)
T ss_pred CEEEeCCCCHHHHHH--------HHHHcCC--EEEEccCCC-CCCCCHHHHHHhhcc-CCCEEEEeCCCCCcCCCcCHHH
Confidence 999998765433211 1234455 445555653 367899999998764 788887765555 46789999
Q ss_pred HHHHHHH--cCCEEEEeccccccccccCCccCCCC----CCc-EEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHh
Q 018300 271 MRQIADA--VGALLMMDMAHISGLVAASVVADPFK----YCD-VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 271 I~~ia~e--~g~~livD~Ah~~Gl~~~g~~~~pl~----gaD-iv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
|.++|++ +|+++++|++|. ++...+..+.++. .-+ +++.|++|.| +|.|.|++++++ ++.+.+.
T Consensus 167 l~~l~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~------~~~~~~~ 239 (352)
T PRK03321 167 LARFLDAVPADVLVVLDEAYV-EYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHP------EVIAALR 239 (352)
T ss_pred HHHHHHhCCCCeEEEEechHH-HhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCH------HHHHHHH
Confidence 9999987 599999999976 4443332222221 123 6678999997 467789999876 5666665
Q ss_pred hc
Q 018300 342 NA 343 (358)
Q Consensus 342 ~~ 343 (358)
..
T Consensus 240 ~~ 241 (352)
T PRK03321 240 KV 241 (352)
T ss_pred Hh
Confidence 43
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-13 Score=133.10 Aligned_cols=207 Identities=18% Similarity=0.125 Sum_probs=137.7
Q ss_pred cccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-H
Q 018300 104 SLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-A 180 (358)
Q Consensus 104 ~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A 180 (358)
-++|-..+| .+++.+++++.+.+......+||. .|. .+ .++.+++++|.+.. .+|.+++|+. +
T Consensus 28 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~----~~~---~~----lr~~ia~~~~~~~~---~~I~~t~G~~~~ 93 (356)
T PRK04870 28 MVKLDAMENPYRLPAELRAELGERLAEVALNRYPD----PRA---AA----LKAALRAAMGVPAG---ADVLLGNGSDEL 93 (356)
T ss_pred ceeCcCCCCCCCCCHHHHHHHHHHhhccccccCCC----CCH---HH----HHHHHHHHhCcCCC---CcEEEcCCHHHH
Confidence 344544455 468999999987664322234443 121 12 35557888888643 2577788875 7
Q ss_pred HHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCC
Q 018300 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (358)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s 260 (358)
+..++.++++|||+|+++++.|.++.. .+...|. ++++++++ +++.+|++++++.+...++|+|++..+
T Consensus 94 i~~~~~~~~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~~~~i~~~-~~~~~d~~~l~~~~~~~~~~~v~l~~p 162 (356)
T PRK04870 94 IQLLALACAKPGATVLAPEPGFVMYRM--------SAKLAGL--EFVGVPLT-ADFTLDLPAMLAAIAEHRPALVFLAYP 162 (356)
T ss_pred HHHHHHHhcCCCCEEEECCCCHHHHHH--------HHHHcCC--EEEEecCC-CCCCCCHHHHHHHhhcCCCCEEEEcCC
Confidence 888888889999999999875544321 2345565 45566666 346899999999886567899888766
Q ss_pred CCC--CCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCc-CccCcEEEEEEeCCCCchhH
Q 018300 261 AYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKS-LRGPRGGMIFFKKDPVLGVE 335 (358)
Q Consensus 261 ~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~-L~Gp~GG~I~~~~~~~~~~~ 335 (358)
++| ...+.+++.++++..++++++|+++. .+......+ .+. .--+++.|++|+ ++|.|.|++++++ +
T Consensus 163 ~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~-~~~~~~~~~-~~~~~~~vi~~~S~SK~~~~GlRiG~~i~~~------~ 234 (356)
T PRK04870 163 NNPTGNLFDDADVERIIEAAPGLVVVDEAYQ-PFAGDSWLP-RLARFPNLLVMRTVSKLGLAGLRLGYLAGHP------A 234 (356)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEEECCch-hhcCcchHH-HHhhCCCEEEEecchhhhhHHHhhhhhhCCH------H
Confidence 654 57888888888887799999999975 332211111 122 123778999993 3677889999876 4
Q ss_pred HHHHHhhc
Q 018300 336 LESAINNA 343 (358)
Q Consensus 336 ~~~~i~~~ 343 (358)
+.+++...
T Consensus 235 ~i~~~~~~ 242 (356)
T PRK04870 235 WIAELDKV 242 (356)
T ss_pred HHHHHHHc
Confidence 55555543
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.7e-13 Score=137.03 Aligned_cols=203 Identities=16% Similarity=0.113 Sum_probs=129.4
Q ss_pred ccccccCCCCcHHHHHHHhhhhhccc---CCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HH
Q 018300 105 LELIASENFTSRAVMEAVGSCLTNKY---SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA 180 (358)
Q Consensus 105 i~lias~n~~s~~V~~al~~~l~~~~---~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A 180 (358)
|++-+.+...|..+++.....+.... ..+|.. ..|.+ ++.+.+.+++.+..|.+.+ + -+|++++|+ +|
T Consensus 132 i~~~~~~~~fp~~~i~~a~~~l~~~~~~~~~~Y~~---s~G~~---~lReaIA~~~~~r~g~~~~-p-e~I~iT~Ga~~a 203 (534)
T PLN02231 132 LDKSETHGLFSADAIERAWQILDQIPGRATGAYSH---SQGIK---GLRDAIAAGIEARDGFPAD-P-NDIFLTDGASPA 203 (534)
T ss_pred CCCCCccccCCHHHHHHHHHHHHhcCCccccCcCC---CCCcH---HHHHHHHHHHHhccCCCCC-c-ccEEEeCCHHHH
Confidence 44434444456677666665554421 122332 22433 5666667777776675421 1 246667776 59
Q ss_pred HHHHHHHhc-cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC-CCCCHHHHHHHhhhc-----CCe
Q 018300 181 NFEVYTAIL-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILF-----RPK 253 (358)
Q Consensus 181 ~~~a~~all-~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~iD~d~le~~i~~~-----~~k 253 (358)
+..++.+++ .+||.|++++|.|..+.. .+...|. +++++++++++ ..+|+++|++.++.. ++|
T Consensus 204 i~~~~~~l~~~~gd~Vli~~P~Y~~y~~--------~~~~~g~--~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k 273 (534)
T PLN02231 204 VHMMMQLLIRSEKDGILCPIPQYPLYSA--------SIALHGG--TLVPYYLDEATGWGLEISELKKQLEDARSKGITVR 273 (534)
T ss_pred HHHHHHHhccCCCCEEEEeCCCChhHHH--------HHHHcCC--EEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeE
Confidence 999999987 489999999987766532 2344565 45666677543 489999999987642 578
Q ss_pred EEEEcCCCCC--CCC---CHHHHHHHHHHcCCEEEEecccccccccc-CCccCCC---C---C---Cc---EEEEcCcCc
Q 018300 254 LIIAGASAYP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAA-SVVADPF---K---Y---CD---VVTTTTHKS 315 (358)
Q Consensus 254 lIi~~~s~~~--~~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~~~~pl---~---g---aD---iv~~S~hK~ 315 (358)
+|++..++|| ... .+++|+++|+++|++|++|+++. .+++. +....++ . + -| +++.|++|.
T Consensus 274 ~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~-~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~ 352 (534)
T PLN02231 274 ALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQ-ENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKG 352 (534)
T ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccch-hcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcc
Confidence 7766555655 344 47788999999999999999965 44442 2111111 0 1 12 456799996
Q ss_pred C---ccCcEEEEEE
Q 018300 316 L---RGPRGGMIFF 326 (358)
Q Consensus 316 L---~Gp~GG~I~~ 326 (358)
+ +|.|+|+++.
T Consensus 353 ~~g~pGlRiGy~~~ 366 (534)
T PLN02231 353 YYGECGKRGGYMEV 366 (534)
T ss_pred cccCCccceEEEEE
Confidence 5 5899999976
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-13 Score=131.60 Aligned_cols=203 Identities=19% Similarity=0.151 Sum_probs=132.6
Q ss_pred hcccccccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-
Q 018300 103 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP- 179 (358)
Q Consensus 103 ~~i~lias~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~- 179 (358)
.-+++-..+++ +++.+++++...+.. . ..|+.. . ..++ ++.+++++|++++ +|.+++|+.
T Consensus 33 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~-~~y~~~-----~--~~~l----r~~ia~~~~~~~~----~i~~t~G~~~ 95 (367)
T PRK02731 33 DIIKLASNENPLGPSPKAIEAIRAAADE-L-HRYPDG-----S--GFEL----KAALAEKFGVDPE----RIILGNGSDE 95 (367)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHh-h-cCCCCC-----c--HHHH----HHHHHHHhCcCHH----HEEEcCCHHH
Confidence 33455443343 578899988776532 2 234331 1 1234 4457788898764 466777775
Q ss_pred HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC
Q 018300 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (358)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~ 259 (358)
++..++.+++++||+|++.++.|..+.. .....|.. +++++.+ ++.+|++++++.+.. ++|+|++..
T Consensus 96 ~l~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~~--~~~~~~~--~~~~~~~~l~~~~~~-~~~~v~l~~ 162 (367)
T PRK02731 96 ILELLARAYLGPGDEVIYSEHGFAVYPI--------AAQAVGAK--PVEVPAK--DYGHDLDAMLAAVTP-RTRLVFIAN 162 (367)
T ss_pred HHHHHHHHhcCCCCEEEEecCCHHHHHH--------HHHHcCCe--EEEeccc--CCCCCHHHHHHHhCC-CCcEEEEeC
Confidence 6777788889999999999876543311 12345653 4444443 468899999998863 789888766
Q ss_pred CCC--CCCCCHHHHHHHHHHc--CCEEEEeccccccccccCCccCCC---C-C-CcEEEEcCcCcC--ccCcEEEEEEeC
Q 018300 260 SAY--PRDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPF---K-Y-CDVVTTTTHKSL--RGPRGGMIFFKK 328 (358)
Q Consensus 260 s~~--~~~~dl~~I~~ia~e~--g~~livD~Ah~~Gl~~~g~~~~pl---~-g-aDiv~~S~hK~L--~Gp~GG~I~~~~ 328 (358)
+++ |...+.+++.++++.+ |+++++|++|... ...+....++ + . -.+++.|++|.+ +|.|.|++++++
T Consensus 163 p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~-~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~ 241 (367)
T PRK02731 163 PNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEY-VRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPP 241 (367)
T ss_pred CCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHh-ccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCH
Confidence 655 5688999999999875 9999999997643 2222111112 1 1 236778999985 577889999876
Q ss_pred CCCchhHHHHHHhh
Q 018300 329 DPVLGVELESAINN 342 (358)
Q Consensus 329 ~~~~~~~~~~~i~~ 342 (358)
++.+++..
T Consensus 242 ------~~~~~l~~ 249 (367)
T PRK02731 242 ------EIIDALNR 249 (367)
T ss_pred ------HHHHHHHH
Confidence 55565554
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-12 Score=127.03 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=119.8
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHc--CCCCCCCcceEEeCC-CHHHHHHHHHHhc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF--NLDENKWGVNVQPLS-GSPANFEVYTAIL 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lf--g~~~~~~~v~V~~~S-Gt~A~~~a~~all 189 (358)
.+++.+.+++..... ...+|+. ..|.+ ++++.+.+++. .. +++++ +|.+++ |++|+..++.+++
T Consensus 43 ~~~~~~~~a~~~~~~--~~~~Y~~---~~g~~---~lr~~ia~~~~-~~~~~~~~~----~i~~t~G~~~al~~~~~~l~ 109 (397)
T PRK07568 43 KTPEVFFEAIKNYDE--EVLAYSH---SQGIP---ELREAFAKYYK-KWGIDVEPD----EILITNGGSEAILFAMMAIC 109 (397)
T ss_pred CCCHHHHHHHHHHhc--CCcCcCC---CCCCH---HHHHHHHHHHH-HhCCCCCcc----eEEEcCChHHHHHHHHHHhc
Confidence 457888888865432 1123332 12332 44444333333 12 34443 455555 5569999998999
Q ss_pred cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCC-C-CCHHHHHHHhhhcCCeEEEEcCCCCC--CC
Q 018300 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG-L-VDYDMLEKTAILFRPKLIIAGASAYP--RD 265 (358)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~-iD~d~le~~i~~~~~klIi~~~s~~~--~~ 265 (358)
+|||+|+++++.+..+.. .....|. ++.+++++++++ . .|++++++.+.. ++++|++..+++| ..
T Consensus 110 ~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~g~~~~~~~~l~~~~~~-~~~~v~i~~p~NPtG~~ 178 (397)
T PRK07568 110 DPGDEILVPEPFYANYNG--------FATSAGV--KIVPVTTKIEEGFHLPSKEEIEKLITP-KTKAILISNPGNPTGVV 178 (397)
T ss_pred CCCCEEEEecCCCccHHH--------HHHHcCC--EEEEeecCcccCCCCCCHHHHHHhcCc-cceEEEEECCCCCCCcc
Confidence 999999999876544321 1234465 344545543333 2 468999988754 6788877655554 34
Q ss_pred C---CHHHHHHHHHHcCCEEEEeccccccccccCC-ccCCCC--C-Cc--EEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 266 F---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK--Y-CD--VVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 266 ~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~~pl~--g-aD--iv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
. ++++|.++|+++|+++++|+++. ++...+. .++... + .+ +++.|++|++ +|.|.|++++.++
T Consensus 179 ~~~~~~~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~ 252 (397)
T PRK07568 179 YTKEELEMLAEIAKKHDLFLISDEVYR-EFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNK 252 (397)
T ss_pred CCHHHHHHHHHHHHHCCcEEEEeccch-hcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCH
Confidence 4 57899999999999999999965 4544332 222222 2 23 7788999997 4778899998643
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.7e-13 Score=131.02 Aligned_cols=208 Identities=18% Similarity=0.157 Sum_probs=138.9
Q ss_pred ccccccCC--CCcHHHHHHHhhhhhcc--cCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceEEeCCCH
Q 018300 105 LELIASEN--FTSRAVMEAVGSCLTNK--YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGS 178 (358)
Q Consensus 105 i~lias~n--~~s~~V~~al~~~l~~~--~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~--~~~~~~v~V~~~SGt 178 (358)
++|-..+| .+++.+++++...+... ...+||. .|. ..+++.+.+++.+.+|. +++ +|++++|+
T Consensus 29 i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~~Y~~----~g~---~~lr~aia~~~~~~~~~~~~~~----~I~it~G~ 97 (368)
T PRK03317 29 VRLNTNENPYPPSPALVADIAEAVAEAAAGLNRYPD----RDA---VALRADLAAYLTAQTGVGLTVE----NVWAANGS 97 (368)
T ss_pred eEecCCCCCCCCCHHHHHHHHHHHhhhhhhhccCCC----Cch---HHHHHHHHHHhhhhccCCCChh----hEEECCCH
Confidence 44543444 46888999998765431 1223442 122 34666666666665554 443 57778886
Q ss_pred H-HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEE
Q 018300 179 P-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA 257 (358)
Q Consensus 179 ~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~ 257 (358)
. ++..++.++++|||+|++..|.|.++.. .....|. ++++++.+ ++..+|++++++.+...++|+|++
T Consensus 98 ~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~--------~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~~~~~~~~~i~l 166 (368)
T PRK03317 98 NEILQQLLQAFGGPGRTALGFVPSYSMHPI--------IARGTHT--EWVEGPRA-ADFTLDVDAAVAAIAEHRPDVVFL 166 (368)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCChHHHHH--------HHHhcCC--eeEEcccC-CCCCCCHHHHHHHHhccCCCEEEE
Confidence 5 9999999999999999999887655422 2223443 45555444 345789999999887567888877
Q ss_pred cCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCC---C-CCc-EEEEcCcCcC--ccCcEEEEEEeC
Q 018300 258 GASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCD-VVTTTTHKSL--RGPRGGMIFFKK 328 (358)
Q Consensus 258 ~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~-gaD-iv~~S~hK~L--~Gp~GG~I~~~~ 328 (358)
..+++ |...+.+++.++++.+++++++|++|. ++...+. +..+ + .-+ +++.|++|.+ +|.|-|++++++
T Consensus 167 ~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~-~~~~~~~-~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~ 244 (368)
T PRK03317 167 TSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYA-EFRRSGT-PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAP 244 (368)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCch-hhcccCC-cCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCH
Confidence 66665 568899999999999999999999987 4432221 1111 1 123 6677999987 467779999876
Q ss_pred CCCchhHHHHHHhh
Q 018300 329 DPVLGVELESAINN 342 (358)
Q Consensus 329 ~~~~~~~~~~~i~~ 342 (358)
++.+++..
T Consensus 245 ------~~~~~l~~ 252 (368)
T PRK03317 245 ------AVVDALRL 252 (368)
T ss_pred ------HHHHHHHh
Confidence 56666654
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-13 Score=137.13 Aligned_cols=175 Identities=18% Similarity=0.150 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCC----cceEEeCCCHHHHHHHHHHh----cc-C-----CC-EEEecCCCCCcccccc
Q 018300 145 YIDELETLCQKRALAAFNLDENKW----GVNVQPLSGSPANFEVYTAI----LK-P-----HD-RIMGLDLPHGGHLSHG 209 (358)
Q Consensus 145 ~~~~lE~~~~~~la~lfg~~~~~~----~v~V~~~SGt~A~~~a~~al----l~-p-----GD-~Vl~~~~~~ggh~s~~ 209 (358)
...++|+.+.+|+++++|.+...+ +.-++.++||.||+.++.+. ++ . .. .|++++. +|.+.
T Consensus 119 ~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~---aH~Sv- 194 (490)
T PLN02880 119 AATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQ---THSAL- 194 (490)
T ss_pred ccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCC---chHHH-
Confidence 345799999999999999986321 11345567889998877543 11 1 12 3344443 45442
Q ss_pred cccchhccccCCce---EEEEeceecC-CCCCCCHHHHHHHhhhc-----CCeEEEE--cCCCCCCCCCHHHHHHHHHHc
Q 018300 210 FMTPKRRVSGTSIY---FESMPYRLDE-STGLVDYDMLEKTAILF-----RPKLIIA--GASAYPRDFDYPRMRQIADAV 278 (358)
Q Consensus 210 ~~~~~~~~~~~g~~---~~~~~~~~~~-~~~~iD~d~le~~i~~~-----~~klIi~--~~s~~~~~~dl~~I~~ia~e~ 278 (358)
.|++...|.. ++.++ +++ +++.+|+++|++.+++. .|-+|+. +.+.+|..-|+++|+++|+++
T Consensus 195 ----~Kaa~~lGlg~~~v~~Vp--~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~ 268 (490)
T PLN02880 195 ----QKACQIAGIHPENCRLLK--TDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSN 268 (490)
T ss_pred ----HHHHHHcCCCHHHEEEee--cCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHc
Confidence 1345566653 33444 553 35689999999988642 2444544 345567788999999999999
Q ss_pred CCEEEEeccccccccccCCcc---CCCCCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 279 GALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 279 g~~livD~Ah~~Gl~~~g~~~---~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
|++++||+||+.+....+.+. .-+++||.++.++|||+..|.+ |++++++.
T Consensus 269 ~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~ 323 (490)
T PLN02880 269 GMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDR 323 (490)
T ss_pred CCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCH
Confidence 999999999986644322111 1123789999999999999987 78887753
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-12 Score=127.36 Aligned_cols=191 Identities=19% Similarity=0.103 Sum_probs=123.1
Q ss_pred CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC------CCCCCcceEEeCC-CHHHHHHH
Q 018300 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL------DENKWGVNVQPLS-GSPANFEV 184 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~------~~~~~~v~V~~~S-Gt~A~~~a 184 (358)
-++++.+++++...+......+|+. ..|.. ++++ .++++++. +++ +|.+++ +++|+..+
T Consensus 47 ~~~~~~~~~~~~~~l~~~~~~~Y~~---~~g~~---~lr~----~ia~~l~~~~~~~~~~~----~ii~t~G~t~al~~~ 112 (403)
T TIGR01265 47 LRTDPEAEEAVKDALRSGKFNGYAP---SVGAL---AARE----AVAEYLSSDLPGKLTAD----DVVLTSGCSQAIEIC 112 (403)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCC---CCCCH---HHHH----HHHHHHHhhcCCCCCHH----HEEEecChHHHHHHH
Confidence 4678899999987775443333422 12322 3443 35555553 222 344454 56799999
Q ss_pred HHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhhcCCeEEEEcCCCCC
Q 018300 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYP 263 (358)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~~~~klIi~~~s~~~ 263 (358)
+.++.++||+|+++++.|.++.. .....|. ++.+++++++ ++.+|++++++.+.. +++++++..+++|
T Consensus 113 ~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~i~~p~NP 181 (403)
T TIGR01265 113 IEALANPGANILVPRPGFPLYDT--------RAAFSGL--EVRLYDLLPEKDWEIDLDGLEALADE-KTVAIVVINPSNP 181 (403)
T ss_pred HHHhCCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEecCCcccCCccCHHHHHHHhCc-CccEEEEecCCCC
Confidence 99999999999999886654311 2234455 3444445433 457999999988754 6777777655554
Q ss_pred --CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCC---C-CCc-EEEEcCcCcC--ccCcEEEEEEeC
Q 018300 264 --RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCD-VVTTTTHKSL--RGPRGGMIFFKK 328 (358)
Q Consensus 264 --~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~-gaD-iv~~S~hK~L--~Gp~GG~I~~~~ 328 (358)
...+ +++|.++|+++|+++++|+++. .+...+....++ + ... +++.|++|.+ +|.|-|+++..+
T Consensus 182 tG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~ 257 (403)
T TIGR01265 182 CGSVFSRDHLQKIAEVARKLGIPIIADEIYG-HMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHD 257 (403)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEcccc-ccccCCCCccchhhhccCCcEEEEeecccccCCCcceEEEEEEeC
Confidence 4554 8889999999999999999965 444333111122 2 222 6678999984 777889998854
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=6e-13 Score=134.30 Aligned_cols=158 Identities=18% Similarity=0.190 Sum_probs=112.2
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCC-CHHHHHHHHHHh-ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEece
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLS-GSPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~S-Gt~A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~ 230 (358)
.++++++++|++.+ ++.+++ |+.++.+++.++ +++||+|+++++.|+++..... ......|. ++..++
T Consensus 117 ~~~~la~l~g~~~~----~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~----~~~~~~G~--~~~~v~ 186 (447)
T PRK00451 117 YQTMICELTGMDVA----NASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLK----TYLKGQGI--EVVEVP 186 (447)
T ss_pred HHHHHHHHhCCCcc----eEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHH----HHHHhCCc--EEEEec
Confidence 45678999999874 454454 556787888887 5899999999876655432100 00112454 444555
Q ss_pred ecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-CCCCCCHHHHHHHHHHcCCEEEE--eccccccccccCCccCCCC-CCc
Q 018300 231 LDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMM--DMAHISGLVAASVVADPFK-YCD 306 (358)
Q Consensus 231 ~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-~~~~~dl~~I~~ia~e~g~~liv--D~Ah~~Gl~~~g~~~~pl~-gaD 306 (358)
+++ + .+|++++++.+++ ++++|++..++ +|...|+++|.++|+++|+++++ |.. +.|.. +.+-+ ++|
T Consensus 187 ~~~-~-~~d~~~l~~~i~~-~t~~v~l~~pn~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~-----~~~~~~~~D 257 (447)
T PRK00451 187 YED-G-VTDLEALEAAVDD-DTAAVVVQYPNFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLL-----KPPGEYGAD 257 (447)
T ss_pred CCC-C-CCCHHHHHHhcCC-CeEEEEEECCCCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccC-----CCcccCCCC
Confidence 664 3 8999999998864 68888776544 57788999999999999999998 533 33332 22334 899
Q ss_pred EEEEcCcCc-----CccCcEEEEEEeCC
Q 018300 307 VVTTTTHKS-----LRGPRGGMIFFKKD 329 (358)
Q Consensus 307 iv~~S~hK~-----L~Gp~GG~I~~~~~ 329 (358)
++++|+||+ ++||+.|+++++++
T Consensus 258 ~~~~s~~k~~~~~~~~Gpg~G~l~~~~~ 285 (447)
T PRK00451 258 IVVGEGQPLGIPLSFGGPYLGFFATRKK 285 (447)
T ss_pred EEEECCCcCCCCCCCCCCCchHHHhhHH
Confidence 999999996 68898899988774
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.1e-13 Score=135.80 Aligned_cols=167 Identities=16% Similarity=0.114 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHcC----CCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccc-cCC
Q 018300 148 ELETLCQKRALAAFN----LDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTS 221 (358)
Q Consensus 148 ~lE~~~~~~la~lfg----~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~-~~g 221 (358)
++.+.+.+++.+.+| ++++ +|++++|+ +|+..++.++++|||.|++++|.|.++.. .+. ..|
T Consensus 98 ~LR~aiA~~l~~~~g~~v~v~pe----~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~--------~~~~~~G 165 (496)
T PLN02376 98 KFRQAIAHFMGKARGGKVTFDPE----RVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDR--------DLRWRTG 165 (496)
T ss_pred HHHHHHHHHHHHHhCCCCcCChh----hEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHH--------HHHhhCC
Confidence 577777777777777 5554 46666665 59999999999999999999987776532 122 245
Q ss_pred ceEEEEeceecCC-CCCCCHHHHHHHhh-----hcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccc
Q 018300 222 IYFESMPYRLDES-TGLVDYDMLEKTAI-----LFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 222 ~~~~~~~~~~~~~-~~~iD~d~le~~i~-----~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~ 290 (358)
. ++++++++++ +..+|++++++.++ ..++|+|++..+++| ...+ +++|.++|+++|+.||+|++|+
T Consensus 166 ~--~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~- 242 (496)
T PLN02376 166 V--EIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYA- 242 (496)
T ss_pred C--EEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCcc-
Confidence 5 4556556532 35789999876532 136787777656655 4555 6678889999999999999976
Q ss_pred cccccC-CccCC--C----C--CC--c--EEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 291 GLVAAS-VVADP--F----K--YC--D--VVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 291 Gl~~~g-~~~~p--l----~--ga--D--iv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
.+++.+ .+++. + + +. + +++.|++|.| +|.|.|++++.++
T Consensus 243 ~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~ 296 (496)
T PLN02376 243 ATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFND 296 (496)
T ss_pred ccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCH
Confidence 333332 12211 1 1 11 2 3478999987 7889999998654
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.9e-13 Score=131.46 Aligned_cols=201 Identities=15% Similarity=0.102 Sum_probs=130.3
Q ss_pred ccccccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEe-CCCHH-H
Q 018300 105 LELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGSP-A 180 (358)
Q Consensus 105 i~lias~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~-~SGt~-A 180 (358)
++|-..+|+ ++|.+.+++...+.. . .+||.. . ..+ .++.+++++|++++ ++.+ ++|+. +
T Consensus 37 i~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~y~~~------~-~~~----lr~~ia~~~~~~~~----~i~~~~~Ga~~~ 99 (361)
T PRK00950 37 IKLGSNENPLGPSPKAVEAIEKELSK-I-HRYPEP------D-APE----LREALSKYTGVPVE----NIIVGGDGMDEV 99 (361)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHh-h-cCCCCC------C-HHH----HHHHHHHHhCCCHH----HEEEeCCCHHHH
Confidence 555444443 578888888765542 1 234331 1 123 34557888998874 3555 67865 7
Q ss_pred HHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCC
Q 018300 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (358)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s 260 (358)
+..++.++++|||+|+++++.+..+.. .....|.. +..++.+ +++.+|++++++.+.. ++++|++..+
T Consensus 100 i~~~~~~~~~~gd~vlv~~p~y~~~~~--------~~~~~g~~--~~~~~~~-~~~~~~~~~l~~~~~~-~~~~v~~~~p 167 (361)
T PRK00950 100 IDTLMRTFIDPGDEVIIPTPTFSYYEI--------SAKAHGAK--PVYAKRE-EDFSLDVDSVLNAITE-KTKVIFLCTP 167 (361)
T ss_pred HHHHHHHhcCCCCEEEEcCCChHHHHH--------HHHHcCCE--EEEeecC-CCCCcCHHHHHHHhcc-CCCEEEEeCC
Confidence 778888889999999998875543211 22344653 4444443 3458999999988753 6888877555
Q ss_pred CC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCc--EEEEcCcCcCc--cCcEEEEEEeCCCCchh
Q 018300 261 AY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCD--VVTTTTHKSLR--GPRGGMIFFKKDPVLGV 334 (358)
Q Consensus 261 ~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaD--iv~~S~hK~L~--Gp~GG~I~~~~~~~~~~ 334 (358)
++ |...+.+++.++|+++|+++++|++|. ++. .......++..| +++.|++|.++ |.|.|++++++
T Consensus 168 ~nptG~~~~~~~l~~l~~~~~~~li~De~y~-~~~-~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~------ 239 (361)
T PRK00950 168 NNPTGNLIPEEDIRKILESTDALVFVDEAYV-EFA-EYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPE------ 239 (361)
T ss_pred CCCCCCCcCHHHHHHHHHHCCcEEEEECchh-hhC-ccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCH------
Confidence 54 568899999999999999999999986 333 111111111222 67789999874 56779999876
Q ss_pred HHHHHHhh
Q 018300 335 ELESAINN 342 (358)
Q Consensus 335 ~~~~~i~~ 342 (358)
++.+.+..
T Consensus 240 ~~~~~~~~ 247 (361)
T PRK00950 240 WLIDYYMR 247 (361)
T ss_pred HHHHHHHH
Confidence 45555544
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=129.55 Aligned_cols=194 Identities=17% Similarity=0.110 Sum_probs=124.6
Q ss_pred CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceEEeCCC-HHHHHHHHHHh
Q 018300 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSG-SPANFEVYTAI 188 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg--~~~~~~~v~V~~~SG-t~A~~~a~~al 188 (358)
..+++.+++++...+......+|.. ..|.. ++++.+.+++.+. + ++.+ +|.+++| ++|+..++.++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g~~---~lr~aia~~~~~~-~~~~~~~----~i~~t~G~~~al~~~~~~l 115 (401)
T TIGR01264 47 LPTDPEVMQAMKDSLDSGKYNGYAP---TVGAL---SAREAIASYYHNP-DGPIEAD----DVVLCSGCSHAIEMCIAAL 115 (401)
T ss_pred CCCCHHHHHHHHHHHhccCCCCCCC---CCCCH---HHHHHHHHHHhhc-CCCCCHH----HEEECcChHHHHHHHHHHh
Confidence 3568889999887665432223422 12332 4444433333321 2 3332 3555655 56999999999
Q ss_pred ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--C
Q 018300 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--D 265 (358)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~ 265 (358)
+++||+|+++++.|..+.. .....|. ++.+++++++ +..+|++++++.+.. ++++|++..+++|+ .
T Consensus 116 ~~~gd~v~i~~P~y~~~~~--------~~~~~g~--~v~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~NPtG~~ 184 (401)
T TIGR01264 116 ANAGQNILVPRPGFPLYET--------LAESMGI--EVKLYNLLPDKSWEIDLKQLESLIDE-KTAALIVNNPSNPCGSV 184 (401)
T ss_pred CCCCCEEEEeCCCChhHHH--------HHHHcCC--EEEEeecCCccCCCCCHHHHHHHhcc-CceEEEEcCCCCCCCCC
Confidence 9999999999876554321 2344565 4445445433 457999999987754 67888886667654 4
Q ss_pred C---CHHHHHHHHHHcCCEEEEeccccccccccCCccCCC---CC-C-cEEEEcCcCc--CccCcEEEEEEeC
Q 018300 266 F---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY-C-DVVTTTTHKS--LRGPRGGMIFFKK 328 (358)
Q Consensus 266 ~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~g-a-Div~~S~hK~--L~Gp~GG~I~~~~ 328 (358)
. ++++|+++|+++|+++++|+++. .+...+....++ .. . -+++.|++|+ ++|.|-|++++.+
T Consensus 185 ~~~~~~~~l~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~ 256 (401)
T TIGR01264 185 FSRQHLEEILAVAERQCLPIIADEIYG-DMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHD 256 (401)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEhhhh-hhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEecC
Confidence 4 48889999999999999999965 554433211122 11 1 2678999997 4788899999874
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=145.13 Aligned_cols=164 Identities=18% Similarity=0.141 Sum_probs=115.0
Q ss_pred HHHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEece
Q 018300 152 LCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (358)
Q Consensus 152 ~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~ 230 (358)
.+++.++++||++.. .+.++||+ +|.+++.++++|||+|++.. ++|.|... .++.++|....++.-.
T Consensus 178 eAq~~AA~~fgAd~t-----yFlvNGTS~gn~a~i~a~~~~Gd~VLvdR---N~HKSv~h----gaLiLsGa~PVYl~P~ 245 (720)
T PRK13578 178 DAQKHAAKVFNADKT-----YFVLNGTSASNKVVTNALLTPGDLVLFDR---NNHKSNHH----GALIQAGATPVYLETA 245 (720)
T ss_pred HHHHHHHHHhCCCce-----EEEeCChhHHHHHHHHHhcCCCCEEEeec---ccHHHHHH----HHHHHcCCeEEEeecc
Confidence 367789999999984 34456665 99999999999999999865 57766211 0245677643333222
Q ss_pred ecCCCC---CCCHHH-----HHHHhhhc--------C-CeEEEE-cCCCCCCCCCHHHHHHH-HHHcCCEEEEecccccc
Q 018300 231 LDESTG---LVDYDM-----LEKTAILF--------R-PKLIIA-GASAYPRDFDYPRMRQI-ADAVGALLMMDMAHISG 291 (358)
Q Consensus 231 ~~~~~~---~iD~d~-----le~~i~~~--------~-~klIi~-~~s~~~~~~dl~~I~~i-a~e~g~~livD~Ah~~G 291 (358)
.++ .| .|+.++ |++.+.++ + .|++++ +++.+|...|+++|+++ ++.++ +|++|+||...
T Consensus 246 ~n~-~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah 323 (720)
T PRK13578 246 RNP-FGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCD-YILFDSAWVGY 323 (720)
T ss_pred ccc-cCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceeecHHHHHHHhhccCC-cEEEeCcchhh
Confidence 222 22 456544 88877654 2 366655 45557999999999998 78888 99999999976
Q ss_pred ccccCC---cc-CCCC-CCc----EEEEcCcCcCccC-cEEEEEEeCC
Q 018300 292 LVAASV---VA-DPFK-YCD----VVTTTTHKSLRGP-RGGMIFFKKD 329 (358)
Q Consensus 292 l~~~g~---~~-~pl~-gaD----iv~~S~hK~L~Gp-~GG~I~~~~~ 329 (358)
+.+.+. +| ..++ |+| +++.|+||+|++. ++.+|..+++
T Consensus 324 ~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~ 371 (720)
T PRK13578 324 EQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDN 371 (720)
T ss_pred hccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCc
Confidence 655442 22 3345 899 9999999999887 4577777654
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-13 Score=131.07 Aligned_cols=154 Identities=24% Similarity=0.278 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHH---HHHHh-ccCC----CEEEecCCCCCcccccccccchhccccC
Q 018300 149 LETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE---VYTAI-LKPH----DRIMGLDLPHGGHLSHGFMTPKRRVSGT 220 (358)
Q Consensus 149 lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~---a~~al-l~pG----D~Vl~~~~~~ggh~s~~~~~~~~~~~~~ 220 (358)
+-...++|++++.|.+. +.+|+.+|+++-++ ++.++ -..| ++||+++..||-++. .+.+.
T Consensus 110 li~~Lq~~L~~ITG~Da----vsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPA--------SAam~ 177 (496)
T COG1003 110 LIYELQEWLKEITGMDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPA--------SAAMA 177 (496)
T ss_pred HHHHHHHHHHHhcCCce----eeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChh--------hHhhc
Confidence 33346789999999998 68999999975444 44444 2333 578999887776543 22344
Q ss_pred CceEEEEeceecCCCCCCCHHHHHHHhhhcCCe-EEEEcCCCCC-CCCCHHHHHHHHHHcCCEEEEeccccccccccCCc
Q 018300 221 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPK-LIIAGASAYP-RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 298 (358)
Q Consensus 221 g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~k-lIi~~~s~~~-~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~ 298 (358)
| ++++.++.+ ++|.+|+|+|++++.+ ++. +++++++..| ...++.+|+++.+++|..|..|+|...++++ .
T Consensus 178 G--~~VV~V~~~-~~G~VDlddLk~k~~~-~~AalMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG---~ 250 (496)
T COG1003 178 G--FKVVVVKCD-ENGNVDLDDLRAKAED-NLAALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVG---L 250 (496)
T ss_pred C--ceEEEEecC-CCCCccHHHHHHHhcc-ceeEEEeccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhhc---c
Confidence 5 577777777 5789999999999875 554 4555555556 4678999999999999999999998776653 2
Q ss_pred cCCCC-CCcEEEEcCcCcCccCcE
Q 018300 299 ADPFK-YCDVVTTTTHKSLRGPRG 321 (358)
Q Consensus 299 ~~pl~-gaDiv~~S~hK~L~Gp~G 321 (358)
..|-+ |+|++-..+||||+.|.|
T Consensus 251 ~rPGd~G~DV~HlNLHKTF~iPHG 274 (496)
T COG1003 251 ARPGDMGFDVVHLNLHKTFCIPHG 274 (496)
T ss_pred ccccccccceEEeecccccccCCC
Confidence 34556 999999999999977765
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-12 Score=126.05 Aligned_cols=215 Identities=16% Similarity=0.109 Sum_probs=133.8
Q ss_pred hcccccccChHHHHHHHHHHHHh-hhcccccccC--CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHH
Q 018300 79 VDYSLGEADPEVCEIITKEKERQ-FKSLELIASE--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK 155 (358)
Q Consensus 79 ~~~~l~~~d~~~~~~i~~e~~~~-~~~i~lias~--n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~ 155 (358)
++.++...++..+..+....... ...++|-.++ ...++.+++++...... .+|+. ..|.+ ++++.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~---~~Y~~---~~G~~---~lr~~ia~ 73 (364)
T PRK07865 3 VSARLPDFPWDTLAPAKATAAAHPDGIVDLSVGTPVDPVPPVIQEALAAAADA---PGYPT---TAGTP---ELREAIVG 73 (364)
T ss_pred ccccCCCccHHHHHHHHHHHHhcCCCEEEcCCCCCCCCCCHHHHHHHHHHHhh---CCCCC---ccCCH---HHHHHHHH
Confidence 35677788887777665444332 2445554332 23367788888654321 13432 12333 56666777
Q ss_pred HHHHHcCCC---CCCCcceEEeCCCHH-HHHHHHHHh-ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEece
Q 018300 156 RALAAFNLD---ENKWGVNVQPLSGSP-ANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (358)
Q Consensus 156 ~la~lfg~~---~~~~~v~V~~~SGt~-A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~ 230 (358)
++.+.+|.+ ++ +|.+++|+. |+..++..+ ++|||+|++.++.|.++.. .+...|. +++.++
T Consensus 74 ~l~~~~~~~~~~~~----~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~ 139 (364)
T PRK07865 74 WLARRRGVTGLDPA----AVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEV--------GARLAGA--TVVRAD 139 (364)
T ss_pred HHHHHcCCCCCCcc----cEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHH--------HHHhcCC--EEEecC
Confidence 777776754 43 577788765 777777777 7999999999886655422 2234454 344432
Q ss_pred ecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--
Q 018300 231 LDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-- 303 (358)
Q Consensus 231 ~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-- 303 (358)
+++++++ .++++|++..+++| ...+ +++|.++|+++|++|++|++|. .+...+.....+.
T Consensus 140 --------~~~~l~~----~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~ 206 (364)
T PRK07865 140 --------SLTELGP----QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYL-ELGWDAEPVSILDPR 206 (364)
T ss_pred --------ChhhCCc----ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-hhccCCCCCcccccc
Confidence 2233322 46888888666665 3444 6788889999999999999976 3443331112111
Q ss_pred ------CCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 304 ------YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 304 ------gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
.-.+++.|++|.+ +|.|.|+++++++
T Consensus 207 ~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~ 240 (364)
T PRK07865 207 VCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPA 240 (364)
T ss_pred ccCCccceEEEEeechhccCCCceeeEEEecCHH
Confidence 1238899999986 6888999998763
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9e-13 Score=129.02 Aligned_cols=193 Identities=18% Similarity=0.126 Sum_probs=128.5
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pG 192 (358)
+++.|++++...+.. . ..||. .|. .+ .++.++++++++++ +|.+++|+ +++..++.+++++|
T Consensus 43 ~~~~v~~a~~~~~~~-~-~~~p~----~g~---~~----lr~~ia~~~~~~~~----~i~~t~G~~~~l~~~~~~~~~~g 105 (359)
T PRK03158 43 PSPKVKEAIAAHLDE-L-ALYPD----GYA---PE----LRTKVAKHLGVDEE----QLLFGAGLDEVIQMISRALLNPG 105 (359)
T ss_pred CCHHHHHHHHHHHHH-h-hcCCC----CcH---HH----HHHHHHHHhCCCHH----HEEECCCHHHHHHHHHHHHhCCC
Confidence 688899998765532 1 11222 121 23 34557788898764 46667766 58888888899999
Q ss_pred CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHH
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPR 270 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~ 270 (358)
|+|++.++.|.++.. .....|..+ ..++++ ++.+|++++++.+.. ++++|++..+++ |...+.++
T Consensus 106 d~v~~~~p~y~~~~~--------~~~~~g~~~--~~~~~~--~~~~d~~~l~~~~~~-~~~~v~i~~p~NPtG~~~~~~~ 172 (359)
T PRK03158 106 TNTVMAEPTFSQYRH--------NAIIEGAEV--REVPLK--DGGHDLEAMLKAIDE-QTKIVWICNPNNPTGTYVNHEE 172 (359)
T ss_pred CEEEEcCCCHHHHHH--------HHHHcCCeE--EEEecC--CCCcCHHHHHHhcCC-CCCEEEEeCCCCCCCCCCCHHH
Confidence 999999887655321 123446544 444454 457899999887754 788887765565 45788999
Q ss_pred HHHHHHH--cCCEEEEeccccccccccCCccCCC---C--CCcEEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHh
Q 018300 271 MRQIADA--VGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 271 I~~ia~e--~g~~livD~Ah~~Gl~~~g~~~~pl---~--gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
|.++++. +|+++++|++|.. +...+..+..+ + .-.+++.|++|++ +|.|.|++++++ ++.+++.
T Consensus 173 l~~~~~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~------~~~~~~~ 245 (359)
T PRK03158 173 LLSFLESVPSHVLVVLDEAYYE-YVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASE------ELIEKLN 245 (359)
T ss_pred HHHHHHhCCCCcEEEEECchHh-hcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCH------HHHHHHH
Confidence 9998887 5999999999763 33222222221 1 2347789999997 477889999876 4556555
Q ss_pred hc
Q 018300 342 NA 343 (358)
Q Consensus 342 ~~ 343 (358)
..
T Consensus 246 ~~ 247 (359)
T PRK03158 246 IA 247 (359)
T ss_pred Hh
Confidence 43
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-12 Score=131.85 Aligned_cols=167 Identities=16% Similarity=0.144 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHcC----CCCCCCcceEEeCCCHH-HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccc-cCC
Q 018300 148 ELETLCQKRALAAFN----LDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTS 221 (358)
Q Consensus 148 ~lE~~~~~~la~lfg----~~~~~~~v~V~~~SGt~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~-~~g 221 (358)
++.+.+.+++.+.+| ++++ +|++++|+. ++..++.++++|||.|++++|.|.++.. .+. ..|
T Consensus 90 ~LR~aiA~~l~~~~~~~~~v~~~----~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~--------~~~~~~g 157 (468)
T PLN02450 90 AFKNALAEFMSEIRGNKVTFDPN----KLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDR--------DLKWRTG 157 (468)
T ss_pred HHHHHHHHHHHHhhCCCCCcChH----HeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHH--------HHhhcCC
Confidence 466666677766666 3443 467777765 8999999999999999999987765422 122 345
Q ss_pred ceEEEEeceecC-CCCCCCHHHHHHHhhh-----cCCeEEEEcCCCCCC--CCC---HHHHHHHHHHcCCEEEEeccccc
Q 018300 222 IYFESMPYRLDE-STGLVDYDMLEKTAIL-----FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 222 ~~~~~~~~~~~~-~~~~iD~d~le~~i~~-----~~~klIi~~~s~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~ 290 (358)
. +++++++++ ++..+|++++++.+.. .++|+|++..++||+ ..+ +++|.++|+++|++||+|++++
T Consensus 158 ~--~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~- 234 (468)
T PLN02450 158 V--EIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYS- 234 (468)
T ss_pred c--EEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEcccc-
Confidence 4 556666653 3347889999887653 368887776666654 444 6778889999999999999965
Q ss_pred cccccC-CccCCCC-----------CCc--EEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 291 GLVAAS-VVADPFK-----------YCD--VVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 291 Gl~~~g-~~~~pl~-----------gaD--iv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
.+.+.+ .+.+.+. ..+ +++.|++|.+ +|.|.|++++.++
T Consensus 235 ~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~ 289 (468)
T PLN02450 235 GTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDE 289 (468)
T ss_pred ccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCH
Confidence 333332 1111111 011 6788999986 7889999999764
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=127.80 Aligned_cols=200 Identities=20% Similarity=0.148 Sum_probs=131.0
Q ss_pred hcccccccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-H
Q 018300 103 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P 179 (358)
Q Consensus 103 ~~i~lias~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~ 179 (358)
.-++|-.+++. +++.+++++.+.+.... .+||.. |. .+ .++.++++++++++ +|.+++|+ +
T Consensus 25 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~-~~y~~~----~~---~~----lr~aia~~~~~~~~----~I~it~G~~~ 88 (353)
T PRK05387 25 KLIKLNTNENPYPPSPKVLEAIRAALGDDL-RLYPDP----NA---DA----LRQAIAAYYGLDPE----QVFVGNGSDE 88 (353)
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHhhhhh-hcCCCC----cH---HH----HHHHHHHHhCCCHH----HEEEcCCHHH
Confidence 33556555553 47889999877654322 234331 11 12 45567888998774 46677766 5
Q ss_pred HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC
Q 018300 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (358)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~ 259 (358)
|+..++.++++|||+|++++|.|..+.. .....|. ++.+++++ +++.+|++++++ ..++|++..
T Consensus 89 al~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~-----~~~~v~~~~ 152 (353)
T PRK05387 89 VLAHAFLAFFNHDRPLLFPDITYSFYPV--------YAGLYGI--PYEEIPLD-DDFSIDVEDYLR-----PNGGIIFPN 152 (353)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCHHHHHH--------HHHHcCC--EEEEeecC-CCCCCCHHHHHh-----cCCEEEEeC
Confidence 9999999999999999999886544321 2245565 44455555 346789998864 235666655
Q ss_pred CCC--CCCCCHHHHHHHHHHc-CCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcC--ccCcEEEEEEeCCCCc
Q 018300 260 SAY--PRDFDYPRMRQIADAV-GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDPVL 332 (358)
Q Consensus 260 s~~--~~~~dl~~I~~ia~e~-g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~~ 332 (358)
++| |...+.+++.++++++ ++++++|++|. .+. .......++ .-.+++.|++|++ +|.|.|+++.++
T Consensus 153 P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~-~~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~---- 226 (353)
T PRK05387 153 PNAPTGIALPLAEIERILAANPDSVVVIDEAYV-DFG-GESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHP---- 226 (353)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCcEEEEeCccc-ccC-CcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCH----
Confidence 565 5688999999999886 99999999984 221 111111112 2358899999986 688889999876
Q ss_pred hhHHHHHHhh
Q 018300 333 GVELESAINN 342 (358)
Q Consensus 333 ~~~~~~~i~~ 342 (358)
++.+++..
T Consensus 227 --~~~~~l~~ 234 (353)
T PRK05387 227 --ELIEALNR 234 (353)
T ss_pred --HHHHHHHH
Confidence 55555544
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-12 Score=129.16 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=102.3
Q ss_pred eEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh
Q 018300 171 NVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL 249 (358)
Q Consensus 171 ~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~ 249 (358)
+|.+++|+ +|+..++.++++|||+|++.+|.|.++.. .+...|. +++++++++ + .+|++++++.++.
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~-~-g~~~~~l~~~~~~ 210 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSIN--------MLRYAGF--SASPVSVDA-E-GMQPEKLERALAQ 210 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH--------HHHHcCC--eEEeeccCC-C-CCCHHHHHHHHhc
Confidence 46666665 59999999999999999999987765532 2345565 455555653 2 4899999998764
Q ss_pred cCCeEEEEc-CCCCC--CCCCH---HHHHHHHHHc-CCEEEEeccccccccccCCccCCCC---CCcEEEEcCcCcC-cc
Q 018300 250 FRPKLIIAG-ASAYP--RDFDY---PRMRQIADAV-GALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSL-RG 318 (358)
Q Consensus 250 ~~~klIi~~-~s~~~--~~~dl---~~I~~ia~e~-g~~livD~Ah~~Gl~~~g~~~~pl~---gaDiv~~S~hK~L-~G 318 (358)
++|++++. .++|| ...+. ++|.++|+++ +++|++|.++. .+...+ .+.++. .--+++.|++|++ +|
T Consensus 211 -~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~-~~~~~~-~~~~~~~~~~~vi~~~SfSK~~~~G 287 (431)
T PRK15481 211 -GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFA-LLSSSP-YHSVIPQTTQRWALIRSVSKALGPD 287 (431)
T ss_pred -CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchh-hhccCC-CCCCCcCCCCCEEEEeeeccccCCC
Confidence 78888775 55665 45665 4899999999 99999999865 333222 122232 1237889999998 56
Q ss_pred CcEEEEEEeCC
Q 018300 319 PRGGMIFFKKD 329 (358)
Q Consensus 319 p~GG~I~~~~~ 329 (358)
.|-|+++.+++
T Consensus 288 lRiG~~i~~~~ 298 (431)
T PRK15481 288 LRLAFVASDSA 298 (431)
T ss_pred ceeEEEeCCHH
Confidence 67799998763
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.1e-12 Score=125.65 Aligned_cols=170 Identities=15% Similarity=0.146 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHcCCCC-CCCcceEEeCCCHHHHHHHHHHh--ccCCCEEEecCCCCCcccccccccchhccccCCc
Q 018300 146 IDELETLCQKRALAAFNLDE-NKWGVNVQPLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (358)
Q Consensus 146 ~~~lE~~~~~~la~lfg~~~-~~~~v~V~~~SGt~A~~~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (358)
..++|+.+-+|++++||.++ ..|| +++++||+||+.++.+. ..+...|++++. +|.+. .|++.+.|.
T Consensus 131 s~~~E~~Vi~wla~L~g~p~~~~~G--~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~---aH~Sv-----~KAa~llgi 200 (470)
T PLN02263 131 SRQFEVGVLDWFARLWEIEKNEYWG--YITNCGTEGNLHGILVGREVFPDGILYASRE---SHYSV-----FKAARMYRM 200 (470)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeE--EEeCcHHHHHHHHHHHHHhhcCCcEEEEcCC---ccHHH-----HHHHHhcCC
Confidence 45899999999999999975 3354 45678899999988765 223335666553 45442 145567777
Q ss_pred eEEEEeceecCCCCCCCHHHHHHHhhhcC--CeEEEE--cCCCCCCCCCHHHHHHHHHHcCC-----EEEEecccccccc
Q 018300 223 YFESMPYRLDESTGLVDYDMLEKTAILFR--PKLIIA--GASAYPRDFDYPRMRQIADAVGA-----LLMMDMAHISGLV 293 (358)
Q Consensus 223 ~~~~~~~~~~~~~~~iD~d~le~~i~~~~--~klIi~--~~s~~~~~~dl~~I~~ia~e~g~-----~livD~Ah~~Gl~ 293 (358)
.+..+ +++ +++.+|+++|++.+.+.+ |-+|+. +.+..|..-|+++|.++|+++|+ +++||+|.+ |..
T Consensus 201 ~~~~V--p~d-~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~G-G~~ 276 (470)
T PLN02263 201 ECVKV--DTL-VSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALF-GLM 276 (470)
T ss_pred cceEe--ccC-CCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccch-hhH
Confidence 54444 455 468999999999886543 445544 44456778899999999999997 999999965 443
Q ss_pred ccC-CccCCCC---CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 294 AAS-VVADPFK---YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 294 ~~g-~~~~pl~---gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
..- ....+++ .+|-++.++|||+..|.+ |+++++++
T Consensus 277 lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~ 317 (470)
T PLN02263 277 MPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRME 317 (470)
T ss_pred hhhcccccccCCCcCccEEEECCccccCCCcCEEEEEEehh
Confidence 210 0111233 599999999999998976 88888875
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-12 Score=126.42 Aligned_cols=200 Identities=16% Similarity=0.066 Sum_probs=129.5
Q ss_pred cccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HHH
Q 018300 106 ELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANF 182 (358)
Q Consensus 106 ~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~ 182 (358)
+|-..++ .+++.+.+++...+... .+|+.. + ..++ ++.++++++++++ +|++++|+. ++.
T Consensus 36 ~l~~~~~~~~~~~~~~~a~~~~~~~~--~~Y~~~----~---~~~L----r~~ia~~~~~~~~----~I~it~G~~~~l~ 98 (369)
T PRK08153 36 RIGANESGFGPSPSVIAAMREAAAEI--WKYGDP----E---NHDL----RHALAAHHGVAPE----NIMVGEGIDGLLG 98 (369)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHh--hcCCCC----c---cHHH----HHHHHHHhCCCHH----HEEEcCCHHHHHH
Confidence 4433343 46888999987654321 234321 1 1234 4457778888764 577788876 777
Q ss_pred HHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC
Q 018300 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262 (358)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~ 262 (358)
.++.++++|||.|++.++.|.++.. .+...|. ++++++++. ..+|++++++.+...++|+|++..++|
T Consensus 99 ~~~~~~~~~gd~vlv~~p~y~~~~~--------~~~~~g~--~~~~vp~~~--~~~~~~~l~~~~~~~~~~~i~l~~P~N 166 (369)
T PRK08153 99 LIVRLYVEPGDPVVTSLGAYPTFNY--------HVAGFGG--RLVTVPYRD--DREDLDALLDAARRENAPLVYLANPDN 166 (369)
T ss_pred HHHHHhcCCCCEEEECCCcchHHHH--------HHHHcCC--eEEEeeCCC--CCCCHHHHHHHhcccCCcEEEEeCCCC
Confidence 7788889999999999876654322 1233455 344444542 358999998776555789888865665
Q ss_pred --CCCCCHHHHHHHHHHc--CCEEEEeccccccccccCCccCCCC--C-CcEEEEcCcCcC--ccCcEEEEEEeCCCCch
Q 018300 263 --PRDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--Y-CDVVTTTTHKSL--RGPRGGMIFFKKDPVLG 333 (358)
Q Consensus 263 --~~~~dl~~I~~ia~e~--g~~livD~Ah~~Gl~~~g~~~~pl~--g-aDiv~~S~hK~L--~Gp~GG~I~~~~~~~~~ 333 (358)
|...+.+++.++++.+ |++|++|+++. .+...+..+ ++. . --+++.|++|++ +|.|.|++++++
T Consensus 167 PtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~-~~~~~~~~~-~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~----- 239 (369)
T PRK08153 167 PMGSWHPAADIVAFIEALPETTLLVLDEAYC-ETAPAGAAP-PIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAP----- 239 (369)
T ss_pred CCCCCCCHHHHHHHHHhCCCCcEEEEeCchh-hhcCcccch-hhhhcCCCEEEEecchHhccCcchheeeeecCH-----
Confidence 4577877777776654 89999999975 444333221 222 1 237789999997 578889999976
Q ss_pred hHHHHHHhh
Q 018300 334 VELESAINN 342 (358)
Q Consensus 334 ~~~~~~i~~ 342 (358)
++.+.+..
T Consensus 240 -~~~~~l~~ 247 (369)
T PRK08153 240 -GTIKAFDK 247 (369)
T ss_pred -HHHHHHHH
Confidence 45555444
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-12 Score=127.37 Aligned_cols=203 Identities=19% Similarity=0.151 Sum_probs=130.8
Q ss_pred ccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HH
Q 018300 105 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-AN 181 (358)
Q Consensus 105 i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~ 181 (358)
++|-..+| .+++.+.+++...... ...|+.. .| +. .++.+++++|++.+ +|.+++|+. ++
T Consensus 39 i~l~~~~~~~~~~~~~~~al~~~~~~--~~~Y~~~---~g----~~----lr~~ia~~~~~~~~----~i~~t~G~~~~l 101 (371)
T PRK05166 39 AKLGSNENPLGPSPAVRRAFADIAEL--LRLYPDP---QG----RA----LREAIAARTGVPAD----RIILGNGSEDLI 101 (371)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHH--hhcCCCC---cH----HH----HHHHHHHHhCcCHH----HEEEcCCHHHHH
Confidence 44443333 4688888888754322 1234321 11 12 34557788898764 566777765 88
Q ss_pred HHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC
Q 018300 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (358)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~ 261 (358)
..++.+++++||+|++.++.|..+.. .+...|.. +.++++++ ++.+|++++++.++. ++|+|++..++
T Consensus 102 ~~~~~~~~~~gd~vli~~P~y~~~~~--------~~~~~g~~--~~~v~~~~-~~~~~~~~l~~~~~~-~~~~v~l~~p~ 169 (371)
T PRK05166 102 AVICRAVLRPGDRVVTLYPSFPLHED--------YPTMMGAR--VERVTVTP-DLGFDLDALCAAVAR-APRMLMFSNPS 169 (371)
T ss_pred HHHHHHhcCCCCEEEEcCCChHHHHH--------HHHHcCCe--EEEeecCC-CCCCCHHHHHHhhhc-CCCEEEEeCCC
Confidence 88888889999999998876654321 22345654 44555553 468899999998764 68988876666
Q ss_pred CC--CCCCHHHHHHHHHH--cCCEEEEeccccccccccCCccCCC---C--C-CcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 262 YP--RDFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPF---K--Y-CDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 262 ~~--~~~dl~~I~~ia~e--~g~~livD~Ah~~Gl~~~g~~~~pl---~--g-aDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
+| ...+.+++.++++. .++++++|+++. .+...+..++.+ + + --+++.|++|.+ +|.|.|+++..++
T Consensus 170 NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~ 248 (371)
T PRK05166 170 NPVGSWLTADQLARVLDATPPETLIVVDEAYA-EYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDP 248 (371)
T ss_pred CCCCCCCCHHHHHHHHHhCCCCcEEEEECcHH-HhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCH
Confidence 54 57787777776664 378999999965 344322222222 1 1 127789999996 7889999887554
Q ss_pred CCchhHHHHHHhh
Q 018300 330 PVLGVELESAINN 342 (358)
Q Consensus 330 ~~~~~~~~~~i~~ 342 (358)
++.+.+..
T Consensus 249 -----~l~~~~~~ 256 (371)
T PRK05166 249 -----ELVGLLDR 256 (371)
T ss_pred -----HHHHHHHH
Confidence 56555544
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.6e-12 Score=126.68 Aligned_cols=195 Identities=20% Similarity=0.160 Sum_probs=126.8
Q ss_pred CCcHHHHHHHhhhhhccc--CCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceEEeCCC-HHHHHHHHHH
Q 018300 113 FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG-SPANFEVYTA 187 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~--~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~--~~~~~~v~V~~~SG-t~A~~~a~~a 187 (358)
.+++.+.+++...+.... ..+|+. ..|. ..+++.+.+++...++. +++ +|.+++| ++++..++.+
T Consensus 46 ~~~~~v~~a~~~~~~~~~~~~~~y~~---~~g~---~~lr~~ia~~l~~~~~~~~~~~----~i~~t~G~~~al~~~~~~ 115 (394)
T PRK06836 46 PPPAAVKEALRELAEEEDPGLHGYMP---NAGY---PEVREAIAESLNRRFGTPLTAD----HIVMTCGAAGALNVALKA 115 (394)
T ss_pred CCCHHHHHHHHHHHhcCCcCcccCCC---CCCC---HHHHHHHHHHHHHHhCCCCCcC----cEEEeCChHHHHHHHHHH
Confidence 357889998876654321 112211 1222 34555555555544443 443 3555555 5699999999
Q ss_pred hccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CC
Q 018300 188 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RD 265 (358)
Q Consensus 188 ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~ 265 (358)
+++|||+|+++++.+.++.. .....|. ++.+++.+++++.+|++++++.++. ++++|++..+++| ..
T Consensus 116 l~~~gd~Vli~~p~~~~~~~--------~~~~~g~--~v~~v~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~NPtG~~ 184 (394)
T PRK06836 116 ILNPGDEVIVFAPYFVEYRF--------YVDNHGG--KLVVVPTDTDTFQPDLDALEAAITP-KTKAVIINSPNNPTGVV 184 (394)
T ss_pred hcCCCCEEEEcCCCCccHHH--------HHHHcCC--EEEEEecCCccCcCCHHHHHhhcCc-CceEEEEeCCCCCCCcC
Confidence 99999999999886655422 2234465 4555556655568999999998864 7898887666664 45
Q ss_pred CC---HHHHHHHHHH------cCCEEEEeccccccccccCC-ccCCCC--CCcEEEEcCcCcCc--cCcEEEEEEeCC
Q 018300 266 FD---YPRMRQIADA------VGALLMMDMAHISGLVAASV-VADPFK--YCDVVTTTTHKSLR--GPRGGMIFFKKD 329 (358)
Q Consensus 266 ~d---l~~I~~ia~e------~g~~livD~Ah~~Gl~~~g~-~~~pl~--gaDiv~~S~hK~L~--Gp~GG~I~~~~~ 329 (358)
.+ +++|.++|++ +|+++++|+++. .+...+. .+..+. .-.+++.|++|.|+ |.|-|+++.+++
T Consensus 185 ~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~ 261 (394)
T PRK06836 185 YSEETLKALAALLEEKSKEYGRPIYLISDEPYR-EIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPE 261 (394)
T ss_pred CCHHHHHHHHHHHHHhhhccCCCeEEEEecccc-ccccCCCCCCChHHccCcEEEEecchhhccCcceeeEEEecCHH
Confidence 55 6777788998 899999999865 4443332 111122 23588899999874 667899998764
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.9e-13 Score=131.75 Aligned_cols=193 Identities=8% Similarity=-0.011 Sum_probs=119.7
Q ss_pred cccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEE-eCCCHHHHH
Q 018300 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQ-PLSGSPANF 182 (358)
Q Consensus 104 ~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~-~~SGt~A~~ 182 (358)
...++|++..+++.|++++......-. +.+ +.+.++.+.+++ +++.++++||++.+ +.+ ++ ..|||.++.
T Consensus 4 ~~~f~pGP~~~~~~v~~a~~~~~~~~~---~~~---hr~~~f~~~~~~-~r~~l~~l~~~~~~-~~v-~f~~gs~T~a~~ 74 (361)
T TIGR01366 4 DGRFGSGPSKVRLEQLQALTTTAASLF---GTS---HRQAPVKNLVGR-VREGLAELFSLPDG-YEV-ILGNGGATAFWD 74 (361)
T ss_pred CCcccCCCcCCCHHHHHHHHhcCcccc---ccC---cCChHHHHHHHH-HHHHHHHHhCCCCC-ceE-EEECCchhHHHH
Confidence 346789999999999999874210000 112 234567777776 89999999999542 212 33 356899999
Q ss_pred HHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCC--
Q 018300 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS-- 260 (358)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s-- 260 (358)
+++.+++.+ +.+++...+++..+.|.. +...+.+ .++.+++ + +...++.+ +. .++|+|.+.+.
T Consensus 75 ~~~~~l~~~-~~l~i~~G~~~~~~~~~a----~~~~~~~-~~~~~~~--~-~~~~~~~~-----~~-~~~~lV~~~h~et 139 (361)
T TIGR01366 75 AATFGLIEK-KSLHLSFGEFSSKFAKAV----KLAPWLG-EPIIVTA--D-PGSAPEPQ-----AD-PGVDVIAWAHNET 139 (361)
T ss_pred HHHHhcccc-cccEEecCHHHHHHHHHH----HhhhccC-CceEEec--C-CCCCCCCc-----cC-CCCCEEEEcccCC
Confidence 999998743 333333333333222211 1111112 2344443 2 23344432 22 36888877543
Q ss_pred CCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcE-EEEEEeC
Q 018300 261 AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKK 328 (358)
Q Consensus 261 ~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~ 328 (358)
++|...|+++| ++++|+++++|++|++|.. +..++.+|++++|.||+|++|.| ++++.++
T Consensus 140 ~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~-----~idv~~~D~~~~s~~K~lg~~~Gl~~~~~s~ 200 (361)
T TIGR01366 140 STGVAVPVRRP---EGSDDALVVIDATSGAGGL-----PVDIAETDVYYFAPQKNFASDGGLWLAIMSP 200 (361)
T ss_pred ccceecccccc---cccCCCeEEEEcCccccCC-----CCCHHHCCEEEEEchhhcCCCCceEEEEECH
Confidence 46788898887 5899999999999998864 22333689999999999988766 3334455
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-12 Score=126.45 Aligned_cols=190 Identities=17% Similarity=0.111 Sum_probs=126.5
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKP 191 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~p 191 (358)
.+++.+++++...+... ..||. ....++ ++.+++++|++++ +|.+++|+ +++..++.++++|
T Consensus 56 ~~~~~~~~a~~~~~~~~--~~Y~~-------~~~~~L----r~aia~~~~v~~e----~I~it~Gs~~ai~~~~~~l~~~ 118 (370)
T PRK09105 56 GPSPAARDAAARSAALS--GRYDL-------ELEDDL----RTLFAAQEGLPAD----HVMAYAGSSEPLNYAVLAFTSP 118 (370)
T ss_pred CCCHHHHHHHHHHHHHh--cCCCC-------chHHHH----HHHHHHHhCcChh----hEEEcCChHHHHHHHHHHHcCC
Confidence 46889999987765321 12322 112233 4457788899875 46666665 5999999999999
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHH
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYP 269 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~ 269 (358)
||+|+++++.|.++.. .+...|.. ++.++.++ ++.+|++++++. . .++++|++..++|| ...+.+
T Consensus 119 gd~Vli~~P~y~~~~~--------~~~~~g~~--~~~v~~~~-~~~~d~~~l~~~-~-~~~~~v~l~nP~NPTG~~~~~~ 185 (370)
T PRK09105 119 TAGLVTADPTYEAGWR--------AADAQGAP--VAKVPLRA-DGAHDVKAMLAA-D-PNAGLIYICNPNNPTGTVTPRA 185 (370)
T ss_pred CCEEEEeCCChHHHHH--------HHHHcCCe--EEEecCCC-CCCCCHHHHHhc-C-CCCCEEEEeCCCCCCCcCcCHH
Confidence 9999999987765522 23455654 44444553 467899999876 3 36788877666664 577878
Q ss_pred HHHHHHHH--cCCEEEEeccccccccccCCccCCCC----CCc-EEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHH
Q 018300 270 RMRQIADA--VGALLMMDMAHISGLVAASVVADPFK----YCD-VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAI 340 (358)
Q Consensus 270 ~I~~ia~e--~g~~livD~Ah~~Gl~~~g~~~~pl~----gaD-iv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i 340 (358)
++.++++. +|+++++|++|. .+.. .++..+ +.+ +++.|++|++ +|.|-|++++++ ++.+++
T Consensus 186 ~l~~l~~~~~~~~~lIvDEaY~-~f~~---~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~------~~i~~l 255 (370)
T PRK09105 186 DIEWLLANKPAGSVLLVDEAYI-HFSD---APSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARP------DLLAKL 255 (370)
T ss_pred HHHHHHHhCCCCcEEEEECchH-Hhcc---CcchHHHHhhCCCEEEEecccHhhcCCccceeeeecCH------HHHHHH
Confidence 88777654 489999999974 2221 122121 344 5667999996 677889999876 455555
Q ss_pred hh
Q 018300 341 NN 342 (358)
Q Consensus 341 ~~ 342 (358)
..
T Consensus 256 ~~ 257 (370)
T PRK09105 256 AR 257 (370)
T ss_pred Hh
Confidence 44
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.6e-12 Score=125.83 Aligned_cols=202 Identities=13% Similarity=0.079 Sum_probs=127.1
Q ss_pred CCcHHHHHHHhhhhhccc-CCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC----CCCCCCcceEEeCCCHH-HHHHHHH
Q 018300 113 FTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKRALAAFN----LDENKWGVNVQPLSGSP-ANFEVYT 186 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~-~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg----~~~~~~~v~V~~~SGt~-A~~~a~~ 186 (358)
.+|+.+++++.+.+.... ..+||. .|.. ++++...+++.+.++ ++++ +|.+++|+. |+..++.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~Y~~----~G~~---~Lr~aia~~~~~~~~~~~~v~~~----~I~it~Ga~~al~~~~~ 109 (374)
T PRK02610 41 DLPPDLKQKLAWLYQQGIESNRYPD----GGHE---ALKQAIAEYVNESAAGSSQITPA----NISVGNGSDELIRSLLI 109 (374)
T ss_pred CCCHHHHHHHHHHHhhcccccCCCC----CchH---HHHHHHHHHhCccccccCCCCHH----HEEEcCChHHHHHHHHH
Confidence 478899999987655422 123442 2322 455444333333321 4443 577788875 7777788
Q ss_pred HhccCCC-EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh---cCCeEEEEcCCCC
Q 018300 187 AILKPHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIAGASAY 262 (358)
Q Consensus 187 all~pGD-~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~---~~~klIi~~~s~~ 262 (358)
+++.+|| +|++.+|.|.++.. .+...|. +++.+++++++..+|++++++.+.. .++|+|++..++|
T Consensus 110 ~~~~~g~~~Vlv~~P~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~N 179 (374)
T PRK02610 110 ATCLGGEGSILVAEPTFSMYGI--------LAQTLGI--PVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNS 179 (374)
T ss_pred HHcCCCCCeEEEcCCChHHHHH--------HHHHcCC--EEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCC
Confidence 8888886 89999887655422 2345565 4455556654568999999988764 5789988766676
Q ss_pred C--CCCCHHHHHHHHHH-cCCEEEEeccccccccccCCccCCCCCC--cEEEEcCcCcC--ccCcEEEEEEeCCCCchhH
Q 018300 263 P--RDFDYPRMRQIADA-VGALLMMDMAHISGLVAASVVADPFKYC--DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVE 335 (358)
Q Consensus 263 ~--~~~dl~~I~~ia~e-~g~~livD~Ah~~Gl~~~g~~~~pl~ga--Div~~S~hK~L--~Gp~GG~I~~~~~~~~~~~ 335 (358)
| ...+.+++.++++- +|++||+|+++. .+.... ....+... -+++.|++|++ +|.|.|++++++ +
T Consensus 180 PTG~~~s~~~l~~l~~~~~~~~iI~De~Y~-~~~~~~-~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~------~ 251 (374)
T PRK02610 180 PTGNPLTAAELEWLRSLPEDILVVIDEAYF-EFSQTT-LVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHP------E 251 (374)
T ss_pred CCCCCCCHHHHHHHHhccCCcEEEEecccc-ccCccc-hHHHHhcCCCEEEEEecchhccCcccceeeeecCH------H
Confidence 5 46666665555431 489999999975 332111 11112211 27789999997 788999999876 4
Q ss_pred HHHHHhhc
Q 018300 336 LESAINNA 343 (358)
Q Consensus 336 ~~~~i~~~ 343 (358)
+.+++...
T Consensus 252 l~~~l~~~ 259 (374)
T PRK02610 252 LIAVLEKV 259 (374)
T ss_pred HHHHHHHh
Confidence 55555443
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-12 Score=130.38 Aligned_cols=167 Identities=19% Similarity=0.198 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEE
Q 018300 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 226 (358)
Q Consensus 148 ~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~ 226 (358)
.+.+.+.+++....|..-. . -+|+.++|++ |+..+...+++|||+|++-+|.|.+... .....|. ++
T Consensus 136 ~LR~~ia~~l~~~~g~~~~-~-~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~--------~~~~~g~--~~ 203 (459)
T COG1167 136 ELREAIAAYLLARRGISCE-P-EQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQ--------ALEALGA--RV 203 (459)
T ss_pred HHHHHHHHHHHHhcCCccC-c-CeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHH--------HHHHcCC--cE
Confidence 5666666666655566532 2 2677888886 9999999999999999998876544322 3345565 55
Q ss_pred EeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-CC--CCCCH---HHHHHHHHHcCCEEEEeccccccccccCCccC
Q 018300 227 MPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YP--RDFDY---PRMRQIADAVGALLMMDMAHISGLVAASVVAD 300 (358)
Q Consensus 227 ~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-~~--~~~dl---~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~ 300 (358)
+++++| ..-+|+|+|++.+...++|++++.++. || ...+. ++|.++|++||+++|.|..+. -+.+.+..+.
T Consensus 204 ~~vp~d--~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~-el~~~~~p~~ 280 (459)
T COG1167 204 IPVPVD--EDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYG-ELRYDGPPPP 280 (459)
T ss_pred EecCCC--CCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcch-hhhcCCCCCC
Confidence 666666 357899999999887789999886543 54 45554 579999999999999999754 4444433333
Q ss_pred CCCC-----CcEEEEcCcCcC-ccCcEEEEEEeCC
Q 018300 301 PFKY-----CDVVTTTTHKSL-RGPRGGMIFFKKD 329 (358)
Q Consensus 301 pl~g-----aDiv~~S~hK~L-~Gp~GG~I~~~~~ 329 (358)
++.. ==+++.|++|+| +|.|.|+|+..++
T Consensus 281 ~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~ 315 (459)
T COG1167 281 PLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPE 315 (459)
T ss_pred ChHhhCCCCCEEEEeeehhhcccccceeeeeCCHH
Confidence 3331 127899999997 7889999999885
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-12 Score=127.22 Aligned_cols=203 Identities=18% Similarity=0.149 Sum_probs=132.0
Q ss_pred hcccccccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-H
Q 018300 103 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P 179 (358)
Q Consensus 103 ~~i~lias~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~ 179 (358)
..+.|-..+|. +++.+++++...+.+.. .||. .|. .+ .++.+++++|++++ +|.+++|+ +
T Consensus 30 ~~i~l~~nen~~~~~~~v~~a~~~~~~~~~--~Yp~----~g~---~~----Lr~aia~~~~~~~~----~I~vt~Gs~e 92 (366)
T PRK01533 30 SFVKLASNENPFGCSPRVLDELQKSWLDHA--LYPD----GGA---TT----LRQTIANKLHVKME----QVLCGSGLDE 92 (366)
T ss_pred ceEEeCCCCCCCCCCHHHHHHHHHHHHhcC--cCCC----CCH---HH----HHHHHHHHhCCCcc----eEEECCCHHH
Confidence 34555555554 68889999887654321 2332 122 12 34557788899875 56677776 5
Q ss_pred HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC
Q 018300 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (358)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~ 259 (358)
++..++.++++|||+|++.+|.|.++.. .....|.. +.+++++ ++.+|++++++.++. ++|+|++..
T Consensus 93 ~i~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~g~~--v~~v~~~--~~~~d~~~l~~~~~~-~~~~v~i~~ 159 (366)
T PRK01533 93 VIQIISRAVLKAGDNIVTAGATFPQYRH--------HAIIEGCE--VKEVALN--NGVYDLDEISSVVDN-DTKIVWICN 159 (366)
T ss_pred HHHHHHHHhcCCCCEEEEcCCcHHHHHH--------HHHHcCCE--EEEeecC--CCCcCHHHHHHHhCc-CCcEEEEeC
Confidence 8899999999999999999886655422 23455654 4444454 346999999988754 688888766
Q ss_pred CCCC--CCCCHHHHHHHH---HHcCCEEEEeccccccccccCCccCCC---C--CCcEEEEcCcCcC--ccCcEEEEEEe
Q 018300 260 SAYP--RDFDYPRMRQIA---DAVGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSL--RGPRGGMIFFK 327 (358)
Q Consensus 260 s~~~--~~~dl~~I~~ia---~e~g~~livD~Ah~~Gl~~~g~~~~pl---~--gaDiv~~S~hK~L--~Gp~GG~I~~~ 327 (358)
++|| ...+.+++.+++ ++++ ++++|+++. .+...+..+..+ + .--+++.|++|++ +|.|.|+++++
T Consensus 160 P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~-~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~ 237 (366)
T PRK01533 160 PNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYY-EYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGH 237 (366)
T ss_pred CCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHH-HhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCC
Confidence 6665 567766655555 4445 677899976 544332212212 2 1237889999986 67888999987
Q ss_pred CCCCchhHHHHHHhhc
Q 018300 328 KDPVLGVELESAINNA 343 (358)
Q Consensus 328 ~~~~~~~~~~~~i~~~ 343 (358)
+ ++.+++...
T Consensus 238 ~------~~~~~l~~~ 247 (366)
T PRK01533 238 E------ELIEKLNVV 247 (366)
T ss_pred H------HHHHHHHHh
Confidence 5 566666543
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-12 Score=123.88 Aligned_cols=204 Identities=16% Similarity=0.136 Sum_probs=129.2
Q ss_pred cccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HH
Q 018300 104 SLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA 180 (358)
Q Consensus 104 ~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A 180 (358)
-++|-..+| .+++.+.+++.+.+.. ..+||. .|. .++ ++.++++++++++ +|.+++|+ +|
T Consensus 32 ~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~----~~~---~~l----r~~ia~~~~~~~~----~I~it~G~~~a 94 (357)
T PRK14809 32 LVKLSSNENPHGPSPAAVEAIREAAER--VHSYPK----ASH---ADL----TAALADRWDVSPE----QVWLANGGDGA 94 (357)
T ss_pred eeEecCCCCCCCCCHHHHHHHHHHHhh--hhcCCC----CCH---HHH----HHHHHHHhCCCcc----eEEECCCHHHH
Confidence 355544444 4688888988776542 234543 121 233 4456778888875 56677776 58
Q ss_pred HHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhhcCCeEEEEcC
Q 018300 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGA 259 (358)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~~~~klIi~~~ 259 (358)
+..++.++++|||+|++.+|.|..+.. .....|..+..++ ++.+ +..+|.+++++.. .++|+|++..
T Consensus 95 l~~~~~~~~~~gd~V~v~~P~y~~~~~--------~~~~~g~~~~~~~--l~~~~~~~~~~~~~~~~~--~~~k~i~l~~ 162 (357)
T PRK14809 95 LDYLARAMLDPGDTVLVPDPGFAYYGM--------SARYHHGEVREYP--VSKADDFEQTADTVLDAY--DGERIVYLTS 162 (357)
T ss_pred HHHHHHHhcCCCCEEEEeCCChHHHHH--------HHHHcCCeEEEEe--cccCcCCCcCHHHHHHhh--cCCcEEEEeC
Confidence 999999999999999999886543211 2234565444444 4332 3467888877654 2578888876
Q ss_pred CCCC--CCCCHHHHHHHHHHc--CCEEEEeccccccccccCCccCCCCCC-c-EEEEcCcCcC--ccCcEEEEEEeCCCC
Q 018300 260 SAYP--RDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFKYC-D-VVTTTTHKSL--RGPRGGMIFFKKDPV 331 (358)
Q Consensus 260 s~~~--~~~dl~~I~~ia~e~--g~~livD~Ah~~Gl~~~g~~~~pl~ga-D-iv~~S~hK~L--~Gp~GG~I~~~~~~~ 331 (358)
++|| ...+.+++.++++.+ +++|++|+++. .+...+....-++.. . +++.|++|++ +|.|-|++++++
T Consensus 163 p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~-~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~--- 238 (357)
T PRK14809 163 PHNPTGSEIPLDEVEALAERTDEETLVVVDEAYG-EFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPE--- 238 (357)
T ss_pred CCCCCCcCCCHHHHHHHHHhCccCcEEEEechhh-hccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCH---
Confidence 7765 577877777776654 78999999976 333221100011112 2 6678999997 578889999987
Q ss_pred chhHHHHHHhhc
Q 018300 332 LGVELESAINNA 343 (358)
Q Consensus 332 ~~~~~~~~i~~~ 343 (358)
++.+++...
T Consensus 239 ---~~~~~~~~~ 247 (357)
T PRK14809 239 ---EWADAYARV 247 (357)
T ss_pred ---HHHHHHHHh
Confidence 455555543
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=122.50 Aligned_cols=189 Identities=15% Similarity=0.114 Sum_probs=120.4
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceEEeCCCHH-HHHHHHHHhc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGSP-ANFEVYTAIL 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~--~~~~~~v~V~~~SGt~-A~~~a~~all 189 (358)
.+++.+.+++..... ....|+. ..|.. ++.+..++++++.+|. +++ +|++++|+. |+..++.+++
T Consensus 37 ~~~~~~~~a~~~~~~--~~~~Y~~---~~G~~---~lr~aia~~l~~~~g~~~~~~----~I~it~G~~~al~~~~~~~~ 104 (374)
T PRK05839 37 ETPKFIQDALKNNAH--LLNKYPK---SAGEE---SLREAQRGFFKRRFKIELKEN----ELIPTFGTREVLFNFPQFVL 104 (374)
T ss_pred CCCHHHHHHHHHHhh--ccCCCCC---CCCCH---HHHHHHHHHHHHHhCCCCCcc----eEEEecCcHHHHHHHHHHHh
Confidence 457888888775432 1223443 12332 4666667777787774 443 677888876 7777777764
Q ss_pred --cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC-CCCCHHHHHHHhhhcCCeEEEEcCCCCCC--
Q 018300 190 --KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIAGASAYPR-- 264 (358)
Q Consensus 190 --~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~iD~d~le~~i~~~~~klIi~~~s~~~~-- 264 (358)
++||.|++++|.|..+.. .+...|. +++++++++++ ..+|.++.+ + .++|+|++..++||+
T Consensus 105 ~~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~v~~v~~~~~~~~~~d~~~~~--~--~~~k~v~i~nP~NPTG~ 170 (374)
T PRK05839 105 FDKQNPTIAYPNPFYQIYEG--------AAIASRA--KVLLMPLTKENDFTPSLNEKE--L--QEVDLVILNSPNNPTGR 170 (374)
T ss_pred cCCCCCEEEECCCCchhhHH--------HHHhcCC--EEEEeecccccCCcCCcchhh--h--ccccEEEEeCCCCCcCc
Confidence 589999999886655422 2234565 55566665433 356655432 2 268988887677654
Q ss_pred CCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--------CCc--EEEEcCcCc--CccCcEEEEEEeC
Q 018300 265 DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--------YCD--VVTTTTHKS--LRGPRGGMIFFKK 328 (358)
Q Consensus 265 ~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--------gaD--iv~~S~hK~--L~Gp~GG~I~~~~ 328 (358)
..+ +++|+++|+++|++|++|+++. .+...+..++.+. ..+ +++.|++|. ++|.|.|++++++
T Consensus 171 ~~s~~~l~~i~~~~~~~~~~ii~DE~Y~-~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~ 248 (374)
T PRK05839 171 TLSLEELIEWVKLALKHDFILINDECYS-EIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDA 248 (374)
T ss_pred ccCHHHHHHHHHHHHHcCCEEEeccchh-hcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCH
Confidence 444 6778888999999999999965 3432222222111 112 778999997 4788999999876
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-12 Score=124.59 Aligned_cols=201 Identities=15% Similarity=0.148 Sum_probs=124.2
Q ss_pred ccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HH
Q 018300 105 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-AN 181 (358)
Q Consensus 105 i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~ 181 (358)
++|-..+| .+|+.+++++.+.+... ..||.. + ..+ .|+.++++++++++ +|.+++|+. ++
T Consensus 23 i~l~~~~~~~~~p~~~~~a~~~~~~~~--~~y~~~----~---~~~----lr~~ia~~~~~~~~----~i~it~Ga~~~l 85 (356)
T PRK08056 23 LDFSANINPLGMPVSLKRAIIDNLDCA--ERYPDV----E---YRH----LHQALARHHQVPAS----WILAGNGETESI 85 (356)
T ss_pred EEeccccCCCCCCHHHHHHHHHHHHhc--ccCcCc----c---HHH----HHHHHHHHhCcChh----hEEECCCHHHHH
Confidence 55544455 47889999997765421 234321 1 122 45567888999874 466777765 88
Q ss_pred HHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCC-CCCHHHHHHHhhhcCCeEEEEcCC
Q 018300 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG-LVDYDMLEKTAILFRPKLIIAGAS 260 (358)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~iD~d~le~~i~~~~~klIi~~~s 260 (358)
..++.++ .+||. ++.++.+..+. ..+...|. ++++++++++++ .+| +++++.+. .++|+|++..+
T Consensus 86 ~~~~~~l-~~g~v-iv~~P~y~~~~--------~~~~~~g~--~~~~v~~~~~~~~~~~-~~~~~~~~-~~~k~v~l~~p 151 (356)
T PRK08056 86 FAVVSGL-KPRRA-MIVTPGFAEYR--------RALQQVGC--EIRRYSLREADGWQLT-DAILEALT-PDLDCLFLCTP 151 (356)
T ss_pred HHHHHHh-CCCCE-EEeCCCcHHHH--------HHHHHcCC--eEEEEecccccCCCcc-HHHHHhcc-CCCCEEEEeCC
Confidence 8777775 78874 55555433221 12345565 445555554333 556 34445454 47898888766
Q ss_pred CCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCC-ccCCCC--CCcEEEEcCcCcC--ccCcEEEEEEeCCC
Q 018300 261 AYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDP 330 (358)
Q Consensus 261 ~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~~pl~--gaDiv~~S~hK~L--~Gp~GG~I~~~~~~ 330 (358)
++| ...+ +++|+++|+++|+++++|+++. ++...+. ....+. ...+++.|++|++ +|.|.|+++..++
T Consensus 152 ~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~- 229 (356)
T PRK08056 152 NNPTGLLPERQLLQAIAERCKSLNIALILDEAFI-DFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDD- 229 (356)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchh-ccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCCH-
Confidence 665 4666 7888999999999999999964 4432221 111222 3458899999986 5678899998543
Q ss_pred CchhHHHHHHhh
Q 018300 331 VLGVELESAINN 342 (358)
Q Consensus 331 ~~~~~~~~~i~~ 342 (358)
++.+++..
T Consensus 230 ----~~~~~l~~ 237 (356)
T PRK08056 230 ----AAVARMRR 237 (356)
T ss_pred ----HHHHHHHH
Confidence 44445543
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-12 Score=127.46 Aligned_cols=225 Identities=16% Similarity=0.163 Sum_probs=131.7
Q ss_pred ccccChHHHHHHHHHHHH--hhhccccccc----CC-CCc--HHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHH
Q 018300 83 LGEADPEVCEIITKEKER--QFKSLELIAS----EN-FTS--RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 153 (358)
Q Consensus 83 l~~~d~~~~~~i~~e~~~--~~~~i~lias----~n-~~s--~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~ 153 (358)
+...+++.+..+..+..+ ....++|--+ +. .++ +.+.+++...+......+|+. ..|.+ ++.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~---~~G~~---~lR~ai 78 (396)
T PRK09257 5 LEAAPADPILGLMEAFRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLP---IEGLA---AYRQAV 78 (396)
T ss_pred CCCCCCChHHHHHHHHhhCCCcCcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCC---CCCCH---HHHHHH
Confidence 444555444334443333 2244555432 22 233 678888776554322223433 23443 455555
Q ss_pred HHHHHHHcCC--CCCCCcceEEeCCCH-HHHHHHHHHh--ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEe
Q 018300 154 QKRALAAFNL--DENKWGVNVQPLSGS-PANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP 228 (358)
Q Consensus 154 ~~~la~lfg~--~~~~~~v~V~~~SGt-~A~~~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~ 228 (358)
.+++.+..+. ++++ +.|+.++|+ +|+..++.++ ++|||+|++.+|.|.++.. .+...|.. +++
T Consensus 79 a~~~~~~~~~~~~~~~--i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~--------~~~~~g~~--~v~ 146 (396)
T PRK09257 79 QELLFGADSPALAAGR--VATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRA--------IFEAAGLE--VKT 146 (396)
T ss_pred HHHhcCCCCcccccCe--EEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHH--------HHHHcCCc--EEE
Confidence 5555443332 3321 123566665 5888887655 5899999999987766532 23455654 445
Q ss_pred cee-cCCCCCCCHHHHHHHhhhcCC--eEEEEcCCCCCC--CCC---HHHHHHHHHHcCCEEEEecccccccccc-CC-c
Q 018300 229 YRL-DESTGLVDYDMLEKTAILFRP--KLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAA-SV-V 298 (358)
Q Consensus 229 ~~~-~~~~~~iD~d~le~~i~~~~~--klIi~~~s~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~-~ 298 (358)
+++ +++++.+|++++++.++..++ +++++..++||+ ..+ +++|+++|+++|+++++|.++. ++... +. .
T Consensus 147 v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~-~l~~~~~~~~ 225 (396)
T PRK09257 147 YPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQ-GFGDGLEEDA 225 (396)
T ss_pred EeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccc-ccccchHHHH
Confidence 544 334468999999988764333 455556666664 333 7788999999999999999864 44432 11 1
Q ss_pred cC--CCC-CC--cEEEEcCcCcC--ccCcEEEEEE
Q 018300 299 AD--PFK-YC--DVVTTTTHKSL--RGPRGGMIFF 326 (358)
Q Consensus 299 ~~--pl~-ga--Div~~S~hK~L--~Gp~GG~I~~ 326 (358)
+. .+. .. -+++.|++|++ +|.|-|+++.
T Consensus 226 ~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~ 260 (396)
T PRK09257 226 YGLRAFAAAGLELLVASSFSKNFGLYGERVGALSV 260 (396)
T ss_pred HHHHHHHhcCCcEEEEEEcCCcCccccccceeEEE
Confidence 11 111 11 27789999997 4888899874
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=124.86 Aligned_cols=207 Identities=19% Similarity=0.211 Sum_probs=146.2
Q ss_pred hcccccccCCCC----cHHHHHHHhhhhhcccCCCCCCCcCCCCcH-HHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCC
Q 018300 103 KSLELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGNE-YIDELETLCQKRALAAFNLDENKWGVNVQPLSG 177 (358)
Q Consensus 103 ~~i~lias~n~~----s~~V~~al~~~l~~~~~~G~pg~r~~~G~~-~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SG 177 (358)
+.+.++.|+.|. +|.|++|+...+. +|..|-.|.|...|+. ...++|++ ++++.+-+.+ ++++|.
T Consensus 171 k~VtVWCSNDYLgms~Hp~V~~A~~~tl~-~hG~GAGGTRNIsG~s~~hv~LE~e----LA~LHqK~aA-----LlFsSC 240 (570)
T KOG1360|consen 171 KKVTVWCSNDYLGMSRHPEVLDAMHDTLD-RHGAGAGGTRNISGHSKHHVRLEAE----LADLHQKEAA-----LLFSSC 240 (570)
T ss_pred CceEEEecCccccccCChHHHHHHHHHHH-HcCCCcCCccccCCCCchhhhHHHH----HHHHhcCcce-----eeeeee
Confidence 556677888875 8999999988764 5556777888777764 44456654 7888877763 667899
Q ss_pred HHHHHHHHHHh--ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc---CC
Q 018300 178 SPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RP 252 (358)
Q Consensus 178 t~A~~~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~---~~ 252 (358)
..||...+..| .-||-+|......|.+. . ..+.-++. .-.-+ ..-|+++|++++... .|
T Consensus 241 fVANDstLftLak~lpgcei~SD~gNHASM------I--~GIrns~v--~K~IF------rHND~~hL~~lL~~~~~svP 304 (570)
T KOG1360|consen 241 FVANDSTLFTLAKKLPGCEIFSDEGNHASM------I--QGIRNSRV--PKHIF------RHNDLDHLEQLLQSSPKSVP 304 (570)
T ss_pred eeccchHHHHHHHHCCCcEEeccccchHHH------H--HHhhhcCC--cceee------ccCCHHHHHHHHHhCCCCCC
Confidence 99999999887 45898888765433221 1 12222222 11222 245889999888653 47
Q ss_pred eEEEEc--CCCCCCCCCHHHHHHHHHHcCCEEEEecccccccccc---CC--ccCCCCCCcEEEEcCcCcCccCcEEEEE
Q 018300 253 KLIIAG--ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA---SV--VADPFKYCDVVTTTTHKSLRGPRGGMIF 325 (358)
Q Consensus 253 klIi~~--~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~---g~--~~~pl~gaDiv~~S~hK~L~Gp~GG~I~ 325 (358)
|+|.++ +|..|.++|+++|+++|+|||++.++|+.|++|+.+. |. .+..+...|++++++-|+|+ --||+|.
T Consensus 305 KivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafG-cVGGYIA 383 (570)
T KOG1360|consen 305 KIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFG-CVGGYIA 383 (570)
T ss_pred ceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhcc-cccceeh
Confidence 888875 3456789999999999999999999999999998753 22 22223368999999999874 4688888
Q ss_pred EeCCCCchhHHHHHHhh
Q 018300 326 FKKDPVLGVELESAINN 342 (358)
Q Consensus 326 ~~~~~~~~~~~~~~i~~ 342 (358)
... ++.+-+++
T Consensus 384 at~------~LvDmiRS 394 (570)
T KOG1360|consen 384 ATR------KLVDMIRS 394 (570)
T ss_pred hhh------hHHHHHHH
Confidence 877 45555554
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-11 Score=121.61 Aligned_cols=192 Identities=16% Similarity=0.096 Sum_probs=118.0
Q ss_pred hccccccc--CCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceEEeCCCH-
Q 018300 103 KSLELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGS- 178 (358)
Q Consensus 103 ~~i~lias--~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~-~~~~~v~V~~~SGt- 178 (358)
.-++|-.+ ..++++.+.+++.+... ..+|+. ..|.. ++++.+++++.+.+|.+ .+ . -+|.+++|+
T Consensus 22 ~~i~l~~~~p~~~~~~~~~~~~~~~~~---~~~Y~~---~~G~~---~lr~~ia~~~~~~~~~~~~~-~-~~I~it~G~~ 90 (357)
T TIGR03539 22 GIVDLSVGTPVDPVPPLIRAALAAAAD---APGYPQ---TWGTP---ELREAIVDWLERRRGVPGLD-P-TAVLPVIGTK 90 (357)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHh---hCCCCc---ccCCH---HHHHHHHHHHHHhcCCCCCC-c-CeEEEccChH
Confidence 33455433 33557888888765432 123443 12332 46666667777766644 21 1 256677775
Q ss_pred HHHHHHHHHh-ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEE
Q 018300 179 PANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA 257 (358)
Q Consensus 179 ~A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~ 257 (358)
+|+..++..+ ++|||.|++.++.|.++.. .+...|. +++.++ |++++ ...++++|++
T Consensus 91 ~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~--------~~~~l----~~~~~~~v~~ 148 (357)
T TIGR03539 91 ELVAWLPTLLGLGPGDTVVIPELAYPTYEV--------GALLAGA--TPVAAD--------DPTEL----DPVGPDLIWL 148 (357)
T ss_pred HHHHHHHHHHcCCCCCEEEECCCCcHHHHH--------HHHhcCC--EEeccC--------Chhhc----CccCccEEEE
Confidence 5888887777 7999999999986655421 2234554 334431 22332 2246888888
Q ss_pred cCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--------CCcEEEEcCcCcC--ccCcEE
Q 018300 258 GASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--------YCDVVTTTTHKSL--RGPRGG 322 (358)
Q Consensus 258 ~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--------gaDiv~~S~hK~L--~Gp~GG 322 (358)
..+++| ...+ +++|.++|+++|+++++|++|. .+...+.....++ .--+++.|++|.+ +|.|+|
T Consensus 149 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G 227 (357)
T TIGR03539 149 NSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYL-ELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAG 227 (357)
T ss_pred eCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchh-hhccCCCCccceecccCCCccccEEEEeccccccCCCceeEE
Confidence 666665 4454 6678899999999999999975 3333221111111 1137888999984 788999
Q ss_pred EEEEeC
Q 018300 323 MIFFKK 328 (358)
Q Consensus 323 ~I~~~~ 328 (358)
++++++
T Consensus 228 ~~i~~~ 233 (357)
T TIGR03539 228 FVAGDP 233 (357)
T ss_pred EEecCH
Confidence 999776
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.41 E-value=9e-12 Score=123.32 Aligned_cols=177 Identities=20% Similarity=0.169 Sum_probs=116.0
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCC----cceEEeCCCHHHHHHHHHHhc--------cCC-----C-EEEecCCCCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKW----GVNVQPLSGSPANFEVYTAIL--------KPH-----D-RIMGLDLPHG 203 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~----~v~V~~~SGt~A~~~a~~all--------~pG-----D-~Vl~~~~~~g 203 (358)
..+...++|..+.++++++||.+.... +.-+++++||.+|+.++.+.- ..| + .|++++.
T Consensus 73 ~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~--- 149 (373)
T PF00282_consen 73 ASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQ--- 149 (373)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETT---
T ss_pred cccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccc---
Confidence 345677899999999999999983211 135667788889988875531 112 3 3444442
Q ss_pred cccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc--C---CeEEEE--cCCCCCCCCCHHHHHHHHH
Q 018300 204 GHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--R---PKLIIA--GASAYPRDFDYPRMRQIAD 276 (358)
Q Consensus 204 gh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~--~---~klIi~--~~s~~~~~~dl~~I~~ia~ 276 (358)
+|++. .+.+...|..++ .+++++ ++.+|+++|++.+.+. + |-+|+. +.+..|..-|+++|.++|+
T Consensus 150 aH~S~-----~Kaa~~lGlg~~--~I~~~~-~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~ 221 (373)
T PF00282_consen 150 AHYSI-----EKAARILGLGVR--KIPTDE-DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICE 221 (373)
T ss_dssp S-THH-----HHHHHHTTSEEE--EE-BBT-TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHH
T ss_pred cccHH-----HHhcceeeeEEE--EecCCc-chhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhcc
Confidence 45442 245667787644 444664 6799999999987542 2 223333 4455677889999999999
Q ss_pred HcCCEEEEeccccccccccCCcc---CCCCCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 277 AVGALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 277 e~g~~livD~Ah~~Gl~~~g~~~---~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
++++++++|+|+........... .-++.+|-++.++||++..|-+ |+++++++
T Consensus 222 ~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~ 278 (373)
T PF00282_consen 222 KYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDK 278 (373)
T ss_dssp HCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSG
T ss_pred ccceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecc
Confidence 99999999999763222222211 1223799999999999988876 88888876
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-11 Score=114.32 Aligned_cols=201 Identities=16% Similarity=0.205 Sum_probs=131.8
Q ss_pred ccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCC-C------cHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCC
Q 018300 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG-G------NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG 177 (358)
Q Consensus 105 i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~-G------~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SG 177 (358)
++-|.--..++++.++|+.+ |.+||.-..|-. | .+-+..+-+ .+++++|.|. +.++.|
T Consensus 20 v~PiQrGGiLt~eArkal~E-----~gDGYSvCD~C~~Grldei~kPpI~~F~~----dlaeFlg~D~------~R~t~G 84 (382)
T COG1103 20 VNPIQRGGILTEEARKALLE-----WGDGYSVCDFCLEGRLDEITKPPIKDFLE----DLAEFLGMDE------VRVTAG 84 (382)
T ss_pred cChhhccCcCCHHHHHHHHH-----hcCCcchhhhhccCccccccCCcHHHHHH----HHHHHhCCce------eeeccc
Confidence 34444455679999999864 344554333321 1 122333322 2789999986 566777
Q ss_pred H-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh---c---
Q 018300 178 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---F--- 250 (358)
Q Consensus 178 t-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~---~--- 250 (358)
. .|-++++.++.++||.|++..+ +|++.. -+++..|..+..+|- ..-.+..|+++...+.+++ .
T Consensus 85 ARe~KfavMhal~~~gd~vV~D~~---aHYtty-----vAAEragl~v~eVp~-tg~Pey~i~~e~y~~viee~~~~~g~ 155 (382)
T COG1103 85 AREAKFAVMHALCKEGDWVVVDSL---AHYTTY-----VAAERAGLNVAEVPN-TGYPEYKITPEGYAEVIEEVKDEGGD 155 (382)
T ss_pred chhhHHHHHHHhccCCCEEEEcCc---chHHHH-----HHHHhcCCeEEecCC-CCCCceEecHHHHHHHHHHHHhccCC
Confidence 6 5999999999999999998765 555421 134566765444431 1111235666665555432 1
Q ss_pred CCeEEEEcC--CCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc-CCCC-CCcEEEEcCcCcCcc-CcEEEEE
Q 018300 251 RPKLIIAGA--SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPFK-YCDVVTTTTHKSLRG-PRGGMIF 325 (358)
Q Consensus 251 ~~klIi~~~--s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~-~pl~-gaDiv~~S~hK~L~G-p~GG~I~ 325 (358)
.|.+.++.+ .+||...|.++++++|+++|++++..+|++.|.. | +..+ ++|+++.|.||+++. .+-|++.
T Consensus 156 ~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grm-----pvs~ke~g~DFiVgSGHKsmAAs~PiGvl~ 230 (382)
T COG1103 156 PPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRM-----PVSGKEIGADFIVGSGHKSMAASAPIGVLA 230 (382)
T ss_pred CceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccc-----cccccccCCCEEEecCccchhccCCeeEEe
Confidence 256666554 3689999999999999999999999999988854 3 2233 999999999999843 2346666
Q ss_pred EeCCCCchhHHHHHH
Q 018300 326 FKKDPVLGVELESAI 340 (358)
Q Consensus 326 ~~~~~~~~~~~~~~i 340 (358)
.+. ++++.+
T Consensus 231 ~~e------E~ae~V 239 (382)
T COG1103 231 MSE------EWAEIV 239 (382)
T ss_pred ehh------HHHHHH
Confidence 655 566654
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-11 Score=122.97 Aligned_cols=199 Identities=13% Similarity=0.093 Sum_probs=121.4
Q ss_pred cccccccCC--CCcHHHHHHHhhhhhcc----cCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceEEeC
Q 018300 104 SLELIASEN--FTSRAVMEAVGSCLTNK----YSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPL 175 (358)
Q Consensus 104 ~i~lias~n--~~s~~V~~al~~~l~~~----~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg--~~~~~~~v~V~~~ 175 (358)
-++|-..++ .+++.+.+++...+... ...+|+. ..|.+ ++++.+.+++.+..| ++++ +|.++
T Consensus 36 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~LR~aia~~~~~~~g~~~~~~----~I~it 105 (409)
T PRK07590 36 IIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGP---EQGYD---FLREKIAENDYQARGCDISAD----EIFIS 105 (409)
T ss_pred eEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCC---CCCCH---HHHHHHHHHHHHhcCCcCChh----hEEEC
Confidence 345543333 35788888888766532 1123321 12333 455555555555544 4553 57778
Q ss_pred CCHH-HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCce---------EEEEeceecCCCC-CCCHHHHH
Q 018300 176 SGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY---------FESMPYRLDESTG-LVDYDMLE 244 (358)
Q Consensus 176 SGt~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~-~iD~d~le 244 (358)
+|+. |+..+ ..+++|||+|++.+|.|.++.. .+...|.. .++++++++++++ .+|.+
T Consensus 106 ~Ga~~al~~l-~~~~~~gd~V~v~~P~Y~~~~~--------~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~--- 173 (409)
T PRK07590 106 DGAKCDTGNI-LDIFGPDNTIAVTDPVYPVYVD--------TNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELP--- 173 (409)
T ss_pred CCHHHHHHHH-HHhcCCCCEEEEeCCCCcchHH--------HHHHcCCcccccccccccceeEeecccccCCcccCc---
Confidence 8876 66654 5667999999999987766532 12233432 1255566654332 34432
Q ss_pred HHhhhcCCeEEEEcCCCCCC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCC---CCC-c--EEEEcCc
Q 018300 245 KTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYC-D--VVTTTTH 313 (358)
Q Consensus 245 ~~i~~~~~klIi~~~s~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~ga-D--iv~~S~h 313 (358)
..++|+|++..++||+ ..+ +++|.++|+++|++|++|++|. .+...+..+.++ ++. + +++.|++
T Consensus 174 ----~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~-~~~~~~~~~~~~~~~~~~~~~vi~~~SfS 248 (409)
T PRK07590 174 ----EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYE-AFISDPSLPHSIYEIEGARECAIEFRSFS 248 (409)
T ss_pred ----ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccch-hhccCCCCCcchhhCCCcccceEEEecCc
Confidence 2478988876666653 444 6678888999999999999976 444333222222 222 2 6688999
Q ss_pred CcC--ccCcEEEEEEeCC
Q 018300 314 KSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 314 K~L--~Gp~GG~I~~~~~ 329 (358)
|++ +|.|-|++++.++
T Consensus 249 K~~~~pGlRiG~~i~~~~ 266 (409)
T PRK07590 249 KTAGFTGTRCAYTVVPKE 266 (409)
T ss_pred cccCCcCceeEEEEcCHH
Confidence 987 6888999999774
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.1e-12 Score=136.64 Aligned_cols=210 Identities=10% Similarity=0.029 Sum_probs=134.3
Q ss_pred ccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HH
Q 018300 105 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-AN 181 (358)
Q Consensus 105 i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~ 181 (358)
+.|-..++ .+|+.|++++...+.. +. + +.|.. ++.+.+++++++.+|.+.+ +.-+|.+++|+. ++
T Consensus 700 I~LsinE~d~ppPp~V~eAi~eal~~-~~--~-----s~g~p---dlr~aLa~~la~~~Gv~~d-~~e~IIvt~Gs~elL 767 (1082)
T PLN02672 700 IHMDVDESFLPVPSAVKASIFESFVR-QN--I-----SESET---DPRPSILQFIKSNYGFPTD-SCTEFVYGDTSLALF 767 (1082)
T ss_pred EEEeCCCCCCCCCHHHHHHHHHHHhh-cC--C-----CCCCh---HHHHHHHHHHHHHhCcCCC-CCCEEEEeCCHHHHH
Confidence 45544444 4689999999876532 11 1 11111 2345567888998998753 112466778876 66
Q ss_pred HHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhhcCCeEEEEcCC
Q 018300 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGAS 260 (358)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~~~~klIi~~~s 260 (358)
..++.++++|||+|++++|.|..+.. .+...|. ++++++++++ +..+|++++++.++..+.++|++..+
T Consensus 768 ~lll~aLl~pGD~VLVp~PtY~~Y~~--------~a~~~Ga--~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nP 837 (1082)
T PLN02672 768 NKLVLCCVQEGGTLCFPAGSNGTYVS--------AAKFLKA--NFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGP 837 (1082)
T ss_pred HHHHHHHcCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECc
Confidence 67888999999999999987665532 3345676 4455556543 45899999999885433344544434
Q ss_pred C-CC--CCC---CHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCC-------CC---C-c-EEEEcCcCcC--cc
Q 018300 261 A-YP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPF-------KY---C-D-VVTTTTHKSL--RG 318 (358)
Q Consensus 261 ~-~~--~~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl-------~g---a-D-iv~~S~hK~L--~G 318 (358)
+ || ..+ ++++|.++|+++|++||+|++|. ++.+.+... .++ +. . . +++.|++|.+ +|
T Consensus 838 nhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYs-dL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpG 916 (1082)
T PLN02672 838 TINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFS-GLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGG 916 (1082)
T ss_pred CCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCC-ccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHH
Confidence 3 55 344 47788899999999999999975 444432110 001 11 1 1 5677999875 78
Q ss_pred CcEEEEEEeCCCCchhHHHHHHhh
Q 018300 319 PRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 319 p~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
.|.|+++++++ ++.+++..
T Consensus 917 LRIGylIap~~-----eLi~~l~~ 935 (1082)
T PLN02672 917 HEFGFLALNDS-----VLIDAFHS 935 (1082)
T ss_pred HHheeEEeCCH-----HHHHHHHH
Confidence 89999998764 45555543
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.8e-12 Score=125.58 Aligned_cols=204 Identities=15% Similarity=0.138 Sum_probs=131.1
Q ss_pred hcccccccCCCCcHHHHHHHhhhhhcccCCCCCC-CcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHH
Q 018300 103 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPG-KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 181 (358)
Q Consensus 103 ~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg-~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~ 181 (358)
+.+++.|++..+|+.|++++...+.+....|..- ...+.+.++.+.+++ +++.++++++.+. ++.+.+...|||.++
T Consensus 7 ~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~-~~~~L~~l~~~p~-~y~v~~l~Gsgt~~~ 84 (365)
T PLN02452 7 RVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQK-AEADLRELLDIPD-NYEVLFLQGGASTQF 84 (365)
T ss_pred ceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHH-HHHHHHHHhCCCC-CceEEEEeCccHHHH
Confidence 4578899999999999999998876543333211 112335566665555 7899999999854 343555557889999
Q ss_pred HHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEc--C
Q 018300 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG--A 259 (358)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~--~ 259 (358)
.+++.+++++||++++.. +|.++..+. +.+...|........+....+..+|+++++. ...++.|.+. .
T Consensus 85 ea~~~nl~~~~~~~l~~~---~G~fg~r~~---~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~hnE 155 (365)
T PLN02452 85 AAIPLNLCKPGDKADFVV---TGSWSKKAA---KEAKKYCKTNVIASGKDEKYTKIPSVSEWEL---TPDAKFVHICANE 155 (365)
T ss_pred HHHHHhcCCCCCeEEEEE---CCHHHHHHH---HHHHHhCCCcEEEecCCCCCCCCCChHHcCC---CCCCcEEEECCCC
Confidence 999999999999998875 466654432 1223334322221111111122567776532 1246666553 4
Q ss_pred CCCCCC-CCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 260 SAYPRD-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 260 s~~~~~-~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+.+|.. .|++++. ++++++|+++++|.. |.+++..++.++|.||+| ||.| |+++.+++
T Consensus 156 TstGv~~~~~~~i~------~~~lvVDa~Ss~g~~-----pidv~~~~v~~~saqK~l-GP~Gl~~v~vr~~ 215 (365)
T PLN02452 156 TIHGVEFKDYPDVG------NVPLVADMSSNFLSK-----PVDVSKYGVIYAGAQKNV-GPSGVTIVIIRKD 215 (365)
T ss_pred CCCcEecCcccccC------CCeEEEECCccccCc-----ccCHHHcCEEEEeccccc-CCCCeEEEEEcHH
Confidence 456764 6776654 389999999987753 233334455557999988 7998 88888874
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-11 Score=117.61 Aligned_cols=198 Identities=19% Similarity=0.105 Sum_probs=128.6
Q ss_pred CCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCC--CCcceEEeCCC-HHHHHHHHHH
Q 018300 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN--KWGVNVQPLSG-SPANFEVYTA 187 (358)
Q Consensus 111 ~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~--~~~v~V~~~SG-t~A~~~a~~a 187 (358)
.-.+++.+.+|+...+......||..+ .|.. . +|+.++++++-+.+ --.-.|+.++| ++|+..++.+
T Consensus 76 ~~~ts~~a~~Av~~al~Sgk~N~Yaps---~G~~------~-AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~ 145 (447)
T KOG0259|consen 76 CFRTSQEAEQAVVDALRSGKGNGYAPS---VGIL------P-ARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISS 145 (447)
T ss_pred cccCCHHHHHHHHHHHhcCCCCCcCCc---cccH------H-HHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHH
Confidence 345788888888877766555565431 1222 1 45556666443210 00013555666 5799999999
Q ss_pred hccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC-CCCCHHHHHHHhhhcCCeEEEEcCCC-CCCC
Q 018300 188 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIAGASA-YPRD 265 (358)
Q Consensus 188 ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~iD~d~le~~i~~~~~klIi~~~s~-~~~~ 265 (358)
|.+||-.|+++.| |++-+- + .....++ ++.+|++-|+. ..||++.+|.++++.+..+|+++++| +|..
T Consensus 146 LA~p~aNILlPrP---Gfp~Y~--~---~a~~~~l--EVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnV 215 (447)
T KOG0259|consen 146 LANPGANILLPRP---GFPLYD--T---RAIYSGL--EVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNV 215 (447)
T ss_pred hcCCCCceecCCC---CCchHH--H---hhhhcCc--eeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCccc
Confidence 9999999999876 433211 1 2234454 56666666554 48999999999987444455555544 3444
Q ss_pred C---CHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC----CCcE-EEEcCcCcC--ccCcEEEEEEeCC
Q 018300 266 F---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDV-VTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 266 ~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~----gaDi-v~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
. -+++|+++|+++|+.+|.|+.+. .+++++....|.. -+-+ .+++.+|-+ +|||-|||+..+.
T Consensus 216 ys~~HL~kiae~A~klgi~vIaDEVY~-~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~ 288 (447)
T KOG0259|consen 216 YSEDHLKKIAETAKKLGIMVIADEVYG-HTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDP 288 (447)
T ss_pred ccHHHHHHHHHHHHHhCCeEEehhhcc-eeecCCCCccchhhccccCceEeecccccccccCCceeeeEEEecc
Confidence 3 38899999999999999999754 3444443223333 2334 456888875 8999999999876
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.7e-12 Score=121.70 Aligned_cols=157 Identities=20% Similarity=0.233 Sum_probs=102.9
Q ss_pred eEEeCCCHHHH-HHHHHHh-ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec-CCCCCCCHHHHHHHh
Q 018300 171 NVQPLSGSPAN-FEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTA 247 (358)
Q Consensus 171 ~V~~~SGt~A~-~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~iD~d~le~~i 247 (358)
+|++++|+.++ ..++..+ .++||+|++++|.|.++.. .+...|.. +++++++ ++++.+|+++|++.+
T Consensus 70 ~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~--------~~~~~g~~--~~~~~~~~~~~~~~d~~~l~~~l 139 (363)
T PF00155_consen 70 NILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIE--------AARLLGAE--VIPVPLDSENDFHLDPEALEEAL 139 (363)
T ss_dssp GEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHH--------HHHHTTSE--EEEEEEEETTTTEETHHHHHHHH
T ss_pred EEEEecccccchhhhhhcccccccccceecCCccccccc--------cccccCce--eeecccccccccccccccccccc
Confidence 57788998754 4445555 6799999999887665432 23455664 4444443 245689999999988
Q ss_pred hhc-----CCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCc---cCCCC-CCc-EEEEcC
Q 018300 248 ILF-----RPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV---ADPFK-YCD-VVTTTT 312 (358)
Q Consensus 248 ~~~-----~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~---~~pl~-gaD-iv~~S~ 312 (358)
++. ++++|++..+++| ...+ +++|+++|+++|+++++|++|.......... ...++ +.+ +++.|+
T Consensus 140 ~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~ 219 (363)
T PF00155_consen 140 DELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSL 219 (363)
T ss_dssp HTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEES
T ss_pred ccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeec
Confidence 753 4677877666654 4555 4555566999999999999987443321111 01122 334 889999
Q ss_pred cCcC--ccCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 313 HKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 313 hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
+|.+ +|.|.|++++++ ++.+.+...
T Consensus 220 SK~~g~~GlRvG~i~~~~------~~~~~l~~~ 246 (363)
T PF00155_consen 220 SKSFGLPGLRVGYIVAPP------ELIERLRRF 246 (363)
T ss_dssp TTTTTSGGGTEEEEEEEH------HHHHHHHHH
T ss_pred cccccccccccccccchh------hhhhhhhhc
Confidence 9986 566779999966 555555543
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.3e-12 Score=127.80 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=104.3
Q ss_pred eEEeCCCH-HHHHHHHHH-----hccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC-CCCCHHHH
Q 018300 171 NVQPLSGS-PANFEVYTA-----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDML 243 (358)
Q Consensus 171 ~V~~~SGt-~A~~~a~~a-----ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~iD~d~l 243 (358)
+|+.++|+ +|+..++.+ +++|||+|++++|.+..+.. .+.+.+..+++++++.++++ ..+|.+++
T Consensus 163 ~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~--------~~~l~g~~~~~v~v~~~~~~~f~~d~~~l 234 (527)
T PRK09275 163 DLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLE--------IPELPRYDLEVVHINADEENEWQYPDSEL 234 (527)
T ss_pred eEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHH--------HHHHcCCCeEEEEeecCcccCCCCCHHHH
Confidence 56667665 588888876 68999999999987665432 22344544566777665443 57999999
Q ss_pred HHHhhhcCCeEEEEcCCCCCC--CCC---HHHHHHHHHH--cCCEEEEeccccccccccCCccCCCC---CCcEEEEcCc
Q 018300 244 EKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTH 313 (358)
Q Consensus 244 e~~i~~~~~klIi~~~s~~~~--~~d---l~~I~~ia~e--~g~~livD~Ah~~Gl~~~g~~~~pl~---gaDiv~~S~h 313 (358)
++++. .++|+|++..++||+ ..+ +++|+++|++ ++++||+|+++. .+.. ...+.+. .--+++.|++
T Consensus 235 ~~~~~-~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~-~f~~--~~~s~~~~~~~~~I~v~SfS 310 (527)
T PRK09275 235 EKLRD-PSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYG-TFVD--DFRSLFAVLPYNTILVYSFS 310 (527)
T ss_pred HhhcC-CCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCCh-hhcc--cccCHHHhCCCCEEEEeehh
Confidence 99765 478998887777764 455 7788888965 499999999975 3332 1112121 2237889999
Q ss_pred CcC--ccCcEEEEEEeCC
Q 018300 314 KSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 314 K~L--~Gp~GG~I~~~~~ 329 (358)
|++ +|+|-|+++++++
T Consensus 311 K~f~mtG~RlG~i~~~~~ 328 (527)
T PRK09275 311 KYFGATGWRLGVIALHED 328 (527)
T ss_pred hhccCcHhHHhhhhcCch
Confidence 996 7899999999875
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-11 Score=125.25 Aligned_cols=178 Identities=20% Similarity=0.145 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCC----cceEEeCCCHHHHHHHHHHh----ccC------CC-EEEecCCCCCccccc
Q 018300 144 EYIDELETLCQKRALAAFNLDENKW----GVNVQPLSGSPANFEVYTAI----LKP------HD-RIMGLDLPHGGHLSH 208 (358)
Q Consensus 144 ~~~~~lE~~~~~~la~lfg~~~~~~----~v~V~~~SGt~A~~~a~~al----l~p------GD-~Vl~~~~~~ggh~s~ 208 (358)
+...++|+.+.+|+++++|.+...+ +--++.++||+||+.++.+. .+. .+ .|++++. +|.+.
T Consensus 166 Pa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~---aH~Sv 242 (539)
T PLN02590 166 PAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQ---THSSF 242 (539)
T ss_pred chhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCC---chHHH
Confidence 4456799999999999999986311 11355678888998877553 110 12 3333442 44442
Q ss_pred ccccchhccccCCceE-EEEeceecC-CCCCCCHHHHHHHhhhc-----CCeEEEE--cCCCCCCCCCHHHHHHHHHHcC
Q 018300 209 GFMTPKRRVSGTSIYF-ESMPYRLDE-STGLVDYDMLEKTAILF-----RPKLIIA--GASAYPRDFDYPRMRQIADAVG 279 (358)
Q Consensus 209 ~~~~~~~~~~~~g~~~-~~~~~~~~~-~~~~iD~d~le~~i~~~-----~~klIi~--~~s~~~~~~dl~~I~~ia~e~g 279 (358)
.|++.+.|..- .+..++++. +++.+|+++|++.+++. .|-+|+. +.+.+|..-|+++|.++|+++|
T Consensus 243 -----~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g 317 (539)
T PLN02590 243 -----RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYG 317 (539)
T ss_pred -----HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhC
Confidence 13455666531 123344553 25689999999998542 2444444 4455677888999999999999
Q ss_pred CEEEEeccccccccccCCcc---CCCCCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 280 ALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 280 ~~livD~Ah~~Gl~~~g~~~---~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
++++||+|++.......... ..++.+|-++.++||||..|-+ |++++++.
T Consensus 318 ~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~ 371 (539)
T PLN02590 318 IWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDR 371 (539)
T ss_pred CeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCH
Confidence 99999999764333222111 1234789999999999988876 78888764
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=126.94 Aligned_cols=170 Identities=18% Similarity=0.154 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCc-ceEEeCCCH-HHHHHHHHH-----hccCCCEEEecCCCCCcccccccccchhccccC
Q 018300 148 ELETLCQKRALAAFNLDENKWG-VNVQPLSGS-PANFEVYTA-----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT 220 (358)
Q Consensus 148 ~lE~~~~~~la~lfg~~~~~~~-v~V~~~SGt-~A~~~a~~a-----ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~ 220 (358)
..|+.+++++.+.++....... .+|+.++|+ +|+..++.+ +++|||+|++++|.+..+.. .+.+.
T Consensus 133 ~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~--------~~~l~ 204 (521)
T TIGR03801 133 HSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLE--------IPELP 204 (521)
T ss_pred HHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHH--------HHHHh
Confidence 4555555566665443211110 156666665 588888776 78999999999987665432 12334
Q ss_pred CceEEEEeceecCCC------CCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCC---HHHHHHHHHHc--CCEEEEecc
Q 018300 221 SIYFESMPYRLDEST------GLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAV--GALLMMDMA 287 (358)
Q Consensus 221 g~~~~~~~~~~~~~~------~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~d---l~~I~~ia~e~--g~~livD~A 287 (358)
+..+++++++.++++ ..+|.+++++++. .++|+|++..++||+ ..+ +++|+++|+++ +++||+|.+
T Consensus 205 ~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~-~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEv 283 (521)
T TIGR03801 205 RYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD-PSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDV 283 (521)
T ss_pred cCCcEEEEeecccccccccccCCCCHHHHHHhcC-CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 333455665554322 5689999998764 478988876667664 454 77888899987 999999999
Q ss_pred ccccccccCCccCCCC---CCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 288 HISGLVAASVVADPFK---YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 288 h~~Gl~~~g~~~~pl~---gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
+. .+.. ...+.+. .--+++.|++|++ +|+|-|+++.+++
T Consensus 284 Y~-~f~~--~~~sl~~~~~~~vI~v~SfSK~fg~~G~RlG~i~~~~~ 327 (521)
T TIGR03801 284 YG-TFVD--DFRSLFAELPYNTIGVYSFSKYFGATGWRLGTIALHKD 327 (521)
T ss_pred ch-hhcc--cccchhhhCCCCEEEEEcchhhccCchhhhhhhhcCch
Confidence 75 3332 1222222 1237789999996 7899999998865
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.3e-11 Score=117.74 Aligned_cols=196 Identities=15% Similarity=0.134 Sum_probs=122.9
Q ss_pred cCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCC-cHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh
Q 018300 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 110 s~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G-~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al 188 (358)
+.+..++++++++...+...-.- .|+.+ .....++.. ..+.++.++|++.. +.+++.+.|++.++.++
T Consensus 35 G~s~~~~e~iea~~~~~~~~v~L-----e~~l~~g~~~~R~~~-~~~~~~~~~~aea~-----~ivnnn~aAVll~~~al 103 (395)
T COG1921 35 GRSLYSPEAIEAMKEAMRAPVEL-----ETDLKTGKRGARLTE-LAELLCGLTGAEAA-----AIVNNNAAAVLLTLNAL 103 (395)
T ss_pred CCccCCHHHHHHHHHHhccccee-----eeecccchhhHHHHH-HHHHHhcccchhhe-----eeECCcHHHHHHHHhhh
Confidence 56778999999987765433221 11111 122233333 23334555555552 44567777999888888
Q ss_pred ccCCCEEEecCCCC-CcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeE-EEEcCCCCCC--
Q 018300 189 LKPHDRIMGLDLPH-GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKL-IIAGASAYPR-- 264 (358)
Q Consensus 189 l~pGD~Vl~~~~~~-ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~kl-Ii~~~s~~~~-- 264 (358)
..++..|+.--..- ||++... ..+...|.. .+.++ +++.-...+.+..+.+ ++++ +-+..++|+.
T Consensus 104 ~~~~EvVis~g~lV~gg~~~v~-----d~~~~aG~~--l~EvG---~tn~t~~~d~~~AIne-~ta~llkV~s~~~~f~~ 172 (395)
T COG1921 104 AEGKEVVVSRGELVEGGAFRVP-----DIIRLAGAK--LVEVG---TTNRTHLKDYELAINE-NTALLLKVHSSNYGFTG 172 (395)
T ss_pred ccCCeEEEEccccccCCCCChh-----HHHHHcCCE--EEEec---ccCcCCHHHHHHHhcc-CCeeEEEEeeccccccc
Confidence 77555555432111 4555422 234566763 44433 2345677888888876 5554 4455667765
Q ss_pred CCCHHHHHHHHHHcCCEEEEeccccccccccCC--ccCCCC-CCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 265 DFDYPRMRQIADAVGALLMMDMAHISGLVAASV--VADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 265 ~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~--~~~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
..+.++++++||++|+++++|.+ +|...... ...-+. |+|+|++|++|.|.||++|+|+++++
T Consensus 173 ~l~~~~l~~ia~~~~lpvivD~a--Sg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPqaGii~GkKe 238 (395)
T COG1921 173 MLSEEELVEIAHEKGLPVIVDLA--SGALVDKEPDLREALALGADLVSFSGDKLLGGPQAGIIVGKKE 238 (395)
T ss_pred cccHHHHHHHHHHcCCCEEEecC--CccccccccchhHHHhcCCCEEEEecchhcCCCccceEechHH
Confidence 46678899999999999999996 34321111 111233 99999999999999999999999995
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-11 Score=122.99 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=92.8
Q ss_pred CCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee-cCCCCCCCHHHHHHHhhh--cCC
Q 018300 176 SGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAIL--FRP 252 (358)
Q Consensus 176 SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~iD~d~le~~i~~--~~~ 252 (358)
+|+.++...+..++.|||+|++++|.|.+|.. .+...|. +++++++ ++++..+|++.+++.+.. .++
T Consensus 126 ~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~--------~~~~~g~--~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~ 195 (423)
T PLN02397 126 TGSLRLGAEFLARFYPGSTIYIPNPTWGNHHN--------IFRDAGV--PVRTYRYYDPKTRGLDFDGLLEDLKAAPDGS 195 (423)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCchhHHH--------HHHHcCC--eEEEeecccCcCCccCHHHHHHHHHhCCCCC
Confidence 33444555666667799999999987766532 2345565 4445544 233467999988877653 245
Q ss_pred eEEEEcCCCCCC--CC---CHHHHHHHHHHcCCEEEEeccccccccccCC---ccC--CCC-CCc--EEEEcCcCcC--c
Q 018300 253 KLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV---VAD--PFK-YCD--VVTTTTHKSL--R 317 (358)
Q Consensus 253 klIi~~~s~~~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~---~~~--pl~-gaD--iv~~S~hK~L--~ 317 (358)
+++++..++||+ .. ++++|+++|+++|+++++|.++. ++.+.+. .+. .+. ..+ +++.|++|++ +
T Consensus 196 ~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~ 274 (423)
T PLN02397 196 FVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQ-GFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLY 274 (423)
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccC-CccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCc
Confidence 677777677654 43 47788899999999999999954 6654331 111 121 112 6688999997 5
Q ss_pred cCcEEEEE
Q 018300 318 GPRGGMIF 325 (358)
Q Consensus 318 Gp~GG~I~ 325 (358)
|+|-|+++
T Consensus 275 G~RvG~~v 282 (423)
T PLN02397 275 GERVGALS 282 (423)
T ss_pred cccceEEE
Confidence 89999985
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-11 Score=118.74 Aligned_cols=192 Identities=14% Similarity=0.098 Sum_probs=124.9
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhccC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKP 191 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~p 191 (358)
.+++.+++++.+.+......+||. .|.+ + .|+.+++++|++++ +|.+++|+. ++..++..+ +
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~Y~~----~g~~---~----lr~~ia~~~~~~~~----~I~~t~G~~~~l~~~~~~~--~ 93 (337)
T PRK03967 31 DLPEELKEEIFEELKRVPFNRYPH----ITSD---P----LREAIAEFYGLDAE----NIAVGNGSDELISYLVKLF--E 93 (337)
T ss_pred CCCHHHHHHHHHHhhcCccccCCC----CCHH---H----HHHHHHHHhCcCcc----eEEEcCCHHHHHHHHHHHh--C
Confidence 457889999877654322233442 1221 2 34557888898874 566777765 777666554 8
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHH
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYP 269 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~ 269 (358)
||+|++.++.|+.+.. .....|. ++++++++. ++.+|++.+++.. .++|++++..++|| ...+.+
T Consensus 94 gd~V~v~~P~y~~~~~--------~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~~--~~~~~v~~~~P~NPtG~~~~~~ 160 (337)
T PRK03967 94 GKHIVITPPTFGMYSF--------YAKLNGI--PVIDVPLKE-DFTIDGERIAEKA--KNASAVFICSPNNPTGNLQPEE 160 (337)
T ss_pred CCeEEEeCCChHHHHH--------HHHHcCC--eEEEeecCC-CCCcCHHHHHHhc--cCCCEEEEeCCCCCCCCCCCHH
Confidence 9999999886653311 1234565 445555553 4579999998864 36787777666654 578899
Q ss_pred HHHHHHHHcCCEEEEeccccccccccCCccCCCC-CC-cEEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 270 RMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YC-DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 270 ~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-ga-Div~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
+|.++++ +++++++|+++. .+.. ......++ .- -+++.|++|++ +|.|.|++++++ ++.+++...
T Consensus 161 ~l~~i~~-~~~~ii~De~y~-~~~~-~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~------~~i~~~~~~ 229 (337)
T PRK03967 161 EILKVLE-TGKPVVLDEAYA-EFSG-KSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANE------EIIDALYRI 229 (337)
T ss_pred HHHHHHh-cCCEEEEECchh-hhcc-cchHHHHhhCCCEEEEecchHhhcchhhhheeeecCH------HHHHHHHhh
Confidence 9999995 699999999976 3321 11111111 11 27789999997 577889999876 555666554
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=121.20 Aligned_cols=171 Identities=16% Similarity=0.098 Sum_probs=112.8
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCC-CEEEecCCCCCcccccccccchhccccCCceEEEEece
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~ 230 (358)
.++.+++++|++++ +|.+++|+ +++..++.+++++| |+|++.++.++.+.. .....|. ++++++
T Consensus 64 lr~~ia~~~~~~~~----~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~--------~~~~~g~--~~~~v~ 129 (364)
T PRK04781 64 LRSALAALYGCAPE----QLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAV--------CARLQNA--PLVEVP 129 (364)
T ss_pred HHHHHHHHhCcChH----HEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHH--------HHHHcCC--EEEEEe
Confidence 35557888898874 57777775 58999999999999 789988875443211 1234565 444554
Q ss_pred ecC-CC-CCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHH--cCCEEEEeccccccccccCCccCCCCC
Q 018300 231 LDE-ST-GLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFKY 304 (358)
Q Consensus 231 ~~~-~~-~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e--~g~~livD~Ah~~Gl~~~g~~~~pl~g 304 (358)
++. ++ ..+|++++.+.+...++++|++..+++| ...+.+++.++++. .++++++|+++. .+.........++.
T Consensus 130 ~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~-~f~~~~~~~~~~~~ 208 (364)
T PRK04781 130 LVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYG-EFSDVPSAVGLLAR 208 (364)
T ss_pred cCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcch-hhcCCcchHHHHhh
Confidence 532 22 3679998866554457898888666654 57888888877765 378999999965 33321110011121
Q ss_pred Cc--EEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhhcc
Q 018300 305 CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAV 344 (358)
Q Consensus 305 aD--iv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~~~ 344 (358)
.| +++.|++|++ +|.|-|+++.++ ++.+++....
T Consensus 209 ~~~vi~~~SfSK~~gl~GlRvGy~v~~~------~l~~~l~~~~ 246 (364)
T PRK04781 209 YDNLAVLRTLSKAHALAAARIGSLIANA------ELIAVLRRCQ 246 (364)
T ss_pred CCCEEEEecChhhcccccceeeeeeCCH------HHHHHHHhcc
Confidence 12 7789999986 688999999876 5666665543
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-11 Score=121.75 Aligned_cols=167 Identities=16% Similarity=0.121 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHcC----CCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccc-cCC
Q 018300 148 ELETLCQKRALAAFN----LDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTS 221 (358)
Q Consensus 148 ~lE~~~~~~la~lfg----~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~-~~g 221 (358)
.+.+.+.+.+.+.+| ++++ +|++++|+ .|+.+++.++++|||.|+++.|.|+++.. .+. ..|
T Consensus 99 ~LR~aiA~~l~~~~~~~~~v~p~----~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~--------~~~~~~g 166 (447)
T PLN02607 99 SFRQAMASFMEQIRGGKARFDPD----RIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDR--------DLRWRTG 166 (447)
T ss_pred HHHHHHHHHHHHhcCCCCCcCHH----HeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHhcCC
Confidence 566666677777766 3443 46667765 58888888899999999999988776532 112 235
Q ss_pred ceEEEEeceecCCC-CCCCHHHHHHHhhh-----cCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccc
Q 018300 222 IYFESMPYRLDEST-GLVDYDMLEKTAIL-----FRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 222 ~~~~~~~~~~~~~~-~~iD~d~le~~i~~-----~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~ 290 (358)
. ++++++.++++ ..+|.+++++.++. .++|+|++..++|| +..+ +++|.++|+++|+.+|+|++++
T Consensus 167 ~--~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa- 243 (447)
T PLN02607 167 V--KIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYS- 243 (447)
T ss_pred c--EEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEecccc-
Confidence 4 55666665433 36899999988754 36787777666665 4454 7888899999999999999975
Q ss_pred cccccC-CccCCC------C--C-Cc--EEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 291 GLVAAS-VVADPF------K--Y-CD--VVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 291 Gl~~~g-~~~~pl------~--g-aD--iv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
+.++.+ .+++.+ + . -+ +++.|++|.| +|.|-|++++..+
T Consensus 244 ~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~ 296 (447)
T PLN02607 244 GSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYND 296 (447)
T ss_pred ccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCH
Confidence 333322 122111 0 1 12 5678999986 6788899998544
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=123.23 Aligned_cols=141 Identities=16% Similarity=0.231 Sum_probs=94.3
Q ss_pred eCCCHHHHHHHHH---HhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec-CCCCCCCHHHHHHHhhh
Q 018300 174 PLSGSPANFEVYT---AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAIL 249 (358)
Q Consensus 174 ~~SGt~A~~~a~~---all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~iD~d~le~~i~~ 249 (358)
+.+|+.|+..++. ++++|||+|++.+|.|.++.. .+...|. +++++++. +++..+|++.+++.++.
T Consensus 103 t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~--------~~~~~G~--~~~~v~l~~~~~~~~d~~~l~~~~~~ 172 (404)
T PTZ00376 103 ALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVN--------IFKSAGL--NVKEYRYYDPKTKGLDFDGMLEDLRT 172 (404)
T ss_pred ccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHcCC--ceeeccccCcccCCcCHHHHHHHHHh
Confidence 3445567766654 668999999999987766532 2345665 44555553 23468999999998754
Q ss_pred c--CCeEEEEcCCCCCC--CC---CHHHHHHHHHHcCCEEEEeccccccccccCC---cc--CCCC-CC-c-EEEEcCcC
Q 018300 250 F--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV---VA--DPFK-YC-D-VVTTTTHK 314 (358)
Q Consensus 250 ~--~~klIi~~~s~~~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~---~~--~pl~-ga-D-iv~~S~hK 314 (358)
. +.+++++..++||+ .. ++++|.++|++||+++++|.++. ++...+. .+ ..+. .. . +++.|++|
T Consensus 173 ~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~-~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK 251 (404)
T PTZ00376 173 APNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQ-GFASGDLDKDAYAIRLFAERGVEFLVAQSFSK 251 (404)
T ss_pred CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhc-CccCCCHHHHHHHHHHHHhcCCcEEEEEeCCC
Confidence 2 34566667677664 43 46788889999999999999854 4443220 00 1111 11 2 77899999
Q ss_pred cC--ccCcEEEEE
Q 018300 315 SL--RGPRGGMIF 325 (358)
Q Consensus 315 ~L--~Gp~GG~I~ 325 (358)
++ +|.|-|+++
T Consensus 252 ~~~~~GlRvG~~~ 264 (404)
T PTZ00376 252 NMGLYGERIGALH 264 (404)
T ss_pred cccccccccceEE
Confidence 97 588999984
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-12 Score=119.82 Aligned_cols=208 Identities=25% Similarity=0.323 Sum_probs=146.5
Q ss_pred hcccccccCCCC----cHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH
Q 018300 103 KSLELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 178 (358)
Q Consensus 103 ~~i~lias~n~~----s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt 178 (358)
.+|.....+||. +|.+.++-...+ ..|..|..+.|+..|+..+.+. .+..++.+-+.++ .+...|+.
T Consensus 67 k~ilnFcaNnYLGLsshPeii~a~~~al-eeyGaGlssvrfIcGtq~iHk~---LE~kiAqfh~rED-----~ilypscf 137 (417)
T KOG1359|consen 67 KKILNFCANNYLGLSSHPEIINAGQKAL-EEYGAGLSSVRFICGTQDIHKL---LESKIAQFHGRED-----TILYPSCF 137 (417)
T ss_pred cceeeecccccccccCChHHHHHHHHHH-HHhCCCccceeEEecchHHHHH---HHHHHHHHhCCCc-----eEEecccc
Confidence 445555788886 888998877665 4566788888999998755432 2345788877776 36778999
Q ss_pred HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHh---hhcCCeEE
Q 018300 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA---ILFRPKLI 255 (358)
Q Consensus 179 ~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i---~~~~~klI 255 (358)
.||..++.+++.|.|-|+...+.|.+-+ ++ +.+.. . .+.+|.-.++..+ .+.|-|+|
T Consensus 138 dANag~feail~pedAvfSDeLNhASII-dG-------irLck------r------y~h~dv~~l~~~l~~a~k~r~klv 197 (417)
T KOG1359|consen 138 DANAGAFEAILTPEDAVFSDELNHASII-DG-------IRLCK------R------YRHVDVFDLEHCLISACKMRLKLV 197 (417)
T ss_pred ccchHHHHHhcChhhhhhccccccchhh-hh-------hHHHh------h------hccchhHHHHHHHHHhhhheEEEE
Confidence 9999999999999999998877554321 11 12221 1 1344555555433 23466788
Q ss_pred EEcC--CCCCCCCCHHHHHHHHHHcCCEEEEecccccccccc-CCc-cCCC---CCCcEEEEcCcCcCccCcEEEEEEeC
Q 018300 256 IAGA--SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SVV-ADPF---KYCDVVTTTTHKSLRGPRGGMIFFKK 328 (358)
Q Consensus 256 i~~~--s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~~-~~pl---~gaDiv~~S~hK~L~Gp~GG~I~~~~ 328 (358)
+.+. |.-|-..|+++|.+++++||++|++|.+|+.|+... |.- ...+ ..+|++..++.|.++|-.||+..+.+
T Consensus 198 ~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~GGyttgp~ 277 (417)
T KOG1359|consen 198 VTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPK 277 (417)
T ss_pred EecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCCCCccCCh
Confidence 7753 344667889999999999999999999999987652 211 1112 26799999999999999999999998
Q ss_pred CCCchhHHHHHHhhccC
Q 018300 329 DPVLGVELESAINNAVF 345 (358)
Q Consensus 329 ~~~~~~~~~~~i~~~~f 345 (358)
+ +.+.|++..-
T Consensus 278 ~------li~llrqr~R 288 (417)
T KOG1359|consen 278 P------LISLLRQRSR 288 (417)
T ss_pred h------HHHHHHhcCC
Confidence 5 5555555433
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.9e-12 Score=130.96 Aligned_cols=161 Identities=15% Similarity=0.049 Sum_probs=113.2
Q ss_pred HHHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEece
Q 018300 152 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (358)
Q Consensus 152 ~~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~ 230 (358)
.+++.++++||++.. .+.++|| .+|.+++.++++|||+|++.. ++|.|.. ..+.++|.....+.-.
T Consensus 199 eAe~~AA~~fgAd~t-----yfvvNGTS~~n~av~~a~~~~Gd~VLvdR---N~HKSv~-----haLilsga~PVYl~P~ 265 (714)
T PRK15400 199 EAEEYIARVFNADRS-----YMVTNGTSTANKIVGMYSAPAGSTVLIDR---NCHKSLT-----HLMMMSDVTPIYFRPT 265 (714)
T ss_pred HHHHHHHHHhCCCcE-----EEEeCchHHHHHHHHHHhcCCCCEEEeec---ccHHHHH-----HHHHHcCCeEEEeccc
Confidence 467778999999984 4456775 599999999999999999865 5776632 1455677633222211
Q ss_pred ecCCCC---CCC-----HHHHHHHhhhc----CCe-EEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCC
Q 018300 231 LDESTG---LVD-----YDMLEKTAILF----RPK-LIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASV 297 (358)
Q Consensus 231 ~~~~~~---~iD-----~d~le~~i~~~----~~k-lIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~ 297 (358)
.+ ..| .|+ .+.+++.+.++ +|+ +|+++++.+|...|++.|.++|+.++ +++|+||...+.+.+.
T Consensus 266 rn-~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~ 342 (714)
T PRK15400 266 RN-AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPI 342 (714)
T ss_pred cc-ccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcc
Confidence 22 222 345 89999888653 222 45556666799999999999999887 6899999876655444
Q ss_pred cc--CCCC-CC---c--EEEEcCcCcCccCc-EEEEEEeC
Q 018300 298 VA--DPFK-YC---D--VVTTTTHKSLRGPR-GGMIFFKK 328 (358)
Q Consensus 298 ~~--~pl~-ga---D--iv~~S~hK~L~Gp~-GG~I~~~~ 328 (358)
++ +++. ++ | +++.|+||+|++.. +.+|..+.
T Consensus 343 ~~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg 382 (714)
T PRK15400 343 YEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKG 382 (714)
T ss_pred cCCcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcC
Confidence 43 4554 66 5 99999999999874 56666654
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=129.10 Aligned_cols=161 Identities=13% Similarity=0.061 Sum_probs=110.9
Q ss_pred HHHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEece
Q 018300 152 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (358)
Q Consensus 152 ~~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~ 230 (358)
.+++.++++||++.. .+.++|| .+|.+++.++++|||+|++.. ++|.|.. ..+.++|....++.-.
T Consensus 199 eAe~~aA~~fgAd~t-----yfvvNGTS~~n~av~~a~~~~Gd~VLvdR---N~HKSv~-----~aLilsga~PVYl~P~ 265 (713)
T PRK15399 199 EAEEYIARTFGAEQS-----YIVTNGTSTSNKIVGMYAAPAGSTLLIDR---NCHKSLA-----HLLMMSDVVPIWLKPT 265 (713)
T ss_pred HHHHHHHHHhCCCcE-----EEEeCChHHHHHHHHHHhcCCCCEEEeec---ccHHHHH-----HHHHHcCCeeEEeccc
Confidence 367778999999984 4456775 499999999999999999865 5776632 1455677633222211
Q ss_pred ecCCCC---CCCH-----HHHHHHhhhc----CCeEEEE-cCCCCCCCCCHHHHHHHHHHcCCEE-EEeccccccccccC
Q 018300 231 LDESTG---LVDY-----DMLEKTAILF----RPKLIIA-GASAYPRDFDYPRMRQIADAVGALL-MMDMAHISGLVAAS 296 (358)
Q Consensus 231 ~~~~~~---~iD~-----d~le~~i~~~----~~klIi~-~~s~~~~~~dl~~I~~ia~e~g~~l-ivD~Ah~~Gl~~~g 296 (358)
.+ ..| .|+. +.+++.+.++ +|+.+++ +++.+|...|+++|.++| |+.+ ++|+||...+.+.+
T Consensus 266 ~n-~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p 341 (713)
T PRK15399 266 RN-ALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHP 341 (713)
T ss_pred cc-ccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCc
Confidence 12 222 3555 8888888643 3455555 555578999999999998 6766 69999986654444
Q ss_pred Ccc--CCCC---CCcEE---EEcCcCcCccC-cEEEEEEeCC
Q 018300 297 VVA--DPFK---YCDVV---TTTTHKSLRGP-RGGMIFFKKD 329 (358)
Q Consensus 297 ~~~--~pl~---gaDiv---~~S~hK~L~Gp-~GG~I~~~~~ 329 (358)
.++ +++. ++|.+ +.|+||+|++. ++.+|..+..
T Consensus 342 ~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~ 383 (713)
T PRK15399 342 IYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGE 383 (713)
T ss_pred ccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCC
Confidence 332 3342 47877 99999999997 4578877653
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.6e-11 Score=115.30 Aligned_cols=201 Identities=12% Similarity=0.082 Sum_probs=127.0
Q ss_pred ccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HH
Q 018300 105 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-AN 181 (358)
Q Consensus 105 i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~ 181 (358)
++|--.+| .+++.+++++...+.. ..+|+.. + ..++ ++.++++++++++ +|.+++|+. ++
T Consensus 25 i~l~~~~n~~~~~~~~~~a~~~~~~~--~~~Y~~~----~---~~~L----r~aia~~~~v~~~----~I~it~G~~~~i 87 (360)
T PRK07392 25 LDFSASINPLGPPESVIAAIQSALSA--LRHYPDP----D---YREL----RLALAQHHQLPPE----WILPGNGAAELL 87 (360)
T ss_pred EEeCCcCCCCCCCHHHHHHHHHHHHH--hhcCCCc----C---HHHH----HHHHHHHhCcChh----hEEECCCHHHHH
Confidence 44433334 4678899988765543 2234321 1 1233 4446777788874 466777775 88
Q ss_pred HHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCC----CCCHHHHHHHhhhcCCeEEEE
Q 018300 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG----LVDYDMLEKTAILFRPKLIIA 257 (358)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~iD~d~le~~i~~~~~klIi~ 257 (358)
..++.++ .+||+|++.+|.|.++.. .+...|.. +++++++++++ ..|++++++.. .+++++++
T Consensus 88 ~~~~~~l-~~g~~vlv~~P~y~~~~~--------~~~~~g~~--~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l 154 (360)
T PRK07392 88 TWAGREL-AQLRAVYLITPAFGDYRR--------ALRAFGAT--VKELPLPLDQPSPGLTLRLQTLPPQL--TPNDGLLL 154 (360)
T ss_pred HHHHHHh-CCCCeEEEECCCcHHHHH--------HHHHcCCe--EEEEecccccCCcccccCHHHHHHhc--cCCCEEEE
Confidence 8787775 478999999887665432 23455654 44555554333 25677776543 25788877
Q ss_pred cCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCC---CCC--cEEEEcCcCcC--ccCcEEEEEEeC
Q 018300 258 GASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYC--DVVTTTTHKSL--RGPRGGMIFFKK 328 (358)
Q Consensus 258 ~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~ga--Div~~S~hK~L--~Gp~GG~I~~~~ 328 (358)
..++|| ...+-++|.++++++++ +++|+++. .+...+..++.+ +.. =+++.|++|++ +|.|-|++++++
T Consensus 155 ~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~-~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~ 232 (360)
T PRK07392 155 NNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFM-DFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHP 232 (360)
T ss_pred eCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchh-hhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCH
Confidence 666765 57788999999999985 66699965 544333222212 211 27788999986 688999999876
Q ss_pred CCCchhHHHHHHhhc
Q 018300 329 DPVLGVELESAINNA 343 (358)
Q Consensus 329 ~~~~~~~~~~~i~~~ 343 (358)
++.+++...
T Consensus 233 ------~~~~~~~~~ 241 (360)
T PRK07392 233 ------DRLQRWQQW 241 (360)
T ss_pred ------HHHHHHHhh
Confidence 455555543
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-11 Score=116.95 Aligned_cols=202 Identities=15% Similarity=0.149 Sum_probs=126.2
Q ss_pred ccccccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HH
Q 018300 105 LELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-AN 181 (358)
Q Consensus 105 i~lias~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~ 181 (358)
++|-..++. +++.+.+++.+.+.. ..+||.. + ..+ .|+.++++++++++ +|.+++|+. ++
T Consensus 22 ~~l~~~~~~~~~p~~~~~a~~~~~~~--~~~Y~~~----~---~~~----lr~~ia~~~~~~~~----~i~it~Ga~~~l 84 (354)
T PRK06358 22 LDFSANINPLGVPESLKQAITENLDK--LVEYPDP----D---YLE----LRKRIASFEQLDLE----NVILGNGATELI 84 (354)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHh--hhcCCCc----c---HHH----HHHHHHHHhCCChh----hEEECCCHHHHH
Confidence 455444443 478899998876532 1234321 1 122 45567888898875 567778775 88
Q ss_pred HHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC-CCCCHHHHHHHhhhcCCeEEEEcCC
Q 018300 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIAGAS 260 (358)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~iD~d~le~~i~~~~~klIi~~~s 260 (358)
..++.++ .+ |+|++.+|.++.+.. .+...|.. ++++++++++ ..+| +++.+.+.. ++++|++..+
T Consensus 85 ~~~~~~~-~~-~~v~i~~P~y~~~~~--------~~~~~g~~--~~~~~~~~~~~~~~d-~~~~~~~~~-~~~~v~~~~P 150 (354)
T PRK06358 85 FNIVKVT-KP-KKVLILAPTFAEYER--------ALKAFDAE--IEYAELTEETNFAAN-EIVLEEIKE-EIDLVFLCNP 150 (354)
T ss_pred HHHHHHh-CC-CcEEEecCChHHHHH--------HHHHcCCe--eEEEeCccccCCCcc-HHHHHhhcc-CCCEEEEeCC
Confidence 8877775 44 688888876654421 22345653 4445555333 3688 666555543 6888877666
Q ss_pred CCCC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCC---CCCc--EEEEcCcCcC--ccCcEEEEEEeC
Q 018300 261 AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCD--VVTTTTHKSL--RGPRGGMIFFKK 328 (358)
Q Consensus 261 ~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~gaD--iv~~S~hK~L--~Gp~GG~I~~~~ 328 (358)
+||+ ..+ +++|.++|+++|+++++|+++. .+...+..+..+ +..+ +++.|++|++ +|.|.|+++..+
T Consensus 151 ~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~-~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~ 229 (354)
T PRK06358 151 NNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFM-DFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSN 229 (354)
T ss_pred CCCCCCccCHHHHHHHHHHHHhcCCEEEEeCccc-ccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCC
Confidence 6654 454 7788889999999999999964 444433222222 2112 7789999996 688899998854
Q ss_pred CCCchhHHHHHHhhc
Q 018300 329 DPVLGVELESAINNA 343 (358)
Q Consensus 329 ~~~~~~~~~~~i~~~ 343 (358)
+ ++.+++...
T Consensus 230 ~-----~~~~~~~~~ 239 (354)
T PRK06358 230 K-----NLAEKLLQM 239 (354)
T ss_pred H-----HHHHHHHHh
Confidence 4 455555543
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-12 Score=124.39 Aligned_cols=188 Identities=17% Similarity=0.225 Sum_probs=39.5
Q ss_pred CCCcHHHHHHHhhhhhccc------CCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHH
Q 018300 112 NFTSRAVMEAVGSCLTNKY------SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~------~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~ 185 (358)
.+.++++.+++.....+.. ..|-.|+|| +.+++ .++.++|++.+ +.+++.+.|++.++
T Consensus 16 s~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~-------~~v~~----ll~~ltgAeaA-----~VvNnnaAAv~L~l 79 (367)
T PF03841_consen 16 SPLSEEAIEAVAEVASGYSNLEYDLETGKRGSRY-------AHVEE----LLCELTGAEAA-----LVVNNNAAAVLLAL 79 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc-------ccccc----ccccccccccc-----cccccccccccccc
Confidence 3467778877765433221 122223232 22333 46789999974 34567777888888
Q ss_pred HHhccCCCEEEecC---CCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEE-EEcCCC
Q 018300 186 TAILKPHDRIMGLD---LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI-IAGASA 261 (358)
Q Consensus 186 ~all~pGD~Vl~~~---~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klI-i~~~s~ 261 (358)
.++. +|.+|++.. .+.||.+... ..+..+|. +.+.++.. ..-.+++.++.+.+ ++.+| .++.||
T Consensus 80 ~~la-~~~EvIvsRGelVeiGgsFRip-----~vm~~sGa--~lvEVGtt---N~t~~~Dye~AI~e-~Ta~ll~Vh~Sn 147 (367)
T PF03841_consen 80 NTLA-KGKEVIVSRGELVEIGGSFRIP-----DVMRQSGA--RLVEVGTT---NRTHLSDYEKAITE-NTAALLKVHTSN 147 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc-cccccccccccccccccccccc-----cccccccc--cccccccc---cccccccccccccc-cccccccccccc
Confidence 7764 577777764 2345543211 12344554 34444432 33445666777765 55544 556677
Q ss_pred CC-----CCCCHHHHHHHHHHcCCEEEEecccccccccc----CC--cc---CCCC-CCcEEEEcCcCcCccCcEEEEEE
Q 018300 262 YP-----RDFDYPRMRQIADAVGALLMMDMAHISGLVAA----SV--VA---DPFK-YCDVVTTTTHKSLRGPRGGMIFF 326 (358)
Q Consensus 262 ~~-----~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~----g~--~~---~pl~-gaDiv~~S~hK~L~Gp~GG~I~~ 326 (358)
|- ...++++++++|++||+++++|.+ +|.... +. .| ..+. |+|+++||+.|-|+||+.|+|++
T Consensus 148 ~~i~GFt~~~~~~el~~la~~~~lp~i~Dlg--sG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQaGiI~G 225 (367)
T PF03841_consen 148 FRIQGFTGEVSLEELAELAKEHGLPVIVDLG--SGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQAGIIVG 225 (367)
T ss_dssp -------------HHHHHHHHHT--EEEE-T--THHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S-EEEEE
T ss_pred cccccccccccHHHHHHHHhhcCCcEEEECC--CCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCCeEEEEe
Confidence 62 257899999999999999999985 333321 11 12 2234 99999999999999999999999
Q ss_pred eCC
Q 018300 327 KKD 329 (358)
Q Consensus 327 ~~~ 329 (358)
+++
T Consensus 226 kk~ 228 (367)
T PF03841_consen 226 KKE 228 (367)
T ss_dssp EHH
T ss_pred CHH
Confidence 995
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=125.53 Aligned_cols=161 Identities=20% Similarity=0.251 Sum_probs=117.0
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEec--
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-- 229 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~-- 229 (358)
+++.+++.||+++. .+..+|| .||..++.++++|||.|++... .|.|... .+.++|. .++++
T Consensus 75 Aqe~aA~~fgAd~t-----yFvvNGTS~ank~vi~a~~~~GD~VLvdRN---~HKSi~~-----glilaGa--~Pvyl~p 139 (557)
T COG1982 75 AQELAARVFGADHT-----YFVVNGTSTANKAVINAVLTPGDKVLVDRN---CHKSIHH-----GLILAGA--TPVYLEP 139 (557)
T ss_pred HHHHHHHHhCCCce-----EEEECCccHHHHHHHHhhcCCCCEEEecCC---ccHHHHH-----HHHHcCC--ceEEecC
Confidence 56678999999985 3344565 5999999999999999999764 5555321 3446665 33332
Q ss_pred eecCCC---CCCCHHHHHHHhhhcC-C-eEEE-EcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccC-CC
Q 018300 230 RLDEST---GLVDYDMLEKTAILFR-P-KLII-AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD-PF 302 (358)
Q Consensus 230 ~~~~~~---~~iD~d~le~~i~~~~-~-klIi-~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~-pl 302 (358)
..|+.. +.|+.+.+++.+.+++ . |+++ .+++.+|...|.++|++.++++++++.+|.+|.+.....+..+. ..
T Consensus 140 ~~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~ 219 (557)
T COG1982 140 SRNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESAL 219 (557)
T ss_pred CCCccccccCCCCHHHHHHHHHhChhhheeEEEecCccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhh
Confidence 223322 3689999988776543 3 5554 46666799999999999999999999999999876655554443 23
Q ss_pred C-CCcEEEEcCcCcCccC-cEEEEEEeC
Q 018300 303 K-YCDVVTTTTHKSLRGP-RGGMIFFKK 328 (358)
Q Consensus 303 ~-gaDiv~~S~hK~L~Gp-~GG~I~~~~ 328 (358)
+ ++|+++.|+||.+++. ++.+|..++
T Consensus 220 ~~~~~~~tqS~HK~l~alSQaS~iHv~~ 247 (557)
T COG1982 220 NGGADFVTQSTHKLLAALSQASMIHVKD 247 (557)
T ss_pred hcCceEEEechhhhhhhhhhhHHHhhCC
Confidence 2 8999999999999876 456777765
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-11 Score=119.91 Aligned_cols=164 Identities=20% Similarity=0.190 Sum_probs=111.4
Q ss_pred HHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCC-CEEEecCCCCCcccccccccchhccccCCceEEEEecee
Q 018300 154 QKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (358)
Q Consensus 154 ~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~ 231 (358)
++.+++++|++++ +|.+++|+ +++..++.++++|| |+|+++++.+..+.. .+...|.. +.++++
T Consensus 66 r~aia~~~~~~~~----~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~~--------~~~~~g~~--v~~v~~ 131 (354)
T PRK04635 66 INAYSAYAGVAPE----QILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYAI--------SAETFNVG--VKALPL 131 (354)
T ss_pred HHHHHHHhCcCHH----HEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHH--------HHHHcCCE--EEEEec
Confidence 3456778899885 57777777 49999999999999 899998876554321 22345654 444555
Q ss_pred cCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHc-CCEEEEeccccccccccCCccCCCC-CC-c
Q 018300 232 DESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAV-GALLMMDMAHISGLVAASVVADPFK-YC-D 306 (358)
Q Consensus 232 ~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~-g~~livD~Ah~~Gl~~~g~~~~pl~-ga-D 306 (358)
++ ++.+|.+.+++ + .++|+|++..+++| ...+.+++.++++.. +++|++|++|. .+........... .- =
T Consensus 132 ~~-~~~~~~~~l~~-~--~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~-~~~~~~s~~~~~~~~~~~ 206 (354)
T PRK04635 132 TA-DYQLPLDYIEQ-L--DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYI-EFCPEYSVADLLASYPNL 206 (354)
T ss_pred CC-CCCCCHHHHHh-c--cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchH-hhccCcchHHHHhhCCCE
Confidence 53 46789988874 3 37899888777764 588999999988874 79999999975 3321110000011 11 1
Q ss_pred EEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 307 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 307 iv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+++.|++|++ +|.|-|+++.++ ++.+++..
T Consensus 207 iv~~S~SK~~~l~GlRlG~~i~~~------~~~~~l~~ 238 (354)
T PRK04635 207 VVLRTLSKAFALAGARCGFTLANE------ELIEILMR 238 (354)
T ss_pred EEEechHHHhhhhHHHHhhhhCCH------HHHHHHHh
Confidence 6788999996 577779999876 45555554
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-11 Score=119.02 Aligned_cols=167 Identities=15% Similarity=0.128 Sum_probs=112.0
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCC-CEEEecCCCCCcccccccccchhccccCCceEEEEece
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~ 230 (358)
.++++++.+|++++ +|.+++|+ +++..++.++++|| |+|+++++.|..+.. .+...|..+ +.++
T Consensus 62 l~~~~a~~~g~~~~----~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~~--------~~~~~G~~~--~~v~ 127 (351)
T PRK01688 62 VIENYAAYAGVKPE----QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSV--------SAETIGVEI--RTVP 127 (351)
T ss_pred HHHHHHHHhCCCHH----HEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHHH--------HHHHcCCEE--EEee
Confidence 45568889999875 57777776 49999999999997 899998876654321 234556644 4445
Q ss_pred ecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHc--CCEEEEeccccccccccCCccCCCC-CC
Q 018300 231 LDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK-YC 305 (358)
Q Consensus 231 ~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~--g~~livD~Ah~~Gl~~~g~~~~pl~-ga 305 (358)
+++ +..+|++++++.+ .++|+|++..+++| +..+.+++.++++.. +.+|++|+++. .+.........+. +.
T Consensus 128 ~~~-~~~~d~~~l~~~~--~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~-~f~~~~s~~~~~~~~~ 203 (351)
T PRK01688 128 TLD-NWQLDLPAIADNL--DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYI-EFCPQASLAGWLAEYP 203 (351)
T ss_pred cCC-CCCCCHHHHHHhc--cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchh-hcCCCCChHHHHhhCC
Confidence 553 4689999999876 37898888777764 577777766666542 68999999974 3321110000111 22
Q ss_pred c-EEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 306 D-VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 306 D-iv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
. +++.|++|++ +|.|.|++++++ ++.+++...
T Consensus 204 n~iv~rSfSK~~glaGlRiGy~i~~~------~~i~~l~~~ 238 (351)
T PRK01688 204 HLVILRTLSKAFALAGLRCGFTLANE------EVINLLLKV 238 (351)
T ss_pred CEEEEecchHhhcCHHHHHhHHhCCH------HHHHHHHhc
Confidence 2 7788999986 466779999876 455555543
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.7e-10 Score=111.86 Aligned_cols=196 Identities=16% Similarity=0.147 Sum_probs=113.6
Q ss_pred cHHHHHHHhhhhhcccC-CCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh----c
Q 018300 115 SRAVMEAVGSCLTNKYS-EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI----L 189 (358)
Q Consensus 115 s~~V~~al~~~l~~~~~-~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al----l 189 (358)
+|.|++|+...+.. +. .+..+.+.....+ ..+ .++++++++++. . .++++||+.|+..++..+ .
T Consensus 62 ~p~v~~A~~~~l~~-~g~~~~~~~~~~~~~~---~~~-~l~~~la~~~~~-~-----~~~~~sG~~a~~~ai~~~~~~~~ 130 (402)
T PRK07505 62 HPAIIEGAVDALKR-TGSLHLSSSRTRVRSQ---ILK-DLEEALSELFGA-S-----VLTFTSCSAAHLGILPLLASGHL 130 (402)
T ss_pred CHHHHHHHHHHHHH-hCCCCCCccchhhhhH---HHH-HHHHHHHHHhCC-C-----EEEECChHHHHHHHHHHHHhccc
Confidence 89999999887753 31 1111111111222 233 356678899987 3 366789999998887543 2
Q ss_pred cCCC-EEEecC-CCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCC
Q 018300 190 KPHD-RIMGLD-LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRD 265 (358)
Q Consensus 190 ~pGD-~Vl~~~-~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~ 265 (358)
.+|+ .|++.+ ..|++. . ........+. ++..++ ..|++++++.+.. +++++++..+++ |..
T Consensus 131 ~~~~~~vi~~~~~~H~s~---~---~~~~~~~~~~--~v~~~~------~~d~~~l~~~~~~-~~~~~vl~~p~~~~G~~ 195 (402)
T PRK07505 131 TGGVPPHMVFDKNAHASL---N---ILKGICADET--EVETID------HNDLDALEDICKT-NKTVAYVADGVYSMGGI 195 (402)
T ss_pred CCCCCCEEEEchhhhHhH---H---hhhhhhhcCC--eEEEeC------CCCHHHHHHHHhc-CCCEEEEEecccccCCc
Confidence 2343 244443 333321 1 0001111122 333332 2488999988754 456665544443 568
Q ss_pred CCHHHHHHHHHHcCCEEEEeccccccccc-cCC-cc---CCC--CCCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHH
Q 018300 266 FDYPRMRQIADAVGALLMMDMAHISGLVA-ASV-VA---DPF--KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELES 338 (358)
Q Consensus 266 ~dl~~I~~ia~e~g~~livD~Ah~~Gl~~-~g~-~~---~pl--~gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~ 338 (358)
.++++|.++|+++|++|++|++|+.+... .+. .. ... ....+++.|+.|.++++ ||+++..++ ++.+
T Consensus 196 ~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~-Gg~~~~~~~-----~~~~ 269 (402)
T PRK07505 196 APVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS-GGVIMLGDA-----EQIE 269 (402)
T ss_pred CCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc-CeEEEeCCH-----HHHH
Confidence 89999999999999999999999754321 111 10 111 12347778999998765 788776444 5666
Q ss_pred HHhh
Q 018300 339 AINN 342 (358)
Q Consensus 339 ~i~~ 342 (358)
.+..
T Consensus 270 ~~~~ 273 (402)
T PRK07505 270 LILR 273 (402)
T ss_pred HHHH
Confidence 6654
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-10 Score=113.52 Aligned_cols=193 Identities=17% Similarity=0.158 Sum_probs=126.2
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc-C
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-P 191 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~-p 191 (358)
.+|+..++||.. |. ..|+|.+.+.+||+. ++++||.++. +.+.+|..++..++..+++ |
T Consensus 54 apS~~m~aAM~~--------GD---D~Y~gdpSv~~Lee~----vael~G~E~a-----lpthqGRgaE~Il~~~~~~~~ 113 (467)
T TIGR02617 54 AVTQSMQAAMMR--------GD---EAYSGSRSYYALAES----VKNIFGYQYT-----IPTHQGRGAEQIYIPVLIKKR 113 (467)
T ss_pred CCCHHHHHHHHc--------CC---cccccCchHHHHHHH----HHHHhCCceE-----EECCCCchHHHHHHHhhcccc
Confidence 478888888863 21 235666666677765 6789999872 6667999999999999988 8
Q ss_pred CCEEEecCC----CCCcccccccccchhccccCCceEEEEece------e-cCCCCCCCHHHHHHHhhhcC---CeEEEE
Q 018300 192 HDRIMGLDL----PHGGHLSHGFMTPKRRVSGTSIYFESMPYR------L-DESTGLVDYDMLEKTAILFR---PKLIIA 257 (358)
Q Consensus 192 GD~Vl~~~~----~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~------~-~~~~~~iD~d~le~~i~~~~---~klIi~ 257 (358)
||++.+-.. .|.-|+..+ ...+.+.|.....++.+ + .+..|.+|+++|++.++... .-.+.+
T Consensus 114 g~e~g~~~~~~~v~hn~~fett----~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~ 189 (467)
T TIGR02617 114 EQEKGLDRSKMVAFSNYFFDTT----QGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVA 189 (467)
T ss_pred cccccccccccccceEEEEecc----hHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeee
Confidence 998885432 233333211 11234556533322111 1 12347899999999987532 222222
Q ss_pred ---cCCCCCCCCC---HHHHHHHHHHcCCEEEEecccccc-cc--------ccCCccCC-----CCCCcEEEEcCcCcCc
Q 018300 258 ---GASAYPRDFD---YPRMRQIADAVGALLMMDMAHISG-LV--------AASVVADP-----FKYCDVVTTTTHKSLR 317 (358)
Q Consensus 258 ---~~s~~~~~~d---l~~I~~ia~e~g~~livD~Ah~~G-l~--------~~g~~~~p-----l~gaDiv~~S~hK~L~ 317 (358)
..+..|++++ ++++.++|++||+.++.|+|-.+- .. +.+.-+.. ++++|.+++|+.|-+.
T Consensus 190 tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglg 269 (467)
T TIGR02617 190 TITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAM 269 (467)
T ss_pred eEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCC
Confidence 2223455554 677888999999999999986542 21 22221111 2489999999999999
Q ss_pred cCcEEEEEEeCC
Q 018300 318 GPRGGMIFFKKD 329 (358)
Q Consensus 318 Gp~GG~I~~~~~ 329 (358)
.|-||+|+++++
T Consensus 270 ApvGg~Lag~d~ 281 (467)
T TIGR02617 270 VPMGGLLCFKDD 281 (467)
T ss_pred CcccceEEecch
Confidence 999999999986
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.4e-10 Score=110.89 Aligned_cols=198 Identities=13% Similarity=0.123 Sum_probs=117.6
Q ss_pred ccccccCC--CCcHHHHHHHhhhhhcccC----CCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH
Q 018300 105 LELIASEN--FTSRAVMEAVGSCLTNKYS----EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 178 (358)
Q Consensus 105 i~lias~n--~~s~~V~~al~~~l~~~~~----~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt 178 (358)
++|-..++ .+++.|.+++...+.+... .+|.. ..|.+ .+++.+.+++.+ .+++++ +|.+++|+
T Consensus 36 i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p---~~g~~---~lr~aia~~~~~-~~~~~d----~I~it~Ga 104 (402)
T TIGR03542 36 IRLGIGDTTQPLPASVIEAFHNAVDELASEETFRGYGP---EQGYP---FLREAIAENDYR-GRIDPE----EIFISDGA 104 (402)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhcccccccccCCCC---CCCCH---HHHHHHHHHHHh-cCCCHH----HEEECCCc
Confidence 44443333 3688899998877654211 12311 12333 344443332211 156654 56777776
Q ss_pred H-HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCc---------eEEEEeceecCCC-CCCCHHHHHHHh
Q 018300 179 P-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI---------YFESMPYRLDEST-GLVDYDMLEKTA 247 (358)
Q Consensus 179 ~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~---------~~~~~~~~~~~~~-~~iD~d~le~~i 247 (358)
. |+.. +..++.+||+|++.+|.|.++.. .....|. +.++.+++.++++ ..+|+++
T Consensus 105 ~~al~~-l~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----- 170 (402)
T TIGR03542 105 KCDVFR-LQSLFGSDNTVAVQDPVYPAYVD--------SNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE----- 170 (402)
T ss_pred HHHHHH-HHHhcCCCCEEEEeCCCCcchHH--------HHHHcCCccccccccccceEEEeecchhhCCCCCccc-----
Confidence 5 6665 45677899999999987765532 1223343 0134444454322 2344321
Q ss_pred hhcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCC---CCC---cEEEEcCcCcC
Q 018300 248 ILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYC---DVVTTTTHKSL 316 (358)
Q Consensus 248 ~~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~ga---Div~~S~hK~L 316 (358)
..++|+|++..+++| ...+ +++|.++|+++|++|++|+++. .+...+..+.++ +.. -+++.|++|.+
T Consensus 171 -~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~-~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~ 248 (402)
T TIGR03542 171 -EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYS-AFISDPSLPHSIFEIPGAKECAIEFRSFSKTA 248 (402)
T ss_pred -cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhh-hhccCCCCCcchhhCCCCcccEEEEecCcccc
Confidence 136788887666665 4555 7889999999999999999976 444333222222 221 26688999987
Q ss_pred --ccCcEEEEEEeCC
Q 018300 317 --RGPRGGMIFFKKD 329 (358)
Q Consensus 317 --~Gp~GG~I~~~~~ 329 (358)
+|.|-|+++++++
T Consensus 249 g~pGlRiG~~i~~~~ 263 (402)
T TIGR03542 249 GFTGVRLGWTVVPKE 263 (402)
T ss_pred CCCCcceEEEEecHH
Confidence 6778899999764
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.3e-11 Score=113.84 Aligned_cols=158 Identities=20% Similarity=0.222 Sum_probs=102.6
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~ 231 (358)
.|+++++++|.+++ +|.+++|+. ++..+ ..++.+| +|++.++.|.++.. .....|. ++.+++
T Consensus 52 lr~~la~~~~~~~~----~i~~t~G~~~~i~~~-~~~l~~g-~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~- 114 (330)
T TIGR01140 52 LRAAAAAYYGLPAA----SVLPVNGAQEAIYLL-PRLLAPG-RVLVLAPTYSEYAR--------AWRAAGH--EVVELP- 114 (330)
T ss_pred HHHHHHHHhCCChh----hEEECCCHHHHHHHH-HHHhCCC-eEEEeCCCcHHHHH--------HHHHcCC--EEEEeC-
Confidence 45668888998754 567788876 55554 4457888 68887776654422 2234454 444432
Q ss_pred cCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--C
Q 018300 232 DESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--Y 304 (358)
Q Consensus 232 ~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--g 304 (358)
|++++++.+. ++++|++..+++| ...+ +++|+++|+++|+++++|++|. ++..........+ .
T Consensus 115 -------d~~~l~~~~~--~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~ 184 (330)
T TIGR01140 115 -------DLDRLPAALE--ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFI-DFTPDASLAPQAARFP 184 (330)
T ss_pred -------CHHHHHhhcc--cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECccc-ccCCccchhhHhccCC
Confidence 7899988873 5677766555554 5667 6677888899999999999986 3332111101011 3
Q ss_pred CcEEEEcCcCcCc--cCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 305 CDVVTTTTHKSLR--GPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 305 aDiv~~S~hK~L~--Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
.++++.|++|+++ |.|.|+++.++ ++.+++...
T Consensus 185 ~~i~~~S~SK~~g~~G~R~G~i~~~~------~~~~~l~~~ 219 (330)
T TIGR01140 185 GLVVLRSLTKFFGLAGLRLGFVVAHP------ALLARLREA 219 (330)
T ss_pred CEEEEEecchhhcCchhhhhheeCCH------HHHHHHHhc
Confidence 4589999999974 44569999877 455655543
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=113.44 Aligned_cols=205 Identities=13% Similarity=0.059 Sum_probs=130.4
Q ss_pred hhcccccccCCCCcHHHHHHHhhhhhcccCCCCC-CCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHH
Q 018300 102 FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLP-GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (358)
Q Consensus 102 ~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~p-g~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A 180 (358)
++.+++.|++..+|+.|++++...+.+....|.. -...+.+.++.+.+++ +++.++++|+.+.+ +.+.+...|||.+
T Consensus 3 ~~~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~-~~~~Lr~Ll~~P~~-y~Vlfl~GggT~~ 80 (364)
T PRK12462 3 RNQLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQ-AEADLRDLLGIPDE-YGVVFLQGGSSLQ 80 (364)
T ss_pred cccceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHH-HHHHHHHHhCCCCC-CeEEEEeccHHHH
Confidence 4577899999999999999999888775543321 1123445666666665 78899999999542 3355555678889
Q ss_pred HHHHHHHhccCCCEEE-ecCCCCCcccccccccchhccccCCceEEEEecee-cCCCCCCCHHHHHHHhhhcCCeEEEE-
Q 018300 181 NFEVYTAILKPHDRIM-GLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAILFRPKLIIA- 257 (358)
Q Consensus 181 ~~~a~~all~pGD~Vl-~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~iD~d~le~~i~~~~~klIi~- 257 (358)
+.++..+++++||+++ +.. +|+++..+.. .+...| .++.+...- ...+..++.++++. . .+.+.|.+
T Consensus 81 ~ea~~~Nll~~g~~~~~~~~---tG~fg~r~~~---ea~~~g-~v~~~~~~~~~~~~~~p~~~~~~~--~-~d~~~v~~t 150 (364)
T PRK12462 81 FSMIPMNFSRPGAAAPEYVT---TGYWSRKAIG---EASRVA-AMRVVWDGAASGYRTLPSLAELDW--D-ARAPFRHYV 150 (364)
T ss_pred HHHHHHHcCCCCCcEEEEEe---CCHHHHHHHH---HHHhcC-CceEecCcCCCCCCcCCCHHHhcc--C-CCCcEEEEc
Confidence 9999999999999765 333 4776654321 222233 233332100 11123566666521 1 14566654
Q ss_pred -cCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 258 -GASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 258 -~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+.+.+|...+ ++.+.+++++++|++-.+|. .|.+++..|++.++.+|+|+ |.| ++++.+++
T Consensus 151 ~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s-----~pid~~~~dvi~agsQKnlg-P~Gltvvivs~~ 213 (364)
T PRK12462 151 SNETVEGLQFP-----DAAGLPDSPLIADMSSDFMS-----RPFDVEAYGMVYAHAQKNLG-PAGVTVAIIRRA 213 (364)
T ss_pred cCCCCceEecC-----cccccCCCeEEEEcCchhhC-----CCCChHHccEEEeeccccCC-CCceEEEEECHH
Confidence 3455666654 33334689999999755432 23334456999999999996 888 67777763
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.8e-11 Score=110.24 Aligned_cols=189 Identities=21% Similarity=0.249 Sum_probs=129.1
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-ccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~pG 192 (358)
+..+.+++|.+..... .-|+-.+...+||+. .+++||-+.. ++++|||.+|..+++.- -+||
T Consensus 34 PTdeMr~am~eA~vgD--------dVyGeD~tt~rLE~~----vA~l~GKEAg-----LFv~SGTmgNllaIm~Hc~~rg 96 (384)
T KOG1368|consen 34 PTDEMRRAMAEASVGD--------DVYGEDPTTNRLEQR----VAELFGKEAG-----LFVPSGTMGNLLAIMVHCHQRG 96 (384)
T ss_pred ChHHHHHHHhhcccCc--------ccccCCccHHHHHHH----HHHHhCccce-----eeecccccccHHHHHHHhcCCC
Confidence 4667788887543322 234444455567764 7889999874 77899999999998875 5699
Q ss_pred CEEEecCCCCCcccccccccchhc-cccCCceEEEEeceecCCCCCCCHHHHHHHhhhc-------CCeEEEEcCCC--C
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRR-VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-------RPKLIIAGASA--Y 262 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~-------~~klIi~~~s~--~ 262 (358)
.+|++-+. +|+ |.| .... ..+.|.. +.++. +++++.+|++++|+.+... .++||.++.+. .
T Consensus 97 ~eii~gd~---~HI-~~~--E~gg~s~l~gv~--~~tv~-~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~ 167 (384)
T KOG1368|consen 97 SEIIVGDR---AHI-HRY--EQGGISQLAGVH--VRTVK-NENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNC 167 (384)
T ss_pred ceEEeccc---hhe-eeh--hccChhhhccce--eEeee-eCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeecccccc
Confidence 99998664 332 222 1112 2345543 33433 3356799999999998643 25889886543 3
Q ss_pred C-CCCCH---HHHHHHHHHcCCEEEEeccccccccc-cCCccCCCC----CCcEEEEcCcCcCccCcEEEEEEeCCCC
Q 018300 263 P-RDFDY---PRMRQIADAVGALLMMDMAHISGLVA-ASVVADPFK----YCDVVTTTTHKSLRGPRGGMIFFKKDPV 331 (358)
Q Consensus 263 ~-~~~dl---~~I~~ia~e~g~~livD~Ah~~Gl~~-~g~~~~pl~----gaDiv~~S~hK~L~Gp~GG~I~~~~~~~ 331 (358)
| ...++ +++.++|+++|+.|++|+|....... .| .|+. .+|-+...++|.|+.|-|.+|++++++|
T Consensus 168 Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasg---V~vk~i~~~fDSVsiCLSKglgAPVGSViVG~k~FI 242 (384)
T KOG1368|consen 168 GGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASG---VPVKKICSAFDSVSICLSKGLGAPVGSVIVGSKDFI 242 (384)
T ss_pred CceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcC---CCHHHHHHhhhhhhhhhhccCCCCcccEEEccHHHH
Confidence 4 55664 56778999999999999986543221 12 2332 6788888999999999999999999654
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-10 Score=115.62 Aligned_cols=190 Identities=12% Similarity=0.103 Sum_probs=124.2
Q ss_pred ccccCCCCcHH-HHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHH
Q 018300 107 LIASENFTSRA-VMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (358)
Q Consensus 107 lias~n~~s~~-V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~ 185 (358)
+.+++....|. .++++.+.+. .+.+.+.++.+.+++ +.+.++++|+.+. ++.+.+...|||.++.+++
T Consensus 7 f~~gp~~~~~~~~~~~~~~~~~---------~~~HRs~~F~~i~~e-~~~~L~~l~~~~~-~~~v~~l~GsGT~a~Eaa~ 75 (374)
T TIGR01365 7 FSSGPCAKRPGWSIEELKNAPL---------GRSHRSKLGKEKLAE-AIKKTREMLGVPA-DYLIGIVPASDTGAVEMAL 75 (374)
T ss_pred cCCCccCCCchhhHHHHhhhhc---------ccCcCCHHHHHHHHH-HHHHHHHHhCCCC-CcEEEEECCchHHHHHHHH
Confidence 44566666666 6666654221 122345566666655 7888999999853 2335566778999999999
Q ss_pred HHhc-cCCCEEEecCCCCCcccccccccchhccccCCc-eEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEE-EcCCCC
Q 018300 186 TAIL-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-YFESMPYRLDESTGLVDYDMLEKTAILFRPKLII-AGASAY 262 (358)
Q Consensus 186 ~all-~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi-~~~s~~ 262 (358)
.+++ ++||+|++. |.++..+.. +.+...|. .++.+. .+ .+..+|+++++. . ..+.+ .+.+++
T Consensus 76 ~nl~~~~g~~vLv~-----g~FG~r~~~--eia~~~g~~~v~~l~--~~-~g~~~~~~~ve~--~---~~v~~vhnETST 140 (374)
T TIGR01365 76 WSMLGCRGVDVLAW-----ESFGKGWVT--DVTKQLKLPDVRVLE--AE-YGKLPDLKKVDF--K---NDVVFTWNGTTS 140 (374)
T ss_pred HHcCCCCCCeEEEE-----CHHHHHHHH--HHHHhcCCCCcEEEc--CC-CCCCCCHHHcCC--C---CCEEEecCCCch
Confidence 9998 589999874 344443310 12233555 244443 22 345889999873 1 22333 355677
Q ss_pred CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 263 ~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
|...|++++.... +++++++|+.-++|.. |.+++++|++++|.+|+|.+|.| ++++.+++
T Consensus 141 Gv~npv~~i~~~~--~~~lliVDavSs~g~~-----~l~~d~iDv~~tgsQK~L~~ppGls~v~vs~~ 201 (374)
T TIGR01365 141 GVRVPNGDFIPAD--REGLTICDATSAAFAQ-----DLDYHKLDVVTFSWQKVLGGEGAHGMLILSPR 201 (374)
T ss_pred heecccccccccc--CCCcEEEEccchhcCC-----CCChhHCcEEEEechhccCCCCceEEEEECHH
Confidence 8888887665322 4899999998665532 33344899999999999999999 68887774
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-10 Score=112.46 Aligned_cols=190 Identities=16% Similarity=0.114 Sum_probs=112.9
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh----c
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI----L 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al----l 189 (358)
-+|.|.+++...+......+ . .+ .++...+ ..++++++++.+. .++++||++|+..++.++ .
T Consensus 48 ~~p~v~~a~~~~~~~~~~~~---~-~~-~~~~~~~----la~~l~~~~~~~~-----v~~~~sGseA~~~al~~ar~~~~ 113 (389)
T PRK01278 48 AHPHLVEALKEQAEKLWHVS---N-LY-RIPEQER----LAERLVENSFADK-----VFFTNSGAEAVECAIKTARRYHY 113 (389)
T ss_pred CCHHHHHHHHHHHHhcCccc---c-cc-CChHHHH----HHHHHHhhCCCCE-----EEEcCCcHHHHHHHHHHHHHHHH
Confidence 47888888877765322111 1 11 1232222 3455777765443 366789999999998765 5
Q ss_pred cCCC----EEEecCCCCCcccccccccchhccccCCceEEEEec-eecCC---CCCCCHHHHHHHhhhcCCeEEEEcCCC
Q 018300 190 KPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDES---TGLVDYDMLEKTAILFRPKLIIAGASA 261 (358)
Q Consensus 190 ~pGD----~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~-~~~~~---~~~iD~d~le~~i~~~~~klIi~~~s~ 261 (358)
++|| +|++.+..+.|+..- .....+.......+ +..++ -...|++++++.++. ++++|++++.+
T Consensus 114 ~~G~~~r~~vi~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~avivep~~ 185 (389)
T PRK01278 114 GKGHPERYRIITFEGAFHGRTLA-------TIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITP-NTAAILIEPIQ 185 (389)
T ss_pred hcCCCCCCEEEEECCCcCCCcHH-------HHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCC-CeEEEEEeccc
Confidence 6777 899887654443110 11112210000001 11110 012689999998864 78899888654
Q ss_pred CC---C---CCCHHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcCcCcC-ccCcEEEEEEeC
Q 018300 262 YP---R---DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSL-RGPRGGMIFFKK 328 (358)
Q Consensus 262 ~~---~---~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~hK~L-~Gp~GG~I~~~~ 328 (358)
.+ . ..++++|.++|++||+++|+|++|. |+...|.. . ..++ ..|++ ++.|.| +|.+.|++++++
T Consensus 186 ~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~ 259 (389)
T PRK01278 186 GEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQC-GMGRTGKLFAHEWAGVTPDIM--AVAKGIGGGFPLGACLATE 259 (389)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCcceeecccCCCCCEE--EEehhccCCcceEEEEEcH
Confidence 32 1 2258999999999999999999987 65433321 1 1112 34665 567998 456788888876
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.6e-10 Score=108.14 Aligned_cols=176 Identities=16% Similarity=0.067 Sum_probs=112.1
Q ss_pred ccccccCCC-CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HHH
Q 018300 105 LELIASENF-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANF 182 (358)
Q Consensus 105 i~lias~n~-~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~ 182 (358)
++|-..+|+ .++.+.+++...+.. ..+||. ...+ ++++++++|. +|++++|+. |+.
T Consensus 11 i~l~~~~np~~p~~~~~a~~~~~~~--~~~yp~---------~~~l----~~~ia~~~~~-------~I~vt~G~~~al~ 68 (311)
T PRK08354 11 IDFSASVNPYPPEWLDEMFERAKEI--SGRYTY---------YEWL----EEEFSKLFGE-------PIVITAGITEALY 68 (311)
T ss_pred eEecCCCCCCCCHHHHHHHHHHHHH--hhcCCC---------hHHH----HHHHHHHHCC-------CEEECCCHHHHHH
Confidence 344344443 467788888765432 124542 1123 4457778773 255677764 777
Q ss_pred HHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC
Q 018300 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262 (358)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~ 262 (358)
.++ .++.+||+|++.+|.|.++.. .+...|. ++..+ .+|++.+++.++ +++++++..++|
T Consensus 69 ~~~-~~~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~~~~~-------~~d~~~l~~~~~--~~~~vi~~~P~N 128 (311)
T PRK08354 69 LIG-ILALRDRKVIIPRHTYGEYER--------VARFFAA--RIIKG-------PNDPEKLEELVE--RNSVVFFCNPNN 128 (311)
T ss_pred HHH-HhhCCCCeEEEeCCCcHHHHH--------HHHHcCC--EEeec-------CCCHHHHHHhhc--CCCEEEEecCCC
Confidence 666 445599999999987766532 2344555 33332 357889988765 456666655666
Q ss_pred CC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCcC--ccCcEEEEEE
Q 018300 263 PR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSL--RGPRGGMIFF 326 (358)
Q Consensus 263 ~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L--~Gp~GG~I~~ 326 (358)
|+ ..+ +++|.++|+++|+++++|+++. ++...+. ... .--+++.|++|++ +|.|-|++++
T Consensus 129 PTG~~~~~~~l~~l~~~a~~~~~~li~De~y~-~f~~~~~---~~~~~~vi~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 129 PDGKFYNFKELKPLLDAVEDRNALLILDEAFI-DFVKKPE---SPEGENIIKLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred CCCCccCHHHHHHHHHHhhhcCcEEEEeCcch-hcccccc---ccCCCcEEEEeccHhhcCCccceeeeeee
Confidence 54 444 6777788899999999999974 4443321 112 2237789999997 6888899987
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-09 Score=108.93 Aligned_cols=146 Identities=16% Similarity=0.133 Sum_probs=94.1
Q ss_pred eEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhcc-ccCCceEEEEeceecCCCCCCCHHHHHHHhh
Q 018300 171 NVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRV-SGTSIYFESMPYRLDESTGLVDYDMLEKTAI 248 (358)
Q Consensus 171 ~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~ 248 (358)
+|++++|+ +|+..++.++++|||+|++.+|.|..+.. .+ ...|. +++++++..+++.+|++++++.++
T Consensus 71 ~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~~g~--~vv~v~~~~~~~~~d~~~l~~~~~ 140 (388)
T PRK08637 71 LPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKL--------TFNTRRGA--EIVTYPIFDEDGGFDTDALKEALQ 140 (388)
T ss_pred eeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHH--------HHHHhcCC--EEEEecccCCCCcCCHHHHHHHHH
Confidence 45566665 58989999999999999999987665432 11 13455 455555532345689999998875
Q ss_pred --hcCC-eEEEEcCCCCCC--CCC---HHHHHHHHHH-----cCCEEEEeccccccccccCCccCC-C----C-CCcE--
Q 018300 249 --LFRP-KLIIAGASAYPR--DFD---YPRMRQIADA-----VGALLMMDMAHISGLVAASVVADP-F----K-YCDV-- 307 (358)
Q Consensus 249 --~~~~-klIi~~~s~~~~--~~d---l~~I~~ia~e-----~g~~livD~Ah~~Gl~~~g~~~~p-l----~-gaDi-- 307 (358)
..+. +++++..++||+ ..+ +++|+++|++ ++++|++|.++. ++.+.+....+ + + .-.+
T Consensus 141 ~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~-~l~~~~~~~~~~~~~~~~~~~~vi~ 219 (388)
T PRK08637 141 AAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYF-GLFYEDSYKESLFAALANLHSNILA 219 (388)
T ss_pred hhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccch-hcccCCccchhhHHHhhcccccceE
Confidence 1233 456666566654 444 6677777765 899999999865 55544321111 1 1 1122
Q ss_pred -EEEcCcCcC--ccCcEEEEEEe
Q 018300 308 -VTTTTHKSL--RGPRGGMIFFK 327 (358)
Q Consensus 308 -v~~S~hK~L--~Gp~GG~I~~~ 327 (358)
.+.|++|.+ +|.|.|+++..
T Consensus 220 i~~~s~SK~~~~pGlRlG~~~~~ 242 (388)
T PRK08637 220 VKLDGATKEEFVWGFRVGFITFG 242 (388)
T ss_pred EEeccccccCCCcccceEEEEEc
Confidence 234899964 78889999864
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-10 Score=112.39 Aligned_cols=200 Identities=18% Similarity=0.099 Sum_probs=119.6
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~p 191 (358)
.+|.|.+++.+.+... . .++.. ++..+ ....++++++++++.+.+ ..++++||++|+..++..+ ..+
T Consensus 53 ~~p~v~~a~~~~~~~~-~-~~~~~--~~~~~----~~~~l~~~l~~~~~~~~~---~v~~~~sgsea~~~al~~~~~~~~ 121 (413)
T cd00610 53 NHPEVVEALKEQLAKL-T-HFSLG--FFYNE----PAVELAELLLALTPEGLD---KVFFVNSGTEAVEAALKLARAYTG 121 (413)
T ss_pred CCHHHHHHHHHHHHhC-c-CccCc--ccCCH----HHHHHHHHHHHhCCCCCC---EEEEcCcHHHHHHHHHHHHHHHcC
Confidence 5788999988776421 1 11110 01122 334456678899996543 2356779999999999876 468
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCc----------eEEEEeceecC-----CCCCCCHHHHHHHhhhc--CCeE
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI----------YFESMPYRLDE-----STGLVDYDMLEKTAILF--RPKL 254 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~----------~~~~~~~~~~~-----~~~~iD~d~le~~i~~~--~~kl 254 (358)
+|+|++.+..+.|+... .+...+. ..++..++.++ +....|++++++.++.+ ++++
T Consensus 122 ~~~ii~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 194 (413)
T cd00610 122 RKKIISFEGAYHGRTLG-------ALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAA 194 (413)
T ss_pred CCeEEEECCCcCCccHH-------HHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEE
Confidence 99999988655443210 0111110 01122333321 01234889999888652 4667
Q ss_pred EEEcCCC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcCcCcCcc-CcEEEE
Q 018300 255 IIAGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG-PRGGMI 324 (358)
Q Consensus 255 Ii~~~s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~hK~L~G-p~GG~I 324 (358)
|++++.. .|...+ +++|.++|+++|+++++|++|+ |+...+.. . ...+ ..|++++ .|+|++ .+.|++
T Consensus 195 vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-g~g~~g~~~~~~~~~~~~d~~t~--sK~l~~g~~~g~~ 271 (413)
T cd00610 195 VIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQT-GFGRTGKMFAFEHFGVEPDIVTL--GKGLGGGLPLGAV 271 (413)
T ss_pred EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCcchhhHhhcCCCCCeEEE--cccccCccccEEE
Confidence 7776533 244455 9999999999999999999987 44222211 1 1112 3577654 599864 456888
Q ss_pred EEeCCCCchhHHHHHH
Q 018300 325 FFKKDPVLGVELESAI 340 (358)
Q Consensus 325 ~~~~~~~~~~~~~~~i 340 (358)
++++ ++.+.+
T Consensus 272 ~~~~------~~~~~~ 281 (413)
T cd00610 272 LGRE------EIMDAF 281 (413)
T ss_pred EEcH------HHHHhh
Confidence 8776 566654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-09 Score=107.10 Aligned_cols=196 Identities=13% Similarity=0.118 Sum_probs=120.6
Q ss_pred hcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-
Q 018300 103 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP- 179 (358)
Q Consensus 103 ~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~- 179 (358)
..+++--.+| .+++.+++++...+... .+||.. .|.+ + .|+.+++++|++++ +|.+++|+.
T Consensus 23 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~~---~g~~---~----lr~aia~~~~~~~~----~I~it~Ga~~ 86 (349)
T PRK07908 23 GLLDFAVNVRHDTPPEWLRERLAARLGDL--AAYPST---EDER---R----ARAAVAARHGRTPD----EVLLLAGAAE 86 (349)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHhhHh--hcCCCc---cchH---H----HHHHHHHHhCcChh----hEEECCCHHH
Confidence 4455544454 36888999988765432 234431 1221 2 45567888898874 466677664
Q ss_pred HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC
Q 018300 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (358)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~ 259 (358)
|+..++. ++||| +++..+.+..+. ..+...|. +++.++++++ +.+|.++++ .++|++++..
T Consensus 87 al~~~~~--l~~~~-viv~~P~y~~~~--------~~~~~~G~--~i~~v~~~~~-~~~d~~~l~-----~~~~~i~l~n 147 (349)
T PRK07908 87 GFALLAR--LRPRR-AAVVHPSFTEPE--------AALRAAGI--PVHRVVLDPP-FRLDPAAVP-----DDADLVVIGN 147 (349)
T ss_pred HHHHHHh--cCCCe-EEEeCCCChHHH--------HHHHHcCC--EEEeeccCcc-cCcChhHhc-----cCCCEEEEcC
Confidence 8877776 57765 445555443321 12345565 4555556533 567887542 2678888765
Q ss_pred CCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCC--CCCCc-EEEEcCcCcC--ccCcEEEEEEeCCCCc
Q 018300 260 SAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP--FKYCD-VVTTTTHKSL--RGPRGGMIFFKKDPVL 332 (358)
Q Consensus 260 s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p--l~gaD-iv~~S~hK~L--~Gp~GG~I~~~~~~~~ 332 (358)
+++ |...+.++|.++|++ +.++++|++|. .+.. +..++. .+..+ +++.|++|++ +|.|.|+++.++
T Consensus 148 p~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~-~~~~-~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~---- 220 (349)
T PRK07908 148 PTNPTSVLHPAEQLLALRRP-GRILVVDEAFA-DAVP-GEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGAP---- 220 (349)
T ss_pred CCCCCCCCcCHHHHHHHHhc-CCEEEEECcch-hhcc-CCccccccccCCCEEEEeecccccCCccceeeeeecCH----
Confidence 555 457889999999975 78899999975 2222 221111 12223 5667999976 688899999876
Q ss_pred hhHHHHHHhh
Q 018300 333 GVELESAINN 342 (358)
Q Consensus 333 ~~~~~~~i~~ 342 (358)
++.+++..
T Consensus 221 --~~~~~~~~ 228 (349)
T PRK07908 221 --DVLARLTR 228 (349)
T ss_pred --HHHHHHHh
Confidence 45555554
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.4e-10 Score=108.97 Aligned_cols=206 Identities=23% Similarity=0.255 Sum_probs=137.1
Q ss_pred cccccccCCCC--cHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC-CCCCCCcceEEeCCCHH-
Q 018300 104 SLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLSGSP- 179 (358)
Q Consensus 104 ~i~lias~n~~--s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg-~~~~~~~v~V~~~SGt~- 179 (358)
-+.|-+-||+. |+.+.+++...+.. . .-||.. . ..++ ++.+++.+| .+.+ +|....|+.
T Consensus 24 ~i~LssNenP~gp~~~~~~~~~~~~~~-~-~rYPd~------~-~~~l----~~a~a~~~~~~~~~----~V~~gnGsde 86 (356)
T COG0079 24 IIKLSSNENPYGPPPKVIEAIRAALDK-L-NRYPDP------D-YREL----RAALAEYYGVVDPE----NVLVGNGSDE 86 (356)
T ss_pred ceeecCCCCCCCCCHHHHHHHHHHHHh-h-ccCCCC------c-HHHH----HHHHHHHhCCCCcc----eEEEcCChHH
Confidence 35565667765 57788888765531 1 124431 1 1233 445788899 6653 577788875
Q ss_pred HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC
Q 018300 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (358)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~ 259 (358)
.+..++.+++.|||+|+++.+.++-|.. .+...|. +++.++.++ ..+|++.+.+.+.+ ++++|++..
T Consensus 87 ~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~--------~a~~~g~--~~~~v~~~~--~~~d~~~~~~~~~~-~~~lv~i~n 153 (356)
T COG0079 87 LIELLVRAFVEPGDTVLIPEPTFSMYEI--------AAQLAGA--EVVKVPLKE--FRLDLDAILAAIRD-KTKLVFLCN 153 (356)
T ss_pred HHHHHHHHhhcCCCEEEEcCCChHHHHH--------HHHhcCC--eEEEecccc--cccCHHHHHHhhhc-CCCEEEEeC
Confidence 8888889999999999999887655422 2245565 444444553 78999999988876 799998887
Q ss_pred CCCC--CCCCHHHHHHHHHHc--CCEEEEeccccccccccCCccCCCCCCc--EEEEcCcCcC--ccCcEEEEEEeCCCC
Q 018300 260 SAYP--RDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFKYCD--VVTTTTHKSL--RGPRGGMIFFKKDPV 331 (358)
Q Consensus 260 s~~~--~~~dl~~I~~ia~e~--g~~livD~Ah~~Gl~~~g~~~~pl~gaD--iv~~S~hK~L--~Gp~GG~I~~~~~~~ 331 (358)
+|+| +..+.++|.++++.. +.+|++|+|+. .+...... ..+...+ +++=|++|.+ +|-|-|+.+.++
T Consensus 154 PNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~-eF~~~~~~-~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~--- 228 (356)
T COG0079 154 PNNPTGTLLPREELRALLEALPEGGLVVIDEAYI-EFSPESSL-ELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANP--- 228 (356)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchh-hcCCchhh-hhccCCCCEEEEEecHHhhhcchhceeeccCCH---
Confidence 8876 467777777777654 88999999954 33321000 1111233 6677999974 788889988887
Q ss_pred chhHHHHHHhhccCCc
Q 018300 332 LGVELESAINNAVFPG 347 (358)
Q Consensus 332 ~~~~~~~~i~~~~f~g 347 (358)
++.+.++....|.
T Consensus 229 ---~~i~~l~~vr~p~ 241 (356)
T COG0079 229 ---ELIAALNKVRPPF 241 (356)
T ss_pred ---HHHHHHHHhcCCC
Confidence 6777777765544
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-09 Score=108.37 Aligned_cols=185 Identities=15% Similarity=0.078 Sum_probs=113.1
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc---
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~--- 190 (358)
-.|.|.+++.+.+.. +..+.+ .+. .+...++| ++++++++.+. .+.++||++|+..++..+..
T Consensus 58 ~~~~i~~a~~~~~~~-~~~~~~---~~~-~~~~~~l~----~~l~~~~~~~~-----~~~~~SGs~A~e~al~~a~~~~~ 123 (401)
T PRK00854 58 CHPKILAAMVEQAGR-LTLTSR---AFR-NDQLAPLY----EELAALTGSHK-----VLPMNSGAEAVETAIKAVRKWGY 123 (401)
T ss_pred CCHHHHHHHHHHHhh-cccccc---ccC-CHHHHHHH----HHHHhhCCCCE-----EEEeCCcHHHHHHHHHHHHHHHH
Confidence 378888888776643 222211 111 23333344 45788888653 46788999999999987742
Q ss_pred ------CC-CEEEecCCCCCcccccccccchhccccCCce-----E-----EEEeceecCCCCCCCHHHHHHHhhhcCCe
Q 018300 191 ------PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----F-----ESMPYRLDESTGLVDYDMLEKTAILFRPK 253 (358)
Q Consensus 191 ------pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-----~-----~~~~~~~~~~~~~iD~d~le~~i~~~~~k 253 (358)
+| ++|++.+..+.|... + .+...+.. + .+..+ ...|++++++.+.+ +++
T Consensus 124 ~~~g~~~~~~~vi~~~~~~HG~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~d~~~le~~i~~-~~~ 189 (401)
T PRK00854 124 EVKGVPEGQAEIIVCADNFHGRTL-S------IVGFSTDPDARGGFGPFTPGFRVV------PFGDAEALEAAITP-NTV 189 (401)
T ss_pred hccCCCCCCceEEEECCCcCCccH-H------HHhccCCccccccCCCCCCCeEEe------CCCCHHHHHHHhCC-CeE
Confidence 24 677776543322110 0 00000000 0 01111 13588999998864 788
Q ss_pred EEEEcCCCC--CCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCcc--CcEE
Q 018300 254 LIIAGASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG--PRGG 322 (358)
Q Consensus 254 lIi~~~s~~--~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~G--p~GG 322 (358)
+|+++++.+ |...+ +++|+++|++||+++++|++|. |+...|... ...+ ..|+++++ |+|.| .+.|
T Consensus 190 aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~-g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~ig 266 (401)
T PRK00854 190 AFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQT-GLGRTGKLLAEEHEGIEADVTLIG--KALSGGFYPVS 266 (401)
T ss_pred EEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCchHhHHhhcCCCCCEEEec--ccccCCccCeE
Confidence 999876654 34444 9999999999999999999997 554333211 1122 46888875 99854 3688
Q ss_pred EEEEeCC
Q 018300 323 MIFFKKD 329 (358)
Q Consensus 323 ~I~~~~~ 329 (358)
+++++++
T Consensus 267 ~v~~~~~ 273 (401)
T PRK00854 267 AVLSNSE 273 (401)
T ss_pred EEEEcHH
Confidence 8998873
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-10 Score=106.49 Aligned_cols=168 Identities=23% Similarity=0.300 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCC-CCCcccc--cccccc-hhccccCCc
Q 018300 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDL-PHGGHLS--HGFMTP-KRRVSGTSI 222 (358)
Q Consensus 147 ~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~-~~ggh~s--~~~~~~-~~~~~~~g~ 222 (358)
|-||+. .++.||++.+. |.+++.|||.|+..++.++++|||+.+...- +|. .+. .+.... ...+...|.
T Consensus 68 dtLe~v----yA~vf~aE~a~--VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYD-TLeevIG~rg~~~gSL~dfgi 140 (416)
T COG4100 68 DTLERV----YAQVFGAEAAL--VRPQIISGTHAIACALFGILRPGDELLYITGSPYD-TLEEVIGLRGEGQGSLKDFGI 140 (416)
T ss_pred hHHHHH----HHHHhccccce--eeeeeecchhHHHHHHHhccCCCCeEEEecCCcch-hHHHHhccCCCCcccHHHhCc
Confidence 456654 68899999863 5678889999999999999999999886531 110 000 000000 011223344
Q ss_pred eEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-CCC-----CCCHHHHHHHHHHc--CCEEEEeccccccccc
Q 018300 223 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPR-----DFDYPRMRQIADAV--GALLMMDMAHISGLVA 294 (358)
Q Consensus 223 ~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-~~~-----~~dl~~I~~ia~e~--g~~livD~Ah~~Gl~~ 294 (358)
.++.++ +. .++.+|++.+++.+.+ ++|+|.+.-|- |.. +.++++++++.|+. +++++||+|+. .++-
T Consensus 141 ~Y~~v~--Lt-~~gkiD~~~v~~~i~~-~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYG-EFvE 215 (416)
T COG4100 141 KYKAVP--LT-ADGKIDIQAVKTAISD-RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYG-EFVE 215 (416)
T ss_pred ceeecc--cc-cCCcccHHHHHHhcCc-cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccch-hhhh
Confidence 455444 44 2589999999998874 89999885442 432 45678888888887 68999999954 2221
Q ss_pred cCCccCCCC-CCcEEEEcCcCcCccC---cEEEEEEeCC
Q 018300 295 ASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKD 329 (358)
Q Consensus 295 ~g~~~~pl~-gaDiv~~S~hK~L~Gp---~GG~I~~~~~ 329 (358)
...|-. |+|++.+|+-|.-+|. .||+|.++++
T Consensus 216 ---~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~ 251 (416)
T COG4100 216 ---EKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAE 251 (416)
T ss_pred ---ccCccccchhhhccceeeCCCCceeeccceeechHH
Confidence 124555 9999999999996553 4688988875
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.2e-10 Score=122.53 Aligned_cols=188 Identities=13% Similarity=0.128 Sum_probs=116.9
Q ss_pred CCCcHHHHHHHhhhhhcccCCCCCCCcCCCC--cHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeC-CCHHHHHHHHHHh
Q 018300 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG--NEYIDELETLCQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYTAI 188 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G--~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~-SGt~A~~~a~~al 188 (358)
.++|+.|++++.+.... |. .|. .|... .-..+.+.+ .+..+++++|++.+ |+.+. ++|.+..+++.++
T Consensus 115 ~~~P~~v~~~i~~~~~~-~T-ayt--PYqaEisQG~lqal~~-~Qt~ia~LtG~~~a----naSL~d~aTAaaea~~~a~ 185 (993)
T PLN02414 115 THVPPVILRNILENPGW-YT-QYT--PYQAEIAQGRLESLLN-YQTMITDLTGLPMS----NASLLDEGTAAAEAMAMCN 185 (993)
T ss_pred ccCCHHHHHHHHhChHH-Hh-hcC--CCchHHHHHHHHHHHH-HHHHHHHHhCCChh----hEeecCChHHHHHHHHHHH
Confidence 34788887887654321 11 121 12211 011233443 67889999999985 45545 5666777777776
Q ss_pred -ccCC--CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC-CCCCC
Q 018300 189 -LKPH--DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA-SAYPR 264 (358)
Q Consensus 189 -l~pG--D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~-s~~~~ 264 (358)
+++| |+|++++.+|+++..... ......|..++.++ ++. .| ...+ ..-.+++.. +.+|.
T Consensus 186 ~~~~g~~~~VlVs~~~hP~~~~v~~----t~a~~~GieV~~v~--~~~----~~------~~~~-~v~~vlvq~P~~~G~ 248 (993)
T PLN02414 186 NILKGKKKKFLIASNCHPQTIDVCQ----TRADGLGLEVVVAD--EKD----FD------YSSG-DVCGVLVQYPATDGE 248 (993)
T ss_pred hcccCCCCEEEEcCccCHhHHHHHH----HhhhhcCCEEEEec--chh----hc------cccC-ceEEEEEecCCCCeE
Confidence 6655 789999887766543210 11223455444333 321 11 0111 122233444 45788
Q ss_pred CCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCcC-----ccCcEEEEEEeCC
Q 018300 265 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSL-----RGPRGGMIFFKKD 329 (358)
Q Consensus 265 ~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L-----~Gp~GG~I~~~~~ 329 (358)
..|+++|.++||++|+++++ ++|.+++.. +..|-+ ||||+++++|||+ +||+.|+++++++
T Consensus 249 v~dv~~I~~~ah~~GaL~iV-aad~lal~~---l~~pge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~ 315 (993)
T PLN02414 249 VLDYAEFVKNAHANGVKVVM-ATDLLALTM---LKPPGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQE 315 (993)
T ss_pred EcCHHHHHHHHHHcCCEEEE-EECHHHhcC---CCCHhhccCcEEEECCCccccCCCCCCCCeeEEEECHH
Confidence 89999999999999999999 888877652 112333 9999999999997 7788899999884
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.5e-10 Score=104.94 Aligned_cols=194 Identities=19% Similarity=0.245 Sum_probs=125.0
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHh--cc
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAI--LK 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~al--l~ 190 (358)
.++.+...........+.++...+++..-..+.+ +-+..-++++-+.|+...+ |....+|+ -++.++.+. ..
T Consensus 43 ~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~-lp~~lgdklApLiGA~~~E----vvv~dtts~nl~k~L~aalr~~ 117 (407)
T COG3844 43 RPRAVTARLQQVATDEWGEGLIRSWNKAKADWFD-LPERLGDKLAPLIGARAGE----VVVTDTTSINLFKVLAAALRPQ 117 (407)
T ss_pred CchHHHHHHHHHHHHHHHhhhhhhhcccCCchhh-chhHHHHHhhhhhcCCCCc----eEEeCCcchHHHHHHHHHhccC
Confidence 4556666555566666665554444433334444 3334577899999998863 44455555 444455444 45
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCH
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDY 268 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl 268 (358)
+|++||+++- +++-..++.+..-....+. .|++ .+.++++++++.+.+ ++.+|.+++.+| |+..|+
T Consensus 118 ~~r~vIv~E~---~~fpTdly~a~g~~~~~~~-----~~~~---~~~~~P~~~~~~~~d-d~AvV~L~~V~y~TGql~dm 185 (407)
T COG3844 118 EGRRVIVSEG---DNFPTDLYIAEGLADLLGI-----GYDL---EGVIAPRALEEAITD-DVAVVLLSHVNYKTGQLLDM 185 (407)
T ss_pred CCceEEeecC---CCCCcchhhhcchhhhhcc-----cccc---eeeeChHHHHHhhcc-ceEEEEeccccccccceeeH
Confidence 6999999863 3222222211111122221 1222 246778899998865 677787776664 678999
Q ss_pred HHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE--EEEEEeCC
Q 018300 269 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG--GMIFFKKD 329 (358)
Q Consensus 269 ~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G--G~I~~~~~ 329 (358)
.+|.++||++|++++.|-||++|.+ |..+. |+|+.+.++||+|.|..| ++++..+.
T Consensus 186 ~aiT~~AH~~galv~wDLAHsaGav-----p~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~ 245 (407)
T COG3844 186 RAITALAHQHGALVGWDLAHSAGAV-----PVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPR 245 (407)
T ss_pred HHHHHHHHhcCceEEeehhcccCCc-----ceeecccCCCeeeeeeceeccCCCCCceeEEeccc
Confidence 9999999999999999999999865 33444 899999999999955444 67776653
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-09 Score=108.31 Aligned_cols=170 Identities=17% Similarity=0.144 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhcc-----CCCEEEe-cCCCCCcccccccccchhccccC
Q 018300 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILK-----PHDRIMG-LDLPHGGHLSHGFMTPKRRVSGT 220 (358)
Q Consensus 148 ~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~-----pGD~Vl~-~~~~~ggh~s~~~~~~~~~~~~~ 220 (358)
++++.+.+++.+.+|..-. + -+|++++|+. |+..++.++++ |||+|++ .+|.|.++...... .. .+.
T Consensus 78 ~LR~aia~~~~~~~g~~v~-~-~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~---~~-~~~ 151 (416)
T PRK09440 78 ELIEALAALLNERYGWNIS-P-QNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLE---ED-LFV 151 (416)
T ss_pred HHHHHHHHHHHHHhCCCCC-h-hhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhc---cC-cee
Confidence 5666667777776675321 1 2577788775 88888888874 6999999 68887765431100 00 011
Q ss_pred CceEEEEeceecCC--CCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCC---HHHHHHHHHHcCCEEEEecccccccc
Q 018300 221 SIYFESMPYRLDES--TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLV 293 (358)
Q Consensus 221 g~~~~~~~~~~~~~--~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~ 293 (358)
+......+ ++.+ ...+|+++++ +. .+++++++..++||+ ..+ +++|.++|+++|++|++|.++.....
T Consensus 152 ~~~~~~~~--~~~~~~~~~~d~~~l~--~~-~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~ 226 (416)
T PRK09440 152 SYRPNIEL--LPEGQFKYHVDFEHLH--ID-EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFP 226 (416)
T ss_pred eccccccc--ccccccccCCCHHHcc--cC-CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCC
Confidence 11112222 2222 2468999987 23 367888777667664 444 67888899999999999999752110
Q ss_pred ccCCccC--CC-CCCcEEEEcCcCc-CccCcEEEEEEeCC
Q 018300 294 AASVVAD--PF-KYCDVVTTTTHKS-LRGPRGGMIFFKKD 329 (358)
Q Consensus 294 ~~g~~~~--pl-~gaDiv~~S~hK~-L~Gp~GG~I~~~~~ 329 (358)
...... +. ..-=+++.|++|+ ++|.|.|+++++++
T Consensus 227 -~~~~~~~~~~~~~~vI~~~SfSK~~~pGlRiG~~i~~~~ 265 (416)
T PRK09440 227 -GIIFSEATPLWNPNIILCMSLSKLGLPGVRCGIVIADEE 265 (416)
T ss_pred -CcchhhcCccccCCeEEEecccccCCCcceEEEEeCCHH
Confidence 000000 00 1112678899997 47888899998764
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-09 Score=106.47 Aligned_cols=198 Identities=18% Similarity=0.143 Sum_probs=117.0
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh---cc
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---LK 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al---l~ 190 (358)
.+|.|.+++.+.+.... ..+.+| . .+... ..++++++++|.+. .+.+.||++|+..++..+ ..
T Consensus 44 ~~p~v~~a~~~~~~~~~---~~~~~~-~-~~~~~----~l~~~la~~~g~~~-----~~~~~sg~~a~~~a~~~~~~~~~ 109 (379)
T TIGR00707 44 AHPKLVEALKEQLEKLV---HVSNLY-Y-TEPQE----ELAEKLVEHSGADR-----VFFCNSGAEANEAALKLARKYTG 109 (379)
T ss_pred CCHHHHHHHHHHHhhcc---cccccc-C-CHHHH----HHHHHHHhhCCCCE-----EEEeCCcHHHHHHHHHHHHHHhh
Confidence 35888888877665321 111222 2 23223 34556888999864 356788999999988755 22
Q ss_pred ----CCCEEEecCCCCCcccccccccchhccccCCce-EEEEeceecCCCC---CCCHHHHHHHhhhcCCeEEEEcCCCC
Q 018300 191 ----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDESTG---LVDYDMLEKTAILFRPKLIIAGASAY 262 (358)
Q Consensus 191 ----pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~---~iD~d~le~~i~~~~~klIi~~~s~~ 262 (358)
+||+|+++++.+.++..... ...+.. +.....++.++.. ..|++++++.+.. ++++|++++.++
T Consensus 110 ~~~~~~~~vi~~~~~yh~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~p~~~ 181 (379)
T TIGR00707 110 DKGKEKKKIIAFENSFHGRTMGAL-------SATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDD-ETAAVIVEPIQG 181 (379)
T ss_pred ccCCCCCeEEEECCCcCCccHHHH-------HhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhh-CeeEEEEEcccc
Confidence 47999998876544322110 011100 0000111111111 1289999998764 688888865443
Q ss_pred C--C-CC---CHHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcCcCcCc-cCcEEEEEEeCCCCc
Q 018300 263 P--R-DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVL 332 (358)
Q Consensus 263 ~--~-~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~hK~L~-Gp~GG~I~~~~~~~~ 332 (358)
+ . .. ++++|.++|+++|+++++|++|. |+...+.. + .... ..|++ +++|+++ |.+.|+++.++
T Consensus 182 ~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~-~~~~~g~~~~~~~~~~~~d~~--t~sK~~~~G~riG~~~~~~---- 254 (379)
T TIGR00707 182 EGGVNPASAEFLKALREICKDKDALLIFDEVQT-GIGRTGKFFAYEHYGIEPDII--TLAKGLGGGVPIGATLAKE---- 254 (379)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhhhHHhcCCCCCEE--EEcccccCCcccEEEEEcH----
Confidence 2 2 12 37899999999999999999986 55333321 1 1112 34665 4579985 45779998876
Q ss_pred hhHHHHHHhh
Q 018300 333 GVELESAINN 342 (358)
Q Consensus 333 ~~~~~~~i~~ 342 (358)
++.+.+..
T Consensus 255 --~~~~~~~~ 262 (379)
T TIGR00707 255 --EVAEAFTP 262 (379)
T ss_pred --HHHhhhcC
Confidence 56565544
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.3e-10 Score=107.67 Aligned_cols=160 Identities=14% Similarity=0.080 Sum_probs=103.0
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~ 231 (358)
.++.+++++|.+.. +|.+++|+. ++..++. +++||+ |++++|.+..+.. .+...|.. ++++++
T Consensus 45 lr~~ia~~~~~~~~----~I~it~Gs~~~l~~~~~-~~~~~~-vv~~~P~y~~y~~--------~~~~~G~~--v~~vp~ 108 (332)
T PRK06425 45 IEDQIKIYTQGLKI----KVLIGPGLTHFIYRLLS-YINVGN-IIIVEPNFNEYKG--------YAFTHGIR--ISALPF 108 (332)
T ss_pred HHHHHHHHhCCCcc----eEEECCCHHHHHHHHHH-HhCCCc-EEEeCCChHHHHH--------HHHHcCCe--EEEEeC
Confidence 34558889999874 577788875 7777775 578876 5555765544321 33456764 445455
Q ss_pred cCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCC---C
Q 018300 232 DESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K 303 (358)
Q Consensus 232 ~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~ 303 (358)
++ ..+|.+.+++ .++|+|++..++||+ ..+ +++|.++|+++|+++++|+++. .+...+. ++.. +
T Consensus 109 ~~--~~~~~~~l~~----~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~-~~~~~~~-~~~~~~~~ 180 (332)
T PRK06425 109 NL--INNNPEILNN----YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFI-DFVPNRA-EEDVLLNR 180 (332)
T ss_pred Cc--ccCcHHHHhh----cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchh-ccccccc-hhHHHHhc
Confidence 43 2345554442 378988887677654 555 6677788899999999999854 4433221 1111 1
Q ss_pred C-C-cEEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 304 Y-C-DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 304 g-a-Div~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
. - -+++.|++|++ +|.|-|++++++ ++.+++..
T Consensus 181 ~~~~vi~~~SfSK~~~l~GlRiGy~v~~~------~li~~l~~ 217 (332)
T PRK06425 181 SYGNVIIGRSLTKILGIPSLRIGYIATDD------YNMKISRK 217 (332)
T ss_pred cCCCEEEEeecHHhcCCchhhheeeecCH------HHHHHHHH
Confidence 1 1 26778999985 678889999976 45555554
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.5e-09 Score=105.14 Aligned_cols=199 Identities=15% Similarity=0.088 Sum_probs=115.9
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc----
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all---- 189 (358)
.+|.|.+++...+.. +..+ + +.+ ..+... .+++.++++++.+. .++++||+.||..++....
T Consensus 48 ~~p~v~~a~~~~~~~-~~~~--~-~~~-~~~~~~----~~~~~l~~~~~~~~-----~~~~~SGs~A~e~al~~~~~~~~ 113 (400)
T PTZ00125 48 CHPKILAALINQAQK-LTLT--S-RAF-YNDVLG----LAEKYITDLFGYDK-----VLPMNSGAEAGETALKFARKWGY 113 (400)
T ss_pred CCHHHHHHHHHHHHh-cccc--c-ccc-cCHHHH----HHHHHHHhCCCCCE-----EEEeCCcHHHHHHHHHHHHHHHH
Confidence 578888888876542 2111 1 111 122222 34555777887643 4678899999999998663
Q ss_pred ------cCCCEEEecCCCCCcccccccccchhccccCCce-EEEEeceecCC---CCCCCHHHHHHHhhhcCCeEEEEcC
Q 018300 190 ------KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDES---TGLVDYDMLEKTAILFRPKLIIAGA 259 (358)
Q Consensus 190 ------~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~~~~~~~~~---~~~iD~d~le~~i~~~~~klIi~~~ 259 (358)
..+++|+..+-.+ |+.... .+...+.. ......+..+. -...|++++++.+...++++|++++
T Consensus 114 ~~~~~~~~~~~vl~~~~~~-----Hg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep 186 (400)
T PTZ00125 114 EVKGIPENQAKIIFCNGNF-----SGRTIG--ACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEP 186 (400)
T ss_pred hccCCCCCCCeEEEECCCc-----CCccHH--HHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcC
Confidence 1357788776432 222110 11111110 00000000000 0124899999988634688888865
Q ss_pred CC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-cCCCC--CCcEEEEcCcCcCccC--cEEEEEEeC
Q 018300 260 SA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPFK--YCDVVTTTTHKSLRGP--RGGMIFFKK 328 (358)
Q Consensus 260 s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~~pl~--gaDiv~~S~hK~L~Gp--~GG~I~~~~ 328 (358)
.. .|...+ +++|.++|++||+++++|++|. |+...|.. ..... ..|++++| |+|.+. +-|++++++
T Consensus 187 ~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~-g~g~~G~~~~~~~~~~~pd~~~~s--K~l~~g~~~ig~v~~~~ 263 (400)
T PTZ00125 187 IQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQT-GLGRTGKLLAHDHEGVKPDIVLLG--KALSGGLYPISAVLAND 263 (400)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhhHHHhcCCCCCEEEEc--ccccCCCcCcEEEEEcH
Confidence 43 345555 9999999999999999999985 54322321 11112 35888765 999653 668888877
Q ss_pred CCCchhHHHHHHhh
Q 018300 329 DPVLGVELESAINN 342 (358)
Q Consensus 329 ~~~~~~~~~~~i~~ 342 (358)
++.+++..
T Consensus 264 ------~~~~~~~~ 271 (400)
T PTZ00125 264 ------DVMLVIKP 271 (400)
T ss_pred ------HHHhhccC
Confidence 56565543
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-09 Score=104.51 Aligned_cols=196 Identities=17% Similarity=0.128 Sum_probs=119.9
Q ss_pred hcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC---CCCCCCcceEEeCCC
Q 018300 103 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN---LDENKWGVNVQPLSG 177 (358)
Q Consensus 103 ~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg---~~~~~~~v~V~~~SG 177 (358)
..+.|-..+| .+|+.+++++...+.......||. .| ..++++ .++++++ .+++ +|.+++|
T Consensus 20 ~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~Y~~----~~---~~~Lr~----aia~~~~~~~~~~~----~i~it~G 84 (335)
T PRK14808 20 DRTYLALNENPFPFPEDLVDEVFRRLNSDTLRIYYD----SP---DEELIE----KILSYLDTDFLSKN----NVSVGNG 84 (335)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC----CC---hHHHHH----HHHHHhCCCCCCcc----eEEEcCC
Confidence 3344444444 468889999876553321111322 12 223444 4666666 5553 5777777
Q ss_pred HH-HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEE
Q 018300 178 SP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 256 (358)
Q Consensus 178 t~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi 256 (358)
+. ++..++.++ |+|++.+|.|.++.. .+...|. +++.+++++ ++.+|.+. + .++++|+
T Consensus 85 a~~~i~~~~~~~----d~v~v~~P~y~~~~~--------~~~~~g~--~~~~v~~~~-~~~~~~~~----~--~~~~~i~ 143 (335)
T PRK14808 85 ADEIIYVMMLMF----DRSVFFPPTYSCYRI--------FAKAVGA--KFLEVPLTK-DLRIPEVN----V--GEGDVVF 143 (335)
T ss_pred HHHHHHHHHHHh----CcEEECCCCHHHHHH--------HHHHcCC--eEEEecCCC-cCCCChhH----c--cCCCEEE
Confidence 64 888888876 789998886655422 3345666 445555653 34444322 2 2468888
Q ss_pred EcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CC-cEEEEcCcCcCc--cCcEEEEEEeCCC
Q 018300 257 AGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YC-DVVTTTTHKSLR--GPRGGMIFFKKDP 330 (358)
Q Consensus 257 ~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-ga-Div~~S~hK~L~--Gp~GG~I~~~~~~ 330 (358)
+..++|| ...+.+++.+++ +++++|++|+++. .+. .......++ .. =+++.|++|+++ |.|-|++++++
T Consensus 144 i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~-~f~-~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~-- 218 (335)
T PRK14808 144 IPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYY-EFH-GESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSE-- 218 (335)
T ss_pred EeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchh-hhc-CCchHHHHHhCCCEEEEEechhhccCcccceEEEEeCH--
Confidence 8777765 578889999998 5799999999965 332 111111122 21 267889999974 78889999987
Q ss_pred CchhHHHHHHhhc
Q 018300 331 VLGVELESAINNA 343 (358)
Q Consensus 331 ~~~~~~~~~i~~~ 343 (358)
++.+++...
T Consensus 219 ----~~~~~l~~~ 227 (335)
T PRK14808 219 ----KFIDAYNRV 227 (335)
T ss_pred ----HHHHHHHHh
Confidence 455666543
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.7e-09 Score=104.49 Aligned_cols=196 Identities=14% Similarity=0.110 Sum_probs=112.8
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc---
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~--- 190 (358)
-+|.|.+++...+.. +... . +.. .++...+ ..++++++++.+. .++++||++|+..++.....
T Consensus 57 ~~p~v~~ai~~~~~~-~~~~--~-~~~-~~~~~~~----l~~~l~~~~~~~~-----~~~~~SGseA~e~Alk~a~~~~~ 122 (396)
T PRK04073 57 RHPKIIQALKDQADK-VTLT--S-RAF-HSDQLGP----WYEKVAKLTGKDM-----VLPMNTGAEAVETAIKAARRWAY 122 (396)
T ss_pred CCHHHHHHHHHHHhh-cccc--c-ccc-CCHHHHH----HHHHHHhcCCCCe-----EEEcCChHHHHHHHHHHHHHHhh
Confidence 478888888776542 2111 1 111 1222222 3455777777543 46678999999999876521
Q ss_pred ------CC-CEEEecCCCCCcccccccccchhccccCCce-----EEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEc
Q 018300 191 ------PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258 (358)
Q Consensus 191 ------pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~ 258 (358)
+| ++|+..+..+.|... + .+...+.. +.....++.. -...|++++++.+.. ++++|+++
T Consensus 123 ~~~g~~~~r~~ii~~~~~~HG~~~-~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~l~~~i~~-~~~~viie 193 (396)
T PRK04073 123 DVKGVEPNKAEIIACEGNFHGRTM-A------AVSLSSEEEYKRGFGPMLPGIKK-IPYGDLEALKAAITP-NTAAFLVE 193 (396)
T ss_pred hccCCCCCCCEEEEECCCcCCCCH-H------HHhhcCCcccccCCCCCCCCceE-eCCCCHHHHHHhccc-CeEEEEEc
Confidence 44 678877643322210 0 11112110 0000000000 012378999988753 67888888
Q ss_pred CCCC--CCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcCcCcCcc--CcEEEEEEe
Q 018300 259 ASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG--PRGGMIFFK 327 (358)
Q Consensus 259 ~s~~--~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~hK~L~G--p~GG~I~~~ 327 (358)
+..+ |...+ +++|.++|+++|+++++|++|. |+...|.. . ...+ ..|++++ .|.+++ .+.|+++++
T Consensus 194 p~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~~~~~~~~~~pdi~~~--sK~lg~gg~~ig~~~~~ 270 (396)
T PRK04073 194 PIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQT-GLGRTGKLFACDWDNVTPDMYIL--GKALGGGVFPISCVAAN 270 (396)
T ss_pred CccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-CCCcCcHHHHhhhcCCCCCEEEe--cccccCCCCcceEEEEc
Confidence 7643 44443 8999999999999999999988 54333321 1 1122 4687765 599854 467888888
Q ss_pred CCCCchhHHHHHHh
Q 018300 328 KDPVLGVELESAIN 341 (358)
Q Consensus 328 ~~~~~~~~~~~~i~ 341 (358)
+ ++.+.+.
T Consensus 271 ~------~i~~~~~ 278 (396)
T PRK04073 271 R------DILGVFT 278 (396)
T ss_pred H------HHHhhhc
Confidence 7 5666554
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-09 Score=115.41 Aligned_cols=150 Identities=17% Similarity=0.108 Sum_probs=101.3
Q ss_pred HHHHHHHHcCCCCCCCcceEEeC-CCHHHHHHHHHHh-ccCC--CEEEecCCCCCcccccccccchhccccCCceEEEEe
Q 018300 153 CQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYTAI-LKPH--DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP 228 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~-SGt~A~~~a~~al-l~pG--D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~ 228 (358)
.+..++++.|++.+ |+.+. ++|.+..+++.++ +++| |+|++++..|.++..... ......|. +++.
T Consensus 126 ~Qt~la~LtG~~~a----naSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~----t~a~~~G~--ev~~ 195 (954)
T PRK05367 126 FQTMVADLTGLEIA----NASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLR----TRAEPLGI--EVVV 195 (954)
T ss_pred HHHHHHHHHCCChh----hccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHH----HHHHhCCC--EEEE
Confidence 67789999999974 44444 6666777777776 6664 999999877765432110 11234455 4444
Q ss_pred ceecCCCCCCCHHHHHHHhhhcCCeEEEEcC-CCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCc
Q 018300 229 YRLDESTGLVDYDMLEKTAILFRPKLIIAGA-SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD 306 (358)
Q Consensus 229 ~~~~~~~~~iD~d~le~~i~~~~~klIi~~~-s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaD 306 (358)
++.+. |++ ..+...+++.. +.+|...|+++|+++||++|+++++|+.|.+... ...|-+ |||
T Consensus 196 ~~~~~-----d~~-------~~~~~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~----l~~pge~GaD 259 (954)
T PRK05367 196 GDAAK-----ALD-------HDDVFGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTL----LTPPGEMGAD 259 (954)
T ss_pred ecCcc-----CCC-------cccEEEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccC----CCChhhcCCC
Confidence 33331 111 11333444544 4578888999999999999999999997743322 123444 999
Q ss_pred EEEEcCcCc-----CccCcEEEEEEeC
Q 018300 307 VVTTTTHKS-----LRGPRGGMIFFKK 328 (358)
Q Consensus 307 iv~~S~hK~-----L~Gp~GG~I~~~~ 328 (358)
++++++||| ++||..|++.+++
T Consensus 260 i~vgs~qkfg~P~g~GGP~aGflavr~ 286 (954)
T PRK05367 260 IAVGSAQRFGVPMGFGGPHAAYFAVRD 286 (954)
T ss_pred EEEeeCcccCCCCCCCCCCEEEEEECH
Confidence 999999999 7888779999987
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.3e-09 Score=102.28 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=96.9
Q ss_pred HHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec
Q 018300 154 QKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (358)
Q Consensus 154 ~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~ 232 (358)
++.+++.+|.+ +|.+++|+. |+..++ .+.|||+|++.+|.|..+.. .+...|. +++++++
T Consensus 55 r~~ia~~~~~~------~I~it~Gs~~al~~~~--~~~~gd~v~v~~P~y~~~~~--------~~~~~g~--~~~~v~~- 115 (330)
T PRK05664 55 EAAARAYYGAP------QLLPVAGSQAAIQALP--RLRAPGRVGVLSPCYAEHAH--------AWRRAGH--QVRELDE- 115 (330)
T ss_pred HHHHHHHhCCC------CEEECcCHHHHHHHHH--HccCCCEEEEcCCChHHHHH--------HHHHcCC--eEEEech-
Confidence 44577788864 366788875 776654 46899999999986655422 2345565 4444333
Q ss_pred CCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCc-
Q 018300 233 ESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCD- 306 (358)
Q Consensus 233 ~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaD- 306 (358)
+++++.+. ++|++++..++|| ...+ +++|.++|+++|++|++|+++. ........ ..+..-|
T Consensus 116 --------~~~~~~~~--~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~-~~~~~~s~-~~~~~~~~ 183 (330)
T PRK05664 116 --------AEVEAALD--SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFM-DNTPQHSL-AACAHRPG 183 (330)
T ss_pred --------hhHhhhhc--CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcc-cCCCcccc-cccccCCC
Confidence 34555543 5677666555665 4555 5666677889999999999864 22211100 1122212
Q ss_pred -EEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 307 -VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 307 -iv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
+++.|++|++ +|.|-|++++++ ++.+++...
T Consensus 184 vi~~~SfSK~~gl~GlRiG~~v~~~------~l~~~~~~~ 217 (330)
T PRK05664 184 LIVLRSFGKFFGLAGARLGFVLAEP------ALLRALAEL 217 (330)
T ss_pred EEEEeeccccccCCCcceEEEEeCH------HHHHHHHHh
Confidence 7789999997 678889999976 455555543
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-08 Score=101.10 Aligned_cols=199 Identities=19% Similarity=0.092 Sum_probs=112.8
Q ss_pred cHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCC-C
Q 018300 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH-D 193 (358)
Q Consensus 115 s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pG-D 193 (358)
+|.+.+++...+.... ....+| . .+... ...++++++++.+..+ ..+++.||++|+..++.....+| +
T Consensus 61 ~p~v~~ai~~~~~~~~---~~~~~~-~-~~~~~----~la~~l~~~~~~~~~~--~v~~~~sgsea~~~al~~~~~~g~~ 129 (398)
T PRK03244 61 HPAVVEAVTRQLATLG---HVSNLF-A-TEPQI----ALAERLVELLGAPEGG--RVFFCNSGAEANEAAFKLARLTGRT 129 (398)
T ss_pred CHHHHHHHHHHHHhcc---CccCcc-C-CHHHH----HHHHHHHHhCCCCCCC--EEEEeCchHHHHHHHHHHHHHHCCC
Confidence 6888888877665421 111122 2 22112 2445678888854211 23556789999999998776676 4
Q ss_pred EEEecCCCCCcccccccccchhccccCCceEEEEec-eecCCC---CCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCC
Q 018300 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDEST---GLVDYDMLEKTAILFRPKLIIAGASAY--PRDFD 267 (358)
Q Consensus 194 ~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~-~~~~~~---~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~d 267 (358)
+|+..+..|.|+.. ......+.......+ +...+. ...|++++++.+. .++++|++++..+ |...+
T Consensus 130 ~ii~~~~~yhg~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~aviiep~~~~~G~~~~ 201 (398)
T PRK03244 130 KIVAAEGGFHGRTM-------GALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVD-DDTAAVFLEPIQGEAGVVPP 201 (398)
T ss_pred eEEEECCCcCCccH-------HHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhc-CCeEEEEEecccCCCCCcCC
Confidence 66666544433211 011111210000000 000000 0137899998875 3678888876543 34444
Q ss_pred ----HHHHHHHHHHcCCEEEEeccccccccccCCcc-CC-CC-CCcEEEEcCcCcCc-cCcEEEEEEeCCCCchhHHHHH
Q 018300 268 ----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DP-FK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVELESA 339 (358)
Q Consensus 268 ----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~-~p-l~-gaDiv~~S~hK~L~-Gp~GG~I~~~~~~~~~~~~~~~ 339 (358)
+++|.++|+++|+++|+|++|+ |+...|... .. .+ ..|++++ .|+|+ |.+.|+++.++ ++.+.
T Consensus 202 ~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~g~~~~~~~~~~~pDi~t~--sK~l~~G~~ig~~~~~~------~~~~~ 272 (398)
T PRK03244 202 PAGYLAAAREITDRHGALLVLDEVQT-GIGRTGAWFAHQHDGVTPDVVTL--AKGLGGGLPIGACLAFG------PAADL 272 (398)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecccc-CCcccchHHhhhhhCCCCCEEEE--chhhhCCcccEEEEEcH------HHHhh
Confidence 8899999999999999999986 543333211 11 12 4677755 59995 44567777776 45555
Q ss_pred Hh
Q 018300 340 IN 341 (358)
Q Consensus 340 i~ 341 (358)
+.
T Consensus 273 ~~ 274 (398)
T PRK03244 273 LT 274 (398)
T ss_pred cc
Confidence 44
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-08 Score=104.39 Aligned_cols=173 Identities=20% Similarity=0.177 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--cc-------CC------------------C---
Q 018300 144 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK-------PH------------------D--- 193 (358)
Q Consensus 144 ~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~-------pG------------------D--- 193 (358)
+....+|+.+-+++++++|.+. .|| +++++||.||+.++.+. .+ .+ |
T Consensus 119 P~~t~lE~~vi~~la~l~G~~~-~~G--~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~ 195 (608)
T TIGR03811 119 PATSQMEEEVGKEFATLMGYKN-GWG--HIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIM 195 (608)
T ss_pred chHHHHHHHHHHHHHHHhCCCC-CCe--EEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhccccccccc
Confidence 3455799999999999999986 465 45678999998876442 11 00 0
Q ss_pred ----------------------------EEEecCCCCCcccccccccchhccccCCceE-EEEeceecCCCCCCCHHHHH
Q 018300 194 ----------------------------RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLE 244 (358)
Q Consensus 194 ----------------------------~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~iD~d~le 244 (358)
+|+++. .+|+|. .|++.+.|... .++.+++| +++.+|+++|+
T Consensus 196 ~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~---~aHyS~-----~KAa~ilGlG~~~vv~VpvD-~~~rmd~~~L~ 266 (608)
T TIGR03811 196 DLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQ---TKHYSW-----LKAADIIGIGLDQVIPVPVD-SNYRMDINELE 266 (608)
T ss_pred ccccccccchhhhhhhccccccccccceEEEECC---CccHHH-----HHHHHHcCCCcccEEEeecC-CCCcCCHHHHH
Confidence 244433 245442 13445566542 23455566 46799999999
Q ss_pred HHhhhc----CCe-EEEE--cCCCCCCCCCHHHHHHHH---HHcCC--EEEEecccccccc----ccC------------
Q 018300 245 KTAILF----RPK-LIIA--GASAYPRDFDYPRMRQIA---DAVGA--LLMMDMAHISGLV----AAS------------ 296 (358)
Q Consensus 245 ~~i~~~----~~k-lIi~--~~s~~~~~~dl~~I~~ia---~e~g~--~livD~Ah~~Gl~----~~g------------ 296 (358)
+.+++. .|- .|+. +.+..|.+-|+++|.++| +++|+ ++++|+|+. |.. ...
T Consensus 267 ~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyG-G~~~~l~~~~~~~~~p~~~~~~ 345 (608)
T TIGR03811 267 KIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYG-GYGRAIFLDEDDNFIPYDDLQE 345 (608)
T ss_pred HHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeecccc-chhhhhhccccccccccchhhc
Confidence 888532 222 2332 455677788899999998 66887 699999976 321 110
Q ss_pred ------Cc------c--------CCCCCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 297 ------VV------A--------DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 297 ------~~------~--------~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
.+ . ..+++||-++..+||++..|-+ |+++.++.
T Consensus 346 ~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~ 399 (608)
T TIGR03811 346 VHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDI 399 (608)
T ss_pred ccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCH
Confidence 00 0 0134799999999999988865 88888876
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-09 Score=105.07 Aligned_cols=186 Identities=21% Similarity=0.183 Sum_probs=126.6
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcH-HHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNE-YIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP 191 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~-~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~p 191 (358)
+..+.+.+++. +|.....++|...|+. ...++|+ ..++++|.+++ +.+.-|...|...+.+++.|
T Consensus 155 ~ca~~~~~~~~-----kygl~~css~~e~G~~~~hkelE~----l~A~f~g~e~a-----~vF~mGf~TNs~~~p~l~~~ 220 (519)
T KOG1357|consen 155 PCAEASLKSFD-----KYGLSRCSSRHEAGTTEEHKELEE----LVARFLGVEDA-----IVFSMGFATNSMNIPSLLGK 220 (519)
T ss_pred cCChHHHHHHH-----HhcccccccchhcccHHHHHHHHH----HHHHhcCCcce-----EEEeccccccccCcceeecC
Confidence 34667777764 3333344455555553 3345555 47899999984 55778888888899999999
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh---------cCC--eEEEEcC-
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---------FRP--KLIIAGA- 259 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~---------~~~--klIi~~~- 259 (358)
|..|+...+.|.+-.. .+.++|...++.. . -|.++||+++++ ++| |++++..
T Consensus 221 gsLIiSDelNHaSi~~--------GaRLSgAtiRVfk--H------Ndm~~LEr~Lrd~I~~gqP~Thrp~kki~iiveg 284 (519)
T KOG1357|consen 221 GSLIISDELNHASLIT--------GARLSGATTRVFR--H------NDMQGLERLLRDAIVYGQPKTHRPWKKILICVEG 284 (519)
T ss_pred Ccceeeccccchheec--------cccccCceEEEEe--c------CCHHHHHHHHHHHHhcCCCCcCCcchheeeeecc
Confidence 9999998887765322 3356776544433 2 255666666543 233 4555543
Q ss_pred --CCCCCCCCHHHHHHHHHHcCCEEEEecccccccccc-CC----ccCCCC-CCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 260 --SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV----VADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 260 --s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~----~~~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
+.-+.+.++.++.+++|++.++|+.|+||+.|.... |. ++.+=+ .+|++.+++.|+++ --||.|.++++
T Consensus 285 iysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfg-a~GGyiagsk~ 361 (519)
T KOG1357|consen 285 IYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFG-AAGGYIAGSKE 361 (519)
T ss_pred ceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhcc-cccceecCcHH
Confidence 334678999999999999999999999999998742 21 111111 68999999999864 56899998884
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.8e-09 Score=103.30 Aligned_cols=196 Identities=16% Similarity=0.141 Sum_probs=113.1
Q ss_pred cHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCC--
Q 018300 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH-- 192 (358)
Q Consensus 115 s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pG-- 192 (358)
+|.|.+++...+.... +....| ..+ .+....+++++++|.+. .++++||++|+.+++..+..++
T Consensus 57 ~p~v~~a~~~~~~~~~---~~~~~~--~~~----~~~~la~~l~~~~~~~~-----v~~~~gg~eA~~~al~~a~~~~~~ 122 (396)
T PRK02627 57 HPKLVEAIQEQAAKLI---HTSNLY--YIE----PQEELAEKLVELSGMDK-----VFFCNSGAEANEAAIKLARKYGHK 122 (396)
T ss_pred CHHHHHHHHHHHhhcc---cccccc--CCH----HHHHHHHHHHhhcCCCE-----EEECCCcHHHHHHHHHHHHHHhcc
Confidence 4788888877664321 111111 123 33345566778877643 3566789999999998765443
Q ss_pred -----CEEEecCCCCCcccccccccchhccccCCce-EEEEeceecCCC---CCCCHHHHHHHhhhcCCeEEEEcCCCCC
Q 018300 193 -----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAILFRPKLIIAGASAYP 263 (358)
Q Consensus 193 -----D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~iD~d~le~~i~~~~~klIi~~~s~~~ 263 (358)
++|++.+..+.|.... .+...+.. +.....++.++. ...|++++++.+. .++++|++++..++
T Consensus 123 ~~~~~~~ii~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~-~~~~~vii~p~~~~ 194 (396)
T PRK02627 123 KGIEKPEIITAENSFHGRTLA-------TLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAIT-DKTAAVMLEPIQGE 194 (396)
T ss_pred cCCCCCeEEEECCCcCcccHH-------HHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhcC-CCeEEEEEecccCC
Confidence 6788876544332110 11111110 000001111100 0228899999885 36888888754432
Q ss_pred ---CCC---CHHHHHHHHHHcCCEEEEeccccccccccCCccC--CCC-CCcEEEEcCcCcCc-cCcEEEEEEeCCCCch
Q 018300 264 ---RDF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLG 333 (358)
Q Consensus 264 ---~~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~--pl~-gaDiv~~S~hK~L~-Gp~GG~I~~~~~~~~~ 333 (358)
... .+++|.++|+++|+++++|++|. |+...+.... .++ ..|+++ +.|.+. |.+.|++++++
T Consensus 195 ~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~-g~g~~g~~~~~~~~~~~pdi~t--~sK~~~~G~rig~~~~~~----- 266 (396)
T PRK02627 195 GGVNPADKEYLQALRELCDENGILLILDEVQT-GMGRTGKLFAYQHYGIEPDIMT--LAKGLGGGVPIGAVLAKE----- 266 (396)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEechhc-CCCccCceeeehhcCCCCCEEE--EcchhhCCcccEEEEEcH-----
Confidence 122 38999999999999999999987 5543332111 112 346664 569985 45678888876
Q ss_pred hHHHHHHh
Q 018300 334 VELESAIN 341 (358)
Q Consensus 334 ~~~~~~i~ 341 (358)
++.+.+.
T Consensus 267 -~~~~~~~ 273 (396)
T PRK02627 267 -KVADVFT 273 (396)
T ss_pred -HHHhccC
Confidence 4555554
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-08 Score=100.53 Aligned_cols=196 Identities=17% Similarity=0.144 Sum_probs=112.3
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc----
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all---- 189 (358)
-+|.|.+++.+.+.+-+.. +..+ .++...+ ..++++++++.+. ..+++||++||..++....
T Consensus 52 ~~p~v~~a~~~~~~~~~~~---~~~~--~~~~~~~----la~~L~~~~~~~~-----~~f~~SGseA~e~Alk~ar~~~~ 117 (397)
T TIGR03246 52 AHPELVKALIEQADKLWHI---GNGY--TNEPVLR----LAKKLVDATFADK-----VFFCNSGAEANEAALKLARRYAL 117 (397)
T ss_pred CCHHHHHHHHHHHHhcccc---cCcc--CCHHHHH----HHHHHHhhCCCCE-----EEEeCCcHHHHHHHHHHHHHHHH
Confidence 4788888887776542211 1111 1232223 3455777877543 4667899999999998651
Q ss_pred ----cCCCEEEecCCCCCcccccccccchhccccCCce-----EEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCC
Q 018300 190 ----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (358)
Q Consensus 190 ----~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s 260 (358)
...++|+..+-.+.| +... .+...+.. +...+-++. .-...|++++++.+.+ ++++|++++.
T Consensus 118 ~~~~~~r~~ii~~~~~yHG-----~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~~~l~~-~~aavi~Epi 188 (397)
T TIGR03246 118 DKHGADKSEIVAFKNSFHG-----RTLF--TVSVGGQPKYSQGFAPLPGGIK-HAPYNDLAAAKALISD-KTCAVIVEPI 188 (397)
T ss_pred hcCCCCCCEEEEECCCcCC-----ccHH--HHHhcCCcccccCCCCCCCceE-EeCCCCHHHHHHHhcc-CeEEEEEecc
Confidence 123567776533222 2100 11122210 000000000 0012488999998863 6788888754
Q ss_pred C--CCC----CCCHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcC-ccCcEEEEEEeCCC
Q 018300 261 A--YPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL-RGPRGGMIFFKKDP 330 (358)
Q Consensus 261 ~--~~~----~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L-~Gp~GG~I~~~~~~ 330 (358)
. .+. ...+++|+++|++||+++|+|++| .|+...|... ..++ ..|++ ++.|.| +|.+.|++++++
T Consensus 189 ~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tG~Gr~G~~~a~~~~gv~pDi~--t~~K~lggG~pigav~~~~-- 263 (397)
T TIGR03246 189 QGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TGVGRTGELYAYMHYGVTPDIL--TSAKALGGGFPIGAMLTTT-- 263 (397)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh-hcCCccccchhhhhcCCCCCEE--EeehhhhCCcceeEEEEcH--
Confidence 3 222 233899999999999999999999 5764334321 1122 45776 557999 556678888876
Q ss_pred CchhHHHHHHh
Q 018300 331 VLGVELESAIN 341 (358)
Q Consensus 331 ~~~~~~~~~i~ 341 (358)
++.+.++
T Consensus 264 ----~i~~~~~ 270 (397)
T TIGR03246 264 ----EIAAHLK 270 (397)
T ss_pred ----HHHHhcc
Confidence 5555554
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-08 Score=101.05 Aligned_cols=198 Identities=19% Similarity=0.141 Sum_probs=112.7
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-ccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~pG 192 (358)
.+|.|.+++.+.+.+... .+..+ .. +++..+.+++.+.++.+. .++++||++|+..++... ..+|
T Consensus 46 ~~p~v~~a~~~~~~~~~~---~~~~~--~~----~~~~~la~~l~~~~~~~~-----~~~~~sG~~a~~~A~~~a~~~~g 111 (377)
T PRK02936 46 CHPTVTKAVQEQLDDIWH---VSNLF--TN----SLQEEVASLLAENSAGDL-----VFFCNSGAEANEAALKLARKHTG 111 (377)
T ss_pred CCHHHHHHHHHHHHhccc---ccccc--CC----HHHHHHHHHHHhcCCCCE-----EEEeCCcHHHHHHHHHHHHHhcC
Confidence 578888888777654211 11111 12 344445566666665432 366789999999999854 2344
Q ss_pred -CEEEecCCCCCcccccccccchhccccCCce-EEEEeceecCCC---CCCCHHHHHHHhhhcCCeEEEEcCCCC--CC-
Q 018300 193 -DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAILFRPKLIIAGASAY--PR- 264 (358)
Q Consensus 193 -D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~iD~d~le~~i~~~~~klIi~~~s~~--~~- 264 (358)
++|++.+..+.|... + .+...+.. +..-..++.++. ...|++++++.+.. ++++|++++... |.
T Consensus 112 ~~~vi~~~~~~Hg~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~ii~e~i~~~~G~~ 183 (377)
T PRK02936 112 KSKIVTFEQSFHGRTF-G------TMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNE-EVAAVMLEVVQGEGGVI 183 (377)
T ss_pred CCeEEEECCCcCCCcH-H------hhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccC-CeEEEEEecccCCCCCc
Confidence 568887654332211 0 11111110 000000011110 12278999998753 678888865432 21
Q ss_pred ---CCCHHHHHHHHHHcCCEEEEeccccccccccCCccC--CCC-CCcEEEEcCcCcCc-cCcEEEEEEeCCCCchhHHH
Q 018300 265 ---DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVELE 337 (358)
Q Consensus 265 ---~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~--pl~-gaDiv~~S~hK~L~-Gp~GG~I~~~~~~~~~~~~~ 337 (358)
..++++|.++|++||+++++|++|. |+...|.... .+. ..|++ +++|++. |.++|++++++ ++.
T Consensus 184 ~~~~~~l~~l~~l~~~~~~~lI~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~ig~v~~~~------~~~ 254 (377)
T PRK02936 184 PADPAFLQEVQTLCKKFGALLIIDEVQT-GIGRTGTLFAYEQFGLDPDIV--TVAKGLGNGIPVGAMIGKK------ELG 254 (377)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCchhhHHHhhCCCCcEE--EEcccccCCCccEEEEEcH------HHH
Confidence 1238999999999999999999985 6544442111 111 34665 5689984 45788998876 565
Q ss_pred HHHhh
Q 018300 338 SAINN 342 (358)
Q Consensus 338 ~~i~~ 342 (358)
+.+..
T Consensus 255 ~~~~~ 259 (377)
T PRK02936 255 TAFGP 259 (377)
T ss_pred hhccC
Confidence 65543
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-08 Score=98.77 Aligned_cols=191 Identities=17% Similarity=0.123 Sum_probs=111.7
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh---c-
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---L- 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al---l- 189 (358)
-+|.|.+++...+.+....+ .....+...+ +.++++++++.+. ..+++||++||..++... .
T Consensus 57 ~~p~v~~a~~~~~~~~~~~~-----~~~~~~~~~~----l~~~l~~~~~~~~-----~~~~~sGseA~e~a~klar~~~~ 122 (403)
T PRK05093 57 CHPALVKALKEQGEKLWHIS-----NVFTNEPALR----LAKKLIDATFAER-----VFFANSGAEANEAAFKLARRYAC 122 (403)
T ss_pred CCHHHHHHHHHHHHhcCccc-----CccCCHHHHH----HHHHHHhhCCCCE-----EEEeCchHHHHHHHHHHHHHHHh
Confidence 58888888887765422111 1112332223 3445777776543 467789999999999754 1
Q ss_pred ----cCCCEEEecCCC-CCcccccccccchhccccCCc-----eE-----EEEeceecCCCCCCCHHHHHHHhhhcCCeE
Q 018300 190 ----KPHDRIMGLDLP-HGGHLSHGFMTPKRRVSGTSI-----YF-----ESMPYRLDESTGLVDYDMLEKTAILFRPKL 254 (358)
Q Consensus 190 ----~pGD~Vl~~~~~-~ggh~s~~~~~~~~~~~~~g~-----~~-----~~~~~~~~~~~~~iD~d~le~~i~~~~~kl 254 (358)
...++|+..+-. ||.+.. .+...+. .+ ....+ ...|++++++.+.. ++++
T Consensus 123 ~~~~~~~~~ii~~~~~~HG~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~------~~~d~~~l~~~l~~-~~aa 187 (403)
T PRK05093 123 DRHGPEKTEIIAFHNSFHGRTLF--------TVSVGGQPKYSDGFGPKPADITHV------PFNDLAAVKAVIDD-HTCA 187 (403)
T ss_pred hcCCCCCCeEEEEcCCcCCchhh--------hHhhcCChhhhhcCCCCCCCcEEe------CCCCHHHHHHHhcC-CeEE
Confidence 123467766643 332210 1111110 00 01111 12388999988753 6888
Q ss_pred EEEcCCC-CCCC-----CCHHHHHHHHHHcCCEEEEeccccccccccCCccC--CCC-CCcEEEEcCcCcC-ccCcEEEE
Q 018300 255 IIAGASA-YPRD-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKSL-RGPRGGMI 324 (358)
Q Consensus 255 Ii~~~s~-~~~~-----~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~--pl~-gaDiv~~S~hK~L-~Gp~GG~I 324 (358)
|++++.+ .+.. ..+++|.++|++||+++|+|++|. |+...|.... .++ ..|+. |+.|++ +|.+.|++
T Consensus 188 iiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~--s~sK~l~~G~rig~v 264 (403)
T PRK05093 188 VVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQT-GMGRTGDLFAYMHYGVTPDIL--TSAKALGGGFPIGAM 264 (403)
T ss_pred EEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCccchhhhhcCCCCCEE--EecccccCCcceEEE
Confidence 8887433 1222 228999999999999999999988 7654443211 111 34655 567998 56778999
Q ss_pred EEeCCCCchhHHHHHHhh
Q 018300 325 FFKKDPVLGVELESAINN 342 (358)
Q Consensus 325 ~~~~~~~~~~~~~~~i~~ 342 (358)
++++ ++.+.+..
T Consensus 265 v~~~------~i~~~l~~ 276 (403)
T PRK05093 265 LTTA------EIASHFKV 276 (403)
T ss_pred EEcH------HHHhhcCC
Confidence 9887 56555543
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.8e-08 Score=97.35 Aligned_cols=193 Identities=14% Similarity=0.087 Sum_probs=111.8
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc----
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all---- 189 (358)
.+|.|.+++...+.. +..+. +.+ ..+...++ .+++++++|.+. .++++||++||..++....
T Consensus 54 ~~p~v~~a~~~~~~~-~~~~~---~~~-~~~~~~~l----~~~l~~~~~~~~-----~~~~~SGs~A~e~ai~~a~~~~~ 119 (401)
T TIGR01885 54 CHPKIVKALTEQAQK-LTLSS---RAF-YNDVFGEF----AEYVTKLFGYDK-----VLPMNTGAEAVETAIKLARKWGY 119 (401)
T ss_pred CCHHHHHHHHHHHHh-ccccc---ccc-CCHHHHHH----HHHHHhhcCCCE-----EEEeCccHHHHHHHHHHHHHHhh
Confidence 478888888876643 22111 111 22323333 445778888543 4678899999999998741
Q ss_pred -----cC-CCEEEecCCCCCcccccccccchhccccCCce-----E-----EEEeceecCCCCCCCHHHHHHHhhhc--C
Q 018300 190 -----KP-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----F-----ESMPYRLDESTGLVDYDMLEKTAILF--R 251 (358)
Q Consensus 190 -----~p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-----~-----~~~~~~~~~~~~~iD~d~le~~i~~~--~ 251 (358)
.+ .++|+.....|.|... ..+...+.. + ....++ ..|++++++.++.. +
T Consensus 120 ~~~~~~~~~~~i~~~~~~yhg~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~ 186 (401)
T TIGR01885 120 KVKGIPENQAIIVSAKGNFHGRTL-------GAISMSTDPDSRTNFGPYVPGFKKIP------YNNLEALEEALEDHGPN 186 (401)
T ss_pred hhcCCCCCCCEEEEECCCcCcccH-------HHHhCcCCcccccccCCCCCCceEeC------CCCHHHHHHHHHhcCCC
Confidence 23 3566666544333210 011222110 0 011111 23789999887543 3
Q ss_pred CeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCccC--CCC-CCcEEEEcCcCcCcc--Cc
Q 018300 252 PKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKSLRG--PR 320 (358)
Q Consensus 252 ~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~--pl~-gaDiv~~S~hK~L~G--p~ 320 (358)
..+|++++. ..|...+ +++|.++|++||+++++|++|. |+...|.... ..+ ..|++++| |.|.| .+
T Consensus 187 ~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~g~~G~~~~~~~~~~~~di~~~g--K~l~~g~~~ 263 (401)
T TIGR01885 187 VCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQT-GLGRTGKLLCVDHENVKPDIVLLG--KALSGGVYP 263 (401)
T ss_pred EEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchhhHHhhcCCCCCEEEee--ccccCCCCC
Confidence 346666543 2344443 8999999999999999999994 6543443211 112 46888765 99865 45
Q ss_pred EEEEEEeCCCCchhHHHHHHhh
Q 018300 321 GGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 321 GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
-|++++++ ++.+.+..
T Consensus 264 ig~v~~~~------~i~~~~~~ 279 (401)
T TIGR01885 264 VSAVLADD------DVMLTIKP 279 (401)
T ss_pred cEEEEEcH------HHHhhccC
Confidence 57788776 55555543
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.6e-08 Score=97.06 Aligned_cols=196 Identities=20% Similarity=0.159 Sum_probs=114.1
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--cc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~ 190 (358)
+.+|.|.+++...+.+.. . |...++. .. ..++++++++.... ..++++||++|+..++... ..
T Consensus 64 h~~p~v~~ai~~q~~~~~--~-----~~~~~~~---~~-~lae~l~~~~~~~~----~v~~~~sGseA~e~Alk~ar~~~ 128 (423)
T TIGR00713 64 HAHPRVVEAVKEALERGT--S-----YGAPTEA---EI-LLAKEIISRVPSVE----MVRFVNSGTEATMSAVRLARGYT 128 (423)
T ss_pred CCCHHHHHHHHHHHHhCC--c-----CCCCCHH---HH-HHHHHHHHhCCccc----EEEEeCCHHHHHHHHHHHHHHhh
Confidence 568999999888775421 1 1111221 22 24556777775432 2356789999999988753 33
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCce-E---------E---EEeceecCCCCCCCHHHHHHHhhh--cCCeEE
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-F---------E---SMPYRLDESTGLVDYDMLEKTAIL--FRPKLI 255 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~---------~---~~~~~~~~~~~~iD~d~le~~i~~--~~~klI 255 (358)
..++|++.+..|.|+... . ......+.. + . ...+.+. ..|++++++.+.. .++++|
T Consensus 129 gr~~ii~~~~~yhG~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~i~~~~~~~aav 199 (423)
T TIGR00713 129 GRDKIIKFEGCYHGHHDA-L----LVKAGSGAATLGLPTSPGVPEDFAKLTLVLP----YNDLEALEEVFEEYGEEIAGV 199 (423)
T ss_pred CCCEEEEEcCCCCCChhh-h----hccccCcccccCCCCCCCCCcccccceEEeC----CCCHHHHHHHHHHcCCcEEEE
Confidence 568999887655443110 0 000000000 0 0 0001111 1388999988863 256777
Q ss_pred EEcC--CCCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc-CCCC-CCcEEEEcCcCcCc-cCcEEEEEE
Q 018300 256 IAGA--SAYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPFK-YCDVVTTTTHKSLR-GPRGGMIFF 326 (358)
Q Consensus 256 i~~~--s~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~-~pl~-gaDiv~~S~hK~L~-Gp~GG~I~~ 326 (358)
++++ ++.|...+ +++|.++|+++|+++|+|++|. |+..+.... ..++ ..|++ ++.|.++ |.+.|++++
T Consensus 200 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~r~g~~~~~~~~~~~pDi~--t~sK~l~~G~pig~v~~ 276 (423)
T TIGR00713 200 IVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMT-GFRVALGGAQEYFGVEPDLT--TLGKIIGGGLPVGAFGG 276 (423)
T ss_pred EEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-ccccCcchhHHHhCCCcchh--hhhhhhcCCCceeeeeE
Confidence 7752 33344333 7899999999999999999985 664321111 1122 34655 5789984 567899999
Q ss_pred eCCCCchhHHHHHHh
Q 018300 327 KKDPVLGVELESAIN 341 (358)
Q Consensus 327 ~~~~~~~~~~~~~i~ 341 (358)
++ ++.+.+.
T Consensus 277 ~~------~i~~~~~ 285 (423)
T TIGR00713 277 RR------EIMERLA 285 (423)
T ss_pred HH------HHHHhhC
Confidence 87 5666664
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-07 Score=93.04 Aligned_cols=199 Identities=20% Similarity=0.160 Sum_probs=123.3
Q ss_pred cHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccCC
Q 018300 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH 192 (358)
Q Consensus 115 s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~pG 192 (358)
+|.|.+|+.+.+.+..+.|.|. ++|-.+.+.+.+++..-.. .-+++|||+|++.+++.- .-..
T Consensus 71 ~p~V~~Av~~~l~~G~~fg~Pt-----------e~Ei~~Aell~~~~p~~e~----vrfvnSGTEAtmsAiRlARa~TgR 135 (432)
T COG0001 71 HPAVVEAVQEQLERGLSFGAPT-----------ELEVELAELLIERVPSIEK----VRFVNSGTEATMSAIRLARAYTGR 135 (432)
T ss_pred CHHHHHHHHHHHHhcCCCCCCC-----------HHHHHHHHHHHHhcCcccE----EEEecchhHHHHHHHHHHHHhhCC
Confidence 7789999988887766655554 3555566788888887432 234689999999998653 3456
Q ss_pred CEEEecCCCCCcccccccccchhc-c-----ccCCce----EEEEeceecCCCCCCCHHHHHHHhhhc--CCeEEEEcC-
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRR-V-----SGTSIY----FESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGA- 259 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~-~-----~~~g~~----~~~~~~~~~~~~~~iD~d~le~~i~~~--~~klIi~~~- 259 (358)
|+|+..+-.|.||.-...+..... . ...|.. -..+.++ .-|++.++++++.. +...|++++
T Consensus 136 ~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~------yND~~al~~~~~~~g~~IAaVIvEPv 209 (432)
T COG0001 136 DKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLP------YNDLEALEEAFEEYGDDIAAVIVEPV 209 (432)
T ss_pred CeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEec------CCCHHHHHHHHHHcCCcEEEEEeccc
Confidence 889888766655533211100000 0 001110 0111111 34889999998765 455677765
Q ss_pred -CCCCCCCC----HHHHHHHHHHcCCEEEEecccccccccc-CCccCCCC-CCcEEEEcCcCcCc-cCcEEEEEEeCCCC
Q 018300 260 -SAYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAA-SVVADPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPV 331 (358)
Q Consensus 260 -s~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~~~~pl~-gaDiv~~S~hK~L~-Gp~GG~I~~~~~~~ 331 (358)
.|.|.+.+ ++.++++|+|+|++||.|+.+. |+... +-.+.-+. ..|+. ++-|-++ |..-|++-+++
T Consensus 210 ~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViT-GFR~~~gGaq~~~gi~PDlt--tlGKiIGGGlP~ga~gGr~--- 283 (432)
T COG0001 210 AGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVIT-GFRVALGGAQGYYGVEPDLT--TLGKIIGGGLPIGAFGGRA--- 283 (432)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchh-hcccCCcccccccCcCcchh--hhhhhhcCCcceeeeccHH---
Confidence 34454333 8899999999999999999876 44322 21222222 45776 4559885 45668888877
Q ss_pred chhHHHHHHhhc
Q 018300 332 LGVELESAINNA 343 (358)
Q Consensus 332 ~~~~~~~~i~~~ 343 (358)
++.+.+...
T Consensus 284 ---eiM~~~~p~ 292 (432)
T COG0001 284 ---EIMEQLAPL 292 (432)
T ss_pred ---HHHhhhCCC
Confidence 677766553
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.9e-08 Score=94.78 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=94.3
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~ 231 (358)
.++.+++++|+...+ +|.+++|+. ++..+ ..+++||| |++.+|.+..+.. .+...|. ++++++.
T Consensus 58 L~~~ia~~~~~~~~~---~I~i~~Gs~e~i~~l-~~~~~~g~-v~v~~P~y~~y~~--------~~~~~g~--~~~~v~~ 122 (339)
T PRK06959 58 LAACAARYYGAPDAA---HVLPVAGSQAAIRAL-PALLPRGR-VGIAPLAYSEYAP--------AFARHGH--RVVPLDE 122 (339)
T ss_pred HHHHHHHHhCCCCcc---cEEECcCHHHHHHHH-HHhcCCCe-EEEcCCCcHHHHH--------HHHHCCC--EEEeecc
Confidence 355688999997421 577788876 66544 45678887 7777776655422 2344565 4445444
Q ss_pred cCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHH---HHHHcCCEEEEeccccccccccCCccCCC-CCC
Q 018300 232 DESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQ---IADAVGALLMMDMAHISGLVAASVVADPF-KYC 305 (358)
Q Consensus 232 ~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~---ia~e~g~~livD~Ah~~Gl~~~g~~~~pl-~ga 305 (358)
++ +.+++ ..+++++..++|| ...+.+++.+ .|++++.++++|+++. .+...... ..+ +.-
T Consensus 123 ~~-------~~~~~-----~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~-~~~~~~s~-~~~~~~~ 188 (339)
T PRK06959 123 AA-------DTLPA-----ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFA-DTLPAASL-AAHTDRP 188 (339)
T ss_pred cc-------hhccc-----cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCc-cCCCcccc-hhccCCC
Confidence 31 22221 3456666556665 4666555554 4667899999999976 33211100 011 111
Q ss_pred -cEEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 306 -DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 306 -Div~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
=+++.|++|.+ +|.|-|++++++ ++.+++...
T Consensus 189 ~vi~l~SfSK~~gl~GlRiGy~v~~~------~li~~l~~~ 223 (339)
T PRK06959 189 GLVVLRSVGKFFGLAGVRAGFVLAAP------ALLAALRDA 223 (339)
T ss_pred CEEEEecChhhcCCcchheEEEecCH------HHHHHHHHh
Confidence 27789999986 678889999976 566666554
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.1e-08 Score=96.99 Aligned_cols=198 Identities=19% Similarity=0.133 Sum_probs=113.6
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc----
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all---- 189 (358)
-+|.|.+|+.+.+..-... +..+ .++.. + ...++++++++.+. .++++||++|+..++....
T Consensus 56 ~~p~v~~A~~~~~~~~~~~---~~~~--~~~~~---~-~la~~l~~~~~~~~-----v~~~~sGseA~e~Alk~ar~~~~ 121 (406)
T PRK12381 56 AHPALREALNEQASKFWHT---GNGY--TNEPV---L-RLAKKLIDATFADR-----VFFCNSGAEANEAALKLARKYAH 121 (406)
T ss_pred CCHHHHHHHHHHHhhcccc---cCcc--CCHHH---H-HHHHHHHhhCCCCe-----EEEcCCcHHHHHHHHHHHHHHHh
Confidence 3788888888776532111 1111 12222 2 24456777776543 4667899999999997641
Q ss_pred ----cCCCEEEecCCCCCcccccccccchhccccCCce-EEEEeceecC---CCCCCCHHHHHHHhhhcCCeEEEEcCCC
Q 018300 190 ----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDE---STGLVDYDMLEKTAILFRPKLIIAGASA 261 (358)
Q Consensus 190 ----~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~~~~~~~~---~~~~iD~d~le~~i~~~~~klIi~~~s~ 261 (358)
.+.++|+..+..|.|... + .+...+.. +..-.-++.+ .....|++++++.+.. ++++|++++..
T Consensus 122 ~~~~~~r~~ii~~~~~yHG~t~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~aaviiEPv~ 193 (406)
T PRK12381 122 DRYGSHKSGIVAFKNAFHGRTL-F------TVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDD-QTCAVIVEPIQ 193 (406)
T ss_pred hcCCCCCCeEEEECCCcCCcch-h------HHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccC-CeeEEEEeCCc
Confidence 245678887654433211 0 11222210 0000000000 0113588999998863 67888886432
Q ss_pred -C-CC----CCCHHHHHHHHHHcCCEEEEeccccccccccCCccC--CCC-CCcEEEEcCcCcC-ccCcEEEEEEeCCCC
Q 018300 262 -Y-PR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKSL-RGPRGGMIFFKKDPV 331 (358)
Q Consensus 262 -~-~~----~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~--pl~-gaDiv~~S~hK~L-~Gp~GG~I~~~~~~~ 331 (358)
. +. ...+++|+++|++||+++|+|++| .|+...|.... .++ ..|++ |+.|.| +|.+.|++++++
T Consensus 194 ~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~-tG~gr~G~~~~~~~~~v~pDi~--t~sK~l~gG~~ig~~~~~~--- 267 (406)
T PRK12381 194 GEGGVIPADKAFLQGLRELCDRHNALLIFDEVQ-TGVGRTGELYAYMHYGVTPDVL--TTAKALGGGFPIGAMLTTE--- 267 (406)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchh-hCCCCCcchhhhHhhCCCCCEE--EehhhhhCCCceEEEEEcH---
Confidence 1 21 234899999999999999999998 46644443211 112 35664 667999 566778888876
Q ss_pred chhHHHHHHhh
Q 018300 332 LGVELESAINN 342 (358)
Q Consensus 332 ~~~~~~~~i~~ 342 (358)
++.+.+..
T Consensus 268 ---~~~~~~~~ 275 (406)
T PRK12381 268 ---KCASVMTV 275 (406)
T ss_pred ---HHHhhcCC
Confidence 56665543
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-07 Score=94.10 Aligned_cols=190 Identities=17% Similarity=0.143 Sum_probs=106.2
Q ss_pred cHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc-----
Q 018300 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----- 189 (358)
Q Consensus 115 s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all----- 189 (358)
+|.|.+++.+.+.. ...++. .++ + +.+....+++.+..+.+. .++++||++|+..++....
T Consensus 54 ~p~v~~a~~~q~~~-~~~~~~--~~~--~----~~~~~la~~l~~~~~~~~-----v~f~~SGseA~e~Aik~ar~~~~~ 119 (395)
T PRK03715 54 NPGMVEALAAQAEK-LINPSP--AFY--N----EPMAKLAGLLTQHSCFDK-----VFFANSGAEANEGAIKLARKWGRK 119 (395)
T ss_pred CHHHHHHHHHHHHh-cccccc--ccc--C----HHHHHHHHHHhhccCCCE-----EEEeCCcHHHHHHHHHHHHHHhhc
Confidence 67788777766543 211111 111 1 233334455555544332 4678899999999997763
Q ss_pred -cCC-CEEEecCCCCCcccccccccchhccccCCce-EEEEeceecCC---CCCCCHHHHHHHhhhcCCeEEEEcCCC--
Q 018300 190 -KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDES---TGLVDYDMLEKTAILFRPKLIIAGASA-- 261 (358)
Q Consensus 190 -~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~~~~~~~~~---~~~iD~d~le~~i~~~~~klIi~~~s~-- 261 (358)
++| ++|+..+..+ |++... .+...+.. ++....+..+. ....|++++++.+.+ ++.+|++++..
T Consensus 120 ~~~~r~~ii~~~~~y-----HG~t~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~aavi~Epv~~~ 191 (395)
T PRK03715 120 HKNGAYEIITFDHSF-----HGRTLA--TMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITD-KTVAVMLEPVQGE 191 (395)
T ss_pred cCCCCcEEEEECCCc-----CCChHH--HHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCC-CceEEEEeCCcCC
Confidence 133 5677766433 222111 12222211 11000001100 113578899988753 57788887532
Q ss_pred CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcCcCcCcc-CcEEEEEEeCC
Q 018300 262 YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKD 329 (358)
Q Consensus 262 ~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~hK~L~G-p~GG~I~~~~~ 329 (358)
.|...+ +++|.++|+++|+++|+|++|+ |+.-.|.. . .-++ ..|+++++ |.|+| -..|.++++++
T Consensus 192 gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G~GRtG~~~a~~~~gv~PDi~t~g--K~lg~G~p~~av~~~~~ 264 (395)
T PRK03715 192 GGVIPATREFMQQLRALTKQHGLLLIVDEVQT-GCGRTGTLFAYELSGIEPDIMTLG--KGIGGGVPLAALLAKAE 264 (395)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCCCcchhhHhhcCCCCceeeeh--hhhhCCcceEEEEEccc
Confidence 233444 8999999999999999999998 65333331 1 1122 46887664 99965 23566677664
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.9e-07 Score=89.88 Aligned_cols=165 Identities=18% Similarity=0.162 Sum_probs=109.6
Q ss_pred eEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCC-CCCHHHHHHHhhh
Q 018300 171 NVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG-LVDYDMLEKTAIL 249 (358)
Q Consensus 171 ~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~iD~d~le~~i~~ 249 (358)
.|....+|.||.++...|..|||..+++.|-|+|.-.+. --..| ++++|+.+..+++ .|+.+++|+.+..
T Consensus 149 ~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl-------~~rTg--veivpv~c~Ss~~f~itv~alE~A~~~ 219 (471)
T KOG0256|consen 149 VVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDL-------RWRTG--VEIVPVHCSSSNGFQITVEALEAALNQ 219 (471)
T ss_pred eEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccc-------eeccC--ceEEEEEeecCCCccccHHHHHHHHHH
Confidence 455667778999999999999999999999888753211 11345 4667776766555 8999999887643
Q ss_pred -----cCCe-EEEEcCCC-CCCCCC---HHHHHHHHHHcCCEEEEeccccccccccCC-ccCCCC-------CCc--EEE
Q 018300 250 -----FRPK-LIIAGASA-YPRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK-------YCD--VVT 309 (358)
Q Consensus 250 -----~~~k-lIi~~~s~-~~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~~pl~-------gaD--iv~ 309 (358)
.+.| +|+++++| .|...+ +..+..+|.++++-||+|+.++ |-+++.. +.+-++ .-| -++
T Consensus 220 A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya-~sVF~~~~F~Sv~ev~~~~~~~~~rvHiv 298 (471)
T KOG0256|consen 220 ARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYA-GSVFDKSEFRSVLEVRKDPHLDPDRVHIV 298 (471)
T ss_pred HHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhc-ccccCccCceEHHHHhhccccCCCcEEEE
Confidence 2455 45556554 355554 6677789999999999999865 4444322 211111 111 345
Q ss_pred EcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhhccCCcccc
Q 018300 310 TTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQV 350 (358)
Q Consensus 310 ~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~~~f~g~q~ 350 (358)
-|++|-| +|.|-|+|++.++ ++..........+..+
T Consensus 299 yslSKD~GlpGfRvGviYS~ne-----~VvsaA~kmssf~~vS 336 (471)
T KOG0256|consen 299 YSLSKDFGLPGFRVGVIYSNNE-----DVVSAATKMSSFGLVS 336 (471)
T ss_pred EEeccccCCCceEEEEEEecCh-----HHHHHHHHHhhccCCc
Confidence 6888885 6778899999987 6666555544444433
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-07 Score=93.78 Aligned_cols=195 Identities=17% Similarity=0.066 Sum_probs=105.2
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--cc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~ 190 (358)
.-+|.|.+++...+.. ...+..+. + .++ .+....+++++++.-..+ ..++.+||++|+..++... ..
T Consensus 59 h~~p~v~~a~~~q~~~-~~~~~~~~-~--~~~----~~~~la~~L~~~~~~~~~---~v~f~~SGseA~e~AlklAr~~t 127 (433)
T PRK08117 59 HRHPKVVQAIKEQADK-LMHGPSGV-I--YYE----SILKLAEELAEITPGGLD---CFFFSNSGAEAIEGALKLAKHVT 127 (433)
T ss_pred CCCHHHHHHHHHHHHh-ccCccccc-c--CCH----HHHHHHHHHHHhCCCCCC---EEEEeCcHHHHHHHHHHHHHHhc
Confidence 3578888888876643 22221111 1 122 222345567778732221 2355689999999999753 22
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCC-------------ceEEEEeceec---CCC---C---CCCHHHHHHHhh
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-------------IYFESMPYRLD---EST---G---LVDYDMLEKTAI 248 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-------------~~~~~~~~~~~---~~~---~---~iD~d~le~~i~ 248 (358)
...+|+..+-.| ||+... .+...+ ..+..++++-. +.. . .-|+++++++++
T Consensus 128 gr~~ii~~~~~y-----HG~t~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 200 (433)
T PRK08117 128 KRPYIISFTGCF-----HGRTLG--ALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFK 200 (433)
T ss_pred CCCeEEEECCCc-----CCcCHH--HHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHH
Confidence 335677765322 332110 000110 00112222110 000 0 125667777664
Q ss_pred h----cCCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCc
Q 018300 249 L----FRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKS 315 (358)
Q Consensus 249 ~----~~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~ 315 (358)
. .++..|++++- ..|...+ +++++++|++||+++|+|++|. |+...|... ..++ -.|+ .++.|.
T Consensus 201 ~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G~gr~G~~~~~~~~gv~pDi--~t~sK~ 277 (433)
T PRK08117 201 HQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQT-GFGRTGEWFAAQTFGVVPDI--MTIAKG 277 (433)
T ss_pred hccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-ccCccccchhHhhcCCCCCE--eehhhh
Confidence 2 23556777642 2344455 9999999999999999999998 764444211 1122 3466 477799
Q ss_pred Cc-cCcEEEEEEeC
Q 018300 316 LR-GPRGGMIFFKK 328 (358)
Q Consensus 316 L~-Gp~GG~I~~~~ 328 (358)
|+ |.+.|++++++
T Consensus 278 lg~G~pigav~~~~ 291 (433)
T PRK08117 278 IASGLPLSAVVASK 291 (433)
T ss_pred ccCCCcceeEEEcH
Confidence 95 45667888876
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-07 Score=97.12 Aligned_cols=151 Identities=21% Similarity=0.247 Sum_probs=106.4
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCHH---HHHHHHHHhc-cCCC----EEEecCCCCCcccccccccchhccccCCceE
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGSP---ANFEVYTAIL-KPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF 224 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt~---A~~~a~~all-~pGD----~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~ 224 (358)
.+++++++.|.|. ..++++||.+ |-..++++++ .+|+ ..+++-..||-++. .+.+.|-
T Consensus 587 Le~~Lc~iTG~D~----~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPA--------SA~Magm-- 652 (1001)
T KOG2040|consen 587 LEKDLCEITGFDS----FSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPA--------SAAMAGM-- 652 (1001)
T ss_pred HHHHhheeecccc----eeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChh--------hHHhcCC--
Confidence 4667899999987 5789999986 5555667763 4454 34555555655433 2345564
Q ss_pred EEEeceecCCCCCCCHHHHHHHhhhcCCe--EEEEc-CCCCCC-CCCHHHHHHHHHHcCCEEEEeccccccccccCCccC
Q 018300 225 ESMPYRLDESTGLVDYDMLEKTAILFRPK--LIIAG-ASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300 (358)
Q Consensus 225 ~~~~~~~~~~~~~iD~d~le~~i~~~~~k--lIi~~-~s~~~~-~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~ 300 (358)
++++++.+ .+|.||+.+|++++++++-+ .+.+. +|.+|. ..++++++++.+++|--|..|+|....-++ +..
T Consensus 653 kvvpV~~~-~~G~id~~dLk~kaekh~~~Laa~MvTYPST~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVG---lc~ 728 (1001)
T KOG2040|consen 653 KVVPVGCD-ANGNIDMVDLKAKAEKHKDNLAALMVTYPSTHGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVG---LCR 728 (1001)
T ss_pred EEEEeecc-CCCCccHHHHHHHHHHhhhhhheeEEecccccccccccHHHHHHHHHhcCCEEEecCCCccceec---ccC
Confidence 66777777 47899999999988776433 34444 455664 678999999999999999999987643321 235
Q ss_pred CCC-CCcEEEEcCcCcCccCcE
Q 018300 301 PFK-YCDVVTTTTHKSLRGPRG 321 (358)
Q Consensus 301 pl~-gaDiv~~S~hK~L~Gp~G 321 (358)
|-+ |+|++-..+||+|+-|.|
T Consensus 729 pGd~GaDV~HLNLHKTFcIPHG 750 (1001)
T KOG2040|consen 729 PGDIGADVCHLNLHKTFCIPHG 750 (1001)
T ss_pred CccccccceeecccceeeecCC
Confidence 556 999999999999955543
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.1e-07 Score=92.25 Aligned_cols=191 Identities=18% Similarity=0.152 Sum_probs=107.1
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc---
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~--- 190 (358)
-+|.|.+++.+.+.. +..+. ..+. ++...+ ..++++++++.+. .++.+||++|+..++.....
T Consensus 92 ~~p~v~~ai~~ql~~-~~~~~--~~~~--~~~~~~----la~~L~~~~~~~~-----~~f~~SGseA~e~AlklAr~~~~ 157 (474)
T PLN02624 92 CHPKIIKALTEQAEK-LTLSS--RAFY--NDKFPE----FAEYLTSMFGYDM-----VLPMNTGAEGVETAIKLARKWGY 157 (474)
T ss_pred CCHHHHHHHHHHHHh-cCCcc--cccC--CHHHHH----HHHHHHhhcCCCe-----EEEeCChHHHHHHHHHHHHHHHH
Confidence 389999999887754 32221 1221 222222 3455778887543 36678999999999863321
Q ss_pred -----C-CC-EEEecCCCCCcccccccccchhccccCCceEEEEec-eecCCC---CCCCHHHHHHHhhhc--CCeEEEE
Q 018300 191 -----P-HD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDEST---GLVDYDMLEKTAILF--RPKLIIA 257 (358)
Q Consensus 191 -----p-GD-~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~-~~~~~~---~~iD~d~le~~i~~~--~~klIi~ 257 (358)
+ |+ +|+... +++ ||.... .+...+.......+ +..+.. ...|++.+++.++.. ++++|++
T Consensus 158 ~~~g~~~~~~~ii~~~---~~y--HG~t~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiii 230 (474)
T PLN02624 158 EKKGIPKNEAIIVSCC---GCF--HGRTLA--AISMSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLF 230 (474)
T ss_pred hhcCCCCCCcEEEEEC---CCc--CCCCHH--HhhcCCCccccccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEE
Confidence 2 33 455543 222 332110 11121110000000 000000 013778898887542 4567888
Q ss_pred cCCC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-cCC-CC-CCcEEEEcCcCcCcc--CcEEEEEE
Q 018300 258 GASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADP-FK-YCDVVTTTTHKSLRG--PRGGMIFF 326 (358)
Q Consensus 258 ~~s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~~p-l~-gaDiv~~S~hK~L~G--p~GG~I~~ 326 (358)
++.. .|...+ +++|.++|++||+++++|++|. |+...|.. ... .+ ..|++++| |.++| .+.|+++.
T Consensus 231 Epv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~t-G~GrtG~~~a~~~~~i~pDiv~ls--K~lggG~~pigav~~ 307 (474)
T PLN02624 231 EPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQT-GLARTGKMLACDWEEVRPDVVILG--KALGGGVIPVSAVLA 307 (474)
T ss_pred CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CcCcCcchhhHHhcCCCCCEEEec--ccccCCCCcceeeee
Confidence 7544 344444 9999999999999999999997 65333321 111 12 46888764 99865 36678887
Q ss_pred eC
Q 018300 327 KK 328 (358)
Q Consensus 327 ~~ 328 (358)
++
T Consensus 308 ~~ 309 (474)
T PLN02624 308 DK 309 (474)
T ss_pred cH
Confidence 76
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.9e-07 Score=90.05 Aligned_cols=188 Identities=18% Similarity=0.153 Sum_probs=108.7
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-ccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~pG 192 (358)
-+|.|.+++.+.+.+-.. .+..| . ++. .++ ..++++++++.+. .++.+|||+|+.+++... ..+|
T Consensus 41 ~~p~v~~ai~~ql~~~~~---~~~~~-~-~~~---~~~-la~~l~~~~~~~~-----v~~~~SGseA~e~Alklar~~~g 106 (364)
T PRK04013 41 NHPEWVEEMSEQLEKLVV---AGPMF-E-HEE---KEE-MLEELSKWVNYEY-----VYMGNSGTEAVEAALKFARLYTG 106 (364)
T ss_pred CCHHHHHHHHHHHHhcCC---ccCCc-C-CHH---HHH-HHHHHHhhcCCCE-----EEEeCchHHHHHHHHHHHHHHhC
Confidence 468888888776654221 11112 1 232 222 3455777776543 366789999999999865 3345
Q ss_pred -CEEEecCCCCCcccccccccchhccccCCc-----eEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--CC-
Q 018300 193 -DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-----YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA--YP- 263 (358)
Q Consensus 193 -D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~--~~- 263 (358)
++|++.+..|.|.-. + .+...+. .+.....++.. ....|.+++++.+.. +++.|++.+.. .|
T Consensus 107 r~~Ii~~~~syHG~t~-~------~ls~~~~~~~~~~~~p~~~~~~~-~~~~d~~~l~~~i~~-~~aAvivEpi~g~gG~ 177 (364)
T PRK04013 107 RKEIIAMTNAFHGRTM-G------ALSATWKPKYREDFEPLVPGFKH-IPFNDVEAAKEAITK-ETAAVIFEPIQGEGGI 177 (364)
T ss_pred CCEEEEECCccccCch-h------hccCCCCcccccCCCCCCCCcEE-ecCCCHHHHHHHhcC-CcEEEEEcCCcCCCCC
Confidence 899988754433211 0 1111110 01111001110 012377888888753 67888876532 12
Q ss_pred CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCcc-CcEEEEEEeC
Q 018300 264 RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKK 328 (358)
Q Consensus 264 ~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~G-p~GG~I~~~~ 328 (358)
...| ++++.++|+++|+++|.|+.|+ |+ -.|..- .-++ ..|++++ .|.|+| -.-+.++.+.
T Consensus 178 ~~~~~~yl~~lr~lc~~~gillI~DEv~t-G~-RtG~~~a~~~~gv~PDiv~~--gK~lggG~P~~a~~~~~ 245 (364)
T PRK04013 178 VPAKEEFVKTLRDLTEDVGALLIADEVQS-GL-RTGKFLAIEHYKVEPDIVTM--GKGIGNGVPVSLTLTNF 245 (364)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEechhh-cC-CCCchhHHHhcCCCCCEEEe--cccccCCceeEEEEecc
Confidence 2445 8999999999999999999987 66 344321 1123 5688877 599854 2345555655
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.4e-07 Score=88.01 Aligned_cols=153 Identities=16% Similarity=0.113 Sum_probs=90.9
Q ss_pred eEEeCCCHHHHHHHHHHh--ccCCCEEEecCCCCCcccccccccchhccccCCce-----EEEEeceecCCCCCCCHHHH
Q 018300 171 NVQPLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----FESMPYRLDESTGLVDYDML 243 (358)
Q Consensus 171 ~V~~~SGt~A~~~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~iD~d~l 243 (358)
.+++.|||+|+..++... ..++++|++.+..+.|.... .+...+.. +......+. .....|++++
T Consensus 87 ~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~dl~~l 158 (375)
T PRK04260 87 AFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFG-------SMSATGQDKIKDGFGDGVPHFS-YAIFNDLNSV 158 (375)
T ss_pred EEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHH-------HHhccCCcccCCCCCCCCCCeE-EeCCCCHHHH
Confidence 356789999999888765 34567888876543332110 11111110 000000000 0013488999
Q ss_pred HHHhhhcCCeEEEEcCCC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCccC--CCC-CCcEEEEcCcC
Q 018300 244 EKTAILFRPKLIIAGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHK 314 (358)
Q Consensus 244 e~~i~~~~~klIi~~~s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~--pl~-gaDiv~~S~hK 314 (358)
++.+.. ++.+|++.+.+ .|...+ ++++.++|+++|+++++|++|. |+...|.... -.. .-|++ |++|
T Consensus 159 ~~~l~~-~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~-g~g~~g~~~~~~~~~~~pdi~--t~sK 234 (375)
T PRK04260 159 KALVNK-NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQT-GMGRTGKLYAFEHYGIEPDIF--TLAK 234 (375)
T ss_pred HHhcCC-CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccchhhhHhhCCCCCEE--Eecc
Confidence 987753 56777776433 233322 8999999999999999999986 6544442211 111 34655 6789
Q ss_pred cCc-cCcEEEEEEeCCCCchhHHHHHHh
Q 018300 315 SLR-GPRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 315 ~L~-Gp~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
.|+ |.+.|++++++ ++.+.+.
T Consensus 235 ~l~~G~~ig~~~~~~------~~~~~~~ 256 (375)
T PRK04260 235 GLANGVPVGAMLAKS------SLGGAFG 256 (375)
T ss_pred cccCCcceEEEEEcH------HHHhhcC
Confidence 995 55789999886 4555554
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.5e-07 Score=88.06 Aligned_cols=191 Identities=19% Similarity=0.172 Sum_probs=107.2
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh---cc
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---LK 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al---l~ 190 (358)
-+|.+.+++..-...-+-. +.-|+ ++ ..++ ..+++.++.+ ..+ ..++++||++||.+++..- ..
T Consensus 59 ~hP~iv~al~~Q~~kl~h~---sn~~~--~~---~~~~-la~~L~~~s~-~~d---~vff~NSGaEA~EaAiKlARk~~~ 125 (404)
T COG4992 59 CHPALVEALKEQAEKLWHV---SNLFY--NE---PQAE-LAEKLVELSP-FAD---RVFFCNSGAEANEAALKLARKYTG 125 (404)
T ss_pred CCHHHHHHHHHHHHHhhhc---ccccC--Ch---HHHH-HHHHHHhhCc-ccc---EEEEcCCcHHHHHHHHHHHHHHcC
Confidence 4888888887754433311 11122 12 2333 3455777776 222 2467789999999999654 22
Q ss_pred -C-CCEEEecCCCCCcccccccccchhccccCCce-EEEEeceecCCC---CCCCHHHHHHHhhhcCCeEEEEcCCC--C
Q 018300 191 -P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAILFRPKLIIAGASA--Y 262 (358)
Q Consensus 191 -p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~iD~d~le~~i~~~~~klIi~~~s~--~ 262 (358)
| .-+|+.....+.|+ +.+ .++..+.. +.--..|+-+.. ..-|.+++++.+++ ++..|++++-- .
T Consensus 126 ~~~k~~Iia~~nsFHGR-T~g------alS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~-~taAvivEPIQGEg 197 (404)
T COG4992 126 DPEKSKIIAFENSFHGR-TLG------ALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDE-DTAAVIVEPIQGEG 197 (404)
T ss_pred CCCCcEEEEEcCCcCCc-cce------eeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhcc-CeEEEEEecccCCC
Confidence 2 23677765433232 111 22333321 111111222211 13488999999986 77788887532 3
Q ss_pred CCCC----CHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCcc-CcEEEEEEeC
Q 018300 263 PRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKK 328 (358)
Q Consensus 263 ~~~~----dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~G-p~GG~I~~~~ 328 (358)
|... -+++++++|++||+++|.|+.|. |+--.|.+. .-.. .-||++. -|.|+| -+-|.++.++
T Consensus 198 GV~~~~~~fl~~lr~lCd~~g~LLI~DEVQt-G~GRTGk~fA~e~~gV~PDI~tl--aK~LgGG~PigA~la~~ 268 (404)
T COG4992 198 GVIPAPPEFLKALRELCDEHGALLILDEVQT-GLGRTGKLFAYEHYGVEPDILTL--AKALGGGFPIGAMLATE 268 (404)
T ss_pred CCCCCCHHHHHHHHHHHHHhCeEEEEecccc-CCCccchHHHHHHhCCCCCEEEe--eccccCCccceeeEEch
Confidence 3322 27899999999999999999998 664444321 0111 3588754 499965 3445555544
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2e-06 Score=87.65 Aligned_cols=201 Identities=17% Similarity=0.157 Sum_probs=103.6
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCC-CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc--
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYG-GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL-- 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~-G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all-- 189 (358)
.-+|.|.+|+...+.. +..+. .++. .++.. ....++++++++...+ ..++++|||+|+.+++....
T Consensus 70 h~hp~v~~A~~~q~~~-~~~~~---~~~~~~~~~~----~~lae~L~~~~p~~~~---~v~f~~SGseA~e~AiklAr~~ 138 (460)
T PRK12403 70 YGRKDLAAAAARQMEQ-LPYYN---MFFHTTHPAV----IELSELLFSLLPGHYS---HAIYTNSGSEANEVLIRTVRRY 138 (460)
T ss_pred CCCHHHHHHHHHHHHh-CCCee---cccccCCHHH----HHHHHHHHHhCCCCcC---EEEEeCCcHHHHHHHHHHHHHH
Confidence 3478899998877653 22111 1222 22322 2244567788764322 24667899999999997652
Q ss_pred -----cCCCEEE-ecCCCCCcccccccccchhccccCCce-----------EEEEeceec--CCCC-------CCCHHHH
Q 018300 190 -----KPHDRIM-GLDLPHGGHLSHGFMTPKRRVSGTSIY-----------FESMPYRLD--ESTG-------LVDYDML 243 (358)
Q Consensus 190 -----~pGD~Vl-~~~~~~ggh~s~~~~~~~~~~~~~g~~-----------~~~~~~~~~--~~~~-------~iD~d~l 243 (358)
++++.++ ...-.| ||+.. ..+...+.. +..++++.. ...+ ..+++++
T Consensus 139 ~~~~g~~~r~~ii~~~~~y-----HG~t~--~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 211 (460)
T PRK12403 139 WQVLGKPQKKIMIGRWNGY-----HGSTL--AATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQL 211 (460)
T ss_pred HHhhCCCCCcEEEEECCCc-----CcccH--hhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHH
Confidence 2344444 333222 22211 011122110 111211110 0000 0113556
Q ss_pred HHHhhh---cCCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEc
Q 018300 244 EKTAIL---FRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTT 311 (358)
Q Consensus 244 e~~i~~---~~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S 311 (358)
++.+.. .++..|++++- ..|...+ ++++.++|++||+++|+|++|+ |+.-.|.. - .-++ ..|+++
T Consensus 212 e~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~t-GfGRtG~~~a~e~~gv~PDiv~-- 288 (460)
T PRK12403 212 EEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIG-GFGRTGEWFAHEHFGFEPDTLS-- 288 (460)
T ss_pred HHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCchhhhhhhcCCCCCeEE--
Confidence 555532 23456777642 2344444 9999999999999999999995 54222321 1 1122 458886
Q ss_pred CcCcCc-c--CcEEEEEEeCCCCchhHHHHHHh
Q 018300 312 THKSLR-G--PRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 312 ~hK~L~-G--p~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
+.|.|+ | |-||++ +++ ++.+.+.
T Consensus 289 ~gK~lggG~~Piga~v-~~~------~i~~~~~ 314 (460)
T PRK12403 289 IAKGLTSGYVPMGGLV-LSK------RIAEALV 314 (460)
T ss_pred EcccccccccceEEEE-ECH------HHHHHHh
Confidence 569986 3 445555 555 5555543
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-06 Score=85.18 Aligned_cols=216 Identities=18% Similarity=0.212 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHhh-hccccc-------ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHc
Q 018300 90 VCEIITKEKERQF-KSLELI-------ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF 161 (358)
Q Consensus 90 ~~~~i~~e~~~~~-~~i~li-------as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lf 161 (358)
+..+.+.-+...+ +.+||- ....+.=+.|.+|-...+....... |.+-+-...+.+.++ +-+|
T Consensus 13 IlgL~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~------Yl~i~G~~~f~~~~~---~llF 83 (396)
T COG1448 13 ILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKN------YLPIEGLPEFLEAVQ---KLLF 83 (396)
T ss_pred hhHHHHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccc------cCCcCCcHHHHHHHH---HHhc
Confidence 4466665555444 777775 3444566778887765554443322 333222233443332 3478
Q ss_pred CCCC-----CCCcceEEeCCCHHHHHHHHHHh--ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC
Q 018300 162 NLDE-----NKWGVNVQPLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES 234 (358)
Q Consensus 162 g~~~-----~~~~v~V~~~SGt~A~~~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~ 234 (358)
|.+. .-+ +.++..+||.|+..+..-+ ..|..+|.+++|..+-|.. ..+..|..++..+| .|.+
T Consensus 84 G~d~~~l~~~Rv-~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~--------If~~aGl~v~~Y~Y-yd~~ 153 (396)
T COG1448 84 GADSPALAEDRV-ATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKA--------IFEAAGLEVETYPY-YDAE 153 (396)
T ss_pred CCCcHHHHhhhH-hheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHH--------HHHhcCCceeeeec-cccc
Confidence 8552 222 4688999999988776544 5677789999998776632 12345665555554 4556
Q ss_pred CCCCCHHHHHHHhhhcCC-eEEEEc-CCCCCCCCC-----HHHHHHHHHHcCCEEEEeccccccccccCCccC--CCC--
Q 018300 235 TGLVDYDMLEKTAILFRP-KLIIAG-ASAYPRDFD-----YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-- 303 (358)
Q Consensus 235 ~~~iD~d~le~~i~~~~~-klIi~~-~s~~~~~~d-----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~--pl~-- 303 (358)
+..+|++.+-+.+..... .+|+++ ..++|+-.| |++|.++.++.|.+.+.|.|+ -|+-. |.... .+.
T Consensus 154 ~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AY-QGF~~-GleeDa~~lR~~ 231 (396)
T COG1448 154 TKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAY-QGFAD-GLEEDAYALRLF 231 (396)
T ss_pred cccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhh-hhhcc-chHHHHHHHHHH
Confidence 678999988777654333 355554 455665333 788999999999999999994 35432 21100 111
Q ss_pred ---CC-cEEEEcCcCcC--ccCcE-EEEEE
Q 018300 304 ---YC-DVVTTTTHKSL--RGPRG-GMIFF 326 (358)
Q Consensus 304 ---ga-Div~~S~hK~L--~Gp~G-G~I~~ 326 (358)
+- =+++.|++|+| .|-|. ++.+.
T Consensus 232 a~~~~~~lva~S~SKnfgLYgERVGa~~vv 261 (396)
T COG1448 232 AEVGPELLVASSFSKNFGLYGERVGALSVV 261 (396)
T ss_pred HHhCCcEEEEehhhhhhhhhhhccceeEEE
Confidence 22 37889999996 67775 44443
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.5e-07 Score=88.16 Aligned_cols=199 Identities=18% Similarity=0.123 Sum_probs=109.9
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh---c
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---L 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al---l 189 (358)
+-+|.|.+++.+.+..-. +.+..+ . ++. +....+++.+..+.+. ..+.+|||+|+..++... .
T Consensus 31 h~~p~v~~ai~~q~~~~~---~~~~~~-~-~~~----~~~la~~l~~~~~~~~-----v~f~~sGseA~e~AlklAr~~~ 96 (382)
T PLN00144 31 HGDPDWVKAVAEQAGTLA---HVSNVY-H-TIP----QVELAKRLVASSFADR-----VFFCNSGTEANEAAIKFARKYQ 96 (382)
T ss_pred CCCHHHHHHHHHHHHhcC---Cccccc-c-CHH----HHHHHHHHHhcCCCCe-----EEEeCCcHHHHHHHHHHHHHHH
Confidence 347888888887765321 111111 1 221 1223445666655432 356789999999998643 1
Q ss_pred c------C------CCEEEecCCCCCcccccccccchhccccCCce-EEEEeceecCCC---CCCCHHHHHHHhhhcCCe
Q 018300 190 K------P------HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAILFRPK 253 (358)
Q Consensus 190 ~------p------GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~iD~d~le~~i~~~~~k 253 (358)
. + ..+|+.....|.| +.. ......+.. ++....+..+.. ...|++++++.+...+++
T Consensus 97 ~~~~~~~~~~~~~~r~~ii~~~~~yHG-----~t~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~a 169 (382)
T PLN00144 97 RVRAPDKKDPAASSATEFVSFSNSFHG-----RTL--GALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTA 169 (382)
T ss_pred hccCCCCccccccccceEEEECCCccc-----ccH--HHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCCCeE
Confidence 1 1 2468877643323 210 011111110 000000000000 023789999887655678
Q ss_pred EEEEcCCCCC--C--CCC--HHHHHHHHHHcCCEEEEeccccccccccCCc-cC-CCC-CCcEEEEcCcCcCc-cCcEEE
Q 018300 254 LIIAGASAYP--R--DFD--YPRMRQIADAVGALLMMDMAHISGLVAASVV-AD-PFK-YCDVVTTTTHKSLR-GPRGGM 323 (358)
Q Consensus 254 lIi~~~s~~~--~--~~d--l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~~-pl~-gaDiv~~S~hK~L~-Gp~GG~ 323 (358)
+|++.+..++ . ... +++|.++|++||+++|+|++|. |+...|.. +. ..+ ..|++ ++.|.|. |-+.|+
T Consensus 170 avi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~t-g~gr~g~~~~~~~~~~~PDi~--t~sK~l~~G~pig~ 246 (382)
T PLN00144 170 AVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQC-GLGRTGYLWAHEAYGVEPDIM--TLAKPLAGGLPIGA 246 (382)
T ss_pred EEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchHhhhhhcCCCCCEE--EecccccCCcceEE
Confidence 8888754332 1 123 8899999999999999999986 55444432 11 122 45755 5569984 567788
Q ss_pred EEEeCCCCchhHHHHHHh
Q 018300 324 IFFKKDPVLGVELESAIN 341 (358)
Q Consensus 324 I~~~~~~~~~~~~~~~i~ 341 (358)
+++++ ++.+.+.
T Consensus 247 v~~~~------~~~~~~~ 258 (382)
T PLN00144 247 VLVTE------KVASAIN 258 (382)
T ss_pred EEEcH------HHHhccC
Confidence 88876 5655554
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-07 Score=91.79 Aligned_cols=152 Identities=20% Similarity=0.263 Sum_probs=85.0
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCC-HHHHHHHHHHh---ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEe
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP 228 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SG-t~A~~~a~~al---l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~ 228 (358)
.+..++++.|.+. +|.....| +.+-.+++++. -+++++|+++...|+.+... . .....+..++++.
T Consensus 115 ~Qs~i~eLTGmdv----aNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v---~---~t~a~~~g~~iv~ 184 (429)
T PF02347_consen 115 YQSMICELTGMDV----ANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAV---L---RTYAAPLGIEIVE 184 (429)
T ss_dssp HHHHHHHHHTSSE----E-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHH---H---HHHCCHCCEEEEE
T ss_pred HHHHHHHhhCCCc----cCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHH---H---HHhhhhCCeEEEE
Confidence 5667899999986 34555544 33333333333 23346999988655544321 0 0012233456666
Q ss_pred ceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCc
Q 018300 229 YRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD 306 (358)
Q Consensus 229 ~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaD 306 (358)
++.++ ++..| ..++..|++..++ +|...|+++|.+++|++|+++++ .+.-..+ +.+..|-+ |+|
T Consensus 185 ~~~~~-~~~~d---------~~~~a~v~vq~Pn~~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL---~~l~~Pge~GAD 250 (429)
T PF02347_consen 185 VPLDE-DGTTD---------DDDTAAVMVQNPNTFGVFEDIKEIADIAHAAGALVIV-GADPNAL---GGLKSPGEYGAD 250 (429)
T ss_dssp E-BBT-TCSB----------STTEEEEEEESS-TTSB--THHHHHHHHHHTT-EEEE-CGGCCGC---CTC--GGGGT-S
T ss_pred ecccc-cCCcc---------ccCeEEEEeecCCCCceEeeHHHHHHHHHHcCCEEEE-ecCHHHH---hCcCChhhcCcc
Confidence 66653 45555 2356667666555 68888999999999999999988 6544332 33445666 999
Q ss_pred EEEEcCcCcC------ccCcEEEEEEeCC
Q 018300 307 VVTTTTHKSL------RGPRGGMIFFKKD 329 (358)
Q Consensus 307 iv~~S~hK~L------~Gp~GG~I~~~~~ 329 (358)
|++++ ||+| +||..|++.++++
T Consensus 251 I~vg~-~Q~fg~p~~~GGP~~G~~a~~~~ 278 (429)
T PF02347_consen 251 IVVGE-HQTFGIPMGFGGPGAGFFAVRED 278 (429)
T ss_dssp EEEEC-CTTTT---CCC-S--EEEEE-GG
T ss_pred EEeeC-CCCCcccCCCCCCCeeeEEEhhh
Confidence 99666 8887 4566699999885
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.2e-07 Score=89.90 Aligned_cols=200 Identities=17% Similarity=0.117 Sum_probs=111.8
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc--c
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--K 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--~ 190 (358)
..+|.|.+++.+.+.+.. . ++...+ .+....+++.+++.- .+ ...+++||++|+..++.... .
T Consensus 66 h~~p~i~~a~~~~~~~~~--~-----~~~~~~----~~~~la~~L~~~~~~-~~---~v~~~~sGseA~e~Aik~a~~~~ 130 (426)
T PRK00062 66 HAHPEVVEAVIEAAEKGL--S-----FGAPTE----LEVELAELVIELVPS-IE---MVRMVNSGTEATMSAIRLARGYT 130 (426)
T ss_pred CCCHHHHHHHHHHHHhCC--c-----CCCCCH----HHHHHHHHHHHhCCC-CC---EEEEecCHHHHHHHHHHHHHHHh
Confidence 468889988887775421 1 111122 222345566666631 21 23567899999999998753 3
Q ss_pred CCCEEEecCCCCCcccccccccc--hhcc----ccCCceEEEE---eceecCCCCCCCHHHHHHHhhh--cCCeEEEEcC
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTP--KRRV----SGTSIYFESM---PYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGA 259 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~--~~~~----~~~g~~~~~~---~~~~~~~~~~iD~d~le~~i~~--~~~klIi~~~ 259 (358)
.+++|+..+..|.|+.. +.... .... ...+...... .+.+ ...|++++++.+.. .++.+|++++
T Consensus 131 g~~~ii~~~~~yHG~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~~~l~~~i~~~~~~~aaiivEp 205 (426)
T PRK00062 131 GRDKIIKFEGCYHGHAD-SLLVKAGSGAATLGLPDSPGVPEDFAKHTLTA----PYNDLEAVEELFEEYGDEIAAVIVEP 205 (426)
T ss_pred CCCeEEEEcCccCCchh-hhhhccCccccccCCCCCCCCCcccccceEEc----CCCCHHHHHHHHHhCCCcEEEEEEeC
Confidence 36788888765544310 00000 0000 0000000000 0001 12478899887753 2456777763
Q ss_pred --CCCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-cCCCC-CCcEEEEcCcCcCc-cCcEEEEEEeCCC
Q 018300 260 --SAYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDP 330 (358)
Q Consensus 260 --s~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~~pl~-gaDiv~~S~hK~L~-Gp~GG~I~~~~~~ 330 (358)
++.|...+ +++|.++|++||+++++|++|. |+..++.. ...++ ..|++ ++.|.|+ |.+.|++++++
T Consensus 206 v~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-G~r~g~~~~~~~~~~~pDi~--~~gK~l~~G~p~ga~~~~~-- 280 (426)
T PRK00062 206 VAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMT-GFRVALGGAQGYYGVTPDLT--TLGKIIGGGLPVGAFGGRR-- 280 (426)
T ss_pred CcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechh-ccccCCccHHHHhCCCcchH--hhhhHhhCCCcceeeeEHH--
Confidence 33455555 8999999999999999999997 66332211 11122 24654 5679985 44567777776
Q ss_pred CchhHHHHHHh
Q 018300 331 VLGVELESAIN 341 (358)
Q Consensus 331 ~~~~~~~~~i~ 341 (358)
++.+.++
T Consensus 281 ----~i~~~~~ 287 (426)
T PRK00062 281 ----EIMEQLA 287 (426)
T ss_pred ----HHHHhhc
Confidence 5666664
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.1e-06 Score=86.04 Aligned_cols=197 Identities=15% Similarity=0.089 Sum_probs=111.1
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~p 191 (358)
-+|.|.+++.+.+......+. .++ .+....+++.++++.+. ..+++|||+|+..++... ...
T Consensus 92 ~~p~i~~Av~~q~~~~~~~~~-------~~~----~~~~lAe~l~~~~~~~~-----v~F~nSGtEA~e~AlrlAR~~TG 155 (453)
T PRK07046 92 SPAPVARALAEQARRGLTTML-------PSE----DAAWVGEELARRFGLPY-----WQVATTATDANRFVLRWARAVTG 155 (453)
T ss_pred CCHHHHHHHHHHHHhCCCCCC-------CCH----HHHHHHHHHHHHhCCCE-----EEEECCHHHHHHHHHHHHHHhhC
Confidence 478899888877654322111 122 33335566777776443 356789999999998654 334
Q ss_pred CCEEEecCCCCCccccccccc--chhc---cccCCceE----EEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCC--
Q 018300 192 HDRIMGLDLPHGGHLSHGFMT--PKRR---VSGTSIYF----ESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS-- 260 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~--~~~~---~~~~g~~~----~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s-- 260 (358)
.++|+...-.|.|+....... .... ....+... ....++ .-|++.+++.+...+...|++++-
T Consensus 156 r~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~nd~~~l~~~l~~~~vAavi~EPi~g 229 (453)
T PRK07046 156 RPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVE------FNDLAALEAALADGDVAAVLAEPAMT 229 (453)
T ss_pred CCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeC------CCCHHHHHHHhCCCCeEEEEECCCCC
Confidence 567887764333321000000 0000 00001000 001111 237899998885445667787653
Q ss_pred CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCcCc-cCcEEEEEEeCCCCchh
Q 018300 261 AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGV 334 (358)
Q Consensus 261 ~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~-Gp~GG~I~~~~~~~~~~ 334 (358)
+.|...+ +++++++|+|+|+++|.|+.+.++.-.++ ...-++ ..|++++ -|.|+ |...|.+++++
T Consensus 230 ~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg-~~~~~gv~PDi~t~--gK~lggG~Pi~av~g~~------ 300 (453)
T PRK07046 230 NIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGG-YTRAHGLEPDFLVV--GKPIAGGVPCAVYGFSA------ 300 (453)
T ss_pred CCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcc-hhHHhCCCccceee--hhhhcCCCcceeeeehH------
Confidence 2232222 89999999999999999999873321122 111123 4688865 69985 44567777777
Q ss_pred HHHHHHh
Q 018300 335 ELESAIN 341 (358)
Q Consensus 335 ~~~~~i~ 341 (358)
++.+.+.
T Consensus 301 ~i~~~~~ 307 (453)
T PRK07046 301 ELAERAQ 307 (453)
T ss_pred HHHHHHh
Confidence 5666665
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-06 Score=86.47 Aligned_cols=194 Identities=15% Similarity=0.110 Sum_probs=100.8
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc---
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--- 189 (358)
+-+|.|.+++.+.+.+-. +.+..+ .++. .....+++.+++.... ...+.+||++|+..++....
T Consensus 56 h~~p~v~~ai~~q~~~~~---~~~~~~--~~~~----~~~la~~L~~~~~~~~----~v~f~~sGseA~e~AlklAr~~~ 122 (408)
T PRK04612 56 HNDPDLVAALTEQAGKLW---HTSNVF--YSAP----PLKLAEELVTASRFAE----KVFLCNSGTEANEAAIKLVRKWA 122 (408)
T ss_pred CCCHHHHHHHHHHHHhcc---cccccc--CCHH----HHHHHHHHHhhCCCCC----EEEEcCchHHHHHHHHHHHHHHH
Confidence 347778888776654321 111111 1221 1123445566653222 24567899999999986431
Q ss_pred ---c--C-CCEEEecCCCCCcccccccccchhccccCCce-----EEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEc
Q 018300 190 ---K--P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258 (358)
Q Consensus 190 ---~--p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~ 258 (358)
. + .++|+.....| ||.... .+...+.. +...+.++. .-...|.+.+++.+...++.+|++.
T Consensus 123 ~~~g~~~~r~~ii~~~~~y-----HG~t~~--~~s~~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~aavi~e 194 (408)
T PRK04612 123 SSQGRPADKRVIVTFRGSF-----HGRTLA--AVTATAQPKYQEGYEPLPGGFR-YVDFNDVEALEAAMAGGDVAAVMLE 194 (408)
T ss_pred HhhCCCCCCcEEEEECCCc-----CCccHH--HHHhcCCcccccCCCCCCCCce-EcCCCCHHHHHHhhCCCCEEEEEEC
Confidence 1 2 23688766433 332110 11111110 110000000 0012478889888754456677776
Q ss_pred CCC-CC-C-CC---CHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCcCc-cCcEEEEEEeC
Q 018300 259 ASA-YP-R-DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLR-GPRGGMIFFKK 328 (358)
Q Consensus 259 ~s~-~~-~-~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~-Gp~GG~I~~~~ 328 (358)
+.. .+ . .. -+++|.++|+++|+++|+|++|. |+...|....-.. +....+.++.|.|+ |.+-|++++++
T Consensus 195 P~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~a~~~~~~~pdi~t~~K~l~~G~piga~~~~~ 271 (408)
T PRK04612 195 PIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQC-GMGRTGTLFAHWQEQVTPDIVTLAKALGGGFPIGAMLAGP 271 (408)
T ss_pred CccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCchhhhhhcCCCCCEEEEcchhcCCCceEEEEECH
Confidence 533 22 2 22 28999999999999999999987 5543342111011 23333345579984 44567777765
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.1e-06 Score=84.03 Aligned_cols=201 Identities=14% Similarity=0.107 Sum_probs=108.7
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--cc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~ 190 (358)
+-+|.|.+++.+.+.+....+ + .++ ...+ ..+++.+++..... ...+.+||++|+..++... ..
T Consensus 69 h~~p~v~~ai~~q~~~~~~~~------~-~~~---~~~~-la~~L~~~~~~~~~---~v~f~~SGsEA~e~AiklAr~~t 134 (433)
T PRK00615 69 HSHPKICDAIQQGAERGTSYG------L-TSE---QEIL-FAEELFSYLGLEDH---KIRFVSSGTEATMTAVRLARGIT 134 (433)
T ss_pred CCCHHHHHHHHHHHHhCCCCC------C-CCH---HHHH-HHHHHHHhCCCCcC---EEEEeCchHHHHHHHHHHHHHhh
Confidence 347888888877665422111 1 122 1222 34556777754321 2456789999999998754 22
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCceEEE--Eec---eecCCC---CCCCHHHHHHHhhhc--CCeEEEEcCC
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES--MPY---RLDEST---GLVDYDMLEKTAILF--RPKLIIAGAS 260 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~--~~~---~~~~~~---~~iD~d~le~~i~~~--~~klIi~~~s 260 (358)
...+|+...-.|.|+-.... ..+...+..... ..+ +..+.. ..-|++++++.+... +..+|++++-
T Consensus 135 gr~~ii~~~~~yHG~td~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv 210 (433)
T PRK00615 135 GRSIIIKFLGCYHGHADTLL----QGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPI 210 (433)
T ss_pred CCCEEEEEcCccCCCCcccC----cccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCC
Confidence 33567776543333210000 011111100000 000 000000 123788888887543 3456777642
Q ss_pred --CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc--cCCCC-CCcEEEEcCcCcCc-cCcEEEEEEeCCC
Q 018300 261 --AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDP 330 (358)
Q Consensus 261 --~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~--~~pl~-gaDiv~~S~hK~L~-Gp~GG~I~~~~~~ 330 (358)
+.|...+ +++|.++|++||+++|+|++|. |+. .|.. ..-++ ..|+++ +.|.|+ |-.+|++++++
T Consensus 211 ~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~R-~G~~ga~~~~gv~PDi~~--~gK~lggG~p~~av~~~~-- 284 (433)
T PRK00615 211 CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GFR-VAQGGAAAIYHVKPDITV--YGKILGGGLPAAAVVAHK-- 284 (433)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-ccc-ccHhHHHHhcCCCCCeEE--EcccccCCcceeeeeecH--
Confidence 2333333 6799999999999999999995 762 2221 11122 468876 579996 44588888887
Q ss_pred CchhHHHHHHh
Q 018300 331 VLGVELESAIN 341 (358)
Q Consensus 331 ~~~~~~~~~i~ 341 (358)
++.+.+.
T Consensus 285 ----~i~~~~~ 291 (433)
T PRK00615 285 ----SIMDHLA 291 (433)
T ss_pred ----HHHhhhc
Confidence 5666553
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.9e-06 Score=83.78 Aligned_cols=204 Identities=15% Similarity=0.000 Sum_probs=107.3
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~p 191 (358)
-+|.+.+++...+.+.. +..... .+++ ...+ ..+++.+..+.+..+ ..++.+||++|+..++... ...
T Consensus 58 ~~~~i~~a~~~~~~~~~---~~~~~~-~~~~---~~~~-la~~l~~~~~~~~~~--~~~f~~sGsea~e~Alklar~~~~ 127 (425)
T PRK08088 58 LHPKVVAAVEAQLKKLS---HTCFQV-LAYE---PYLE-LCEKMNQKVPGDFAK--KTLLVTTGSEAVENAVKIARAATK 127 (425)
T ss_pred CCHHHHHHHHHHHhhCC---Cccccc-cCCH---HHHH-HHHHHHHhCCCCCCC--EEEEeCCcHHHHHHHHHHHHHHhC
Confidence 48888888877765321 111000 1122 1222 344566666643211 3467889999988887654 223
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCc-------------eEEEEeceecCCCCCC--CHHHHHHHhh----hcCC
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDESTGLV--DYDMLEKTAI----LFRP 252 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~i--D~d~le~~i~----~~~~ 252 (358)
..+|+..+..|.|... + .....+. .+...+++.+...... +++++++.+. ..+.
T Consensus 128 r~~iv~~~~~yHG~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 200 (425)
T PRK08088 128 RSGVIAFTGAYHGRTH-Y------TLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDI 200 (425)
T ss_pred CCeEEEECCccCCccH-H------HHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCce
Confidence 3456665544333211 0 0011110 0111222222111011 1456787765 1345
Q ss_pred eEEEEcCCC-C-CCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcC-ccCcEEE
Q 018300 253 KLIIAGASA-Y-PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL-RGPRGGM 323 (358)
Q Consensus 253 klIi~~~s~-~-~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L-~Gp~GG~ 323 (358)
.+|++++.. + +.... +++|.++|+++|+++|+|.+|. |+...+.. ..++ +.+.-+.|+.|.| +|.+.|+
T Consensus 201 aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~-g~g~~g~~-~~~~~~~~~pdi~s~sK~l~~G~rig~ 278 (425)
T PRK08088 201 AAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQT-GAGRTGTL-FAMEQMGVAADLTTFAKSIAGGFPLAG 278 (425)
T ss_pred EEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCcch-hHHhhcCCCCCEEEEeccccCCCccee
Confidence 677776432 2 22222 8899999999999999999987 54333321 1121 3222246778998 4567799
Q ss_pred EEEeCCCCchhHHHHHHhh
Q 018300 324 IFFKKDPVLGVELESAINN 342 (358)
Q Consensus 324 I~~~~~~~~~~~~~~~i~~ 342 (358)
+++++ ++.+.+..
T Consensus 279 v~~~~------~~~~~~~~ 291 (425)
T PRK08088 279 VTGRA------EVMDAIAP 291 (425)
T ss_pred eEecH------HHHhhcCC
Confidence 99876 56665544
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.5e-06 Score=85.85 Aligned_cols=200 Identities=19% Similarity=0.129 Sum_probs=107.2
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc----
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all---- 189 (358)
-+|.|.+++.+.+..-. ..... . + .++ .+....+++.+++....+ ...+.+||++|+..++....
T Consensus 59 ~~p~v~~ai~~q~~~~~-~~~~~-~-~-~~~----~~~~la~~l~~~~p~~~~---~v~f~~sGseA~e~A~klar~~~~ 127 (423)
T PRK05964 59 NHPYIDQAIREQLDRLD-HVIFA-G-F-THE----PAERLAQRLVALTPGGLD---HVFFSDSGSVAVEVALKMALQYWR 127 (423)
T ss_pred CCHHHHHHHHHHHhhCC-Ccccc-c-c-CCH----HHHHHHHHHHHhCCCCCC---EEEEeCCcHHHHHHHHHHHHHHHH
Confidence 47888888877664321 10000 0 1 122 222245567777642221 23567899999999987531
Q ss_pred ---cCC-CEEEecCCCCCcccccccccchhccccCCc------------eEEEEeceecCCCCCCCHHHHHHHhhhc--C
Q 018300 190 ---KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDESTGLVDYDMLEKTAILF--R 251 (358)
Q Consensus 190 ---~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~~iD~d~le~~i~~~--~ 251 (358)
++| .+|+.....|.|.- .+ .+...+. .+..++++.+ +....+++++++.+... +
T Consensus 128 ~~~~~~r~~ii~~~~~yHG~t-~~------~ls~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~l~~~l~~~~~~ 199 (423)
T PRK05964 128 NRGEPGRSRFLSLRGGYHGDT-IG------TMSVGDRGGMHALYTPLLFEQVTAPFPPD-GYEQATLDALEALLEKHAGE 199 (423)
T ss_pred hcCCCCCcEEEEEcCCcCCcc-HH------HHhcCCCccccccccCcCCCCEEeCCCcc-hhHHHHHHHHHHHHHhCCCc
Confidence 133 47887764433321 01 1111110 0122232211 00112377888877532 3
Q ss_pred CeEEEEcC--CC-CCCCC----CHHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcCcCcCccC--
Q 018300 252 PKLIIAGA--SA-YPRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRGP-- 319 (358)
Q Consensus 252 ~klIi~~~--s~-~~~~~----dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~hK~L~Gp-- 319 (358)
...|++++ .. .|... .+++|.++|++||+++|+|++|. |+...|.. . ...+ ..|+++++ |+|.|.
T Consensus 200 iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~gr~G~~~a~~~~~v~pDi~~~~--K~l~gG~~ 276 (423)
T PRK05964 200 IAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIAT-GFGRTGTLFACEQAGVSPDIMCLS--KGLTGGYL 276 (423)
T ss_pred EEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcCcchhHHHhcCCCCCeeeee--hhhhcCcc
Confidence 45677764 12 23322 38999999999999999999995 55333321 1 1122 46777654 999653
Q ss_pred cEEEEEEeCCCCchhHHHHHHh
Q 018300 320 RGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 320 ~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
+.|++++++ ++.+.+.
T Consensus 277 p~~av~~~~------~i~~~~~ 292 (423)
T PRK05964 277 PLAATLCTA------EIFEAFY 292 (423)
T ss_pred cceEEEEcH------HHHHhhh
Confidence 457777776 5666654
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.7e-06 Score=85.81 Aligned_cols=203 Identities=15% Similarity=0.079 Sum_probs=105.6
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC-CCCCCCcceEEeCCCHHHHHHHHHHhc--
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLSGSPANFEVYTAIL-- 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg-~~~~~~~v~V~~~SGt~A~~~a~~all-- 189 (358)
.-+|.|.+|+.+.+.. ....... +...++ .+....+++.+++. .+.+ ...+++||++|+.+++....
T Consensus 105 h~hp~v~~Av~~ql~~-~~~~~~~--~~~~~~----~~~~lae~L~~~~~~~~~~---~v~f~~SGsEA~e~AlKlAr~~ 174 (504)
T PLN02760 105 GSEPRLVAAATEQLNK-LPFYHSF--WNRTTK----PSLDLAKELLEMFTARKMG---KVFFTNSGSEANDTQVKLVWYY 174 (504)
T ss_pred CCCHHHHHHHHHHHhh-ccceecc--cccCcH----HHHHHHHHHHhhcCCCCCC---EEEEeCChHHHHHHHHHHHHHH
Confidence 3489999999887653 2111110 011222 22223455666653 3322 23567899999999997652
Q ss_pred -----cCC-CEEEecCCCCCcccccccccchhccccCCce------------EEEEeceec-----CCCC-----CCCHH
Q 018300 190 -----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY------------FESMPYRLD-----ESTG-----LVDYD 241 (358)
Q Consensus 190 -----~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~------------~~~~~~~~~-----~~~~-----~iD~d 241 (358)
.+| ++|+..+-.|.|.. .+ .+.+.+.. +...+++.. +... ...++
T Consensus 175 ~~~~g~~~r~~iI~~~~~yHG~t-~~------a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (504)
T PLN02760 175 NNALGRPNKKKFIARSKSYHGST-LI------SASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLAD 247 (504)
T ss_pred HHhcCCCCCcEEEEECCCccCCh-Hh------hhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHH
Confidence 133 57777764333321 00 11122210 111111100 0000 01124
Q ss_pred HHHHHhhh---cCCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEecccc-ccccccCCccCCCC-CCcEEEE
Q 018300 242 MLEKTAIL---FRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHI-SGLVAASVVADPFK-YCDVVTT 310 (358)
Q Consensus 242 ~le~~i~~---~~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~-~Gl~~~g~~~~pl~-gaDiv~~ 310 (358)
++++.+.. .++..|++++- ..|...+ +++|+++|++||+++|+|++|. +|-.+...-..-++ ..|++++
T Consensus 248 ~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl 327 (504)
T PLN02760 248 NLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSL 327 (504)
T ss_pred HHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEEe
Confidence 56666532 23456777642 2344455 9999999999999999999994 54433211001122 4687765
Q ss_pred cCcCcCcc---CcEEEEEEeCCCCchhHHHHHHh
Q 018300 311 TTHKSLRG---PRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 311 S~hK~L~G---p~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
.|.|+| |-|+ +++++ ++.+.+.
T Consensus 328 --gK~lggG~~PigA-v~~~~------~i~d~~~ 352 (504)
T PLN02760 328 --AKALSSAYMPIGA-VLVSP------EISDVIH 352 (504)
T ss_pred --cccccCCccccce-EeecH------HHHhhhh
Confidence 599965 5445 66665 5666554
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.48 E-value=5e-06 Score=90.30 Aligned_cols=151 Identities=17% Similarity=0.150 Sum_probs=95.7
Q ss_pred HHHHHHHHcCCCCCCCcceEEeC-CCHHHHHHHHHHh-c--cCCCEEEecCCCCCcccccccccchhccccCCceEEEEe
Q 018300 153 CQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYTAI-L--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP 228 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~-SGt~A~~~a~~al-l--~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~ 228 (358)
.+..++++.|.+.. |.... .+|.+..+++++. . +++++|++++..|..+... .. ..+...|. +++.
T Consensus 114 ~Qt~i~eLtGm~~a----NaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v---~~-t~a~~~g~--~v~~ 183 (939)
T TIGR00461 114 FQTVVSDLTGLPVA----NASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSV---LH-TRAKPFGI--EVIV 183 (939)
T ss_pred HHHHHHHHHCCChh----hhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHH---HH-HHHHhcCc--EEEE
Confidence 56779999999863 33333 4455555555554 2 3458999988655432211 00 01223343 4333
Q ss_pred ceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCc
Q 018300 229 YRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD 306 (358)
Q Consensus 229 ~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaD 306 (358)
+|+++|++.+ ++..+++..++ +|...|+++|.+++|++|++++++.-..+. ..+..|-+ |+|
T Consensus 184 ---------~~~~~l~~~~---~~~~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al----~ll~~Pge~GaD 247 (939)
T TIGR00461 184 ---------VDCSDIKKAV---DVFGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMAL----TLLTPPGHYGAD 247 (939)
T ss_pred ---------EcHHHHhhcC---CEEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHHh----CCcCCHHHcCCc
Confidence 2455666554 34456665555 677789999999999999999997644322 22334555 999
Q ss_pred EEEEcCcCc-----CccCcEEEEEEeCC
Q 018300 307 VVTTTTHKS-----LRGPRGGMIFFKKD 329 (358)
Q Consensus 307 iv~~S~hK~-----L~Gp~GG~I~~~~~ 329 (358)
|++++.+++ ++||..|++.++++
T Consensus 248 i~vg~~q~fg~p~g~GGP~aG~~a~~~~ 275 (939)
T TIGR00461 248 IVLGSSQRFGVPMGYGGPHAAFFAVKDE 275 (939)
T ss_pred EEeeCCCccCCCCCCCCCceeeeeecHh
Confidence 998887776 35888899999884
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1e-05 Score=76.45 Aligned_cols=212 Identities=17% Similarity=0.183 Sum_probs=117.9
Q ss_pred hcccccccCCC-CcHHHHHHHhhhhhcccCCCCCCC--cCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH
Q 018300 103 KSLELIASENF-TSRAVMEAVGSCLTNKYSEGLPGK--RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP 179 (358)
Q Consensus 103 ~~i~lias~n~-~s~~V~~al~~~l~~~~~~G~pg~--r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~ 179 (358)
.+..|..+-|+ .-|++.+........--++|.-+. -.|.|.+-.+.+-+.....+.+.+|-+-.+ -|+..++||+
T Consensus 30 ~g~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~--~NIalTnGSQ 107 (417)
T COG3977 30 PGAIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITA--QNIALTNGSQ 107 (417)
T ss_pred CCceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCcc--ceeeecCCcc
Confidence 44555555554 356666555444333323331110 123333333344444455567777776432 3788899997
Q ss_pred -HHHHHHHHh---ccCCC--EEEe-cCCCCCcccccccccchhccccCCceEEEEe-ceecCCC---CCCCHHHHHHHhh
Q 018300 180 -ANFEVYTAI---LKPHD--RIMG-LDLPHGGHLSHGFMTPKRRVSGTSIYFESMP-YRLDEST---GLVDYDMLEKTAI 248 (358)
Q Consensus 180 -A~~~a~~al---l~pGD--~Vl~-~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~-~~~~~~~---~~iD~d~le~~i~ 248 (358)
|.+-++.-+ ...|+ +|+. +.|+|-|+-..+. .-...+...| +++.+.. ..+|+++|.-.
T Consensus 108 s~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l--------~~d~fVs~kP~iel~~~g~FKY~vDF~~l~i~-- 177 (417)
T COG3977 108 SAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGL--------EEDLFVSAKPNIELLPAGQFKYHVDFEHLHIG-- 177 (417)
T ss_pred chHHHHHHHhcCccCCCcceeEeeccChhhcccccccc--------CccceeeccCCcccccccceeeccCHHHcccc--
Confidence 666665544 33455 3544 3566666532111 0011111111 2222221 26888887642
Q ss_pred hcCCeEEEEcCCCCCC-----CCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC---C-CcEEEEcCcCc-Ccc
Q 018300 249 LFRPKLIIAGASAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---Y-CDVVTTTTHKS-LRG 318 (358)
Q Consensus 249 ~~~~klIi~~~s~~~~-----~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~---g-aDiv~~S~hK~-L~G 318 (358)
..+.+|.++-+.+|+ ..++.+|.++|++||++++.|.|+..-+ .+...+... + --+.++|++|. |+|
T Consensus 178 -e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PF--P~iifsd~~~~w~~NiilC~SLSK~GLPG 254 (417)
T COG3977 178 -ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPF--PGIIFSDATPLWNENIILCMSLSKLGLPG 254 (417)
T ss_pred -cccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCC--CceecccccccCCCCEEEEeehhhcCCCC
Confidence 367788887776653 3347889999999999999999875322 221111111 2 23779999996 677
Q ss_pred CcEEEEEEeCC
Q 018300 319 PRGGMIFFKKD 329 (358)
Q Consensus 319 p~GG~I~~~~~ 329 (358)
-|-|+++.+++
T Consensus 255 ~R~GIiIane~ 265 (417)
T COG3977 255 SRCGIIIANEK 265 (417)
T ss_pred cceeEEEccHH
Confidence 78899999874
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.6e-05 Score=81.27 Aligned_cols=198 Identities=17% Similarity=0.119 Sum_probs=105.8
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~p 191 (358)
-+|.|.+++...+......+ ..++ .+.+..+++.+.+..-. ...+.+|||+|+..++... ...
T Consensus 116 ~~p~v~~av~~ql~~~~~~~-------~~~~----~~~~lAe~l~~~~p~~~----~v~f~~SGsEA~e~AlklAR~~tg 180 (474)
T PLN02482 116 ADDEVLAALAETMKKGTSFG-------APCL----LENVLAEMVIDAVPSVE----MVRFVNSGTEACMGVLRLARAYTG 180 (474)
T ss_pred CCHHHHHHHHHHHhhCCCCC-------CCCH----HHHHHHHHHHHhCCCCC----EEEEeCChHHHHHHHHHHHHHhcC
Confidence 37899999988775432111 1122 23334556677664211 2356789999999998654 223
Q ss_pred CCEEEecCCCCCcccc-cccccc--hhcc--c-cCCceE----EEEeceecCCCCCCCHHHHHHHhhhc--CCeEEEEcC
Q 018300 192 HDRIMGLDLPHGGHLS-HGFMTP--KRRV--S-GTSIYF----ESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGA 259 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s-~~~~~~--~~~~--~-~~g~~~----~~~~~~~~~~~~~iD~d~le~~i~~~--~~klIi~~~ 259 (358)
.++|+...-.|.|+-. ...... .... . ..+... ....++ .-|++++++.+..+ +...|++++
T Consensus 181 r~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~nd~~~l~~~l~~~~~~iAavI~Ep 254 (474)
T PLN02482 181 REKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAP------YNDLEAVKKLFEANKGEIAAVILEP 254 (474)
T ss_pred CCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEec------CCChHHHHHHHHhCCCceEEEEECC
Confidence 4678776543333210 000000 0000 0 000000 001111 12788999887643 345677764
Q ss_pred C--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-cCCCC-CCcEEEEcCcCcCcc-CcEEEEEEeCCC
Q 018300 260 S--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDP 330 (358)
Q Consensus 260 s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~~pl~-gaDiv~~S~hK~L~G-p~GG~I~~~~~~ 330 (358)
. +.|...+ ++++.++|++||+++|+|++|. |+..+... ..-++ ..|++++ .|.|+| ..-|.+++++
T Consensus 255 v~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-GfR~g~~ga~~~~gv~PDi~t~--gK~lggG~Pigav~g~~-- 329 (474)
T PLN02482 255 VVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GFRIAYGGAQEYFGITPDLTTL--GKVIGGGLPVGAYGGRR-- 329 (474)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CeecCcchHhHHhCCCCCEEEe--cchhhCCCceEEEEEcH--
Confidence 2 2233333 6789999999999999999995 76322111 11122 4688655 699965 2334457766
Q ss_pred CchhHHHHHHh
Q 018300 331 VLGVELESAIN 341 (358)
Q Consensus 331 ~~~~~~~~~i~ 341 (358)
++.+.+.
T Consensus 330 ----ei~~~~~ 336 (474)
T PLN02482 330 ----EIMEMVA 336 (474)
T ss_pred ----HHHHhhc
Confidence 5666554
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.3e-06 Score=82.70 Aligned_cols=200 Identities=18% Similarity=0.096 Sum_probs=106.9
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh---c
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---L 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al---l 189 (358)
.-+|.|.+|+...+..-. +. .+++. ++ ......+++++++....+ ...+++|||+|+..++... .
T Consensus 91 h~hp~v~~Av~~ql~~l~---~~-~~~~~-~~----~~~~lAe~L~~~~p~~~~---~v~f~~SGsEA~e~AlklAr~~t 158 (442)
T TIGR03372 91 HRNPNVIAAVENQLAKQP---LH-SQELL-DP----LRALLAKTLAALTPGKLK---YSFFCNSGTESVEAALKLAKAYQ 158 (442)
T ss_pred CCCHHHHHHHHHHHHhCC---Cc-ccccC-CH----HHHHHHHHHHHhCCCCcC---EEEEeCCchHHHHHHHHHHHHHH
Confidence 348889999887665321 11 12221 22 222345567777654322 2456789999999998643 1
Q ss_pred --cCCCEEEecCCCCCcccccccccchhccccCCce-EEEEeceecCCC---CCCCHHHHHHHhhh-----cCCeEEEEc
Q 018300 190 --KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAIL-----FRPKLIIAG 258 (358)
Q Consensus 190 --~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~iD~d~le~~i~~-----~~~klIi~~ 258 (358)
+...+|++....|.|. .. ..+..++.. ++....+..+.. ...|.+++++.++. .+...|+++
T Consensus 159 ~~~gr~~ii~~~~~yHG~-----t~--~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvE 231 (442)
T TIGR03372 159 SPRGKFTFIAASGAFHGK-----SL--GALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILE 231 (442)
T ss_pred hhcCCcEEEEECCCccCC-----CH--HHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1235788776433332 10 011222210 000000011000 12366777766642 234566765
Q ss_pred CC--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCccC--cEEEEEEe
Q 018300 259 AS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRGP--RGGMIFFK 327 (358)
Q Consensus 259 ~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~Gp--~GG~I~~~ 327 (358)
+- ..|...+ ++++.++|+++|+++|+|++|. |+.-.|... .-++ ..|+++ +.|.|+|- ..|.++++
T Consensus 232 pv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~t-G~GRtG~~~a~e~~gv~PDivt--~gK~lg~G~~Pigavv~~ 308 (442)
T TIGR03372 232 PIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQT-GMGRTGKMFACEHEGVQPDILC--LAKALGGGVMPIGATIAT 308 (442)
T ss_pred CccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeeccc-CCCccccchhhhhcCCCCCeee--ehhhhcCCcccceEEEec
Confidence 42 2344455 8999999999999999999995 543233221 1122 468886 56999642 34555566
Q ss_pred CCCCchhHHHHHH
Q 018300 328 KDPVLGVELESAI 340 (358)
Q Consensus 328 ~~~~~~~~~~~~i 340 (358)
+ ++.+.+
T Consensus 309 ~------~i~~~~ 315 (442)
T TIGR03372 309 E------AVFSVL 315 (442)
T ss_pred H------HHHHhh
Confidence 5 555555
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-05 Score=81.46 Aligned_cols=202 Identities=17% Similarity=0.087 Sum_probs=107.9
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--cc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~ 190 (358)
.-+|.|.+|+...+.... +....++ .++ .+....+++.+++....+ ...+++|||+|+..++... ..
T Consensus 57 h~~p~v~~Ai~~ql~~~~---~~~~~~~-~~~----~~~~la~~L~~~~p~~~~---~v~f~~sGsEAve~AlklAr~~t 125 (443)
T PRK08360 57 HNNPRVVKAIKEQTDKLI---HYTPIYG-FPV----EPLLLAEKLIEIAPGDNP---KVSFGLSGSDANDGAIKFARAYT 125 (443)
T ss_pred CCCHHHHHHHHHHHHhcc---Ccccccc-CcH----HHHHHHHHHHHhCCCCCC---EEEEcCCHHHHHHHHHHHHHHhc
Confidence 348888888877765421 1111111 122 122244557777754422 2356679999999998653 22
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCC------------ceEEEEeceecCC--CC-------CCCHHHHHHHhhh
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDES--TG-------LVDYDMLEKTAIL 249 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~~~~~~~~~--~~-------~iD~d~le~~i~~ 249 (358)
...+|+.....|.|.- .+ .....+ ..+..++++-... .. ..+.+.+++.++.
T Consensus 126 gr~~ii~~~~~yHG~t-~~------a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (443)
T PRK08360 126 KRRKILSYLRSYYGST-YG------AMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEG 198 (443)
T ss_pred CCCeEEEEeCCcCCcC-HH------HHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHh
Confidence 3456776553332210 00 011111 0112222221000 00 0223456666542
Q ss_pred ----cCCeEEEEcCCC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcC
Q 018300 250 ----FRPKLIIAGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL 316 (358)
Q Consensus 250 ----~~~klIi~~~s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L 316 (358)
.+++.|++++.. .|...+ +++|.++|+++|+++|+|++|. |+...|... ..++ ..|++++ .|.|
T Consensus 199 ~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~G~~~a~~~~~~~pDiitl--sK~l 275 (443)
T PRK08360 199 EVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQS-GLGRTGKWFAIEHFGVEPDIITL--GKPL 275 (443)
T ss_pred ccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCccchhhhhcCCCCCEEEe--cccc
Confidence 356788887532 232222 8999999999999999999987 543334321 1122 4577754 7998
Q ss_pred c-cCcEEEEEEeCCCCchhHHHHHHh
Q 018300 317 R-GPRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 317 ~-Gp~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
+ |.+.|++++++ ++.+.+.
T Consensus 276 ~~G~pigav~~~~------~i~~~~~ 295 (443)
T PRK08360 276 GGGLPISATIGRA------EIMDSLP 295 (443)
T ss_pred cCCceeEEEEEcH------HHHhhhc
Confidence 4 55778888876 5666554
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.8e-06 Score=82.96 Aligned_cols=202 Identities=19% Similarity=0.093 Sum_probs=104.4
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~p 191 (358)
-+|.|.+++...+..-. +....++ .++ .+..+.+++++++.....+ ...+.+||++|+..++... ...
T Consensus 59 ~~p~v~~Ai~~ql~~~~---~~~~~~~-~~~----~~~~lae~L~~~~p~~~~~--~v~f~~SGseA~e~AiklAr~~tg 128 (445)
T PRK08593 59 APPRVVEAIKAQADKFI---HYTPAYM-YHE----PLVRLAKKLCELAPGDFEK--RVTFGLSGSDANDGIIKFARAYTG 128 (445)
T ss_pred CCHHHHHHHHHHHHhcc---Ccccccc-CCH----HHHHHHHHHHHhCCCCCCC--EEEECCchHHHHHHHHHHHHHhhC
Confidence 47888888877664321 1111111 122 2222455677777533111 2345689999999998743 222
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCc-------------eEEEEeceecCC--CCCCC-------HHHHHHHhhh
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDES--TGLVD-------YDMLEKTAIL 249 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~--~~~iD-------~d~le~~i~~ 249 (358)
..+|+..+-.|.|.- .+ .+...+. .+..++++-... ....+ ++++++.+..
T Consensus 129 r~~ii~~~~~YHG~t-~~------als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (445)
T PRK08593 129 RPYIISFTNAYHGST-YG------SLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEK 201 (445)
T ss_pred CCeEEEECCCcCCCc-HH------HHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHh
Confidence 346777654333321 00 1111110 012222211000 00111 2445544432
Q ss_pred ----cCCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcC
Q 018300 250 ----FRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL 316 (358)
Q Consensus 250 ----~~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L 316 (358)
.+...|++++- +.|...+ +++|.++|++||+++|+|++|. |+...|... .-++ ..|+++ +.|.+
T Consensus 202 ~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~t-g~GrtG~~~a~~~~gv~pDi~t--~gK~l 278 (445)
T PRK08593 202 YLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQ-GLGRTGKWSSISHFNITPDLMS--FGKSL 278 (445)
T ss_pred hcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcCchHHHHHhcCCCCCEee--ecccc
Confidence 24567777653 2233333 8999999999999999999985 432223211 1122 357774 56998
Q ss_pred c-cCcEEEEEEeCCCCchhHHHHHHh
Q 018300 317 R-GPRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 317 ~-Gp~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
+ |.+.|++++++ ++.+.++
T Consensus 279 ~~G~p~gav~~~~------~i~~~~~ 298 (445)
T PRK08593 279 AGGMPMSAIVGRK------EIMESLE 298 (445)
T ss_pred cCCcccEEEEEcH------HHHhhhc
Confidence 6 45678888887 5666554
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-05 Score=82.47 Aligned_cols=192 Identities=17% Similarity=0.115 Sum_probs=101.7
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh---c-
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---L- 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al---l- 189 (358)
-+|.|.+|+.+.+..-. +. .+++. ++ ......+++++++....+ ...+.+|||+|+..++... .
T Consensus 99 ~~p~v~~Ai~~ql~~l~---~~-~~~~~-~~----~~~~lae~L~~~~p~~~~---~v~f~~SGsEAve~AlklAr~~t~ 166 (459)
T PRK11522 99 RNPVVVSAVQNQLAKQP---LH-SQELL-DP----LRAMLAKTLAALTPGKLK---YSFFCNSGTESVEAALKLAKAYQS 166 (459)
T ss_pred CCHHHHHHHHHHHhhCc---cc-ccccC-CH----HHHHHHHHHHHhCCCCCC---EEEEeCCchHHHHHHHHHHHHHhc
Confidence 47899999887765321 11 11221 22 222244556777643322 2456779999999998743 2
Q ss_pred cCC-CEEEecCCCCCcccccccccchhccccCCce-EEEEeceecCCCC---CCCHHHHHHHhhh-----cCCeEEEEcC
Q 018300 190 KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDESTG---LVDYDMLEKTAIL-----FRPKLIIAGA 259 (358)
Q Consensus 190 ~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~---~iD~d~le~~i~~-----~~~klIi~~~ 259 (358)
++| .+|+...-.| ||+.. ..+...+.. +..-..+..+... ..|.+++++.++. .++..|++++
T Consensus 167 ~~gr~~ii~~~~~y-----HG~t~--~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEp 239 (459)
T PRK11522 167 PRGKFTFIATSGAF-----HGKSL--GALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEP 239 (459)
T ss_pred cCCCcEEEEecCCC-----CCCcH--HHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEec
Confidence 123 3677765333 33210 011222210 0100001111111 2377888887753 1334666654
Q ss_pred C--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcCcCcCcc---CcEEEEEEe
Q 018300 260 S--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG---PRGGMIFFK 327 (358)
Q Consensus 260 s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~hK~L~G---p~GG~I~~~ 327 (358)
- ..|...+ ++++.++|++||+++|+|++|. |+.-.|.. - .-++ ..|++++ .|.|+| |-|+++ ++
T Consensus 240 v~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t-G~GRtG~~~a~e~~gv~PDivt~--gK~lggG~~Pigav~-~~ 315 (459)
T PRK11522 240 IQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQT-GMGRTGKMFACEHENVQPDILCL--AKALGGGVMPIGATI-AT 315 (459)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEecccee-cCCccchhhhhhccCCCCCEEEe--chhhhCCCccceeEE-Ec
Confidence 2 2344444 8999999999999999999996 65223321 1 1122 4588754 699965 445555 44
Q ss_pred C
Q 018300 328 K 328 (358)
Q Consensus 328 ~ 328 (358)
+
T Consensus 316 ~ 316 (459)
T PRK11522 316 E 316 (459)
T ss_pred H
Confidence 4
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-05 Score=80.81 Aligned_cols=195 Identities=17% Similarity=0.097 Sum_probs=103.6
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--cc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~ 190 (358)
.-+|.|.+++...+..-. +.....+ .++ ...+ ..+++.+++.-...+ ...+.+|||+|+..++... ..
T Consensus 56 h~~p~v~~ai~~ql~~l~---~~~~~~~-~~~---~~~~-la~~l~~~~p~~~~~--~v~f~~SGseA~e~AlklAr~~t 125 (425)
T PRK07495 56 HRHPRVIAAVKAQLDRFT---HTCHQVV-PYE---NYVR-LAERLNALVPGDFAK--KTIFVTTGAEAVENAVKIARAAT 125 (425)
T ss_pred CCCHHHHHHHHHHHhhcc---CcccCcc-CCH---HHHH-HHHHHHHhCCCCCCC--EEEECCchHHHHHHHHHHHHHhh
Confidence 457788888877665321 1110001 122 1222 455677776532111 2456789999999998743 23
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCC-------------ceEEEEeceecCCCCC---CCHHHHHHHhhh----c
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-------------IYFESMPYRLDESTGL---VDYDMLEKTAIL----F 250 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~---iD~d~le~~i~~----~ 250 (358)
...+|+...-.|.|.- .+ .....+ ..+..++++.+. .+. -+++++++.+.. .
T Consensus 126 gr~~ii~~~~~yHG~t-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~l~~~~~~~~~~~ 197 (425)
T PRK07495 126 GRSAVIAFGGGFHGRT-FM------GMSLTGKVVPYKVGFGAMMPDVYHVPFPVEL-HGVSVEQSLAALDKLFKADVDPQ 197 (425)
T ss_pred CCCeEEEECCCcCCcc-HH------HhhhcCCCcccccCCCCCCCCeEEecCCccc-ccccHHHHHHHHHHHHHhccCCC
Confidence 3457887664333321 00 000100 012223333221 111 124555666542 2
Q ss_pred CCeEEEEcCC--CCCCC-C---CHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCc-cCc
Q 018300 251 RPKLIIAGAS--AYPRD-F---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPR 320 (358)
Q Consensus 251 ~~klIi~~~s--~~~~~-~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~-Gp~ 320 (358)
++.+|++.+. +.|.. . -+++|.++|++||+++|.|++|. |+...|... ...+ -.|++ ++.|.|. |.+
T Consensus 198 ~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~a~~~~gv~pDi~--tlsK~l~~G~p 274 (425)
T PRK07495 198 RVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQT-GFARTGKLFAMEHHEVAADLT--TMAKGLAGGFP 274 (425)
T ss_pred ceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-cCCcCCCceeecccCCCCCEE--eehhhhcCCcc
Confidence 4667777643 22322 2 28899999999999999999987 654444321 1122 34665 5569984 456
Q ss_pred EEEEEEeC
Q 018300 321 GGMIFFKK 328 (358)
Q Consensus 321 GG~I~~~~ 328 (358)
.|++++++
T Consensus 275 igav~~~~ 282 (425)
T PRK07495 275 LAAVTGRA 282 (425)
T ss_pred ceEEEEcH
Confidence 78888877
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-05 Score=78.93 Aligned_cols=156 Identities=19% Similarity=0.178 Sum_probs=100.1
Q ss_pred HHHHHHHHcCCCCCCCcceEEeC-CCHHHHHHHHHHh-cc--CCCEEEecCCCCCcccccccccchhccccCCceEEEEe
Q 018300 153 CQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYTAI-LK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP 228 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~-SGt~A~~~a~~al-l~--pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~ 228 (358)
.+..++++.|.+-+ |-... .+|.+-.++.++. .. +.++++++.-.|.-++..- .-...+..++++.
T Consensus 125 fQtlv~dLTGm~VA----NASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl------~Tra~~~g~~i~~ 194 (450)
T COG0403 125 FQTLVADLTGLDVA----NASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVL------RTRAEGLGIEIEV 194 (450)
T ss_pred HHHHHHHHhCCCcc----cchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHH------HhhcccCceEEEE
Confidence 46668899999863 43334 3455555555554 33 3678998765443332210 1112344445554
Q ss_pred ceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-CC-CCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CC
Q 018300 229 YRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YP-RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YC 305 (358)
Q Consensus 229 ~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-~~-~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-ga 305 (358)
++.+ |.+++++. +...+-.+++.+++ +| ...|+++|.+.+|++|+++++=. ..++-+.+..|-+ |+
T Consensus 195 ~~~~------d~~~l~~~-~~~~~~gv~vQyP~~~G~~~~d~~~l~~~~h~~~al~~v~a----DplaL~LL~pPGe~GA 263 (450)
T COG0403 195 VDAD------DLDDLESA-DDGDVFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIVAA----DPLALGLLKPPGEFGA 263 (450)
T ss_pred eccc------hhhhhhhc-cccCeEEEEEecCCCCCccchhHHHHHHHHhhcCCEEEEEe----chhHhhccCCccccCC
Confidence 3332 77788776 44355677887776 56 56789999999999999887632 2222233345556 99
Q ss_pred cEEEEcCcCc-----CccCcEEEEEEeCC
Q 018300 306 DVVTTTTHKS-----LRGPRGGMIFFKKD 329 (358)
Q Consensus 306 Div~~S~hK~-----L~Gp~GG~I~~~~~ 329 (358)
||++++++-. |+||..|+..++++
T Consensus 264 DIvvG~~QrfGvPmgfGGPhag~fA~~~~ 292 (450)
T COG0403 264 DIVVGSAQRFGVPMGFGGPHAGYFAVKDE 292 (450)
T ss_pred ceEEecCcccCCCcCCCCcceeeeeEhHh
Confidence 9999999964 57899999999885
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.9e-05 Score=80.12 Aligned_cols=196 Identities=14% Similarity=0.036 Sum_probs=102.1
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--cc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~ 190 (358)
+-+|.|.+++...+.+ .. +.. .....++ ......+++.+++.....+ ...+++||++|+..++... ..
T Consensus 72 h~~p~v~~ai~~q~~~-~~--~~~-~~~~~~~----~~~~la~~l~~~~p~~~~~--~v~f~~sGseA~e~AlklAr~~t 141 (443)
T PRK06058 72 NSAPRVVEAVREQVAR-FT--HTC-FMVTPYE----GYVAVAEQLNRLTPGDHEK--RSALFNSGAEAVENAVKIARSYT 141 (443)
T ss_pred CCCHHHHHHHHHHHHh-cc--Ccc-ccccCCH----HHHHHHHHHHHhCCCCCCC--EEEEeCCcHHHHHHHHHHHHHhh
Confidence 4588999998877653 21 111 0001122 2222455677776532111 2456789999999998732 22
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCC-------------ceEEEEec--eecC-CCCCCC--------HHHHHHH
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-------------IYFESMPY--RLDE-STGLVD--------YDMLEKT 246 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-------------~~~~~~~~--~~~~-~~~~iD--------~d~le~~ 246 (358)
..++|+..+..|.|.- .. .+...+ ..+...++ +.+. .....+ .+.+++.
T Consensus 142 gr~~ii~~~~~yHG~t-----~~--al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (443)
T PRK06058 142 GRQAVVVFDHAYHGRT-----NL--TMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQ 214 (443)
T ss_pred CCCeEEEECCCcCcCh-----HH--HHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHh
Confidence 3478888764433321 00 111111 00111121 1110 000111 2223333
Q ss_pred hhhcCCeEEEEcCCC--CCCCC----CHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCc
Q 018300 247 AILFRPKLIIAGASA--YPRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR 317 (358)
Q Consensus 247 i~~~~~klIi~~~s~--~~~~~----dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~ 317 (358)
+...++..|++++-. .|... -+++|.++|++||+++|.|+.|. |+.-.|... .-++ ..|+++++ |.|+
T Consensus 215 ~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~t-GfgRtG~~fa~~~~gv~PDiv~~g--K~l~ 291 (443)
T PRK06058 215 VGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQT-GFARTGAWFACEHEGIVPDLITTA--KGIA 291 (443)
T ss_pred hCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcChhhhHHHhcCCCCCEEEEc--cccc
Confidence 322356677776432 23222 28999999999999999999987 653333211 1122 45888775 9984
Q ss_pred -cCcEEEEEEeC
Q 018300 318 -GPRGGMIFFKK 328 (358)
Q Consensus 318 -Gp~GG~I~~~~ 328 (358)
|.+.|++++++
T Consensus 292 ~G~Pi~av~~~~ 303 (443)
T PRK06058 292 GGLPLSAVTGRA 303 (443)
T ss_pred CCCccEEEEEcH
Confidence 44567888876
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.3e-05 Score=79.85 Aligned_cols=202 Identities=14% Similarity=0.047 Sum_probs=107.1
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc---
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--- 189 (358)
+-+|.|.+|+.+.+.+- ........+ .++ .+.++.+++.+++..+.+ ...+.+||++|+.+++....
T Consensus 64 h~~p~i~~Ai~~q~~~~-~~~~~~~~~--~~~----~~~~lae~L~~~~p~~~~---~v~f~~SGseAve~AlKlar~~~ 133 (460)
T PRK06105 64 FSEQRLVEAAARQMKKL-PFYHTFSHK--SHG----PVIDLAEKLVAMAPVPMS---KVFFTNSGSEANDTVVKLVWYYN 133 (460)
T ss_pred CCCHHHHHHHHHHHHhC-CCeeccccc--CCH----HHHHHHHHHHHhCCCCCC---EEEEeCCcHHHHHHHHHHHHHHH
Confidence 34889999998876542 110111111 122 222245567777754332 23556899999999997642
Q ss_pred ---c-CC-CEEEecCCCCCcccccccccchhccccCCc------------eEEEEeceecCC----CC------CCCHHH
Q 018300 190 ---K-PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDES----TG------LVDYDM 242 (358)
Q Consensus 190 ---~-pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~~~~~~~~~----~~------~iD~d~ 242 (358)
. +| .+|+.....|.|.- .+ .....+. .+..++++.... .. ...+++
T Consensus 134 ~~~g~t~r~~il~~~~~yHG~t-~~------a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
T PRK06105 134 NALGRPEKKKIISRQRGYHGVT-IA------SASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANE 206 (460)
T ss_pred HhcCCCCCcEEEEecCccCCcc-hh------heeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHH
Confidence 1 23 46777654333321 01 1111111 011111110000 00 012356
Q ss_pred HHHHhhh---cCCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEecccc-ccccccCCcc--CCCC-CCcEEE
Q 018300 243 LEKTAIL---FRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHI-SGLVAASVVA--DPFK-YCDVVT 309 (358)
Q Consensus 243 le~~i~~---~~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~-~Gl~~~g~~~--~pl~-gaDiv~ 309 (358)
+++.+.. .++..|++++- +.|...+ +++++++|++||+++|+|+.|+ +|.. |... .-++ ..|+++
T Consensus 207 le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRt--G~~f~~~~~~v~PDi~~ 284 (460)
T PRK06105 207 LEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRT--GNMFGCETFGIKPDILV 284 (460)
T ss_pred HHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcC--chhhhHHhcCCCCCeee
Confidence 7776632 24567777652 2344444 8999999999999999999985 4433 2211 1122 468885
Q ss_pred EcCcCcCccC--cEEEEEEeCCCCchhHHHHHHh
Q 018300 310 TTTHKSLRGP--RGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 310 ~S~hK~L~Gp--~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
+ .|.|+|- ..|.+++++ ++.+.+.
T Consensus 285 ~--gK~lggG~~P~~av~~~~------~i~~~~~ 310 (460)
T PRK06105 285 M--SKQLSSSYQPLSAVLMNE------KVYDPIA 310 (460)
T ss_pred e--ecccccCcccceEEEEcH------HHHHHHh
Confidence 5 4999653 467777776 5655554
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2e-05 Score=79.36 Aligned_cols=195 Identities=15% Similarity=0.088 Sum_probs=105.8
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--cc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~ 190 (358)
.-+|.|.+++...+.. .. +.....+ .++ .+....+++.+++.....+ ..++.+||++|+..++... ..
T Consensus 56 h~~p~v~~ai~~ql~~-~~--~~~~~~~-~~~----~~~~la~~l~~~~p~~~~~--~~~f~~sGseA~e~AlklAr~~t 125 (421)
T PRK09792 56 HRHPDLVAAVEQQLQQ-FT--HTAYQIV-PYE----SYVTLAEKINALAPVSGQA--KTAFFTTGAEAVENAVKIARAHT 125 (421)
T ss_pred CCCHHHHHHHHHHHHh-cc--CcccCcc-CCH----HHHHHHHHHHHhCCCCCCc--eEEEeCChHHHHHHHHHHHHHhc
Confidence 3478888888776653 21 1111111 122 1122344566665422101 2456789999999998654 22
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCC-------------ceEEEEeceecCCCCC---CCHHHHHHHhhh----c
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-------------IYFESMPYRLDESTGL---VDYDMLEKTAIL----F 250 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~---iD~d~le~~i~~----~ 250 (358)
...+|+.....|.|.-. + .+...+ ..+..++++.+. ++. -|++.+++.+.. .
T Consensus 126 gr~~ii~~~~~yHG~t~-~------~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~~~~~~l~~~~~~~~~~~ 197 (421)
T PRK09792 126 GRPGVIAFSGGFHGRTY-M------TMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQDSLDAIERLFKSDIEAK 197 (421)
T ss_pred CCCeEEEECCCcCCccH-H------HHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHHHHHHHHHHHHHhccCCC
Confidence 33578877643333210 0 011111 012223433221 111 134778877752 3
Q ss_pred CCeEEEEcCCCC--CC-CCC---HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCc-cCc
Q 018300 251 RPKLIIAGASAY--PR-DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPR 320 (358)
Q Consensus 251 ~~klIi~~~s~~--~~-~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~-Gp~ 320 (358)
++++|++++... |. ..+ +++|.++|+++|+++|+|+.|. |+...|... ..++ ..|++ ++.|.|+ |.+
T Consensus 198 ~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~gr~G~~~a~~~~~~~pDi~--t~gK~l~~G~p 274 (421)
T PRK09792 198 QVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQS-GFARTGKLFAMDHYADKPDLM--TMAKSLAGGMP 274 (421)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCCCCchhHHHhcCCCCcEE--EeehhhcCCCc
Confidence 467888876432 32 335 8899999999999999999977 543334211 1122 45765 5569984 456
Q ss_pred EEEEEEeC
Q 018300 321 GGMIFFKK 328 (358)
Q Consensus 321 GG~I~~~~ 328 (358)
.|++++++
T Consensus 275 igav~~~~ 282 (421)
T PRK09792 275 LSGVVGNA 282 (421)
T ss_pred eEEEEEcH
Confidence 78888876
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-05 Score=81.27 Aligned_cols=196 Identities=17% Similarity=0.107 Sum_probs=102.3
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~p 191 (358)
-+|.|.+++...+.+......+ .+ .++ .+..+.+++.+++.....+ ...+.+|||+|+..++... ...
T Consensus 71 ~~p~v~~Ai~~ql~~~~~~~~~--~~--~~~----~~~~lAe~L~~~~p~~~~~--~v~f~~SGsEA~e~AlklAr~~tg 140 (441)
T PRK05769 71 AHPKVVKAVKEQAEKFLHYSLT--DF--YYE----PAVELAERLVEIAPGGFEK--KVFFTNSGTESNEAAIKIARYHTG 140 (441)
T ss_pred CCHHHHHHHHHHHHhccCccCc--cc--CCH----HHHHHHHHHHHhCCCCCCC--EEEECCchHHHHHHHHHHHHHHhC
Confidence 4788888888776532110110 01 122 2233456677776522111 2355779999999998643 223
Q ss_pred CCEEEecCCCCCcccccccccchhccccCC-------------ceEEEEecee------cCCCC----CCCHHHHHH-Hh
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-------------IYFESMPYRL------DESTG----LVDYDMLEK-TA 247 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-------------~~~~~~~~~~------~~~~~----~iD~d~le~-~i 247 (358)
.++|+...-.|.|. ... .+...+ ..+..++++. +..+. .-+.+.+++ .+
T Consensus 141 r~~Ii~~~~~yHG~-----t~~--~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~ 213 (441)
T PRK05769 141 RKYIIAFLGAFHGR-----TYG--SLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLF 213 (441)
T ss_pred CCeEEEECCCcCCc-----cHH--HHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHH
Confidence 46788765433222 100 011111 0112222210 00000 001244555 22
Q ss_pred h----hcCCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcC
Q 018300 248 I----LFRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHK 314 (358)
Q Consensus 248 ~----~~~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK 314 (358)
+ ..++.+|++++- ..|...+ +++|.++|+++|+++++|++|+ |+...|... ..++ ..|+++++ |
T Consensus 214 ~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~t-G~gr~G~~~a~~~~gv~pDivt~~--K 290 (441)
T PRK05769 214 KKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQT-GMGRTGKMFAIEHFGVEPDIITLA--K 290 (441)
T ss_pred hhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccceehhhccCCCCCEEEEc--c
Confidence 2 124566777642 2345556 9999999999999999999998 543333221 1122 35888654 9
Q ss_pred cCc-cCcEEEEEEeCC
Q 018300 315 SLR-GPRGGMIFFKKD 329 (358)
Q Consensus 315 ~L~-Gp~GG~I~~~~~ 329 (358)
.++ |.+.|+++++++
T Consensus 291 ~l~~G~p~gav~~~~~ 306 (441)
T PRK05769 291 AIAGGLPLGAVIGRAE 306 (441)
T ss_pred cccCCcccEEEEEehh
Confidence 885 445678888774
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.3e-05 Score=79.46 Aligned_cols=202 Identities=22% Similarity=0.213 Sum_probs=104.4
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc---
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--- 189 (358)
.-+|.|.+|+...+.+ ...... +...++ .+....+++++++....+ ...+.+|||+|+..++....
T Consensus 62 h~~p~v~~ai~~ql~~-l~~~~~---~~~~~~----~~~~la~~l~~~~p~~~~---~v~f~~sGseA~e~AlklAr~~~ 130 (442)
T PRK13360 62 HGRPEIVEAVRAQAGE-LDYAPA---FQMGHP----KAFELANRIAEIAPGGLN---HVFFTNSGSESVDTALKIALAYH 130 (442)
T ss_pred CCCHHHHHHHHHHHHh-CCCccc---CCcCCH----HHHHHHHHHHHhCCCCCC---EEEEeCCcHHHHHHHHHHHHHHH
Confidence 4578888888776643 211111 111222 222345567777642221 23567899999999986431
Q ss_pred ----cC-CCEEEecCCCCCcccccccccchhccccCCc------------eEEEEeceecCCCCCC----------CHHH
Q 018300 190 ----KP-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDESTGLV----------DYDM 242 (358)
Q Consensus 190 ----~p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~~i----------D~d~ 242 (358)
++ ..+|+.....|.|.- .+ .+...+. .+..++++.+...... +.++
T Consensus 131 ~~~g~~~r~~ii~~~~~yHG~t-~g------als~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 203 (442)
T PRK13360 131 RARGEGSRTRLIGRERGYHGVG-FG------GISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADE 203 (442)
T ss_pred HhcCCCCCcEEEEEcCCcCCcc-Hh------hhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHH
Confidence 12 357887764433320 00 1111110 0112222211000000 1457
Q ss_pred HHHHhhhc---CCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEecccc-ccccccCCccCCCC-CCcEEEEc
Q 018300 243 LEKTAILF---RPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHI-SGLVAASVVADPFK-YCDVVTTT 311 (358)
Q Consensus 243 le~~i~~~---~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~-~Gl~~~g~~~~pl~-gaDiv~~S 311 (358)
+++.+... ++.+|++++- ..|...+ +++|+++|+++|+++|+|++|. +|-.+......-++ ..|++++
T Consensus 204 le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt~- 282 (442)
T PRK13360 204 LERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTC- 282 (442)
T ss_pred HHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCceeee-
Confidence 77777532 3446777642 2344455 9999999999999999999995 33322111011122 4588755
Q ss_pred CcCcCcc---CcEEEEEEeCCCCchhHHHHHHh
Q 018300 312 THKSLRG---PRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 312 ~hK~L~G---p~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
.|.|.| |-|+ +++++ ++.+.+.
T Consensus 283 -gK~l~gG~~P~ga-v~~~~------~i~~~~~ 307 (442)
T PRK13360 283 -AKGLTNGAIPMGA-VFVSS------EIHDAFM 307 (442)
T ss_pred -eeccccCccceEE-EEEcH------HHHHHhh
Confidence 699964 4444 55555 5555544
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.9e-06 Score=81.69 Aligned_cols=145 Identities=18% Similarity=0.144 Sum_probs=80.7
Q ss_pred CCCHHHHHHHHHHh--ccCCCEEEecCCCCCcccccccccchhccccCC------------ceEEEEeceecCCCCCCCH
Q 018300 175 LSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDESTGLVDY 240 (358)
Q Consensus 175 ~SGt~A~~~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~iD~ 240 (358)
+||++|+..++... .....+|+.....|.|.- .+ .+...+ ..+..++++.......-|+
T Consensus 110 ~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t-~~------~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 182 (425)
T PRK09264 110 PTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMT-LG------SLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTL 182 (425)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEECCccCCcc-HH------HHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHH
Confidence 69999999998654 233457777654332320 00 011111 0122233221100001367
Q ss_pred HHHHHHhhhc-----CCeEEEEcCC--CCCC-CC---CHHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCc
Q 018300 241 DMLEKTAILF-----RPKLIIAGAS--AYPR-DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCD 306 (358)
Q Consensus 241 d~le~~i~~~-----~~klIi~~~s--~~~~-~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaD 306 (358)
+++++.+... ++..|++++- ..|. .. .+++|.++|++||+++|+|+.|+ |+.-.|.. . ..++ ..|
T Consensus 183 ~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G~GrtG~~~~~~~~~v~PD 261 (425)
T PRK09264 183 AYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQA-GCGRTGTFFSFERAGITPD 261 (425)
T ss_pred HHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhh-CCccccHHHHHhhcCCCCC
Confidence 8888887532 2456777642 2232 22 48999999999999999999997 54322321 1 1122 458
Q ss_pred EEEEcCcCcCc--cCcEEEEEEeCC
Q 018300 307 VVTTTTHKSLR--GPRGGMIFFKKD 329 (358)
Q Consensus 307 iv~~S~hK~L~--Gp~GG~I~~~~~ 329 (358)
+++++ |.|+ |-+-|+++++++
T Consensus 262 i~t~~--K~l~~~G~pigav~~~~~ 284 (425)
T PRK09264 262 IVTLS--KSISGYGLPMALVLIKPE 284 (425)
T ss_pred EEEec--cccCCCccceEEEEEchh
Confidence 87664 9985 334578887763
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.6e-06 Score=79.27 Aligned_cols=165 Identities=15% Similarity=0.137 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHh-ccCCCEEEecCCCCCcccccccccchhccccCCceEE
Q 018300 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE 225 (358)
Q Consensus 148 ~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~ 225 (358)
-+++.+.+.+.+.=| .+++|. +|+.++|. .|+..++..+ -.+.|-||++-|.|.= +.. .+...|. .
T Consensus 117 ~vR~~VA~~I~rRDG-~p~~p~-dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPL---YsA-----ti~l~~~--~ 184 (475)
T KOG0258|consen 117 GVRKHVAEFIERRDG-IPADPE-DIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPL---YSA-----TISLLGG--T 184 (475)
T ss_pred hHHHHHHHHHHhccC-CCCCHH-HeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCch---hHH-----HHHHhCC--c
Confidence 455556666777777 555663 56666665 5888888776 4688999999876532 211 2344443 3
Q ss_pred EEeceecCCCC-CCCHHHHHHHhhhc----CCeE-EEEcCCC-CCC---CCCHHHHHHHHHHcCCEEEEecccccccccc
Q 018300 226 SMPYRLDESTG-LVDYDMLEKTAILF----RPKL-IIAGASA-YPR---DFDYPRMRQIADAVGALLMMDMAHISGLVAA 295 (358)
Q Consensus 226 ~~~~~~~~~~~-~iD~d~le~~i~~~----~~kl-Ii~~~s~-~~~---~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~ 295 (358)
.++|-+|++++ .+|.++|++.+++. +|++ +++++-| +|. ...+++|..+|.+.|+.|+.|+.+---+...
T Consensus 185 ~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~ 264 (475)
T KOG0258|consen 185 QVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTT 264 (475)
T ss_pred ccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCC
Confidence 45666776655 89999998877543 5664 5666433 332 4569999999999999999999754333322
Q ss_pred CCccCCC-------C--CCc----EEEEcCcCcC---ccCcEEEE
Q 018300 296 SVVADPF-------K--YCD----VVTTTTHKSL---RGPRGGMI 324 (358)
Q Consensus 296 g~~~~pl-------~--gaD----iv~~S~hK~L---~Gp~GG~I 324 (358)
+.....+ . +.| +.+.|+||.+ +|.|||.+
T Consensus 265 ~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYm 309 (475)
T KOG0258|consen 265 GSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYM 309 (475)
T ss_pred CcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCee
Confidence 2110001 1 232 3356778887 67888865
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.1e-05 Score=76.46 Aligned_cols=201 Identities=17% Similarity=0.108 Sum_probs=106.6
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceEEeCCCHHHHHHHHHHh--c
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAI--L 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~-~~~~~v~V~~~SGt~A~~~a~~al--l 189 (358)
.-+|.|.+|+.+.+..-. ....++......++ ..+++.+++-.+ .+ ...+.+||++||.+++... .
T Consensus 72 H~hP~Vv~Av~~q~~~~~---h~~~~~~~~e~~v~-----~ae~L~~~~p~~~~~---~~~f~~sGaeA~E~AiKiAr~~ 140 (447)
T COG0160 72 HNHPRVVEAVKRQLAKLN---HTHTRDLYYEPYVE-----LAEKLTALAPGSGLK---KVFFGNSGAEAVEAAIKIARAY 140 (447)
T ss_pred CCCHHHHHHHHHHHHHhh---cccCCcccchhHHH-----HHHHHHHhCCcccCC---eEEecCCcHHHHHHHHHHHHHH
Confidence 348999999887554321 11112222222222 334456666553 22 3566789999999999654 2
Q ss_pred cCCCEEEecCCCCCcccccccc--cchhccccC-----CceEEEEeceecCCC---------CCCCHHHHHHHhhh----
Q 018300 190 KPHDRIMGLDLPHGGHLSHGFM--TPKRRVSGT-----SIYFESMPYRLDEST---------GLVDYDMLEKTAIL---- 249 (358)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~--~~~~~~~~~-----g~~~~~~~~~~~~~~---------~~iD~d~le~~i~~---- 249 (358)
..+..||...-.+.|. +++.. +..+..... .-.+..+||+..... ..-..+.+++.+..
T Consensus 141 Tgr~~viaf~~afHG~-T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~ 219 (447)
T COG0160 141 TGRPGVIAFDGAFHGR-TLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVG 219 (447)
T ss_pred hCCCcEEEECCccccc-chhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCC
Confidence 3346677766443332 11110 000000000 011334444422110 01122335553322
Q ss_pred -cCCeEEEEcCC--CCCCCC----CHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC----CCcEEEEcCcCcCcc
Q 018300 250 -FRPKLIIAGAS--AYPRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLRG 318 (358)
Q Consensus 250 -~~~klIi~~~s--~~~~~~----dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~----gaDiv~~S~hK~L~G 318 (358)
.++..|++++- ..|... -++++.++|+|||+++|+|+.|+ |+--.|.+- .++ -.|++|++ |.++|
T Consensus 220 ~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQt-G~GRTG~~f-a~E~~gv~PDivt~a--K~ig~ 295 (447)
T COG0160 220 PEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQT-GFGRTGKMF-AFEHFGVEPDIVTLA--KSLGG 295 (447)
T ss_pred CCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccccch-hhhhcCCCCCEEEec--ccccC
Confidence 13556777642 233322 28999999999999999999998 655455321 223 45898766 99955
Q ss_pred -CcEEEEEEeCC
Q 018300 319 -PRGGMIFFKKD 329 (358)
Q Consensus 319 -p~GG~I~~~~~ 329 (358)
..-|.++++++
T Consensus 296 G~Pl~avv~r~e 307 (447)
T COG0160 296 GLPLSAVVGRAE 307 (447)
T ss_pred CCceeEEeccHH
Confidence 44577887773
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-05 Score=80.12 Aligned_cols=185 Identities=17% Similarity=0.085 Sum_probs=99.1
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-ccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~pG 192 (358)
-+|.|.+|+.+.+..... +.... ..+....+++.+++.... ...+.+|||+|+..++... .-.|
T Consensus 65 ~~p~v~~Ai~~q~~~~~~-------~~~~~----~~~~~la~~l~~~~p~~~----~v~f~~sGseA~e~AlklAr~~tg 129 (431)
T PRK06209 65 AYPPVVEAVREALQDGCN-------FTRPS----AIELDAAESFLELIDGAD----MVKFCKNGSDATSAAVRLARAYTG 129 (431)
T ss_pred CCHHHHHHHHHHHHhCcC-------CCCCC----HHHHHHHHHHHHhCCccc----eEEEecCHHHHHHHHHHHHHHHhC
Confidence 477888888776653211 11111 122224456777764212 2456789999999998743 1123
Q ss_pred -CEEEecC--CCCCccc-ccccccchhccccCCce----EEEEeceecCCCCCCCHHHHHHHhhhc--CCeEEEEcCCCC
Q 018300 193 -DRIMGLD--LPHGGHL-SHGFMTPKRRVSGTSIY----FESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAY 262 (358)
Q Consensus 193 -D~Vl~~~--~~~ggh~-s~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~iD~d~le~~i~~~--~~klIi~~~s~~ 262 (358)
.+|+... .-|+.+- .|+. + .. ..+.. .....++ .-|++++++.++.. +..+|++++ .+
T Consensus 130 r~~i~~~~~~~~h~~~~~~~g~-~---~~-~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~~~~~~aavi~Ep-v~ 197 (431)
T PRK06209 130 RDLVARCADHPFFSTDDWFIGT-T---PM-SAGIPASVSALTVTFR------YNDIASLEALFEDHPGRIACVILEP-AT 197 (431)
T ss_pred CCeEEEeccCcccccccccccc-C---CC-CCCCChhHhccccccC------CCCHHHHHHHHHhCCCCEEEEEEcc-cc
Confidence 3555541 1111010 0111 0 00 00100 0011111 33789999887542 345666653 33
Q ss_pred CC---CCCHHHHHHHHHHcCCEEEEeccccccccccCC-ccCCCC-CCcEEEEcCcCcCcc-CcEEEEEEeC
Q 018300 263 PR---DFDYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKK 328 (358)
Q Consensus 263 ~~---~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~~pl~-gaDiv~~S~hK~L~G-p~GG~I~~~~ 328 (358)
+. ...+++|.++|++||+++|+|++| .|+...+. ...-++ ..|+++ +.|.|+| -.+|++++++
T Consensus 198 g~~~~~~~l~~l~~lc~~~g~lLI~DEv~-tG~~~~~~g~~~~~gv~PDi~t--~gK~lggG~p~~av~~~~ 266 (431)
T PRK06209 198 ADEPQDGFLHEVRRLCHENGALFILDEMI-TGFRWHMRGAQKLYGIVPDLSC--FGKALGNGFAVSALAGKR 266 (431)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEccc-ccCCcCcchhhHHhCCCcceee--ehhhhcCCcccEEEEEHH
Confidence 33 233899999999999999999999 57643211 111122 457755 4699965 3577788876
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.8e-06 Score=81.03 Aligned_cols=195 Identities=20% Similarity=0.226 Sum_probs=126.6
Q ss_pred cccccccCCCC----cHHHHHHHhhhhhcccCCCCCCCc-CCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH
Q 018300 104 SLELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 178 (358)
Q Consensus 104 ~i~lias~n~~----s~~V~~al~~~l~~~~~~G~pg~r-~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt 178 (358)
.+|+ +|.||. .+.+.+.....+ .+|.-|..|-| +|+.-+..-++| +++++++|++.+ +...-|-
T Consensus 96 ~~N~-aS~NfL~l~~~~~ike~a~~~l-rkyGvGsCGPrGFYGt~DvHldlE----~~iakF~G~E~a-----ivYs~gF 164 (467)
T KOG1358|consen 96 VLNF-ASANFLGLIENEEIKEEASFTL-RKYGVGSCGPRGFYGTIDVHLDLE----KRIAKFMGTEDA-----IVYSYGF 164 (467)
T ss_pred eecc-cchhhhhhcccHHHHHHHHHHH-HHhCCCCcCCCcccccceeecccH----HHHHHhhCCcce-----eeecccc
Confidence 3443 788875 677777766555 46656666655 444433333444 468999999984 5567788
Q ss_pred HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc------CC
Q 018300 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF------RP 252 (358)
Q Consensus 179 ~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~------~~ 252 (358)
.++..++.++.+.||.|.+.+- .+++- .+.+.++.- ....+ ...|.++++..+.+. +|
T Consensus 165 ~ti~S~ipafsKrGDIi~~de~---~nfaI-----q~GlqlSRS--~i~~F------khndm~~lerll~E~~~~~~K~~ 228 (467)
T KOG1358|consen 165 STIESAIPAFSKRGDIIFVDEA---VNFAI-----QKGLQLSRS--TISYF------KHNDMEDLERLLPEQEDEDQKNP 228 (467)
T ss_pred chhhhcchhhhccCcEEEEehh---hhHHH-----HHHHhhhhh--eeEEe------cCCCHHHHHHhccCcchhhhhcc
Confidence 8999999999999999988652 22221 012222211 12222 245677776654321 12
Q ss_pred ------eEEEEc--CCCCCCCCCHHHHHHHHHHcCCEEEEecccccccccc---CC--cc-CCCCCCcEEEEcCcCcCcc
Q 018300 253 ------KLIIAG--ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA---SV--VA-DPFKYCDVVTTTTHKSLRG 318 (358)
Q Consensus 253 ------klIi~~--~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~---g~--~~-~pl~gaDiv~~S~hK~L~G 318 (358)
+.|++. ..|+|..+++.+|.++..+|...++.|.+.++|..+. |. .+ .+.+..|++++|+.-.|++
T Consensus 229 k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas 308 (467)
T KOG1358|consen 229 KKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALAS 308 (467)
T ss_pred ccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccc
Confidence 245553 3578999999999999999999999999999998764 21 11 2233689999998877643
Q ss_pred CcEEEEEE
Q 018300 319 PRGGMIFF 326 (358)
Q Consensus 319 p~GG~I~~ 326 (358)
.||+..+
T Consensus 309 -~GgFc~G 315 (467)
T KOG1358|consen 309 -GGGFCAG 315 (467)
T ss_pred -cCceeec
Confidence 3555555
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.2e-05 Score=78.87 Aligned_cols=86 Identities=19% Similarity=0.167 Sum_probs=52.6
Q ss_pred HHHHHHhhh---cCCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEecccc-ccccccCCccCCCC-CCcEEE
Q 018300 241 DMLEKTAIL---FRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHI-SGLVAASVVADPFK-YCDVVT 309 (358)
Q Consensus 241 d~le~~i~~---~~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~-~Gl~~~g~~~~pl~-gaDiv~ 309 (358)
+.+++.+.. .++.+|++++- ..|...+ +++|.++|+++|+++|+|++|. +|-........-++ ..|+++
T Consensus 208 ~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt 287 (460)
T PRK06541 208 DRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIIT 287 (460)
T ss_pred HHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEE
Confidence 567777653 23456666542 2344445 8999999999999999999984 44322110011122 468876
Q ss_pred EcCcCcCcc-C-cEEEEEEeC
Q 018300 310 TTTHKSLRG-P-RGGMIFFKK 328 (358)
Q Consensus 310 ~S~hK~L~G-p-~GG~I~~~~ 328 (358)
+.|.|+| . +-|.+++++
T Consensus 288 --~gK~l~~G~~pigav~~~~ 306 (460)
T PRK06541 288 --CAKGITSGYSPLGAMIASD 306 (460)
T ss_pred --ecccccCCccceeEEEEcH
Confidence 5699964 2 455556665
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.4e-05 Score=76.89 Aligned_cols=202 Identities=15% Similarity=0.063 Sum_probs=108.1
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--cc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~ 190 (358)
+-+|.|.+++...+.+-. +.....+ .++ ...+ ..+++.+++.....+ ..++++|||+|+..++... ..
T Consensus 56 h~~p~v~~ai~~ql~~~~---~~~~~~~-~~~---~~~~-la~~l~~~~p~~~~~--~~~f~~sGseA~e~AlklAr~~t 125 (421)
T PRK06777 56 HRHPKVVAAVRQQLDQFT---HTAYQIV-PYA---SYVT-LAERINALAPIDGPA--KTAFFTTGAEAVENAVKIARAYT 125 (421)
T ss_pred CCCHHHHHHHHHHHhhcc---ccccccc-CCh---HHHH-HHHHHHHhCCCCCCc--eEEEeCCcHHHHHHHHHHHHHhh
Confidence 447888888877665321 1110011 112 1122 345566776432111 2456789999999998643 23
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCc-------------eEEEEeceecCCCC---CCCHHHHHHHhhh----c
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDESTG---LVDYDMLEKTAIL----F 250 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~---~iD~d~le~~i~~----~ 250 (358)
...+|+.....|.|.- .+ .+.+.+. .+..++++-. ..+ .-|++.+++.+.. .
T Consensus 126 gr~~ii~~~~~yHG~t-~~------~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~l~~~~~~~~~~~ 197 (421)
T PRK06777 126 GRPGVIAFGGAFHGRT-LL------TMALTGKVAPYKVGFGPFPGSIFHALYPNE-LHGVSVEEALSSVERLFKADIAPD 197 (421)
T ss_pred CCCeEEEEcCCcCCcc-HH------HHhhcCCCcccccCCCCCCCCcEEcCCCcc-ccCcCHHHHHHHHHHHHHhccCCC
Confidence 3456777664333321 01 1111110 0011122110 000 1236677777642 2
Q ss_pred CCeEEEEcCCC--CCC-CCC---HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCc-cCc
Q 018300 251 RPKLIIAGASA--YPR-DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPR 320 (358)
Q Consensus 251 ~~klIi~~~s~--~~~-~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~-Gp~ 320 (358)
+...|++++-. .|. ..+ +++|.++|+++|+++|+|+.|. |+...|... ..++ ..|++ ++.|.+. |.+
T Consensus 198 ~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~gr~g~~~~~~~~~~~pDiv--~~sK~l~~G~p 274 (421)
T PRK06777 198 QVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQT-GFARTGKLFAMEYYDVKPDLI--TMAKSLGGGMP 274 (421)
T ss_pred ceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCccCCchhhhhhcCCCCCEE--eeehhhcCCCc
Confidence 34567776432 232 233 8999999999999999999987 664444321 1122 46776 4679984 567
Q ss_pred EEEEEEeCCCCchhHHHHHHh
Q 018300 321 GGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 321 GG~I~~~~~~~~~~~~~~~i~ 341 (358)
.|++++++ ++.+.+.
T Consensus 275 igav~~~~------~i~~~~~ 289 (421)
T PRK06777 275 ISAVVGRA------EVMDAPA 289 (421)
T ss_pred eEEEEEcH------HHHhccC
Confidence 78898886 5655554
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.7e-05 Score=76.64 Aligned_cols=203 Identities=12% Similarity=0.001 Sum_probs=105.6
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--cc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~ 190 (358)
+-+|.|.+|+...+..-. +.+..++ .++ ...+ ..+++.+++.... +....+.+|||+|+..++... ..
T Consensus 49 h~~p~v~~a~~~ql~~~~---~~~~~~~-~~~---~~~~-la~~l~~~~p~~~--~~~v~f~~sGseA~e~AlklAr~~t 118 (420)
T TIGR00700 49 HSHPRVVDAVRTQVAEFT---HTCFMVT-PYE---GYVA-LAEKLNRIAPGSG--PKKSVFFNSGAEAVENAVKIARSYT 118 (420)
T ss_pred CCCHHHHHHHHHHHHhcc---Ccccccc-CCh---HHHH-HHHHHHHhCCCCC--CCEEEEeCCcHHHHHHHHHHHHHhc
Confidence 457888888887765321 1110001 112 1222 3445666664211 112466789999999998643 23
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCc-------------eEEEEeceecCCC----CCC----CHHHHHHHhh-
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDEST----GLV----DYDMLEKTAI- 248 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~----~~i----D~d~le~~i~- 248 (358)
...+|+.....|.| +... .+...+. .+..++++..... ... +++.+++.+.
T Consensus 119 gr~~ii~~~~~yHG-----~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (420)
T TIGR00700 119 GRPGVVAFDHGFHG-----RTNM--TMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVI 191 (420)
T ss_pred CCCcEEEECCCcCC-----CcHH--HHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHh
Confidence 34567776543322 2100 1111110 0111222110000 001 2456666553
Q ss_pred ---hcCCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcC
Q 018300 249 ---LFRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL 316 (358)
Q Consensus 249 ---~~~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L 316 (358)
..+...|++++- +.|...+ +++|.++|++||+++|+|+.+. |+...|... ..++ ..|+++ +.|.+
T Consensus 192 ~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~t-g~gr~g~~~a~~~~~~~pDi~~--lsK~l 268 (420)
T TIGR00700 192 DVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQT-GFARTGAMFACEHEGPEPDLIT--TAKSL 268 (420)
T ss_pred hcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCcccchhHHHhhcCCCCCEEE--eeccc
Confidence 123456777642 2233222 8999999999999999999976 554344211 1122 467765 67998
Q ss_pred c-cCcEEEEEEeCCCCchhHHHHHHh
Q 018300 317 R-GPRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 317 ~-Gp~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
. |.+.|++++++ ++.+.+.
T Consensus 269 ~~G~pig~v~~~~------~i~~~~~ 288 (420)
T TIGR00700 269 ADGLPLSGVTGRA------EIMDAPA 288 (420)
T ss_pred cCCcceEEEEecH------HHHhhcC
Confidence 4 56778888876 5555543
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.9e-06 Score=80.45 Aligned_cols=226 Identities=16% Similarity=0.192 Sum_probs=132.9
Q ss_pred cccC-hHHHHHHHHHHHHhhh-cccccccCCC-CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHH
Q 018300 84 GEAD-PEVCEIITKEKERQFK-SLELIASENF-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (358)
Q Consensus 84 ~~~d-~~~~~~i~~e~~~~~~-~i~lias~n~-~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~l 160 (358)
+.++ .++++++++|..-... .+++.....+ .++...+-+... .++++.-.+ .-|++ ..++|.+|-..++.+
T Consensus 59 ~gl~~d~v~~~i~~~~~ld~~~~~~~vS~~v~~~~~~~~~l~~~~-~~k~N~l~~--d~fp~---~~~~e~~~Vnm~~~L 132 (491)
T KOG1383|consen 59 KGLPKDAVLELINDELMLDGNPRLGLASGVVYWGEPELDKLIMEA-YNKFNPLHP--DEFPV---VRKLEAECVNMIANL 132 (491)
T ss_pred CCCCHHHHHHHHHHHhccCCCcccCeeeEEEecCCcchhhHHHHH-HhhcCccCc--cccch---hHHHHHHHHHHHHHH
Confidence 4455 5688888776654322 2222222222 133333333322 233211111 12333 347899999999999
Q ss_pred cCCCCCCCcceEEeCCCHHHHHHHHHHh---cc--CC-C--EEEecCCCCCcccccccccchhccccCCceEEEEeceec
Q 018300 161 FNLDENKWGVNVQPLSGSPANFEVYTAI---LK--PH-D--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (358)
Q Consensus 161 fg~~~~~~~v~V~~~SGt~A~~~a~~al---l~--pG-D--~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~ 232 (358)
|+.+.+..+ .-+++||++..++-... .+ +| + .|+++.. .|.+ +. +.....+. +...++++
T Consensus 133 ~~~~~~~~g--~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~---v~~a--~e---K~a~yf~v--~l~~V~~~ 200 (491)
T KOG1383|consen 133 FNAPSDSCG--CGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQN---VHAA--FE---KAARYFEV--ELREVPLD 200 (491)
T ss_pred hcCCccccC--ccccccchHHHHHHHHHHHHHHhccCCCCccccchHH---HHHH--HH---HHHhhEEE--EEEeeecc
Confidence 999875433 23456777855554433 11 11 1 2333221 2211 00 11223333 34455577
Q ss_pred CCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHH-cCCEEEEecccccccccc-CCcc-CCCC----
Q 018300 233 ESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADA-VGALLMMDMAHISGLVAA-SVVA-DPFK---- 303 (358)
Q Consensus 233 ~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e-~g~~livD~Ah~~Gl~~~-g~~~-~pl~---- 303 (358)
+.+..+|+.++.+.+.+ ++.+++...+++ |..-|+++|.++.-| +++++++|++-. |++.. +..+ .+++
T Consensus 201 ~~~~~~D~~k~~~~i~e-Nti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~G-gFi~p~~~~~~~~fdFr~p 278 (491)
T KOG1383|consen 201 EGDYRVDPGKVVRMIDE-NTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLG-GFINPAGYLNEEEFDFRVP 278 (491)
T ss_pred ccceEecHHHHHHHhcc-ceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCc-cccccccccCccccccCCC
Confidence 67789999999999875 677777766665 457889999999999 999999999843 55542 3322 2444
Q ss_pred CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 304 YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 304 gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
++--.+.++||+=..|.| ++++.+..
T Consensus 279 ~V~Sisa~~HKYGl~~~G~~~vl~r~k 305 (491)
T KOG1383|consen 279 GVTSISADGHKYGLAPAGSSWVLYRNK 305 (491)
T ss_pred CceeEeeccceeeeeecCcEEEEEccc
Confidence 666778899998666777 88888776
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.7e-05 Score=78.18 Aligned_cols=200 Identities=14% Similarity=0.095 Sum_probs=104.8
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--cc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~ 190 (358)
+-+|.|.+++.+.+.. .....+ .+ .++ .+....+++.+++....+ ...+.+|||+|+..++... ..
T Consensus 69 h~~p~v~~Ai~~q~~~-~~~~~~--~~--~~~----~~~~lae~L~~~~p~~~~---~v~f~~SGsEAve~AlklAr~~t 136 (451)
T PRK06062 69 HQHPKVVAAIQEQAAR-LCTVAP--AH--AND----ARSEAARLIAERAPGDLS---KVFFTNGGADANEHAVRMARLHT 136 (451)
T ss_pred CCCHHHHHHHHHHHHh-cCCcCC--cc--CCH----HHHHHHHHHHHhCCCCCC---EEEEcCChHHHHHHHHHHHHHhh
Confidence 3478888888776643 211111 11 122 122244556677643221 2356789999999998753 22
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCc-----------eEEEEecee--cCCCC-CCC-------HHHHHHHhhh
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-----------YFESMPYRL--DESTG-LVD-------YDMLEKTAIL 249 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-----------~~~~~~~~~--~~~~~-~iD-------~d~le~~i~~ 249 (358)
...+|+...-.|.|. ... .+...+. .+...+++. ....+ .-| ++.++++++.
T Consensus 137 gr~~ii~~~~~yHG~-----t~~--als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 209 (451)
T PRK06062 137 GRPKVLSAYRSYHGG-----TGS--AINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIEL 209 (451)
T ss_pred CCceEEEEeCCCCCC-----CHH--HHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHh
Confidence 345787765333222 100 1111110 001111110 00000 012 5677777753
Q ss_pred c---CCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc--cCCCC-CCcEEEEcCcCcCc
Q 018300 250 F---RPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLR 317 (358)
Q Consensus 250 ~---~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~--~~pl~-gaDiv~~S~hK~L~ 317 (358)
. ++..|++++- +.|...+ ++++.++|+++|+++|+|+.|+ |+.-.|.. ..-++ ..|++++ .|.|+
T Consensus 210 ~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~t-GfGRtG~~~a~~~~gv~PDi~t~--gK~lg 286 (451)
T PRK06062 210 EGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMA-GFGRTGKWFAIEHFGVVPDLITF--AKGVN 286 (451)
T ss_pred cCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeecccc-CCCcCcHHHHHHhcCCCCCeeee--chhhh
Confidence 2 3456777642 2344445 8999999999999999999998 54222321 11122 4687765 59997
Q ss_pred c---CcEEEEEEeCCCCchhHHHHHHh
Q 018300 318 G---PRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 318 G---p~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
| |-|+ +++++ ++.+.+.
T Consensus 287 gG~~Piga-v~~~~------~i~~~~~ 306 (451)
T PRK06062 287 SGYVPLGG-VAISE------AIAATFA 306 (451)
T ss_pred cCCcCcEE-EEEcH------HHHHHhc
Confidence 5 4444 55555 4555554
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.8e-05 Score=79.98 Aligned_cols=203 Identities=16% Similarity=0.097 Sum_probs=106.1
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc---
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--- 189 (358)
.-+|.|.+|+.+.+..-. ....+ .+ .++ ...+ ..+++.+++....+ ...+.+|||+|+..++....
T Consensus 59 h~~p~i~~Ai~~q~~~~~-~~~~~--~~-~~~---~~~~-la~~L~~~~p~~~~---~v~f~~SGsEAve~AlklAr~~~ 127 (428)
T PRK07986 59 YNHPQLNAAMKSQIDAMS-HVMFG--GI-THP---PAIE-LCRKLVAMTPQPLE---CVFLADSGSVAVEVAMKMALQYW 127 (428)
T ss_pred CCCHHHHHHHHHHHhhcC-Ccccc--cc-CCH---HHHH-HHHHHHhhCCCCcC---EEEEeCCcHHHHHHHHHHHHHHH
Confidence 347888888877664321 10110 00 122 1222 34556677653222 24567799999999987432
Q ss_pred ----cCCCEEEecCCCCCcccccccccchhccccCCc-------------eEEEEeceecCCC---CCCCHHHHHHHhhh
Q 018300 190 ----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDEST---GLVDYDMLEKTAIL 249 (358)
Q Consensus 190 ----~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~---~~iD~d~le~~i~~ 249 (358)
....+|+.....|.|. +.+ .....+. .+..++++..... ..-|++++++.++.
T Consensus 128 ~~~g~~r~kii~~~~~yHG~-t~~------a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~ 200 (428)
T PRK07986 128 QAKGEPRQRFLTLRHGYHGD-TFG------AMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAA 200 (428)
T ss_pred HhcCCCCcEEEEECCCcCCC-cHh------hhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHh
Confidence 2346788876443332 111 1111110 0011121110000 02356778877753
Q ss_pred c--CCeEEEEcC--CCC-CCC----CCHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCc
Q 018300 250 F--RPKLIIAGA--SAY-PRD----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR 317 (358)
Q Consensus 250 ~--~~klIi~~~--s~~-~~~----~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~ 317 (358)
. +...|++++ ... +.. ..+++|.++|+++|+++|+|++| .|+.-.|... .-++ ..|+++ +.|.|.
T Consensus 201 ~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~-tG~GrtG~~fa~~~~gv~PDi~t--~gK~l~ 277 (428)
T PRK07986 201 HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIA-TGFGRTGKLFACEHAGIAPDILC--LGKALT 277 (428)
T ss_pred CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCccCCCeeeecccCCCCCEEE--echhhh
Confidence 2 344667764 222 221 23899999999999999999999 5753333211 1122 458885 569985
Q ss_pred cC--cEEEEEEeCCCCchhHHHHHHhh
Q 018300 318 GP--RGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 318 Gp--~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
|- ..|.+++++ ++.+.+..
T Consensus 278 gG~~p~~av~~~~------~i~~~~~~ 298 (428)
T PRK07986 278 GGTMTLSATLTTR------EVAETISN 298 (428)
T ss_pred CCcccCcchhchH------HHHHHhhc
Confidence 32 345556665 56666543
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.6e-05 Score=78.14 Aligned_cols=201 Identities=20% Similarity=0.166 Sum_probs=104.7
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc---
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--- 189 (358)
.-+|.|.+++.+.+.+- ..+. . +...++. ..+ ..+++.+++....+ ...+.+||++|+..++....
T Consensus 65 h~~p~v~~ai~~ql~~l-~~~~-~--~~~~~~~---~~~-la~~L~~~~p~~~~---~v~f~~sGseAve~AlklAr~~~ 133 (445)
T PRK09221 65 HGRPEIVEAVARQAATL-DYAP-A--FQMGHPL---AFE-LAERLAELAPGGLD---HVFFTNSGSESVDTALKIALAYH 133 (445)
T ss_pred CCCHHHHHHHHHHHHhc-cCcc-c--cccCCHH---HHH-HHHHHHHhCCCCCC---EEEEeCCcHHHHHHHHHHHHHHH
Confidence 35788888887766532 1111 1 1112221 222 44567777643221 24567899999999986431
Q ss_pred ---c-C-CCEEEecCCCCCcccccccccchhccccCCc------------eEEEEeceecCCCC----------CCCHHH
Q 018300 190 ---K-P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDESTG----------LVDYDM 242 (358)
Q Consensus 190 ---~-p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~----------~iD~d~ 242 (358)
. + ..+|+...-.|.|.- .+ .+...+. .+..++++.+.... .-..++
T Consensus 134 ~~~g~~~r~~ii~~~~~yHG~t-~g------als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (445)
T PRK09221 134 RARGQGTRTRLIGRERGYHGVG-FG------GISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADD 206 (445)
T ss_pred HhcCCCCCcEEEEECCCcCccc-hh------hhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHH
Confidence 1 2 247887764333320 00 1111110 01122221100000 001356
Q ss_pred HHHHhhhc---CCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc--cCCCC-CCcEEEE
Q 018300 243 LEKTAILF---RPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTT 310 (358)
Q Consensus 243 le~~i~~~---~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~--~~pl~-gaDiv~~ 310 (358)
+++.++.. ++..|++++- ..|...+ +++|.++|+++|+++|+|++|+ |+.-.|.. ..-++ ..|++++
T Consensus 207 l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~t-G~GRtG~~~~~~~~gv~PDi~~~ 285 (445)
T PRK09221 207 LERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVIT-GFGRLGAAFAAERFGVTPDIITF 285 (445)
T ss_pred HHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-CCCcCchhhHHHhcCCCCCEEEe
Confidence 77766532 3456777642 2344555 8999999999999999999986 44222221 01122 3488755
Q ss_pred cCcCcCcc--CcEEEEEEeCCCCchhHHHHHH
Q 018300 311 TTHKSLRG--PRGGMIFFKKDPVLGVELESAI 340 (358)
Q Consensus 311 S~hK~L~G--p~GG~I~~~~~~~~~~~~~~~i 340 (358)
.|.|.| ...|.+++++ ++.+.+
T Consensus 286 --gK~l~gG~~Pi~av~~~~------~i~~~~ 309 (445)
T PRK09221 286 --AKGLTNGAIPMGAVIASD------EIYDAF 309 (445)
T ss_pred --ccccccCcccceeeEEcH------HHHHhh
Confidence 488854 3456677766 555554
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=98.28 E-value=3e-05 Score=77.93 Aligned_cols=198 Identities=15% Similarity=0.108 Sum_probs=101.1
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCC-CCCcceEEe-CCCHHHHHHHHHHh--
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQP-LSGSPANFEVYTAI-- 188 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~-~~~~v~V~~-~SGt~A~~~a~~al-- 188 (358)
+-+|.|.+++.+.+... ++.....+ .++ ...+ ..+++.+++.... ... ..+++ +||++|+..++...
T Consensus 51 h~~p~v~~ai~~ql~~~---~~~~~~~~-~~~---~~~~-lae~l~~~~~~~~~~~~-~~~f~~~sGseA~e~AlklAr~ 121 (412)
T TIGR02407 51 HNNPKLKQALIDYLADD---GIIHSLDM-ATE---AKRE-FLETFNEIILKPRGLDY-KVQFPGPTGTNAVESALKLARK 121 (412)
T ss_pred CCCHHHHHHHHHHHhhc---cceecccc-CcH---HHHH-HHHHHHHhccCccCCCc-eEEEeCCCchHHHHHHHHHHhh
Confidence 45888888887766532 11110011 122 1222 3445555532111 000 12343 79999999998754
Q ss_pred ccCCCEEEecCCCCCcccccccccchhccccCCc------------eEEEEeceecCCCCCCCHHHHHHHhhhc-----C
Q 018300 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDESTGLVDYDMLEKTAILF-----R 251 (358)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~~iD~d~le~~i~~~-----~ 251 (358)
.....+|+.....|.|.- .+ .+..++. .+..++++-......-|++.+++.+..+ +
T Consensus 122 ~tgr~~ii~~~~~yHG~t-~~------als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 194 (412)
T TIGR02407 122 VTGRSNVVSFTNAFHGMT-LG------SLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDL 194 (412)
T ss_pred hcCCCeEEEECCCcCCch-HH------HHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCc
Confidence 233467887664332321 00 1111110 1111222100000012466788777532 3
Q ss_pred CeEEEEcCC--CCCC-C---CCHHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcCcCcCc--cCc
Q 018300 252 PKLIIAGAS--AYPR-D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR--GPR 320 (358)
Q Consensus 252 ~klIi~~~s--~~~~-~---~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~hK~L~--Gp~ 320 (358)
+..|++++- +.|. . .-+++|.++|+++|+++|.|+.|+ |+.-.|.. . ...+ ..|+++++ |+|+ |-+
T Consensus 195 ~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G~GRtG~~~a~~~~~v~PDi~~~~--K~lg~~G~p 271 (412)
T TIGR02407 195 PAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQA-GCGRTGTFFSFEPAGIEPDIVCLS--KSISGYGLP 271 (412)
T ss_pred eEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchhHHhcccCCCCCEEEec--hhccCCccc
Confidence 466777542 2233 1 228899999999999999999987 44222221 1 1122 46888765 9985 445
Q ss_pred EEEEEEeCC
Q 018300 321 GGMIFFKKD 329 (358)
Q Consensus 321 GG~I~~~~~ 329 (358)
-|+++.+++
T Consensus 272 igav~~~~~ 280 (412)
T TIGR02407 272 LALTLIKPE 280 (412)
T ss_pred eeEEEEchh
Confidence 688888763
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.5e-05 Score=76.41 Aligned_cols=196 Identities=13% Similarity=0.051 Sum_probs=104.6
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~p 191 (358)
-+|.|.+|+.+.+......++ .++ .+....+++.+++.- .+ ...+.+|||+|+..++... ...
T Consensus 70 ~~p~v~~ai~~q~~~~~~~~~-------~~~----~~~~la~~l~~~~p~-~~---~v~f~~sGseA~e~AlklAr~~tg 134 (428)
T PRK12389 70 AHPHITKAITEAAENGVLYGT-------PTE----LEIEFAKMLKEAIPS-LE---KVRFVNSGTEAVMTTIRVARAYTG 134 (428)
T ss_pred CCHHHHHHHHHHHHhCCccCC-------CCH----HHHHHHHHHHHhCCC-Cc---EEEEeCCHHHHHHHHHHHHHHhhC
Confidence 478888888776653211111 122 122244556666642 21 2456789999999998754 233
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCce-EE---EE--ec--eecCCC---CCCCHHHHHHHhhhc--CCeEEEEc
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FE---SM--PY--RLDEST---GLVDYDMLEKTAILF--RPKLIIAG 258 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~---~~--~~--~~~~~~---~~iD~d~le~~i~~~--~~klIi~~ 258 (358)
..+|+...-.|.| +... .+...+.. .. .. .+ ...++. ...|++.+++.+... ++..|+++
T Consensus 135 r~~ii~~~~~yHG-----~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~E 207 (428)
T PRK12389 135 RTKIIKFAGCYHG-----HSDL--VLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVE 207 (428)
T ss_pred CCEEEEECCCcCC-----ChHH--HHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEe
Confidence 4578776543333 2100 11111100 00 00 00 000000 123788998887543 34566766
Q ss_pred CC--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc--cCCCC-CCcEEEEcCcCcCcc-CcEEEEEEeC
Q 018300 259 AS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKK 328 (358)
Q Consensus 259 ~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~--~~pl~-gaDiv~~S~hK~L~G-p~GG~I~~~~ 328 (358)
+- ..|...+ +++|.++|+++|+++|+|+.|+ |+.. +.. ..-++ ..|++++ .|.|+| ...|.+++++
T Consensus 208 Pv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~t-G~Rt-~~~~a~~~~gv~PDivt~--gK~lggG~Pi~av~~~~ 283 (428)
T PRK12389 208 PIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVIT-AFRF-MYGGAQDLLGVEPDLTAL--GKIIGGGLPIGAYGGRK 283 (428)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccc-cccc-CcchhhHHhCCCCCeeee--chhhcCCCceeEEeEHH
Confidence 42 2344444 8999999999999999999987 4421 110 11122 4688744 699854 2345556766
Q ss_pred CCCchhHHHHHHh
Q 018300 329 DPVLGVELESAIN 341 (358)
Q Consensus 329 ~~~~~~~~~~~i~ 341 (358)
++.+.+.
T Consensus 284 ------~i~~~~~ 290 (428)
T PRK12389 284 ------DIMEQVA 290 (428)
T ss_pred ------HHHhhhc
Confidence 5666553
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.1e-05 Score=77.54 Aligned_cols=150 Identities=15% Similarity=0.202 Sum_probs=98.5
Q ss_pred CCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHH
Q 018300 165 ENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML 243 (358)
Q Consensus 165 ~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~l 243 (358)
.++| .+..++|. .+++.++..++++||.|++-...+.+-+. ..+..| +.++|++.| ...+|+|.|
T Consensus 122 ~~~w--diiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~--------s~~a~g--v~~ipv~md--~~Gi~pE~l 187 (472)
T KOG0634|consen 122 YKNW--DIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQ--------SMEALG--VKIIPVKMD--QDGIDPESL 187 (472)
T ss_pred CCCc--eEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHH--------hccccC--ceEEecccc--CCCCCHHHH
Confidence 4556 45566665 59999999999999999997654433221 233445 467787776 457899999
Q ss_pred HHHhhh--------cCCeEEEEcCC-C--CCCCCC---HHHHHHHHHHcCCEEEEeccccccccccC-------------
Q 018300 244 EKTAIL--------FRPKLIIAGAS-A--YPRDFD---YPRMRQIADAVGALLMMDMAHISGLVAAS------------- 296 (358)
Q Consensus 244 e~~i~~--------~~~klIi~~~s-~--~~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g------------- 296 (358)
++.+.. .+|+++++=++ . +|.... =++|.++|++|+++++.|..++. |-...
T Consensus 188 ~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~-Lq~~~y~~~~~~~~p~~s 266 (472)
T KOG0634|consen 188 EEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYF-LQMNTYNPSLELESPAHS 266 (472)
T ss_pred HHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccce-eeccccCCCccccCcccc
Confidence 988743 23667665322 2 333333 35799999999999999998653 11110
Q ss_pred -------CccCCCC---CCc-EEEEcCcCcC-ccCcEEEEEEeCC
Q 018300 297 -------VVADPFK---YCD-VVTTTTHKSL-RGPRGGMIFFKKD 329 (358)
Q Consensus 297 -------~~~~pl~---gaD-iv~~S~hK~L-~Gp~GG~I~~~~~ 329 (358)
..++.+. ... +-.-|++|-+ +|.|-|++.+++.
T Consensus 267 ~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~ 311 (472)
T KOG0634|consen 267 SSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSL 311 (472)
T ss_pred HHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHH
Confidence 0122222 122 4467999976 6778899999885
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.8e-05 Score=77.60 Aligned_cols=203 Identities=13% Similarity=0.058 Sum_probs=108.6
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc--
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-- 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~-- 190 (358)
.-+|.|.+++...+.. ....... ++.... ..+ ..+++.++++...+ ...+..||++|+..++.....
T Consensus 61 h~~p~v~~ai~~~~~~-~~~~~~~--~~~~~~----~~~-la~~l~~~~~~~~~---~v~f~~sGseA~e~AlklAr~~~ 129 (427)
T TIGR00508 61 YNHPRLNAAAQKQIDK-MSHVMFG--GFTHKP----AIE-LCQKLVKMTPNALD---CVFLADSGSVAVEVALKMALQYW 129 (427)
T ss_pred CCCHHHHHHHHHHHHh-cCCcccc--ccCCHH----HHH-HHHHHHhhCCCCCC---EEEEeCCcHHHHHHHHHHHHHHH
Confidence 4578888888776543 2111111 111111 222 34456677654322 245677999999998875321
Q ss_pred -----CC-CEEEecCCCCCcccccccccchhccccCCce-------------EEEEeceecCCC---CCCCHHHHHHHhh
Q 018300 191 -----PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-------------FESMPYRLDEST---GLVDYDMLEKTAI 248 (358)
Q Consensus 191 -----pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~---~~iD~d~le~~i~ 248 (358)
+| .+|+..+..|.|+.. + .....+.. ....+++..... ..-|++++++.+.
T Consensus 130 ~~~~~~~r~~il~~~~~yHG~t~-~------~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~ 202 (427)
T TIGR00508 130 QAKGEKNRQKFLTIRSGYHGDTF-G------AMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLME 202 (427)
T ss_pred HhhCCCCccEEEEEcCCcCCccH-h------hhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHH
Confidence 23 578877654433311 0 01111100 011111111000 0125677777775
Q ss_pred hc--CCeEEEEcC--CCCC-C----CCCHHHHHHHHHHcCCEEEEeccccccccccCCc--cCCCC-CCcEEEEcCcCcC
Q 018300 249 LF--RPKLIIAGA--SAYP-R----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSL 316 (358)
Q Consensus 249 ~~--~~klIi~~~--s~~~-~----~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~--~~pl~-gaDiv~~S~hK~L 316 (358)
.. +...|++++ +..+ . ..++++|.++|+++|+++|+|++| .|+...|.. ..-++ ..|+++ +.|.|
T Consensus 203 ~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~-tG~Gr~G~~~~~~~~~v~pDi~~--~gK~l 279 (427)
T TIGR00508 203 LHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIA-TGFGRTGKLFACEHAGVVPDILC--VGKAL 279 (427)
T ss_pred hcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCcCCccchhhhcCCCCCEEE--echhh
Confidence 32 345677765 3322 2 345899999999999999999999 465433322 11223 568886 57998
Q ss_pred ccC--cEEEEEEeCCCCchhHHHHHHhh
Q 018300 317 RGP--RGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 317 ~Gp--~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
.|- ..+.++.++ ++.+.++.
T Consensus 280 ~gG~~p~~a~~~~~------~~~~~~~~ 301 (427)
T TIGR00508 280 TGGYMTLSATVTTD------KVAQTISS 301 (427)
T ss_pred hcCcccceEEEEcH------HHHHHHhc
Confidence 442 346666665 56666654
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.4e-05 Score=75.52 Aligned_cols=202 Identities=16% Similarity=0.081 Sum_probs=104.4
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--cc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~ 190 (358)
.-+|.|.+++.+.+......+.. .+ .++ .+....+++.+++.....+ ...+++|||+|+.+++... ..
T Consensus 70 h~~p~v~~ai~~q~~~~~~~~~~---~~-~~~----~~~~la~~L~~~~p~~~~~--~v~f~~sGseA~e~AlklAr~~t 139 (451)
T PRK06918 70 HSHPKVKEALHKQVDQYIHTGFN---VM-MYE----PYIELAEKLAALAPGSFDK--KVLFLNSGAEAVENAVKIARKYT 139 (451)
T ss_pred CCCHHHHHHHHHHHHhccCcccc---cc-ccH----HHHHHHHHHHHhCCCCCCC--EEEEcCCcHHHHHHHHHHHHHHh
Confidence 45888999988776542111110 01 122 2233455677777533211 2456789999999998643 22
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCc-------------eEEEEeceecC--CCCCCC-------HHHHHHHhh
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDE--STGLVD-------YDMLEKTAI 248 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-------------~~~~~~~~~~~--~~~~iD-------~d~le~~i~ 248 (358)
...+|+.....|.|.-. + .+...+. .+..++++... ..+..+ ++.+++.+.
T Consensus 140 gr~~ii~~~~~yHG~t~-~------~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T PRK06918 140 KRQGIISFSRGFHGRTL-M------TMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFI 212 (451)
T ss_pred CCCcEEEECCCcCccch-h------hhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHH
Confidence 34567776543333210 0 1111110 01112222100 001100 123343331
Q ss_pred ----hcCCeEEEEcCCC--CCCC---CC-HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC----CCcEEEEcCcC
Q 018300 249 ----LFRPKLIIAGASA--YPRD---FD-YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHK 314 (358)
Q Consensus 249 ----~~~~klIi~~~s~--~~~~---~d-l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~----gaDiv~~S~hK 314 (358)
..+...|++++-. .|.. .+ +++|.++|+++|+++|.|+.+. |+...|.. .++. ..|++ ++.|
T Consensus 213 ~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~t-g~gr~g~~-~a~~~~~v~pDi~--t~sK 288 (451)
T PRK06918 213 SEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQT-GFARTGKY-FAIEHFDVVPDLI--TVSK 288 (451)
T ss_pred hhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CcCccCce-ehhHhcCCCCCEE--eeeh
Confidence 1234567776422 2321 12 8899999999999999999975 55434422 1222 36755 6679
Q ss_pred cC-ccCcEEEEEEeCCCCchhHHHHHHh
Q 018300 315 SL-RGPRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 315 ~L-~Gp~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
.| +|.+-|++++++ ++.+.+.
T Consensus 289 ~l~~G~pig~v~~~~------~i~~~~~ 310 (451)
T PRK06918 289 SLGAGVPISGVIGRK------EIMDESA 310 (451)
T ss_pred hhcCCCccEEEEEcH------HHHhccC
Confidence 98 456778888876 5555553
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00022 Score=79.11 Aligned_cols=205 Identities=11% Similarity=-0.002 Sum_probs=102.7
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~p 191 (358)
-+|.|.+|+.+.+..-. ...++ ..+. .. ...+++++++.-..+ ...+++|||+||..++... ...
T Consensus 600 ~hp~v~~Ai~~q~~~l~----~~~~~--~~~~---~~-elae~L~~~~p~~~~---~v~f~~SGsEA~e~AlklAr~~tg 666 (972)
T PRK06149 600 GHPRLAAAAARQWSLLN----TNSRF--HYAA---VA-EFSERLAALAPDGLD---TVFLVNSGSEANDLAIRLAWAASG 666 (972)
T ss_pred CCHHHHHHHHHHHHhcc----ccccc--cCHH---HH-HHHHHHHHhCCCCcC---EEEEeCCchHHHHHHHHHHHHhcC
Confidence 48899999877664321 11222 1222 22 234557777732221 2466789999999999732 223
Q ss_pred CCEEEecCCCCCccc-ccccccch--hcccc-CC--ceEEEEeceecCCCC---CCC-----HHHHHHHhhh-----cCC
Q 018300 192 HDRIMGLDLPHGGHL-SHGFMTPK--RRVSG-TS--IYFESMPYRLDESTG---LVD-----YDMLEKTAIL-----FRP 252 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~-s~~~~~~~--~~~~~-~g--~~~~~~~~~~~~~~~---~iD-----~d~le~~i~~-----~~~ 252 (358)
..+|++.+-.|.|.- .-...... ..... .. .++..++++-. ... ..| .+++++.++. .++
T Consensus 667 r~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i 745 (972)
T PRK06149 667 RRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNT-YRGRFRGADSAADYVRDVVAQLEELDASGRGL 745 (972)
T ss_pred CCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcc-cCCcCCCcccHHHHHHHHHHHHHHHhhcCCce
Confidence 356776654333221 00000000 00000 00 01111211100 000 111 2344433321 234
Q ss_pred eEEEEcC--CCCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCccCC---CC-CCcEEEEcCcCcCcc-CcE
Q 018300 253 KLIIAGA--SAYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---FK-YCDVVTTTTHKSLRG-PRG 321 (358)
Q Consensus 253 klIi~~~--s~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p---l~-gaDiv~~S~hK~L~G-p~G 321 (358)
..|++++ ++.|...+ ++++.++|++||+++|+|+.|+ |+.-.|..... ++ ..|++++ .|.|+| ...
T Consensus 746 AavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~t-GfGRtG~~~~a~e~~gv~PDivt~--gK~lg~G~Pl 822 (972)
T PRK06149 746 AGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQV-GYGRLGHYFWGFEQQGVVPDIITM--AKGMGNGHPL 822 (972)
T ss_pred EEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehh-cCCccCccchhhhhcCCCCCEEEe--cccccCCeee
Confidence 5677764 22344445 8999999999999999999994 33222321001 12 4688855 599954 345
Q ss_pred EEEEEeCCCCchhHHHHHHh
Q 018300 322 GMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 322 G~I~~~~~~~~~~~~~~~i~ 341 (358)
|++++++ ++.+.+.
T Consensus 823 ~av~~~~------~i~~~~~ 836 (972)
T PRK06149 823 GAVITRR------EIAEALE 836 (972)
T ss_pred EEEEEcH------HHHhhhc
Confidence 7777777 5666654
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00014 Score=74.06 Aligned_cols=91 Identities=18% Similarity=0.156 Sum_probs=54.3
Q ss_pred HHHHHHhhh---cCCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEE
Q 018300 241 DMLEKTAIL---FRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVV 308 (358)
Q Consensus 241 d~le~~i~~---~~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv 308 (358)
+.+++.+.. .++..|++++- +.|...+ +++++++|++||+++|+|+.|+ |+.-.|.. - .-++ ..|++
T Consensus 206 ~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~t-GfGRtG~~~a~~~~gv~PDiv 284 (456)
T PRK07480 206 RQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVIC-GFGRTGEWFGSQHFGIKPDLM 284 (456)
T ss_pred HHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcCcchhhhhhcCCCCCee
Confidence 556554432 23456777642 2233333 8999999999999999999986 44222321 1 1122 45887
Q ss_pred EEcCcCcCccC--cEEEEEEeCCCCchhHHHHHH
Q 018300 309 TTTTHKSLRGP--RGGMIFFKKDPVLGVELESAI 340 (358)
Q Consensus 309 ~~S~hK~L~Gp--~GG~I~~~~~~~~~~~~~~~i 340 (358)
++ .|.|+|- .-|.+++++ ++.+.+
T Consensus 285 ~~--gK~l~gG~~Pi~av~~~~------~i~~~~ 310 (456)
T PRK07480 285 TI--AKGLTSGYIPMGAVGVGD------RVAEVL 310 (456)
T ss_pred ee--ehhhccCCccceEEEEcH------HHHHHH
Confidence 66 5999652 345555555 566555
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00018 Score=73.20 Aligned_cols=202 Identities=11% Similarity=0.053 Sum_probs=107.2
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc---
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--- 189 (358)
+-+|.|.+++...+.. ....... . + .++ ......+++.++++.... ...+.+|||+|+..++....
T Consensus 70 h~~p~v~~Ai~~ql~~-~~~~~~~-~-~-~~~----~~~~lAe~L~~~~p~~~~---~v~f~~sGseAve~AlKlA~~~~ 138 (453)
T PRK06943 70 HANPRINAALKDQLDT-LEHAMLA-G-C-THE----PAIELAERLAALTGGTLG---HAFFASDGASAVEIALKMSFHAW 138 (453)
T ss_pred CCCHHHHHHHHHHHHh-cCCcccc-c-c-CCH----HHHHHHHHHHHhCCCCCC---EEEEeCCCHHHHHHHHHHHHHHH
Confidence 4578888888776643 2111110 0 1 122 222245567777764322 24567799999999987541
Q ss_pred ----cC-CCEEEecCCCCCcccccccccchhccccCCc------------eEEEEeceecCC--CC-------CCCHHHH
Q 018300 190 ----KP-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDES--TG-------LVDYDML 243 (358)
Q Consensus 190 ----~p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~~~~~~~~~--~~-------~iD~d~l 243 (358)
.+ ..+|+.....|.|. .. ..+...+. .+..++++.... .+ .-|++++
T Consensus 139 ~~rg~~~r~~Ii~~~~~yHG~-----t~--gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 211 (453)
T PRK06943 139 RNRGRGDKREFVCLANGYHGE-----TI--GALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADV 211 (453)
T ss_pred HHhCCCCCCEEEEECCCcCCC-----cH--HhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHH
Confidence 12 35788776433332 10 01111110 011222221000 00 0134677
Q ss_pred HHHhhhc--CCeEEEEcCC--C-CCCC-C---CHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEc
Q 018300 244 EKTAILF--RPKLIIAGAS--A-YPRD-F---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTT 311 (358)
Q Consensus 244 e~~i~~~--~~klIi~~~s--~-~~~~-~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S 311 (358)
++.+... ++..|++++- . .|.. . -++++.++|++||+++|.|+.++ |+.-.|... .-++ ..|+++++
T Consensus 212 ~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~T-G~GRtG~~fa~~~~gv~PDivt~g 290 (453)
T PRK06943 212 RRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAV-GCGRTGTFFACEQAGVWPDFLCLS 290 (453)
T ss_pred HHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhh-CCCCCcchhHHHhCCCCCCeEeee
Confidence 7776532 4556777652 2 2322 2 28999999999999999999976 442233211 1123 56899775
Q ss_pred CcCcCccC--cEEEEEEeCCCCchhHHHHHHh
Q 018300 312 THKSLRGP--RGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 312 ~hK~L~Gp--~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
|.|.|- ..|.+++++ ++.+.+.
T Consensus 291 --Kgl~gG~~Pi~av~~~~------ei~~~~~ 314 (453)
T PRK06943 291 --KGISGGYLPLSLVLSRD------AIFAAFY 314 (453)
T ss_pred --hhhccCcccceEEEEcH------HHHHhhc
Confidence 988542 456677776 5665554
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.9e-05 Score=74.46 Aligned_cols=91 Identities=16% Similarity=0.047 Sum_probs=57.8
Q ss_pred HHHHHHhhhcCCeEEEEcCC--C-CCC----CCCHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEE
Q 018300 241 DMLEKTAILFRPKLIIAGAS--A-YPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTT 310 (358)
Q Consensus 241 d~le~~i~~~~~klIi~~~s--~-~~~----~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~ 310 (358)
+.+++.+. .+...|++++- . .|. ...++++.++|++||+++|+|++|. |+.-.|... ...+ ..|++++
T Consensus 191 ~~~~~~~~-~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~t-G~GrtG~~~a~~~~gv~PDi~t~ 268 (422)
T PRK05630 191 RSLELLID-ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIAT-GFGRTGELFATLAAGVTPDIMCV 268 (422)
T ss_pred HHHHHHHh-hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccee-CCCcCchhhHHHhcCCCCCeeee
Confidence 34455443 35667777752 1 232 2238999999999999999999984 653233211 1122 4578844
Q ss_pred cCcCcCcc--CcEEEEEEeCCCCchhHHHHHHh
Q 018300 311 TTHKSLRG--PRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 311 S~hK~L~G--p~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
.|.|.| +.+|++++++ ++.+.+.
T Consensus 269 --gK~l~gG~~p~~av~~~~------~i~~~~~ 293 (422)
T PRK05630 269 --GKALTGGFMSFAATLCTD------KVAQLIS 293 (422)
T ss_pred --echhhcCccccceeeccH------HHHHHHh
Confidence 699955 5788888887 5655553
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00019 Score=73.31 Aligned_cols=203 Identities=17% Similarity=0.068 Sum_probs=104.4
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc---
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--- 189 (358)
.-+|.|.+|+...+..-. ...+...+ .++ .+....+++.+++..+.+ ...+.+|||+|+..++....
T Consensus 66 h~~p~v~~Av~~q~~~~~-~~~~~~~~--~~~----~~~~lAe~L~~~~p~~~~---~v~f~~sGSEAve~AlKlAr~~~ 135 (461)
T PRK07482 66 YGRTEVAEAIAEQAKELA-YYHTYVGH--GTE----ASITLSKRIIDRAPAGMS---KVYYGLSGSDANETQIKLVWYYN 135 (461)
T ss_pred CCCHHHHHHHHHHHHhcC-cccccccc--CCH----HHHHHHHHHHHhCCCCcC---EEEEeCchHHHHHHHHHHHHHHH
Confidence 347888888887665321 00110001 122 222245557777643222 24567899999999987542
Q ss_pred ---c-C-CCEEEecCCCCCcccccccccchhccccCCc------------eEEEEecee--c-CCCC-------CCCHHH
Q 018300 190 ---K-P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRL--D-ESTG-------LVDYDM 242 (358)
Q Consensus 190 ---~-p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~~~~~~--~-~~~~-------~iD~d~ 242 (358)
. + ..+|+.....|.|. +.+ .....+. .+..++++. + +..+ .-+++.
T Consensus 136 ~~~g~~~r~~Ii~~~~~YHG~-t~g------a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 208 (461)
T PRK07482 136 NVLGRPEKKKIISRWRGYHGS-GVV------TGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADE 208 (461)
T ss_pred HhcCCCCCceEEEecCccCCc-cHh------hhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHH
Confidence 1 2 35688776443332 100 1111110 011111110 0 0000 014577
Q ss_pred HHHHhhh---cCCeEEEEcCCC--CCCC-CC---HHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEE
Q 018300 243 LEKTAIL---FRPKLIIAGASA--YPRD-FD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTT 310 (358)
Q Consensus 243 le~~i~~---~~~klIi~~~s~--~~~~-~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~ 310 (358)
+++.+.. .++..|++++-. .|.. .+ +++|+++|++||+++|+|+.++ |+.-.|.. - .-++ ..|++++
T Consensus 209 l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~t-GfGRtG~~~a~~~~gv~PDiv~~ 287 (461)
T PRK07482 209 LEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVT-GFGRLGSMFGSDHYGIEPDLITV 287 (461)
T ss_pred HHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEecccc-CCCcCcchhhHHhcCCCCCEEEE
Confidence 7777642 235567776422 2322 22 8899999999999999999976 54222221 1 1123 5699986
Q ss_pred cCcCcCccC--cEEEEEEeCCCCchhHHHHHHh
Q 018300 311 TTHKSLRGP--RGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 311 S~hK~L~Gp--~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
+ |.|+|- .-|.+++++ ++.+.+.
T Consensus 288 g--Kgl~gG~~Pi~av~~~~------~i~~~~~ 312 (461)
T PRK07482 288 A--KGLTSAYAPLSGSIVGE------KVWDVLE 312 (461)
T ss_pred c--cccccCccccceeeecH------HHHHHHh
Confidence 5 999542 345555555 4555554
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00016 Score=73.70 Aligned_cols=203 Identities=15% Similarity=0.087 Sum_probs=104.9
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc---
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--- 189 (358)
+-+|.|.+|+.+.+.+-. +....+...++ .+..+.+++.+++..+.+ ...+.+|||+|+..++....
T Consensus 62 h~~p~i~~Ai~~q~~~~~---~~~~~~~~~~~----~~~~lae~L~~~~p~~~~---~v~f~~sGSEAve~AlKlAr~~~ 131 (459)
T PRK05965 62 YGQESIVEAAAEQMRELP---YATGYFHFGSE----PAIRLAAKLAERAPGSLN---HVYFTLGGSDAVDSAVRFIRHYW 131 (459)
T ss_pred CCCHHHHHHHHHHHHhcC---CcccccccCCH----HHHHHHHHHHhhCCCCcC---EEEEeCChhHHHHHHHHHHHHHH
Confidence 347889999887765321 11101111122 122244556777643322 23556799999999986531
Q ss_pred ---c-C-CCEEEecCCCCCcccccccccchhccccCC------------ceEEEEeceecCCC-CCCC--------HHHH
Q 018300 190 ---K-P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDEST-GLVD--------YDML 243 (358)
Q Consensus 190 ---~-p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~-~~iD--------~d~l 243 (358)
. + ..+|+..+..|.|.-. + .+...+ .....++++..... ..-| ++++
T Consensus 132 ~~~g~~~r~kii~~~~~YHG~t~-~------a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (459)
T PRK05965 132 NATGRPSKKQFISLERGYHGSSS-V------GAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAAL 204 (459)
T ss_pred HhcCCCCccEEEEecCCcCcccH-H------HHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHH
Confidence 1 2 3578877644333210 0 001111 00111221110000 0112 2567
Q ss_pred HHHhhhc---CCeEEEEcCCC--CCCCC-C---HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEc
Q 018300 244 EKTAILF---RPKLIIAGASA--YPRDF-D---YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTT 311 (358)
Q Consensus 244 e~~i~~~---~~klIi~~~s~--~~~~~-d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S 311 (358)
++.+... +...|++++-. .|... + +++++++|++||+++|.|+.++ |+.-.|..- .-++ ..|+++++
T Consensus 205 ~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~t-GfGRtG~~~a~~~~gv~PDiv~~g 283 (459)
T PRK05965 205 RAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVIT-GFGRTGPLFACEAEGVVPDLMTVA 283 (459)
T ss_pred HHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhc-cCccCchhhhHhhcCCCCCeEEec
Confidence 7776532 34567776422 23322 2 7999999999999999999976 542223211 1122 46898775
Q ss_pred CcCcCccC--cEEEEEEeCCCCchhHHHHHHh
Q 018300 312 THKSLRGP--RGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 312 ~hK~L~Gp--~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
|.|+|- .-|.+++++ ++.+.+.
T Consensus 284 --Kgl~gG~~Pi~av~~~~------~i~~~~~ 307 (459)
T PRK05965 284 --KGLTSGYVPMGAVLMSD------HVYQGIA 307 (459)
T ss_pred --hhhccCCcceeEEEEcH------HHHHHHh
Confidence 998543 456666666 5666554
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00016 Score=73.58 Aligned_cols=199 Identities=17% Similarity=0.100 Sum_probs=103.2
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh---c
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---L 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al---l 189 (358)
.-+|.|.+|+...+..-. +... .+ .++ .+..+.+++.++++... ...+.+||++|+..++... .
T Consensus 63 h~~p~v~~ai~~q~~~~~---~~~~-~~-~~~----~~~~lae~l~~~~~~~~----~v~f~~sGseA~e~AlklAr~~t 129 (451)
T PRK07678 63 YGRKELAEAAYEQLKTLS---YFPL-TQ-SHE----PAIKLAEKLNEWLGGEY----VIFFSNSGSEANETAFKIARQYH 129 (451)
T ss_pred CCCHHHHHHHHHHHHhcC---cccc-cc-CCH----HHHHHHHHHHHhCCCCC----EEEEeCCcHHHHHHHHHHHHHHH
Confidence 347888888877654321 1110 11 222 12224556777776532 2355679999999998653 2
Q ss_pred ----cCC-CEEEecCCCCCcccccccccchhccccCCc------------eEEEEeceecCCCC-------CCCH---HH
Q 018300 190 ----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDESTG-------LVDY---DM 242 (358)
Q Consensus 190 ----~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~-------~iD~---d~ 242 (358)
++| .+|+...-.|.|.-. + .+...+. .+..++++-. ... ..|. +.
T Consensus 130 ~~~g~~~r~~ii~~~~~yHG~t~-~------als~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 201 (451)
T PRK07678 130 AQKGEPHRYKFISRYRAYHGNSM-G------ALAATGQAQRKYKYEPLAPGFLHVPPPDC-YRMPGIESEDIYDLECVKE 201 (451)
T ss_pred HhcCCCCCcEEEEECCCcCCccH-H------HhhcCCCcccccccCCCCCCCEEeCCCcc-ccccccCChHHHHHHHHHH
Confidence 123 578876643333210 0 1111111 0111111100 000 0112 23
Q ss_pred HHHHhhh---cCCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc--cCCCC-CCcEEEE
Q 018300 243 LEKTAIL---FRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTT 310 (358)
Q Consensus 243 le~~i~~---~~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~--~~pl~-gaDiv~~ 310 (358)
+++.+.. .++..|++++- ..|...+ +++++++|++||+++|+|+.|. |+.-.|.. ..-++ ..|++++
T Consensus 202 l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~t-GfGRtG~~~~~~~~gv~PDivt~ 280 (451)
T PRK07678 202 IDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVIC-GFGRTGKAFGFMNYGVKPDIITM 280 (451)
T ss_pred HHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-cCCcCchhHHHHhcCCCCCEEEe
Confidence 5555541 23556777652 2333222 8999999999999999999985 33212211 01133 5689876
Q ss_pred cCcCcCccC--cEEEEEEeCCCCchhHHHHHHh
Q 018300 311 TTHKSLRGP--RGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 311 S~hK~L~Gp--~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
.|.|+|- .-|.+++++ ++.+.+.
T Consensus 281 --gK~lggG~~Pi~av~~~~------~i~~~~~ 305 (451)
T PRK07678 281 --AKGITSAYLPLSATAVKK------EIYEAFK 305 (451)
T ss_pred --ecccccCCcceeEEEEcH------HHHHHHh
Confidence 5998642 456677766 5666554
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00014 Score=73.46 Aligned_cols=202 Identities=14% Similarity=0.045 Sum_probs=104.9
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc---
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--- 189 (358)
+-.|.|.+++...+.+- . +.....+ .++ ... ...+++.+++....+ ...+.+||++|+..++....
T Consensus 60 h~~p~v~~ai~~q~~~~-~--~~~~~~~-~~~---~~~-~lae~L~~~~p~~~~---~v~f~~sGseAve~AlklAr~~~ 128 (429)
T PRK06173 60 YNHPRLNAAATNQLAKM-S--HIMFGGF-THE---PAV-ELAQKLLEILPPSLN---KIFFADSGSVAVEVAMKMALQYQ 128 (429)
T ss_pred CCCHHHHHHHHHHHHhc-C--Ccccccc-CCH---HHH-HHHHHHHhhCCCCcC---EEEEeCCchHHHHHHHHHHHHHH
Confidence 44788888887765432 1 1110001 122 122 234556666642221 24567899999999986532
Q ss_pred ----cCC-CEEEecCCCCCcccccccccchhccccCCc-------------eEEEEeceecCCC---CCCCHHHHHHHhh
Q 018300 190 ----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDEST---GLVDYDMLEKTAI 248 (358)
Q Consensus 190 ----~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~---~~iD~d~le~~i~ 248 (358)
++| .+|+.....|.|. +.+ ....++. .+..++++..... ..-+++.+++.+.
T Consensus 129 ~~~g~~~r~~ii~~~~~yHG~-t~~------a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~ 201 (429)
T PRK06173 129 QAKGEVQRTKFATIRSGYHGD-TWH------AMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLE 201 (429)
T ss_pred HHhCCCCCcEEEEECCCcCCc-chh------hhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHH
Confidence 133 4687776444332 111 1111110 0111222111000 0114566777775
Q ss_pred hc--CCeEEEEcCC--CC-CCC-C---CHHHHHHHHHHcCCEEEEeccccccccccCCc--cCCCC-CCcEEEEcCcCcC
Q 018300 249 LF--RPKLIIAGAS--AY-PRD-F---DYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSL 316 (358)
Q Consensus 249 ~~--~~klIi~~~s--~~-~~~-~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~--~~pl~-gaDiv~~S~hK~L 316 (358)
.. ++..|++++- .. |.. . -+++++++|++||+++|+|++| .|+.-.|.. ..-++ ..|+++ +.|.|
T Consensus 202 ~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~-tG~GrtG~~~a~~~~gv~PDiv~--~gK~l 278 (429)
T PRK06173 202 QKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIA-TGFGRTGKLFALEHAGVVPDIMC--IGKAL 278 (429)
T ss_pred hCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchh-cCCCcCCcchHHHhcCCCCCEEE--eehhh
Confidence 32 3556777752 22 222 2 2889999999999999999999 675333322 11122 468887 56998
Q ss_pred ccC--cEEEEEEeCCCCchhHHHHHHh
Q 018300 317 RGP--RGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 317 ~Gp--~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
.|- ..+.++.++ ++.+.+.
T Consensus 279 ~gG~~p~~a~~~~~------~i~~~~~ 299 (429)
T PRK06173 279 TGGYLTLSATITTE------AIAQTIC 299 (429)
T ss_pred hCCccccceEEecH------HHHHHHh
Confidence 532 455666665 4555553
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00011 Score=74.91 Aligned_cols=202 Identities=17% Similarity=0.090 Sum_probs=106.8
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc---
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--- 189 (358)
.-+|.|.+++...+..- ..+.. ....++ .+....+++++++..... ...+.+|||+|+..++....
T Consensus 72 h~~p~v~~Ai~~ql~~l-~~~~~---~~~~~~----~~~~lae~L~~~~p~~~~---~v~f~~SGseAve~AlklAr~~~ 140 (460)
T PRK06916 72 HQVPELDEAIREQLNKI-AHSTL---LGLANV----PSILLAEKLIEVVPEGLK---KVFYSDSGATAVEIAIKMAFQYW 140 (460)
T ss_pred CCCHHHHHHHHHHHHhC-CCccc---cccCCH----HHHHHHHHHHHhCCCCCC---EEEEeCCcHHHHHHHHHHHHHHH
Confidence 55888999988776542 11111 111122 222345567777753322 24667899999999987432
Q ss_pred ----cCC-CEEEecCCCCCcccccccccchhccccCCce------------EEEEeceec---CCCC------CCCHHHH
Q 018300 190 ----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY------------FESMPYRLD---ESTG------LVDYDML 243 (358)
Q Consensus 190 ----~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~------------~~~~~~~~~---~~~~------~iD~d~l 243 (358)
.+| .+|+.....|.|. .. ..+...+.. +..++++.. +..+ .-|++++
T Consensus 141 ~~~g~tgr~~ii~~~~~YHG~-----t~--~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l 213 (460)
T PRK06916 141 QNKGKPKKQRFVTLKNAYHGD-----TI--GAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEEL 213 (460)
T ss_pred HhcCCCCCcEEEEECCcCCcc-----cH--HhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHH
Confidence 233 5788776433332 10 011111110 111222100 0000 1235666
Q ss_pred HHHhhh--cCCeEEEEcCC---CCCCCC-C---HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEc
Q 018300 244 EKTAIL--FRPKLIIAGAS---AYPRDF-D---YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTT 311 (358)
Q Consensus 244 e~~i~~--~~~klIi~~~s---~~~~~~-d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S 311 (358)
++.++. .+...|++++- +.|... + ++++.++|+++|+++|.|+.|. |+.-.|... ..++ ..|++++
T Consensus 214 ~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~T-G~GRtG~~~a~~~~gv~PDiv~~- 291 (460)
T PRK06916 214 EELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVAT-GFGRTGKMFACEHENVTPDIMTA- 291 (460)
T ss_pred HHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhh-CCCcCchhhHHHhcCCCCCeeee-
Confidence 776653 23456777651 223222 2 8999999999999999999985 542233211 1122 4688865
Q ss_pred CcCcCccC--cEEEEEEeCCCCchhHHHHHHh
Q 018300 312 THKSLRGP--RGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 312 ~hK~L~Gp--~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
.|.|.|- .-|.+++++ ++.+.+.
T Consensus 292 -gK~l~gG~~Pi~av~~~~------ei~~~~~ 316 (460)
T PRK06916 292 -GKGLTGGYLPIAITVTTD------EIYNAFY 316 (460)
T ss_pred -ehhhhcCccccceeeecH------HHHHHhh
Confidence 5988542 346666666 5555543
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.5e-06 Score=80.93 Aligned_cols=163 Identities=15% Similarity=0.086 Sum_probs=92.8
Q ss_pred HHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhc--cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC
Q 018300 157 ALAAFNLDENKWGVNVQPLSGS-PANFEVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (358)
Q Consensus 157 la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all--~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~ 233 (358)
+.+..|+....- +.+. .-.| ..+.+++.++- ..++.|+.+..+| .|. .+.+..+|....+++-...+
T Consensus 65 ~~~~~G~~~~~~-~~~v-P~atgm~l~l~l~~l~~r~~a~~Viw~ridq---kSc-----~kai~~AGl~~~vV~~~~~~ 134 (389)
T PF05889_consen 65 ALRLAGLRSVKS-CFVV-PMATGMSLTLCLLALRMRPKAKYVIWPRIDQ---KSC-----FKAIERAGLEPVVVENVLEG 134 (389)
T ss_dssp HHHHTTHTTHCE-EEEE-SS-HHHHHHHHHHHHHHHCT--EEEEEEEET---HHH-----HHHHHHTT-EEEEE-EEEET
T ss_pred HHHHcCCccccc-eEEE-ecccccHHHHHHHHHhcccCCceEEEeeccc---cch-----HHHHHhcCCeEEEeeccCCC
Confidence 445678874311 2333 3344 35666666663 4577888765533 232 24566778765555533443
Q ss_pred CCCCCCHHHHHHHhhhcC--CeEEEEcCCC--CCCCCC-HHHHHHHHHHcCCEEEEecccccccccc-CCccCC--CCCC
Q 018300 234 STGLVDYDMLEKTAILFR--PKLIIAGASA--YPRDFD-YPRMRQIADAVGALLMMDMAHISGLVAA-SVVADP--FKYC 305 (358)
Q Consensus 234 ~~~~iD~d~le~~i~~~~--~klIi~~~s~--~~~~~d-l~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~~~~p--l~ga 305 (358)
+.-..|.+.+++.+++.. +.+.++..+. +|+..| +++|+++|+++|++.++.+|+++--... ..+... ..-.
T Consensus 135 d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRv 214 (389)
T PF05889_consen 135 DELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRV 214 (389)
T ss_dssp TEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTC
T ss_pred CeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCc
Confidence 434678889998886543 3455555443 688888 9999999999999999999976500000 000000 0146
Q ss_pred cEEEEcCcCcCccCcEEEEEEeCC
Q 018300 306 DVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 306 Div~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
|+++-|+-|.|--|-||.++...+
T Consensus 215 da~vqS~dkNF~VPvGgai~As~~ 238 (389)
T PF05889_consen 215 DAFVQSTDKNFMVPVGGAIMASFD 238 (389)
T ss_dssp SEEEEEHHHHHCEESSHEEEEESS
T ss_pred ceeeeecCCCEEecCCCcEEEecC
Confidence 899999999998888866665544
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.8e-05 Score=76.57 Aligned_cols=171 Identities=17% Similarity=0.152 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh---ccCC----------CEEEecCCCCCcccccccccchh
Q 018300 149 LETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---LKPH----------DRIMGLDLPHGGHLSHGFMTPKR 215 (358)
Q Consensus 149 lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al---l~pG----------D~Vl~~~~~~ggh~s~~~~~~~~ 215 (358)
+|..+-.+..++.|-+... ..++..+|+.+|.-++.+- .-|+ +-|+.++- .+|+|.- +
T Consensus 142 mE~~vl~km~~ivGw~~~~--DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSe--esHYSi~-----k 212 (510)
T KOG0629|consen 142 MEEEVLAKMREIVGWEEGG--DGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSE--ESHYSIK-----K 212 (510)
T ss_pred ehHHHHHHHHHHhCCCCCC--CceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecc--cchhhHH-----H
Confidence 4555555667777877631 3577788888877766542 1122 34554432 3665531 2
Q ss_pred ccccCCce-EEEEeceecCCCCCCCHHHHHHHhhhcC-----CeEEEE--cCCCCCCCCCHHHHHHHHHHcCCEEEEecc
Q 018300 216 RVSGTSIY-FESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIA--GASAYPRDFDYPRMRQIADAVGALLMMDMA 287 (358)
Q Consensus 216 ~~~~~g~~-~~~~~~~~~~~~~~iD~d~le~~i~~~~-----~klIi~--~~s~~~~~~dl~~I~~ia~e~g~~livD~A 287 (358)
.+.+.|.. -..+.++.+ +.|.+++++||+.|.+.+ |-+|-+ +.+.+|..-|++.|+++|++|+.+++||+|
T Consensus 213 aAa~lg~gtd~c~~v~t~-e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAA 291 (510)
T KOG0629|consen 213 AAAFLGLGTDHCIKVKTD-ERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAA 291 (510)
T ss_pred HHHHhccCCceeEEeccc-ccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecc
Confidence 33444432 133445566 578999999999886543 333332 233467777899999999999999999998
Q ss_pred ccccccccCCccCCC---CCCcEEEEcCcCcCccCc-EEEEEEeCC
Q 018300 288 HISGLVAASVVADPF---KYCDVVTTTTHKSLRGPR-GGMIFFKKD 329 (358)
Q Consensus 288 h~~Gl~~~g~~~~pl---~gaDiv~~S~hK~L~Gp~-GG~I~~~~~ 329 (358)
-.-|+......-..+ +-+|-++-+.||+++.|- -+.++++.+
T Consensus 292 wGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~ 337 (510)
T KOG0629|consen 292 WGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREE 337 (510)
T ss_pred cccccccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHH
Confidence 665454322211222 368999999999988773 455665554
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00016 Score=73.76 Aligned_cols=196 Identities=16% Similarity=0.099 Sum_probs=101.3
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--cc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~ 190 (358)
.-+|.|.+|+.+.+.+-. +....++. .+ ...+ ..+++.+++..... ...+.+|||+|+..++... ..
T Consensus 69 h~~p~i~~Ai~~ql~~~~---~~~~~~~~-~~---~~~~-lae~L~~~~p~~~~---~v~f~~SGsEA~e~AlklAr~~t 137 (457)
T PRK05639 69 YSHPKLVKAVQEQVALIQ---HSMIGYTH-SE---RAIR-VAEKLAEISPIENP---KVLFGLSGSDAVDMAIKVSKFST 137 (457)
T ss_pred CCCHHHHHHHHHHHHhcc---ccccCccC-CH---HHHH-HHHHHHhhCCCCcC---EEEEeCchHHHHHHHHHHHHHhc
Confidence 347888888877665321 11111111 12 1222 34556677654322 2456789999999998654 23
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCC-------------ceEEEEeceecCC-----CCCCCH--------HHHH
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-------------IYFESMPYRLDES-----TGLVDY--------DMLE 244 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~-----~~~iD~--------d~le 244 (358)
...+|+...-.|.| +... .+...+ ..+..++++.... +..-|. +.++
T Consensus 138 gr~~ii~~~~~yHG-----~t~~--a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le 210 (457)
T PRK05639 138 RRPWILAFIGAYHG-----QTLG--ATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLE 210 (457)
T ss_pred CCCeEEEECCCcCC-----ccHH--HHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHH
Confidence 34577776543322 1100 011110 0122233321000 000122 2344
Q ss_pred HHhh-----hcCCeEEEEcCC--CCCCCC----CHHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEE
Q 018300 245 KTAI-----LFRPKLIIAGAS--AYPRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTT 310 (358)
Q Consensus 245 ~~i~-----~~~~klIi~~~s--~~~~~~----dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~ 310 (358)
+.+. ..+...|++++- ..|... -++++.++|+++|+++|+|+.|+ |+.-.|.. . ..++ ..|+++
T Consensus 211 ~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~GrtG~~~a~~~~gv~PDiv~- 288 (457)
T PRK05639 211 NYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQT-GIGRTGKWFASEWFEVKPDLII- 288 (457)
T ss_pred HHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-ccCcCchHHHHHhcCCCCCEEE-
Confidence 4432 124556777642 123222 28999999999999999999998 65333321 1 1123 578888
Q ss_pred cCcCcCc-cCcEEEEEEeCC
Q 018300 311 TTHKSLR-GPRGGMIFFKKD 329 (358)
Q Consensus 311 S~hK~L~-Gp~GG~I~~~~~ 329 (358)
+.|.|+ |..-|+++++++
T Consensus 289 -~gK~l~gG~pi~av~~~~~ 307 (457)
T PRK05639 289 -FGKGVASGMGLSGVIGRKE 307 (457)
T ss_pred -echhhcCCCcceeEEehHH
Confidence 469996 434477777763
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00033 Score=71.20 Aligned_cols=202 Identities=16% Similarity=0.091 Sum_probs=106.8
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc---
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--- 189 (358)
+-+|.|.+++.+.+... ...+.. . + .++ .+....+++.+++....+ ...+.+|||+|+.+++....
T Consensus 47 h~hp~v~~Ai~~ql~~~-~~~~~~-~-~-~~~----~~~~lae~L~~~~p~~~~---~v~f~~sGsEAve~AlklAr~~~ 115 (447)
T PRK06917 47 HGVKEIADAIKEQAEEV-SFVYRS-Q-F-TSE----PAEKLAKKLSDLSPGDLN---WSFFVNSGSEANETAMKIAIQHF 115 (447)
T ss_pred CCCHHHHHHHHHHHhhC-cCcccc-c-c-CCH----HHHHHHHHHHHhCCCCCC---EEEEeCChHHHHHHHHHHHHHHH
Confidence 45888888887776542 111110 1 1 122 222345667777754322 23567899999999987541
Q ss_pred ----cCC-CEEEecCCCCCcccccccccchhccccCCc------------eEEEEecee------cCCCC---CCCHHHH
Q 018300 190 ----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRL------DESTG---LVDYDML 243 (358)
Q Consensus 190 ----~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~~~~~~------~~~~~---~iD~d~l 243 (358)
.+| ++|+.....| ||+... .+...+. .+..++++. +.+.. .-|++.+
T Consensus 116 ~~rg~t~r~~ii~~~~~y-----HG~t~~--als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 188 (447)
T PRK06917 116 QERGIQGKHKILSRWMSY-----HGITMG--ALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATEL 188 (447)
T ss_pred HhcCCCCCCEEEEECCCc-----CCccHH--HHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHH
Confidence 133 5788776433 332110 1111110 001111110 00000 0134566
Q ss_pred HHHhhhc---CCeEEEEcCCC--CC-CCC----CHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEE
Q 018300 244 EKTAILF---RPKLIIAGASA--YP-RDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTT 310 (358)
Q Consensus 244 e~~i~~~---~~klIi~~~s~--~~-~~~----dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~ 310 (358)
++.++.. ++..|++++-. .+ ... -++++.++|+++|+++|+|+.|. |+.-.|... .-++ ..|++++
T Consensus 189 e~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~t-GfGRtG~~~a~~~~gv~PDi~~~ 267 (447)
T PRK06917 189 ETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMT-GLGRTGAMFAMEHWGVEPDIMTL 267 (447)
T ss_pred HHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhh-CcCcccchhhHHhcCCCCCEEEe
Confidence 7766532 35567776532 22 222 28899999999999999999987 653233211 1122 4688766
Q ss_pred cCcCcCccC--cEEEEEEeCCCCchhHHHHHHh
Q 018300 311 TTHKSLRGP--RGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 311 S~hK~L~Gp--~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
.|.|+|- +.|.+++++ ++.+.+.
T Consensus 268 --gK~l~~G~~Pi~a~~~~~------~i~~~~~ 292 (447)
T PRK06917 268 --GKGLGAGYTPIAATVVSD------RVMEPIL 292 (447)
T ss_pred --eehhccCCcceEEEEEcH------HHHHHHh
Confidence 5999652 466777776 5655554
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00041 Score=77.24 Aligned_cols=201 Identities=17% Similarity=0.124 Sum_probs=103.9
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~p 191 (358)
-+|.|.+|+...+..-. ...+| .++ .+....+++++++....+ ...+++|||+|+..++... ...
T Consensus 639 ~hp~v~~Ai~~q~~~l~----~~~~~--~~~----~~~~lAe~L~~~~p~~~~---~v~f~nSGsEA~e~AlklAr~~tG 705 (1013)
T PRK06148 639 AHPRVVAAAARQAARLN----TNTRY--LHD----AIVAYAERLTATLPDGLT---VAFFVNSGSEANSLALRLARAHTG 705 (1013)
T ss_pred CCHHHHHHHHHHHhhcC----CcCCc--CCH----HHHHHHHHHHHhCCCCcC---EEEEeCCcHHHHHHHHHHHHHhcC
Confidence 37889988887665321 11122 122 222245567777653222 3456789999999998654 223
Q ss_pred CCEEEecCCCCCcccccccccchhccccCC------------ceEEEEece--ecCCCCCCC-------HHHHHHHhhh-
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYR--LDESTGLVD-------YDMLEKTAIL- 249 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~~~~~--~~~~~~~iD-------~d~le~~i~~- 249 (358)
..+|++.+-.|.|.-. + .+..++ ..+...+.+ ....-+..| .+.+++.++.
T Consensus 706 r~~ii~~~~~YHG~t~-~------a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 778 (1013)
T PRK06148 706 QRDAIVLDHAYHGTTT-E------LIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAM 778 (1013)
T ss_pred CCeEEEEcCCccCCCc-c------hhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhh
Confidence 4578777643333210 0 011111 001111110 000000011 1345554431
Q ss_pred ----cCCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEecccc-ccccccCCcc-CCCC-CCcEEEEcCcCcC
Q 018300 250 ----FRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHI-SGLVAASVVA-DPFK-YCDVVTTTTHKSL 316 (358)
Q Consensus 250 ----~~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~-~Gl~~~g~~~-~pl~-gaDiv~~S~hK~L 316 (358)
.++..|++++- +.|...+ ++++.++|+++|+++|.|+.|+ +|-.+.+.+- .-++ ..|++++ -|.|
T Consensus 779 ~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~--gK~l 856 (1013)
T PRK06148 779 AAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTM--GKPI 856 (1013)
T ss_pred hccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeee--cccc
Confidence 23556777642 2333333 8999999999999999999986 3322211111 1122 4688866 5998
Q ss_pred cc-CcEEEEEEeCCCCchhHHHHHHhh
Q 018300 317 RG-PRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 317 ~G-p~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+| ..-|.+++++ ++.+.++.
T Consensus 857 ggG~Plgav~~~~------ei~~~~~~ 877 (1013)
T PRK06148 857 GNGHPMGAVVTTR------EIADSFDN 877 (1013)
T ss_pred cCCcceEEEEEcH------HHHhhccC
Confidence 54 3457777776 56666543
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00089 Score=68.10 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=51.7
Q ss_pred CCeEEEEcCCC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcCcCcCccC--
Q 018300 251 RPKLIIAGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRGP-- 319 (358)
Q Consensus 251 ~~klIi~~~s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~hK~L~Gp-- 319 (358)
++..|++++-. .|...+ +++++++|+++|+++|.|+.++ |+.-.|.. . .-++ ..|+++++ |.|+|-
T Consensus 213 ~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~t-GfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~ 289 (449)
T PRK07481 213 TIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVT-GFGRTGSWFGSRGWGVKPDIMCLA--KGITSGYV 289 (449)
T ss_pred cEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhh-CcCcCchhhHhhhcCCCCCEEEEe--ecccCCCc
Confidence 35567776532 233222 8999999999999999999987 54222321 1 1122 46888775 998652
Q ss_pred cEEEEEEeCCCCchhHHHHHHh
Q 018300 320 RGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 320 ~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
.-|.+++++ ++.+.++
T Consensus 290 Pi~av~~~~------~i~~~~~ 305 (449)
T PRK07481 290 PLGATMVNA------RIADAFE 305 (449)
T ss_pred CceEEEEcH------HHHHHHh
Confidence 345666666 5666554
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00075 Score=68.86 Aligned_cols=194 Identities=18% Similarity=0.135 Sum_probs=102.3
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--cc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~ 190 (358)
+-+|.|.+++.+.+.. .. +...++ .++. +....++++++++...+ ...+.+||++|+.+++... ..
T Consensus 87 h~~p~v~~Ai~~ql~~-~~--~~~~~~--~~~~----~~~lae~L~~~~p~~~~---~v~f~~sGseAve~AlklAr~~t 154 (459)
T PRK06082 87 YGHPHVIEKVKEQMAK-LP--FSPRRF--TNET----AIECAEKLTEIAGGELN---RVLFAPGGTSAIGMALKLARHIT 154 (459)
T ss_pred CCCHHHHHHHHHHHHh-CC--CccCcc--CCHH----HHHHHHHHHHhCCCCCC---EEEECCCcHHHHHHHHHHHHHhc
Confidence 3588999998877653 22 111122 1232 22345567788753322 2456779999999998643 22
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCc------------eEEEEeceecCC--CCCCC------HHHHHHHhhhc
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDES--TGLVD------YDMLEKTAILF 250 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~~~~~~~~~--~~~iD------~d~le~~i~~~ 250 (358)
...+|+...-.|.|.- .+ .+...+. .+..++.+.... ....| ++.+++.+...
T Consensus 155 gr~~ii~~~~~yHG~t-~~------a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 227 (459)
T PRK06082 155 GNFKVVSLWDSFHGAS-LD------AISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKE 227 (459)
T ss_pred CCCEEEEEeCCCcCcc-HH------HHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcC
Confidence 3467877653332221 00 1111111 011122110000 00111 35577766422
Q ss_pred -CCeEEEEcCCC-CCC-CCC---HHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcCcCcCccC--
Q 018300 251 -RPKLIIAGASA-YPR-DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRGP-- 319 (358)
Q Consensus 251 -~~klIi~~~s~-~~~-~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~hK~L~Gp-- 319 (358)
+...|++++-. .+. ..+ +++++++|+++|+++|+|+.|+ |+.-.|.. - .-++ ..|+++ +.|.|+|-
T Consensus 228 ~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~t-G~GRtG~~fa~e~~gv~PDiv~--~gKgl~gG~~ 304 (459)
T PRK06082 228 GGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPN-GMGRTGEWFTHQAYGIEPDILC--IGKGLGGGLV 304 (459)
T ss_pred CCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchhhHhHhhCCCCCEEE--ecccccCCCC
Confidence 34566766421 122 334 8999999999999999999987 55323321 1 1122 468887 56999652
Q ss_pred cEEEEEEeC
Q 018300 320 RGGMIFFKK 328 (358)
Q Consensus 320 ~GG~I~~~~ 328 (358)
..|.+++++
T Consensus 305 P~~av~~~~ 313 (459)
T PRK06082 305 PIAAMITKD 313 (459)
T ss_pred cceEEEEcH
Confidence 345666665
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0003 Score=71.84 Aligned_cols=92 Identities=21% Similarity=0.172 Sum_probs=55.7
Q ss_pred HHHHHHhhh---cCCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCC-c--cCCCC-CCcE
Q 018300 241 DMLEKTAIL---FRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-V--ADPFK-YCDV 307 (358)
Q Consensus 241 d~le~~i~~---~~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~--~~pl~-gaDi 307 (358)
+.+++.+.. .++..|++++- +.|...+ ++++.++|++||+++|+|+.|+ |+.-.|. + ..-++ ..|+
T Consensus 207 ~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~t-GfGRtG~~~~~~~~~gv~PDi 285 (466)
T PRK07036 207 DEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVT-GFGRLGHFFASEAVFGIQPDI 285 (466)
T ss_pred HHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechh-CCCcCchhhhhhhhcCCCCCE
Confidence 345555432 23556777653 2333333 8999999999999999999985 4322221 1 11123 4688
Q ss_pred EEEcCcCcCccC--cEEEEEEeCCCCchhHHHHHHh
Q 018300 308 VTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 308 v~~S~hK~L~Gp--~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
+++ .|.|+|- +-|.+++++ ++.+.+.
T Consensus 286 vt~--gK~l~gG~~Pi~av~~~~------~i~~~~~ 313 (466)
T PRK07036 286 ITF--AKGLTSGYQPLGAVIISE------RLLDVIS 313 (466)
T ss_pred EEE--ccccccCccccEEEEEcH------HHHHHHh
Confidence 866 4998652 345666666 5666554
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00063 Score=69.06 Aligned_cols=92 Identities=22% Similarity=0.228 Sum_probs=56.6
Q ss_pred HHHHHHhhh---cCCeEEEEcCCC---CCCCC----CHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcE
Q 018300 241 DMLEKTAIL---FRPKLIIAGASA---YPRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDV 307 (358)
Q Consensus 241 d~le~~i~~---~~~klIi~~~s~---~~~~~----dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDi 307 (358)
+++++.+.. .++..|++++-. .|... -++++.++|+|||+++|+|+.|. |+.-.|.+. .-++ ..|+
T Consensus 186 ~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-GfGRtG~~~a~~~~gv~PDi 264 (443)
T PRK07483 186 DELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMC-GMGRTGTLFACEEDGVAPDL 264 (443)
T ss_pred HHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEeccee-CcccCcHHHHHhhcCCCCCe
Confidence 456665532 234567776532 13222 28999999999999999999987 542233211 1122 4688
Q ss_pred EEEcCcCcCccC--cEEEEEEeCCCCchhHHHHHHh
Q 018300 308 VTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 308 v~~S~hK~L~Gp--~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
+++ .|.|.|- +-|.+++++ ++.+.+.
T Consensus 265 v~~--gK~l~gG~~Pi~av~~~~------~i~~~~~ 292 (443)
T PRK07483 265 VTI--AKGLGAGYQPIGAVLASD------RIYDAIA 292 (443)
T ss_pred eee--hhhhccCccccEEEEEcH------HHHHHHh
Confidence 877 4998543 456666766 5666554
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00055 Score=69.95 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=58.1
Q ss_pred HHHHHHHhhhc--CCeEEEEcC-C--CCCCCC----CHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcE
Q 018300 240 YDMLEKTAILF--RPKLIIAGA-S--AYPRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDV 307 (358)
Q Consensus 240 ~d~le~~i~~~--~~klIi~~~-s--~~~~~~----dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDi 307 (358)
++.+++.+... +...|++++ . +.|... -+++++++|+++|+++|.|+.+. |+.-.|..- ..++ ..|+
T Consensus 201 l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~T-GfGRtG~~~a~~~~gv~PDi 279 (466)
T PRK07030 201 FAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAV-GFGRTGTMFACEQAGIRPDF 279 (466)
T ss_pred HHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-CcCccccchHHHhcCCCCCE
Confidence 45667766532 345677775 2 223322 28999999999999999999976 442223211 1122 4689
Q ss_pred EEEcCcCcCccC--cEEEEEEeCCCCchhHHHHHHh
Q 018300 308 VTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 308 v~~S~hK~L~Gp--~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
++++ |.|+|- ..|.+++++ ++.+.+.
T Consensus 280 v~~g--Kgl~gG~~Pi~av~~~~------ei~~~~~ 307 (466)
T PRK07030 280 LCLS--KALTGGYLPLAAVLTTD------TVYQAFY 307 (466)
T ss_pred Eeee--hhccCCcccceEEEecH------HHHHHHh
Confidence 8774 998543 456677776 5666553
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00082 Score=65.79 Aligned_cols=200 Identities=15% Similarity=0.071 Sum_probs=98.4
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc----
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all---- 189 (358)
-+|.+.+++...+.... ...+. .+ -++ ...+ ..+++.++++-..+ ...+..||++|+..++....
T Consensus 33 ~~p~i~~ai~~~~~~~~-~~~~~--~~-~~~---~~~~-la~~L~~~~p~~~~---~v~f~~sGseAve~Alkla~~~~~ 101 (339)
T PF00202_consen 33 NHPEIAEAIAEQANKLN-YVSFS--GF-THP---EAAE-LAEKLAELFPGGLD---RVFFANSGSEAVEAALKLARQYHN 101 (339)
T ss_dssp T-HHHHHHHHHHHHHCS-SCSTT--TS-EEH---HHHH-HHHHHHHHSSTTEE---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CccccchhHHHHhhhcc-ccccc--ce-ecc---chhh-hhhhhhhccccccc---eeeeccCchHHHHHHHHHhhcccc
Confidence 46788888877654321 11111 01 122 1222 44567788843221 23556899999999986544
Q ss_pred ---c-CCCEEEecCCCCCccccccccc-----chhc-cccCCceEEEEeceecCC--CCCCCHHHHHHHh---hhcCCeE
Q 018300 190 ---K-PHDRIMGLDLPHGGHLSHGFMT-----PKRR-VSGTSIYFESMPYRLDES--TGLVDYDMLEKTA---ILFRPKL 254 (358)
Q Consensus 190 ---~-pGD~Vl~~~~~~ggh~s~~~~~-----~~~~-~~~~g~~~~~~~~~~~~~--~~~iD~d~le~~i---~~~~~kl 254 (358)
. ...+|+.....|.|.-. +... ..+. ..-....+..++++.... ...-..+++++.+ ...+...
T Consensus 102 ~~~~~~r~~il~~~~~yHG~t~-~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaa 180 (339)
T PF00202_consen 102 KRAYTGRRKILAFEGSYHGRTL-GALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAA 180 (339)
T ss_dssp HTHHHTTTEEEEETTTB-TSSH-HHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEE
T ss_pred cccccCCceEEEeeeeeeccCc-ccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEE
Confidence 2 34688887654433211 0000 0000 000001122233221000 0000011133222 2223456
Q ss_pred EEEcCCC--CCC----CCCHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCcc-CcEEEE
Q 018300 255 IIAGASA--YPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PRGGMI 324 (358)
Q Consensus 255 Ii~~~s~--~~~----~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~G-p~GG~I 324 (358)
|++++-. .|. ..-+++|.++|+|+|+++|+|+.++ |+.-.|... ..++ ..|+++++ |.|.| ..-+.+
T Consensus 181 vivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~t-G~gRtG~~~a~~~~gv~PDiv~~g--K~l~gG~p~sav 257 (339)
T PF00202_consen 181 VIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQT-GFGRTGKFFASEHYGVDPDIVTFG--KGLGGGLPISAV 257 (339)
T ss_dssp EEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTT-TTTTTSSSSGHHHHTSSSSEEEEE--GGGGTTSSEEEE
T ss_pred EEEeccccccCccccccchhhehcccccccccceecccccc-cccccCCccceecccccCcccccc--cchhhhhhcccc
Confidence 7777522 232 1227999999999999999999987 543233211 1112 46999887 99954 455777
Q ss_pred EEeC
Q 018300 325 FFKK 328 (358)
Q Consensus 325 ~~~~ 328 (358)
++++
T Consensus 258 ~~~~ 261 (339)
T PF00202_consen 258 LGSE 261 (339)
T ss_dssp EEEH
T ss_pred cccc
Confidence 7776
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00085 Score=68.10 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=48.0
Q ss_pred CCeEEEEcCC-CC-CCC-C---CHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCc-cCc
Q 018300 251 RPKLIIAGAS-AY-PRD-F---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPR 320 (358)
Q Consensus 251 ~~klIi~~~s-~~-~~~-~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~-Gp~ 320 (358)
+...|++.+. .. +.. . -+++++++|+++|+++|.|+.+. |+...|.+. .-++ ..|++++ .|.|+ |.+
T Consensus 206 ~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~t-GfGRtG~~~a~~~~gv~PDiv~~--gK~l~~G~P 282 (442)
T TIGR00709 206 KPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQA-GFGRSGTMFAFEHAGIEPDFVVM--SKAVGGGLP 282 (442)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCCCCchhHHHHcCCCCcEEEE--cccccCCcc
Confidence 3456666542 22 222 2 28999999999999999999986 553334321 1122 4688884 69984 445
Q ss_pred EEEEEEeC
Q 018300 321 GGMIFFKK 328 (358)
Q Consensus 321 GG~I~~~~ 328 (358)
-|++++++
T Consensus 283 igav~~~~ 290 (442)
T TIGR00709 283 LAVLLIAP 290 (442)
T ss_pred cEEEEEch
Confidence 57777765
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0008 Score=68.91 Aligned_cols=93 Identities=20% Similarity=0.159 Sum_probs=57.1
Q ss_pred HHHHHHHhhh--cCCeEEEEcCC---CCCCC-C---CHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcE
Q 018300 240 YDMLEKTAIL--FRPKLIIAGAS---AYPRD-F---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDV 307 (358)
Q Consensus 240 ~d~le~~i~~--~~~klIi~~~s---~~~~~-~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDi 307 (358)
++.+++.+.. .++..|++++. +.|.. . -+++++++|+++|+++|.|+.+. |+.-.|... .-++ ..|+
T Consensus 223 ~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~T-GfGRtG~~~a~e~~gv~PDi 301 (472)
T PRK08742 223 ADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIAT-GFGRTGTLFACEQAGVMPDL 301 (472)
T ss_pred HHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCccchHHHhcCCCCCE
Confidence 5666776642 24556777652 23332 2 28999999999999999999987 442233211 1122 4689
Q ss_pred EEEcCcCcCccC--cEEEEEEeCCCCchhHHHHHHh
Q 018300 308 VTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 308 v~~S~hK~L~Gp--~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
++++ |.|+|- .-|.+++++ ++.+.+.
T Consensus 302 v~~g--Kgl~gG~~Plaav~~~~------ei~~~~~ 329 (472)
T PRK08742 302 LCLS--KGLTGGFLPLSAVLATQ------QLYDAFL 329 (472)
T ss_pred EEEc--ccccCCCCCcceeeccH------HHHHHhh
Confidence 8775 998542 345566665 4555543
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00013 Score=67.88 Aligned_cols=157 Identities=18% Similarity=0.159 Sum_probs=101.1
Q ss_pred eEEeCCCHH-HHHHHHHHhccCC-CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhh
Q 018300 171 NVQPLSGSP-ANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI 248 (358)
Q Consensus 171 ~V~~~SGt~-A~~~a~~all~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~ 248 (358)
++...-|+. .+.++++..+-|| ++|+..+|.++=+.. -+...+. +++.+++++ +..+|.|++.+.++
T Consensus 88 nic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v--------~A~iNd~--eVvkvpl~p-dF~lnvdai~evl~ 156 (375)
T KOG0633|consen 88 NICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVV--------DAAINDA--EVVKVPLNP-DFSLNVDAIAEVLE 156 (375)
T ss_pred ceEEecCcHHHHHHHHhheecCCccceeecCCcceeEEE--------EeecCCc--eEEEecCCC-CccccHHHHHHHHh
Confidence 577777875 8888899999999 889988876653321 1123344 556666776 57899999998886
Q ss_pred hc-CCeEEEEcCCCCCC--CCCHHHHHHHHHHc-CCEEEEeccccccccccCCccCCCC-CCc-EEEEcCcCcC--ccCc
Q 018300 249 LF-RPKLIIAGASAYPR--DFDYPRMRQIADAV-GALLMMDMAHISGLVAASVVADPFK-YCD-VVTTTTHKSL--RGPR 320 (358)
Q Consensus 249 ~~-~~klIi~~~s~~~~--~~dl~~I~~ia~e~-g~~livD~Ah~~Gl~~~g~~~~pl~-gaD-iv~~S~hK~L--~Gp~ 320 (358)
.. .+|++++..+++|+ .+-.+.|.++-+-- +.++++|+|+. .+.+.+....-+. +-. ++..+++|++ +|-|
T Consensus 157 ~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYi-dFsg~~S~~~lV~kYpNLivlqTlSKsfGLAGiR 235 (375)
T KOG0633|consen 157 LDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYI-DFSGVESRMKLVKKYPNLIVLQTLSKSFGLAGIR 235 (375)
T ss_pred ccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeE-eeccccccchHhHhCCceeehhhhhhhcCcceeE
Confidence 54 68999887777764 44444444444322 79999999954 4332111000111 333 5667889985 6777
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccC
Q 018300 321 GGMIFFKKDPVLGVELESAINNAVF 345 (358)
Q Consensus 321 GG~I~~~~~~~~~~~~~~~i~~~~f 345 (358)
-|+-++.. .+.+-++++--
T Consensus 236 vG~~~~~~------~ia~iln~~Ka 254 (375)
T KOG0633|consen 236 VGYGAFPL------SIAEILNRAKA 254 (375)
T ss_pred eecccccH------HHHHHHHhccC
Confidence 78888776 45555555433
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00076 Score=68.90 Aligned_cols=198 Identities=14% Similarity=0.079 Sum_probs=100.2
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEe-CCCHHHHHHHHHHh--c
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGSPANFEVYTAI--L 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~-~SGt~A~~~a~~al--l 189 (358)
+-+|.|.+++...+.+..... .. .+ .++. ..+ ..+++.+++..+...-...+++ +||++|+..++... .
T Consensus 79 h~~p~v~~Ai~~ql~~~~~~~--~~-~~-~~~~---~~~-la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~ 150 (464)
T PRK06938 79 HNHPVVIEAIQQVLADELPLH--TL-DL-TTPV---KDQ-FVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTA 150 (464)
T ss_pred CCCHHHHHHHHHHHHhhhccc--cc-cc-CCHH---HHH-HHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHh
Confidence 348889999887765322111 10 11 1221 122 2344555543221000012344 69999999998754 2
Q ss_pred cCCCEEEecCCCCCcccccccccchhccccCC------------ceEEEEeceecCC--------C-CCCCHHHHHHHhh
Q 018300 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDES--------T-GLVDYDMLEKTAI 248 (358)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~~~~~~~~~--------~-~~iD~d~le~~i~ 248 (358)
....+|+...-.|.|. ... .+...+ ..+..++++.+.. + ...+.+.+++.+.
T Consensus 151 tgr~~ii~~~~~yHG~-----t~~--als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~ 223 (464)
T PRK06938 151 TGRSTVLSFQGGYHGM-----SQG--ALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLD 223 (464)
T ss_pred hCCCeEEEECCccCCc-----cHH--HHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHH
Confidence 2345777765433332 100 111111 0112233322100 0 0123567777775
Q ss_pred hc-----CCeEEEEcCC--CCCCCC----CHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcC
Q 018300 249 LF-----RPKLIIAGAS--AYPRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHK 314 (358)
Q Consensus 249 ~~-----~~klIi~~~s--~~~~~~----dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK 314 (358)
.. ++..|++++- ..|... -++++.++|+++|+++|.|+.++ |+.-.|... .-++ ..|+++++ |
T Consensus 224 ~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~t-GfGRtG~~~a~e~~gv~PDiv~~g--K 300 (464)
T PRK06938 224 DPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQS-GFGRTGKMFAFEHAGIIPDVVVLS--K 300 (464)
T ss_pred hhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCcHHHHHHhcCCCCCEEEee--c
Confidence 32 3466777642 122222 28999999999999999999976 542223211 1123 56898775 9
Q ss_pred cCcc-CcEEEEEEeC
Q 018300 315 SLRG-PRGGMIFFKK 328 (358)
Q Consensus 315 ~L~G-p~GG~I~~~~ 328 (358)
.|+| -.-|.+++++
T Consensus 301 glggG~PlsAv~~~~ 315 (464)
T PRK06938 301 AIGGSLPLAVVVYRE 315 (464)
T ss_pred cccCCCceEEEeehh
Confidence 8854 3346666665
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0012 Score=72.10 Aligned_cols=150 Identities=20% Similarity=0.156 Sum_probs=86.8
Q ss_pred HHHHHHHHcCCCCCCCcceEEeC-CCHHHHHHHHHHh-cc--CCCEEEecCCCCCcccccccccchhccccCCceEEEEe
Q 018300 153 CQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYTAI-LK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP 228 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~-SGt~A~~~a~~al-l~--pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~ 228 (358)
.+..++++.|.+-. |-... .+|.+-.+++++. .. +..+|++++..|..+... .. ..+...| ++++.
T Consensus 129 ~Qtmi~~LtGm~va----NASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v---~~-t~~~~~g--~~i~~ 198 (954)
T PRK12566 129 FQQMTIDLTGLDLA----NASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSV---LR-TRAEGFG--FELVV 198 (954)
T ss_pred HHHHHHHHhCchhh----hhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHH---HH-HhhhcCC--cEEEE
Confidence 56678999999853 32223 3343333333333 22 256788876433222110 00 0112223 23332
Q ss_pred ceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCc
Q 018300 229 YRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD 306 (358)
Q Consensus 229 ~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaD 306 (358)
+++++.+.. ++-.|++.+++ +|...|+++|.+++|+.|++++ +++.- .+-+.+..|-+ |||
T Consensus 199 ------------~~~~~~~~~-~~~~v~vq~P~~~G~i~d~~~i~~~~h~~gal~~-~~~d~---laL~ll~~Pge~GAD 261 (954)
T PRK12566 199 ------------DAVDNLAAH-AVFGALLQYPDTHGEIRDLRPLIDQLHGQQALAC-VAADL---LSLLVLTPPGELGAD 261 (954)
T ss_pred ------------cchhhcCCC-CEEEEEEECCCCceEEccHHHHHHHHHHcCCEEE-EEeCH---HHHhCCCChhhcCCc
Confidence 333343332 45556666655 6888899999999999999866 44432 33233445666 999
Q ss_pred EEEEcCcC-----cCccCcEEEEEEeCC
Q 018300 307 VVTTTTHK-----SLRGPRGGMIFFKKD 329 (358)
Q Consensus 307 iv~~S~hK-----~L~Gp~GG~I~~~~~ 329 (358)
|++++.+- .++||..|++.++++
T Consensus 262 I~vG~~Q~fGvp~~~GGP~ag~~a~~~~ 289 (954)
T PRK12566 262 VVLGSTQRFGVPMGYGGPHAAYFACRDD 289 (954)
T ss_pred EEeeCCCcCCCCCCCCCCCeeeeeehHH
Confidence 99887653 357898999999874
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0023 Score=61.50 Aligned_cols=191 Identities=15% Similarity=0.151 Sum_probs=103.3
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-----
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI----- 188 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al----- 188 (358)
-+|.+++|+.+....-+- .++.+|. .+-....+.+.++||-+. .+..++|.+|+..++...
T Consensus 76 chpki~~aLqeq~~kLtl---ssrafYn------d~~~~f~~~vt~lf~~~k-----vlpmnTGaEa~Eta~KLaR~wgy 141 (427)
T KOG1402|consen 76 CHPKIIKALQEQADKLTL---SSRAFYN------DVLGEFAEYVTKLFGYDK-----VLPMNTGAEAVETACKLARKWGY 141 (427)
T ss_pred CCHHHHHHHHHHHhHhhh---hhHHHhh------hhHHHHHHHHHHhcCcce-----eeecccchhHHHHHHHHHHHHHH
Confidence 378899999877653321 1222322 122234567899999986 244568999999988543
Q ss_pred -cc--CCCE-EEecCCCCCcccccccccchhccccCCce-----EE-EEeceecCCCCCCCHHHHHHHhhhcCCeEEEEc
Q 018300 189 -LK--PHDR-IMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----FE-SMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258 (358)
Q Consensus 189 -l~--pGD~-Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-----~~-~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~ 258 (358)
.+ |.|+ +++... +++ ||... .++.++... |. ++|..++ .-..-|.++|+..++..+...++++
T Consensus 142 ~~K~ip~nka~il~~~---~nF-hGrT~--~ais~s~d~ds~~~fgp~~P~~~~-~v~Y~d~eale~~l~~~~vaaFivE 214 (427)
T KOG1402|consen 142 RKKNIPKNKAKILSAE---NNF-HGRTL--GAISLSTDPDSWDGFGPFLPGVVD-KVPYGDAEALEVALKSPNVAAFIVE 214 (427)
T ss_pred hhccCCccceeEEEec---ccc-cCcee--eeEEecCCcchhhccCCCCCCcce-eeccCCHHHHHHHhcCCCeeEEEee
Confidence 12 4443 333211 111 22110 122222211 00 0110000 0012366888888876555666665
Q ss_pred CCC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc-CCCC--CCcEEEEcCcCcCccC--cEEEEEEe
Q 018300 259 ASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPFK--YCDVVTTTTHKSLRGP--RGGMIFFK 327 (358)
Q Consensus 259 ~s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~-~pl~--gaDiv~~S~hK~L~Gp--~GG~I~~~ 327 (358)
+-- -|.+.| +++.+++|.+|++++|.|+.|. |+.-.|.+- ...+ .-|++.+. |.|.|. +-..++++
T Consensus 215 PIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQT-Gl~RTGk~la~d~env~PDivilg--KalSGG~~Pvsavl~~ 291 (427)
T KOG1402|consen 215 PIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQT-GLARTGKLLACDYENVRPDIVILG--KALSGGVYPVSAVLAD 291 (427)
T ss_pred ccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhh-cccccCcEEEeehhhcCCCeEEEe--ccccCCeeeeEEEEec
Confidence 422 233222 8999999999999999999987 765555421 1122 45888765 888652 22444455
Q ss_pred C
Q 018300 328 K 328 (358)
Q Consensus 328 ~ 328 (358)
+
T Consensus 292 ~ 292 (427)
T KOG1402|consen 292 D 292 (427)
T ss_pred H
Confidence 4
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0013 Score=66.51 Aligned_cols=83 Identities=18% Similarity=0.118 Sum_probs=51.7
Q ss_pred HHHHHHHhhh--cCCeEEEEcCC--CCCCC----CCHHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEE
Q 018300 240 YDMLEKTAIL--FRPKLIIAGAS--AYPRD----FDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVV 308 (358)
Q Consensus 240 ~d~le~~i~~--~~~klIi~~~s--~~~~~----~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv 308 (358)
++++++.+.. .++..|++++- +.|.. ..+++|.++|++||+++|+|+.|+ |+...|.. . ..++ ..|++
T Consensus 205 l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G~GrtG~~~a~~~~gv~PDi~ 283 (431)
T TIGR03251 205 LRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQT-GVGLTGTAWAYQQLGVQPDIV 283 (431)
T ss_pred HHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchh-ccCccchHHHHHhcCCCCCEE
Confidence 4455555542 24566777642 22322 248999999999999999999998 55333321 1 1223 57888
Q ss_pred EEcCcCcCccCcEEEEEEe
Q 018300 309 TTTTHKSLRGPRGGMIFFK 327 (358)
Q Consensus 309 ~~S~hK~L~Gp~GG~I~~~ 327 (358)
+++ |.+ |-+|++..+
T Consensus 284 ~~g--K~~--~~~g~~~~~ 298 (431)
T TIGR03251 284 AFG--KKT--QVCGIMAGR 298 (431)
T ss_pred Eec--ccC--ccceEEecc
Confidence 764 765 556777554
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0015 Score=66.72 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=48.9
Q ss_pred CHHHHHHHhhhc--CCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC---CC
Q 018300 239 DYDMLEKTAILF--RPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK---YC 305 (358)
Q Consensus 239 D~d~le~~i~~~--~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~---ga 305 (358)
+++.+++.+..+ +...|++++- ..|...+ +++++++|+++|+++|+|+.|. |+...|.. . .-++ ..
T Consensus 237 ~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~t-GfGrtG~~fa~e~~gv~~~P 315 (464)
T TIGR00699 237 CLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQT-GVGATGKFWAHEHWNLDDPP 315 (464)
T ss_pred HHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeee-CCCCCcchhHHHhcCCCCCC
Confidence 456677777543 3456777642 2344444 8999999999999999999985 65333321 1 1112 37
Q ss_pred cEEEEcCcCcCc
Q 018300 306 DVVTTTTHKSLR 317 (358)
Q Consensus 306 Div~~S~hK~L~ 317 (358)
|++++ .|.|.
T Consensus 316 Di~t~--gK~lg 325 (464)
T TIGR00699 316 DMVTF--SKKFQ 325 (464)
T ss_pred CEEEe--hhhhc
Confidence 88766 59884
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00045 Score=67.18 Aligned_cols=208 Identities=13% Similarity=0.139 Sum_probs=113.2
Q ss_pred cccccccCCCCcHHHHHHHhhhhhcccCCCCCC-CcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHH
Q 018300 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPG-KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (358)
Q Consensus 104 ~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg-~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~ 182 (358)
..++-+++..+++.|++.....+.+-...|.+- .+.+.+.++...+++ +++.++++|+++.+ +.+.+...++|.+..
T Consensus 6 ~~nFsaGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~-a~~~lreLl~iPd~-Y~VlflqGGat~qf~ 83 (365)
T COG1932 6 VYNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEE-AEKDLRELLNIPDD-YKVLFLQGGATGQFA 83 (365)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHH-HHHHHHHHhCCCCC-ceEEEEcCccHHHHH
Confidence 345667788889999998887776654434321 223334455455554 67889999999874 444444456677888
Q ss_pred HHHHHhccCCCE--EEecCCCCCcccccccccchhccccCCceEEEEece-e-cCCCCCCCHHHHHHHhhhcCCeEEEE-
Q 018300 183 EVYTAILKPHDR--IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR-L-DESTGLVDYDMLEKTAILFRPKLIIA- 257 (358)
Q Consensus 183 ~a~~all~pGD~--Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~-~-~~~~~~iD~d~le~~i~~~~~klIi~- 257 (358)
++..+|+.++-. |.. |+.+.-. .+.+...+......... . ......+|+++.+ +.+ +...|.+
T Consensus 84 ~~p~nLl~~~~~~yv~~------g~Ws~~a---~~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~-~~ayv~~~ 151 (365)
T COG1932 84 MAPMNLLGKRGTDYVDT------GAWSEFA---IKEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSD-NDAYVHFC 151 (365)
T ss_pred HHHHhhhcccCceeEee------eehhHhH---HHHHHHhcccccccccceeccCccCCCChhhcc--cCC-CccEEEEe
Confidence 888998766543 443 2222110 01111122101111100 0 1112245555443 221 2233433
Q ss_pred -cCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCCCCch
Q 018300 258 -GASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG 333 (358)
Q Consensus 258 -~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~~~~~ 333 (358)
+.+..|..++ ..-.+.. +.++++|++-. +. -.++| .-|+++++.+|.+ ||.| ++++.++
T Consensus 152 ~NeTi~Gv~v~--~~p~~~~--~~~~v~D~SS~--il-----sr~iDvsk~dviyagaQKnl-GpaGltvvIvr~----- 214 (365)
T COG1932 152 WNETISGVEVP--ELPDIGS--DGLLVADASSA--IL-----SRPIDVSKYDVIYAGAQKNL-GPAGLTVVIVRP----- 214 (365)
T ss_pred cCCcccceEcc--CCCCCCC--CceEEEecccH--Hh-----cCCCChhHcceEEEehhhcc-CccceEEEEEcH-----
Confidence 3344554433 1111111 28999999733 22 13455 7899999999997 5777 7777777
Q ss_pred hHHHHHHhhc
Q 018300 334 VELESAINNA 343 (358)
Q Consensus 334 ~~~~~~i~~~ 343 (358)
++.+++...
T Consensus 215 -~~l~r~~~~ 223 (365)
T COG1932 215 -DLLERAESY 223 (365)
T ss_pred -HHHhccccc
Confidence 566666554
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0026 Score=64.92 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=45.7
Q ss_pred CeEEEEcCC--CCCCC-CC---HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCcc-CcE
Q 018300 252 PKLIIAGAS--AYPRD-FD---YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PRG 321 (358)
Q Consensus 252 ~klIi~~~s--~~~~~-~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~G-p~G 321 (358)
...|++++- +.|.. .+ ++++.++|+++|+++|.|+.++ |+.-.|... ..++ ..|+++++ |.|+| .+-
T Consensus 226 iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~t-GfGRtG~~~a~~~~gv~PDivt~g--K~l~gG~Pi 302 (459)
T PRK06931 226 PAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQA-GFARTGKMFAFEHAGIEPDIIVMS--KAVGGGLPL 302 (459)
T ss_pred eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchh-cCCcCchHHHhhhcCCCCCEEEec--ccccCCcce
Confidence 456777642 12322 22 8999999999999999999986 442223211 1122 46888774 99854 234
Q ss_pred EEEEEeC
Q 018300 322 GMIFFKK 328 (358)
Q Consensus 322 G~I~~~~ 328 (358)
|.++.++
T Consensus 303 ~av~~~~ 309 (459)
T PRK06931 303 AVLGIKK 309 (459)
T ss_pred eeeeeHH
Confidence 5566554
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0022 Score=64.03 Aligned_cols=165 Identities=18% Similarity=0.110 Sum_probs=99.2
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCC------CCcceEEeCCCHHHHHHHHHHh-------ccCC-----------CEEEe
Q 018300 142 GNEYIDELETLCQKRALAAFNLDEN------KWGVNVQPLSGSPANFEVYTAI-------LKPH-----------DRIMG 197 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~------~~~v~V~~~SGt~A~~~a~~al-------l~pG-----------D~Vl~ 197 (358)
.++...+||...-+|+.+.++++.. ..|.-|...|++++++.++.+- ++.+ +-|+.
T Consensus 107 ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y 186 (511)
T KOG0628|consen 107 SSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAY 186 (511)
T ss_pred cCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEE
Confidence 4566789999999999999987531 0112344567788777776542 2223 22333
Q ss_pred -cCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcC-----CeEEEEcCCCC-C-CCCCHH
Q 018300 198 -LDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGASAY-P-RDFDYP 269 (358)
Q Consensus 198 -~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~-----~klIi~~~s~~-~-~~~dl~ 269 (358)
+|. +|.+. . ++....+...+.++ .+. +..++.+.|++++++.. |=.|+.+.-.. . ..-+++
T Consensus 187 ~SDq---ahssv---e--ka~~i~~VklR~l~--td~-n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~ 255 (511)
T KOG0628|consen 187 CSDQ---AHSSV---E--KACLIAGVKLRALP--TDE-NFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELE 255 (511)
T ss_pred ecCc---ccchH---H--HhHhhcceeEEEee--ccc-CcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHH
Confidence 332 23221 1 22234454444443 553 67889999998886533 22333332222 2 234599
Q ss_pred HHHHHHHHcCCEEEEeccccccccccCCcc---CCCCCCcEEEEcCcCcCc
Q 018300 270 RMRQIADAVGALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLR 317 (358)
Q Consensus 270 ~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~---~pl~gaDiv~~S~hK~L~ 317 (358)
+|..+|+++|++|++|+|++-.......+- .-++.+|-+.+..|||+.
T Consensus 256 elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~ 306 (511)
T KOG0628|consen 256 ELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLL 306 (511)
T ss_pred HhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeE
Confidence 999999999999999999662222222111 223478999999999963
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00072 Score=65.64 Aligned_cols=196 Identities=16% Similarity=0.136 Sum_probs=111.6
Q ss_pred cCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc
Q 018300 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 189 (358)
Q Consensus 110 s~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all 189 (358)
+.+.++..-..+|-. ..|.|.|+|. ...|.. .+++.||.++. +-..-|-.|-...+..++
T Consensus 56 GTgams~~qwaamm~-----GDEAYagsrs------~~~L~~----avkdifGfq~~-----iPthQGRgAE~Il~~i~i 115 (471)
T COG3033 56 GTGAMTDKQWAAMMR-----GDEAYAGSRS------YYALAD----AVKDIFGFQYT-----IPTHQGRGAENILIPILI 115 (471)
T ss_pred CcccccHHHHHHHhc-----cchhhccccc------HHHHHH----HHHHhcCceee-----eeccCCccHHHHHHHHHh
Confidence 344556666655531 2234545442 223433 46789998762 333456667666677777
Q ss_pred cCCCEEEecCC--CCCcccccccccchhccccCCceEEEEec------eec-CCCCCCCHHHHHHHhhhcCC---eEEEE
Q 018300 190 KPHDRIMGLDL--PHGGHLSHGFMTPKRRVSGTSIYFESMPY------RLD-ESTGLVDYDMLEKTAILFRP---KLIIA 257 (358)
Q Consensus 190 ~pGD~Vl~~~~--~~ggh~s~~~~~~~~~~~~~g~~~~~~~~------~~~-~~~~~iD~d~le~~i~~~~~---klIi~ 257 (358)
++|+.+...-. ..+.|+.... .-+...|..+.-++. .++ |-.|.+|+++|++++++..+ -.|++
T Consensus 116 k~~~~~pg~~~~~~sN~~FdTTr----~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~ 191 (471)
T COG3033 116 KKGEQEPGSKMVAFSNYHFDTTR----GHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVL 191 (471)
T ss_pred hhccccCCccccccccceecchh----HHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEE
Confidence 77765543110 1234544221 112233432222221 111 11368999999999976433 23433
Q ss_pred ---cCCCCCCC---CCHHHHHHHHHHcCCEEEEecccccccccc------CCccCC--------CCCCcEEEEcCcCcCc
Q 018300 258 ---GASAYPRD---FDYPRMRQIADAVGALLMMDMAHISGLVAA------SVVADP--------FKYCDVVTTTTHKSLR 317 (358)
Q Consensus 258 ---~~s~~~~~---~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~------g~~~~p--------l~gaDiv~~S~hK~L~ 317 (358)
+.+..|+. .+++++.+||++|+++++.|+|..+.-.+- +...-. +.+||-++.|.-|--.
T Consensus 192 tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~l 271 (471)
T COG3033 192 TITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGL 271 (471)
T ss_pred EEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccce
Confidence 33444543 457889999999999999999865432110 110001 1289999999999756
Q ss_pred cCcEEEEEEeCC
Q 018300 318 GPRGGMIFFKKD 329 (358)
Q Consensus 318 Gp~GG~I~~~~~ 329 (358)
.+-||+++.+++
T Consensus 272 vnmGGfl~~~D~ 283 (471)
T COG3033 272 VNMGGFLCFKDD 283 (471)
T ss_pred eccccEEEecCc
Confidence 678999999987
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0044 Score=61.10 Aligned_cols=205 Identities=20% Similarity=0.198 Sum_probs=106.2
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc--
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-- 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~-- 190 (358)
...|+|.++|..-+. +..+-.-+ |+ -.+ .++ +.+.+.+..+-...+ ...+++|||+||..++..-.+
T Consensus 72 hanpev~ral~~q~~-k~~hs~~~--~~-t~e---av~--l~~~l~~~~~~~~~~--rvff~nsGTeAne~ALK~Ark~~ 140 (433)
T KOG1401|consen 72 HANPEVARALAEQAK-KLGHSSNG--YF-TLE---AVE--LEEVLSAVLGKGSAE--RVFFCNSGTEANETALKFARKFT 140 (433)
T ss_pred CCCHHHHHHHHHHHh-hheeccCc--cc-cHH---HHH--HHHHHHhcccCCCcc--EEEEecCCcHHHHHHHHHHHHhh
Confidence 447888888876543 22111000 11 112 222 344455555322211 235678999999999864321
Q ss_pred ----CCC--EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC---CCCCHHHHHHHhhhcC--CeEEEEcC
Q 018300 191 ----PHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST---GLVDYDMLEKTAILFR--PKLIIAGA 259 (358)
Q Consensus 191 ----pGD--~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~iD~d~le~~i~~~~--~klIi~~~ 259 (358)
|-+ .|+.....|.|+. -+.... ......+..+++ +.|+. ..-|..+++++++.++ ...|++++
T Consensus 141 ~~~~~~~~t~~Iaf~nsyHG~t-lgals~-~~~s~y~~~~~p----~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEP 214 (433)
T KOG1401|consen 141 GKKHPEKKTKFIAFENSYHGRT-LGALSV-TGNSKYGLPFDP----IAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEP 214 (433)
T ss_pred cccCCccceeEEEEecCcCCcc-hhHHHh-hcccccCCCCCC----CCCceeecccCCHHHHHHHHHhCCCceEEEEEec
Confidence 223 3777654333321 111000 000111111111 11111 1347899999998766 34566654
Q ss_pred CC-CCC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCC--ccCCCC-CCcEEEEcCcCcCcc-CcEEEEEEeCC
Q 018300 260 SA-YPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV--VADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKD 329 (358)
Q Consensus 260 s~-~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~--~~~pl~-gaDiv~~S~hK~L~G-p~GG~I~~~~~ 329 (358)
-. .|. +.| +..|+++|+++|+++|.|+.+. |+.-.|. ...-+. .-|+.+. -|.|+| ..-|+...++
T Consensus 215 iqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~t-G~gR~g~~~a~e~~~~~PDI~t~--aK~L~gGlPigA~~v~~- 290 (433)
T KOG1401|consen 215 IQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQT-GLGRLGYGWAQEYFGVTPDITTV--AKPLGGGLPIGATGVRD- 290 (433)
T ss_pred ccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhh-CccccchHHHHHHhCcCCcceee--hhhccCCceeEEEeehH-
Confidence 22 222 223 6678899999999999999977 4432221 111122 3477654 498854 4556666666
Q ss_pred CCchhHHHHHHhhc
Q 018300 330 PVLGVELESAINNA 343 (358)
Q Consensus 330 ~~~~~~~~~~i~~~ 343 (358)
++.+.++..
T Consensus 291 -----kV~~~i~~~ 299 (433)
T KOG1401|consen 291 -----KVAEMISPG 299 (433)
T ss_pred -----HHHhhcCCC
Confidence 677777664
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0051 Score=62.50 Aligned_cols=83 Identities=17% Similarity=0.120 Sum_probs=51.6
Q ss_pred HHHHHHHhhh--cCCeEEEEcCC--CCCCC----CCHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEE
Q 018300 240 YDMLEKTAIL--FRPKLIIAGAS--AYPRD----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVV 308 (358)
Q Consensus 240 ~d~le~~i~~--~~~klIi~~~s--~~~~~----~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv 308 (358)
++++++.+.. .++..|++++- +.|.. ..+++|+++|++||+++|.|+.|. |+.-.|... .-++ ..|++
T Consensus 212 ~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t-GfGRtG~~~a~~~~gv~PDiv 290 (443)
T PRK08297 212 LAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQT-GVGLTGTAWAYQQLGVRPDIV 290 (443)
T ss_pred HHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-ccCccchHHHHHhcCCCCCEE
Confidence 4555666643 24567777642 22322 348999999999999999999986 542233210 1123 56888
Q ss_pred EEcCcCcCccCcEEEEEEe
Q 018300 309 TTTTHKSLRGPRGGMIFFK 327 (358)
Q Consensus 309 ~~S~hK~L~Gp~GG~I~~~ 327 (358)
++ .|.+ |-||++.++
T Consensus 291 ~~--gK~l--~~~a~l~~~ 305 (443)
T PRK08297 291 AF--GKKT--QVCGIMAGR 305 (443)
T ss_pred Ee--cccc--cccceecch
Confidence 75 5887 346666554
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0036 Score=61.60 Aligned_cols=173 Identities=17% Similarity=0.134 Sum_probs=89.0
Q ss_pred CcCC-CCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH--HHHHHH-HHhc----------cCCC--EEEecCC
Q 018300 137 KRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP--ANFEVY-TAIL----------KPHD--RIMGLDL 200 (358)
Q Consensus 137 ~r~~-~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~--A~~~a~-~all----------~pGD--~Vl~~~~ 200 (358)
.|.| ||.+- +-+ +|+..++++|++.+ +|+..+.|+ -++-++ .+++ ...+ +.|++.|
T Consensus 61 ~RNY~G~l~G---ipe-~r~l~a~llgv~~~----~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvP 132 (425)
T PF12897_consen 61 CRNYPGGLDG---IPE-ARELFAELLGVPPE----NVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVP 132 (425)
T ss_dssp TTSS-S-SS-----HH-HHHHHHHHHTS-GG----GEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES
T ss_pred ccCCCCccCC---hHH-HHHHHHHHhCCCHH----HEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCC
Confidence 4778 66653 333 56668999999985 454433322 111111 1221 1122 5688887
Q ss_pred CCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhh-hcCCeEEEEcCC-CCC--CCCC---HHHHHH
Q 018300 201 PHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI-LFRPKLIIAGAS-AYP--RDFD---YPRMRQ 273 (358)
Q Consensus 201 ~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~-~~~~klIi~~~s-~~~--~~~d---l~~I~~ 273 (358)
-|-.|++ ..+..|. +.++++.++ .-+|+|.+|+++. +...|-||+.+. +|| .... +++++.
T Consensus 133 GYDRHFa--------i~E~~Gi--emi~VpM~~--dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~ 200 (425)
T PF12897_consen 133 GYDRHFA--------ITEHFGI--EMIPVPMTE--DGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAA 200 (425)
T ss_dssp --HHHHH--------HHHHCT---EEEEEEEET--TEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHH
T ss_pred CchHHHH--------HHHhhCc--EEEecCCCC--CCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhc
Confidence 6665553 2244564 666766763 4689999999984 345688988542 233 3333 344444
Q ss_pred H-HHHcCCEEEEeccccccccccCC-cc---CCCC------CCc--EEEEcCcCc-CccCcEEEEEEeCC
Q 018300 274 I-ADAVGALLMMDMAHISGLVAASV-VA---DPFK------YCD--VVTTTTHKS-LRGPRGGMIFFKKD 329 (358)
Q Consensus 274 i-a~e~g~~livD~Ah~~Gl~~~g~-~~---~pl~------gaD--iv~~S~hK~-L~Gp~GG~I~~~~~ 329 (358)
+ +...+..++.|+|+++....... .. +.++ .-| +++.||+|- |+|-.-+++..+++
T Consensus 201 m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~ 270 (425)
T PF12897_consen 201 MKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEA 270 (425)
T ss_dssp S--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HH
T ss_pred CCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHH
Confidence 4 23569999999999987764321 11 2222 223 778899996 45555578887775
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0053 Score=66.77 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=56.4
Q ss_pred HHHHHHhhh-------cCCeEEEEcCC--C-CCCCC-C---HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-
Q 018300 241 DMLEKTAIL-------FRPKLIIAGAS--A-YPRDF-D---YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK- 303 (358)
Q Consensus 241 d~le~~i~~-------~~~klIi~~~s--~-~~~~~-d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~- 303 (358)
+.+++.++. .+...|++++- . .|... | +++++++|+++|+++|.|+.+. |+.-.|... .-++
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~T-GfGRtG~~fa~e~~gv 645 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFT-GLWRLGVESAWELLGC 645 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeeccc-CCCcccchhhHHhcCC
Confidence 456666542 23456777652 2 23322 2 7899999999999999999976 653334321 1122
Q ss_pred CCcEEEEcCcCcCccC--cEEEEEEeCCCCchhHHHHHH
Q 018300 304 YCDVVTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAI 340 (358)
Q Consensus 304 gaDiv~~S~hK~L~Gp--~GG~I~~~~~~~~~~~~~~~i 340 (358)
..|+++++ |.|.|- .-|.+++++ ++.+.+
T Consensus 646 ~PDIi~~g--KgLtgG~~Plaa~l~~~------~I~~~f 676 (817)
T PLN02974 646 KPDIACYA--KLLTGGLVPLAATLATE------EVFEAF 676 (817)
T ss_pred CCCEEeec--ccccCCCCccEEEEEcH------HHHHhh
Confidence 46898776 998542 446666665 555554
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0018 Score=62.60 Aligned_cols=158 Identities=19% Similarity=0.249 Sum_probs=100.2
Q ss_pred ceEEeCCCHHHHH--HHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHh
Q 018300 170 VNVQPLSGSPANF--EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA 247 (358)
Q Consensus 170 v~V~~~SGt~A~~--~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i 247 (358)
+.+++.|||.|+- +.|.+..-|+..|.+++|..|.|.- .....|..++...| .++.+..+|++.+-+.+
T Consensus 122 ~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~--------if~~ag~~~~~yrY-yd~~t~gld~~g~ledl 192 (427)
T KOG1411|consen 122 VTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKN--------IFKDAGLPVKFYRY-YDPKTRGLDFKGMLEDL 192 (427)
T ss_pred eEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCc--------cccccCcceeeeee-ccccccccchHHHHHHH
Confidence 5688889987544 4455556679999999998887642 12345655544444 35567889998876666
Q ss_pred hhcCCe-EEEEc-CCCCCC-----CCCHHHHHHHHHHcCCEEEEeccccccccccCCccCC------CC-CCc-EEEEcC
Q 018300 248 ILFRPK-LIIAG-ASAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP------FK-YCD-VVTTTT 312 (358)
Q Consensus 248 ~~~~~k-lIi~~-~s~~~~-----~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p------l~-gaD-iv~~S~ 312 (358)
.+.... +|++. ..++|+ ...+++|.++.++.+.+-+.|+|+- |+-.+...... ++ |.+ +++.|+
T Consensus 193 ~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQ-GfaSG~~d~DA~avR~F~~~g~~~~laQSy 271 (427)
T KOG1411|consen 193 GEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQ-GFASGDLDKDAQAVRLFVEDGHEILLAQSY 271 (427)
T ss_pred hcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhc-ccccCCchhhHHHHHHHHHcCCceEeehhh
Confidence 553333 45543 334554 3348999999999999999999844 65433221111 11 444 557799
Q ss_pred cCcC--ccCcEEE--EEEeCCCCchhHHHHHHhh
Q 018300 313 HKSL--RGPRGGM--IFFKKDPVLGVELESAINN 342 (358)
Q Consensus 313 hK~L--~Gp~GG~--I~~~~~~~~~~~~~~~i~~ 342 (358)
-|.| .|-|.|. |++++. +.+.++++
T Consensus 272 AKNMGLYgERvGa~svvc~~a-----d~A~rV~S 300 (427)
T KOG1411|consen 272 AKNMGLYGERVGALSVVCKDA-----DEAKRVES 300 (427)
T ss_pred hhhcchhhhccceeEEEecCH-----HHHHHHHH
Confidence 9996 5667553 466665 56665554
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0058 Score=61.69 Aligned_cols=93 Identities=22% Similarity=0.281 Sum_probs=56.0
Q ss_pred HHHHHHHhhhcCC---eEEEEcCCC---CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCc
Q 018300 240 YDMLEKTAILFRP---KLIIAGASA---YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCD 306 (358)
Q Consensus 240 ~d~le~~i~~~~~---klIi~~~s~---~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaD 306 (358)
.++|++++..+.| ..+++++-. .|...+ ++++.++|++||+++|.|+. +.|+--.|... .-.+ --|
T Consensus 200 a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV-~tGFGRTG~~FA~e~~gi~PD 278 (449)
T COG0161 200 ADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEV-ATGFGRTGKMFACEHAGIVPD 278 (449)
T ss_pred HHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecc-eeCCCcCchhhhhhhcCCCCC
Confidence 5678888876554 345555422 233222 89999999999999999997 44654444321 0011 347
Q ss_pred EEEEcCcCcCcc---CcEEEEEEeCCCCchhHHHHHHhh
Q 018300 307 VVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 307 iv~~S~hK~L~G---p~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+++.+ |.|.| |=++ +++++ ++.+.+..
T Consensus 279 i~~~a--KGLT~GY~Pl~a-~l~~~------~I~~~~~~ 308 (449)
T COG0161 279 ILCLA--KGLTGGYLPLSA-VLTSD------RIYEAFSD 308 (449)
T ss_pred eeeec--ccccccchhhHh-HhhhH------HHHHHHhc
Confidence 88655 98855 3334 44444 46565544
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.007 Score=59.46 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--C--CcEEEEcCcCcCc-cCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 268 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--Y--CDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 268 l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--g--aDiv~~S~hK~L~-Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+++..++|+++|.++|.|++|+ |+--.|-+ --++ + -|++ |.-|.++ |..-|.+++.+ ++++-+.+
T Consensus 235 lka~~~~v~k~Ggl~IaDEVqt-GfGRtG~~-wgfe~h~v~PDIv--TmAKgiGnG~Pl~AVvtt~------EIa~v~~~ 304 (442)
T KOG1404|consen 235 LKAAYKVVRKRGGLFIADEVQT-GFGRTGHM-WGFESHGVVPDIV--TMAKGIGNGFPLGAVVTTP------EIADVLNQ 304 (442)
T ss_pred HHHHHHHHHHcCCEEEehhhhh-cccccccc-ccccccCCCccHH--HHHhhccCCCcceeeecCH------HHHHHHHh
Confidence 8999999999999999999987 54333311 1233 2 3666 6669984 44446666666 67777776
Q ss_pred cc--CCcccccc
Q 018300 343 AV--FPGLQVGF 352 (358)
Q Consensus 343 ~~--f~g~q~~~ 352 (358)
.. |...+|.|
T Consensus 305 ~~~~fnTyggnP 316 (442)
T KOG1404|consen 305 KSSHFNTYGGNP 316 (442)
T ss_pred ccccccccCCCc
Confidence 54 45555555
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0034 Score=54.60 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHcC--C--CCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCC
Q 018300 148 ELETLCQKRALAAFN--L--DENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHG 203 (358)
Q Consensus 148 ~lE~~~~~~la~lfg--~--~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~g 203 (358)
++.+.+.+++.+.+| . +++ +|++++|+ .|+..++.++++|||.|++++|.|.
T Consensus 96 ~lR~AiA~~l~~~~g~~v~~~pd----~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~ 152 (153)
T PLN02994 96 NFRKAIANFMAEARGGRVKFDAD----MIVLSAGATAANEIIMFCIADPGDAFLVPTPYYA 152 (153)
T ss_pred HHHHHHHHHHHHHhCCCCccchh----heEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 577778888988888 3 342 46666665 5999999999999999999987654
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.023 Score=54.22 Aligned_cols=226 Identities=17% Similarity=0.148 Sum_probs=118.1
Q ss_pred hhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHH
Q 018300 102 FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 181 (358)
Q Consensus 102 ~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~ 181 (358)
-++|+-++--.--+|.|.+|...-+..- ....|+ ..+++-+-++...+.+-+ ..++.+++||++||
T Consensus 50 LDCInNVaHvghchp~VV~A~~kQmat~----~tN~RF-----lhd~lv~cA~~l~stlPe-----Lsvc~F~NSGSEAN 115 (452)
T KOG1403|consen 50 LDCINNVAHVGHCHPEVVRAGAKQMATI----STNNRF-----LHDELVQCARTLTSTLPE-----LSVCFFVNSGSEAN 115 (452)
T ss_pred HHHhhhhhhcccCCHHHHHHHHHHHhHh----cccchh-----hHHHHHHHHHHHhhcCCC-----ceEEEEecCCchhh
Confidence 3788887777778999988876544321 122232 234565533322233323 33678889999999
Q ss_pred HHHHHHh--ccCCCEEEecCCCCCcccccccccchhccccC-C------ceEEEEecee----------cCC--CCCCCH
Q 018300 182 FEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT-S------IYFESMPYRL----------DES--TGLVDY 240 (358)
Q Consensus 182 ~~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~-g------~~~~~~~~~~----------~~~--~~~iD~ 240 (358)
.++++.. ..+..-|++++-.|.||++... ...+..+. | .++.+.|.+- .++ .+..-.
T Consensus 116 DLALRLAR~ftkhqDvItldHAYHGHl~s~m--E~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Ya 193 (452)
T KOG1403|consen 116 DLALRLARNFTKHQDVITLDHAYHGHLQSVM--EVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYA 193 (452)
T ss_pred HHHHHHHHhhcccCceEEEechhccceeeee--eccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhh
Confidence 9998653 3344455666767788876321 10111111 1 1122222110 000 011112
Q ss_pred HHHHHHhhhc--CCe---EEEEc-C-CCCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC----CC
Q 018300 241 DMLEKTAILF--RPK---LIIAG-A-SAYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YC 305 (358)
Q Consensus 241 d~le~~i~~~--~~k---lIi~~-~-s~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~----ga 305 (358)
|.+++.+.+. +-. ..+.. . |-.|.+++ ++++++..+.+|-+.|.|+.|. |+.--|...-.+. --
T Consensus 194 d~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQv-GFGRvG~hyWafq~y~fiP 272 (452)
T KOG1403|consen 194 DPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQV-GFGRVGSHYWAFQTYNFIP 272 (452)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhh-cccccchhhhhhhhhcccc
Confidence 4555554321 111 11221 1 22344444 6788888899999999999986 4322221111122 24
Q ss_pred cEEEEcCcCcC-ccCcEEEEEEeCCCCchhHHHHHHhh---ccCCcccccc
Q 018300 306 DVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINN---AVFPGLQVGF 352 (358)
Q Consensus 306 Div~~S~hK~L-~Gp~GG~I~~~~~~~~~~~~~~~i~~---~~f~g~q~~~ 352 (358)
||++ .-|.+ .|.+.+.+.+.+ ++++.+.. ..|...-|+|
T Consensus 273 DIVt--mgKpmGNGhPVa~Vattk------eIA~Af~atgv~YFNTyGGnP 315 (452)
T KOG1403|consen 273 DIVT--MGKPMGNGHPVAAVATTK------EIAQAFHATGVEYFNTYGGNP 315 (452)
T ss_pred chhe--ecccCCCCCeeeEEeccH------HHHHHhccccceehhccCCCc
Confidence 7775 44777 466678888887 56666544 3454454554
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.014 Score=55.81 Aligned_cols=197 Identities=17% Similarity=0.200 Sum_probs=110.3
Q ss_pred CCcHHHHHHHhhhhhcccC----CCC-CCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHH
Q 018300 113 FTSRAVMEAVGSCLTNKYS----EGL-PGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA 187 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~----~G~-pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~a 187 (358)
.+|..+...+...+ ++|+ +|. .|. .+++. ..+-+-..++.+.|+...++. ..+|=|.-++..+.+
T Consensus 78 LmPK~t~~~~~~eL-DkWak~av~gH~~Gk-----vPW~~-~De~il~l~~~iVGA~e~Eva---vmNsLTvNlh~Ll~s 147 (465)
T KOG3846|consen 78 LMPKSTRNSINAEL-DKWAKCAVEGHFKGK-----VPWVS-IDEPILPLLAPIVGAQENEVA---VMNSLTVNLHSLLIS 147 (465)
T ss_pred cCchhhHhHHHHHH-HHHHhhhhhcccccc-----cceee-cchhhhhhhhhhccCCchhhh---hHhhhhhHHHHHHHH
Confidence 45777777776554 3442 221 122 12221 112234457889999876431 134444445555567
Q ss_pred hccCCC---EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCC--CCCHHHHHHHhhhcCC--eEEEEcCC
Q 018300 188 ILKPHD---RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG--LVDYDMLEKTAILFRP--KLIIAGAS 260 (358)
Q Consensus 188 ll~pGD---~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~iD~d~le~~i~~~~~--klIi~~~s 260 (358)
+.+|-. +|+. +.++.++-.|... ..+.+.|+..+-...-+.|..| .+..+++-+.|+...- .+|.++..
T Consensus 148 FyKPTekR~KILl---E~kaFPSDhYAie-sQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~fSGv 223 (465)
T KOG3846|consen 148 FYKPTEKRFKILL---EKKAFPSDHYAIE-SQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGV 223 (465)
T ss_pred hcCCcchhhhhhh---ccCCCCchHHHHH-hhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcCCeEEEEEeecc
Confidence 777754 4553 3344444322111 1233445433322222333333 5777888777765432 34544433
Q ss_pred C--CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCC-C-CCcEEEEcCcCcC-ccCcE-EEEEEeC
Q 018300 261 A--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K-YCDVVTTTTHKSL-RGPRG-GMIFFKK 328 (358)
Q Consensus 261 ~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl-~-gaDiv~~S~hK~L-~Gp~G-G~I~~~~ 328 (358)
. +|+-.|+.+|...-+..|+++=.|-||++|-+ |.-+ + |+|+.+-...|++ .|+.| |.++..+
T Consensus 224 qyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNV-----pL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHe 292 (465)
T KOG3846|consen 224 QYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNV-----PLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVHE 292 (465)
T ss_pred eeecccccchhhhhhcccCCCcEechhhhhhhcCC-----ceEEeecCCceEEEeeecccccCCCccceeeeeh
Confidence 2 47789999999766777999999999998854 2112 2 8999999999998 45544 4445444
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.095 Score=50.38 Aligned_cols=142 Identities=18% Similarity=0.222 Sum_probs=86.4
Q ss_pred eEEeCCCHHHHHHHHHHh--ccCCCEEEecCCCCCcccccccccchhccccCC-ceEEEEeceecCCCCCCCHHHHHHHh
Q 018300 171 NVQPLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-IYFESMPYRLDESTGLVDYDMLEKTA 247 (358)
Q Consensus 171 ~V~~~SGt~A~~~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~iD~d~le~~i 247 (358)
.|+..|||.|+.....=+ +-+...|.+++|..+.|-.. .+..| ..+...+| .+.++..+|++.+...+
T Consensus 102 ~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~i--------f~~aGf~tv~~Y~y-Wd~~~k~~d~e~~Lsdl 172 (410)
T KOG1412|consen 102 GVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAI--------FEKAGFTTVATYPY-WDAENKCVDLEGFLSDL 172 (410)
T ss_pred ceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHH--------HHHcCCceeeeeee-ecCCCceecHHHHHHHH
Confidence 478899999888764322 33455688888877766321 12233 12233333 34456689999988877
Q ss_pred hhcCCe-EEEEc-CCCCCCCCC-----HHHHHHHHHHcCCEEEEeccccccccccCCccCC------CC-CCc-EEEEcC
Q 018300 248 ILFRPK-LIIAG-ASAYPRDFD-----YPRMRQIADAVGALLMMDMAHISGLVAASVVADP------FK-YCD-VVTTTT 312 (358)
Q Consensus 248 ~~~~~k-lIi~~-~s~~~~~~d-----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p------l~-gaD-iv~~S~ 312 (358)
+.-..+ ++++. ...+|+-.| +..|++..++.+...+.|.|+- |+..++.-... ++ |.. +++.|+
T Consensus 173 ~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQ-GfASGD~~~DawAiR~fV~~g~e~fv~QSF 251 (410)
T KOG1412|consen 173 ESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQ-GFASGDLDADAWAIRYFVEQGFELFVCQSF 251 (410)
T ss_pred hhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhc-ccccCCccccHHHHHHHHhcCCeEEEEhhh
Confidence 653334 34443 234555333 7788888889999999999854 65433211111 11 332 778899
Q ss_pred cCcC--ccCcEE
Q 018300 313 HKSL--RGPRGG 322 (358)
Q Consensus 313 hK~L--~Gp~GG 322 (358)
.|.| .++|-|
T Consensus 252 aKNfGlYneRvG 263 (410)
T KOG1412|consen 252 AKNFGLYNERVG 263 (410)
T ss_pred hhhccccccccc
Confidence 9996 678865
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.087 Score=55.02 Aligned_cols=150 Identities=14% Similarity=0.145 Sum_probs=85.2
Q ss_pred HHHHHHHcCCCCCCCcceE-EeCCCHHHHHHHHHHh-ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee
Q 018300 154 QKRALAAFNLDENKWGVNV-QPLSGSPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (358)
Q Consensus 154 ~~~la~lfg~~~~~~~v~V-~~~SGt~A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~ 231 (358)
+..++++.|++-+ |. +.--||.|-.++.++. ..++.++++....|.-.++.. .....+..+++
T Consensus 169 QTmi~dlTGL~~a----NASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~------~TRa~~~~i~v----- 233 (1001)
T KOG2040|consen 169 QTMITDLTGLPMA----NASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVV------KTRAKGFGIKV----- 233 (1001)
T ss_pred HHhhhhccCCccc----chhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhh------hccccccceeE-----
Confidence 4556788888753 22 2346887666665555 566777776554333222210 00111111111
Q ss_pred cCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEE
Q 018300 232 DESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVT 309 (358)
Q Consensus 232 ~~~~~~iD~d~le~~i~~~~~klIi~~~s~-~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~ 309 (358)
...|..+.....+ ...-|++.++. .|.+.|++++++.+++.|..+++-. .+.+--.+-.|-+ |+||++
T Consensus 234 ----~~~~~~~~~~s~~--~v~gvlvQYP~t~G~i~d~~el~~~a~~~~s~vv~at----DLLaLtiLrpPgefGaDIav 303 (1001)
T KOG2040|consen 234 ----VVSDIKEADYSSK--DVSGVLVQYPDTEGSVLDFDELVELAHANGSLVVMAT----DLLALTILRPPGEFGADIAV 303 (1001)
T ss_pred ----EecCHHHhhcccc--ceeEEEEEcCCCCCcccCHHHHHHHhhccCceEEEee----hhhHHHccCChhhcCceeee
Confidence 1233333322221 34456666665 5789999999999999998876632 2332212223445 999999
Q ss_pred EcCcCc-----CccCcEEEEEEeC
Q 018300 310 TTTHKS-----LRGPRGGMIFFKK 328 (358)
Q Consensus 310 ~S~hK~-----L~Gp~GG~I~~~~ 328 (358)
+|.+.. ++||..||..+++
T Consensus 304 GSsQRFGVPlGYGGPHAaFfAv~~ 327 (1001)
T KOG2040|consen 304 GSSQRFGVPLGYGGPHAAFFAVSE 327 (1001)
T ss_pred ccccccCccccCCCchHHHHHHHH
Confidence 999974 3677777776654
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.036 Score=54.04 Aligned_cols=71 Identities=24% Similarity=0.285 Sum_probs=45.9
Q ss_pred HHHHHHHhhhcC----C-eEEEEcC--C----CCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCc-c---CCCC-
Q 018300 240 YDMLEKTAILFR----P-KLIIAGA--S----AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A---DPFK- 303 (358)
Q Consensus 240 ~d~le~~i~~~~----~-klIi~~~--s----~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~---~pl~- 303 (358)
++++|++|..++ | ..|++++ + +.....-+.++.+|+++||+.+++|+.|.-| ...|.+ . -.++
T Consensus 255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGg-GaTGk~WaHehw~l~~ 333 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGG-GATGKFWAHEHWNLDS 333 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCC-CccCceeeehhcCCCC
Confidence 467777776543 2 3456653 2 2223344899999999999999999999844 334431 1 1233
Q ss_pred CCcEEEEc
Q 018300 304 YCDVVTTT 311 (358)
Q Consensus 304 gaDiv~~S 311 (358)
-.|+|+||
T Consensus 334 PpD~vTFS 341 (484)
T KOG1405|consen 334 PPDVVTFS 341 (484)
T ss_pred Cccceehh
Confidence 57899877
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.91 E-value=1.1 Score=42.70 Aligned_cols=201 Identities=17% Similarity=0.238 Sum_probs=105.7
Q ss_pred hcccccccCCCCcHHHHHHHhhhhhcccCCCCCC-CcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHH
Q 018300 103 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPG-KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 181 (358)
Q Consensus 103 ~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg-~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~ 181 (358)
.-+++-|++..+|..|+..+.+.+.|-..-|..- .-...+.++...++. +...++++++.... ..+...-.+||...
T Consensus 7 ~vvnFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~-tes~lreLlniPdn-~~vlf~QGGGt~qF 84 (370)
T KOG2790|consen 7 RVVNFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIIND-TESLLRELLNIPDN-YKVLFLQGGGTGQF 84 (370)
T ss_pred ceeecCCCcccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHH-HHHHHHHHHcCCCc-eeEEEEeCCCcccc
Confidence 4456778888899999999888887755434211 111223344444443 55667889999874 32333334677666
Q ss_pred HHHHHHhc--cCC---CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC--CCCCHHHHHHHhhhcCCeE
Q 018300 182 FEVYTAIL--KPH---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST--GLVDYDMLEKTAILFRPKL 254 (358)
Q Consensus 182 ~~a~~all--~pG---D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~iD~d~le~~i~~~~~kl 254 (358)
.++...|. +-| |-|++ |..+- .+.+.+...+- ...+..+..+.+ ..+|.+.++.. .+.+.
T Consensus 85 aAv~lNL~glK~g~~AdYiVT------GsWS~---KA~~EAkk~~~-~~~V~~~~k~y~ygkvPd~~~w~~~---~da~y 151 (370)
T KOG2790|consen 85 AAVPLNLIGLKHGRCADYVVT------GSWSA---KAAEEAKKYGT-PNIVIPKLKSYTYGKVPDPSTWELN---PDASY 151 (370)
T ss_pred cccchhhhccccCCccceEEe------ccccH---HHHHHHHhhCC-ceEEeccccccccCcCCChhhcccC---CCccE
Confidence 66666663 555 34443 21110 00011111121 112222222222 34566555432 13345
Q ss_pred EEE--cCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 255 IIA--GASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 255 Ii~--~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
++. +.+.-|..+|.-. .-.-.|+++++|++ +.+. ..|+| ..++++...+|.+ ||.| -+++.+++
T Consensus 152 vyyCaNETVHGVEf~~~P---~~~~~~~vlVaDmS--Snfl-----SrpvDvsk~gvi~aGAQKN~-G~aG~Tvvivr~d 220 (370)
T KOG2790|consen 152 VYYCANETVHGVEFDFIP---VNDPKGAVLVADMS--SNFL-----SRPVDVSKFGVIFAGAQKNV-GPAGVTVVIVRKD 220 (370)
T ss_pred EEEecCceeeceecCCCC---CCCCCCceEEEecc--cchh-----cCCccchhcceEEecccccc-CccccEEEEEehh
Confidence 543 2232343332111 22346999999996 2333 24555 6678889999985 6766 56666775
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=90.75 E-value=0.51 Score=46.14 Aligned_cols=157 Identities=15% Similarity=0.085 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHcCCC-CCCCcceEEeCCCH-HHHHHHHHHhccC---CC---EEEecCCCCCcccccccccchhccc
Q 018300 147 DELETLCQKRALAAFNLD-ENKWGVNVQPLSGS-PANFEVYTAILKP---HD---RIMGLDLPHGGHLSHGFMTPKRRVS 218 (358)
Q Consensus 147 ~~lE~~~~~~la~lfg~~-~~~~~v~V~~~SGt-~A~~~a~~all~p---GD---~Vl~~~~~~ggh~s~~~~~~~~~~~ 218 (358)
.+||+.+|+ +-++.|-- .++ -.|.+.+|+ +.+++++.+|... .+ .|+...|-|..+.. ++. -
T Consensus 46 ~eL~~~Ir~-LH~~VGNAvt~g--r~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~---qt~----~ 115 (363)
T PF04864_consen 46 PELERQIRR-LHRVVGNAVTDG--RYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPE---QTD----F 115 (363)
T ss_dssp HHHHHHHHH-HHHHH-SB--TT--SEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHH---HCC----C
T ss_pred HHHHHHHHH-HHHHhccccccC--cEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHH---HHH----h
Confidence 467776544 55566632 222 245666665 5888888887432 11 56766654443322 111 0
Q ss_pred cCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEE-EEcCCCCCCCCCHHHHHH-HHHHcCCEEEEeccccccccccC
Q 018300 219 GTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI-IAGASAYPRDFDYPRMRQ-IADAVGALLMMDMAHISGLVAAS 296 (358)
Q Consensus 219 ~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klI-i~~~s~~~~~~dl~~I~~-ia~e~g~~livD~Ah~~Gl~~~g 296 (358)
+.+..+++.- |..... + .......| ++..||||-- .|.+ +.+.-+..+|.|-|++--..
T Consensus 116 f~s~~y~w~G---da~~~~-~--------~~~~~~~IElVTSPNNPDG----~lr~~V~~g~~~k~I~D~AYYWPhy--- 176 (363)
T PF04864_consen 116 FDSRLYKWAG---DASNFK-N--------SDNPSPYIELVTSPNNPDG----QLREAVLNGSSGKVIHDLAYYWPHY--- 176 (363)
T ss_dssp T-BTTEEEEE---ECCCGT-T---------S-CCGEEEEEESS-TTT----------SSTTTEEEEEEE-TT-STTT---
T ss_pred ccccCccccc---cHHhhc-c--------CCCCCCeEEEEeCCCCCcc----cccchhcCCCCcceeeeeeeecccc---
Confidence 1122233221 111110 0 00122344 4456777631 1222 33555778899998663221
Q ss_pred CccCCCC---CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHh
Q 018300 297 VVADPFK---YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 297 ~~~~pl~---gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~ 341 (358)
.|+. .-|++.||++|. .|.- -|+.+.+++ ++.+++.
T Consensus 177 ---TpI~~~aD~DiMLFT~SK~-TGHAGSR~GWAlVKD~-----~Va~kM~ 218 (363)
T PF04864_consen 177 ---TPITAPADHDIMLFTLSKL-TGHAGSRFGWALVKDE-----EVAKKMT 218 (363)
T ss_dssp ---S---S-B--SEEEEEHHHH-CS-GGG-EEEEEES-H-----HHHHHHH
T ss_pred ---cccCCCCCCceEEEEEecc-cCccccccceeeecCH-----HHHHHHH
Confidence 3333 458999999994 5554 499999987 6666654
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.28 E-value=0.56 Score=44.28 Aligned_cols=104 Identities=21% Similarity=0.286 Sum_probs=67.9
Q ss_pred CCCHHHHHHHhhhcCCeEEEEcCC--C-C-CCCC-CHHHHHHHHHHcCCEEEEeccccccccccCCc---c--CCCCCCc
Q 018300 237 LVDYDMLEKTAILFRPKLIIAGAS--A-Y-PRDF-DYPRMRQIADAVGALLMMDMAHISGLVAASVV---A--DPFKYCD 306 (358)
Q Consensus 237 ~iD~d~le~~i~~~~~klIi~~~s--~-~-~~~~-dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~---~--~pl~gaD 306 (358)
.-|++.+++.+++..+..|++-++ + + |+.. .+++|..||..|+++-++.+|+. +-..... . .....+|
T Consensus 140 ~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayg--lqsee~i~~iaa~~~~grid 217 (432)
T KOG3843|consen 140 ITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYG--LQSEECIHKIAAAAECGRID 217 (432)
T ss_pred HHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccc--cchHHHHHHHHHHhhhccHH
Confidence 568899999888767775544322 2 2 4544 49999999999999999999854 2211100 0 0111468
Q ss_pred EEEEcCcCcCccCcEEEEEEe-CCCCchhHHHHHHhhccCCcc
Q 018300 307 VVTTTTHKSLRGPRGGMIFFK-KDPVLGVELESAINNAVFPGL 348 (358)
Q Consensus 307 iv~~S~hK~L~Gp~GG~I~~~-~~~~~~~~~~~~i~~~~f~g~ 348 (358)
.++.|+.|.|.-|-||.|+.. ++ .+.+.|... +||-
T Consensus 218 a~vqsldknf~vpvggaiia~fk~-----n~iq~iak~-ypgr 254 (432)
T KOG3843|consen 218 AFVQSLDKNFMVPVGGAIIAAFKD-----NFIQEIAKM-YPGR 254 (432)
T ss_pred HHHHHhhhcceeecchhHhhHhHH-----HHHHHHHHh-CCCc
Confidence 999999999999988876642 22 444555443 4543
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=82.59 E-value=2.8 Score=37.71 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=47.8
Q ss_pred CCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCc
Q 018300 237 LVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKS 315 (358)
Q Consensus 237 ~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~ 315 (358)
.+.+++++++++. ...+|.++.+.-++...++++.+-.|+.+.++|.|++-.-... ...+ |+|++.++++-+
T Consensus 51 TPT~~ev~~l~~a-GadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~------~A~~~G~D~I~TTLsGY 123 (192)
T PF04131_consen 51 TPTLKEVDALAEA-GADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAI------NAAELGFDIIGTTLSGY 123 (192)
T ss_dssp S-SHHHHHHHHHC-T-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHH------HHHHTT-SEEE-TTTTS
T ss_pred CCCHHHHHHHHHc-CCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHH------HHHHcCCCEEEcccccC
Confidence 4567899988764 6889999988877778899999989998899999997332111 1112 899999886654
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 358 | ||||
| 3ou5_A | 490 | Human Mitochondrial Serine Hydroxymethyltransferase | 1e-104 | ||
| 1bj4_A | 470 | Recombinant Serine Hydroxymethyltransferase (human) | 1e-100 | ||
| 1ls3_B | 483 | Crystal Structure Of The Complex Between Rabbit Cyt | 5e-99 | ||
| 1cj0_A | 470 | Crystal Structure Of Rabbit Cytosolic Serine Hydrox | 6e-99 | ||
| 1rvu_A | 483 | E75q Mutant Of Rabbit Cytosolic Serine Hydroxymethy | 1e-98 | ||
| 1rv3_A | 483 | E75l Mutant Of Rabbit Cytosolic Serine Hydroxymethy | 5e-98 | ||
| 1eji_A | 478 | Recombinant Serine Hydroxymethyltransferase (Mouse) | 3e-94 | ||
| 2vmn_A | 405 | Crystal Structure Of N341absshmt Internal Aldimine | 5e-71 | ||
| 2vmv_A | 405 | Crystal Structure Of F351gbsshmt Internal Aldimine | 5e-71 | ||
| 1kkj_A | 419 | Crystal Structure Of Serine Hydroxymethyltransferas | 5e-71 | ||
| 2vi8_A | 405 | Crystal Structure Of S172absshmt Internal Aldimine | 1e-70 | ||
| 2vgs_A | 407 | Crystal Structure Of E53qbsshmt Internal Aldimine L | 1e-70 | ||
| 1yjs_A | 419 | K226q Mutant Of Serine Hydroxymethyltransferase Fro | 1e-70 | ||
| 2w7d_A | 405 | Crystal Structure Of Y51fbsshmt Internal Aldimine L | 1e-70 | ||
| 1yjy_A | 419 | K226m Mutant Of Serine Hydroxymethyltransferase Fro | 3e-70 | ||
| 2w7i_A | 405 | Crystal Structure Of Y61absshmt Internal Aldimine L | 5e-70 | ||
| 2vmr_A | 405 | Crystal Structure Of Y60absshmt Internal Aldimine L | 5e-70 | ||
| 3ecd_A | 425 | Crystal Structure Of Serine Hydroxymethyltransferas | 1e-68 | ||
| 3pgy_A | 415 | Serine Hydroxymethyltransferase From Staphylococcus | 3e-67 | ||
| 3h7f_A | 447 | Crystal Structure Of Serine Hydroxymethyltransferas | 4e-67 | ||
| 2dkj_A | 407 | Crystal Structure Of T.Th.Hb8 Serine Hydroxymethylt | 8e-67 | ||
| 3n0l_A | 417 | Crystal Structure Of Serine Hydroxymethyltransferas | 2e-65 | ||
| 1dfo_A | 417 | Crystal Structure At 2.4 Angstrom Resolution Of E. | 3e-61 | ||
| 1eqb_A | 417 | X-Ray Crystal Structure At 2.7 Angstroms Resolution | 1e-60 | ||
| 3g8m_A | 417 | Serine Hydroxymethyltransferase Y55f Mutant Length | 1e-60 | ||
| 3gbx_A | 420 | Serine Hydroxymethyltransferase From Salmonella Typ | 9e-57 |
| >pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2 Length = 490 | Back alignment and structure |
|
| >pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human) Length = 470 | Back alignment and structure |
|
| >pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic Serine Hydroxymethyltransferase And Triglu-5-Formyl-Tetrahydrofolate Length = 483 | Back alignment and structure |
|
| >pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine Hydroxymethyltransferase At 2.8 Angstrom Resolution Length = 470 | Back alignment and structure |
|
| >pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine Hydroxymethyltransferase Length = 483 | Back alignment and structure |
|
| >pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine Hydroxymethyltransferase, Complex With Glycine Length = 483 | Back alignment and structure |
|
| >pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse) Length = 478 | Back alignment and structure |
|
| >pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From B.Stearothermophilus Length = 419 | Back alignment and structure |
|
| >pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine Length = 407 | Back alignment and structure |
|
| >pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B. Stearothermophilus, Complex With Glycine Length = 419 | Back alignment and structure |
|
| >pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B. Stearothermophilus, Complex With Serine Length = 419 | Back alignment and structure |
|
| >pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Burkholderia Pseudomallei Length = 425 | Back alignment and structure |
|
| >pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus Aureus, S95p Mutant. Length = 415 | Back alignment and structure |
|
| >pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Mycobacterium Tuberculosis Length = 447 | Back alignment and structure |
|
| >pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine Hydroxymethyltransferase Length = 407 | Back alignment and structure |
|
| >pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Campylobacter Jejuni Length = 417 | Back alignment and structure |
|
| >pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli Serine Hydroxymethyltransferase In Complex With Glycine And 5-Formyl Tetrahydrofolate Length = 417 | Back alignment and structure |
|
| >pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of Ternary Complex Between The Y65f Mutant Of E-Coli Serine Hydroxymethyltransferase, Glycine And 5-Formyl Tetrahydrofolate Length = 417 | Back alignment and structure |
|
| >pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant Length = 417 | Back alignment and structure |
|
| >pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella Typhimurium Length = 420 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* Length = 483 | Back alignment and structure |
|---|
Score = 548 bits (1413), Expect = 0.0
Identities = 180/285 (63%), Positives = 213/285 (74%), Gaps = 9/285 (3%)
Query: 76 SSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLP 135
+ L ++D EV +II KE RQ LELIASENF SRAV+EA+GSCL NKYS G P
Sbjct: 18 EQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYP 77
Query: 136 GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRI 195
G+RYYGG E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RI
Sbjct: 78 GQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRI 137
Query: 196 MGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 255
MGLDLP GGHL+HGFMT K+++S TSI+FESM Y+++ TG +DYD LE+ A LF PKLI
Sbjct: 138 MGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLI 197
Query: 256 IAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKS 315
IAG S Y R+ DY R+R+IAD GA LM DMAHISGLV A VV PF++C VVTTTTHK+
Sbjct: 198 IAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKT 257
Query: 316 LRGPRGGMIFFKKDP---------VLGVELESAINNAVFPGLQVG 351
LRG R GMIF+++ + LES IN+AVFPGLQ G
Sbjct: 258 LRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGG 302
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} SCOP: c.67.1.4 PDB: 3ou5_A Length = 490 | Back alignment and structure |
|---|
Score = 545 bits (1406), Expect = 0.0
Identities = 177/302 (58%), Positives = 218/302 (72%), Gaps = 9/302 (2%)
Query: 59 RPPSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAV 118
R S + + SL ++DPE+ E++ +EK+RQ + LELIASENF SRA
Sbjct: 11 RAQHSNAAQTQTGEANRGWTGQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAA 70
Query: 119 MEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 178
+EA+GSCL NKYSEG PGKRYYGG E +DE+E LCQ+RAL AF+LD +WGVNVQP SGS
Sbjct: 71 LEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGS 130
Query: 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 238
PAN VYTA+L+PHDRIMGLDLP GGHL+HG+M+ +R+S TSI+FESMPY+L+ TGL+
Sbjct: 131 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLI 190
Query: 239 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 298
DY+ L TA LFRP+LIIAG SAY R DY RMR++ D V A L+ DMAHISGLVAA V+
Sbjct: 191 DYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVI 250
Query: 299 ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDP---------VLGVELESAINNAVFPGLQ 349
PFK+ D+VTTTTHK+LRG R G+IF++K + E IN AVFP LQ
Sbjct: 251 PSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQ 310
Query: 350 VG 351
G
Sbjct: 311 GG 312
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... Length = 405 | Back alignment and structure |
|---|
Score = 395 bits (1017), Expect = e-137
Identities = 133/270 (49%), Positives = 180/270 (66%), Gaps = 15/270 (5%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYG
Sbjct: 3 YLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYG 62
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L
Sbjct: 63 GCEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLS 118
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
HGGHL+HG V+ + + + + Y +D T ++DYD + + A L RPKLI+A A+A
Sbjct: 119 HGGHLTHGS-----PVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAAA 173
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
YPR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRG
Sbjct: 174 YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG 233
Query: 322 GMIFFKKDPVLGVELESAINNAVFPGLQVG 351
GMI ++ + I+ A+FPG+Q G
Sbjct: 234 GMILCQE------QFAKQIDKAIFPGIQGG 257
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} Length = 407 | Back alignment and structure |
|---|
Score = 393 bits (1011), Expect = e-136
Identities = 132/270 (48%), Positives = 175/270 (64%), Gaps = 14/270 (5%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
S + D + E+I E++RQ + LELIASENF S+ V EAVGS LTNKY+EG PG RYYG
Sbjct: 3 STLKRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYG 62
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G E ID +E+L +RA A F NVQP SGS AN VY A+++P D +MG+DL
Sbjct: 63 GCEVIDRVESLAIERAKALFGAAW----ANVQPHSGSQANMAVYMALMEPGDTLMGMDLA 118
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
GGHL+HG + SG ++ + Y + T L+D + + + A+ RPK+I+AGASA
Sbjct: 119 AGGHLTHGS---RVNFSG--KLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASA 173
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
YPR +D+ R+IAD VGA L++DMAH +GLVAA + +P Y VVT+TTHK+LRGPRG
Sbjct: 174 YPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG 233
Query: 322 GMIFFKKDPVLGVELESAINNAVFPGLQVG 351
G+I EL I+ +FPG+Q G
Sbjct: 234 GLILSNDP-----ELGKRIDKLIFPGIQGG 258
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 3g8m_A* 1eqb_A* Length = 420 | Back alignment and structure |
|---|
Score = 393 bits (1011), Expect = e-136
Identities = 133/272 (48%), Positives = 178/272 (65%), Gaps = 13/272 (4%)
Query: 80 DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRY 139
+ ++ + D E+ + + +EK RQ + +ELIASEN+TS VM+A GS LTNKY+EG PGKRY
Sbjct: 8 EMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRY 67
Query: 140 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD 199
YGG EY+D +E L RA F D NVQP SGS ANF VYTA+L+P D ++G++
Sbjct: 68 YGGCEYVDVVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTVLGMN 123
Query: 200 LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259
L GGHL+HG SG + +PY +DE +G +DYD + K A +PK+II G
Sbjct: 124 LAQGGHLTHG---SPVNFSG--KLYNIVPYGIDE-SGKIDYDEMAKLAKEHKPKMIIGGF 177
Query: 260 SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP 319
SAY D+ +MR+IAD++GA L +DMAH++GL+AA V +P + VVTTTTHK+L GP
Sbjct: 178 SAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGP 237
Query: 320 RGGMIFFKKDPVLGVELESAINNAVFPGLQVG 351
RGG+I K EL +N+AVFP Q G
Sbjct: 238 RGGLILAKGG---DEELYKKLNSAVFPSAQGG 266
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} Length = 447 | Back alignment and structure |
|---|
Score = 393 bits (1013), Expect = e-136
Identities = 135/278 (48%), Positives = 180/278 (64%), Gaps = 15/278 (5%)
Query: 74 DGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEG 133
G + L E DP++ E++ KE RQ +LE+IASENF RAV++A GS LTNKY+EG
Sbjct: 17 QGPGSMSAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEG 76
Query: 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD 193
LPG+RYYGG E++D +E L + RA A F + NVQP SG+ AN V A++ P +
Sbjct: 77 LPGRRYYGGCEHVDVVENLARDRAKALFGAEF----ANVQPHSGAQANAAVLHALMSPGE 132
Query: 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK 253
R++GLDL +GGHL+HG + SG +E+ Y +D +T L+D D + TA+ FRPK
Sbjct: 133 RLLGLDLANGGHLTHGM---RLNFSGK--LYENGFYGVDPATHLIDMDAVRATALEFRPK 187
Query: 254 LIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH 313
+IIAG SAYPR D+ R IAD VGA L++DMAH +GLVAA + P + DVV+TT H
Sbjct: 188 VIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVH 247
Query: 314 KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQVG 351
K+L G R G+I K+ + AIN+AVFPG Q G
Sbjct: 248 KTLGGGRSGLIVGKQ------QYAKAINSAVFPGQQGG 279
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} Length = 425 | Back alignment and structure |
|---|
Score = 392 bits (1010), Expect = e-136
Identities = 139/278 (50%), Positives = 177/278 (63%), Gaps = 14/278 (5%)
Query: 74 DGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEG 133
+ + F SL E D V I KE ERQ +ELIASEN SRAV++A GS LTNKY+EG
Sbjct: 4 NANPFFSQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEG 63
Query: 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD 193
PGKRYYGG E+ DE+E L +R FN NVQP SG+ AN V A+ KP D
Sbjct: 64 YPGKRYYGGCEFADEVEALAIERVKRLFNAGH----ANVQPHSGAQANGAVMLALAKPGD 119
Query: 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK 253
++G+ L GGHL+HG K +SG +F ++ Y + T L+DYD +E A +P
Sbjct: 120 TVLGMSLDAGGHLTHGA---KPALSG--KWFNALQYGVSRDTMLIDYDQVEALAQQHKPS 174
Query: 254 LIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH 313
LIIAG SAYPR D+ R R IAD+VGA LM+DMAHI+G++AA A+P ++ VVT+TTH
Sbjct: 175 LIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTH 234
Query: 314 KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQVG 351
K+LRGPRGG + + E+ IN+AVFPGLQ G
Sbjct: 235 KTLRGPRGGFVLTNDE-----EIAKKINSAVFPGLQGG 267
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} Length = 417 | Back alignment and structure |
|---|
Score = 390 bits (1005), Expect = e-135
Identities = 135/270 (50%), Positives = 175/270 (64%), Gaps = 15/270 (5%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
SL D E+ ++ KE ERQ + LE+IASENFT VME +GS LTNKY+EG PGKRYYG
Sbjct: 5 SLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYG 64
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G E++DE+ETL +R FN NVQP SGS AN VY A++ P D+I+G+DL
Sbjct: 65 GCEFVDEIETLAIERCKKLFNCKF----ANVQPNSGSQANQGVYAALINPGDKILGMDLS 120
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
HGGHL+HG K SG +ES Y ++ G +DY+ + + A +PKLI+ GASA
Sbjct: 121 HGGHLTHG---AKVSSSG--KMYESCFYGVEL-DGRIDYEKVREIAKKEKPKLIVCGASA 174
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y R D+ + R+IAD +GA L D+AHI+GLV A PF Y VV++TTHK+LRGPRG
Sbjct: 175 YARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRG 234
Query: 322 GMIFFKKDPVLGVELESAINNAVFPGLQVG 351
G+I + EL IN+A+FPG+Q G
Sbjct: 235 GIIMTNDE-----ELAKKINSAIFPGIQGG 259
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 1e-09
Identities = 36/259 (13%), Positives = 70/259 (27%), Gaps = 42/259 (16%)
Query: 98 KERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157
+E + + L + + + + +++ + G Y G+E LE R
Sbjct: 29 QEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMMGDEAYAGSENFYHLE-----RT 83
Query: 158 LAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMG---LDLPHGGHLSHGFMTPK 214
+ ++ + G A + +KP + G +G
Sbjct: 84 VQELFGFKHIVPTH----QGRGAENLLSQLAIKPGQYVAGNMYFTTTRYHQEKNGA---- 135
Query: 215 RRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI----------IAGASAYPR 264
G +D L+K + I +AG
Sbjct: 136 -VFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSM 194
Query: 265 DFDYPRMRQIADAVGALLMMDMAHISG--------------LVAASVVADPFKYCDVVTT 310
+ +R++ +A G + D A +V + F Y D T
Sbjct: 195 A-NMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTM 253
Query: 311 TTHKSLRGPRGGMIFFKKD 329
+ K GG + D
Sbjct: 254 SGKKDCLVNIGGFLCMNDD 272
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 4e-06
Identities = 38/276 (13%), Positives = 81/276 (29%), Gaps = 77/276 (27%)
Query: 80 DYSLGEADPEVCEIITKEKERQFKSLELIAS-ENFTSRAVMEAVGSCLTNKYSEGLPGKR 138
D E + I K+ +L L + + V + V L Y
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-------- 91
Query: 139 YYGGNEYI-DELETLCQKRAL--AAFNLDENKWGVNVQPLSGSPAN---FEVYTAI---- 188
+++ ++T ++ ++ + ++ + Q + N + Y +
Sbjct: 92 -----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA--KYNVSRLQPYLKLRQAL 144
Query: 189 --LKPHDRI----MG------------LDLPHGGHLSHG-F-MTPKRRVSGTSI--YFES 226
L+P + + L + F + K S ++ +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 227 MPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPRDF----DYPRMRQIADAVGAL 281
+ Y++D + T D+ KL I A R Y L
Sbjct: 205 LLYQIDPNWTSRSDHS--------SNIKLRIHSIQAELRRLLKSKPYEN---------CL 247
Query: 282 LMMDMAHISGLVAASVVADPFKY-CDVVTTTTHKSL 316
L++ + V + + F C ++ TT K +
Sbjct: 248 LVLL--N----VQNAKAWNAFNLSCKILLTTRFKQV 277
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 2e-05
Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 31/187 (16%)
Query: 176 SGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKR-RVSGTSIYFESMPYRLDES 234
G A ++ +LK + P H T ++G D
Sbjct: 99 QGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSE 158
Query: 235 T-----GLVDYDMLEKTAILFRPKLIIA---------GASAYPRDFDYPR-MRQIADAVG 279
T G D L++ I I A P + + +IA G
Sbjct: 159 TYDDWKGDFDIKKLKE-NIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 217
Query: 280 ALLMMDMAHI--------------SGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIF 325
++MD A V+ D +KY D +T + K GG++
Sbjct: 218 IFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVA 277
Query: 326 FKKDPVL 332
+ + +
Sbjct: 278 IRDNEEI 284
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 358 | |||
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 100.0 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 100.0 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 100.0 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 100.0 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 100.0 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 100.0 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 100.0 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.97 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.96 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.91 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.89 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.86 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.84 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.84 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.82 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.82 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.82 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.81 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.81 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.81 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.81 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.81 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.8 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.8 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.8 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.8 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.8 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.8 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.8 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.8 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.79 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.79 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.79 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.79 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.79 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.78 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.78 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.78 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.78 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.78 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.78 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.78 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.78 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.77 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.77 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.77 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.77 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.77 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.77 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.77 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.77 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.77 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.77 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.77 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.77 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.76 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.76 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.76 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.76 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.76 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.76 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.76 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.76 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.75 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.75 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.75 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.75 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.75 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.75 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.75 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.74 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.74 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.74 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.74 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.74 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.74 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.74 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.74 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.73 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.73 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.73 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.73 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.73 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.73 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.73 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.73 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.73 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.73 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.73 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.73 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.73 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.73 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.72 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.72 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.72 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.72 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.72 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.72 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.72 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.71 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.71 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.71 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.71 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.71 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.7 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.7 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.7 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.7 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.7 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.7 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.7 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.7 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.7 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.7 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.7 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.69 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.69 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.69 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.69 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.69 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.69 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.69 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.69 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.69 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.68 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.68 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.68 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.68 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.68 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.68 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.68 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.68 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.68 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.67 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.67 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.67 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.66 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.66 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.66 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.65 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.65 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.65 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.64 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.64 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.64 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.64 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.64 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.64 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.64 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.64 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.64 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.63 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.63 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.63 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.62 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.62 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.61 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.61 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.6 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.6 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.6 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.58 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.58 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.57 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.57 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.57 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.57 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.56 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.56 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.55 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.55 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.54 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.54 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.54 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.54 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.53 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.28 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.52 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.52 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.52 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.51 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.5 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.5 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.5 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.5 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.49 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.49 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.49 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.49 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.48 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.48 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.48 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.48 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.48 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.47 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.46 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.46 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.46 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.46 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.45 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.42 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.41 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.41 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.41 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.41 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.4 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.39 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.38 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.37 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.36 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.36 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.36 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.35 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.34 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.34 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.33 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.31 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.29 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.29 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.28 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.28 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.27 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.24 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.2 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.2 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.19 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.18 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.18 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.03 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 98.52 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 98.97 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 98.94 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 98.84 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 98.39 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 98.0 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 97.86 |
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-71 Score=550.31 Aligned_cols=281 Identities=62% Similarity=1.025 Sum_probs=231.8
Q ss_pred chhcccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHH
Q 018300 77 SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKR 156 (358)
Q Consensus 77 ~~~~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~ 156 (358)
+...+.|++.||+++++|++|+.||+++|+||||||++|+.|+++++++|+|+|+|||||+|||+|++++|++|.+|++|
T Consensus 29 ~~~~~~l~~~Dpei~~~i~~E~~RQ~~~ieLIASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~r 108 (490)
T 3ou5_A 29 WTGQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRR 108 (490)
T ss_dssp CSSCCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHH
T ss_pred cccccchhhhCHHHHHHHHHHHHHHHcCceEecCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHH
Confidence 33467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCC
Q 018300 157 ALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 236 (358)
Q Consensus 157 la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 236 (358)
++++||+++++|+|||++.||+.||++++.++++|||+||.+++.+|||++|++.+....+.++|.+|+.++|++|++++
T Consensus 109 ak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~ 188 (490)
T 3ou5_A 109 ALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTG 188 (490)
T ss_dssp HHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC----------------------------CBCEETTTT
T ss_pred HHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999866555678889999999999999999
Q ss_pred CCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcC
Q 018300 237 LVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL 316 (358)
Q Consensus 237 ~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L 316 (358)
.||||++++++.+++||+|+++.|.|++.+|++++++||+++|++|++|+||.+||+++|.+|+|+++||++++||||+|
T Consensus 189 ~IDyd~~~~~A~~~kPklIi~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~ADvVTtTTHKTL 268 (490)
T 3ou5_A 189 LIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTL 268 (490)
T ss_dssp EECHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSSTT
T ss_pred cccHHHHHHHHhhcCCCeEEECCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccccceEEeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcEEEEEEeCCCC---------chhHHHHHHhhccCCccccccccccc
Q 018300 317 RGPRGGMIFFKKDPV---------LGVELESAINNAVFPGLQVGFVSYVF 357 (358)
Q Consensus 317 ~Gp~GG~I~~~~~~~---------~~~~~~~~i~~~~f~g~q~~~~~~~~ 357 (358)
+|||||+|+++++.. ..+++.++|++++|||+|||||+|+|
T Consensus 269 rGPrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~I 318 (490)
T 3ou5_A 269 RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAI 318 (490)
T ss_dssp CSCSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHH
T ss_pred cCCCceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHH
Confidence 999999999998521 12368899999999999999999986
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-50 Score=407.16 Aligned_cols=278 Identities=63% Similarity=1.046 Sum_probs=215.8
Q ss_pred cccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHH
Q 018300 80 DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALA 159 (358)
Q Consensus 80 ~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~ 159 (358)
.++|+++||++|++|++|+.||++.|+||+|||++|+.|++|+.+.+.++|++|||++|||+|+++++++|+++++++++
T Consensus 32 ~~~l~~~d~~~~~~~~~e~~rq~~~i~lias~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~ 111 (490)
T 2a7v_A 32 QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALE 111 (490)
T ss_dssp CCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHH
T ss_pred cchhhhcCHHHHHHHHHHHHHHHcCceEECCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCC
Q 018300 160 AFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD 239 (358)
Q Consensus 160 lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD 239 (358)
+||+++++|+++|+++|||.||.+++.++++|||+|+++++.|+||++|+++...+.+.+.|..++.++++++++++.+|
T Consensus 112 l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD 191 (490)
T 2a7v_A 112 AFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLID 191 (490)
T ss_dssp HTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBC
T ss_pred HcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcC
Confidence 99999877766788889999999999999999999999999999999987644333445667767778888887788999
Q ss_pred HHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccC
Q 018300 240 YDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP 319 (358)
Q Consensus 240 ~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp 319 (358)
+++|++.+..++||+|+++.++||+..|+++|+++|+++|++|++|++|++|+++.|..+.+++++|++++|+||+|+||
T Consensus 192 ~d~le~~l~~~~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~~aDiv~~S~hK~l~Gp 271 (490)
T 2a7v_A 192 YNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA 271 (490)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSC
T ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCCCCCEEEECCcccCccc
Confidence 99999998766899999998999999999999999999999999999999999888877777789999999999999999
Q ss_pred cEEEEEEeCCCC---------chhHHHHHHhhccCCccccccccccc
Q 018300 320 RGGMIFFKKDPV---------LGVELESAINNAVFPGLQVGFVSYVF 357 (358)
Q Consensus 320 ~GG~I~~~~~~~---------~~~~~~~~i~~~~f~g~q~~~~~~~~ 357 (358)
+||+|+++++.+ .++++.++++..+|++.|++|+.|.+
T Consensus 272 ~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~i 318 (490)
T 2a7v_A 272 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAI 318 (490)
T ss_dssp SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHH
T ss_pred cchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHH
Confidence 999999998521 01257889999999999999998864
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=364.59 Aligned_cols=282 Identities=64% Similarity=1.022 Sum_probs=246.1
Q ss_pred cchhcccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHH
Q 018300 76 SSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK 155 (358)
Q Consensus 76 ~~~~~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~ 155 (358)
+.+++++++++||++++++++|..+|++.|+|++++|++|+.|++++.+.+.++|++|||+++||+|++.++++|+.+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~ 97 (483)
T 1rv3_A 18 EQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQK 97 (483)
T ss_dssp HHHTTSCHHHHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHH
T ss_pred HHHHhhhhhhcCHHHHHHHHHHHHHhhcCeEEEcCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC
Q 018300 156 RALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST 235 (358)
Q Consensus 156 ~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 235 (358)
+++++||+++++|.++|+++||+.||.+++.++++|||+|+++++.|++|++|++......+.+.|..++.+++++++++
T Consensus 98 ~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~ 177 (483)
T 1rv3_A 98 RALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDT 177 (483)
T ss_dssp HHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTT
T ss_pred HHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCC
Confidence 99999999976665678999999999999999999999999999999999988764322234455655678888888778
Q ss_pred CCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCc
Q 018300 236 GLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKS 315 (358)
Q Consensus 236 ~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~ 315 (358)
+.+|+++|++.+...+||+|+++.++++...|+++|+++|+++|++|++|++|+.|++..+..+.|++++|++++|+||+
T Consensus 178 ~~iD~d~le~~i~~~~tklIi~~~sn~~~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~ 257 (483)
T 1rv3_A 178 GYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKT 257 (483)
T ss_dssp CSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGG
T ss_pred CcCCHHHHHHHHhhcCCcEEEEeCCcCCCcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCccc
Confidence 89999999999975689999887777788899999999999999999999999999988777667777899999999999
Q ss_pred CccCcEEEEEEeCCCCc---------hhHHHHHHhhccCCccccccccccc
Q 018300 316 LRGPRGGMIFFKKDPVL---------GVELESAINNAVFPGLQVGFVSYVF 357 (358)
Q Consensus 316 L~Gp~GG~I~~~~~~~~---------~~~~~~~i~~~~f~g~q~~~~~~~~ 357 (358)
|+||+||+|+++++.+. .+++.++++...|++.|++|+.|.+
T Consensus 258 l~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~i 308 (483)
T 1rv3_A 258 LRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAI 308 (483)
T ss_dssp GCCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHH
T ss_pred CCCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHH
Confidence 99999999999985220 0136678888889999999988753
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=300.97 Aligned_cols=262 Identities=51% Similarity=0.799 Sum_probs=227.5
Q ss_pred hcccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHH
Q 018300 79 VDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (358)
Q Consensus 79 ~~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la 158 (358)
..++++.++|++++.+.+|..++.+.++|++++|+++|.|++++.+.+.++|.+|||+.+|+.|++..+.+|+.++++++
T Consensus 22 ~~~~l~~~~~~i~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la 101 (447)
T 3h7f_A 22 MSAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAK 101 (447)
T ss_dssp GGCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHhCCHHHHHHHHHHHHHHhCceeEecCCCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999888999999999999999999999988879999
Q ss_pred HHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCC
Q 018300 159 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 238 (358)
Q Consensus 159 ~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 238 (358)
+++|++. ++++++||+.|+..++.++++|||+|+++++.|++|+.++. .+...|..+..++++++++++.+
T Consensus 102 ~~~g~~~----~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~ 172 (447)
T 3h7f_A 102 ALFGAEF----ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGM-----RLNFSGKLYENGFYGVDPATHLI 172 (447)
T ss_dssp HHHTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-----TTSHHHHSSEEEEECCCTTTCSC
T ss_pred HHcCCCc----eEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhh-----hhhhcCCeeEEEEcCcCcccCCc
Confidence 9999986 45668899999999999999999999999998888776653 22334444566777777667889
Q ss_pred CHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCcc
Q 018300 239 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG 318 (358)
Q Consensus 239 D~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~G 318 (358)
|++++++.+...++++|+++.++++...|+++|+++|+++|++|++|++|+.|+...+..+.+++++|++++|+||+|+|
T Consensus 173 d~~~l~~~i~~~~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~~di~~~s~sK~l~G 252 (447)
T 3h7f_A 173 DMDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGG 252 (447)
T ss_dssp CHHHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSGGGCC
T ss_pred CHHHHHHHHHhcCCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCCCCcEEEecCCcCCCC
Confidence 99999999876689999998788888889999999999999999999999999877776666667899999999999999
Q ss_pred CcEEEEEEeCCCCchhHHHHHHhhccCCccccccccc
Q 018300 319 PRGGMIFFKKDPVLGVELESAINNAVFPGLQVGFVSY 355 (358)
Q Consensus 319 p~GG~I~~~~~~~~~~~~~~~i~~~~f~g~q~~~~~~ 355 (358)
|+||++++++ ++.++++...+++.+++|..+
T Consensus 253 ~~gG~i~~~~------~~~~~l~~~~~~~~~~~~~~~ 283 (447)
T 3h7f_A 253 GRSGLIVGKQ------QYAKAINSAVFPGQQGGPLMH 283 (447)
T ss_dssp CSCEEEEECG------GGHHHHHHHHTTTTCSSCCHH
T ss_pred CCeEEEEECH------HHHHHHhhhcCCcccCCccHH
Confidence 9999999987 567778887788888887654
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=282.07 Aligned_cols=260 Identities=52% Similarity=0.841 Sum_probs=215.3
Q ss_pred ccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~l 160 (358)
.+++.+||++++.+.+|..++.+.+.|++++|++++.|++++.+.+.+.|..||++.++|.+....+++|+.++++++++
T Consensus 4 ~~~~~~~~~i~~~~~~e~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 83 (417)
T 3n0l_A 4 MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKL 83 (417)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHHHhcCeeeecccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHH
Confidence 46789999999999999998889999999999999999999999888888889999899999999999999899999999
Q ss_pred cCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCH
Q 018300 161 FNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240 (358)
Q Consensus 161 fg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~ 240 (358)
+|++++ +|+++|||+|+..++.++++|||+|++.++.|+++..++. .+...|..++.++++++ +++.+|+
T Consensus 84 ~g~~~~----~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~-~~~~~d~ 153 (417)
T 3n0l_A 84 FNCKFA----NVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGA-----KVSSSGKMYESCFYGVE-LDGRIDY 153 (417)
T ss_dssp HTCSEE----ECCCSSHHHHHHHHHHHHSCTTCEEEEECC---------------------CCSEEEEECCC-TTSSCCH
T ss_pred hCCCCc----ceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhh-----hhhhhcceeeeEeccCC-CCCCcCH
Confidence 999763 5778999999999999999999999999998887765443 22344555566777776 5678999
Q ss_pred HHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCc
Q 018300 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPR 320 (358)
Q Consensus 241 d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~ 320 (358)
++|++.+...++++|++..+++|...|+++|.++|+++|+++++|++|+.|+...+..+.++.++|++++|+||+|+||+
T Consensus 154 ~~l~~~i~~~~~~~v~~~~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~ 233 (417)
T 3n0l_A 154 EKVREIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPR 233 (417)
T ss_dssp HHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTCSCS
T ss_pred HHHHHHHHhcCCeEEEECCcccCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccccceEEEeeCccccCCCC
Confidence 99999987558999998877889999999999999999999999999999988776655566678999999999999999
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCccccccccc
Q 018300 321 GGMIFFKKDPVLGVELESAINNAVFPGLQVGFVSY 355 (358)
Q Consensus 321 GG~I~~~~~~~~~~~~~~~i~~~~f~g~q~~~~~~ 355 (358)
||+++++++ ++.+++....+++..++|+.+
T Consensus 234 ~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 263 (417)
T 3n0l_A 234 GGIIMTNDE-----ELAKKINSAIFPGIQGGPLMH 263 (417)
T ss_dssp CEEEEESCH-----HHHHHHHHHHTTTTCSSCCHH
T ss_pred eeEEEECCH-----HHHHHHhhhhCCcccCCcHHH
Confidence 999999854 788888887777777776643
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=267.56 Aligned_cols=263 Identities=52% Similarity=0.809 Sum_probs=197.7
Q ss_pred hhcccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHH
Q 018300 78 FVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (358)
Q Consensus 78 ~~~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~l 157 (358)
++..++..++|+++..+.++..++.+.+++++++|+.+|.|++++...+.+.|..|+++.+|+.+....+.+++.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (425)
T 3ecd_A 8 FFSQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERV 87 (425)
T ss_dssp HHHCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhcceeeecccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHH
Confidence 46778999999999999998888888999999999999999999999888888889998888888776667788788889
Q ss_pred HHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCC
Q 018300 158 LAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL 237 (358)
Q Consensus 158 a~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 237 (358)
++++|.+. +.++++||++|+..++.++++|||+|++.++.|++++.++. .....+..++.++++++++++.
T Consensus 88 ~~~~~~~~----~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~ 158 (425)
T 3ecd_A 88 KRLFNAGH----ANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGA-----KPALSGKWFNALQYGVSRDTML 158 (425)
T ss_dssp HHHHTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECC-----------------------CEEEEECCCTTTSS
T ss_pred HHHhCCCC----ceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecch-----hhhhcccceeeeecCCCcccCc
Confidence 99999886 34567899999999999999999999999988877544432 1224455556677777766778
Q ss_pred CCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCc
Q 018300 238 VDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLR 317 (358)
Q Consensus 238 iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~ 317 (358)
+|+++|++.+...++++|++..+++|...++++|.++|+++|++|++|++|+.|+...+..+.+++.+|++++|+||+|+
T Consensus 159 ~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~ 238 (425)
T 3ecd_A 159 IDYDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLR 238 (425)
T ss_dssp CCHHHHHHHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGC
T ss_pred cCHHHHHHHHhhcCCcEEEEccccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccC
Confidence 99999999987568999998878889999999999999999999999999999987666544445568999999999999
Q ss_pred cCcEEEEEEeCCCCchhHHHHHHhhccCCcccccccc
Q 018300 318 GPRGGMIFFKKDPVLGVELESAINNAVFPGLQVGFVS 354 (358)
Q Consensus 318 Gp~GG~I~~~~~~~~~~~~~~~i~~~~f~g~q~~~~~ 354 (358)
||+||+++++++ ++.+++....+++.+++|..
T Consensus 239 g~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 270 (425)
T 3ecd_A 239 GPRGGFVLTNDE-----EIAKKINSAVFPGLQGGPLM 270 (425)
T ss_dssp CCSCEEEEESCH-----HHHHHHHHHHC-----CCCH
T ss_pred CCCcEEEEeCCH-----HHHHHHHhhhCccccCCccH
Confidence 999999999875 67788877777777666554
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=267.20 Aligned_cols=259 Identities=51% Similarity=0.809 Sum_probs=195.8
Q ss_pred ccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC
Q 018300 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN 162 (358)
Q Consensus 83 l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg 162 (358)
+++++|+++++++++..++.+.+.+++++|+++|.|++++...+.+.+..||++.+++.+....+.+++.+++++++++|
T Consensus 11 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 90 (420)
T 3gbx_A 11 IADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG 90 (420)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHT
T ss_pred hhhcCHHHHHHHHHHHHhhhcceeeeccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhC
Confidence 78999999999999998888999999999999999999999988788888999988888887777888888899999999
Q ss_pred CCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHH
Q 018300 163 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM 242 (358)
Q Consensus 163 ~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~ 242 (358)
++++ .|+++||++|+..++.++++|||+|++.++.|+++..++. .+...+..+..++++++ +++.+|+++
T Consensus 91 ~~~~----~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~-~~~~~d~~~ 160 (420)
T 3gbx_A 91 ADYA----NVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGS-----PVNFSGKLYNIVPYGID-ESGKIDYDE 160 (420)
T ss_dssp CSEE----ECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC-----------------CHHHHSEEEEEEEC-TTCSCCHHH
T ss_pred CCCc----eeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccch-----hhhhcccceeEEeccCC-ccCCcCHHH
Confidence 9763 5667899999999999999999999999988877654432 22233444566666676 467899999
Q ss_pred HHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcEE
Q 018300 243 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322 (358)
Q Consensus 243 le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~GG 322 (358)
|++.++..++++|++..+++|...|+++|.++|+++|++|++|++|+.|+...+..+..+..+|++++|+||+|+||+||
T Consensus 161 l~~~i~~~~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gg 240 (420)
T 3gbx_A 161 MAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGG 240 (420)
T ss_dssp HHHHHHHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSSEEEEESSGGGCSCSCE
T ss_pred HHHHHHhcCCeEEEEecCccCCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCCEEEeecccCCCCCCce
Confidence 99998776799999977888999999999999999999999999999888766655555557999999999999999999
Q ss_pred EEEEeCCCCchhHHHHHHhhccCCcccccccc
Q 018300 323 MIFFKKDPVLGVELESAINNAVFPGLQVGFVS 354 (358)
Q Consensus 323 ~I~~~~~~~~~~~~~~~i~~~~f~g~q~~~~~ 354 (358)
+++++++. .++.++++...+++.+++|..
T Consensus 241 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 269 (420)
T 3gbx_A 241 LILAKGGD---EELYKKLNSAVFPSAQGGPLM 269 (420)
T ss_dssp EEEESSCC---HHHHHHHHHHHC----CCCCH
T ss_pred EEEEcCCc---HHHHHHhhhhcCCCCCCCcch
Confidence 99998721 157777777777777666543
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=244.31 Aligned_cols=256 Identities=52% Similarity=0.879 Sum_probs=201.2
Q ss_pred ccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~l 160 (358)
+.+.++||+++..+.++..++.+.+.+.+++++.++.|++++...+.+++..||++.+++.|.+...++|+.++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~ 81 (405)
T 2vi8_A 2 KYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQL 81 (405)
T ss_dssp CSHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhCHHHHHHHHHHHHHhhcceeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHH
Confidence 34677899999999998888877777788999999999999998886677677888887878777788998889999999
Q ss_pred cCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCH
Q 018300 161 FNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240 (358)
Q Consensus 161 fg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~ 240 (358)
+|+++ ..++++||+.|+..++.++++|||+|+++++.|+++..... .+...|..+++++++++++++.+|+
T Consensus 82 ~g~~~----~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d~ 152 (405)
T 2vi8_A 82 FGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGS-----PVNFSGVQYNFVAYGVDPETHVIDY 152 (405)
T ss_dssp HTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTC-----TTSHHHHHSEEEEECBCTTTCSBCH
T ss_pred hCCCc----eEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccc-----hhhhccceeEEEecccccccCCcCH
Confidence 99985 24567899999999999999999999999887766533211 1123343335666666655678999
Q ss_pred HHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCc
Q 018300 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPR 320 (358)
Q Consensus 241 d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~ 320 (358)
+++++.++..++++|+++.++++...|+++|.++|+++|+++++|++|+.|....+..+..++++|++++|+||+|+||.
T Consensus 153 ~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~ 232 (405)
T 2vi8_A 153 DDVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPR 232 (405)
T ss_dssp HHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCS
T ss_pred HHHHHHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCC
Confidence 99999887557899988767788878999999999999999999999997765444333333468999999999999888
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCccccc
Q 018300 321 GGMIFFKKDPVLGVELESAINNAVFPGLQVG 351 (358)
Q Consensus 321 GG~I~~~~~~~~~~~~~~~i~~~~f~g~q~~ 351 (358)
||++++++ ++.+++.....++..++
T Consensus 233 gG~~~~~~------~~~~~l~~~~~~~~~~~ 257 (405)
T 2vi8_A 233 GGMILCQE------QFAKQIDKAIFPGIQGG 257 (405)
T ss_dssp CEEEEECH------HHHHHHHHHHTTTTCSS
T ss_pred CeEEEEcH------HHHHHHHhhhcccccCC
Confidence 99999885 66666666544444444
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-29 Score=242.47 Aligned_cols=256 Identities=51% Similarity=0.827 Sum_probs=202.5
Q ss_pred cccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC
Q 018300 84 GEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL 163 (358)
Q Consensus 84 ~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~ 163 (358)
...||++++.++++..++...+++..++++.++.|++++...+.+.+..+||+.+++.|.+..+.+|+.+++++++++|+
T Consensus 5 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~ 84 (407)
T 2dkj_A 5 LKRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGA 84 (407)
T ss_dssp -CCCHHHHHHHHHHHHHHHTSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHhhcceeeccCCCCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCC
Confidence 45689999999999988888899999999999999999998886656667887777767776677888788899999999
Q ss_pred CCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHH
Q 018300 164 DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML 243 (358)
Q Consensus 164 ~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~l 243 (358)
++ .+++++||+.|+..++.++++|||+|+++++.|+++..... .+...|..++.++++++++++.+|++++
T Consensus 85 ~~----~~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~~l 155 (407)
T 2dkj_A 85 AW----ANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHGS-----RVNFSGKLYKVVSYGVRPDTELIDLEEV 155 (407)
T ss_dssp SE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-----TTSHHHHHSEEEEECCCTTTSSCCHHHH
T ss_pred Cc----ceEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchHH-----HHHhcCceEEEEecCCCcccCccCHHHH
Confidence 76 35677899999999999999999999999987766532111 2233454445566665555678999999
Q ss_pred HHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcEEE
Q 018300 244 EKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGM 323 (358)
Q Consensus 244 e~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~GG~ 323 (358)
++.++..++++|++..+++|...|+++|.++|+++|+++++|++|+.|+...+....+++.+|++++|+||+|+|++||+
T Consensus 156 ~~~l~~~~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G~ 235 (407)
T 2dkj_A 156 RRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGL 235 (407)
T ss_dssp HHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSCEE
T ss_pred HHHHhhcCCeEEEEeccccCCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCceE
Confidence 99987557899988767788889999999999999999999999998776555433334468999999999999999999
Q ss_pred EEEeCCCCchhHHHHHHhhccCCccccccc
Q 018300 324 IFFKKDPVLGVELESAINNAVFPGLQVGFV 353 (358)
Q Consensus 324 I~~~~~~~~~~~~~~~i~~~~f~g~q~~~~ 353 (358)
++++++ ++.+++.....++..+++.
T Consensus 236 ~~~~~~-----~~~~~l~~~~~~~~~~~~~ 260 (407)
T 2dkj_A 236 ILSNDP-----ELGKRIDKLIFPGIQGGPL 260 (407)
T ss_dssp EEESCH-----HHHHHHHHHHTTTTCSSCC
T ss_pred EEECCH-----HHHHHHHhhhcccccCCCc
Confidence 999843 6767776654444444443
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=207.56 Aligned_cols=235 Identities=19% Similarity=0.165 Sum_probs=171.0
Q ss_pred ccChHHH---HHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhccc----CCCCCCCcCCCCcHHHHHHHHHHHHHH
Q 018300 85 EADPEVC---EIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKY----SEGLPGKRYYGGNEYIDELETLCQKRA 157 (358)
Q Consensus 85 ~~d~~~~---~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~----~~G~pg~r~~~G~~~~~~lE~~~~~~l 157 (358)
.+++++. +.+++|..+|+..++.|+++|. +.|++++.+...... .+||++.| ...+++| +++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~n~--~~Vl~a~~~~~~~~~~~~~~~gy~Y~~-----~g~~~Le----~~l 83 (427)
T 3hvy_A 15 NINERVLELYERALNDVEKEFKYYDEIREYNQ--LKVLKAFQEERISESHFTNSSGYGYND-----IGRDSLD----RVY 83 (427)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCCCCTTCTTC-----HHHHHHH----HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHhcccCcCCCCCc-----hhHHHHH----HHH
Confidence 5577777 6667788888899999999997 799999988644322 34454433 2344555 458
Q ss_pred HHHcCCCCCCCcceEE--eCCCHHHHHHHHHHhccCCCEEEecC-CCCCccccc--ccccch-hccccCCceEEEEecee
Q 018300 158 LAAFNLDENKWGVNVQ--PLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSH--GFMTPK-RRVSGTSIYFESMPYRL 231 (358)
Q Consensus 158 a~lfg~~~~~~~v~V~--~~SGt~A~~~a~~all~pGD~Vl~~~-~~~ggh~s~--~~~~~~-~~~~~~g~~~~~~~~~~ 231 (358)
++++|.+.+ .++ ++||+.||..++.++++|||+|++.+ +.|+++... +....+ ..+...|. ++..++.
T Consensus 84 A~l~g~e~a----lv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~--~~~~v~~ 157 (427)
T 3hvy_A 84 ANIFNTESA----FVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGV--KYKMVDL 157 (427)
T ss_dssp HHHHTCSEE----EEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTC--EEEECCC
T ss_pred HHHhCCCce----EEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCC--EEEEecC
Confidence 999999873 444 68999999999999999999999998 777664310 000000 01223455 4455555
Q ss_pred cCCCCCCCHHHHHHHhhh-cCCeEEEEcC----CCCC--CCCCHHHHHHHHHH--cCCEEEEeccccccccccCCccCCC
Q 018300 232 DESTGLVDYDMLEKTAIL-FRPKLIIAGA----SAYP--RDFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPF 302 (358)
Q Consensus 232 ~~~~~~iD~d~le~~i~~-~~~klIi~~~----s~~~--~~~dl~~I~~ia~e--~g~~livD~Ah~~Gl~~~g~~~~pl 302 (358)
+++.+|++++++.+++ .++|+|++.. ++++ ...|+++|+++|++ +|+++++|++|+.+.. ...|+
T Consensus 158 --~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~----~~~p~ 231 (427)
T 3hvy_A 158 --KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVE----EKEPT 231 (427)
T ss_dssp --BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTS----SSCGG
T ss_pred --CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCcccccc----CCCCc
Confidence 3678999999999874 4789999877 5554 45789999999999 8999999999976642 12455
Q ss_pred C-CCcEEEEcCcCcCcc---CcEEEEEEeCCCCchhHHHHHHhhc-cCCcc
Q 018300 303 K-YCDVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAINNA-VFPGL 348 (358)
Q Consensus 303 ~-gaDiv~~S~hK~L~G---p~GG~I~~~~~~~~~~~~~~~i~~~-~f~g~ 348 (358)
+ ++|++++|+||+|+| |.||+|++++ ++.+++... ..+++
T Consensus 232 ~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~------~li~~l~~~~~~~~~ 276 (427)
T 3hvy_A 232 DVGADIIAGSLIKNIGGGIATTGGYIAGKE------EYVTQATFRVTVPGI 276 (427)
T ss_dssp GGTCSEEEEETTSGGGTTTCCSCEEEEECH------HHHHHHHHHHSCTTT
T ss_pred ccCCeEEEECCcccccccccceEEEEEECH------HHHHHHHHHhhcCCc
Confidence 6 899999999999987 8899999986 677777663 33443
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-22 Score=199.31 Aligned_cols=230 Identities=17% Similarity=0.128 Sum_probs=166.5
Q ss_pred ccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhc--cc--CCCCCCCcCCCCcHHHHHHHHHHHHHHHHH
Q 018300 85 EADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTN--KY--SEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (358)
Q Consensus 85 ~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~--~~--~~G~pg~r~~~G~~~~~~lE~~~~~~la~l 160 (358)
+-..++++.++++..++...++.+++.|. +.|++++...... .+ ++||.+ +....+++|+ +++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~a~~n~--~~Vl~A~~~~~~~~~~~~~~~gy~y-----~~~~~~~Le~----~lA~l 85 (427)
T 3i16_A 17 DRVLKLYETAMNDIQNQFKILDDIREFNQ--LKVLNAFQEERISEAHFTNSSGYGY-----GDIGRDSLDA----VYARV 85 (427)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCCCCTTCT-----TCHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHhchhHHhcCCCCCCCC-----CHHHHHHHHH----HHHHH
Confidence 44556778888888889999999999887 6899998764211 11 233332 3333455554 58999
Q ss_pred cCCCCCCCcceEE--eCCCHHHHHHHHHHhccCCCEEEecC-CCCCcccccc-cccc--hhccccCCceEEEEeceecCC
Q 018300 161 FNLDENKWGVNVQ--PLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSHG-FMTP--KRRVSGTSIYFESMPYRLDES 234 (358)
Q Consensus 161 fg~~~~~~~v~V~--~~SGt~A~~~a~~all~pGD~Vl~~~-~~~ggh~s~~-~~~~--~~~~~~~g~~~~~~~~~~~~~ 234 (358)
+|++.+ .++ ++||+.||..++.++++|||+|++.+ +.|+++.... .... ...+...|. ++..+++++
T Consensus 86 ~g~e~a----lv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~--~~~~v~~~~- 158 (427)
T 3i16_A 86 FNTESA----LVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGI--NYKQVDLKE- 158 (427)
T ss_dssp HTCSEE----EEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTC--EEEECCCCT-
T ss_pred hCCcce----EEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCC--EEEEecCcc-
Confidence 999873 344 78999999999999999999999998 7776653100 0000 001223354 555666653
Q ss_pred CCCCCHHHHHHHhhh-cCCeEEEEcC----CCCC--CCCCHHHHHHHHHH--cCCEEEEeccccccccccCCccCCCC-C
Q 018300 235 TGLVDYDMLEKTAIL-FRPKLIIAGA----SAYP--RDFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-Y 304 (358)
Q Consensus 235 ~~~iD~d~le~~i~~-~~~klIi~~~----s~~~--~~~dl~~I~~ia~e--~g~~livD~Ah~~Gl~~~g~~~~pl~-g 304 (358)
++.+|++++++.++. .++|+|++.. ++++ ...|+++|+++|++ +|+++++|++|+.+.. ...|++ +
T Consensus 159 ~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~----~~~p~~~g 234 (427)
T 3i16_A 159 DGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMD----TKEPTDVG 234 (427)
T ss_dssp TSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSS----SSCGGGGT
T ss_pred CCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccc----cCCccccC
Confidence 578999999999873 4789998876 4544 46789999999999 9999999999986542 124555 8
Q ss_pred CcEEEEcCcCcCcc---CcEEEEEEeCCCCchhHHHHHHhh
Q 018300 305 CDVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 305 aDiv~~S~hK~L~G---p~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+|++++|+||+++| +.||+|++++ ++.+++..
T Consensus 235 aDiv~~S~sK~lgg~g~~~gG~i~~~~------~li~~l~~ 269 (427)
T 3i16_A 235 ADLIAGSLIKNIGGGIAPTGGYLAGTK------DCIEKTSY 269 (427)
T ss_dssp CSEEEEETTSGGGTTTCCSCEEEEECH------HHHHHHHH
T ss_pred CeEEEecCcccCCCCCCceEEEEEECH------HHHHHHHH
Confidence 99999999999987 8899999987 56676665
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=186.74 Aligned_cols=230 Identities=18% Similarity=0.131 Sum_probs=160.5
Q ss_pred hHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCC
Q 018300 88 PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENK 167 (358)
Q Consensus 88 ~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~ 167 (358)
.++++.++++..++...++.++..|. ..|+++|..........+. ...|..+....+++|+ ++++++|.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~n~--~~vl~a~~~~~~~~~~~~~-~~~~~y~~~~~~~Le~----~lA~l~g~e~a- 77 (409)
T 3jzl_A 6 QAIRKKVETQIDDLQNKTDEIAEFNQ--AKVLDAFQENKVSDFHFHP-STGYGYDDEGRDTLER----VYATVFKTEAA- 77 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGGCC-CCTTCTTCHHHHHHHH----HHHHHHTCSEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHhhhhhhccCC-CcCCCCChhHHHHHHH----HHHHHhCCCcE-
Confidence 35677788888888888888888885 6889988765422111111 1112223344445554 58899999863
Q ss_pred CcceEE--eCCCHHHHHHHHHHhccCCCEEEecC-CCCCcccccccc-c-chhccccCCceEEEEeceecCCCCCCCHHH
Q 018300 168 WGVNVQ--PLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSHGFM-T-PKRRVSGTSIYFESMPYRLDESTGLVDYDM 242 (358)
Q Consensus 168 ~~v~V~--~~SGt~A~~~a~~all~pGD~Vl~~~-~~~ggh~s~~~~-~-~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~ 242 (358)
.++ ++||+.|+..++.++++|||+|++.+ +.|++.....-. . ....+...|. ++..+++++ ++.+|+++
T Consensus 78 ---lv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~--~~~~v~~~~-~g~~d~e~ 151 (409)
T 3jzl_A 78 ---LVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHI--GYSSVPLLE-NGDVDFPR 151 (409)
T ss_dssp ---EEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTC--EEEECCCCT-TSCCCHHH
T ss_pred ---EEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCC--EEEEeCCCC-CCCcCHHH
Confidence 444 68999999999999999999999987 666654310000 0 0001223454 555666653 57899999
Q ss_pred HHHHhhhcCCeEEEEcC----CCC--CCCCCHHHHHHHHHH--cCCEEEEeccccccccccCCccCCCC-CCcEEEEcCc
Q 018300 243 LEKTAILFRPKLIIAGA----SAY--PRDFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTH 313 (358)
Q Consensus 243 le~~i~~~~~klIi~~~----s~~--~~~~dl~~I~~ia~e--~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~h 313 (358)
+++.++. ++|+|++.. +++ +...|+++|.++|++ +|+++++|++|+.+... ..+++ ++|++++|+|
T Consensus 152 l~~ai~~-~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~----~~p~~~g~Div~~S~s 226 (409)
T 3jzl_A 152 IAKKMTP-KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEY----QEPPEVGADIIAGSLI 226 (409)
T ss_dssp HHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSS----CCSGGGTCSEEEEETT
T ss_pred HHHhccC-CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCccccccc----CCccccCCeEEEECcc
Confidence 9999864 789998876 444 456789999999999 99999999998765421 23555 8999999999
Q ss_pred CcCcc---CcEEEEEEeCCCCchhHHHHHHhh
Q 018300 314 KSLRG---PRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 314 K~L~G---p~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
|+++| +.||+|++++ ++.+++..
T Consensus 227 K~lgg~~~~~GG~v~~~~------~li~~l~~ 252 (409)
T 3jzl_A 227 KNPGGGLAKTGGYIAGKE------ALVDLCGY 252 (409)
T ss_dssp SGGGTTTCSSCEEEEECH------HHHHHHHH
T ss_pred ccCCccCCceEEEEEeCH------HHHHHHHH
Confidence 99976 5689999986 56666655
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-20 Score=184.77 Aligned_cols=235 Identities=18% Similarity=0.153 Sum_probs=162.1
Q ss_pred cccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhccc-CCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC
Q 018300 84 GEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKRALAAFN 162 (358)
Q Consensus 84 ~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~-~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg 162 (358)
.+..+++.+.++++..++...++.+...| .+.|++++........ ..+..+ |..+.... +.+++++++++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n--~~~vl~A~~~~~~~~~~~~~~~g--~~y~~~~~----~~l~~~la~~~g 79 (431)
T 3ht4_A 8 GEKIAPIVKEVESQITEVHKRADEVIESN--QFRVLESFGKHKISDSHFIPTTG--YGYDDIGR----DTLEKVYADVFG 79 (431)
T ss_dssp TTTSHHHHHHHHHHTHHHHHHHHHHHHHH--HHHHHHHHHHTTCCGGGSCCCCT--TCCSCHHH----HHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhchhhhhcCCCCC--CCCChhhH----HHHHHHHHHHhC
Confidence 44556677777788888888889887777 4688888876422111 111122 22233433 335566899999
Q ss_pred CCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecC-CCCCcccccccccc--hhccccCCceEEEEeceecCCCCCCC
Q 018300 163 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSHGFMTP--KRRVSGTSIYFESMPYRLDESTGLVD 239 (358)
Q Consensus 163 ~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~-~~~ggh~s~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~iD 239 (358)
.+.+. +.++++||+.|+..++.++++|||+|++++ +.|+++......+. ...+...|. ++..++.++ ++.+|
T Consensus 80 ~~~~~--~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~--~~~~v~~~~-~~~~d 154 (431)
T 3ht4_A 80 AEAGL--VRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNI--GYNAVPLTE-GGLVD 154 (431)
T ss_dssp CSEEC--CBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTC--EEEECCBCT-TSSBC
T ss_pred CCccc--ccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCC--EEEEeCCCC-CCCcC
Confidence 98642 233467999999999999999999999987 76765432100000 001123454 556666764 47899
Q ss_pred HHHHHHHhhhcCCeEEEEcC-CCCC-----CCCCHHHHHHHHHH--cCCEEEEeccccccccccCCccCCCC-CCcEEEE
Q 018300 240 YDMLEKTAILFRPKLIIAGA-SAYP-----RDFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-YCDVVTT 310 (358)
Q Consensus 240 ~d~le~~i~~~~~klIi~~~-s~~~-----~~~dl~~I~~ia~e--~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~ 310 (358)
+++|++.+++ ++|+|++.. ++|+ ...|+++|+++|++ +|+++++|++|+.+... ..+++ ++|++++
T Consensus 155 ~e~l~~~l~~-~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~----~~~~~~g~Di~~~ 229 (431)
T 3ht4_A 155 FEAVAAAIHS-NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEE----QEPCHVGADLMAG 229 (431)
T ss_dssp HHHHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSS----CCGGGTTCSEEEE
T ss_pred HHHHHhhcCC-CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccC----CCccccCCeEEEc
Confidence 9999999864 789998874 3333 34578999999999 99999999998865421 13445 8999999
Q ss_pred cCcCcCcc---CcEEEEEEeCCCCchhHHHHHHhh
Q 018300 311 TTHKSLRG---PRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 311 S~hK~L~G---p~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
|+||+|+| |.||++++++ ++.+++..
T Consensus 230 S~sK~lgg~~~~~GG~v~~~~------~li~~l~~ 258 (431)
T 3ht4_A 230 SLIKNPGGGIVKTGGYIVGKE------QYVEACAY 258 (431)
T ss_dssp ETTSGGGTTTCSSCEEEEECH------HHHHHHHH
T ss_pred CccccCCCCCCCceEEEEecH------HHHHHHHH
Confidence 99999876 7899999986 56666655
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=182.39 Aligned_cols=207 Identities=10% Similarity=0.107 Sum_probs=149.8
Q ss_pred ccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHH-HHHcC-CCCCCCcceEEeCCCHHHHH
Q 018300 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA-LAAFN-LDENKWGVNVQPLSGSPANF 182 (358)
Q Consensus 105 i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~l-a~lfg-~~~~~~~v~V~~~SGt~A~~ 182 (358)
|.+..++-.+++.+++++...+.+.+ |....+.++++|+ .+ ++++| .++ .+.+.|||.|+.
T Consensus 5 i~~~~p~~~~~~~i~~a~~~~~~~~~--------~~~~~~~~~~l~~----~~~a~~~g~~~~-----~v~~~sgt~al~ 67 (377)
T 3ju7_A 5 IPFLRASTVPVIEYLDELKEIDASHI--------YTNYGPINQRFEQ----TIMSGFFQNRGA-----VTTVANATLGLM 67 (377)
T ss_dssp BCSCCCCCCCGGGGHHHHHHHHHHTC--------CSSSCHHHHHHHH----HHHHHTSTTCSE-----EEEESCHHHHHH
T ss_pred eeccCCCCCCcHHHHHHHHHHHHcCC--------cccCCHHHHHHHH----HHHHHHhCCCCe-----EEEeCCHHHHHH
Confidence 44545555667888888887776532 1111234455554 57 89999 443 477889999999
Q ss_pred HHHHHh-ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcC--CeEEEEcC
Q 018300 183 EVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR--PKLIIAGA 259 (358)
Q Consensus 183 ~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~--~klIi~~~ 259 (358)
.++.++ ++|||+|+++++.|.++.. .+...|. +++.++++++++.+|++++++.+...+ +|+|+..
T Consensus 68 ~al~~l~~~~Gd~Vi~~~~~~~~~~~--------~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~- 136 (377)
T 3ju7_A 68 AAIQLKKRKKGKYALMPSFTFPATPL--------AAIWCGL--EPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY- 136 (377)
T ss_dssp HHHHHHSCTTCCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB-
T ss_pred HHHHHcCCCCcCEEEECCCCcHHHHH--------HHHHcCC--EEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE-
Confidence 999998 9999999999987765422 3345565 556666776678999999999873335 8888743
Q ss_pred CCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCC-C-CCcEEEEc--CcCcCccCcEEEEEEeCCCCchhH
Q 018300 260 SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K-YCDVVTTT--THKSLRGPRGGMIFFKKDPVLGVE 335 (358)
Q Consensus 260 s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl-~-gaDiv~~S--~hK~L~Gp~GG~I~~~~~~~~~~~ 335 (358)
+.+|...|+++|.++|+ +|++|++|++|+.|....+. ++ . .+|+.++| .||+|+++.||+++++++ +
T Consensus 137 ~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~---~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~-----~ 207 (377)
T 3ju7_A 137 ATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGM---HYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNE-----E 207 (377)
T ss_dssp CGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTE---ETTTTCSSEEEEECBTTSSSCCBSCEEEEESCH-----H
T ss_pred CCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCE---eccCCCCcEEEEECCCCCcCCCCCcEEEEECCH-----H
Confidence 23678899999999999 99999999999988654332 23 1 35666555 579998888999999886 7
Q ss_pred HHHHHhhccCCcc
Q 018300 336 LESAINNAVFPGL 348 (358)
Q Consensus 336 ~~~~i~~~~f~g~ 348 (358)
+.++++.....|.
T Consensus 208 l~~~~~~~~~~g~ 220 (377)
T 3ju7_A 208 DIQRIKRMGNFGF 220 (377)
T ss_dssp HHHHHHHHTBTTB
T ss_pred HHHHHHHHHhcCC
Confidence 8888777655443
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.8e-20 Score=175.55 Aligned_cols=198 Identities=17% Similarity=0.100 Sum_probs=141.1
Q ss_pred cccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHH
Q 018300 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (358)
Q Consensus 104 ~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~ 183 (358)
.+.+.|++..+++.|++++...+...+ +.. ..++.+.+++++++++|++.. +...+++++|++|+.
T Consensus 3 ~~~~~~gp~~~~~~v~~a~~~~~~~~~-----------~~~-~~~~~~~~~~~la~~~~~~~~-~~~v~~~~g~t~al~- 68 (384)
T 3zrp_A 3 KLLLHVGPTTIKEDVLVAGLENNVGFT-----------SKE-FVEALAYSLKGLRYVMGASKN-YQPLIIPGGGTSAME- 68 (384)
T ss_dssp ---CCSSCSCCCHHHHHHTTCCSCCTT-----------SHH-HHHHHHHHHHHHHHHHTCCTT-SEEEEEESCHHHHHH-
T ss_pred ceeccCCCCCCCHHHHHHhhccccccc-----------cHH-HHHHHHHHHHHHHHHhCCCCC-CcEEEEcCCcHHHHH-
Confidence 356778899999999999976543211 112 234445578889999999862 112355567788999
Q ss_pred HHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--
Q 018300 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-- 261 (358)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-- 261 (358)
++.++++|||+|+++++.|.++ .+. ..+...|. +++.+++++ ++.+|++++++.+++.++++|++..++
T Consensus 69 ~~~~~~~~gd~vi~~~~~~~~~---~~~---~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~np 139 (384)
T 3zrp_A 69 SVTSLLKPNDKILVVSNGVFGD---RWE---QIFKRYPV--NVKVLRPSP-GDYVKPGEVEEEVRKSEYKLVALTHVETS 139 (384)
T ss_dssp HGGGGCCTTCEEEEECSSHHHH---HHH---HHHTTSSC--EEEEECCST-TCCCCHHHHHHHHHHSCEEEEEEESEETT
T ss_pred HHHhhcCCCCEEEEecCCcchH---HHH---HHHHHcCC--cEEEecCCC-CCCCCHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 9999999999999987643221 110 11234565 445555663 568999999999887678988876544
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 262 ~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+|...|+++|.++|+++|+++++|++|+.|.. +.++. ++|++++|+||+|.|+.| |+++.+++
T Consensus 140 tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~ 205 (384)
T 3zrp_A 140 TGVREPVKDVINKIRKYVELIVVDGVSSVGAE-----EVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPK 205 (384)
T ss_dssp TTEECCHHHHHHHHGGGEEEEEEECTTTTTTS-----CCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHH
T ss_pred CceECcHHHHHHHHHhcCCEEEEECcccccCc-----cccccccCCCEEEecCcccccCCCceEEEEECHH
Confidence 45688999999999999999999999986643 22233 789999999999977655 88888773
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=175.67 Aligned_cols=205 Identities=11% Similarity=0.091 Sum_probs=147.3
Q ss_pred hcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHH
Q 018300 103 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (358)
Q Consensus 103 ~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~ 182 (358)
..+.+.|++..+++.|++++....... + ... ..++.+.+++++++++|++++. +.+.+.||+.|+.
T Consensus 11 ~~~~~~p~p~~~~~~v~~a~~~~~~~~----------~-~~~-~~~~~~~l~~~la~~~g~~~~~--~~~~~~s~t~al~ 76 (416)
T 3isl_A 11 LRTIMTPGPVEVDPRVLRVMSTPVVGQ----------F-DPA-FTGIMNETMEMLRELFQTKNRW--AYPIDGTSRAGIE 76 (416)
T ss_dssp CCEECSSSSCCCCHHHHHHTTSCCCCT----------T-SHH-HHHHHHHHHHHHHHHTTCCCSE--EEEEESCHHHHHH
T ss_pred cceeecCCCcCcCHHHHHHhcccCCCC----------c-cHH-HHHHHHHHHHHHHHHhCCCCCc--EEEecCcHHHHHH
Confidence 445677888889999999986521110 1 112 2344555788899999998741 1235667889999
Q ss_pred HHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-
Q 018300 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA- 261 (358)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~- 261 (358)
.++.++++|||+|+++++.|.++. +. ..+...|. +++.+++++ ++.+|++++++.+++.++++|++..++
T Consensus 77 ~~~~~l~~~gd~Vl~~~~~~~~~~---~~---~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~n 147 (416)
T 3isl_A 77 AVLASVIEPEDDVLIPIYGRFGYL---LT---EIAERYGA--NVHMLECEW-GTVFDPEDIIREIKKVKPKIVAMVHGET 147 (416)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHH---HH---HHHHHTTC--EEEEEECCT-TCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHhcCCCCEEEEecCCcccHH---HH---HHHHhcCC--eeEEEecCC-CCCCCHHHHHHHHhhCCCcEEEEEccCC
Confidence 999999999999999886443311 10 12344565 444555653 568999999999875578988886544
Q ss_pred -CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCCCCchhHHH
Q 018300 262 -YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE 337 (358)
Q Consensus 262 -~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~~~~~~~~~ 337 (358)
+|...|+++|.++|+++|+++++|++|+.|.. +..++ ++|++++|+||+|.||.| |+++.++ ++.
T Consensus 148 ptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~------~~~ 216 (416)
T 3isl_A 148 STGRIHPLKAIGEACRTEDALFIVDAVATIGGC-----EVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNE------RVA 216 (416)
T ss_dssp TTTEECCCHHHHHHHHHTTCEEEEECTTTTTTS-----CCCTTTTTCSEEECCSSSTTCCCSSEEEEEECH------HHH
T ss_pred CCceecCHHHHHHHHHHcCCEEEEECCccccCC-----CcchhhcCCCEEEecCccccCCCCCeEEEEECH------HHH
Confidence 45688999999999999999999999986643 22233 789999999999888766 8888776 566
Q ss_pred HHHh
Q 018300 338 SAIN 341 (358)
Q Consensus 338 ~~i~ 341 (358)
+++.
T Consensus 217 ~~~~ 220 (416)
T 3isl_A 217 DVIA 220 (416)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6665
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=176.13 Aligned_cols=207 Identities=16% Similarity=0.145 Sum_probs=148.6
Q ss_pred hcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHH
Q 018300 103 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (358)
Q Consensus 103 ~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~ 182 (358)
..+.+.|++..+++.|++++...+...+ +..+ .++.+.+++++++++|.+..+ ..+++.||+.|+.
T Consensus 13 ~~~~~~pgp~~~~~~v~~a~~~~~~~~~-----------~~~~-~~~~~~~~~~la~~~~~~~~~--~v~~~~sgt~al~ 78 (411)
T 3nnk_A 13 SRLLMGPGPINADPRVLRAMSSQLIGQY-----------DPAM-THYMNEVMALYRGVFRTENRW--TMLVDGTSRAGIE 78 (411)
T ss_dssp CCEEESSSCCCCCHHHHHHHTSCCCCTT-----------CHHH-HHHHHHHHHHHHHHHTCCCSE--EEEEESCHHHHHH
T ss_pred cceeecCCCCCCCHHHHHHhhccccccc-----------cHHH-HHHHHHHHHHHHHHhCCCCCc--EEEECCCcHHHHH
Confidence 3456778888999999999975432111 1222 234445788899999998742 1344557789999
Q ss_pred HHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-
Q 018300 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA- 261 (358)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~- 261 (358)
.++.++++|||+|++.++.|.+.. + ...+...|.. ++.++++ +++.+|+++|++.++..++++|++..++
T Consensus 79 ~~~~~~~~~gd~Vl~~~~~~~~~~---~---~~~~~~~g~~--~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~n 149 (411)
T 3nnk_A 79 AILVSAIRPGDKVLVPVFGRFGHL---L---CEIARRCRAE--VHTIEVP-WGEVFTPDQVEDAVKRIRPRLLLTVQGDT 149 (411)
T ss_dssp HHHHHHCCTTCEEEEEECSHHHHH---H---HHHHHHTTCE--EEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHhcCCCCEEEEecCCchHHH---H---HHHHHHcCCe--EEEEecC-CCCCCCHHHHHHHHhhCCCeEEEEeCCCC
Confidence 999999999999999886543311 1 0123445654 4444454 4568899999999875588988886544
Q ss_pred -CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCCCCchhHHH
Q 018300 262 -YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE 337 (358)
Q Consensus 262 -~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~~~~~~~~~ 337 (358)
+|...|+++|.++|+++|+++++|++|+.|.. +..+. ++|++++|+||+|.||.| |+++.++ ++.
T Consensus 150 ptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~-----~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~------~~~ 218 (411)
T 3nnk_A 150 STTMLQPLAELGEICRRYDALFYTDATASLGGN-----PLETDVWGLDAVSAGMQKCLGGPSGTSPITLSA------RME 218 (411)
T ss_dssp TTTEECCCTTHHHHHHHHTCEEEEECTTTBTTB-----CCCTTTTTCSEEECCSTTTTCCCSSEEEEEECH------HHH
T ss_pred CcceeccHHHHHHHHHHcCCEEEEECCcccCCc-----ccchhccCCcEEEecCccccCCCCceEEEEECH------HHH
Confidence 45678999999999999999999999986543 22233 789999999999877766 8888877 566
Q ss_pred HHHhhc
Q 018300 338 SAINNA 343 (358)
Q Consensus 338 ~~i~~~ 343 (358)
+++...
T Consensus 219 ~~~~~~ 224 (411)
T 3nnk_A 219 EAIRRR 224 (411)
T ss_dssp HHHHTT
T ss_pred HHHhhc
Confidence 666653
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-19 Score=170.25 Aligned_cols=192 Identities=14% Similarity=0.091 Sum_probs=140.0
Q ss_pred cccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceEEeCCCHHHHHHHHH
Q 018300 108 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYT 186 (358)
Q Consensus 108 ias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~-~~~~~v~V~~~SGt~A~~~a~~ 186 (358)
.++...+++.|++++...+.+. | +.. ..++.+.+++++++++|++ .+ ..+++.+|+.|+..++.
T Consensus 25 ~~~~~~~~~~v~~a~~~~~~~~----~-------~~~-~~~~~~~~~~~la~~~g~~~~~---~v~~~~g~t~a~~~~~~ 89 (386)
T 2dr1_A 25 TAGPVACFPEVLEIMKVQMFSH----R-------SKE-YRKVHMDTVERLREFLEVEKGE---VLLVPSSGTGIMEASIR 89 (386)
T ss_dssp CSSSCCCCHHHHHHTTSCCCCT----T-------SHH-HHHHHHHHHHHHHHHHTCSSSE---EEEESSCHHHHHHHHHH
T ss_pred cCCCcCCcHHHHHHHhcccccc----c-------CHH-HHHHHHHHHHHHHHHhCCCCCc---EEEEeCChHHHHHHHHH
Confidence 4677788999999987654321 1 112 2456666788899999997 32 23445677889999999
Q ss_pred HhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh-cCCeEEEEcCCC--CC
Q 018300 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-FRPKLIIAGASA--YP 263 (358)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~-~~~klIi~~~s~--~~ 263 (358)
++++|||+|+++++.|.++. +. ..+...|. +++.+++++ ++.+|+++|++.++. .++++|++..++ +|
T Consensus 90 ~l~~~gd~vl~~~~~~~~~~-~~-----~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG 160 (386)
T 2dr1_A 90 NGVSKGGKVLVTIIGAFGKR-YK-----EVVESNGR--KAVVLEYEP-GKAVKPEDLDDALRKNPDVEAVTITYNETSTG 160 (386)
T ss_dssp HHSCTTCEEEEEESSHHHHH-HH-----HHHHHTTC--EEEEEECCT-TCCCCHHHHHHHHHHCTTCCEEEEESEETTTT
T ss_pred HhhcCCCeEEEEcCCchhHH-HH-----HHHHHhCC--ceEEEecCC-CCCCCHHHHHHHHhcCCCCcEEEEEeecCCcc
Confidence 99999999999887554420 10 12334565 445555653 567999999998853 468888876544 45
Q ss_pred CCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeC
Q 018300 264 RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKK 328 (358)
Q Consensus 264 ~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~ 328 (358)
...|+++|.++|+++|+++++|++|+.|.. +.++. ++|++++|+||+|++|.| |++++++
T Consensus 161 ~~~~l~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~ 223 (386)
T 2dr1_A 161 VLNPLPELAKVAKEHDKLVFVDAVSAMGGA-----DIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSE 223 (386)
T ss_dssp EECCHHHHHHHHHHTTCEEEEECTTTBTTB-----CCCTTTTTCSEEEEETTSTTCCCSSCEEEEECH
T ss_pred hhCCHHHHHHHHHHcCCeEEEEccccccCc-----cccccccCCcEEEEeccccccCCCceEEEEECH
Confidence 678999999999999999999999987643 12233 789999999999988855 9999987
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=175.58 Aligned_cols=203 Identities=17% Similarity=0.160 Sum_probs=145.1
Q ss_pred cccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHH
Q 018300 106 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (358)
Q Consensus 106 ~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~ 185 (358)
++-.+....++.+++++...+...+ | ....+...+ .++.+++++|.+. .++++|||.|+..++
T Consensus 26 ~l~~~~p~~~~~~~~a~~~~~~~~~---~-----~~~~~~~~~----l~~~la~~~~~~~-----~i~~~~gt~al~~~l 88 (391)
T 3dr4_A 26 RISVAAPRLDGNERDYVLECMDTTW---I-----SSVGRFIVE----FEKAFADYCGVKH-----AIACNNGTTALHLAL 88 (391)
T ss_dssp --CCCCCCCCSSHHHHHHHHHHHTC---C-----SSCSHHHHH----HHHHHHHHHTCSE-----EEEESSHHHHHHHHH
T ss_pred eeccCCCCCCHHHHHHHHHHHHcCC---c-----cCCChHHHH----HHHHHHHHhCCCc-----EEEeCCHHHHHHHHH
Confidence 3334555667889999887765432 1 111233333 4556888999874 477889999999999
Q ss_pred HHh-ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC
Q 018300 186 TAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR 264 (358)
Q Consensus 186 ~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~ 264 (358)
.++ +++||+|+++++.|.++.. .+...|. +++.++++++++.+|++++++.++. ++++|+++. .+|.
T Consensus 89 ~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~n-~tG~ 156 (391)
T 3dr4_A 89 VAMGIGPGDEVIVPSLTYIASAN--------SVTYCGA--TPVLVDNDPRTFNLDAAKLEALITP-RTKAIMPVH-LYGQ 156 (391)
T ss_dssp HHHTCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCGGGSGGGCCT-TEEEECCBC-GGGC
T ss_pred HHcCCCCcCEEEECCCchHHHHH--------HHHHCCC--EEEEEecCccccCcCHHHHHHhcCC-CceEEEEEC-CCCC
Confidence 999 9999999999887766422 2334565 5566667766778999999998764 678777542 4567
Q ss_pred CCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEc--CcCcCccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 265 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTT--THKSLRGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 265 ~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S--~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
..|+++|.++|+++|+++++|++|+.|....+..... ..|++++| .||+|+|++||+++++++ ++.+++..
T Consensus 157 ~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~--~~di~~~S~s~~K~l~~g~gg~~~~~~~-----~~~~~~~~ 229 (391)
T 3dr4_A 157 ICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGS--LGDCATFSFFGNAIITTGEGGMITTNDD-----DLAAKMRL 229 (391)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS--SSSEEEEECBTTSSSCCBSCEEEEESCH-----HHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCEEEEECcccccceECCeeecc--cCCEEEEECCCCCcCCcCCeEEEEECCH-----HHHHHHHH
Confidence 8899999999999999999999999887654321111 23666666 679998888999998875 67666655
Q ss_pred cc
Q 018300 343 AV 344 (358)
Q Consensus 343 ~~ 344 (358)
..
T Consensus 230 ~~ 231 (391)
T 3dr4_A 230 LR 231 (391)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=174.70 Aligned_cols=207 Identities=14% Similarity=0.079 Sum_probs=143.5
Q ss_pred cCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-
Q 018300 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI- 188 (358)
Q Consensus 110 s~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al- 188 (358)
+...+++.|++++...+.+.+ +++...|..|... ....+.+++++++++|++++ ..+++++|+.++..++.++
T Consensus 34 ~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~---~v~~~~g~t~al~~~~~~l~ 107 (406)
T 3cai_A 34 AGMLIPDSVATTVSTAFRRSG--ASTVGAHPSARRS-AAVLDAAREAVADLVNADPG---GVVLGADRAVLLSLLAEASS 107 (406)
T ss_dssp GCCCCCHHHHHHHHHHHHHCC--SSSCSSSHHHHHH-HHHHHHHHHHHHHHHTCCGG---GEEEESCHHHHHHHHHHHTG
T ss_pred CcCCCCHHHHHHHHHHHHhcC--CCCCCccHHHHHH-HHHHHHHHHHHHHHhCCCCC---eEEEeCChHHHHHHHHHHHh
Confidence 344789999999988776533 2333333222222 23334478889999999753 2344455677888888887
Q ss_pred --ccCCCEEEecCCCCCcccccccccchhcc-ccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--CC
Q 018300 189 --LKPHDRIMGLDLPHGGHLSHGFMTPKRRV-SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA--YP 263 (358)
Q Consensus 189 --l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~--~~ 263 (358)
+++||+|+++++.|.++.... ..+ ...|. +++.++++++++.+|+++|++.++. ++++|++..++ +|
T Consensus 108 ~~~~~gd~vi~~~~~~~~~~~~~-----~~~~~~~g~--~v~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG 179 (406)
T 3cai_A 108 SRAGLGYEVIVSRLDDEANIAPW-----LRAAHRYGA--KVKWAEVDIETGELPTWQWESLISK-STRLVAVNSASGTLG 179 (406)
T ss_dssp GGGBTTCEEEEETTSCGGGTHHH-----HHHHHHHBC--EEEEECCCTTTCCCCGGGHHHHCCT-TEEEEEEESBCTTTC
T ss_pred hccCCCCEEEEcCCccHHHHHHH-----HHHHHhcCC--eEEEEecCcccCCcCHHHHHHHhCC-CceEEEEeCCcCCcc
Confidence 799999999988776643211 010 11354 4555566655678999999998864 68888876554 46
Q ss_pred CCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcEE-EEEEeCCCCchhHHHHHH
Q 018300 264 RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRGG-MIFFKKDPVLGVELESAI 340 (358)
Q Consensus 264 ~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~GG-~I~~~~~~~~~~~~~~~i 340 (358)
...|+++|.++|+++|+++++|++|+.|.. +.++. ++|++++|+||++ ||++| ++++++ ++.+++
T Consensus 180 ~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-----~~~~~~~~~d~~~~s~~K~~-g~~~G~~~~~~~------~~~~~l 247 (406)
T 3cai_A 180 GVTDLRAMTKLVHDVGALVVVDHSAAAPYR-----LLDIRETDADVVTVNAHAWG-GPPIGAMVFRDP------SVMNSF 247 (406)
T ss_dssp BBCCCHHHHHHHHHTTCEEEEECTTTTTTC-----CCCHHHHCCSEEEEEGGGGT-SCSCEEEEESCH------HHHHTS
T ss_pred ccCCHHHHHHHHHHcCCEEEEEcccccCCC-----CCCchhcCCCEEEeehhhhc-CCCcCeEEEEeh------HHHhhc
Confidence 788999999999999999999999986643 11222 7899999999976 57788 888876 565555
Q ss_pred hh
Q 018300 341 NN 342 (358)
Q Consensus 341 ~~ 342 (358)
..
T Consensus 248 ~~ 249 (406)
T 3cai_A 248 GS 249 (406)
T ss_dssp CC
T ss_pred CC
Confidence 44
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=172.54 Aligned_cols=198 Identities=22% Similarity=0.270 Sum_probs=142.6
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD 193 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD 193 (358)
.++.+.+++...+.. +..++++.++..|.. +....+++++++++|.+. .+.++||++|+..++.++++|||
T Consensus 58 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~---~~~~~l~~~la~~~~~~~-----~i~~~sGt~a~~~~l~~~~~~gd 128 (399)
T 3tqx_A 58 DHPALIKTAQTVVEQ-YGFGMASVRFICGTQ---TIHKELEKDISEFLGTDD-----TILYSSCFDANGGLFETLLGPED 128 (399)
T ss_dssp TCHHHHHHHHHHHHH-HCSCCCSCCCCCCCB---HHHHHHHHHHHHHHTCSE-----EEEESCHHHHHHTTHHHHCCTTC
T ss_pred CCHHHHHHHHHHHHH-hCCCCCCcCccccCc---hHHHHHHHHHHHHHCCCc-----EEEECchHHHHHHHHHHhcCCCC
Confidence 468999999887754 445556666655543 222335667889999874 47788999999999999999999
Q ss_pred EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc-----CCeEEEEcCCCC--CCCC
Q 018300 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAY--PRDF 266 (358)
Q Consensus 194 ~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~-----~~klIi~~~s~~--~~~~ 266 (358)
+|++.++.|+++.. .+...|. ++++++. +|++++++.++.. ++++|++..+++ |...
T Consensus 129 ~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~~------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~ 192 (399)
T 3tqx_A 129 AIISDELNHASIID--------GIRLCKA--QRYRYKN------NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIA 192 (399)
T ss_dssp EEEEETTCCHHHHH--------HHHSCCS--EEEEECT------TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEEC
T ss_pred EEEECCcccHHHHH--------HHHHcCC--ceeEeCC------CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcC
Confidence 99999887765422 3345565 3444332 5778888887653 688888876544 5578
Q ss_pred CHHHHHHHHHHcCCEEEEeccccccccccCCc--cC--CC-CCCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHHh
Q 018300 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVV--AD--PF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 267 dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~--~~--pl-~gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
|+++|.++|+++|+++++|++|+.|+...... .. .+ .+.|++++|+||+++|++||++++++ ++.+.+.
T Consensus 193 ~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~~~~~------~~~~~~~ 266 (399)
T 3tqx_A 193 DLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASGGYTSGHK------EIIEWLR 266 (399)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCCEEEEECH------HHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCceEEEEcCH------HHHHHHH
Confidence 99999999999999999999998665422110 00 11 25699999999999889999999987 4555554
Q ss_pred h
Q 018300 342 N 342 (358)
Q Consensus 342 ~ 342 (358)
.
T Consensus 267 ~ 267 (399)
T 3tqx_A 267 N 267 (399)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-19 Score=173.00 Aligned_cols=206 Identities=12% Similarity=0.074 Sum_probs=146.7
Q ss_pred cccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHH
Q 018300 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (358)
Q Consensus 104 ~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~ 183 (358)
.+.+.+++..+++.|++++...+...| . ...+.....+++++++++|+++++ ..+++++|++|+..
T Consensus 20 ~~~~~~g~~~~~~~v~~a~~~~~~~~~-----------~-~~~~~~~~~l~~~la~~~g~~~~~--~i~~~~g~t~a~~~ 85 (393)
T 2huf_A 20 KLLMGPGPSNAPQRVLDAMSRPILGHL-----------H-PETLKIMDDIKEGVRYLFQTNNIA--TFCLSASGHGGMEA 85 (393)
T ss_dssp CEECSSSCCCCCHHHHHHTTSCCCCTT-----------S-HHHHHHHHHHHHHHHHHHTCCCSE--EEEESSCHHHHHHH
T ss_pred eEEecCCCCCCCHHHHHHHHhhhccCC-----------C-HHHHHHHHHHHHHHHHHhCCCCCc--EEEEcCcHHHHHHH
Confidence 455667777889999999876543211 1 122334445788899999997631 12345677889999
Q ss_pred HHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--
Q 018300 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-- 261 (358)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-- 261 (358)
++.++++|||+|+++++.|.++. +. ..+...|. +++.+++++ ++.+|++++++.+++.++++|++..++
T Consensus 86 ~~~~~~~~gd~vl~~~~~~~~~~---~~---~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~np 156 (393)
T 2huf_A 86 TLCNLLEDGDVILIGHTGHWGDR---SA---DMATRYGA--DVRVVKSKV-GQSLSLDEIRDALLIHKPSVLFLTQGDSS 156 (393)
T ss_dssp HHHHHCCTTCEEEEEESSHHHHH---HH---HHHHHTTC--EEEEEECCT-TCCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred HHHHHhCCCCEEEEECCCcchHH---HH---HHHHHcCC--eeEEEeCCC-CCCCCHHHHHHHHhccCCcEEEEEccCCC
Confidence 99999999999999887554421 10 11223465 344555553 468999999998865478988876544
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCCCCchhHHHH
Q 018300 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 338 (358)
Q Consensus 262 ~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~~~~~~~~~~ 338 (358)
+|...|+++|.++|+++|+++++|++|+.|.. +..+. ++|++++|+||+|.||.| |++++++ ++.+
T Consensus 157 tG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~------~~~~ 225 (393)
T 2huf_A 157 TGVLQGLEGVGALCHQHNCLLIVDTVASLGGA-----PMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSH------RAVE 225 (393)
T ss_dssp TTEECCCTTHHHHHHHTTCEEEEECTTTBTTB-----CCCTTTTTCSEEECCSSSTTCCCSSCEEEEECH------HHHH
T ss_pred ccccCCHHHHHHHHHHcCCEEEEEcccccCCC-----CcchhhcCccEEEECCCcccccCCCeEEEEECH------HHHH
Confidence 45678899999999999999999999986643 22233 689999999999988777 8888876 6667
Q ss_pred HHhhc
Q 018300 339 AINNA 343 (358)
Q Consensus 339 ~i~~~ 343 (358)
++...
T Consensus 226 ~~~~~ 230 (393)
T 2huf_A 226 RYKRR 230 (393)
T ss_dssp HHHTC
T ss_pred HHhhc
Confidence 76653
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-19 Score=174.29 Aligned_cols=196 Identities=15% Similarity=0.104 Sum_probs=144.0
Q ss_pred CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-cc
Q 018300 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LK 190 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~ 190 (358)
...++.+++++...+...+ | ...+...+ +++.+++++|.+. .+++.|||.|+..++.++ ++
T Consensus 13 ~~~~~~~~~a~~~~~~~~~--------~-~~~~~~~~----l~~~la~~~~~~~-----~i~~~sgt~al~~~l~~l~~~ 74 (373)
T 3frk_A 13 DEIEYEIKFKFEEIYKRNW--------F-ILGDEDKK----FEQEFADYCNVNY-----CIGCGNGLDALHLILKGYDIG 74 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTC--------C-SSSHHHHH----HHHHHHHHHTSSE-----EEEESCHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHCCC--------c-cCCchHHH----HHHHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCC
Confidence 3456788888877765432 1 12233333 4556888999874 467889999999999999 99
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHH
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPR 270 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~ 270 (358)
|||+|+++++.|.++.. .+...|. +++.++++++++.+|++++++.+++ ++++|+.+. .+|...|+++
T Consensus 75 ~gd~Vi~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~n-~~G~~~~l~~ 142 (373)
T 3frk_A 75 FGDEVIVPSNTFIATAL--------AVSYTGA--KPIFVEPDIRTYNIDPSLIESAITE-KTKAIIAVH-LYGQPADMDE 142 (373)
T ss_dssp TTCEEEEETTSCTHHHH--------HHHHHSC--EEEEECEETTTTEECGGGTGGGCCT-TEEEEEEEC-CTTCCCCHHH
T ss_pred CcCEEEECCCCcHHHHH--------HHHHcCC--EEEEEeccccccCcCHHHHHHhcCC-CCeEEEEEC-CCcCcccHHH
Confidence 99999999987766422 2334565 5566667766788999999998865 788887543 4677899999
Q ss_pred HHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEc--CcCcCcc-CcEEEEEEeCCCCchhHHHHHHhhccC
Q 018300 271 MRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTT--THKSLRG-PRGGMIFFKKDPVLGVELESAINNAVF 345 (358)
Q Consensus 271 I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S--~hK~L~G-p~GG~I~~~~~~~~~~~~~~~i~~~~f 345 (358)
|.++|+++|+++++|++|+.|....+. ++. .+|++++| .||+|++ +.||+++++++ ++.+++.....
T Consensus 143 i~~l~~~~~~~li~D~a~~~g~~~~~~---~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~-----~~~~~~~~~~~ 213 (373)
T 3frk_A 143 IKRIAKKYNLKLIEDAAQAHGSLYKGM---KVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDK-----DLAEKIKALSN 213 (373)
T ss_dssp HHHHHHHHTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSCCSSSCEEEEESCH-----HHHHHHHHHHB
T ss_pred HHHHHHHcCCEEEEECCcccCCEECCE---eccccccEEEEeCcCCCccCccceeEEEEeCCH-----HHHHHHHHHHh
Confidence 999999999999999999987654332 222 47999888 5599987 67899999875 66666665433
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.6e-19 Score=171.47 Aligned_cols=188 Identities=14% Similarity=0.142 Sum_probs=136.0
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-ccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~pG 192 (358)
.++.+++++...+.... .+ |+.+ +...+ .++.+++++|.+. .|.++|||+|+..++.++ ++||
T Consensus 15 ~~~~~~~a~~~~l~~~~-~~-----~~~~-~~~~~----l~~~la~~~~~~~-----~i~~~sGt~al~~~l~~l~~~~g 78 (388)
T 1b9h_A 15 YDDAERNGLVRALEQGQ-WW-----RMGG-DEVNS----FEREFAAHHGAAH-----ALAVTNGTHALELALQVMGVGPG 78 (388)
T ss_dssp CCHHHHHHHHHHHHTSC-CB-----TTTC-SHHHH----HHHHHHHHTTCSE-----EEEESCHHHHHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHHcCC-ee-----ecCC-HHHHH----HHHHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCCCc
Confidence 45889999988775421 01 2222 22333 4556889999874 477889999999999999 8999
Q ss_pred CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHH
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMR 272 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~ 272 (358)
|+|+++++.|.++.. .+...|. +++.++++++++.+|+++|++.++. ++++|+.+ +.+|...|+++|.
T Consensus 79 d~Vi~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~-n~tG~~~~l~~i~ 146 (388)
T 1b9h_A 79 TEVIVPAFTFISSSQ--------AAQRLGA--VTVPVDVDAATYNLDPEAVAAAVTP-RTKVIMPV-HMAGLMADMDALA 146 (388)
T ss_dssp CEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB-CGGGCCCCHHHHH
T ss_pred CEEEECCCccHHHHH--------HHHHcCC--EEEEEecCCCcCCCCHHHHHHhcCc-CceEEEEe-CCccCcCCHHHHH
Confidence 999999887766432 2344565 4566667765678999999998864 67877722 2357788999999
Q ss_pred HHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 273 QIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 273 ~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
++|+++|++|++|++|+.|....+.....+..+++.++|.||+++|++||+++++++
T Consensus 147 ~la~~~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~~G~~~~~~~ 203 (388)
T 1b9h_A 147 KISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDG 203 (388)
T ss_dssp HHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTT
T ss_pred HHHHHcCCEEEEecchhcCCccCCeecccccceEEEEccCCCcccCCCeEEEEECCH
Confidence 999999999999999998766433211112125556666779998999999999875
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-19 Score=170.77 Aligned_cols=199 Identities=15% Similarity=0.179 Sum_probs=142.1
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al 188 (358)
++..++++.|++++...+.+.+ ++|...|..+.. ..++.+.+++++++++|++++ ..+++++|++|+..++.++
T Consensus 7 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~---~i~~~~g~~~a~~~~~~~~ 80 (382)
T 4hvk_A 7 TSAKPVDERILEAMLPYMTESF--GNPSSVHSYGFK-AREAVQEAREKVAKLVNGGGG---TVVFTSGATEANNLAIIGY 80 (382)
T ss_dssp TTCCCCCHHHHHHHHHHHHTSC--CCTTCSSHHHHH-HHHHHHHHHHHHHHHTTCTTE---EEEEESSHHHHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHHhhc--CCCcccchHHHH-HHHHHHHHHHHHHHHcCCCcC---eEEEECCchHHHHHHHHHh
Confidence 4566789999999998876643 455443322222 234455578889999999864 1244556667999999998
Q ss_pred c----cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--C
Q 018300 189 L----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA--Y 262 (358)
Q Consensus 189 l----~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~--~ 262 (358)
. +|||+|+++++.|.++.... ..+...|. ++..++++ +++.+|+++|++.+++ ++++|++..++ +
T Consensus 81 ~~~~~~~gd~vi~~~~~~~~~~~~~-----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~npt 151 (382)
T 4hvk_A 81 AMRNARKGKHILVSAVEHMSVINPA-----KFLQKQGF--EVEYIPVG-KYGEVDVSFIDQKLRD-DTILVSVQHANNEI 151 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHHH-----HHHHHTTC--EEEEECBC-TTSCBCHHHHHHHCCT-TEEEEECCSBCTTT
T ss_pred hhhhcCCCCEEEECCCCcHHHHHHH-----HHHHhcCC--EEEEeccC-CCCCcCHHHHHHHhcc-CceEEEEECCCCCc
Confidence 7 99999999988766543211 11222455 44555566 4578999999998864 67888886655 4
Q ss_pred CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 263 ~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
|...|+++|.++|+++|+ +++|++|+.|.. +.++. ++|++++|+||++ ||.| |+++.+++
T Consensus 152 G~~~~~~~i~~l~~~~~~-li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~-g~~g~g~~~~~~~ 214 (382)
T 4hvk_A 152 GTIQPVEEISEVLAGKAA-LHIDATASVGQI-----EVDVEKIGADMLTISSNDIY-GPKGVGALWIRKE 214 (382)
T ss_dssp CBBCCHHHHHHHHSSSSE-EEEECTTTBTTB-----CCCHHHHTCSEEEEESGGGT-SCTTCEEEEEETT
T ss_pred eeeCCHHHHHHHHHHcCE-EEEEhHHhcCCC-----CCCchhcCCCEEEEeHHHhc-CCCceEEEEEcCc
Confidence 568899999999999999 999999987643 22233 7899999999964 6654 88887765
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=174.64 Aligned_cols=201 Identities=21% Similarity=0.194 Sum_probs=146.4
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al 188 (358)
.+....++.+++++...+...+ |+ ..+...++ ++.+++++|.+. .++++|||.|+..++.++
T Consensus 9 ~~~~~~~~~v~~a~~~~~~~~~--------~~-~~~~~~~l----~~~la~~~~~~~-----~~~~~sGt~al~~al~~~ 70 (367)
T 3nyt_A 9 NQQARIKDKIDAGIQRVLRHGQ--------YI-LGPEVTEL----EDRLADFVGAKY-----CISCANGTDALQIVQMAL 70 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC--------CS-SCHHHHHH----HHHHHHHHTCSE-----EEEESCHHHHHHHHHHHT
T ss_pred ccccccCHHHHHHHHHHHhcCC--------cc-CChHHHHH----HHHHHHHhCCCc-----EEEeCCHHHHHHHHHHHh
Confidence 3444567888888887765431 22 22333444 456888999874 477889999999999999
Q ss_pred -ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCC
Q 018300 189 -LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 267 (358)
Q Consensus 189 -l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~d 267 (358)
++|||+|+++++.|.++.. .+...|. +++.++++++++.+|++++++.+++ ++++|+.+ +.+|...|
T Consensus 71 ~~~~gd~Vi~~~~~~~~~~~--------~~~~~G~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~-~~~G~~~~ 138 (367)
T 3nyt_A 71 GVGPGDEVITPGFTYVATAE--------TVALLGA--KPVYVDIDPRTYNLDPQLLEAAITP-RTKAIIPV-SLYGQCAD 138 (367)
T ss_dssp TCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCGGGTGGGCCT-TEEEECCB-CGGGCCCC
T ss_pred CCCCcCEEEECCCccHHHHH--------HHHHcCC--EEEEEecCCccCCcCHHHHHHhcCc-CCcEEEee-CCccChhh
Confidence 9999999999886655421 2344565 5566677776789999999998864 77887743 24577889
Q ss_pred HHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcC--cCcCcc-CcEEEEEEeCCCCchhHHHHHHhhcc
Q 018300 268 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTT--HKSLRG-PRGGMIFFKKDPVLGVELESAINNAV 344 (358)
Q Consensus 268 l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~--hK~L~G-p~GG~I~~~~~~~~~~~~~~~i~~~~ 344 (358)
+++|.++|+++|++|++|++|+.|....+..... ..|++++|+ ||++++ +.||+++++++ ++.+++....
T Consensus 139 ~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~--~~di~~~Sf~~~K~l~~~g~gg~~~~~~~-----~l~~~~~~~~ 211 (367)
T 3nyt_A 139 FDAINAIASKYGIPVIEDAAQSFGASYKGKRSCN--LSTVACTSFFPSAPLGCYGDGGAIFTNDD-----ELATAIRQIA 211 (367)
T ss_dssp HHHHHHHHHHTTCCBEEECTTTTTCEETTEETTS--SSSEEEEECCTTSSSCCSSCCEEEEESCH-----HHHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEEEECccccCCeECCeeccC--CCCEEEEECCCCCcCCCcCceeEEEeCCH-----HHHHHHHHHH
Confidence 9999999999999999999999887644321111 239999995 899977 46899999775 7777776644
Q ss_pred CC
Q 018300 345 FP 346 (358)
Q Consensus 345 f~ 346 (358)
..
T Consensus 212 ~~ 213 (367)
T 3nyt_A 212 RH 213 (367)
T ss_dssp BT
T ss_pred hc
Confidence 33
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.4e-19 Score=172.45 Aligned_cols=202 Identities=17% Similarity=0.119 Sum_probs=142.3
Q ss_pred cCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-
Q 018300 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI- 188 (358)
Q Consensus 110 s~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al- 188 (358)
....+++.+++++...+.+.....|+. ..|.. ++.+.+++++++++|++. .++++|||+|+..++.++
T Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~g~~---~l~~~l~~~la~~~g~~~-----~i~~~~gt~al~~~~~~~~ 78 (418)
T 2c81_A 10 EWPQHSDRTRRKIEEVFQSNRWAISGY---WTGEE---SMERKFAKAFADFNGVPY-----CVPTTSGSTALMLALEALG 78 (418)
T ss_dssp CSSCCCHHHHHHHHHHHHHTCCSTTSB---CCSSC---CHHHHHHHHHHHHHTCSE-----EEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHhcCCccccCc---ccCCH---HHHHHHHHHHHHHhCCCc-----EEEeCCHHHHHHHHHHHcC
Confidence 344568999999988776532111321 12321 122335567889999874 477889999999999999
Q ss_pred ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCH
Q 018300 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDY 268 (358)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl 268 (358)
++|||+|+++++.|.++.. .+...|. +++.++++++++.+|++++++.++. ++++|++.. .+|...|+
T Consensus 79 ~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~G~~~~~ 146 (418)
T 2c81_A 79 IGEGDEVIVPSLTWIATAT--------AVLNVNA--LPVFVDVEADTYCIDPQLIKSAITD-KTKAIIPVH-LFGSMANM 146 (418)
T ss_dssp CCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCHHHHGGGCCT-TEEEECCBC-CTTCCCCH
T ss_pred CCCcCEEEECCCccHhHHH--------HHHHcCC--EEEEEecCCCCCCcCHHHHHHhhCC-CCeEEEEeC-CcCCcccH
Confidence 8999999999887665422 2344565 4556667655678999999998864 688887654 46778899
Q ss_pred HHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcC--cCcCccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 269 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTT--HKSLRGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 269 ~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~--hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
++|.++|+++|++|++|++|+.|....+. ++. ..|+.++|+ ||++++++||+++++++ ++.+++..
T Consensus 147 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~---~~~~~~~~~~~s~s~~K~~~~g~~g~~~~~~~-----~l~~~~~~ 215 (418)
T 2c81_A 147 DEINEIAQEHNLFVIEDCAQSHGSVWNNQ---RAGTIGDIGAFSCQQGKVLTAGEGGIIVTKNP-----RLFELIQQ 215 (418)
T ss_dssp HHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSCSSSCEEEEESCH-----HHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEECcccccCccCCE---ecccccceEEEeccCCcccCCCCeEEEEECCH-----HHHHHHHH
Confidence 99999999999999999999977533221 122 235555555 99986668899998654 56666554
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=169.32 Aligned_cols=197 Identities=15% Similarity=0.155 Sum_probs=141.8
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-ccC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKP 191 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~p 191 (358)
.+++.+++++...+.+.|. . ..| +...+ .++.+++++|.+. .+++++|++|+..++.++ ++|
T Consensus 9 ~~~~~v~~a~~~~~~~~~~----~---~~g-~~~~~----l~~~la~~~~~~~-----v~~~~ggt~al~~~~~~l~~~~ 71 (394)
T 1o69_A 9 HMGGNELKYIEEVFKSNYI----A---PLG-EFVNR----FEQSVKDYSKSEN-----ALALNSATAALHLALRVAGVKQ 71 (394)
T ss_dssp ---CCHHHHHHHHHHHTTT----S---CTT-HHHHH----HHHHHHHHHCCSE-----EEEESCHHHHHHHHHHHTTCCT
T ss_pred CCCHHHHHHHHHHHHcCCc----c---CCC-hHHHH----HHHHHHHHhCCCc-----EEEeCCHHHHHHHHHHHcCCCC
Confidence 4567888888877755331 1 012 22333 4556888999843 366778889999999999 999
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc--CCeEEEEcCCCCCCCCCHH
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPRDFDYP 269 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~--~~klIi~~~s~~~~~~dl~ 269 (358)
||+|+++++.|.++.. .+...|. +++.++++ +++.+|++++++.+++. ++++|++.. .+|...|++
T Consensus 72 gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~~~v~~~~-~~G~~~~l~ 139 (394)
T 1o69_A 72 DDIVLASSFTFIASVA--------PICYLKA--KPVFIDCD-ETYNIDVDLLKLAIKECEKKPKALILTH-LYGNAAKMD 139 (394)
T ss_dssp TCEEEEESSSCGGGTH--------HHHHTTC--EEEEECBC-TTSSBCHHHHHHHHHHCSSCCCEEEEEC-GGGCCCCHH
T ss_pred CCEEEECCCccHHHHH--------HHHHcCC--EEEEEEeC-CCCCcCHHHHHHHHhcccCCceEEEEEC-CCCChhhHH
Confidence 9999999987766432 2334565 44555566 46789999999988753 688887764 567788999
Q ss_pred HHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 270 RMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 270 ~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
+|.++|+++|+++++|++|+.|+...+.....+..+|+.++|.||.++|+++|+++++++ ++.+++...
T Consensus 140 ~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~-----~l~~~l~~~ 208 (394)
T 1o69_A 140 EIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNK-----EKIEKARFY 208 (394)
T ss_dssp HHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCH-----HHHHHHHHH
Confidence 999999999999999999998876544321223367888899999998888999999754 666666553
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-19 Score=170.07 Aligned_cols=206 Identities=14% Similarity=0.084 Sum_probs=146.3
Q ss_pred hcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHH
Q 018300 103 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (358)
Q Consensus 103 ~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~ 182 (358)
..+.+.|++..+++.|++++...+...+ ... ..++....++++++++|.+..+ ..+++.+|+.|+.
T Consensus 23 ~~~~~~p~p~~~~~~v~~a~~~~~~~~~-----------~~~-~~~~~~~l~~~la~~~~~~~~~--~v~~~~gg~~al~ 88 (393)
T 3kgw_A 23 TRLLLGPGPSNLAPRVLAAGSLRMIGHM-----------QKE-MLQIMEEIKQGIQYVFQTRNPL--TLVVSGSGHCAME 88 (393)
T ss_dssp CCEECSSSCCCCCHHHHHHTTCCCCCTT-----------SHH-HHHHHHHHHHHHHHHHTCCCSE--EEEESCCTTTHHH
T ss_pred cceeccCCCCCCCHHHHHHhcccccCcc-----------cHH-HHHHHHHHHHHHHHHhCCCCCc--EEEEeCCcHHHHH
Confidence 4456778888999999999975332111 111 2234445688899999997642 1245567889999
Q ss_pred HHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-
Q 018300 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA- 261 (358)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~- 261 (358)
.++.++++|||+|++..+ +|+++.+ ...+...|.. ++.+++++ ++.+|+++|++.+++.++++|++..++
T Consensus 89 ~~~~~~~~~gd~vl~~~~---~~~~~~~---~~~~~~~g~~--~~~~~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~n 159 (393)
T 3kgw_A 89 TALFNLLEPGDSFLTGTN---GIWGMRA---AEIADRIGAR--VHQMIKKP-GEHYTLQEVEEGLAQHKPVLLFLVHGES 159 (393)
T ss_dssp HHHHHHCCTTCEEEEEES---SHHHHHH---HHHHHHTTCE--EEEEECCT-TCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHhcCCCCCEEEEEeC---CchhHHH---HHHHHHcCCc--eEEEeCCC-CCCCCHHHHHHHHhhCCCcEEEEeccCC
Confidence 999999999999999864 3321111 0123345654 44445553 458999999999876578988876554
Q ss_pred -CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCCCCchhHHH
Q 018300 262 -YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE 337 (358)
Q Consensus 262 -~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~~~~~~~~~ 337 (358)
+|...|+++|.++|+++|+++++|++|+.|.. +..++ ++|++++|+||+|.|+.| |++++++ ++.
T Consensus 160 ptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~-----~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~------~~~ 228 (393)
T 3kgw_A 160 STGVVQPLDGFGELCHRYQCLLLVDSVASLGGV-----PIYMDQQGIDIMYSSSQKVLNAPPGISLISFND------KAK 228 (393)
T ss_dssp TTTEECCCTTHHHHHHHTTCEEEEECTTTTTTS-----CCCTTTTTCCEEEEESSSTTCCCSSCEEEEECH------HHH
T ss_pred cchhhccHHHHHHHHHHcCCEEEEECCccccCc-----ccchhhcCCCEEEecCcccccCCCceeEEEECH------HHH
Confidence 45678999999999999999999999986633 12223 689999999999987766 8888877 566
Q ss_pred HHHhh
Q 018300 338 SAINN 342 (358)
Q Consensus 338 ~~i~~ 342 (358)
+++..
T Consensus 229 ~~~~~ 233 (393)
T 3kgw_A 229 YKVYS 233 (393)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 66654
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.2e-19 Score=169.36 Aligned_cols=206 Identities=13% Similarity=0.071 Sum_probs=143.8
Q ss_pred hcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHH
Q 018300 103 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (358)
Q Consensus 103 ~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~ 182 (358)
...++.|++..+++.|++++...+...+ +..+ .++.+.+++++++++|++.. ..+.+.++||++|+.
T Consensus 19 ~~~~~~pgp~~~~~~v~~a~~~~~~~~~-----------~~~~-~~~~~~~~~~la~~~g~~~~-~~~i~~~~ggt~al~ 85 (376)
T 3f0h_A 19 GMLNFTVGPVMSSEEVRAIGAEQVPYFR-----------TTEF-SSTMLENEKFMLEYAKAPEG-SKAVFMTCSSTGSME 85 (376)
T ss_dssp SCEECSSSSCCCCHHHHHHHTSCCCCCS-----------SHHH-HHHHHHHHHHHHHHHTCCTT-CEEEEESSCHHHHHH
T ss_pred CceeecCCCCCCcHHHHHHhcCCCCCCC-----------CHHH-HHHHHHHHHHHHHHhCCCCC-ceEEEEcCChhHHHH
Confidence 5678889999999999999976442211 1122 23444578889999999752 112223456689999
Q ss_pred HHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-
Q 018300 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA- 261 (358)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~- 261 (358)
.++.++++|||+|+++++.+.++ .+. ......|..+. .++.+ .++.+|++++++.+. .++++|++..++
T Consensus 86 ~~~~~~~~~gd~vi~~~~~~~~~---~~~---~~~~~~g~~~~--~v~~~-~~~~~d~~~l~~~~~-~~~~~v~~~~~~n 155 (376)
T 3f0h_A 86 AVVMNCFTKKDKVLVIDGGSFGH---RFV---QLCEIHEIPYV--ALKLE-HGKKLTKEKLYEYDN-QNFTGLLVNVDET 155 (376)
T ss_dssp HHHHHHCCTTCCEEEEESSHHHH---HHH---HHHHHTTCCEE--EEECC-TTCCCCHHHHHTTTT-SCCCEEEEESEET
T ss_pred HHHHhccCCCCeEEEEeCChhhH---HHH---HHHHHcCCceE--EEeCC-CCCCCCHHHHHHhhc-cCceEEEEecccC
Confidence 99999999999999986532222 110 11233455444 34444 356899999998764 478888876433
Q ss_pred -CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCCCCchhHHH
Q 018300 262 -YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE 337 (358)
Q Consensus 262 -~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~~~~~~~~~ 337 (358)
+|...|+++|.++|+++|+++++|++|+.|.. +..++ ++|++++|+||+|+|+.| |+++.++ ++.
T Consensus 156 ptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~------~~~ 224 (376)
T 3f0h_A 156 STAVLYDTMMIGEFCKKNNMFFVCDCVSAFLAD-----PFNMNECGADVMITGSQKVLACPPGISVIVLAP------RGV 224 (376)
T ss_dssp TTTEECCHHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHHHTCSEEEEETTTTTCCCSSCEEEEECH------HHH
T ss_pred CcceecCHHHHHHHHHHcCCEEEEEcCccccCc-----cccccccCccEEEecCcccccCCCceEEEEECH------HHH
Confidence 56788999999999999999999999886532 22233 689999999999986666 7877776 566
Q ss_pred HHHhh
Q 018300 338 SAINN 342 (358)
Q Consensus 338 ~~i~~ 342 (358)
+++..
T Consensus 225 ~~~~~ 229 (376)
T 3f0h_A 225 ERVEK 229 (376)
T ss_dssp HHHHT
T ss_pred HHhhc
Confidence 66654
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.7e-19 Score=170.37 Aligned_cols=203 Identities=12% Similarity=0.058 Sum_probs=145.0
Q ss_pred ccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHH
Q 018300 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (358)
Q Consensus 105 i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a 184 (358)
+...++...+++.|++++...+.+. | +.. ..++.+.+++++++++|++++ . ..+++.+|++|+..+
T Consensus 36 ~l~~~~~~~~~~~v~~a~~~~~~~~----~-------~~~-~~~~~~~~~~~la~~~g~~~~-~-~v~~t~g~t~al~~~ 101 (393)
T 1vjo_A 36 LLLGPGPSNAHPSVLQAMNVSPVGH----L-------DPA-FLALMDEIQSLLRYVWQTENP-L-TIAVSGTGTAAMEAT 101 (393)
T ss_dssp EECSSSCCCCCHHHHHHHSSCCCCT----T-------SHH-HHHHHHHHHHHHHHHHTCCCS-C-EEEESSCHHHHHHHH
T ss_pred eeccCCCCCCCHHHHHHHhcccccc----c-------CHH-HHHHHHHHHHHHHHHhCCCCC-c-EEEEeCchHHHHHHH
Confidence 3445677788999999997655331 1 112 234555678889999999753 1 124445677899999
Q ss_pred HHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--C
Q 018300 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA--Y 262 (358)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~--~ 262 (358)
+.++++|||+|+++++.|.+. ++. ..+...|. +++.+++++ ++.+|+++|++.+++.++++|++..++ +
T Consensus 102 ~~~~~~~gd~Vl~~~~~~~~~-~~~-----~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~v~~~~~~npt 172 (393)
T 1vjo_A 102 IANAVEPGDVVLIGVAGYFGN-RLV-----DMAGRYGA--DVRTISKPW-GEVFSLEELRTALETHRPAILALVHAETST 172 (393)
T ss_dssp HHHHCCTTCEEEEEESSHHHH-HHH-----HHHHHTTC--EEEEEECCT-TCCCCHHHHHHHHHHHCCSEEEEESEETTT
T ss_pred HHhccCCCCEEEEEcCChhHH-HHH-----HHHHHcCC--ceEEEecCC-CCCCCHHHHHHHHhhCCceEEEEeccCCCc
Confidence 999999999999988755441 011 12334565 444555653 567999999998865378888876554 4
Q ss_pred CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCCCCchhHHHHH
Q 018300 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 339 (358)
Q Consensus 263 ~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~~~~~~~~~~~ 339 (358)
|...|+++|.++|+++|+++++|++|+.|.. +..++ ++|++++|+||+|.+|.+ |++++++ ++.++
T Consensus 173 G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~-----~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~------~~~~~ 241 (393)
T 1vjo_A 173 GARQPLEGVGELCREFGTLLLVDTVTSLGGV-----PIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSS------RAIEK 241 (393)
T ss_dssp TEECCCTTHHHHHHHHTCEEEEECTTTTTTS-----CCCTTTTTCSEEECCSSSTTCSCSSCEEEEECH------HHHHH
T ss_pred ceeccHHHHHHHHHHcCCEEEEECCccccCc-----CCcccccCccEEEEcCcccccCCCceEEEEECH------HHHHH
Confidence 5678999999999999999999999986532 22333 689999999999987765 8999887 56666
Q ss_pred Hh
Q 018300 340 IN 341 (358)
Q Consensus 340 i~ 341 (358)
+.
T Consensus 242 ~~ 243 (393)
T 1vjo_A 242 LQ 243 (393)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.4e-19 Score=169.18 Aligned_cols=199 Identities=15% Similarity=0.169 Sum_probs=140.8
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al 188 (358)
++...+++.|++++...+.+.+ ++++..|..+.... +....+++++++++|++++ ..+++.+|++|+..++.++
T Consensus 7 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~l~~~la~~~g~~~~---~v~~~~g~t~a~~~~~~~l 80 (382)
T 4eb5_A 7 TSAKPVDERILEAMLPYMTESF--GNPSSVHSYGFKAR-EAVQEAREKVAKLVNGGGG---TVVFTSGATEANNLAIIGY 80 (382)
T ss_dssp TTCCCCCHHHHHHHHHHHHTSC--CCTTCSSHHHHHHH-HHHHHHHHHHHHHHTCTTE---EEEEESSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhcc--CCCCCCcHHHHHHH-HHHHHHHHHHHHHhCCCCC---eEEEcCchHHHHHHHHHHH
Confidence 3445789999999998876532 44443333232222 3344478889999999753 2345567788999999998
Q ss_pred c----cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--
Q 018300 189 L----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY-- 262 (358)
Q Consensus 189 l----~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~-- 262 (358)
. +|||+|+++++.|.++... ...+...|. +++.+++++ ++.+|+++|++.++. ++++|++..+++
T Consensus 81 ~~~~~~~gd~Vl~~~~~~~~~~~~-----~~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~-~~~~v~~~~~~npt 151 (382)
T 4eb5_A 81 AMRNARKGKHILVSAVEHMSVINP-----AKFLQKQGF--EVEYIPVGK-YGEVDVSFIDQKLRD-DTILVSVQHANNEI 151 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHH-----HHHHTTTTC--EEEEECBCT-TSCBCHHHHHHHCCT-TEEEEECCSBCTTT
T ss_pred HhhccCCCCEEEECCCcchHHHHH-----HHHHHhCCc--EEEEeccCC-CCccCHHHHHHHhcC-CCeEEEEeccCCCc
Confidence 7 8999999998866554221 011122455 455555663 578999999998864 688888766554
Q ss_pred CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 263 ~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
|...|+++|.++|+++|++ ++|++|+.|.. +.++. ++|++++|+||+ .||.| |+++++++
T Consensus 152 G~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~-----~~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~ 214 (382)
T 4eb5_A 152 GTIQPVEEISEVLAGKAAL-HIDATASVGQI-----EVDVEKIGADMLTISSNDI-YGPKGVGALWIRKE 214 (382)
T ss_dssp CBBCCHHHHHHHHTTSSEE-EEECTTTBTTB-----CCCHHHHTCSEEEEETGGG-TCCSSCEEEEEETT
T ss_pred cccCCHHHHHHHHHHCCCE-EEEcchhcCCc-----ccCccccCCCEEEeehHHh-cCCCceEEEEEccc
Confidence 5688999999999999999 99999986532 22232 689999999997 56765 88888775
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-18 Score=169.23 Aligned_cols=199 Identities=14% Similarity=0.074 Sum_probs=141.1
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al 188 (358)
++...+++.|++++...+.+. + +.... .....+++++++++|++++ ..+++++|++|+..++.++
T Consensus 15 ~~~~~~~~~v~~a~~~~~~~~--------~---~~~~~-~~~~~l~~~la~~~g~~~~---~v~~t~g~t~a~~~~~~~~ 79 (392)
T 2z9v_A 15 AGPVNAYPEVLRGLGRTVLYD--------Y---DPAFQ-LLYEKVVDKAQKAMRLSNK---PVILHGEPVLGLEAAAASL 79 (392)
T ss_dssp SSCCCCCHHHHHHTTSCCCCT--------T---SHHHH-HHHHHHHHHHHHHTTCSSC---CEEESSCTHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHhcccccc--------c---cHHHH-HHHHHHHHHHHHHhCCCCC---EEEEeCCchHHHHHHHHHh
Confidence 556678999999987655321 1 11222 2333467889999999753 2345567788999999999
Q ss_pred ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh-cCCeEEEEcCCCC--CCC
Q 018300 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-FRPKLIIAGASAY--PRD 265 (358)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~-~~~klIi~~~s~~--~~~ 265 (358)
++|||+|+++++.|.++. +. ..+...|.. ++.+++++ ++.+|++++++.++. .++++|++..+++ |..
T Consensus 80 ~~~gd~Vl~~~~~~~~~~---~~---~~~~~~g~~--~~~v~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~ 150 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKG---FG---YWAKRYSPH--LLEIEVPY-NEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTI 150 (392)
T ss_dssp CCTTCCEEEEESSHHHHH---HH---HHHHHHCSC--EEEEECCT-TSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEE
T ss_pred cCCCCEEEEecCCcccHH---HH---HHHHHcCCc--eEEeeCCC-CCCCCHHHHHHHHhcCCCCcEEEEeccCCCCcee
Confidence 999999999887544331 10 111224553 44445553 467999999998853 3688888866554 667
Q ss_pred CCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCCCCchhHHHHHHhh
Q 018300 266 FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 266 ~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~~~~~~~~~~~i~~ 342 (358)
.|+++|.++|+++|+++++|++|+.|.. +.++. ++|++++|+||++.||.| |++++++ ++.+++..
T Consensus 151 ~~l~~i~~l~~~~~~~li~D~a~~~g~~-----~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~------~~~~~l~~ 219 (392)
T 2z9v_A 151 NPIDAIGALVSAHGAYLIVDAVSSFGGM-----KTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSE------RAWAKMKA 219 (392)
T ss_dssp CCHHHHHHHHHHTTCEEEEECTTTBTTB-----SCCGGGGTCSEEEECSSSTTCCCSCCEEEEECH------HHHHHHHT
T ss_pred ccHHHHHHHHHHcCCeEEEEcccccCCc-----ccccccccceEEEecCcccccCCCceeEEEECH------HHHHHhhh
Confidence 8999999999999999999999986533 22233 689999999999988777 8998876 56666643
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-18 Score=163.62 Aligned_cols=200 Identities=18% Similarity=0.077 Sum_probs=141.4
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al 188 (358)
.....+++.|.+++...+...+ +++. ......++++.+++++++++|++.++ .+++++|++|+..++.++
T Consensus 37 ~~~~~~~~~v~~a~~~~~~~~~--~~~~-----~~~~~~~~~~~l~~~la~~~~~~~~~---i~~~~ggt~a~~~~~~~~ 106 (397)
T 3f9t_A 37 SMCSNVLPITRKIVDIFLETNL--GDPG-----LFKGTKLLEEKAVALLGSLLNNKDAY---GHIVSGGTEANLMALRCI 106 (397)
T ss_dssp CSCCCCCTHHHHHHHHHTTCCT--TSGG-----GBHHHHHHHHHHHHHHHHHTTCTTCE---EEEESCHHHHHHHHHHHH
T ss_pred EecCCCcHHHHHHHHHHHhhcC--CCcc-----cChhHHHHHHHHHHHHHHHhCCCCCC---EEEecCcHHHHHHHHHHH
Confidence 4455678899999988765433 2221 11234567777889999999998742 355667888999999998
Q ss_pred ccC-------------CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEE
Q 018300 189 LKP-------------HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 255 (358)
Q Consensus 189 l~p-------------GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klI 255 (358)
.++ ||+|++.++.|.++.. .+...|. +++.+++++ ++.+|+++|++.+++.++++|
T Consensus 107 ~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~v 175 (397)
T 3f9t_A 107 KNIWREKRRKGLSKNEHPKIIVPITAHFSFEK--------GREMMDL--EYIYAPIKE-DYTIDEKFVKDAVEDYDVDGI 175 (397)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEETTCCTHHHH--------HHHHHTC--EEEEECBCT-TSSBCHHHHHHHHHHSCCCEE
T ss_pred HHHHHhhhhhcccCCCCeEEEECCcchhHHHH--------HHHHcCc--eeEEEeeCC-CCcCCHHHHHHHHhhcCCeEE
Confidence 766 9999999887665321 2334565 445555663 578999999999876467777
Q ss_pred EEcCCC--CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCc-------cCCCC---CCcEEEEcCcCcCccC-cEE
Q 018300 256 IAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-------ADPFK---YCDVVTTTTHKSLRGP-RGG 322 (358)
Q Consensus 256 i~~~s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-------~~pl~---gaDiv~~S~hK~L~Gp-~GG 322 (358)
++..++ +|...|+++|.++|+++|+++++|++|+.+....... ..+++ ++|++++|+||++.+| +.|
T Consensus 176 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~~~~g 255 (397)
T 3f9t_A 176 IGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSG 255 (397)
T ss_dssp EEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGGTCSEEECCTTTTTCCCSSCE
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccccCCeEEEccccccCCCCCce
Confidence 765544 4567899999999999999999999998554321100 01222 6899999999998555 568
Q ss_pred EEEEeCC
Q 018300 323 MIFFKKD 329 (358)
Q Consensus 323 ~I~~~~~ 329 (358)
+++++++
T Consensus 256 ~~~~~~~ 262 (397)
T 3f9t_A 256 GILFKDI 262 (397)
T ss_dssp EEEESSG
T ss_pred EEEEeCH
Confidence 8777765
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-18 Score=164.81 Aligned_cols=207 Identities=15% Similarity=0.148 Sum_probs=143.7
Q ss_pred hcccccccCC---CCcHHHHHHHhhhhhcccCCCCCCCcCCCC-cHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH
Q 018300 103 KSLELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 178 (358)
Q Consensus 103 ~~i~lias~n---~~s~~V~~al~~~l~~~~~~G~pg~r~~~G-~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt 178 (358)
.-+++..+++ .+++.+++++...+.+ +..+++..+|..| .+.. ..+++.+++++|++. .++++||+
T Consensus 40 ~~id~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~----~~l~~~la~~~g~~~-----~i~~~sGt 109 (384)
T 1bs0_A 40 QYLNFSSNDYLGLSHHPQIIRAWQQGAEQ-FGIGSGGSGHVSGYSVVH----QALEEELAEWLGYSR-----ALLFISGF 109 (384)
T ss_dssp EEEECSCCCTTSGGGCHHHHHHHHHHHHH-HCSCCCSBTTTTCCCHHH----HHHHHHHHHHHTCSE-----EEEESCHH
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHHH-hCCCCCCcCcccCChHHH----HHHHHHHHHHhCCCc-----EEEeCCcH
Confidence 3455555454 4789999999887754 2234444444333 2322 235667888999863 47789999
Q ss_pred HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc--CCeEEE
Q 018300 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLII 256 (358)
Q Consensus 179 ~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~--~~klIi 256 (358)
+|+..++.++++|||+|++.++.|+++.. .+...|.. ++.++ .+|++++++.+++. ++++|+
T Consensus 110 ~a~~~~~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~~--~~~~~------~~d~~~l~~~l~~~~~~~~~v~ 173 (384)
T 1bs0_A 110 AANQAVIAAMMAKEDRIAADRLSHASLLE--------AASLSPSQ--LRRFA------HNDVTHLARLLASPCPGQQMVV 173 (384)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTCCHHHHH--------HHHTSSSE--EEEEC------TTCHHHHHHHHHSCCSSCEEEE
T ss_pred HHHHHHHHHhCCCCcEEEEcccccHHHHH--------HHHHcCCC--EEEeC------CCCHHHHHHHHHhcCCCCeEEE
Confidence 99999999999999999998876654321 23445653 34433 25899999988654 267777
Q ss_pred EcCCC--CCCCCCHHHHHHHHHHcCCEEEEeccccccccc-cCC-ccCCCC-CCcEEEEcCcCcCccCcEEEEEEeCCCC
Q 018300 257 AGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVA-ASV-VADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPV 331 (358)
Q Consensus 257 ~~~s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~-~g~-~~~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~~~ 331 (358)
+..++ +|...|+++|.++|+++|+++++|++|+.|... .+. .+..++ +.|++++|+||+++ |.||++++++
T Consensus 174 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~--- 249 (384)
T 1bs0_A 174 TEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG-VSGAAVLCSS--- 249 (384)
T ss_dssp EESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS-SCCEEEEECH---
T ss_pred EeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhh-ccCcEEEeCH---
Confidence 76554 456889999999999999999999999877532 111 112233 58999999999885 7889999976
Q ss_pred chhHHHHHHhh
Q 018300 332 LGVELESAINN 342 (358)
Q Consensus 332 ~~~~~~~~i~~ 342 (358)
++.+++..
T Consensus 250 ---~~~~~l~~ 257 (384)
T 1bs0_A 250 ---TVADYLLQ 257 (384)
T ss_dssp ---HHHHHHHH
T ss_pred ---HHHHHHHH
Confidence 55555544
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=168.76 Aligned_cols=202 Identities=13% Similarity=0.051 Sum_probs=142.2
Q ss_pred ccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceE-EeCCCHHHHHH
Q 018300 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNV-QPLSGSPANFE 183 (358)
Q Consensus 105 i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V-~~~SGt~A~~~ 183 (358)
+.+.+++..+++.|++++.+.+...| ....+.....+++++++++|.+++ .+| ++.+|++|+..
T Consensus 20 ~~~~~~p~~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~l~~~la~~~~~~~~---~~v~~~~g~t~al~~ 84 (396)
T 2ch1_A 20 IMMGPGPSNCSKRVLTAMTNTVLSNF------------HAELFRTMDEVKDGLRYIFQTENR---ATMCVSGSAHAGMEA 84 (396)
T ss_dssp BCCSSSSCCCCHHHHHHTTSCCCCTT------------CHHHHHHHHHHHHHHHHHHTCCCS---CEEEESSCHHHHHHH
T ss_pred eeecCCCCCCCHHHHHHhccccccCC------------ChhHHHHHHHHHHHHHHHhCCCCC---cEEEECCcHHHHHHH
Confidence 45556677789999999876543211 112223334467889999999863 134 44567789999
Q ss_pred HHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--
Q 018300 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-- 261 (358)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-- 261 (358)
++.++++|||+|+++++.|.++. + ...+...|.. ++.+++++ ++.+|++++++.+++.++++|++..++
T Consensus 85 ~~~~~~~~gd~vl~~~~~~~~~~---~---~~~~~~~g~~--~~~v~~~~-~~~~d~~~l~~~l~~~~~~~v~~~~~~np 155 (396)
T 2ch1_A 85 MLSNLLEEGDRVLIAVNGIWAER---A---VEMSERYGAD--VRTIEGPP-DRPFSLETLARAIELHQPKCLFLTHGDSS 155 (396)
T ss_dssp HHHHHCCTTCEEEEEESSHHHHH---H---HHHHHHTTCE--EEEEECCT-TSCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred HHHHhcCCCCeEEEEcCCcccHH---H---HHHHHHcCCc--eEEecCCC-CCCCCHHHHHHHHHhCCCCEEEEECCCCC
Confidence 99999999999999987655431 0 0122345654 44455553 567999999998875478988886554
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCCCCchhHHHH
Q 018300 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 338 (358)
Q Consensus 262 ~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~~~~~~~~~~ 338 (358)
+|...|+++|.++|+++|+++++|++|+.|.. +.++. ++|++++|+||++.||.| |++++++ ++.+
T Consensus 156 tG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~------~~~~ 224 (396)
T 2ch1_A 156 SGLLQPLEGVGQICHQHDCLLIVDAVASLCGV-----PFYMDKWEIDAVYTGAQKVLGAPPGITPISISP------KALD 224 (396)
T ss_dssp TTEECCCTTHHHHHHHTTCEEEEECTTTBTTB-----CCCTTTTTCCEEECCCC-CCCCCSSCEEEEECH------HHHH
T ss_pred CceecCHHHHHHHHHHcCCEEEEEccccccCC-----ccchhhcCcCEEEEcCCccccCCCCeEEEEECH------HHHH
Confidence 45678899999999999999999999986532 22333 679999999999988766 8888876 4555
Q ss_pred HHh
Q 018300 339 AIN 341 (358)
Q Consensus 339 ~i~ 341 (358)
++.
T Consensus 225 ~~~ 227 (396)
T 2ch1_A 225 VIR 227 (396)
T ss_dssp HHH
T ss_pred hhh
Confidence 554
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.7e-19 Score=167.64 Aligned_cols=192 Identities=14% Similarity=0.051 Sum_probs=138.2
Q ss_pred ccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHH
Q 018300 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (358)
Q Consensus 105 i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a 184 (358)
+.+.|++..+++.|++++...+... + +.... +....+++++++++|++++ ..+++++|++|+..+
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~~--------~---~~~~~-~~~~~l~~~la~~~g~~~~---~i~~~~g~t~a~~~~ 67 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLHH--------R---TEAAR-EVFLKARGLLREAFRTEGE---VLILTGSGTLAMEAL 67 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCCT--------T---SHHHH-HHHHHHHHHHHHHHTCSSE---EEEEESCHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhccCCCCc--------c---CHHHH-HHHHHHHHHHHHHhCCCCc---eEEEcCchHHHHHHH
Confidence 5677899999999999998765311 1 11222 2333467889999999753 234556778899999
Q ss_pred HHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--
Q 018300 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY-- 262 (358)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~-- 262 (358)
+.++++|||+|+++++.|.++. + ...+...|. +++.+++++ ++.+|++++++ .++++|++..+++
T Consensus 68 ~~~~~~~gd~vl~~~~~~~~~~---~---~~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~----~~~~~v~~~~~~npt 134 (352)
T 1iug_A 68 VKNLFAPGERVLVPVYGKFSER---F---YEIALEAGL--VVERLDYPY-GDTPRPEDVAK----EGYAGLLLVHSETST 134 (352)
T ss_dssp HHHHCCTTCEEEEEECSHHHHH---H---HHHHHHTTC--EEEEEECCT-TCCCCTTTSCC----SSCSEEEEESEETTT
T ss_pred HHhccCCCCeEEEEeCCchhHH---H---HHHHHHcCC--ceEEEeCCC-CCCCCHHHHhc----cCCcEEEEEEecCCc
Confidence 9999999999999887554432 1 011223465 444555553 46788888876 3688888766554
Q ss_pred CCCCCHHHHHHHHHHc--CCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 263 PRDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 263 ~~~~dl~~I~~ia~e~--g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
|...|+++|.++|+++ |+++++|++|+.|.. +.++. ++|++++|+||++.||.| |+++++++
T Consensus 135 G~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~ 201 (352)
T 1iug_A 135 GALADLPALARAFKEKNPEGLVGADMVTSLLVG-----EVALEAMGVDAAASGSQKGLMCPPGLGFVALSPR 201 (352)
T ss_dssp TEECCHHHHHHHHHHHCTTCEEEEECTTTBTTB-----CCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHH
T ss_pred ceecCHHHHHHHHHhhCCCCEEEEECCccccCc-----ceeccccCeeEEEecCcccccCCCceeEEEECHH
Confidence 5688999999999999 999999999986543 22233 689999999999988876 88888764
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-18 Score=166.89 Aligned_cols=220 Identities=16% Similarity=0.142 Sum_probs=151.8
Q ss_pred cccChHHHHHHHHHHHHhh----h--ccccc----------ccCCC----CcHHHHHHHhhhhhcccCCCCCCCcCCCCc
Q 018300 84 GEADPEVCEIITKEKERQF----K--SLELI----------ASENF----TSRAVMEAVGSCLTNKYSEGLPGKRYYGGN 143 (358)
Q Consensus 84 ~~~d~~~~~~i~~e~~~~~----~--~i~li----------as~n~----~s~~V~~al~~~l~~~~~~G~pg~r~~~G~ 143 (358)
+.++++++..+++.+.+.. + .+.+. .++++ .+|.|.+++...+. +|..++.+.+...|.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~-~~~~~~~~~~~~~g~ 102 (409)
T 3kki_A 24 PQLPDFIQNKIDHYIENYFDINKNGKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLL-EEQQSLFMSASFLQN 102 (409)
T ss_dssp CCCCHHHHHHHHHHHHHHTTTSTTSSCTTCCCCCCTTSEECCCSCTTCCTTCHHHHHHHHHHHH-SCCCCCCSBGGGGCS
T ss_pred ccchHHHHHHHHHHHHHHhhhccCCCeeeeCCCCCCceEEeeccCccCCcCCHHHHHHHHHHHH-HcCCCCCccccccCC
Confidence 6788899988876554421 1 12211 22332 48999999988765 343333333323232
Q ss_pred -HHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCc
Q 018300 144 -EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (358)
Q Consensus 144 -~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (358)
+..++ +++++++++|.+. .+++++|++|+..++.++++|||+|++.++.|+++.. .+...|.
T Consensus 103 ~~~~~~----l~~~la~~~g~~~-----~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~ 165 (409)
T 3kki_A 103 DYDKPM----IEKRLAKFTGFDE-----CLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWE--------GARYANA 165 (409)
T ss_dssp TTTSCH----HHHHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHH--------HHHHTTC
T ss_pred cHHHHH----HHHHHHHHhCCCe-----EEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHH--------HHHHcCC
Confidence 22223 4566888999875 3677999999999999999999999998876654321 2344555
Q ss_pred eEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEecccccccccc-CC-c
Q 018300 223 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV-V 298 (358)
Q Consensus 223 ~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~-~ 298 (358)
++++++ .+|+++|++.+.+.++++|++..+++ |...|+++|.++|+++|++|++|++|+.|.... +. .
T Consensus 166 --~~~~~~------~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~ 237 (409)
T 3kki_A 166 --QAHPFM------HNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGL 237 (409)
T ss_dssp --EEEEEC------TTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCH
T ss_pred --eEEEec------CCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcc
Confidence 344432 26899999998766689998876654 568899999999999999999999998664421 11 0
Q ss_pred --cCCCC-CCcEEEEcCcCcCccCcEEEEEEeCCC
Q 018300 299 --ADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDP 330 (358)
Q Consensus 299 --~~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~~ 330 (358)
...+. ..|+++.|++|+++++ ||+++++++.
T Consensus 238 ~~~~~~~~~~di~~~s~sK~~~~~-gg~v~~~~~~ 271 (409)
T 3kki_A 238 LAELGLTREVHFMTASLAKTFAYR-AGAIWCNNEV 271 (409)
T ss_dssp HHHHTCGGGCSEEEEESSSTTCSS-CEEEEESSSG
T ss_pred hhhcCCCCCCCEEEeecchhhCCC-ceEEEECHHH
Confidence 01122 5789999999999766 8999998863
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=166.02 Aligned_cols=206 Identities=16% Similarity=0.167 Sum_probs=142.7
Q ss_pred CCCcHHHHHHHhhhhhcccCCCCCCCc-CCCCcHHHHHHHHHHHHHHHHHcCC-CCCCCcceEEeCCCHHHHHHHHHHh-
Q 018300 112 NFTSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGSPANFEVYTAI- 188 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~~~G~pg~r-~~~G~~~~~~lE~~~~~~la~lfg~-~~~~~~v~V~~~SGt~A~~~a~~al- 188 (358)
...++.|++++...+.+.+ +++... +..+....... ..+++++++++|. +++ ..+++++||+|+..++.++
T Consensus 33 ~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~l~~~la~~~~~~~~~---~v~~~~g~t~a~~~~~~~~~ 106 (406)
T 1kmj_A 33 AQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQATEKM-ENVRKRASLFINARSAE---ELVFVRGTTEGINLVANSWG 106 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTC--CCCSSCSSHHHHHHHHHH-HHHHHHHHHHTTCSCGG---GEEEESSHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHhhc--CCCCCCcchHHHHHHHHH-HHHHHHHHHHcCCCCCC---eEEEeCChhHHHHHHHHHhh
Confidence 3678999999988776542 223210 11111122233 3467889999998 443 2344556678999999999
Q ss_pred ---ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--CC
Q 018300 189 ---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA--YP 263 (358)
Q Consensus 189 ---l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~--~~ 263 (358)
++|||+|+++++.|.+.... +. ..+...|. +++.+++++ ++.+|+++|++.+.. ++++|++..++ +|
T Consensus 107 ~~~~~~gd~vl~~~~~~~~~~~~-~~---~~~~~~g~--~~~~~~~~~-~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG 178 (406)
T 1kmj_A 107 NSNVRAGDNIIISQMEHHANIVP-WQ---MLCARVGA--ELRVIPLNP-DGTLQLETLPTLFDE-KTRLLAITHVSNVLG 178 (406)
T ss_dssp HHHCCTTCEEEEETTCCGGGTHH-HH---HHHHHHTC--EEEEECBCT-TSCBCGGGHHHHCCT-TEEEEEEESBCTTTC
T ss_pred hhcCCCCCEEEEecccchHHHHH-HH---HHHHhCCC--EEEEEecCC-CCCcCHHHHHHHhcc-CCeEEEEeCCCcccc
Confidence 89999999998877654321 10 11233455 444555653 567999999998864 78888876554 46
Q ss_pred CCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCCCCchhHHHHHH
Q 018300 264 RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI 340 (358)
Q Consensus 264 ~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~~~~~~~~~~~i 340 (358)
...|+++|.++|+++|+++++|++|+.|.. +..+. +.|++++|+||++ ||.| |++++++ ++.+++
T Consensus 179 ~~~~l~~i~~l~~~~~~~li~D~~~~~g~~-----~~~~~~~~~d~~~~s~~K~~-g~~G~G~~~~~~------~~~~~~ 246 (406)
T 1kmj_A 179 TENPLAEMITLAHQHGAKVLVDGAQAVMHH-----PVDVQALDCDFYVFSGHKLY-GPTGIGILYVKE------ALLQEM 246 (406)
T ss_dssp CBCCHHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECH------HHHHHC
T ss_pred CcCCHHHHHHHHHHcCCEEEEEchhhcCCC-----CCcccccCCCEEEEEchhcc-CCCCcEEEEEeH------HHHhhc
Confidence 788999999999999999999999986532 11222 7899999999987 7776 9999876 676666
Q ss_pred hhc
Q 018300 341 NNA 343 (358)
Q Consensus 341 ~~~ 343 (358)
...
T Consensus 247 ~~~ 249 (406)
T 1kmj_A 247 PPW 249 (406)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-18 Score=166.82 Aligned_cols=191 Identities=14% Similarity=0.132 Sum_probs=142.0
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-ccC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKP 191 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~p 191 (358)
..++.+++++...+.+.+ +..+ +...+ .++.+++++|.+. .++++||++|+..++.++ ++|
T Consensus 17 ~~~~~~~~a~~~~~~~~~--------~~~~-~~~~~----l~~~la~~~~~~~-----~~~~~~gt~al~~~~~~~~~~~ 78 (393)
T 1mdo_A 17 AMGAEELAAVKTVLDSGW--------ITTG-PKNQE----LEAAFCRLTGNQY-----AVAVSSATAGMHIALMALGIGE 78 (393)
T ss_dssp CCCHHHHHHHHHHHHHTC--------CSSS-HHHHH----HHHHHHHHHCCSE-----EEEESCHHHHHHHHHHHTTCCT
T ss_pred CCCHHHHHHHHHHHhcCC--------cCCC-hHHHH----HHHHHHHHhCCCc-----EEEecChHHHHHHHHHHcCCCC
Confidence 356888999887775432 1112 32333 4556888999864 366788999999999999 999
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHH
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRM 271 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I 271 (358)
||+|+++++.|.++.. .+...|. +++.++++++++.+|++++++.++. ++++|++.. .+|...|+++|
T Consensus 79 gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~-~~G~~~~~~~i 146 (393)
T 1mdo_A 79 GDEVITPSMTWVSTLN--------MIVLLGA--NPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPVH-YAGAPADLDAI 146 (393)
T ss_dssp TCEEEEESSSCHHHHH--------HHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCBC-GGGCCCCHHHH
T ss_pred CCEEEeCCCccHhHHH--------HHHHCCC--EEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEeC-CCCCcCCHHHH
Confidence 9999999887665421 2345565 4555667655568999999998864 688887753 46777899999
Q ss_pred HHHHHHcCCEEEEeccccccccccCCccCCCCC-CcEEEEcCc--CcCccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 272 RQIADAVGALLMMDMAHISGLVAASVVADPFKY-CDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 272 ~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~g-aDiv~~S~h--K~L~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
.++|+++|+++++|++|+.|....+. ++ + .|++++|+| |+|+|++||+++++++ ++.+++..
T Consensus 147 ~~l~~~~~~~li~D~a~~~g~~~~~~---~~-~~~d~~~~S~~k~K~l~~~~~g~~~~~~~-----~~~~~l~~ 211 (393)
T 1mdo_A 147 YALGERYGIPVIEDAAHATGTSYKGR---HI-GARGTAIFSFHAIKNITCAEGGIVVTDNP-----QFADKLRS 211 (393)
T ss_dssp HHHHHHHTCCBCEECTTCTTCEETTE---ET-TSSSEEEEECCTTSSSCSSSCEEEEESCH-----HHHHHHHH
T ss_pred HHHHHHcCCeEEEECccccCCeECCe---ec-CCCCeEEEeCCCCCccccccceEEEeCCH-----HHHHHHHH
Confidence 99999999999999999987654321 11 3 899999999 9998889999999754 56666654
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=171.50 Aligned_cols=168 Identities=14% Similarity=0.063 Sum_probs=124.9
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
+|.+.|+ +++..+++|+ ++++++|.+. .+.++||+.|+..++.++++|||+|++.++.|++......
T Consensus 73 ~~~y~r~--~~p~~~~le~----~lA~l~g~~~-----~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~-- 139 (415)
T 2fq6_A 73 ELFYGRR--GTLTHFSLQQ----AMCELEGGAG-----CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCS-- 139 (415)
T ss_dssp SCCCTTT--CCHHHHHHHH----HHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHH--
T ss_pred CccccCC--CCchHHHHHH----HHHHHhCCCe-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH--
Confidence 4544443 5565555554 5888999864 3667899999999999999999999999988876532100
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHH--cCCEEEEeccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADA--VGALLMMDMAH 288 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e--~g~~livD~Ah 288 (358)
..+...|. ++..++. .|++++++.+++ ++|+|++..+++ +...|+++|.++|++ +|+++++|++|
T Consensus 140 --~~l~~~G~--~v~~v~~------~d~~~le~ai~~-~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~ 208 (415)
T 2fq6_A 140 --KILSKLGV--TTSWFDP------LIGADIVKHLQP-NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTW 208 (415)
T ss_dssp --HTGGGGTC--EEEEECT------TCGGGGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTT
T ss_pred --HHHHHcCc--EEEEECC------CCHHHHHHhhcc-CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCC
Confidence 11223454 4444332 278999988864 689998876665 568999999999999 99999999999
Q ss_pred cccccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCC
Q 018300 289 ISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (358)
Q Consensus 289 ~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~ 329 (358)
+.+.. ..|++ ++|++++|+||+++|+. ||+++++++
T Consensus 209 a~~~~-----~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~ 248 (415)
T 2fq6_A 209 AAGVL-----FKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNAR 248 (415)
T ss_dssp TTTTS-----SCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTT
T ss_pred ccccc-----CCccccCCeEEEEeCccccCCCCCceEEEEEeCHH
Confidence 86532 23556 89999999999998764 799998875
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-18 Score=167.38 Aligned_cols=200 Identities=15% Similarity=0.187 Sum_probs=141.2
Q ss_pred ccCCCCcHHHHHHHhhhhh--cccCCCCCCC-cCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLT--NKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~--~~~~~G~pg~-r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~ 185 (358)
++...+++.|++++...+. +.+ ++|.. .+..+.. ..+..+.+++++++++|+++++ .+++++|++|+.+++
T Consensus 29 ~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~~~~~---v~~~~ggt~a~~~a~ 102 (423)
T 3lvm_A 29 SATTPVDPRVAEKMMQFMTMDGTF--GNPASRSHRFGWQ-AEEAVDIARNQIADLVGADPRE---IVFTSGATESDNLAI 102 (423)
T ss_dssp TTCCCCCHHHHHHHTTSSSTTSCC--SCTTCTTSHHHHH-HHHHHHHHHHHHHHHHTCCGGG---EEEESSHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHhhcccc--cCCCccccchhHH-HHHHHHHHHHHHHHHcCCCCCe---EEEeCChHHHHHHHH
Confidence 4555789999999988776 444 44443 2222222 2334445788899999998642 345567788999999
Q ss_pred HHhcc----CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC
Q 018300 186 TAILK----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (358)
Q Consensus 186 ~all~----pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~ 261 (358)
.++.+ |||+|+++++.|.++... ...+...|. +++.+++++ ++.+|+++|++.+++ ++++|++..++
T Consensus 103 ~~l~~~~~~~gd~Vl~~~~~~~~~~~~-----~~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~-~~~~v~~~~~~ 173 (423)
T 3lvm_A 103 KGAANFYQKKGKHIITSKTEHKAVLDT-----CRQLEREGF--EVTYLAPQR-NGIIDLKELEAAMRD-DTILVSIMHVN 173 (423)
T ss_dssp HHHHHHHTTTCCEEEEETTSCHHHHHH-----HHHHHHTTC--EEEEECCCT-TSCCCHHHHHHHCCT-TEEEEECCSBC
T ss_pred HHHHHhhccCCCEEEECCccchHHHHH-----HHHHHHcCC--EEEEeccCC-CCccCHHHHHHhcCC-CcEEEEEeCCC
Confidence 88874 899999998876654221 011123455 445555664 678999999999865 78888876544
Q ss_pred --CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCc-EEEEEEeCC
Q 018300 262 --YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPR-GGMIFFKKD 329 (358)
Q Consensus 262 --~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~-GG~I~~~~~ 329 (358)
+|...|+++|.++|+++|++|++|++|+.|.. +..+. ++|++++|+||++ ||. .|+++++++
T Consensus 174 nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~-----~~~~~~~~~di~~~s~sK~~-g~~g~G~~~~~~~ 240 (423)
T 3lvm_A 174 NEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKL-----PIDLSQLKVDLMSFSGHKIY-GPKGIGALYVRRK 240 (423)
T ss_dssp TTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTS-----CCCTTTSCCSEEEEESTTTT-SCSSCEEEEECBT
T ss_pred CCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCC-----CcChhhcCCCEEEechHHhc-CCCCeEEEEEecc
Confidence 46788999999999999999999999986543 22222 6899999999965 554 488888865
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-18 Score=162.98 Aligned_cols=199 Identities=16% Similarity=0.167 Sum_probs=140.2
Q ss_pred cCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc
Q 018300 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 189 (358)
Q Consensus 110 s~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all 189 (358)
+...+++.|++++...+.+.|. .+...+..+....+ .....++++++++|++++ ..+++.+|++|+..++.++.
T Consensus 9 ~~~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~l~~~la~~~g~~~~---~v~~~~g~t~a~~~~~~~~~ 82 (384)
T 1eg5_A 9 ATTRVDDRVLEEMIVFYREKYG--NPNSAHGMGIEANL-HMEKAREKVAKVLGVSPS---EIFFTSCATESINWILKTVA 82 (384)
T ss_dssp TCCCCCHHHHHHHHHHHHTCCC--CTTCSSHHHHHHHH-HHHHHHHHHHHHHTSCGG---GEEEESCHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHH-HHHHHHHHHHHHcCCCCC---eEEEECCHHHHHHHHHHhhh
Confidence 3447899999999988765442 23221211222222 333467889999998754 23455667889999999987
Q ss_pred ----cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--C
Q 018300 190 ----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--P 263 (358)
Q Consensus 190 ----~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~ 263 (358)
+|||+|+++++.|.++... ...+...|. +++.+++++ ++.+|+++|++.++. ++++|++..+++ |
T Consensus 83 ~~~~~~gd~vl~~~~~~~~~~~~-----~~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG 153 (384)
T 1eg5_A 83 ETFEKRKRTIITTPIEHKAVLET-----MKYLSMKGF--KVKYVPVDS-RGVVKLEELEKLVDE-DTFLVSIMAANNEVG 153 (384)
T ss_dssp HHTTTTCCEEEECTTSCHHHHHH-----HHHHHHTTC--EEEECCBCT-TSCBCHHHHHHHCCT-TEEEEEEESBCTTTC
T ss_pred hhccCCCCEEEECCCCchHHHHH-----HHHHHhcCC--EEEEEccCC-CCccCHHHHHHHhCC-CCeEEEEECCCCCcc
Confidence 7999999998766543211 111234465 455666663 578999999998864 788888765554 5
Q ss_pred CCCCHHHHHHHHHHcC--CEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 264 RDFDYPRMRQIADAVG--ALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 264 ~~~dl~~I~~ia~e~g--~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
...|+++|.++|+++| +++++|++|+.|.. +..+. ++|++++|+||+ .||.| |+++++++
T Consensus 154 ~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~-----~~~~~~~~~di~~~s~sK~-~g~~G~G~~~~~~~ 218 (384)
T 1eg5_A 154 TIQPVEDVTRIVKKKNKETLVHVDAVQTIGKI-----PFSLEKLEVDYASFSAHKF-HGPKGVGITYIRKG 218 (384)
T ss_dssp BBCCHHHHHHHHHHHCTTCEEEEECTTTTTTS-----CCCCTTTCCSEEEEEGGGG-TSCTTCEEEEECTT
T ss_pred cccCHHHHHHHHHhcCCceEEEEEhhhhcCCc-----ccCchhcCCCEEEecHHHh-cCCCceEEEEEcCC
Confidence 6889999999999999 99999999985532 22233 689999999997 56765 99999875
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.4e-18 Score=165.65 Aligned_cols=197 Identities=20% Similarity=0.216 Sum_probs=140.0
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCC-cHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G-~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pG 192 (358)
.++.|++++...+.. +..++.+.+|..| .+.. ...++++++++|++. .++++||+.|+..++.++++||
T Consensus 60 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~----~~l~~~la~~~g~~~-----~i~~~sGs~a~~~~~~~~~~~g 129 (401)
T 1fc4_A 60 NHPDLIAAAKAGMDS-HGFGMASVRFICGTQDSH----KELEQKLAAFLGMED-----AILYSSCFDANGGLFETLLGAE 129 (401)
T ss_dssp TCHHHHHHHHHHHHH-HCSCCCSCHHHHCCBHHH----HHHHHHHHHHHTCSE-----EEEESCHHHHHHTTHHHHCCTT
T ss_pred CCHHHHHHHHHHHHH-hCCCCCCCCcccCCcHHH----HHHHHHHHHHhCCCc-----EEEeCChHHHHHHHHHHHcCCC
Confidence 389999999887643 3334444344322 2322 235667889999873 4778999999999999999999
Q ss_pred CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc-----CCeEEEEcCCC--CCCC
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASA--YPRD 265 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~-----~~klIi~~~s~--~~~~ 265 (358)
|+|++.++.|+++.. .+...|. ++++++ .+|++++++.++.. ++++|++..++ +|..
T Consensus 130 d~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~ 193 (401)
T 1fc4_A 130 DAIISDALNHASIID--------GVRLCKA--KRYRYA------NNDMQELEARLKEAREAGARHVLIATDGVFSMDGVI 193 (401)
T ss_dssp CEEEEETTCCHHHHH--------HHHTSCS--EEEEEC------TTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEE
T ss_pred CEEEEcchhHHHHHH--------HHHHcCC--ceEEEC------CCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCC
Confidence 999998876654321 2345565 344432 35889999887642 68888886554 4567
Q ss_pred CCHHHHHHHHHHcCCEEEEeccccccccc-cCCc-c--CCCC-CCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHH
Q 018300 266 FDYPRMRQIADAVGALLMMDMAHISGLVA-ASVV-A--DPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAI 340 (358)
Q Consensus 266 ~dl~~I~~ia~e~g~~livD~Ah~~Gl~~-~g~~-~--~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i 340 (358)
.++++|.++|+++|+++++|++|+.|+.. .+.. + ..+. +.|++++|+||++.|+.||++++++ ++.+++
T Consensus 194 ~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~gG~~~~~~------~~~~~l 267 (401)
T 1fc4_A 194 ANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARK------EVVEWL 267 (401)
T ss_dssp CCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECH------HHHHHH
T ss_pred CCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCCEEEEcCH------HHHHHH
Confidence 89999999999999999999999878763 2221 1 1222 6799999999999666699999976 566665
Q ss_pred hh
Q 018300 341 NN 342 (358)
Q Consensus 341 ~~ 342 (358)
..
T Consensus 268 ~~ 269 (401)
T 1fc4_A 268 RQ 269 (401)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=164.85 Aligned_cols=195 Identities=15% Similarity=0.068 Sum_probs=137.9
Q ss_pred ccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEe-CCCHHHHHH
Q 018300 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGSPANFE 183 (358)
Q Consensus 105 i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~-~SGt~A~~~ 183 (358)
+.+.|++..+++.|++++.+.+.+. + +... .+....+++++++++|.+.+ . ..+.+ ++|++|+..
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~~~~~~--------~---~~~~-~~~~~~l~~~la~~~g~~~~-~-~~v~~t~g~t~a~~~ 67 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLRPMRGH--------L---DPEV-LRVNRAIQERLAALFDPGEG-A-LVAALAGSGSLGMEA 67 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGSCCCCT--------T---CHHH-HHHHHHHHHHHHHHHCCCTT-C-EEEEESSCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHhcccccc--------c---CHHH-HHHHHHHHHHHHHHhCCCCC-C-ceEEEcCCcHHHHHH
Confidence 4577889999999999997655321 1 1222 23444578889999998611 1 13444 566789999
Q ss_pred HHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC-
Q 018300 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY- 262 (358)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~- 262 (358)
++.++++ |+|+++++.|.++ .+ ...+...|..+ +.+++++ ++.+|++++++.+++.++++|++..+++
T Consensus 68 ~~~~~~~--d~vl~~~~~~~~~---~~---~~~~~~~g~~~--~~v~~~~-~~~~d~~~l~~~l~~~~~~~v~~~~~~np 136 (353)
T 2yrr_A 68 GLANLDR--GPVLVLVNGAFSQ---RV---AEMAALHGLDP--EVLDFPP-GEPVDPEAVARALKRRRYRMVALVHGETS 136 (353)
T ss_dssp HHHTCSC--CCEEEEECSHHHH---HH---HHHHHHTTCCE--EEEECCT-TSCCCHHHHHHHHHHSCCSEEEEESEETT
T ss_pred HHHHhcC--CcEEEEcCCCchH---HH---HHHHHHcCCce--EEEeCCC-CCCCCHHHHHHHHHhCCCCEEEEEccCCC
Confidence 9998876 8999887654432 11 01223456544 4445553 5679999999988754788888766554
Q ss_pred -CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 263 -PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 263 -~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
|...|+++|.++|+++|+++++|++|+.|.. +.++. ++|++++|+||++.||.| |+++++++
T Consensus 137 tG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~ 202 (353)
T 2yrr_A 137 TGVLNPAEAIGALAKEAGALFFLDAVTTLGML-----PFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLE 202 (353)
T ss_dssp TTEECCHHHHHHHHHHHTCEEEEECTTTTTTS-----CCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHH
T ss_pred cceecCHHHHHHHHHHcCCeEEEEcCcccccc-----cccccccCceEEEecCcccccCCCceEEEEECHH
Confidence 5678999999999999999999999975532 22333 689999999999988766 89998873
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-18 Score=165.58 Aligned_cols=205 Identities=19% Similarity=0.155 Sum_probs=141.2
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCC-cCCCCcHHHHHHHHHHHHHHHHHcCC-CCCCCcceEEeCCCHHHHHHHHHHh--
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGSPANFEVYTAI-- 188 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~-r~~~G~~~~~~lE~~~~~~la~lfg~-~~~~~~v~V~~~SGt~A~~~a~~al-- 188 (358)
..++.|++++...+.+.+ +++.. .+..+......++ .+++++++++|. +++ ..+++.+|+.|+..++.++
T Consensus 39 ~~~~~v~~a~~~~~~~~~--~~~~~~~~~y~~~~~~~~~-~l~~~la~~~~~~~~~---~v~~~~g~t~a~~~~~~~~~~ 112 (420)
T 1t3i_A 39 QKPRAVLEKLMHYYENDN--ANVHRGAHQLSVRATDAYE-AVRNKVAKFINARSPR---EIVYTRNATEAINLVAYSWGM 112 (420)
T ss_dssp CCCHHHHHHHHHHHHHTC--CCC--CCSHHHHHHHHHHH-HHHHHHHHHTTCSCGG---GEEEESSHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHhcc--CCCCcccchHHHHHHHHHH-HHHHHHHHHcCCCCCC---eEEEcCChHHHHHHHHHHhhh
Confidence 678999999988776532 22221 1111211123333 367789999998 443 2355667788999999999
Q ss_pred --ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--CCC
Q 018300 189 --LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA--YPR 264 (358)
Q Consensus 189 --l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~--~~~ 264 (358)
++|||+|+++++.|.++... +. ..+...|. +++.++++ +++.+|++++++.++. ++++|++..++ +|.
T Consensus 113 ~~~~~gd~Vl~~~~~~~~~~~~-~~---~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~ 184 (420)
T 1t3i_A 113 NNLKAGDEIITTVMEHHSNLVP-WQ---MVAAKTGA--VLKFVQLD-EQESFDLEHFKTLLSE-KTKLVTVVHISNTLGC 184 (420)
T ss_dssp HHCCTTCEEEEETTCCGGGTHH-HH---HHHHHHCC--EEEEECBC-TTSSBCHHHHHHHCCT-TEEEEEEESBCTTTCB
T ss_pred cccCCCCEEEECcchhHHHHHH-HH---HHHHhcCc--EEEEeccC-CCCCcCHHHHHHhhCC-CceEEEEeCCcccccC
Confidence 89999999998877664210 10 11223454 44555565 4567999999998864 78888876654 467
Q ss_pred CCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCCCCchhHHHHHHh
Q 018300 265 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 265 ~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~~~~~~~~~~~i~ 341 (358)
..|+++|.++|+++|+++++|++|+.|.. +..+. ++|++++|+||.+ ||.| |++++++ ++.+++.
T Consensus 185 ~~~l~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~sK~~-~~~g~G~~~~~~------~~~~~~~ 252 (420)
T 1t3i_A 185 VNPAEEIAQLAHQAGAKVLVDACQSAPHY-----PLDVQLIDCDWLVASGHKMC-APTGIGFLYGKE------EILEAMP 252 (420)
T ss_dssp BCCHHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECH------HHHHHSC
T ss_pred cCCHHHHHHHHHHcCCEEEEEhhhccCCc-----cCchhhcCCCEEEEehhhhc-CCCceEEEEEch------HHHhhcC
Confidence 88999999999999999999999987643 11222 7899999999954 5554 8888876 6767665
Q ss_pred hc
Q 018300 342 NA 343 (358)
Q Consensus 342 ~~ 343 (358)
..
T Consensus 253 ~~ 254 (420)
T 1t3i_A 253 PF 254 (420)
T ss_dssp CC
T ss_pred ce
Confidence 54
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=167.57 Aligned_cols=201 Identities=13% Similarity=0.073 Sum_probs=138.6
Q ss_pred hcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCC-CCcceEEeCCCHHHH
Q 018300 103 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSGSPAN 181 (358)
Q Consensus 103 ~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~-~~~v~V~~~SGt~A~ 181 (358)
+.+.+.|++..+++.|++++...+.+. + .....+.++ ..+++++++++.... +....+++++|++|+
T Consensus 5 ~~~~~~p~p~~~~~~v~~a~~~~~~~~---~--------~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al 72 (385)
T 2bkw_A 5 VDTLLIPGPIILSGAVQKALDVPSLGH---T--------SPEFVSIFQ-RVLKNTRAVFKSAAASKSQPFVLAGSGTLGW 72 (385)
T ss_dssp CCEECSSSSCCCCHHHHHTTSCCCCCT---T--------SHHHHHHHH-HHHHHHHHHTTCCGGGTCEEEEEESCTTHHH
T ss_pred cceeecCCCcCchHHHHHHHhcccccc---C--------CHHHHHHHH-HHHHHHHHHhCCCCCCCCceEEEcCchHHHH
Confidence 446778888999999999987543321 1 112222233 356778888876410 011235566788999
Q ss_pred HHHHHHhc---cCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee-cCCCCCCCHHHHHHHhhhcCCeEEEE
Q 018300 182 FEVYTAIL---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAILFRPKLIIA 257 (358)
Q Consensus 182 ~~a~~all---~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~iD~d~le~~i~~~~~klIi~ 257 (358)
..++.++. +|||+|++++..+.+ ... ...+...|. +++.+++ + +++.+|+++|++.+++.++++|++
T Consensus 73 ~~~~~~~~~~~~~gd~vlv~~~~~~~----~~~--~~~~~~~g~--~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~~v~~ 143 (385)
T 2bkw_A 73 DIFASNFILSKAPNKNVLVVSTGTFS----DRF--ADCLRSYGA--QVDVVRPLK-IGESVPLELITEKLSQNSYGAVTV 143 (385)
T ss_dssp HHHHHHHSCTTCSCCEEEEECSSHHH----HHH--HHHHHHTTC--EEEEECCSS-TTSCCCHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHhccCCCCCeEEEEcCCcch----HHH--HHHHHHcCC--ceEEEecCC-CCCCCCHHHHHHHHhcCCCCEEEE
Confidence 99999987 899999887432111 110 012334565 4445555 4 457899999999887547898887
Q ss_pred cCCC--CCCCCCHHHHHHHHHHc--CCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 258 GASA--YPRDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 258 ~~s~--~~~~~dl~~I~~ia~e~--g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
..++ +|...|+++|.++|+++ |+++++|++|+.|.. +.++. ++|++++|+||++.||.| |+++++++
T Consensus 144 ~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~ 217 (385)
T 2bkw_A 144 THVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCE-----EFEFDEWGVDFALTASQKAIGAPAGLSISLCSSR 217 (385)
T ss_dssp ESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTS-----CCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHH
T ss_pred EccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCc-----cccccccCceEEEecCccccccCCcceEEEEcHH
Confidence 6544 45688999999999999 999999999986543 22233 689999999999988877 89888774
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=167.54 Aligned_cols=195 Identities=17% Similarity=0.180 Sum_probs=130.5
Q ss_pred cccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHH
Q 018300 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (358)
Q Consensus 104 ~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~ 183 (358)
+..+.+++++..+.+.+++.. +.+. ..+|...|+ +++..+++ ++++++++|.+. .++++||++|+..
T Consensus 29 ~~p~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~r~--~~~~~~~l----~~~la~~~g~~~-----~i~~~sG~~a~~~ 95 (398)
T 1gc0_A 29 VPPVYQTATFTFPTVEYGAAC-FAGE-QAGHFYSRI--SNPTLNLL----EARMASLEGGEA-----GLALASGMGAITS 95 (398)
T ss_dssp SCCBCCCSCBCCC-------------------------CCHHHHHH----HHHHHHHHTCSE-----EEEESSHHHHHHH
T ss_pred CCCccCCCccccCCHHHHHHh-hcCC-cCCCcccCC--CChHHHHH----HHHHHHHhCCCc-----EEEECCHHHHHHH
Confidence 445557788888888877752 2222 223444333 44544444 456888999873 4778999999999
Q ss_pred HHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC-
Q 018300 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY- 262 (358)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~- 262 (358)
++.+++++||+|+++++.|+++..... ......|. ++..++. .|++++++.+++ ++++|++..+++
T Consensus 96 ~l~~~~~~gd~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~~~~------~d~~~l~~~i~~-~~~~v~~~~~~np 162 (398)
T 1gc0_A 96 TLWTLLRPGDEVLLGNTLYGCTFAFLH----HGIGEFGV--KLRHVDM------ADLQALEAAMTP-ATRVIYFESPANP 162 (398)
T ss_dssp HHHHHCCTTCEEEEESSCCSHHHHHHH----HTGGGGTC--EEEEECT------TCHHHHHHHCCT-TEEEEEEESSCTT
T ss_pred HHHHHhcCCCEEEEeCCCchhHHHHHH----HHHHHcCC--EEEEECC------CCHHHHHHhcCC-CCeEEEEECCCCC
Confidence 999999999999999988776532110 00123454 3444332 389999998864 789988876654
Q ss_pred -CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCC
Q 018300 263 -PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (358)
Q Consensus 263 -~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~ 329 (358)
|...|+++|.++|+++|+++++|++|+.+... .++. ++|++++|+||+++||. ||+++++++
T Consensus 163 tG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~-----~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~ 229 (398)
T 1gc0_A 163 NMHMADIAGVAKIARKHGATVVVDNTYCTPYLQ-----RPLELGADLVVHSATKYLSGHGDITAGIVVGSQA 229 (398)
T ss_dssp TCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHC-----CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHH
T ss_pred CcccccHHHHHHHHHHcCCEEEEECCCcccccC-----CchhhCceEEEECCccccCCCCCCeEEEEEEChH
Confidence 56889999999999999999999999876542 3445 79999999999998775 699988874
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-17 Score=160.66 Aligned_cols=237 Identities=11% Similarity=-0.003 Sum_probs=155.1
Q ss_pred cccccccChHHHHHHHHHHHHhhhcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHH
Q 018300 80 DYSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (358)
Q Consensus 80 ~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~l 157 (358)
++++..+++..+..+.+...+...-+++...++ ..++.+.+++...+.... .+|+. ..|. .++++.+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~---~~g~---~~l~~~la~~~ 76 (389)
T 1gd9_A 4 SDRLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGL-THYGP---NIGL---LELREAIAEKL 76 (389)
T ss_dssp HHHHHHSCCCHHHHHHHHHHTCSSCEECCCCSCSSCCCHHHHHHHHHHHHTTC-CSCCC---TTCC---HHHHHHHHHHH
T ss_pred hhHhHhCChhHHHHHHHHHhhhcCeEecCCCCCCCCCCHHHHHHHHHHHhCCC-CCCCC---CCCc---HHHHHHHHHHH
Confidence 345555666555444444333334556654444 358899999988775421 23332 1122 35777777777
Q ss_pred HHHcCC--CCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-
Q 018300 158 LAAFNL--DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES- 234 (358)
Q Consensus 158 a~lfg~--~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~- 234 (358)
.+.+|. ++++ ..+++++|++|+..++.++++|||+|++.++.|.++.. .+...|.. ++.++++++
T Consensus 77 ~~~~g~~~~~~~--~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~--~~~v~~~~~~ 144 (389)
T 1gd9_A 77 KKQNGIEADPKT--EIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAP--------AVILAGGK--PVEVPTYEED 144 (389)
T ss_dssp HHHHCCCCCTTT--SEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHH--------HHHHHTCE--EEEEECCGGG
T ss_pred HHHhCCCCCCCC--eEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHCCCE--EEEeccCCcc
Confidence 777785 4431 03556677899999999999999999999887765421 23345654 444445532
Q ss_pred CCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCC---CHHHHHHHHHHcCCEEEEeccccccccccCC-ccC--CC---C
Q 018300 235 TGLVDYDMLEKTAILFRPKLIIAGASAY--PRDF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VAD--PF---K 303 (358)
Q Consensus 235 ~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~~--pl---~ 303 (358)
+..+|++++++.++. ++++|++..+++ |... ++++|.++|+++|+++++|++|+.+.. .+. .+. .+ .
T Consensus 145 ~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~ 222 (389)
T 1gd9_A 145 EFRLNVDELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIY-DDARHYSIASLDGMF 222 (389)
T ss_dssp TTCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBC-TTCCCCCGGGSTTCG
T ss_pred CCCCCHHHHHHhcCc-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhccc-CCCCCCCHhhccCCC
Confidence 346899999998864 688887765554 4455 589999999999999999999985433 222 111 12 1
Q ss_pred CCcEEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 304 YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 304 gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
+.|+++.|+||++ +|.|.|++++++ ++.+++...
T Consensus 223 ~~~i~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~~ 258 (389)
T 1gd9_A 223 ERTITVNGFSKTFAMTGWRLGFVAAPS------WIIERMVKF 258 (389)
T ss_dssp GGEEEEEESTTTTTCGGGCCEEEECCH------HHHHHHHHH
T ss_pred CCEEEEecChhhcCCcccceEEEEECH------HHHHHHHHH
Confidence 4689999999997 355679999876 566666543
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=169.12 Aligned_cols=222 Identities=15% Similarity=0.061 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHhh-hccccccc--CCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCC-
Q 018300 89 EVCEIITKEKERQF-KSLELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD- 164 (358)
Q Consensus 89 ~~~~~i~~e~~~~~-~~i~lias--~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~- 164 (358)
++++.++++..... ..+++ ++ ..++++.+.+++.+.+...+. ++ ...+...++|+.+++++++++|++
T Consensus 41 ~~~~~~~~~i~l~gnp~~~l-~s~~t~~~~~~v~~~l~~~~~~~~~--~~-----~~~p~~~~le~~~~~~la~l~g~~~ 112 (502)
T 3hbx_A 41 AAYQIINDELMLDGNPRLNL-ASFVTTWMEPECDKLIMSSINKNYV--DM-----DEYPVTTELQNRCVNMIAHLFNAPL 112 (502)
T ss_dssp HHHHHHHHHGGGSCCGGGBT-TCCSCCCCCHHHHHHHHHTTTCBTT--CT-----TTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhccCCCCCcee-ccccCCCCCHHHHHHHHHHhccCCC--Ch-----hcChhHHHHHHHHHHHHHHHhCCCc
Confidence 45666655543221 12222 22 356799999999887654331 11 223446789999999999999998
Q ss_pred -CCCCcceEEeCCCHHHHHHHHHHhccC--------CC-----EEEecCCCCCcccccccccchhccccCCceEEEEece
Q 018300 165 -ENKWGVNVQPLSGSPANFEVYTAILKP--------HD-----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (358)
Q Consensus 165 -~~~~~v~V~~~SGt~A~~~a~~all~p--------GD-----~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~ 230 (358)
+++....+.+++|++||+.++.++.++ || +|+++++.|.+ +. +.+...|..+ ..++
T Consensus 113 ~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s---~~-----~~~~~~G~~~--~~v~ 182 (502)
T 3hbx_A 113 EEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVC---WE-----KFARYFEVEL--KEVK 182 (502)
T ss_dssp CSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHH---HH-----HHHHHTTCEE--EEEC
T ss_pred ccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHH---HH-----HHHHHcCcee--EEEe
Confidence 433323345678889999998887655 87 89988764433 21 2344567644 4455
Q ss_pred ecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--CCCCCCHHHHHHHHHHc------CCEEEEecccccccc--ccCCccC
Q 018300 231 LDESTGLVDYDMLEKTAILFRPKLIIAGASA--YPRDFDYPRMRQIADAV------GALLMMDMAHISGLV--AASVVAD 300 (358)
Q Consensus 231 ~~~~~~~iD~d~le~~i~~~~~klIi~~~s~--~~~~~dl~~I~~ia~e~------g~~livD~Ah~~Gl~--~~g~~~~ 300 (358)
++++++.+|+++|++.+.+ ++++|++..++ +|...|+++|.++|+++ |+++++|+||+.+.. ..+..+.
T Consensus 183 ~~~~~~~~d~~~l~~~i~~-~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~ 261 (502)
T 3hbx_A 183 LSEGYYVMDPQQAVDMVDE-NTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEW 261 (502)
T ss_dssp CBTTBCSCCHHHHHHHCCT-TEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC
T ss_pred cCCCcCcCCHHHHHHHHhh-CCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccccc
Confidence 6655589999999999875 67877664433 56788999999999999 999999999985432 1222222
Q ss_pred CC--CCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 301 PF--KYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 301 pl--~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
.+ .++|++++++||++.+|.| |+++++++
T Consensus 262 ~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~ 293 (502)
T 3hbx_A 262 DFRLPLVKSINVSGHKYGLVYAGIGWVIWRNK 293 (502)
T ss_dssp STTSTTEEEEEEETTTTTCCCSSCEEEEESSG
T ss_pred ccCCCCceEEEECcccccCCCCCeEEEEEeCH
Confidence 23 2899999999999977765 87777654
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=166.41 Aligned_cols=198 Identities=16% Similarity=0.093 Sum_probs=135.0
Q ss_pred cccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHH
Q 018300 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (358)
Q Consensus 104 ~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~ 183 (358)
.+++.+++..+++.|++++.+.+ ++ ++ ..+.......+++++++++|. +.++...+++.+|++|+..
T Consensus 5 ~~~~~~gp~~~~~~v~~a~~~~~------~~---~~---~~~~~~~~~~l~~~la~~~g~-~~~~~~v~~~~g~t~a~~~ 71 (366)
T 1m32_A 5 YLLLTPGPLTTSRTVKEAMLFDS------CT---WD---DDYNIGVVEQIRQQLTALATA-SEGYTSVLLQGSGSYAVEA 71 (366)
T ss_dssp CEECSSSSCCCCHHHHHTTCCCC------CT---TS---HHHHTTTHHHHHHHHHHHHCS-SSSEEEEEEESCHHHHHHH
T ss_pred cccccCCCcCCCHHHHHHHhhhh------cC---CC---HHHHHHHHHHHHHHHHHHhCC-CCcCcEEEEecChHHHHHH
Confidence 35666777778999999987632 11 11 111101222356778999993 3211123556678889999
Q ss_pred HHHHhccCCCEEEecC-CCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc-CCeEEEEcCCC
Q 018300 184 VYTAILKPHDRIMGLD-LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGASA 261 (358)
Q Consensus 184 a~~all~pGD~Vl~~~-~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~-~~klIi~~~s~ 261 (358)
++.+++++||+|++.+ +.|++.+. ..+...|..+ ..++++ +++.+|+++|++.+++. ++++|++..++
T Consensus 72 ~~~~~~~~gd~vi~~~~~~~~~~~~-------~~~~~~g~~~--~~v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~ 141 (366)
T 1m32_A 72 VLGSALGPQDKVLIVSNGAYGARMV-------EMAGLMGIAH--HAYDCG-EVARPDVQAIDAILNADPTISHIAMVHSE 141 (366)
T ss_dssp HHHHSCCTTCCEEEEESSHHHHHHH-------HHHHHHTCCE--EEEECC-TTSCCCHHHHHHHHHHCTTCCEEEEESEE
T ss_pred HHHHhcCCCCeEEEEeCCCccHHHH-------HHHHHhCCce--EEEeCC-CCCCCCHHHHHHHHhcCCCeEEEEEeccc
Confidence 9999999999988764 33322110 1223345543 444455 35679999999998764 57887665444
Q ss_pred C--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 262 Y--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 262 ~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+ |...|+++|.++|+++|+++++|++|+.|.. +..+. ++|++++|+||++.||.| |+++++++
T Consensus 142 nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~-----~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~ 209 (366)
T 1m32_A 142 TTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGI-----PMDIAALHIDYLISSANKCIQGVPGFAFVIAREQ 209 (366)
T ss_dssp TTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS-----CCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHH
T ss_pred CCcceecCHHHHHHHHHHcCCEEEEECCccccCc-----CccccccCccEEEecCcccccCCCceEEEEECHH
Confidence 4 6788999999999999999999999986643 22233 689999999999988877 99999873
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=168.58 Aligned_cols=199 Identities=15% Similarity=0.141 Sum_probs=140.7
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al 188 (358)
++...+++.|++++...+.+.+ ++++..|..+.. ..++.+.+++++++++|++++ ..+++++|++|+..++.++
T Consensus 27 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~~~~---~v~~~~g~t~al~~~~~~l 100 (400)
T 3vax_A 27 AATTRVDQRVADIVLHWMTAEF--GNAGSRHEYGIR-AKRGVERAREYLASTVSAEPD---ELIFTSGATESNNIALLGL 100 (400)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHH--SCSSCHHHHHHH-HHHHHHHHHHHHHHHTTCCGG---GEEEESCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHhcc--CCCcccchhHHH-HHHHHHHHHHHHHHHcCCCCC---cEEEeCCHHHHHHHHHHHH
Confidence 4556789999999988876544 334332222222 233444578889999999864 2345556678999999998
Q ss_pred c----cCCC-EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--
Q 018300 189 L----KPHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-- 261 (358)
Q Consensus 189 l----~pGD-~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-- 261 (358)
+ +||| +|+++++.|.++.... ..+...|. ++..+++++ ++.+|+++|++.+++ ++++|++..++
T Consensus 101 ~~~~~~~gd~~Vl~~~~~~~~~~~~~-----~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~-~~~~v~~~~~~np 171 (400)
T 3vax_A 101 APYGERTGRRHIITSAIEHKAVLEPL-----EHLAGRGF--EVDFLTPGP-SGRISVEGVMERLRP-DTLLVSLMHVNNE 171 (400)
T ss_dssp HHHHHHHTCCEEEEETTSCHHHHHHH-----HHHHTTTC--EEEEECCCT-TCCCCHHHHHTTCCT-TEEEEECCSBCTT
T ss_pred HHhhccCCCCEEEECccccHhHHHHH-----HHHHhcCC--eEEEEccCC-CCCcCHHHHHHhcCC-CceEEEEECCCCC
Confidence 7 8999 9999887665543211 11223455 455555664 678999999998864 68888886655
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCC-CcEEEEcCcCcCccCcE-EEEE-EeC
Q 018300 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY-CDVVTTTTHKSLRGPRG-GMIF-FKK 328 (358)
Q Consensus 262 ~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~g-aDiv~~S~hK~L~Gp~G-G~I~-~~~ 328 (358)
+|...|+++|.++|+++|+++++|++|+.|... ..+.. +|++++|+|| +.||.| |+++ .++
T Consensus 172 tG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-----~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~ 235 (400)
T 3vax_A 172 TGVIQPVAELAQQLRATPTYLHVDAAQGYGKVP-----GDLTTPIDMISISGHK-IGAPKGVGALVTRRR 235 (400)
T ss_dssp TCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSG-----GGGGSCCSEEEEETGG-GTSCSSCEEEEECBC
T ss_pred ceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCC-----cChhhcCcEEEEeHHH-hCCCCceEEEEEecc
Confidence 456889999999999999999999999866432 11222 8999999999 566764 7777 766
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-18 Score=167.61 Aligned_cols=202 Identities=20% Similarity=0.173 Sum_probs=144.7
Q ss_pred cccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHH
Q 018300 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (358)
Q Consensus 104 ~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~ 183 (358)
-+++..+++..++.|++++...+... . |..+ +...+ .++.+++++|.+. .+++++|+.|+..
T Consensus 32 ~id~~~~~~~~~~~v~~a~~~~~~~~---~-----y~~~-~~~~~----l~~~la~~~~~~~-----~v~~~~Gt~a~~~ 93 (399)
T 2oga_A 32 FLDLKAAYEELRAETDAAIARVLDSG---R-----YLLG-PELEG----FEAEFAAYCETDH-----AVGVNSGMDALQL 93 (399)
T ss_dssp SCCHHHHHHHTHHHHHHHHHHHHHHT---C-----CSSS-HHHHH----HHHHHHHHTTSSE-----EEEESCHHHHHHH
T ss_pred ccccCcCCCCCCHHHHHHHHHHHhcC---C-----CCCc-hhHHH----HHHHHHHHHCCCe-----EEEecCHHHHHHH
Confidence 34555555555688999998776531 1 2222 32333 4556889999873 4678899999999
Q ss_pred HHHHh-ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC
Q 018300 184 VYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262 (358)
Q Consensus 184 a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~ 262 (358)
++.++ ++|||+|+++++.|.++.. .+...|. ++..++++++++.+|++++++.++. ++++|+++. .+
T Consensus 94 ~l~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~n-~t 161 (399)
T 2oga_A 94 ALRGLGIGPGDEVIVPSHTYIASWL--------AVSATGA--TPVPVEPHEDHPTLDPLLVEKAITP-RTRALLPVH-LY 161 (399)
T ss_dssp HHHHTTCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCSSSSSBCHHHHHHHCCT-TEEEECCBC-GG
T ss_pred HHHHhCCCCcCEEEECCCccHHHHH--------HHHHCCC--EEEEEecCCCCCCcCHHHHHHhcCC-CCeEEEEeC-Cc
Confidence 99999 9999999999886655321 2345565 4455556654578999999998864 678887643 36
Q ss_pred CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCc--CcCccC-cEEEEEEeCCCCchhHHHH
Q 018300 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTH--KSLRGP-RGGMIFFKKDPVLGVELES 338 (358)
Q Consensus 263 ~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~h--K~L~Gp-~GG~I~~~~~~~~~~~~~~ 338 (358)
|...|+++|.++|+++|+++++|++|+.|....+. ++. ..|++++|+| |++++| +||+++++++ ++.+
T Consensus 162 G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~---~~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~-----~~~~ 233 (399)
T 2oga_A 162 GHPADMDALRELADRHGLHIVEDAAQAHGARYRGR---RIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDP-----ELAE 233 (399)
T ss_dssp GCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTE---ETTCTTCEEEEECCTTSSSCCSSCCEEEEESCH-----HHHH
T ss_pred CCccCHHHHHHHHHHcCCEEEEECcccccCccCCe---ecccccCEEEEeCCCCccCCcCCceEEEEeCCH-----HHHH
Confidence 77889999999999999999999999877543221 222 4699999995 998653 8899998754 6666
Q ss_pred HHhhc
Q 018300 339 AINNA 343 (358)
Q Consensus 339 ~i~~~ 343 (358)
++...
T Consensus 234 ~l~~~ 238 (399)
T 2oga_A 234 RLRML 238 (399)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=165.49 Aligned_cols=190 Identities=18% Similarity=0.200 Sum_probs=138.9
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCc-HHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~-~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pG 192 (358)
.++.|++++...+.. +..++++.++..|. +...+ .++++++++|.+. .++++||+.|+..++.+++++|
T Consensus 79 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~G~~~~~~~----l~~~la~~~g~~~-----~i~~~sGs~a~~~al~~l~~~g 148 (427)
T 2w8t_A 79 FDPDVIAAGKEALEK-FGSGTCGSRMLNGTFHDHME----VEQALRDFYGTTG-----AIVFSTGYMANLGIISTLAGKG 148 (427)
T ss_dssp GCHHHHHHHHHHHHH-HCSCCCSCTTTTCCCHHHHH----HHHHHHHHHTCSE-----EEEESCHHHHHHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHHH-hCCCCcccccccCCcHHHHH----HHHHHHHHhCCCc-----eEEecCcHHHHHHHHHHhcCCC
Confidence 679999999887754 33456665555554 43333 4566888999863 4778999999999999999999
Q ss_pred CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc---CCeEEEEcCCC--CCCCCC
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIAGASA--YPRDFD 267 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~---~~klIi~~~s~--~~~~~d 267 (358)
|+|++..+.|+++.. .+...|. +++.++ .+|+++|++.++.. ++++|++...+ .|...|
T Consensus 149 d~vl~~~~~h~~~~~--------~~~~~g~--~~~~~~------~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~ 212 (427)
T 2w8t_A 149 EYVILDADSHASIYD--------GCQQGNA--EIVRFR------HNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP 212 (427)
T ss_dssp CEEEEETTCCHHHHH--------HHHHSCS--EEEEEC------TTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC
T ss_pred CEEEECCcccHHHHH--------HHHHcCC--eeEEeC------CCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC
Confidence 999998876655321 2344565 344433 36899999988753 67888886544 466789
Q ss_pred HHHHHHHHHHcCCEEEEecccccccccc-CC-cc--CCCC-CCcEEEEcCcCcCccCcEEEEEEeCCC
Q 018300 268 YPRMRQIADAVGALLMMDMAHISGLVAA-SV-VA--DPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDP 330 (358)
Q Consensus 268 l~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~-~~--~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~~ 330 (358)
+++|.++|+++|++|++|++|+.|.... +. .. ..+. ++|++++|+||+|+ +.||+++++++.
T Consensus 213 l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g-~~gG~v~~~~~l 279 (427)
T 2w8t_A 213 LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG-TVGGFVVSNHPK 279 (427)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC-SCCEEEEECCTT
T ss_pred HHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc-cCCCEEEeCHHH
Confidence 9999999999999999999999765531 11 11 1122 67999999999985 788999998753
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-18 Score=162.00 Aligned_cols=195 Identities=14% Similarity=0.123 Sum_probs=134.3
Q ss_pred cCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-
Q 018300 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI- 188 (358)
Q Consensus 110 s~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al- 188 (358)
+...+++.|++++.+.+.+.+ .+| + +...+ +++.+++++|.+. .++++||+.|+..++.++
T Consensus 7 ~~~~~~~~v~~a~~~~~~~~~--~~~------~-~~~~~----l~~~la~~~~~~~-----v~~~~ggt~al~~~~~~~~ 68 (375)
T 2fnu_A 7 SEPCLDKEDKKAVLEVLNSKQ--LTQ------G-KRSLL----FEEALCEFLGVKH-----ALVFNSATSALLTLYRNFS 68 (375)
T ss_dssp CCCCCCHHHHHHHHHHHTSSC--CSS------S-HHHHH----HHHHHHHHHTCSE-----EEEESCHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHcCc--ccC------C-hHHHH----HHHHHHHHhCCCe-----EEEeCCHHHHHHHHHHHhc
Confidence 456789999999988775432 122 2 22223 4566889999873 356778899999999999
Q ss_pred --ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCC
Q 018300 189 --LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 266 (358)
Q Consensus 189 --l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~ 266 (358)
++|||+|+++++.|.++.. .+...|. +++.++++++ +.+|++++++.+++ ++++|++..+ +|...
T Consensus 69 ~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~-~~~d~~~l~~~i~~-~~~~v~~~~~-tG~~~ 135 (375)
T 2fnu_A 69 EFSADRNEIITTPISFVATAN--------MLLESGY--TPVFAGIKND-GNIDELALEKLINE-RTKAIVSVDY-AGKSV 135 (375)
T ss_dssp CCCTTSCEEEECSSSCTHHHH--------HHHHTTC--EEEECCBCTT-SSBCGGGSGGGCCT-TEEEEEEECG-GGCCC
T ss_pred ccCCCCCEEEECCCccHhHHH--------HHHHCCC--EEEEeccCCC-CCCCHHHHHhhcCc-CceEEEEeCC-cCCcc
Confidence 8999999999887665432 2334565 5566667654 48999999988764 6787666544 78889
Q ss_pred CHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEE--EEcCcCcCccCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVV--TTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 267 dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv--~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
|+++|.++|+++|+++++|++|+.|....+ ..+. ..|++ ++|.||++++.-||+++.+++ ++.+++...
T Consensus 136 ~l~~i~~l~~~~~~~li~D~a~~~~~~~~~---~~~~~~~~i~~~s~s~~K~~~~g~g~~~~~~~~-----~~~~~~~~~ 207 (375)
T 2fnu_A 136 EVESVQKLCKKHSLSFLSDSSHALGSEYQN---KKVGGFALASVFSFHAIKPITTAEGGAVVTNDS-----ELHEKMKLF 207 (375)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTCTTCEETT---EETTSSSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEEECccccCCeECC---eeccccCCeEEEeCCCCCCccccCceEEEeCCH-----HHHHHHHHH
Confidence 999999999999999999999987754322 1122 22555 555569984323344444444 566666553
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-18 Score=168.21 Aligned_cols=205 Identities=15% Similarity=0.162 Sum_probs=131.2
Q ss_pred cCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc
Q 018300 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 189 (358)
Q Consensus 110 s~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all 189 (358)
+...+++.|++++...+.+. .+||...|..+... .++.+.+++++++++|+++++ .+++++|++|+..++.+++
T Consensus 26 ~~~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~~---v~~~~g~t~a~~~~~~~~~ 99 (432)
T 3a9z_A 26 ATTPLEPEVIQAVTEAMKEA--WGNPSSSYVAGRKA-KDIINTARASLAKMIGGKPQD---IIFTSGGTESNNLVIHSTV 99 (432)
T ss_dssp TCCCCCHHHHHHHHHHHHHC--CSCTTCSSHHHHHH-HHHHHHHHHHHHHHHTCCGGG---EEEESCHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHh--cCCCccCcHHHHHH-HHHHHHHHHHHHHHcCCCcCe---EEEeCChHHHHHHHHHHHH
Confidence 34478999999998887653 35665444333222 233445788899999997541 2444455789999998875
Q ss_pred --------cCCCEEEecCCCCCccc-------cccccc-chhc-cccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCC
Q 018300 190 --------KPHDRIMGLDLPHGGHL-------SHGFMT-PKRR-VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRP 252 (358)
Q Consensus 190 --------~pGD~Vl~~~~~~ggh~-------s~~~~~-~~~~-~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~ 252 (358)
+|||+|++.++.+.++. .|.... .+.. ....|. +++.++++++++.+|+++|++.++. ++
T Consensus 100 ~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~--~v~~v~~~~~~~~~d~~~l~~~i~~-~~ 176 (432)
T 3a9z_A 100 RCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVA--EVTFVPVSKVNGQVEVEDILAAVRP-TT 176 (432)
T ss_dssp HHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSC--EEEEECCCTTTSSCCHHHHHHTCCT-TE
T ss_pred hhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCc--EEEEEecCcccCCcCHHHHHHhccC-Cc
Confidence 59999988887665431 011000 0001 122355 4455556544678999999998864 68
Q ss_pred eEEEEcCCCC--CCCCCHHHHHHHHHHcC----------CEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCcc
Q 018300 253 KLIIAGASAY--PRDFDYPRMRQIADAVG----------ALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRG 318 (358)
Q Consensus 253 klIi~~~s~~--~~~~dl~~I~~ia~e~g----------~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~G 318 (358)
++|++..+++ |...|+++|.++|+++| +++++|++|+.|.. +..+. ++|++++|+||++ |
T Consensus 177 ~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~-----~~~~~~~~~d~~~~s~~K~~-g 250 (432)
T 3a9z_A 177 CLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR-----RVDVEDLGVDFLTIVGHKFY-G 250 (432)
T ss_dssp EEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS-----CCCHHHHCCSEEEEEGGGTT-C
T ss_pred eEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCc-----ccChhhcCCCEEEEehhHhc-C
Confidence 8888876554 67899999999999999 99999999976532 21222 7899999999976 7
Q ss_pred CcEEEEEEeCC
Q 018300 319 PRGGMIFFKKD 329 (358)
Q Consensus 319 p~GG~I~~~~~ 329 (358)
|+.|+++++++
T Consensus 251 ~~~G~~~~~~~ 261 (432)
T 3a9z_A 251 PRIGALYVRGV 261 (432)
T ss_dssp CSCEEEEETTB
T ss_pred CcceEEEEccc
Confidence 88999999875
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=164.89 Aligned_cols=196 Identities=11% Similarity=-0.003 Sum_probs=133.2
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCC--CCcCCCCcHHHHHHHHHHHHH-HHHHcCCCCCCCcceEEeCCCHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLP--GKRYYGGNEYIDELETLCQKR-ALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~p--g~r~~~G~~~~~~lE~~~~~~-la~lfg~~~~~~~v~V~~~SGt~A~~~a~ 185 (358)
.+...+++.|++++...+......++. ....+...+ ....++++ +++++|.+ . .+++++|+.|+..++
T Consensus 16 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~la~~~~~~-~----v~~~~g~t~a~~~~~ 86 (371)
T 2e7j_A 16 QTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTP----PIHDFIHNQLPKFLGCD-V----ARVTNGAREAKFAVM 86 (371)
T ss_dssp HHTCCCCHHHHHHHHHC--------------------C----CHHHHHHTHHHHHTTSS-E----EEEESSHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHH----HHHHHHHHHHHHHcCCC-E----EEEeCChHHHHHHHH
Confidence 346678999999998776543211111 000011111 22335778 89999987 2 233444578999999
Q ss_pred HHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEece--ecCCCCCCCHHHHHHHhhh----cCCeEEEEcC
Q 018300 186 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR--LDESTGLVDYDMLEKTAIL----FRPKLIIAGA 259 (358)
Q Consensus 186 ~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~iD~d~le~~i~~----~~~klIi~~~ 259 (358)
.++++|||+|+++++.|.++.. .+...|.. ++.++ +++ ++.+|+++|++.++. .++++|++..
T Consensus 87 ~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~--~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~~~~~~v~~~~ 155 (371)
T 2e7j_A 87 HSLAKKDAWVVMDENCHYSSYV--------AAERAGLN--IALVPKTDYP-DYAITPENFAQTIEETKKRGEVVLALITY 155 (371)
T ss_dssp HHHCCTTCEEEEETTCCHHHHH--------HHHHTTCE--EEEECCCCTT-TCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred HHHhCCCCEEEEccCcchHHHH--------HHHHcCCe--EEEeecccCC-CCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence 9999999999999886655422 23455654 44444 553 478999999998863 3678888766
Q ss_pred CC--CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccC-cEEEEEEeCC
Q 018300 260 SA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGP-RGGMIFFKKD 329 (358)
Q Consensus 260 s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp-~GG~I~~~~~ 329 (358)
++ +|...|+++|.++|+++|+++++|++|+.|.. +.++. ++|++++|+||+|.+| ++|+++++++
T Consensus 156 ~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~ 225 (371)
T 2e7j_A 156 PDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRM-----PVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE 225 (371)
T ss_dssp SCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTB-----CCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTT
T ss_pred CCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCC-----CCChhhcCCCEEEecCCcCCCCCCCcEEEEEech
Confidence 54 45688999999999999999999999987643 11222 6899999999998776 4599999875
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=162.29 Aligned_cols=212 Identities=16% Similarity=0.089 Sum_probs=142.1
Q ss_pred hcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCC--CCCCcceEEeCCCH
Q 018300 103 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS 178 (358)
Q Consensus 103 ~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~--~~~~~v~V~~~SGt 178 (358)
..+++...++ ..++.+++++...+... ..+|+.. .|. .++++.+.+++.+.+|++ ++ ..+++++|+
T Consensus 42 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~---~g~---~~lr~~la~~~~~~~g~~~~~~---~v~~~~g~t 111 (389)
T 1o4s_A 42 DVINLTAGEPDFPTPEPVVEEAVRFLQKG-EVKYTDP---RGI---YELREGIAKRIGERYKKDISPD---QVVVTNGAK 111 (389)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHTTC-CCCCCCT---TCC---HHHHHHHHHHHHHHHTCCCCGG---GEEEESHHH
T ss_pred CEEEccCCCCCCCCCHHHHHHHHHHHhcC-CCCCCCC---CCC---HHHHHHHHHHHHHHhCCCCCHH---HEEEecCHH
Confidence 4456654444 35789999998876532 1233321 122 367777777777777863 32 234455667
Q ss_pred HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhhcCCeEEEE
Q 018300 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIA 257 (358)
Q Consensus 179 ~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~~~~klIi~ 257 (358)
+|+..++.++++|||+|+++++.|.++.. .+...|.. ++.++++++ +..+|+++|++.++. ++++|++
T Consensus 112 ~al~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~--~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 180 (389)
T 1o4s_A 112 QALFNAFMALLDPGDEVIVFSPVWVSYIP--------QIILAGGT--VNVVETFMSKNFQPSLEEVEGLLVG-KTKAVLI 180 (389)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCE--EEEEECCGGGTTCCCHHHHHHTCCT-TEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCCE--EEEEecCCccCCCCCHHHHHHhccc-CceEEEE
Confidence 89999999999999999999887665421 23445654 444455532 457899999998864 6888877
Q ss_pred cCCCC--CCCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccC--CC---CCCcEEEEcCcCcC--ccCcEEEEE
Q 018300 258 GASAY--PRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PF---KYCDVVTTTTHKSL--RGPRGGMIF 325 (358)
Q Consensus 258 ~~s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~--pl---~gaDiv~~S~hK~L--~Gp~GG~I~ 325 (358)
..+++ |...+ +++|.++|+++|+++++|++|+.+. ..+..++ .+ .+.|++++|+||++ +|.+.|+++
T Consensus 181 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~ 259 (389)
T 1o4s_A 181 NSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLV-YTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLI 259 (389)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSB-CSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEE
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccc-cCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEE
Confidence 65554 45555 8999999999999999999998543 3222111 11 25789999999998 455679999
Q ss_pred EeCCCCchhHHHHHHhh
Q 018300 326 FKKDPVLGVELESAINN 342 (358)
Q Consensus 326 ~~~~~~~~~~~~~~i~~ 342 (358)
+++ ++.+++..
T Consensus 260 ~~~------~~~~~l~~ 270 (389)
T 1o4s_A 260 SSE------KVATAVSK 270 (389)
T ss_dssp CCH------HHHHHHHH
T ss_pred eCH------HHHHHHHH
Confidence 876 45555543
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=166.87 Aligned_cols=161 Identities=17% Similarity=0.108 Sum_probs=121.9
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
+++..+++ ++++++++|.+. .+.++||++|+..++.+++++||+|+++++.|++..... . ..+...|
T Consensus 112 ~~~~~~~l----~~~lA~l~g~~~-----~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~--~--~~~~~~G 178 (445)
T 1qgn_A 112 GNPTTVVL----EEKISALEGAES-----TLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFI--E--TILPKMG 178 (445)
T ss_dssp CCHHHHHH----HHHHHHHHTCSE-----EEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHH--H--HTGGGGT
T ss_pred CChHHHHH----HHHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHH--H--HHHHHcC
Confidence 44544444 456888999863 477899999999999999999999999988776643210 0 0123345
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCC-eEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRP-KLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 298 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~-klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~ 298 (358)
. ++..++.+ |++++++.+++ ++ ++|++..+++ |...|+++|.++|+++|+++++|++|+.+..
T Consensus 179 ~--~v~~v~~~------d~~~l~~ai~~-~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~----- 244 (445)
T 1qgn_A 179 I--TATVIDPA------DVGALELALNQ-KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN----- 244 (445)
T ss_dssp C--EEEEECSS------CHHHHHHHHHH-SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT-----
T ss_pred C--EEEEeCCC------CHHHHHHHhcc-CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc-----
Confidence 5 34443332 89999999875 67 9998876665 4688999999999999999999999986642
Q ss_pred cCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCC
Q 018300 299 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (358)
Q Consensus 299 ~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~ 329 (358)
..+++ ++|++++|+||+++|+. +|+++++++
T Consensus 245 ~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~ 279 (445)
T 1qgn_A 245 QKALALGADLVLHSATKFLGGHNDVLAGCISGPLK 279 (445)
T ss_dssp CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHH
T ss_pred CCccccCCEEEEECCcccccccccceEEEEEECHH
Confidence 24566 89999999999998775 899999873
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=161.38 Aligned_cols=196 Identities=17% Similarity=0.169 Sum_probs=140.7
Q ss_pred cCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-
Q 018300 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI- 188 (358)
Q Consensus 110 s~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al- 188 (358)
.....++.+++++...+...+ |+. .+..++ +++.+++++|.+. .++++|||.|+..++.++
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~--------~~~-~~~~~~----l~~~la~~~~~~~-----~i~~~sGt~a~~~al~~~~ 70 (390)
T 3b8x_A 9 ASSTWDDLEYKAIQSVLDSKM--------FTM-GEYVKQ----YETQFAKTFGSKY-----AVMVSSGSTANLLMIAALF 70 (390)
T ss_dssp CCCCCCHHHHHHHHHHHHHTC--------CSS-CHHHHH----HHHHHHHHHTCSE-----EEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHcCC--------CCC-ChHHHH----HHHHHHHHHCCCc-----EEEECCHHHHHHHHHHHHH
Confidence 566789999999988775421 122 233334 4556888999874 477899999999999998
Q ss_pred ------ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC
Q 018300 189 ------LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262 (358)
Q Consensus 189 ------l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~ 262 (358)
+++||+|+++.+.|.++.. .+...|. +++.++++++++.+|+++|++.+++ ++++|++.. ..
T Consensus 71 ~~~~~~~~~g~~Vi~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~ 138 (390)
T 3b8x_A 71 FTKKPRLKKGDEIIVPAVSWSTTYY--------PLQQYGL--RVKFVDIDINTLNIDIESLKEAVTD-STKAILTVN-LL 138 (390)
T ss_dssp SSSSCSCCTTCEEEEESSSCHHHHH--------HHHHTTC--EEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEEC-GG
T ss_pred hhhhcCCCCcCEEEECCCCcHHHHH--------HHHHcCC--EEEEEecCccccCcCHHHHHHHhCc-CCeEEEEEC-Cc
Confidence 8899999999887665432 2334565 5556667766688999999998864 678887742 34
Q ss_pred CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcC--cCcCccCcEEEEEEeCCCCchhHHHHH
Q 018300 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTT--HKSLRGPRGGMIFFKKDPVLGVELESA 339 (358)
Q Consensus 263 ~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~--hK~L~Gp~GG~I~~~~~~~~~~~~~~~ 339 (358)
+...|+++|.++|+++|+++++|++|+.|....+. .+. ..|+.++|. .|.+.++.||+++++++ ++.++
T Consensus 139 g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~---~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~-----~l~~~ 210 (390)
T 3b8x_A 139 GNPNNFDEINKIIGGRDIILLEDNCESMGATFNNK---CAGTFGLMGTFSSFYSNHIATMEGGCIVTDDE-----EIYHI 210 (390)
T ss_dssp GCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSCSSSCEEEEESCH-----HHHHH
T ss_pred cChhhHHHHHHHHHHcCCEEEEECcCcccCEECCc---ccccccceEEEEccCCCCCccCCceEEEeCCH-----HHHHH
Confidence 55689999999999999999999999988664221 122 246666553 34477778999999875 56665
Q ss_pred Hhhc
Q 018300 340 INNA 343 (358)
Q Consensus 340 i~~~ 343 (358)
+...
T Consensus 211 ~~~~ 214 (390)
T 3b8x_A 211 LLCI 214 (390)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-18 Score=163.47 Aligned_cols=199 Identities=12% Similarity=0.083 Sum_probs=141.9
Q ss_pred cccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHH
Q 018300 106 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (358)
Q Consensus 106 ~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~ 185 (358)
++-.+.+...+ +++++...+.... |+ ..+...+ .++.+++++|.+. .+++.||+.|+..++
T Consensus 10 ~l~~~~~~~~~-~~~~~~~~~~~~~--------~~-~~~~~~~----l~~~la~~~~~~~-----~~~~~~gt~a~~~~~ 70 (374)
T 3uwc_A 10 YLERQFADIEP-YLNDLREFIKTAD--------FT-LGAELEK----FEKRFAALHNAPH-----AIGVGTGTDALAMSF 70 (374)
T ss_dssp CHHHHTSSCHH-HHHHHHHHHHHTC--------CS-SCHHHHH----HHHHHHHHTTCSE-----EEEESCHHHHHHHHH
T ss_pred ccccCCCCchH-HHHHHHHHHHcCC--------cc-cChhHHH----HHHHHHHHhCCCc-----EEEeCCHHHHHHHHH
Confidence 33344445555 8888877665321 22 2233333 4556889999874 467889999999999
Q ss_pred HHh-ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC
Q 018300 186 TAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR 264 (358)
Q Consensus 186 ~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~ 264 (358)
.++ ++|||+|+++++.|.++.. .+...|. ++..++++ +++.+|++++++.+++ ++++|+.+ +.+|.
T Consensus 71 ~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~~~~-~~~~v~~~-n~~G~ 137 (374)
T 3uwc_A 71 KMLNIGAGDEVITCANTFIASVG--------AIVQAGA--TPVLVDSE-NGYVIDPEKIEAAITD-KTKAIMPV-HYTGN 137 (374)
T ss_dssp HHTTCCTTCEEEEESSSCHHHHH--------HHHHTTC--EEEEECBC-TTSSBCGGGTGGGCCT-TEEEECCB-CGGGC
T ss_pred HHcCCCCCCEEEECCCccHHHHH--------HHHHcCC--EEEEEecC-CCCCcCHHHHHHhCCC-CceEEEEe-CCcCC
Confidence 999 9999999999886655421 2345565 44555565 5678999999998865 67877732 23567
Q ss_pred CCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCc--CcCcc-CcEEEEEEeCCCCchhHHHHHH
Q 018300 265 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTH--KSLRG-PRGGMIFFKKDPVLGVELESAI 340 (358)
Q Consensus 265 ~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~h--K~L~G-p~GG~I~~~~~~~~~~~~~~~i 340 (358)
..|+++|.++|+++|+++++|++|+.|....+ .++. .+|++++|+| |+|++ +.||+++++++ ++.+++
T Consensus 138 ~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~---~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~-----~~~~~~ 209 (374)
T 3uwc_A 138 IADMPALAKIAKKHNLHIVEDACQTILGRIND---KFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSD-----EYAEKL 209 (374)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTCTTCEETT---EETTSSSSEEEEECSSSSSSCCSSCCEEEEESCH-----HHHHHH
T ss_pred cCCHHHHHHHHHHcCCEEEEeCCCccCceeCC---eeccccccEEEEeCCCCCcCCccceeEEEEeCCH-----HHHHHH
Confidence 88999999999999999999999997755332 1222 4799999988 99987 56899998875 676666
Q ss_pred hhcc
Q 018300 341 NNAV 344 (358)
Q Consensus 341 ~~~~ 344 (358)
....
T Consensus 210 ~~~~ 213 (374)
T 3uwc_A 210 RLYR 213 (374)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6543
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-17 Score=158.27 Aligned_cols=234 Identities=11% Similarity=0.081 Sum_probs=154.0
Q ss_pred ccccccChHHHHHHHHHHHHhhhcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la 158 (358)
+++....+.++..+.+... ....+++...++ ..++.|++++...+... ..+|+.. .|. .++++.+.++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~---~g~---~~l~~~la~~l~ 81 (386)
T 1u08_A 10 SKLPQLGTTIFTQMSALAQ-QHQAINLSQGFPDFDGPRYLQERLAHHVAQG-ANQYAPM---TGV---QALREAIAQKTE 81 (386)
T ss_dssp CSCCCCCCCHHHHHHHHHH-HTTCEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT---TCC---HHHHHHHHHHHH
T ss_pred hhhhcCCccHHHHHHHHHh-cCCeEEecCCCCCCCCCHHHHHHHHHHHHhh-ccCCCCC---CCC---HHHHHHHHHHHH
Confidence 4455666666665544332 234566654433 36789999998877542 1234321 122 357777777777
Q ss_pred HHcCCC--CCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCC
Q 018300 159 AAFNLD--ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 236 (358)
Q Consensus 159 ~lfg~~--~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 236 (358)
+.+|.+ ++ . ..+++.+|++|+..++.++++|||+|++.++.|.++.. .+...|. +++.++++++++
T Consensus 82 ~~~g~~~~~~-~-~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~ 149 (386)
T 1u08_A 82 RLYGYQPDAD-S-DITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAP--------AIALSGG--IVKRMALQPPHF 149 (386)
T ss_dssp HHHSCCCCTT-T-TEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECCTTTC
T ss_pred HHhCCCCCCC-C-CEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEeecCcccC
Confidence 778854 32 0 12445566789999999999999999999887765421 2344565 444555654456
Q ss_pred CCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCC---C--C-CC
Q 018300 237 LVDYDMLEKTAILFRPKLIIAGASAY--PRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---F--K-YC 305 (358)
Q Consensus 237 ~iD~d~le~~i~~~~~klIi~~~s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p---l--~-ga 305 (358)
.+|+++|++.+. .++++|++..+++ |...+ +++|.++|+++|+++++|++|... ...+....+ + . +.
T Consensus 150 ~~d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~ 227 (386)
T 1u08_A 150 RVDWQEFAALLS-ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHI-NFSQQGHASVLAHPQLRER 227 (386)
T ss_dssp CCCHHHHHHHCC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTC-BCCSSCCCCGGGSHHHHTT
T ss_pred cCCHHHHHHhhc-ccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEcccccc-ccCCCCCcChhcccCccCc
Confidence 799999999886 3788888765554 44554 789999999999999999998743 332321111 2 1 57
Q ss_pred cEEEEcCcCcCc--cCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 306 DVVTTTTHKSLR--GPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 306 Div~~S~hK~L~--Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
|+++.|+||+++ |.|.|++++++ ++.+++..
T Consensus 228 ~i~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~ 260 (386)
T 1u08_A 228 AVAVSSFGKTYHMTGWKVGYCVAPA------PISAEIRK 260 (386)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEECCH------HHHHHHHH
T ss_pred EEEEecchhhcCCcccceEEEEcCH------HHHHHHHH
Confidence 899999999984 55679999876 45555543
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-17 Score=163.02 Aligned_cols=192 Identities=17% Similarity=0.218 Sum_probs=138.4
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD 193 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD 193 (358)
.|+.+++++...+... .|+. ..+...++ ++.+++++|.+. .+++.+|++|+..++.++. +||
T Consensus 30 ~p~~~~~a~~~~~~~~---~y~~-----~~~~~~~l----~~~la~~~~~~~-----v~~~~ggt~al~~~l~~l~-~gd 91 (424)
T 2po3_A 30 DRARLYERLDRALDSQ---WLSN-----GGPLVREF----EERVAGLAGVRH-----AVATCNATAGLQLLAHAAG-LTG 91 (424)
T ss_dssp CHHHHHHHHHHHHHHT---CCSS-----SCHHHHHH----HHHHHHHHTSSE-----EEEESCHHHHHHHHHHHHT-CCS
T ss_pred ChHHHHHHHHHHHhcC---Cccc-----CCHHHHHH----HHHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcC-CCC
Confidence 4668888887766432 1211 02333344 456888998853 3566788889999999874 899
Q ss_pred EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHH
Q 018300 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQ 273 (358)
Q Consensus 194 ~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ 273 (358)
+|+++++.|.++.. .+...|. +++.++++++++.+|+++|++.++. ++++|++.. .+|...|+++|.+
T Consensus 92 ~Vlv~~~~~~~~~~--------~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~tG~~~~l~~i~~ 159 (424)
T 2po3_A 92 EVIMPSMTFAATPH--------ALRWIGL--TPVFADIDPDTGNLDPDQVAAAVTP-RTSAVVGVH-LWGRPCAADQLRK 159 (424)
T ss_dssp EEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTSSBCHHHHGGGCCT-TEEEEEEEC-GGGCCCCHHHHHH
T ss_pred EEEECCCccHHHHH--------HHHHcCC--EEEEEecCCCcCCcCHHHHHHhhCc-CCcEEEEEC-CCCCcCCHHHHHH
Confidence 99999987665432 2345565 4556667655678999999998864 688887753 4667789999999
Q ss_pred HHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCc--CcCccCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 274 IADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 274 ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~h--K~L~Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
+|+++|+++++|++|+.|+...+. ++. ..|++++|+| |+|+|+++|+++++++ ++.+++...
T Consensus 160 la~~~~~~li~Dea~~~g~~~~~~---~~~~~~di~~~S~sk~K~l~~~~~G~~v~~~~-----~l~~~l~~~ 224 (424)
T 2po3_A 160 VADEHGLRLYFDAAHALGCAVDGR---PAGSLGDAEVFSFHATKAVNAFEGGAVVTDDA-----DLAARIRAL 224 (424)
T ss_dssp HHHHTTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHHHHH
T ss_pred HHHHcCCEEEEECccccCCeECCe---ecccccCEEEEeCCCCCCccCCCCeEEEeCCH-----HHHHHHHHH
Confidence 999999999999999987764432 233 4689999987 9898889999999844 566666543
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-17 Score=159.65 Aligned_cols=227 Identities=12% Similarity=0.073 Sum_probs=151.7
Q ss_pred cccccccChHHHHHHHHHHHHhhhcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHH
Q 018300 80 DYSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (358)
Q Consensus 80 ~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~l 157 (358)
++++..+++..+..+.+... ....+++..+++ ..++.+.+++...+.+. ..+|+.. .|. .++++.+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~---~g~---~~l~~~la~~~ 75 (411)
T 2o0r_A 4 VSRLRPYATTVFAEMSALAT-RIGAVNLGQGFPDEDGPPKMLQAAQDAIAGG-VNQYPPG---PGS---APLRRAIAAQR 75 (411)
T ss_dssp CGGGGGGSSCHHHHHHHHHH-TTTCEESSCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT---TCC---HHHHHHHHHHH
T ss_pred hhHhHhcCccHHHHHHHHhh-cCCeeeccCcCCCCCCCHHHHHHHHHHHhcC-CCCCCCC---CCC---HHHHHHHHHHH
Confidence 45667777777776665433 234566654443 35789999998877542 2234321 122 35777777777
Q ss_pred HHHcCCC--CCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-
Q 018300 158 LAAFNLD--ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES- 234 (358)
Q Consensus 158 a~lfg~~--~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~- 234 (358)
.+.+|.+ +++. .+++++|++|+..++.++++|||+|++.++.|.++.. .+...|..+ +.++++++
T Consensus 76 ~~~~g~~~~~~~~--v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~--------~~~~~g~~~--~~v~~~~~~ 143 (411)
T 2o0r_A 76 RRHFGVDYDPETE--VLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSP--------VVAMAGAHR--VTVPLVPDG 143 (411)
T ss_dssp HHHHCCCCCTTTS--EEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEE--EEEECEEET
T ss_pred HHHcCCCCCCCce--EEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH--------HHHHcCCEE--EEeeccccc
Confidence 7777854 3101 2444566789999999999999999999887766421 234556544 44444432
Q ss_pred -CCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCC---C---
Q 018300 235 -TGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---F--- 302 (358)
Q Consensus 235 -~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p---l--- 302 (358)
++.+|+++|++.++. ++++|++..+++ |...+ +++|.++|+++|+++++|++|+.+. ..+..+.+ +
T Consensus 144 ~~~~~d~~~l~~~l~~-~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~-~~g~~~~~~~~~~~~ 221 (411)
T 2o0r_A 144 RGFALDADALRRAVTP-RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLV-FDHARHLPLAGFDGM 221 (411)
T ss_dssp TEEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB-CTTCCCCCGGGSTTT
T ss_pred cCCCCCHHHHHHhhcc-CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccc-cCCCCCcChhhccCC
Confidence 346999999998864 688887765554 45555 5899999999999999999997543 33321111 2
Q ss_pred CCCcEEEEcCcCcC--ccCcEEEEEEeC
Q 018300 303 KYCDVVTTTTHKSL--RGPRGGMIFFKK 328 (358)
Q Consensus 303 ~gaDiv~~S~hK~L--~Gp~GG~I~~~~ 328 (358)
.+.|++++|+||++ +|.+.|++++++
T Consensus 222 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 249 (411)
T 2o0r_A 222 AERTITISSAAKMFNCTGWKIGWACGPA 249 (411)
T ss_dssp GGGEEEEEEHHHHTTCTTTCEEEEECCH
T ss_pred CCCEEEEeechhhcCCccceEEEEeeCH
Confidence 15689999999998 456789999876
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-17 Score=159.13 Aligned_cols=232 Identities=13% Similarity=0.122 Sum_probs=148.2
Q ss_pred ccCh-HHHHHHHHHHHHh----hhcccccccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHH
Q 018300 85 EADP-EVCEIITKEKERQ----FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (358)
Q Consensus 85 ~~d~-~~~~~i~~e~~~~----~~~i~lias~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~l 157 (358)
++++ +.|..+.+...+. ..-+++..+++. .++.|++++.+.+.+....+|+ ......++++.+.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~~~~~~~l~~~ia~~~ 76 (376)
T 2dou_A 3 RVPEPSVFLVVDEAKRKARERGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYC------LKSCTLPFLEEAARWY 76 (376)
T ss_dssp -CCCTHHHHHHHHHHHHHHHTTCCCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCC------CHHHHHHHHHHHHHHH
T ss_pred cCCccchHHHHHHHHHHhhccCCCEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCC------CCCCCHHHHHHHHHHH
Confidence 3445 6666665544433 234566555443 5799999998876542122232 2223456666666666
Q ss_pred HHHcCCCCCCCcceEEeC-CCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCC
Q 018300 158 LAAFNLDENKWGVNVQPL-SGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 236 (358)
Q Consensus 158 a~lfg~~~~~~~v~V~~~-SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 236 (358)
.+.+|.+.+ ...+|.++ +|++|+..++.++++|||+|++.++.|.++.. .+...|.. ++.+++ +++.
T Consensus 77 ~~~~g~~~~-~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~~--~~~~~~-~~~~ 144 (376)
T 2dou_A 77 EGRYGVGLD-PRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFG--------AARVASLR--TFLIPL-REDG 144 (376)
T ss_dssp HHHHSCCCC-TTTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHHHTTCE--EEEECB-CTTS
T ss_pred HHHhCCCCC-CCccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHH--------HHHHcCCE--EEEeeC-CCCC
Confidence 666698621 00024444 55679999999999999999999876655421 22345653 444445 3344
Q ss_pred CCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCC---C--CCc
Q 018300 237 LVDYDMLEKTAILFRPKLIIAGASAY--PRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K--YCD 306 (358)
Q Consensus 237 ~iD~d~le~~i~~~~~klIi~~~s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~--gaD 306 (358)
.+|++++++.+.. ++++|++..+++ |...+ +++|.++|+++|+++++|++|+.+ ...+..+..+ + +.+
T Consensus 145 ~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~ 222 (376)
T 2dou_A 145 LADLKAVPEGVWR-EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQ-VYEGEAPSPLALPGAKERV 222 (376)
T ss_dssp SBCGGGSCHHHHH-HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGG-BSSSCCCCGGGSTTGGGTE
T ss_pred CCCHHHHHHhhcc-CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhc-ccCCCCCChhhcCCCCCcE
Confidence 6899999888753 688888865555 44555 678899999999999999999844 3222211222 2 456
Q ss_pred EEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 307 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 307 iv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+++.|+||++ +|.+.|++++++ ++.+++..
T Consensus 223 i~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~ 254 (376)
T 2dou_A 223 VELFSLSKSYNLAGFRLGFALGSE------EALARLER 254 (376)
T ss_dssp EEEEEHHHHHTCGGGCCEEEEECH------HHHHHHHH
T ss_pred EEEecchhhcCChhheeEEEecCH------HHHHHHHH
Confidence 8899999997 566789999876 45555543
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-17 Score=159.86 Aligned_cols=207 Identities=17% Similarity=0.239 Sum_probs=142.4
Q ss_pred cccccccCC--C-CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHH
Q 018300 104 SLELIASEN--F-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (358)
Q Consensus 104 ~i~lias~n--~-~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A 180 (358)
-+++...++ + .++.+++++...+.. +..++.+.++..|.. ++.+.+++++++++|.+. .+++++|++|
T Consensus 45 ~idl~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~---~~~~~l~~~la~~~g~~~-----v~~~~ggt~a 115 (398)
T 3a2b_A 45 VLMFGSNSYLGLTTDTRIIKAAQDALEK-YGTGCAGSRFLNGTL---DIHVELEEKLSAYVGKEA-----AILFSTGFQS 115 (398)
T ss_dssp EEECSCSCTTCGGGCHHHHHHHHHHHHH-HCSCCCSBTTTTCCC---HHHHHHHHHHHHHHTCSE-----EEEESSHHHH
T ss_pred EEEeecccccCCCCCHHHHHHHHHHHHH-cCCCCCCcCcccCCc---HHHHHHHHHHHHHhCCCc-----EEEECCHHHH
Confidence 345544433 2 788999999887754 223333322333432 344446777899999853 3667788899
Q ss_pred HHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc---CCeEEEE
Q 018300 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIA 257 (358)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~---~~klIi~ 257 (358)
+..++.++++|||+|++.++.|+++.. .+...|.. ++.++. +|++++++.++.. ++++|++
T Consensus 116 ~~~~~~~~~~~gd~V~~~~p~~~~~~~--------~~~~~g~~--~~~v~~------~d~~~l~~~l~~~~~~~~~~v~~ 179 (398)
T 3a2b_A 116 NLGPLSCLMGRNDYILLDERDHASIID--------GSRLSFSK--VIKYGH------NNMEDLRAKLSRLPEDSAKLICT 179 (398)
T ss_dssp HHHHHHHSSCTTCEEEEETTCCHHHHH--------HHHHSSSE--EEEECT------TCHHHHHHHHHTSCSSSCEEEEE
T ss_pred HHHHHHHHhCCCCEEEECCccCHHHHH--------HHHHcCCc--eEEeCC------CCHHHHHHHHHhhccCCceEEEE
Confidence 999999999999999999987765432 23455653 444332 6899999988754 6888888
Q ss_pred cCCCC--CCCCCHHHHHHHHHHcCCEEEEecccccccccc-CCcc-C--CCC-CCcEEEEcCcCcCccCcEEEEEEeCCC
Q 018300 258 GASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SVVA-D--PFK-YCDVVTTTTHKSLRGPRGGMIFFKKDP 330 (358)
Q Consensus 258 ~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~~~-~--pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~~ 330 (358)
..+++ |...++++|.++|+++|+++++|++|+.|.... +... . .+. ++|++++|+||+++ |.||++++++
T Consensus 180 ~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~-- 256 (398)
T 3a2b_A 180 DGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLGGFVAGDA-- 256 (398)
T ss_dssp ESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSCEEEEECH--
T ss_pred eCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCCcEEEeCH--
Confidence 76654 567899999999999999999999998664311 1100 0 111 36999999999885 6679999876
Q ss_pred CchhHHHHHHhh
Q 018300 331 VLGVELESAINN 342 (358)
Q Consensus 331 ~~~~~~~~~i~~ 342 (358)
++.+++..
T Consensus 257 ----~~~~~l~~ 264 (398)
T 3a2b_A 257 ----DVIDFLKH 264 (398)
T ss_dssp ----HHHHHHHH
T ss_pred ----HHHHHHHH
Confidence 55555544
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=160.95 Aligned_cols=211 Identities=15% Similarity=0.094 Sum_probs=143.0
Q ss_pred cccccccC--CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceEEeCCCHH
Q 018300 104 SLELIASE--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSGSP 179 (358)
Q Consensus 104 ~i~lias~--n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg--~~~~~~~v~V~~~SGt~ 179 (358)
-+++..++ -..++.|++++...+.+. ..+|+. . ..++++.+++++++.+| ++++ ..+++++|++
T Consensus 29 ~i~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-----~---~~~l~~~la~~l~~~~g~~~~~~---~i~~~~g~~~ 96 (391)
T 3dzz_A 29 ELPMWIAEMDFKIAPEIMASMEEKLKVA-AFGYES-----V---PAEYYKAVADWEEIEHRARPKED---WCVFASGVVP 96 (391)
T ss_dssp CEECCSSCCSSCCCHHHHHHHHHHHTTC-CCCCBC-----C---CHHHHHHHHHHHHHHHSCCCCGG---GEEEESCHHH
T ss_pred ceeccccCCCCCCCHHHHHHHHHHHhcC-cCCCCC-----C---CHHHHHHHHHHHHHHhCCCCCHH---HEEECCCHHH
Confidence 34444333 346899999998876542 223332 1 24677778888999998 4443 2244445578
Q ss_pred HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec--CCCCCCCHHHHHHHhhhcCCeEEEE
Q 018300 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--ESTGLVDYDMLEKTAILFRPKLIIA 257 (358)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~iD~d~le~~i~~~~~klIi~ 257 (358)
|+..++.++++|||+|++.++.|.++.. .+...|. +++.++++ ..+..+|+++|++.++..++++|++
T Consensus 97 a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i 166 (391)
T 3dzz_A 97 AISAMVRQFTSPGDQILVQEPVYNMFYS--------VIEGNGR--RVISSDLIYENSKYSVNWADLEEKLATPSVRMMVF 166 (391)
T ss_dssp HHHHHHHHHSCTTCEEEECSSCCHHHHH--------HHHHTTC--EEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEE
T ss_pred HHHHHHHHhCCCCCeEEECCCCcHHHHH--------HHHHcCC--EEEEeeeeecCCceeecHHHHHHHHhccCceEEEE
Confidence 9999999999999999999886655321 2344565 44555553 2223499999999987557898877
Q ss_pred cCCCCC--CC---CCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-----CCc--EEEEcCcCcC--ccCcEEE
Q 018300 258 GASAYP--RD---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCD--VVTTTTHKSL--RGPRGGM 323 (358)
Q Consensus 258 ~~s~~~--~~---~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-----gaD--iv~~S~hK~L--~Gp~GG~ 323 (358)
..++++ .. .++++|.++|+++|+++++|++|+.+ ...+..+.++. ..| ++++|+||++ +|.+.|+
T Consensus 167 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~ 245 (391)
T 3dzz_A 167 CNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDL-VLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAAC 245 (391)
T ss_dssp ESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTC-BCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEE
T ss_pred ECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccc-cCCCCCceehhhcCccccCcEEEEEeChhhccccchhheE
Confidence 665544 44 46899999999999999999998743 33332222221 256 8899999996 6677899
Q ss_pred EEEeCCCCchhHHHHHHhh
Q 018300 324 IFFKKDPVLGVELESAINN 342 (358)
Q Consensus 324 I~~~~~~~~~~~~~~~i~~ 342 (358)
++++++ ++.+++..
T Consensus 246 ~~~~~~-----~~~~~~~~ 259 (391)
T 3dzz_A 246 AIIPNP-----DLRARAEE 259 (391)
T ss_dssp EECCSH-----HHHHHHHH
T ss_pred EEECCH-----HHHHHHHH
Confidence 998744 56666544
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=160.87 Aligned_cols=198 Identities=14% Similarity=0.074 Sum_probs=134.7
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pG 192 (358)
.+++.|++++...+.+....+|+. ..|.. ++++.+++++++++|.+.+.....+++++|++|+..++.+++++|
T Consensus 53 ~~~~~v~~a~~~~~~~~~~~~y~~---~~g~~---~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g 126 (407)
T 3nra_A 53 EPTPGAFDLFSAGVQSGGVQAYTE---YRGDL---GIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARG 126 (407)
T ss_dssp CCCTTHHHHHHHHHHHTHHHHSCC---TTCCH---HHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCCTT
T ss_pred CCcHHHHHHHHHHHhcCCCCCcCC---CCCCH---HHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCCCC
Confidence 467889998887765432222322 11322 466667788899999852100013455566789999999999999
Q ss_pred CEEEecCCCCCcccccccccchhccccCCceEEEEeceec-----CCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCC
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-----ESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRD 265 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~ 265 (358)
|+|++.++.|.++.. .+...|..+ ++++++ ++++.+|++++++.+.. ++++|++..+++ |..
T Consensus 127 d~vl~~~~~~~~~~~--------~~~~~g~~~--~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~ 195 (407)
T 3nra_A 127 DKVAIVQPDYFANRK--------LVEFFEGEM--VPVQLDYVSADETRAGLDLTGLEEAFKA-GARVFLFSNPNNPAGVV 195 (407)
T ss_dssp CEEEEEESCCTHHHH--------HHHHTTCEE--EEEEBCCCSSCCSSCCBCHHHHHHHHHT-TCCEEEEESSCTTTCCC
T ss_pred CEEEEcCCcccchHH--------HHHHcCCEE--EEeecccccccCcCCCcCHHHHHHHHhh-CCcEEEEcCCCCCCCcc
Confidence 999998876655421 234556544 444452 24568999999999875 788877755554 456
Q ss_pred CC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-------CCcEEEEcCcCcC--ccCcEEEEEEeC
Q 018300 266 FD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTTTHKSL--RGPRGGMIFFKK 328 (358)
Q Consensus 266 ~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-------gaDiv~~S~hK~L--~Gp~GG~I~~~~ 328 (358)
.+ +++|+++|+++|+++++|++|+.+.. .+....++. +.++++.|+||++ .|.+.|++++++
T Consensus 196 ~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~-~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 269 (407)
T 3nra_A 196 YSAEEIGQIAALAARYGATVIADQLYSRLRY-AGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSR 269 (407)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTSBC-TTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECH
T ss_pred cCHHHHHHHHHHHHHcCCEEEEEcccccccc-CCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCH
Confidence 67 89999999999999999999985433 332111211 3568899999997 466779999876
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.8e-17 Score=161.45 Aligned_cols=199 Identities=9% Similarity=0.015 Sum_probs=138.7
Q ss_pred CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCC--CcceEEeCCCHHHHHHHHHHhc
Q 018300 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENK--WGVNVQPLSGSPANFEVYTAIL 189 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~--~~v~V~~~SGt~A~~~a~~all 189 (358)
.+.++.+.+++.+.+.... .+ +...+...++|+.+++++++++|++.+. ....+++.+||+|+..++.++.
T Consensus 52 ~~~~~~v~e~~~~a~~~~~-~~------~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~ 124 (452)
T 2dgk_A 52 TWDDENVHKLMDLSINKNW-ID------KEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMK 124 (452)
T ss_dssp CCCCHHHHHHHHHTTTCBT-TC------TTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccCC-CC------hhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHH
Confidence 4567889999887664321 11 1122445678888999999999998642 1113556778889999988875
Q ss_pred c--------CC-----CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEE
Q 018300 190 K--------PH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 256 (358)
Q Consensus 190 ~--------pG-----D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi 256 (358)
+ +| |+|++++ .|. ++. +.+...|. +++.++++++++.+|+++|++.+++ ++++|+
T Consensus 125 ~~~~~~~~~~G~~~~~~~vi~~~-~h~---~~~-----~~~~~~G~--~v~~v~~~~~~~~~d~~~l~~~i~~-~t~~v~ 192 (452)
T 2dgk_A 125 WRWRKRMEAAGKPTDKPNLVCGP-VQI---CWH-----KFARYWDV--ELREIPMRPGQLFMDPKRMIEACDE-NTIGVV 192 (452)
T ss_dssp HHHHHHHHHTTCCCSCCEEEESS-CCH---HHH-----HHHHHTTC--EEEECCCBTTBCSCCHHHHHHHCCT-TEEEEE
T ss_pred HHHHHHHHhcCCCCCCcEEEECC-CcH---HHH-----HHHHHcCc--eEEEEecCCCCCeECHHHHHHHHhh-CCEEEE
Confidence 4 66 5888876 443 221 23345676 4556666644679999999999865 678887
Q ss_pred EcCCC--CCCCCCHHHHHHHHHHc------CCEEEEecccccccc--ccCCccCC--CCCCcEEEEcCcCcCccC-cEEE
Q 018300 257 AGASA--YPRDFDYPRMRQIADAV------GALLMMDMAHISGLV--AASVVADP--FKYCDVVTTTTHKSLRGP-RGGM 323 (358)
Q Consensus 257 ~~~s~--~~~~~dl~~I~~ia~e~------g~~livD~Ah~~Gl~--~~g~~~~p--l~gaDiv~~S~hK~L~Gp-~GG~ 323 (358)
+..++ +|...|+++|.++|+++ |+++++|+||+.+.. ..+..+.. +.++|++++++||++.+| +.|+
T Consensus 193 ~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~ 272 (452)
T 2dgk_A 193 PTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGW 272 (452)
T ss_dssp CBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEE
T ss_pred EEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEE
Confidence 76554 46788999999999996 999999999886543 12211122 238999999999998555 5599
Q ss_pred EEEeCC
Q 018300 324 IFFKKD 329 (358)
Q Consensus 324 I~~~~~ 329 (358)
++++++
T Consensus 273 ~~~~~~ 278 (452)
T 2dgk_A 273 VIWRDE 278 (452)
T ss_dssp EEESSG
T ss_pred EEEcCH
Confidence 999764
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=163.99 Aligned_cols=168 Identities=20% Similarity=0.242 Sum_probs=124.7
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
+|.+.|| +++..+++| +++++++|.+. .+.++||+.|+..++.++++|||+|++.++.|+++.....
T Consensus 72 ~~~y~r~--~~p~~~~l~----~~la~~~g~~~-----~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~-- 138 (414)
T 3ndn_A 72 HYVYSRY--GNPTVSVFE----ERLRLIEGAPA-----AFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCS-- 138 (414)
T ss_dssp CCCBTTT--CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHH--
T ss_pred CcCcCCC--CChHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHH--
Confidence 4444444 456555554 45888999764 3778899999999999999999999999987776432100
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~ 290 (358)
......|. ++.+++.+ |++++++.++. ++|+|++..+++ |...|+++|.++|+++|++|++|++|+.
T Consensus 139 --~~~~~~g~--~~~~v~~~------d~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~ 207 (414)
T 3ndn_A 139 --EILPRWGV--QTVFVDGD------DLSQWERALSV-PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFAT 207 (414)
T ss_dssp --THHHHTTC--EEEEECTT------CHHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTH
T ss_pred --HHHHHcCc--EEEEeCCC------CHHHHHHhcCC-CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcc
Confidence 01122455 44443332 89999998864 789998876655 4688999999999999999999999986
Q ss_pred cccccCCccCCCC-CCcEEEEcCcCcCcc---CcEEEEEEeCC
Q 018300 291 GLVAASVVADPFK-YCDVVTTTTHKSLRG---PRGGMIFFKKD 329 (358)
Q Consensus 291 Gl~~~g~~~~pl~-gaDiv~~S~hK~L~G---p~GG~I~~~~~ 329 (358)
|.. ..++. ++|+++.|++|+|+| +++|+++++++
T Consensus 208 ~~~-----~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~ 245 (414)
T 3ndn_A 208 PLL-----QQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDRE 245 (414)
T ss_dssp HHH-----CCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHH
T ss_pred ccc-----CCchhcCCCeEeccCCccccCCCCceEEEEEECHH
Confidence 643 24556 899999999999976 45899999875
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-17 Score=159.06 Aligned_cols=221 Identities=16% Similarity=0.124 Sum_probs=146.5
Q ss_pred cccccccChHHHHHHHHHHHHhhhcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHH
Q 018300 80 DYSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (358)
Q Consensus 80 ~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~l 157 (358)
+++++.+.+..+..+.+.... ...+++..+++ ..++.+.+++...+.. ...|+.. .|. .+ .++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~---~~~---~~----l~~~l 70 (381)
T 1v2d_A 4 HPRTEAAKESIFPRMSGLAQR-LGAVNLGQGFPSNPPPPFLLEAVRRALGR--QDQYAPP---AGL---PA----LREAL 70 (381)
T ss_dssp CGGGGGC---CHHHHHHHHHH-HTCEECCCCSCSSCCCHHHHHHHHHHTTT--SCSCCCT---TCC---HH----HHHHH
T ss_pred hhhhhhcCccHHHHHHHHHhc-CCeEEecCCCCCCCCCHHHHHHHHHHHHH--hcCCCCC---CCC---HH----HHHHH
Confidence 455666666666655554332 34566654444 3578999999887654 2233321 122 23 34557
Q ss_pred HHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec--CCC
Q 018300 158 LAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--EST 235 (358)
Q Consensus 158 a~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~--~~~ 235 (358)
++++++++++ .+++.+|++|+..++.++++|||+|++.++.|.++.. .+...|.. ++.++.+ +++
T Consensus 71 a~~~~~~~~~---v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~--~~~v~~~~~~~~ 137 (381)
T 1v2d_A 71 AEEFAVEPES---VVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLP--------DAFLAGAK--ARLVRLDLTPEG 137 (381)
T ss_dssp HHHHTSCGGG---EEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCE--EEEEECEEETTE
T ss_pred HHhcCCChhh---EEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCCE--EEEEeCCCCCcc
Confidence 8889987642 3455667789999999999999999999887765421 23445654 4444454 344
Q ss_pred CCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCC----CCCc
Q 018300 236 GLVDYDMLEKTAILFRPKLIIAGASAY--PRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF----KYCD 306 (358)
Q Consensus 236 ~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl----~gaD 306 (358)
+.+|+++|++.+.. ++++|++..+++ |...+ +++|.++|+++|+++++|++|+.+.. |..+.++ .+.|
T Consensus 138 ~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~--g~~~~~~~~~~~~~~ 214 (381)
T 1v2d_A 138 FRLDLSALEKALTP-RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY--GERPRRLREFAPERT 214 (381)
T ss_dssp EECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS--SSCCCCHHHHCTTTE
T ss_pred CCcCHHHHHHhcCc-CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc--CCCCCCHHHhcCCCE
Confidence 67999999998753 688888765554 44554 89999999999999999999874432 2211111 2689
Q ss_pred EEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 307 VVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 307 iv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
++++|+||++ +|.+.|+++++++
T Consensus 215 ~~~~s~sK~~~~~G~r~G~~~~~~~ 239 (381)
T 1v2d_A 215 FTVGSAGKRLEATGYRVGWIVGPKE 239 (381)
T ss_dssp EEEEEHHHHTTCGGGCCEEEECCTT
T ss_pred EEEeechhhcCCcccceEEEEeCHH
Confidence 9999999987 4667899999775
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-16 Score=153.94 Aligned_cols=208 Identities=13% Similarity=0.121 Sum_probs=141.3
Q ss_pred hcccccccCC--CCcHHHHHHHhhhhhccc---CCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceEEeC
Q 018300 103 KSLELIASEN--FTSRAVMEAVGSCLTNKY---SEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPL 175 (358)
Q Consensus 103 ~~i~lias~n--~~s~~V~~al~~~l~~~~---~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~--~~~~~~v~V~~~ 175 (358)
+-+++...+. .+++.|.+++...+.... ..+|+. ..|. .++++.+.+++.+.+|. +++ ..++++
T Consensus 36 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~---~~g~---~~lr~~la~~l~~~~g~~~~~~---~i~~~~ 106 (398)
T 3ele_A 36 NVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTS---AQGD---VETRAAIAEFLNNTHGTHFNAD---NLYMTM 106 (398)
T ss_dssp GCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCC---TTCC---HHHHHHHHHHHHHHHCCCCCGG---GEEEES
T ss_pred CeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCC---CCCc---HHHHHHHHHHHHHHhCCCCChH---HEEEcc
Confidence 3455543332 367899999988775421 123332 1232 25667677778888885 333 224444
Q ss_pred CCHHHHHHHHHHhccCC-CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeE
Q 018300 176 SGSPANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKL 254 (358)
Q Consensus 176 SGt~A~~~a~~all~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~kl 254 (358)
+|++|+..++.++++|| |+|++.++.|.++.. .+...|. +++++++++++..+|+++|++.+.. ++++
T Consensus 107 g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~ 175 (398)
T 3ele_A 107 GAAASLSICFRALTSDAYDEFITIAPYFPEYKV--------FVNAAGA--RLVEVPADTEHFQIDFDALEERINA-HTRG 175 (398)
T ss_dssp SHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEECCCTTTSSCCHHHHHHTCCT-TEEE
T ss_pred CHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEEecCCcCCcCCHHHHHHHhCc-CCCE
Confidence 55779999999999999 999999886655421 2344565 4555556655568999999998864 7888
Q ss_pred EEEcCCCCC--CCCC---HHHHHHHHHH------cCCEEEEeccccccccccC-CccCCCC--CCcEEEEcCcCcC--cc
Q 018300 255 IIAGASAYP--RDFD---YPRMRQIADA------VGALLMMDMAHISGLVAAS-VVADPFK--YCDVVTTTTHKSL--RG 318 (358)
Q Consensus 255 Ii~~~s~~~--~~~d---l~~I~~ia~e------~g~~livD~Ah~~Gl~~~g-~~~~pl~--gaDiv~~S~hK~L--~G 318 (358)
|++..+++| ...+ +++|+++|++ +|+++++|++|.. +...+ ..+...+ +.++++.|+||++ +|
T Consensus 176 v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 254 (398)
T 3ele_A 176 VIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYRE-IVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPG 254 (398)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTT-CBCTTCCCCCGGGTCSSEEEEEESTTTSSCTT
T ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccc-cccCCCCcCChHhhcCCeEEEEehhhcCCCcc
Confidence 888665554 4666 6777799999 9999999999874 33333 2222222 4568899999997 56
Q ss_pred CcEEEEEEeCCCC
Q 018300 319 PRGGMIFFKKDPV 331 (358)
Q Consensus 319 p~GG~I~~~~~~~ 331 (358)
.|.|+++++++.+
T Consensus 255 ~r~G~~~~~~~~~ 267 (398)
T 3ele_A 255 ERIGYVLVPDEVY 267 (398)
T ss_dssp TCCEEEECCTTST
T ss_pred ceeEEEEEcchhh
Confidence 7789999988643
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=161.88 Aligned_cols=169 Identities=22% Similarity=0.249 Sum_probs=125.0
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
+++..+++ ++++++++|.+. .++++||++|+..++.+++++||+|++.++.|++..... .......|
T Consensus 64 ~~~~~~~l----~~~la~~~g~~~-----~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~----~~~~~~~g 130 (392)
T 3qhx_A 64 GNPTRTAL----EAALAAVEDAAF-----GRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLI----DKVFTGWN 130 (392)
T ss_dssp CCHHHHHH----HHHHHHHTTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHH----HHTGGGGT
T ss_pred CChHHHHH----HHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHH----HHHHHhcC
Confidence 44544444 456889999874 477889999999999999999999999998876643210 01112345
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
. ++..++.+ |++++++.+++ ++++|++..+++ |...|+++|.++|+++|+++++|++|+.+.. .
T Consensus 131 ~--~~~~v~~~------d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~-----~ 196 (392)
T 3qhx_A 131 V--EYTPVALA------DLDAVRAAIRP-TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL-----Q 196 (392)
T ss_dssp C--EEEEECTT------CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT-----C
T ss_pred c--EEEEeCCC------CHHHHHHhhCC-CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence 4 44443332 89999998864 789988876654 5688999999999999999999999975532 2
Q ss_pred CCCC-CCcEEEEcCcCcCccC---cEEEEEEeCCCCchhHHHHHHhh
Q 018300 300 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 300 ~pl~-gaDiv~~S~hK~L~Gp---~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
.+++ ++|+++.|+||+++|+ ++|+++++++ ++.+++..
T Consensus 197 ~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~-----~~~~~l~~ 238 (392)
T 3qhx_A 197 QPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDE-----ELDQSFAF 238 (392)
T ss_dssp CGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCH-----HHHHHHHH
T ss_pred ChHHhCCcEEEEcCccccCCCCCceEEEEEECcH-----HHHHHHHH
Confidence 4555 8999999999999764 5899999864 55555544
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.7e-17 Score=154.07 Aligned_cols=209 Identities=10% Similarity=0.028 Sum_probs=144.7
Q ss_pred hcccccccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHH
Q 018300 103 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (358)
Q Consensus 103 ~~i~lias~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A 180 (358)
..++|..+++. +++.|++++...+... .+||. .. .+ ..++++++++|+++++ .+++++|++|
T Consensus 17 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~-------~~---~~-~l~~~la~~~~~~~~~---i~~~~g~~~a 80 (354)
T 3ly1_A 17 NPIRINFNENPLGMSPKAQAAARDAVVKA--NRYAK-------NE---IL-MLGNKLAAHHQVEAPS---ILLTAGSSEG 80 (354)
T ss_dssp SCEECSSCCCSSCCCHHHHHHHHHTGGGT--TSCCH-------HH---HH-HHHHHHHHHTTSCGGG---EEEESHHHHH
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHhhC--cCCCC-------Cc---hH-HHHHHHHHHhCCChHH---EEEeCChHHH
Confidence 34555545453 6899999998776532 23321 22 22 3566789999987642 3445566789
Q ss_pred HHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh-cCCeEEEEcC
Q 018300 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-FRPKLIIAGA 259 (358)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~-~~~klIi~~~ 259 (358)
+..++.++++|||+|++.++.|.++.. .+...|. ++++++.++ ++.+|++++++.++. .++++|++..
T Consensus 81 ~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~-~~~~d~~~l~~~l~~~~~~~~v~l~~ 149 (354)
T 3ly1_A 81 IRAAIEAYASLEAQLVIPELTYGDGEH--------FAKIAGM--KVTKVKMLD-NWAFDIEGLKAAVAAYSGPSIVYLVN 149 (354)
T ss_dssp HHHHHHHHCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECCCT-TSCCCHHHHHHHHHTCSSCEEEEEES
T ss_pred HHHHHHHHhCCCCeEEECCCCchHHHH--------HHHHcCC--EEEEecCCC-CCCCCHHHHHHHhccCCCCCEEEEeC
Confidence 999999999999999999876665421 2344565 445555653 478999999999874 4789888765
Q ss_pred CCC--CCCCCHHHHHHHHHH--cCCEEEEeccccccccccCCccCCCC------CCcEEEEcCcCcC--ccCcEEEEEEe
Q 018300 260 SAY--PRDFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK------YCDVVTTTTHKSL--RGPRGGMIFFK 327 (358)
Q Consensus 260 s~~--~~~~dl~~I~~ia~e--~g~~livD~Ah~~Gl~~~g~~~~pl~------gaDiv~~S~hK~L--~Gp~GG~I~~~ 327 (358)
+++ |...+.+++.++++. +|+++++|++|. ++...+..+..+. +.+++++|+||++ +|.+.|+++++
T Consensus 150 p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 228 (354)
T 3ly1_A 150 PNNPTGTITPADVIEPWIASKPANTMFIVDEAYA-EFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAH 228 (354)
T ss_dssp SCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTG-GGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECC
T ss_pred CCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHH-HhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecC
Confidence 554 567888888888887 999999999988 4443332222221 3458899999997 46677999986
Q ss_pred CCCCchhHHHHHHhhccC
Q 018300 328 KDPVLGVELESAINNAVF 345 (358)
Q Consensus 328 ~~~~~~~~~~~~i~~~~f 345 (358)
+ ++.+++.....
T Consensus 229 ~------~~~~~~~~~~~ 240 (354)
T 3ly1_A 229 P------TVIALMGRYVA 240 (354)
T ss_dssp H------HHHHHHGGGTT
T ss_pred H------HHHHHHHHhcC
Confidence 6 67777766543
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.4e-17 Score=163.22 Aligned_cols=178 Identities=15% Similarity=0.101 Sum_probs=128.5
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc--------------CCCEEEecCCCCCcccc
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--------------PHDRIMGLDLPHGGHLS 207 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~--------------pGD~Vl~~~~~~ggh~s 207 (358)
..+...++|+.+.+|+++++|.+... ...+++.+||.||..++.++.. |+++|++++..|.+..
T Consensus 129 ~~p~~~~le~~~~~~l~~~~g~~~~~-~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~- 206 (511)
T 3vp6_A 129 IAPVFVLMEQITLKKMREIVGWSSKD-GDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK- 206 (511)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCSSS-CEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHH-
T ss_pred cCchHHHHHHHHHHHHHHHhCCCCCC-CceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHH-
Confidence 34566789999999999999998421 1245667888999988877643 5788998876544321
Q ss_pred cccccchhccccCCceE-EEEeceecCCCCCCCHHHHHHHhhhcC-----CeEEEEcCCC--CCCCCCHHHHHHHHHHcC
Q 018300 208 HGFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGASA--YPRDFDYPRMRQIADAVG 279 (358)
Q Consensus 208 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~iD~d~le~~i~~~~-----~klIi~~~s~--~~~~~dl~~I~~ia~e~g 279 (358)
+.+...|... ++..++++ +++.+|+++|++.+++.+ |++|++...+ +|...|+++|.++|+++|
T Consensus 207 -------~~~~~~g~g~~~~~~v~~d-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~ 278 (511)
T 3vp6_A 207 -------KAGAALGFGTDNVILIKCN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYN 278 (511)
T ss_dssp -------HHHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHT
T ss_pred -------HHHHHcCCCCCcEEEeecC-CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcC
Confidence 2334555411 23344455 357999999999986532 7777765433 577889999999999999
Q ss_pred CEEEEeccccccccccCCccCCC---CCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 280 ALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 280 ~~livD~Ah~~Gl~~~g~~~~pl---~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+++++|++|+.|..........+ .++|++++++||||.+|.| |+++.+++
T Consensus 279 ~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~ 332 (511)
T 3vp6_A 279 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK 332 (511)
T ss_dssp CEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST
T ss_pred CEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCH
Confidence 99999999998776433222222 2679999999999988866 78888775
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.9e-17 Score=158.50 Aligned_cols=236 Identities=11% Similarity=0.035 Sum_probs=154.5
Q ss_pred cccccccChHHHHHHHHHHHHhhhcccccccCC--CCcHHHHHHHhhhhhcc--cCCCCCCCcCCCCcHHHHHHHHHHHH
Q 018300 80 DYSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNK--YSEGLPGKRYYGGNEYIDELETLCQK 155 (358)
Q Consensus 80 ~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n--~~s~~V~~al~~~l~~~--~~~G~pg~r~~~G~~~~~~lE~~~~~ 155 (358)
++++...++.++..+.+... ...-+++..+++ ..++.|++++...+... ...+|+. ..|. .++++.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~---~~g~---~~l~~~la~ 88 (429)
T 1yiz_A 16 PKRYQGSTKSVWVEYIQLAA-QYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTR---GFGH---PRLVQALSK 88 (429)
T ss_dssp SSSCCCCTTCHHHHHHHHHH-HHCCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCC---SSCC---HHHHHHHHH
T ss_pred hHHhhhCCchHHHHHHHHhc-cCCEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCC---CCCc---HHHHHHHHH
Confidence 45666677777776655433 334566654433 35799999998876542 1123332 1122 356666777
Q ss_pred HHHHHcCCC--CCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC
Q 018300 156 RALAAFNLD--ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (358)
Q Consensus 156 ~la~lfg~~--~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~ 233 (358)
++.+.+|.+ ++ . ..+++.+|++|+..++.++++|||+|++.++.|.++.. .+...|.. ++.+++++
T Consensus 89 ~l~~~~g~~~~~~-~-~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~~--~~~~~~~~ 156 (429)
T 1yiz_A 89 LYSQLVDRTINPM-T-EVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEP--------MVKAAGGI--PRFIPLKP 156 (429)
T ss_dssp HHHHHHTSCCCTT-T-SEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCE--EEEEECBC
T ss_pred HHHHHhCCCCCCc-C-CEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHcCCE--EEEEeCCc
Confidence 777777853 32 0 12444556789999999999999999999876665421 23345653 44455554
Q ss_pred C---------CCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCC---CHHHHHHHHHHcCCEEEEeccccccccccCC-c
Q 018300 234 S---------TGLVDYDMLEKTAILFRPKLIIAGASAY--PRDF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-V 298 (358)
Q Consensus 234 ~---------~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~ 298 (358)
+ ++.+|+++|++.++ .++++|++..+++ |... ++++|.++|+++|+++++|++|+. +...+. .
T Consensus 157 ~~~~~~~~~~~~~~d~~~l~~~l~-~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~ 234 (429)
T 1yiz_A 157 NKTGGTISSADWVLDNNELEALFN-EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEH-MVFEPFEH 234 (429)
T ss_dssp CCSSSSEEGGGCBCCHHHHHHHCC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCTTSCC
T ss_pred ccccccccccCcccCHHHHHHHhc-cCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccc-cccCCCCC
Confidence 3 34689999999886 3788887765554 4455 489999999999999999999873 333221 1
Q ss_pred c--CCC--C-CCcEEEEcCcCcCc--cCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 299 A--DPF--K-YCDVVTTTTHKSLR--GPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 299 ~--~pl--~-gaDiv~~S~hK~L~--Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+ ..+ . +.|+++.|+||+++ |.|.|++++++ ++.+.+..
T Consensus 235 ~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~ 279 (429)
T 1yiz_A 235 IRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPE------ALLKNLQM 279 (429)
T ss_dssp CCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCH------HHHHHHHH
T ss_pred cChhhccCCcCceEEEecchhccCCCCcceEEEEeCH------HHHHHHHH
Confidence 1 112 1 57899999999874 55679999876 55555544
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.5e-18 Score=162.18 Aligned_cols=200 Identities=16% Similarity=0.137 Sum_probs=137.7
Q ss_pred CCCCcHHHHHHHhhhhhcccCCCCCCC-cCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-
Q 018300 111 ENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI- 188 (358)
Q Consensus 111 ~n~~s~~V~~al~~~l~~~~~~G~pg~-r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al- 188 (358)
....++.|++++.+.+.+... ..++. +.|. ... .....+++.+++++|++.+ ..+++.+|+.|+..++.++
T Consensus 25 ~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~y~--~~~-~~~~~l~~~la~~~g~~~~---~v~~~~g~t~a~~~~~~~~~ 97 (390)
T 1elu_A 25 QGILPTVALEAITAMYGYLQE-NGPFSIAANQ--HIQ-QLIAQLRQALAETFNVDPN---TITITDNVTTGCDIVLWGLD 97 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHHHH-HCSSSHHHHH--HHH-HHHHHHHHHHHHHTTSCGG---GEEEESSHHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHHHHHHHhc-cCCcchhhHH--HHH-HHHHHHHHHHHHHcCCCHH---HEEEeCChHHHHHHHHhCCC
Confidence 445678899999887654321 11110 0111 111 2233467789999998764 2355567788999999999
Q ss_pred ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC-CCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCC
Q 018300 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAGASAY--PRD 265 (358)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~ 265 (358)
++|||+|+++++.|.++... +. ......|. +++.+++++ +++.+|++++++.++. ++++|++..+++ |..
T Consensus 98 ~~~gd~vl~~~~~~~~~~~~-~~---~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~ 170 (390)
T 1elu_A 98 WHQGDEILLTDCEHPGIIAI-VQ---AIAARFGI--TYRFFPVAATLNQGDAAAVLANHLGP-KTRLVILSHLLWNTGQV 170 (390)
T ss_dssp CCTTCEEEEETTCCHHHHHH-HH---HHHHHHCC--EEEEECCGGGSSSSCHHHHHHTTCCT-TEEEEEEESBCTTTCCB
T ss_pred CCCCCEEEEecCcccHHHHH-HH---HHHHHhCc--EEEEEcCCCCCCccchHHHHHHhcCC-CceEEEEeccccCCcee
Confidence 89999999998876654211 00 01123455 344444542 3567999999998864 688888866554 568
Q ss_pred CCHHHHHHHHH----HcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 266 FDYPRMRQIAD----AVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 266 ~dl~~I~~ia~----e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
.|+++|.++|+ ++|+++++|++|+.|.. +..++ +.|++++|+||++.||.| |+++++++
T Consensus 171 ~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~ 236 (390)
T 1elu_A 171 LPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSL-----PLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGD 236 (390)
T ss_dssp CCHHHHHHHHHHCCSSSCCEEEEECTTTBTTB-----CCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTT
T ss_pred cCHHHHHHHHhhhhhhcCcEEEEEcccccCCc-----CCChhhcCCCEEEccccccccCCCceEEEEECHH
Confidence 89999999999 99999999999986643 22233 689999999998877766 99999875
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.6e-17 Score=158.43 Aligned_cols=237 Identities=15% Similarity=0.129 Sum_probs=141.1
Q ss_pred cccccccChHHHHHHHHHHHHh----hhcccccccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHH
Q 018300 80 DYSLGEADPEVCEIITKEKERQ----FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 153 (358)
Q Consensus 80 ~~~l~~~d~~~~~~i~~e~~~~----~~~i~lias~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~ 153 (358)
++++.++.++.+..+.+...+. ..-+++..+++. .++.|++++...+......+|+. ..|. .++++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~---~~g~---~~l~~~i 84 (412)
T 2x5d_A 11 FARIDRLPPYVFNITAELKMAARRRGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYST---SRGI---PRLRRAI 84 (412)
T ss_dssp ----------CHHHHHHHHHHHHHTTCCCEECSSCCCCSCCCHHHHHHHHHTC---------C---TTCC---HHHHHHH
T ss_pred hHHHhhcCchHHHHHHHHHHHHhhcCCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC---CCCc---HHHHHHH
Confidence 4455555665555444333221 133566544442 58899999987765421223322 1122 3566666
Q ss_pred HHHHHHHcCCC--CCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee
Q 018300 154 QKRALAAFNLD--ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (358)
Q Consensus 154 ~~~la~lfg~~--~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~ 231 (358)
.+++.+.+|.+ +++ ..+++++|++|+..++.++++|||+|++.++.|.++.. .+...|. +++.+++
T Consensus 85 a~~~~~~~g~~~~~~~--~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~ 152 (412)
T 2x5d_A 85 SHWYRDRYDVQIDPES--EAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIY--------GAVIAGA--QVRSVPL 152 (412)
T ss_dssp HHHHHHHHCCCCCTTT--SEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHHTC--EEEEEEC
T ss_pred HHHHHHHhCCCCCCCc--CEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEeec
Confidence 66666666863 211 13455667789999999999999999999886655421 2234455 4445556
Q ss_pred cCCCC-CCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCC---HHHHHHHHHHcCCEEEEeccccccccccCC-cc--CCC
Q 018300 232 DESTG-LVDYDMLEKTAILFRPKLIIAGASAY--PRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VA--DPF 302 (358)
Q Consensus 232 ~~~~~-~iD~d~le~~i~~~~~klIi~~~s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~--~pl 302 (358)
+++++ .+|++++++.+. .++++|++..+++ |...+ +++|.++|+++|+++++|++|+.+.. .+. .+ ..+
T Consensus 153 ~~~~~~~~d~~~l~~~i~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~-~g~~~~~~~~~ 230 (412)
T 2x5d_A 153 VPGIDFFNELERAIRESI-PKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVY-DGWKAPSIMQV 230 (412)
T ss_dssp STTSCHHHHHHHHHHTEE-SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC-TTCCCCCGGGS
T ss_pred CCccCCCCCHHHHHHhcc-cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEecccccccc-CCCCCCChhhc
Confidence 64423 478999999876 4788888765555 44554 68899999999999999999985432 221 11 112
Q ss_pred C---CCcEEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 303 K---YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 303 ~---gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+ +.|++++|+||++ +|.+.|++++++ ++.+++..
T Consensus 231 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~ 269 (412)
T 2x5d_A 231 PGAKDIAVEFFTLSKSYNMAGWRIGFMVGNP------ELVSALAR 269 (412)
T ss_dssp TTGGGTEEEEEECC-CCSCTTSCCEEEEECH------HHHHHHHH
T ss_pred cCccCcEEEEecCccccCCcccceEEEEcCH------HHHHHHHH
Confidence 2 4679999999998 466779999876 45555543
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.7e-18 Score=159.89 Aligned_cols=190 Identities=21% Similarity=0.198 Sum_probs=127.3
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pG 192 (358)
++++.+++++....... . .|+..+...++ ++++++++|.+. .++++||++|+..++.++++||
T Consensus 15 ~p~~~~~~a~~~~~~~~-------~-~y~~~~~~~~l----~~~la~~~g~~~-----~~~~~~gt~a~~~~~~~~~~~g 77 (347)
T 1jg8_A 15 KPTEEMRKAMAQAEVGD-------D-VYGEDPTINEL----ERLAAETFGKEA-----ALFVPSGTMGNQVSIMAHTQRG 77 (347)
T ss_dssp CCCHHHHHHHHTCCCCC-------G-GGTCCHHHHHH----HHHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTT
T ss_pred CCCHHHHHHHhcCCCCC-------c-ccCCChHHHHH----HHHHHHHhCCce-----EEEecCcHHHHHHHHHHhcCCC
Confidence 56788999986532111 0 12223333344 456888999864 3677899999999999999999
Q ss_pred CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc-----CCeEEEEcCCCC---CC
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAY---PR 264 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~-----~~klIi~~~s~~---~~ 264 (358)
|+|+++++.|.+.+... ......|. +++++ .+ +++.+|++++++.+++. ++|+|++..+++ |.
T Consensus 78 d~Vl~~~~~~~~~~~~~-----~~~~~~g~--~~~~v-~~-~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~ 148 (347)
T 1jg8_A 78 DEVILEADSHIFWYEVG-----AMAVLSGV--MPHPV-PG-KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGR 148 (347)
T ss_dssp CEEEEETTCHHHHSSTT-----HHHHHTCC--EEEEE-CE-ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSB
T ss_pred CEEEEcCcchhhhcccc-----chhhccCe--EEEEe-cC-CCCccCHHHHHHHhccccccccCceEEEEeccccccCCc
Confidence 99999987554322110 01233455 34444 22 35678999999988642 578888865553 55
Q ss_pred CCC---HHHHHHHHHHcCCEEEEecccccccc-ccCCccCCCC-CCcEEEEcCcCcCccCcEEEEEEeC
Q 018300 265 DFD---YPRMRQIADAVGALLMMDMAHISGLV-AASVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKK 328 (358)
Q Consensus 265 ~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~-~~g~~~~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~ 328 (358)
..+ +++|.++|+++|+++++|++|..+.. ..+..+.++. ++|.+++|+||+|++|.|++++.++
T Consensus 149 ~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~ 217 (347)
T 1jg8_A 149 VVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDR 217 (347)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECH
T ss_pred cCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCceEEEEcCH
Confidence 555 57888999999999999999865421 1222112222 7898889999999888777777665
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=157.94 Aligned_cols=208 Identities=13% Similarity=0.033 Sum_probs=142.2
Q ss_pred hcccccccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHH
Q 018300 103 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (358)
Q Consensus 103 ~~i~lias~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A 180 (358)
.-++|-..++. +++.|++++...+... .+|+... + .+ .++++++++|++.++ .+++++|++|
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~~---~----~~----lr~~la~~~~~~~~~---v~~~~g~~~a 94 (365)
T 3get_A 31 EVIKLASNENPFGTPPKAIECLRQNANKA--HLYPDDS---M----IE----LKSTLAQKYKVQNEN---IIIGAGSDQV 94 (365)
T ss_dssp CCEECSSCCCTTCSCHHHHHHHHHHGGGT--TSCCCTT---C----HH----HHHHHHHHHTCCGGG---EEEESSHHHH
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHhh--ccCCCCC---h----HH----HHHHHHHHhCCCcce---EEECCCHHHH
Confidence 45666655554 6899999998876532 3454311 1 13 355678899987642 3445566779
Q ss_pred HHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCC
Q 018300 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (358)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s 260 (358)
+..++.++++|||+|++.++.|.++.. .+...|. +++.++++++++ +|++++++.++ .++++|++..+
T Consensus 95 ~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~-~d~~~l~~~l~-~~~~~v~~~~p 162 (365)
T 3get_A 95 IEFAIHSKLNSKNAFLQAGVTFAMYEI--------YAKQCGA--KCYKTQSITHNL-DEFKKLYETHK-DEIKLIFLCLP 162 (365)
T ss_dssp HHHHHHHHCCTTCEEEECSSCCTHHHH--------HHHHHTC--EEEECSSSSCCH-HHHHHHHHHTT-TTEEEEEEESS
T ss_pred HHHHHHHHhCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEEecCCCCC-CCHHHHHHHhC-CCCCEEEEcCC
Confidence 999999999999999999876654321 2334565 455555533567 99999999886 47898888655
Q ss_pred CC--CCCCCHHHHHHHHH--HcCCEEEEecccccccc--ccCCccCCC---C--CCcEEEEcCcCcC--ccCcEEEEEEe
Q 018300 261 AY--PRDFDYPRMRQIAD--AVGALLMMDMAHISGLV--AASVVADPF---K--YCDVVTTTTHKSL--RGPRGGMIFFK 327 (358)
Q Consensus 261 ~~--~~~~dl~~I~~ia~--e~g~~livD~Ah~~Gl~--~~g~~~~pl---~--gaDiv~~S~hK~L--~Gp~GG~I~~~ 327 (358)
++ |...+.+++.++++ ++|+++++|++|+.+.. .++.....+ + +.++++.|+||++ +|.+.|+++++
T Consensus 163 ~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 242 (365)
T 3get_A 163 NNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIAN 242 (365)
T ss_dssp CTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEEC
T ss_pred CCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcC
Confidence 54 56889999888888 67999999999984331 221111111 1 4568899999996 56678999996
Q ss_pred CCCCchhHHHHHHhhcc
Q 018300 328 KDPVLGVELESAINNAV 344 (358)
Q Consensus 328 ~~~~~~~~~~~~i~~~~ 344 (358)
+ ++.+++....
T Consensus 243 ~------~~~~~~~~~~ 253 (365)
T 3get_A 243 A------NIISAFYKLR 253 (365)
T ss_dssp H------HHHHHHHHHS
T ss_pred H------HHHHHHHHhc
Confidence 5 6777776543
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=154.97 Aligned_cols=237 Identities=16% Similarity=0.113 Sum_probs=149.0
Q ss_pred cccccccChHHHHHHHHHHHHh----hhcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHH
Q 018300 80 DYSLGEADPEVCEIITKEKERQ----FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 153 (358)
Q Consensus 80 ~~~l~~~d~~~~~~i~~e~~~~----~~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~ 153 (358)
+.++....+..+..+.+...+. ...++|-..++ .+++.+++++...+.... .+|+.. .|. .++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~---~g~---~~lr~~i 77 (385)
T 1b5p_A 5 SRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGK-TKYAPP---AGI---PELREAL 77 (385)
T ss_dssp CHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CSCCCT---TCC---HHHHHHH
T ss_pred hhHHhhcCcchHHHHHHHHHHHHhcCCCEEEecCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC---CCC---HHHHHHH
Confidence 3445555554443333332221 23455544443 357889999887764422 234321 122 3566666
Q ss_pred HHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC
Q 018300 154 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (358)
Q Consensus 154 ~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~ 233 (358)
.+++.+.+|.+.+ ..-.+++++|++|+..++.++++|||+|+++++.|.++.. .+...|. +++.+++++
T Consensus 78 a~~~~~~~g~~~~-~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~ 146 (385)
T 1b5p_A 78 AEKFRRENGLSVT-PEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPE--------MVRFAGG--VVVEVETLP 146 (385)
T ss_dssp HHHHHHTTCCCCC-GGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEECCG
T ss_pred HHHHHHHhCCCCC-hHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEeecCc
Confidence 7777777775421 1112444556779999999999999999999887655421 2345565 445555654
Q ss_pred -CCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccC--CCC-C
Q 018300 234 -STGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-Y 304 (358)
Q Consensus 234 -~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~--pl~-g 304 (358)
++..+|++++++.+.. ++|+|++..+++| ...+ +++|.++|+++|++|++|++|+- +...+..++ .++ +
T Consensus 147 ~~~~~~d~~~l~~~l~~-~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~ 224 (385)
T 1b5p_A 147 EEGFVPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEH-LLYEGEHFSPGRVAPE 224 (385)
T ss_dssp GGTTCCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBSSSCCCCGGGTCTT
T ss_pred ccCCCCCHHHHHHhcCC-CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchh-cccCCCCCCHHHcCCC
Confidence 3457999999998764 6888877655554 4544 88999999999999999999874 333321111 112 3
Q ss_pred CcEEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 305 CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 305 aDiv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
.++++.|++|++ +|.|.|++++++ ++.+++..
T Consensus 225 ~~i~~~s~SK~~~~~G~RiG~~~~~~------~~~~~l~~ 258 (385)
T 1b5p_A 225 HTLTVNGAAKAFAMTGWRIGYACGPK------EVIKAMAS 258 (385)
T ss_dssp TEEEEEESTTTTTCGGGCCEEEECCH------HHHHHHHH
T ss_pred CEEEEEechhhcCCcccceEEEEeCH------HHHHHHHH
Confidence 468899999997 466789999876 45555544
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=163.74 Aligned_cols=170 Identities=21% Similarity=0.172 Sum_probs=124.7
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
|.+..++++ +++++++|.+. .+.+++|++|+..++.++++|||+|+++++.|+++..... ..+...|
T Consensus 60 ~~~~~~~l~----~~ia~~~g~~~-----~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~----~~~~~~g 126 (404)
T 1e5e_A 60 GNPTVSNLE----GKIAFLEKTEA-----CVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFE----HALTKFG 126 (404)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHH----THHHHTT
T ss_pred cChHHHHHH----HHHHHHhCCCc-----EEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH----HHHHHcC
Confidence 555544444 45788899863 4678899999999999999999999999987766432100 0123456
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHH-cCCEEEEeccccccccccCCc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADA-VGALLMMDMAHISGLVAASVV 298 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e-~g~~livD~Ah~~Gl~~~g~~ 298 (358)
. ++..++.+ |++++++.+++ ++|+|++..+++ |...|+++|.++|++ +|+++++|++|+.+..
T Consensus 127 ~--~~~~v~~~------d~~~l~~~i~~-~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~----- 192 (404)
T 1e5e_A 127 I--QVDFINTA------IPGEVKKHMKP-NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMI----- 192 (404)
T ss_dssp C--EEEEECTT------STTHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTT-----
T ss_pred C--EEEEECCC------CHHHHHHhcCC-CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhh-----
Confidence 5 34444332 78899998864 789998876654 568899999999999 9999999999986542
Q ss_pred cCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhhc
Q 018300 299 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 299 ~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
..+++ ++|++++|+||++.+|. ||+++++++ .+.+++...
T Consensus 193 ~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~-----~~~~~l~~~ 236 (404)
T 1e5e_A 193 TNPVDFGVDVVVHSATKYINGHTDVVAGLICGKAD-----LLQQIRMVG 236 (404)
T ss_dssp CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHH-----HHHHHHHTC
T ss_pred CCccccCCEEEEEcCccccCCCCCCeEEEEEECHH-----HHHHHHHHH
Confidence 13445 79999999999997764 599998874 333366654
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-17 Score=162.36 Aligned_cols=168 Identities=20% Similarity=0.200 Sum_probs=124.1
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
+++..+++| +++++++|.+. .+.++||++|+..++. ++++||+|+++++.|+++..... ..+...|
T Consensus 65 ~~p~~~~l~----~~la~~~g~~~-----~i~~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~----~~~~~~G 130 (403)
T 3cog_A 65 GNPTRNCLE----KAVAALDGAKY-----CLAFASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFR----QVASEFG 130 (403)
T ss_dssp -CHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHH----HTGGGGT
T ss_pred CCchHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHH----HHHHHcC
Confidence 345444554 45788999873 4778999999999999 89999999999988776432100 0123345
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcC-CEEEEeccccccccccCCc
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVG-ALLMMDMAHISGLVAASVV 298 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g-~~livD~Ah~~Gl~~~g~~ 298 (358)
. ++..++.+ |++++++.++. ++++|++..+++ |...|+++|.++|+++| +++++|++|+.+..
T Consensus 131 ~--~v~~v~~~------d~~~l~~~i~~-~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~----- 196 (403)
T 3cog_A 131 L--KISFVDCS------KIKLLEAAITP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYF----- 196 (403)
T ss_dssp C--EEEEECTT------SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTT-----
T ss_pred C--EEEEECCC------CHHHHHHhcCc-CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCccccc-----
Confidence 5 44444332 89999998864 789998876665 46889999999999999 99999999986542
Q ss_pred cCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhh
Q 018300 299 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 299 ~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
..+++ ++|++++|+||+|+||. +|+++++++ ++.+++..
T Consensus 197 ~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~-----~l~~~l~~ 239 (403)
T 3cog_A 197 QRPLALGADISMYSATKYMNGHSDVVMGLVSVNCE-----SLHNRLRF 239 (403)
T ss_dssp CCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCH-----HHHHHHHH
T ss_pred CCccccCCeEEEEcChhhccCCCCCeEEEEEECcH-----HHHHHHHH
Confidence 24556 89999999999999875 599998754 56555544
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=155.19 Aligned_cols=214 Identities=14% Similarity=0.065 Sum_probs=141.4
Q ss_pred hcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHH
Q 018300 103 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (358)
Q Consensus 103 ~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A 180 (358)
.-+++...++ ..++.+.+++...+... ..+|+. ..|. .++++.+.+++.+.+|.+.. ....+++++|++|
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~---~~g~---~~l~~~la~~~~~~~g~~~~-~~~v~~~~g~~~a 102 (388)
T 1j32_A 31 DVCSFSAGEPDFNTPKHIVEAAKAALEQG-KTRYGP---AAGE---PRLREAIAQKLQRDNGLCYG-ADNILVTNGGKQS 102 (388)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCC---TTCC---HHHHHHHHHHHHHHHCCCCC-GGGEEEESHHHHH
T ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHhcC-CCCCCC---CCCC---HHHHHHHHHHHHHhcCCCCC-hhhEEEcCCHHHH
Confidence 3455554444 35789999988776432 123332 1122 36777777778877786421 1112344456789
Q ss_pred HHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhhcCCeEEEEcC
Q 018300 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGA 259 (358)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~~~~klIi~~~ 259 (358)
+..++.++++|||+|++.++.|.++.. .+...|.. ++.++.+++ ++.+|+++|++.++. ++++|++..
T Consensus 103 ~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~--~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~ 171 (388)
T 1j32_A 103 IFNLMLAMIEPGDEVIIPAPFWVSYPE--------MVKLAEGT--PVILPTTVETQFKVSPEQIRQAITP-KTKLLVFNT 171 (388)
T ss_dssp HHHHHHHHCCTTCEEEEESSCCTHHHH--------HHHHTTCE--EEEECCCGGGTTCCCHHHHHHHCCT-TEEEEEEES
T ss_pred HHHHHHHhcCCCCEEEEcCCCChhHHH--------HHHHcCCE--EEEecCCcccCCCCCHHHHHHhcCc-CceEEEEeC
Confidence 999999999999999999887665421 23345654 444455532 357899999998864 688887765
Q ss_pred CCC--CCCC---CHHHHHHHHHHcCCEEEEeccccccccccCC-ccC--CCC----CCcEEEEcCcCcC--ccCcEEEEE
Q 018300 260 SAY--PRDF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VAD--PFK----YCDVVTTTTHKSL--RGPRGGMIF 325 (358)
Q Consensus 260 s~~--~~~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~~--pl~----gaDiv~~S~hK~L--~Gp~GG~I~ 325 (358)
+++ |... ++++|.++|+++|+++++|++|+.+ ...+. .++ .++ +.|+++.|+||++ +|.+.|+++
T Consensus 172 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~ 250 (388)
T 1j32_A 172 PSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKI-LYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLA 250 (388)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTC-BCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEE
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhc-ccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEE
Confidence 554 4454 4899999999999999999998743 33322 111 121 4689999999998 456679999
Q ss_pred EeCCCCchhHHHHHHhh
Q 018300 326 FKKDPVLGVELESAINN 342 (358)
Q Consensus 326 ~~~~~~~~~~~~~~i~~ 342 (358)
+++ ++.+++..
T Consensus 251 ~~~------~~~~~l~~ 261 (388)
T 1j32_A 251 GPV------PLVKAATK 261 (388)
T ss_dssp CCH------HHHHHHHH
T ss_pred eCH------HHHHHHHH
Confidence 876 45555543
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-17 Score=156.80 Aligned_cols=209 Identities=14% Similarity=0.064 Sum_probs=141.8
Q ss_pred hcccccccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC-CCCCCcceEEeCCCHH
Q 018300 103 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGSP 179 (358)
Q Consensus 103 ~~i~lias~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~-~~~~~~v~V~~~SGt~ 179 (358)
.-++|-..++. +++.|++++...+.+....+|+.. + ..+ .++++++++|+ +++ ..+++++|++
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~----~---~~~----l~~~la~~~g~~~~~---~i~~~~g~t~ 96 (367)
T 3euc_A 31 GLVKLDAMENPYRLPPALRSELAARLGEVALNRYPVP----S---SEA----LRAKLKEVMQVPAGM---EVLLGNGSDE 96 (367)
T ss_dssp TCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCCC----C---HHH----HHHHHHHHHTCCTTC---EEEEEEHHHH
T ss_pred CeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC----c---HHH----HHHHHHHHhCCCCcc---eEEEcCCHHH
Confidence 34666555554 689999999887764322344331 1 123 45568889998 443 1234445667
Q ss_pred HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC
Q 018300 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (358)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~ 259 (358)
|+..++.++++|||+|++.++.|.++.. .+...|. +++.+++++ ++.+|++++++.++..++++|++..
T Consensus 97 a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~v~~~~ 165 (367)
T 3euc_A 97 IISMLALAAARPGAKVMAPVPGFVMYAM--------SAQFAGL--EFVGVPLRA-DFTLDRGAMLAAMAEHQPAIVYLAY 165 (367)
T ss_dssp HHHHHHHHTCCTTCEEEEEESCSCCSCH--------HHHTTTC--EEEEEECCT-TSCCCHHHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHHHcCCCCEEEEcCCCHHHHHH--------HHHHcCC--eEEEecCCC-CCCCCHHHHHHHhhccCCCEEEEcC
Confidence 9999999999999999998876655321 2344565 445555664 5689999999998765789888866
Q ss_pred CCCC--CCC---CHHHHHHHHHHc--CCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCc-CccCcEEEEEEeCC
Q 018300 260 SAYP--RDF---DYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKS-LRGPRGGMIFFKKD 329 (358)
Q Consensus 260 s~~~--~~~---dl~~I~~ia~e~--g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~-L~Gp~GG~I~~~~~ 329 (358)
++++ ... ++++|.++|+++ |+++++|++|+. +...+..+ .++ +.++++.|+||+ ++|.+.|++++++
T Consensus 166 ~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~-~~~~~~~~-~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~- 242 (367)
T 3euc_A 166 PNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQP-FAQESWMS-RLTDFGNLLVMRTVSKLGLAGIRLGYVAGDP- 242 (367)
T ss_dssp SCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCC-SSSCCSGG-GGGTCTTEEEEEECCCTTSCSCCEEEEEECH-
T ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchh-hcccchHH-HHhhCCCEEEEecchhhcccccCceeeeeCH-
Confidence 5554 444 477888889999 999999999873 33222111 122 456889999998 3456779999876
Q ss_pred CCchhHHHHHHhhcc
Q 018300 330 PVLGVELESAINNAV 344 (358)
Q Consensus 330 ~~~~~~~~~~i~~~~ 344 (358)
++.+++....
T Consensus 243 -----~~~~~~~~~~ 252 (367)
T 3euc_A 243 -----QWLEQLDKVR 252 (367)
T ss_dssp -----HHHHHHGGGC
T ss_pred -----HHHHHHHHhC
Confidence 6777776643
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-17 Score=159.45 Aligned_cols=230 Identities=11% Similarity=0.036 Sum_probs=152.7
Q ss_pred hcccccccChHHHHHHHHHHHHhhhcccccccCC--CCcHHHHHHHhhhhhccc-CCCCCCCcCCCCcHHHHHHHHHHHH
Q 018300 79 VDYSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQK 155 (358)
Q Consensus 79 ~~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n--~~s~~V~~al~~~l~~~~-~~G~pg~r~~~G~~~~~~lE~~~~~ 155 (358)
+++++..+++..+..+.+... ...-|+|-.+++ .+++.|++++...+.... ..+|+.. .|. .++++.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~---~g~---~~lr~~la~ 78 (422)
T 3fvs_A 6 QARRLDGIDYNPWVEFVKLAS-EHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKT---FGY---PPLTKILAS 78 (422)
T ss_dssp SCGGGTTCCCCHHHHHHHHHH-TSCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCT---TCC---HHHHHHHHH
T ss_pred HHHHhhccCccHHHHHHHHhh-cCCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCC---CCC---HHHHHHHHH
Confidence 456777888877665544332 234556654443 478999999988776432 2234331 122 256666777
Q ss_pred HHHHHcCCCCCCC-cceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC-
Q 018300 156 RALAAFNLDENKW-GVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE- 233 (358)
Q Consensus 156 ~la~lfg~~~~~~-~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~- 233 (358)
++.+.+|.+.+ . ...+++++|++|+..++.++++|||+|++.++.|.++.. .+...|.. ++++++++
T Consensus 79 ~~~~~~g~~~~-~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~~--~~~~~~~~~ 147 (422)
T 3fvs_A 79 FFGELLGQEID-PLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEP--------MTMMAGGR--PVFVSLKPG 147 (422)
T ss_dssp HHHHHHTCCCC-HHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCE--EEEEECBCC
T ss_pred HHHHhhCCCCC-CCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHH--------HHHHcCCE--EEEEecccc
Confidence 78878886532 1 013445566779999999999999999999887665421 23345654 44444543
Q ss_pred ----------CCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCC---CHHHHHHHHHHcCCEEEEeccccccccccCCc
Q 018300 234 ----------STGLVDYDMLEKTAILFRPKLIIAGASAYP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV 298 (358)
Q Consensus 234 ----------~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~ 298 (358)
.+..+|++++++.++. ++++|++..++++ ... ++++|.++|+++|+++++|++|+. +...+..
T Consensus 148 ~~~~G~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~ 225 (422)
T 3fvs_A 148 PIQNGELGSSSNWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQW-MVYDGHQ 225 (422)
T ss_dssp CCCSSSCCBGGGSBCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCTTCC
T ss_pred cccccccccccCCCCCHHHHHhhcCC-CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchh-hccCCCC
Confidence 2346899999998864 6888877666654 455 589999999999999999999873 3433322
Q ss_pred cCCC---C---CCcEEEEcCcCcC--ccCcEEEEEEeC
Q 018300 299 ADPF---K---YCDVVTTTTHKSL--RGPRGGMIFFKK 328 (358)
Q Consensus 299 ~~pl---~---gaDiv~~S~hK~L--~Gp~GG~I~~~~ 328 (358)
+.++ + +.++++.|++|++ +|.+.|++++++
T Consensus 226 ~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~ 263 (422)
T 3fvs_A 226 HISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD 263 (422)
T ss_dssp CCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCH
T ss_pred CCChhhcccccCcEEEEecchhccCCccceEEEEEeCH
Confidence 2222 1 3458899999997 467779999877
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=165.56 Aligned_cols=168 Identities=18% Similarity=0.135 Sum_probs=122.5
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
+|.+.|+ +++..+++|+ ++++++|.+. .+.++||+.|+..++.++++|||+|++.++.|++......
T Consensus 73 ~~~y~r~--~~p~~~~le~----~lA~l~g~~~-----~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~-- 139 (430)
T 3ri6_A 73 GHVYSRS--SNPTVEDLEQ----RLKNLTGALG-----VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQ-- 139 (430)
T ss_dssp ---------CCHHHHHHHH----HHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH--
T ss_pred CccccCC--CCHHHHHHHH----HHHHHHCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH--
Confidence 4444443 4565566654 5788999875 3678899999999999999999999999987776532110
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~ 290 (358)
..+...|. ++..++.+ |++++++.++. ++|+|++..+++ +...|+++|.++|+++|++|++|++|+.
T Consensus 140 --~~~~~~G~--~~~~v~~~------d~~~l~~ai~~-~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~ 208 (430)
T 3ri6_A 140 --KTLPSFGI--EVRFVDVM------DSLAVEHACDE-TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTP 208 (430)
T ss_dssp --THHHHTTC--EEEEECTT------CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSC
T ss_pred --HHHHHcCC--EEEEeCCC------CHHHHHHhhCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcc
Confidence 01234465 44443332 89999998864 789998876654 5688999999999999999999999986
Q ss_pred cccccCCccCCCC-CCcEEEEcCcCcCccC---cEEEEEEeCC
Q 018300 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKD 329 (358)
Q Consensus 291 Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp---~GG~I~~~~~ 329 (358)
+.. ..+++ |+|++++|++|+|.|+ .||+++++..
T Consensus 209 ~~~-----~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~ 246 (430)
T 3ri6_A 209 PYL-----LEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGL 246 (430)
T ss_dssp TTT-----CCGGGGTCSEEEEECCCEEETTEEECCEEEEECSC
T ss_pred ccc-----CChHHcCCEEEEECCcccccCCCCceEEEEEECCh
Confidence 643 34555 8999999999999887 6788886543
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=166.22 Aligned_cols=199 Identities=16% Similarity=0.098 Sum_probs=139.0
Q ss_pred cHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceEEeCCCHHHHHHHHHHhcc---
Q 018300 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAILK--- 190 (358)
Q Consensus 115 s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~-~~~~~v~V~~~SGt~A~~~a~~all~--- 190 (358)
++.+.+++.+.+.. +...++. .+...+...++|+.+++++++++|++ ..+ ..+++++|++|+..++.++.+
T Consensus 77 ~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~l~~~~~~~la~~~g~~~~~~--~~~~~~ggt~a~~~a~~a~~~~~~ 151 (497)
T 3mc6_A 77 GDDLIHLQTIAYEK-YCVANQL--HPDVFPAVRKMESEVVSMVLRMFNAPSDTG--CGTTTSGGTESLLLACLSAKMYAL 151 (497)
T ss_dssp CHHHHHHHHHHHHH-TSSCBTT--CTTTCHHHHHHHHHHHHHHHHHTTCCTTTC--CEEEESSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH-HhhcCCC--CcccChHHHHHHHHHHHHHHHHhCCCCCCC--eEEEcCcHHHHHHHHHHHHHHHHH
Confidence 46777777665543 2111222 12334456688888999999999998 222 245667788899999998865
Q ss_pred --CC---CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--CC
Q 018300 191 --PH---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA--YP 263 (358)
Q Consensus 191 --pG---D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~--~~ 263 (358)
+| |+|+++.+.|.++. +.+...|.. ++.++++++++.+|+++|++.+++ ++++|++..++ +|
T Consensus 152 ~~~g~~~~~Vi~~~~~h~~~~--------~~~~~~G~~--~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG 220 (497)
T 3mc6_A 152 HHRGITEPEIIAPVTAHAGFD--------KAAYYFGMK--LRHVELDPTTYQVDLGKVKKFINK-NTVLLVGSAPNFPHG 220 (497)
T ss_dssp HHSCCSSCEEEEETTSCHHHH--------HHHHHSCCE--EEEECBCTTTCSBCTTTTGGGCCS-SEEEEEEETTCTTTC
T ss_pred hcCCCCCceEEEeCCccHHHH--------HHHHHcCCe--EEEEecCcccCcCCHHHHHHHHhh-CCEEEEEECCCCCCC
Confidence 56 99999886554431 234456764 445556644678999999998865 68888886655 56
Q ss_pred CCCCHHHHHHHHHHcCCEEEEeccccccccc----c--CCc-cCCC--CCCcEEEEcCcCcCccCc-EEEEEEeCC
Q 018300 264 RDFDYPRMRQIADAVGALLMMDMAHISGLVA----A--SVV-ADPF--KYCDVVTTTTHKSLRGPR-GGMIFFKKD 329 (358)
Q Consensus 264 ~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~----~--g~~-~~pl--~gaDiv~~S~hK~L~Gp~-GG~I~~~~~ 329 (358)
...|+++|.++|+++|+++++|++|+.+... . +.. +..+ .++|++++|+||++.||. .|+++++++
T Consensus 221 ~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~ 296 (497)
T 3mc6_A 221 IADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNS 296 (497)
T ss_dssp CCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSH
T ss_pred cCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCH
Confidence 7889999999999999999999999854332 0 111 1112 289999999999986665 488888874
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=155.27 Aligned_cols=203 Identities=14% Similarity=0.056 Sum_probs=133.4
Q ss_pred hhcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceEEeCCC
Q 018300 102 FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG 177 (358)
Q Consensus 102 ~~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~--~~~~~~v~V~~~SG 177 (358)
+.-+++-.+++ .+++.|++++...+.+.. .+|+.. .|. .++++.+.+++.+.+|. +++ ..+++++|
T Consensus 31 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~y~~~---~g~---~~lr~~ia~~~~~~~g~~~~~~---~v~~t~g~ 100 (391)
T 3h14_A 31 RRIIHMEVGQPGTGAPRGAVEALAKSLETDA-LGYTVA---LGL---PALRQRIARLYGEWYGVDLDPG---RVVITPGS 100 (391)
T ss_dssp CCCEECCCSSCSSCSCHHHHHHHHHHHC--------------CC---HHHHHHHHHHHHHHHCCCCCGG---GEEEESSH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC---CCh---HHHHHHHHHHHHHHhCCCCCHH---HEEEecCh
Confidence 35566655544 347889999988765422 233321 122 35666667777777774 333 23445566
Q ss_pred HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC-CCCCHHHHHHHhhhcCCeEEE
Q 018300 178 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLII 256 (358)
Q Consensus 178 t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~iD~d~le~~i~~~~~klIi 256 (358)
++|+..++.++++|||+|++.++.|.++.. .+...|.. +.++++++++ ..+|++++++. ++++|+
T Consensus 101 ~~al~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~g~~--~~~v~~~~~~~~~~d~~~l~~~----~~~~v~ 166 (391)
T 3h14_A 101 SGGFLLAFTALFDSGDRVGIGAPGYPSYRQ--------ILRALGLV--PVDLPTAPENRLQPVPADFAGL----DLAGLM 166 (391)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHTTCE--EEEEECCGGGTTSCCHHHHTTS----CCSEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCccHHH--------HHHHcCCE--EEEeecCcccCCCCCHHHHHhc----CCeEEE
Confidence 789999999999999999998876655421 23445654 4455555433 36899998875 688887
Q ss_pred EcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcC--ccCcEEEEEEe
Q 018300 257 AGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFK 327 (358)
Q Consensus 257 ~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L--~Gp~GG~I~~~ 327 (358)
+..++++ ...+ +++|.++|+++|+++++|++|+. +...+......+ ..++++.|++|++ +|.+.|+++++
T Consensus 167 i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 245 (391)
T 3h14_A 167 VASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHG-IEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVP 245 (391)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECC
T ss_pred ECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchh-cccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeC
Confidence 7666554 4555 88899999999999999999873 333332222222 4568899999998 56677999987
Q ss_pred CC
Q 018300 328 KD 329 (358)
Q Consensus 328 ~~ 329 (358)
++
T Consensus 246 ~~ 247 (391)
T 3h14_A 246 ED 247 (391)
T ss_dssp GG
T ss_pred HH
Confidence 74
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-16 Score=151.70 Aligned_cols=206 Identities=14% Similarity=0.032 Sum_probs=137.7
Q ss_pred hcccccccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHH
Q 018300 103 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (358)
Q Consensus 103 ~~i~lias~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A 180 (358)
.-+++...++. .++.+.+++...+... ..+|+. ..|. .++++.+.+++.+.+|.+.. ....+++++|++|
T Consensus 30 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~---~~~~---~~l~~~la~~~~~~~g~~~~-~~~v~~~~g~~~a 101 (370)
T 2z61_A 30 KVIHLEIGEPDFNTPKPIVDEGIKSLKEG-KTHYTD---SRGI---LELREKISELYKDKYKADII-PDNIIITGGSSLG 101 (370)
T ss_dssp CCEECCCCSCSSCCCHHHHHHHHHHHHTT-CCSCCC---TTCC---HHHHHHHHHHHHHHSSCCCC-GGGEEEESSHHHH
T ss_pred CEEEccCCCCCCCCCHHHHHHHHHHHHcC-ccCCCC---CCCC---HHHHHHHHHHHHHHhCCCCC-hhhEEECCChHHH
Confidence 34555544442 4789999998776542 123332 1122 35777767777766664321 1123445567789
Q ss_pred HHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCC
Q 018300 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (358)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s 260 (358)
+..++.++++|||+|++.++.|.++.. .+...|. +++.++ +|+++|++.+++ ++++|++..+
T Consensus 102 ~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~-------~d~~~l~~~l~~-~~~~v~~~~p 163 (370)
T 2z61_A 102 LFFALSSIIDDGDEVLIQNPCYPCYKN--------FIRFLGA--KPVFCD-------FTVESLEEALSD-KTKAIIINSP 163 (370)
T ss_dssp HHHHHHHHCCTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEEC-------SSHHHHHHHCCS-SEEEEEEESS
T ss_pred HHHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEeC-------CCHHHHHHhccc-CceEEEEcCC
Confidence 999999999999999999987765421 2334565 344432 789999998864 6788877655
Q ss_pred CC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccC--CC---CCCcEEEEcCcCcC--ccCcEEEEEEeCCCC
Q 018300 261 AY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PF---KYCDVVTTTTHKSL--RGPRGGMIFFKKDPV 331 (358)
Q Consensus 261 ~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~--pl---~gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~ 331 (358)
++ |...+.+ |.++|+++|+++++|++|+.+. ..+...+ .+ .+.|+++.|+||++ +|.+.|++++++
T Consensus 164 ~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~-~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--- 238 (370)
T 2z61_A 164 SNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLV-YEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISND--- 238 (370)
T ss_dssp CTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCB-SSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCH---
T ss_pred CCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcc-cCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECH---
Confidence 54 5688999 9999999999999999998543 3332111 12 15789999999998 455679999887
Q ss_pred chhHHHHHHhh
Q 018300 332 LGVELESAINN 342 (358)
Q Consensus 332 ~~~~~~~~i~~ 342 (358)
++.+++..
T Consensus 239 ---~~~~~~~~ 246 (370)
T 2z61_A 239 ---EIIEAILK 246 (370)
T ss_dssp ---HHHHHHHH
T ss_pred ---HHHHHHHH
Confidence 45555543
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=160.08 Aligned_cols=188 Identities=21% Similarity=0.178 Sum_probs=133.0
Q ss_pred cCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc
Q 018300 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 189 (358)
Q Consensus 110 s~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all 189 (358)
++..+++.|++++. .+ + +. +.+++..++.++++||++..+ ..+++++|++|+..++.++
T Consensus 38 ~~~~~~~~v~~a~~-----~~--~--------~~---~~~~~~~~~~~a~~~g~~~~~--~~~~~~ggt~a~~~~~~~~- 96 (374)
T 2aeu_A 38 GGFLIDEKDKALLN-----TY--I--------GS---SYFAEKVNEYGLKHLGGDEND--KCVGFNRTSSAILATILAL- 96 (374)
T ss_dssp CCCCCCHHHHHHHT-----ST--T--------HH---HHHHHHHHHHHHHHHTCCTTE--EEEEESSHHHHHHHHHHHH-
T ss_pred CCCCCCHHHHHHHH-----Hh--c--------Cc---hHHHHHHHHHHHHHhCCCCcc--eEEEEcChHHHHHHHHHhC-
Confidence 45688999999985 11 1 11 234555666778899984211 1366788899999999987
Q ss_pred cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeE-EEEcCCCCC---CC
Q 018300 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKL-IIAGASAYP---RD 265 (358)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~kl-Ii~~~s~~~---~~ 265 (358)
|||+|+++++.|++|+... ..+...|. +++.+ .|++++++. . .++|+ |++..++++ ..
T Consensus 97 -~gd~Vl~~~~~y~~~~~~~-----~~~~~~g~--~~~~v--------~d~~~l~~~-~-~~~~~~v~~~~p~nptG~~~ 158 (374)
T 2aeu_A 97 -KPKKVIHYLPELPGHPSIE-----RSCKIVNA--KYFES--------DKVGEILNK-I-DKDTLVIITGSTMDLKVIEL 158 (374)
T ss_dssp -CCSEEEEECSSSSCCTHHH-----HHHHHTTC--EEEEE--------SCHHHHHTT-C-CTTEEEEEECBCTTSCBCCH
T ss_pred -CCCEEEEecCCCCccHHHH-----HHHHHcCc--EEEEe--------CCHHHHHhc-C-CCccEEEEEccCCCCCCCCc
Confidence 9999999998887765411 12234465 33333 378999887 4 47899 888766654 46
Q ss_pred CCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 266 FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 266 ~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
.|+++|.++|+++|+++++|++|..+.......+++++ ++|++++|+||+|+||++|++++++ ++.+++..
T Consensus 159 ~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~~G~~~~~~------~~~~~l~~ 230 (374)
T 2aeu_A 159 ENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKK------ELVDKIYI 230 (374)
T ss_dssp HHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEH------HHHHHHHH
T ss_pred ccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcceEEEEECH------HHHHHHHH
Confidence 78999999999999999999998765310110111334 7899999999999999999999987 55555554
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-17 Score=157.42 Aligned_cols=226 Identities=13% Similarity=0.129 Sum_probs=149.0
Q ss_pred cChHHHHHHHHHHHHhhhcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC-
Q 018300 86 ADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN- 162 (358)
Q Consensus 86 ~d~~~~~~i~~e~~~~~~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg- 162 (358)
....+|+...++.. ...-+++..+++ ..++.|++++...+.+. ..+|+. +. .++++.+++++++++|
T Consensus 17 ~g~~~~d~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-----~~---~~~~~~l~~~l~~~~g~ 86 (391)
T 4dq6_A 17 NFSSKWSEMEKKYG-TNDLLPMWVADMDFKAAPCIIDSLKNRLEQE-IYGYTT-----RP---DSYNESIVNWLYRRHNW 86 (391)
T ss_dssp TTBHHHHCHHHHHS-CSCSEECCSSSCSSCCCHHHHHHHHHHHTTC-CCCCBC-----CC---HHHHHHHHHHHHHHHCC
T ss_pred CCceeeeecccccC-CCCceeccccCCCCCCCHHHHHHHHHHHhCC-CCCCCC-----CC---HHHHHHHHHHHHHHhCC
Confidence 34556654433221 124456654444 45799999998877542 122221 22 3566778888999999
Q ss_pred -CCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec---CCCCCC
Q 018300 163 -LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD---ESTGLV 238 (358)
Q Consensus 163 -~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~i 238 (358)
++.+ ..+++++|++|+..++.++++|||+|++.++.|.++.. .+...|. +++.++++ +.+..+
T Consensus 87 ~~~~~---~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~~ 153 (391)
T 4dq6_A 87 KIKSE---WLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNS--------VVKNNNR--ELIISPLQKLENGNYIM 153 (391)
T ss_dssp CCCGG---GEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHH--------HHHHTTC--EEEECCCEECTTSCEEC
T ss_pred CCcHH---HeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHH--------HHHHcCC--eEEeeeeeecCCCceEe
Confidence 5553 23445566779999999999999999999876665421 2334565 44555555 222358
Q ss_pred CHHHHHHHhhhcCCeEEEEcCCCCC--CC---CCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCc-----
Q 018300 239 DYDMLEKTAILFRPKLIIAGASAYP--RD---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCD----- 306 (358)
Q Consensus 239 D~d~le~~i~~~~~klIi~~~s~~~--~~---~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaD----- 306 (358)
|++++++.++. +++|++..++++ .. .++++|.++|+++|+++++|++|+. +...+..+.++. ..|
T Consensus 154 d~~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~ 230 (391)
T 4dq6_A 154 DYEDIENKIKD--VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSD-IILKKHKHIPMASISKEFEKNT 230 (391)
T ss_dssp CHHHHHHHCTT--EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBCTTCCCCCGGGSCHHHHHTE
T ss_pred eHHHHHHHhhc--CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccc-cccCCCCccCHHHcCccccCcE
Confidence 99999999875 888877665554 44 4588999999999999999999874 333333222332 222
Q ss_pred EEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 307 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 307 iv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+++.|+||++ +|.+.|+++++++ ++.+++..
T Consensus 231 i~~~s~sK~~g~~G~r~G~~~~~~~-----~~~~~~~~ 263 (391)
T 4dq6_A 231 ITCMAPTKTFNIAGLQSSYVVLPDE-----KDYKLLDD 263 (391)
T ss_dssp EEEECSHHHHTCGGGCCEEEECCSH-----HHHHHHHH
T ss_pred EEEEechhhccCcccceEEEEeCCH-----HHHHHHHH
Confidence 8899999997 5667899998874 55555544
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=161.06 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=117.0
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~ 232 (358)
.++++++++|.+. .+.++||++|+..++.++++|||+|++.++.|+++..... ......|. ++..++.
T Consensus 69 l~~~la~~~g~~~-----~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~----~~~~~~g~--~~~~v~~- 136 (398)
T 2rfv_A 69 LEKKLAVLERGEA-----GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLS----HSMPKFGI--NVRFVDA- 136 (398)
T ss_dssp HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHH----THHHHTTC--EEEEECT-
T ss_pred HHHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHH----HHHHHcCC--EEEEeCC-
Confidence 5567889999873 4778899999999999999999999999887766432100 00134455 3444333
Q ss_pred CCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEE
Q 018300 233 ESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVT 309 (358)
Q Consensus 233 ~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~ 309 (358)
.|++++++.+++ ++++|++..+++ |...|+++|.++|+++|+++++|++|+.+.. ..++. ++|+++
T Consensus 137 -----~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~-----~~~~~~~~di~~ 205 (398)
T 2rfv_A 137 -----AKPEEIRAAMRP-ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYC-----QQPLQLGADIVV 205 (398)
T ss_dssp -----TSHHHHHHHCCT-TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTT-----CCGGGGTCSEEE
T ss_pred -----CCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc-----CCchhhCCcEEE
Confidence 289999998864 788888876654 5688999999999999999999999986653 12444 799999
Q ss_pred EcCcCcCccCc---EEEEEEeCC
Q 018300 310 TTTHKSLRGPR---GGMIFFKKD 329 (358)
Q Consensus 310 ~S~hK~L~Gp~---GG~I~~~~~ 329 (358)
+|+||+|.||. ||+++++++
T Consensus 206 ~s~sK~~~~~g~~~~G~~~~~~~ 228 (398)
T 2rfv_A 206 HSVTKYINGHGDVIGGIIVGKQE 228 (398)
T ss_dssp EETTTTTTCSSCCCCEEEEECHH
T ss_pred EeCcccccCCCCceEEEEEECHH
Confidence 99999997764 499998874
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=161.16 Aligned_cols=174 Identities=13% Similarity=0.044 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc-------c-CCC------EEEecCCCCCcccccc
Q 018300 144 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL-------K-PHD------RIMGLDLPHGGHLSHG 209 (358)
Q Consensus 144 ~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all-------~-pGD------~Vl~~~~~~ggh~s~~ 209 (358)
+...++|+.+++++++++|.+.. ..+++.+||+||..++.++. + +|| +|++++..|.+..
T Consensus 144 ~~~~~le~~~~~~la~l~g~~~~---~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~--- 217 (515)
T 2jis_A 144 PVFVLMEEEVLRKLRALVGWSSG---DGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQ--- 217 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSC---EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH---
T ss_pred hHHHHHHHHHHHHHHHHhCCCCC---CeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHH---
Confidence 45567888899999999999853 23555677889998887762 3 686 7888776554432
Q ss_pred cccchhccccCCceE-EEEeceecCCCCCCCHHHHHHHhhhc-----CCeEEEEcCCC--CCCCCCHHHHHHHHHHcCCE
Q 018300 210 FMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASA--YPRDFDYPRMRQIADAVGAL 281 (358)
Q Consensus 210 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~iD~d~le~~i~~~-----~~klIi~~~s~--~~~~~dl~~I~~ia~e~g~~ 281 (358)
+.+...|... +++.++++ +++.+|+++|++.+++. +|++|++...+ +|...|+++|.++|+++|++
T Consensus 218 -----~~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~ 291 (515)
T 2jis_A 218 -----KGAAFLGLGTDSVRVVKAD-ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLW 291 (515)
T ss_dssp -----HHHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCE
T ss_pred -----HHHHHcCCCCCcEEEEecC-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCe
Confidence 1223334411 23344455 36789999999988652 47887775543 56788999999999999999
Q ss_pred EEEeccccccccccCCccCCCC---CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 282 LMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 282 livD~Ah~~Gl~~~g~~~~pl~---gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+++|++|+.+....+.+...+. ++|++++|+||++.+|.| |+++++++
T Consensus 292 l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~ 343 (515)
T 2jis_A 292 LHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDT 343 (515)
T ss_dssp EEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCC
T ss_pred EEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeCh
Confidence 9999999877654322211232 789999999999988876 88888764
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=156.87 Aligned_cols=167 Identities=19% Similarity=0.148 Sum_probs=123.0
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
+|...|| +++..+++ ++++++++|.+. .+.++||+.|+..++.+++++||+|+++++.|+++.....
T Consensus 50 ~~~y~~~--~~~~~~~l----~~~la~~~g~~~-----~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~-- 116 (389)
T 3acz_A 50 GHIYSRL--GNPTVEQF----EEMVCSIEGAAG-----SAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFT-- 116 (389)
T ss_dssp CCCBTTT--CCHHHHHH----HHHHHHHHTCSE-----EEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHH--
T ss_pred CcccCCC--CChHHHHH----HHHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH--
Confidence 4444443 34544444 456888999873 4678899999999999999999999999987776422100
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~ 290 (358)
......|. ++..++. .|++++++.+++ ++++|++..+++ |...|+++|.++|+++|+++++|++|+.
T Consensus 117 --~~~~~~g~--~~~~v~~------~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~ 185 (389)
T 3acz_A 117 --HWLPRFGI--EVDLIDT------SDVEKVKAAWKP-NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTS 185 (389)
T ss_dssp --HHHHHTTC--EEEEECT------TCHHHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred --HHHHHcCC--EEEEECC------CCHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcc
Confidence 00234565 3344332 489999998864 688998876654 5688999999999999999999999986
Q ss_pred cccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeC
Q 018300 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK 328 (358)
Q Consensus 291 Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~ 328 (358)
+.. ..+++ ++|++++|+||++.||. ||++++++
T Consensus 186 ~~~-----~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~ 222 (389)
T 3acz_A 186 PCF-----LKPLELGADIALHSVSKYINGHGDVIGGVSSAKT 222 (389)
T ss_dssp TTT-----CCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESS
T ss_pred ccc-----cCccccCCeEEEECChhhccCCCCceeEEEEECc
Confidence 643 13455 89999999999998875 58999887
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-16 Score=151.70 Aligned_cols=230 Identities=16% Similarity=0.062 Sum_probs=148.0
Q ss_pred cccccccChHHHHHHHHHHHHh---hhcccccccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHH
Q 018300 80 DYSLGEADPEVCEIITKEKERQ---FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQ 154 (358)
Q Consensus 80 ~~~l~~~d~~~~~~i~~e~~~~---~~~i~lias~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~ 154 (358)
...++++.++.......+..+. ..-++|-..++. +++.|++++...+... .+||. ....+ .+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~-------~~~~~----lr 73 (363)
T 3ffh_A 7 KKSLAGLSSYKPGKREEEVMAELGLTKITKLSSNENPLGTSKKVAAIQANSSVET--EIYPD-------GWASS----LR 73 (363)
T ss_dssp CGGGTTCCC----CHHHHHHHTTTCSCCEECSSCSCTTCCCHHHHHHHHTCBSCC--CBC-----------CHH----HH
T ss_pred hHHHHhCCCCCCCCCHHHHHHhcCCCceEEccCCCCCCCCCHHHHHHHHHHHHHh--hcCCC-------cchHH----HH
Confidence 3445556665544333333322 234566555554 5899999998765321 22332 11122 45
Q ss_pred HHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC
Q 018300 155 KRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES 234 (358)
Q Consensus 155 ~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~ 234 (358)
+++++++|+++++ .+++++|++|+..++.+++++||+|+++++.|.++.. .+...|. +++.+++++
T Consensus 74 ~~la~~~~~~~~~---v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~- 139 (363)
T 3ffh_A 74 KEVADFYQLEEEE---LIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQ--------NALIEGA--EVREIPLLQ- 139 (363)
T ss_dssp HHHHHHHTCCGGG---EEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHH--------HHHHHTC--EEEEEECCT-
T ss_pred HHHHHHhCCChhh---EEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHH--------HHHHcCC--EEEEecCCC-
Confidence 6688999987642 3445566779999999999999999998875544321 2334465 445555664
Q ss_pred CCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHc--CCEEEEeccccccccccCCccCCCC-----CC
Q 018300 235 TGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK-----YC 305 (358)
Q Consensus 235 ~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~--g~~livD~Ah~~Gl~~~g~~~~pl~-----ga 305 (358)
++.+|++++++.++. ++++|++..+++ |...|.+++.++++.+ |+++++|++|+.. .. +..+..+. ..
T Consensus 140 ~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~-~~-~~~~~~~~~~~~~~~ 216 (363)
T 3ffh_A 140 DGEHDLEGMLNAIDE-KTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEY-VT-PQPEKHEKLVRTYKN 216 (363)
T ss_dssp TSCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGG-CS-SCCCCCGGGGGTCTT
T ss_pred CCCcCHHHHHHhccc-CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhh-cC-ccccCHHHHhhcCCC
Confidence 578999999998864 788888765554 5688999999999888 9999999999833 22 22222221 33
Q ss_pred cEEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhhccC
Q 018300 306 DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVF 345 (358)
Q Consensus 306 Div~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~~~f 345 (358)
++++.|++|++ +|.+.|++++++ ++.+++.....
T Consensus 217 ~i~~~s~sK~~g~~G~r~G~~~~~~------~~~~~l~~~~~ 252 (363)
T 3ffh_A 217 LIITRTFSKIYGLASARVGYGIADK------EIIRQLNIVRP 252 (363)
T ss_dssp EEEEEESSSTTCCSSCCCEEEEECH------HHHHHHHHTCC
T ss_pred EEEEeechhhhcCchhceeeeecCH------HHHHHHHHhCC
Confidence 47889999997 456669999866 67777766433
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=158.69 Aligned_cols=190 Identities=19% Similarity=0.147 Sum_probs=129.4
Q ss_pred ccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHH
Q 018300 107 LIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT 186 (358)
Q Consensus 107 lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~ 186 (358)
+..+.++..+.+.++.... .+. ..|+.+.|+ +++...++ ++++++++|.+. .+.++||+.|+..++.
T Consensus 25 i~~~~~~~~~~~~~~~~~~-~~~-~~~~~y~~~--~~~~~~~l----~~~la~~~g~~~-----~v~~~sGt~A~~~~l~ 91 (421)
T 2ctz_A 25 IYPTTSYVFKSPEHAANLF-ALK-EFGNIYSRI--MNPTVDVL----EKRLAALEGGKA-----ALATASGHAAQFLALT 91 (421)
T ss_dssp BCCCSCBCCSCHHHHHHHH-TTT-TGGGSCBTT--BCHHHHHH----HHHHHHHHTCSE-----EEEESSHHHHHHHHHH
T ss_pred eeccceeeeCCHHHHHHhh-ccc-cCCCcccCC--CChHHHHH----HHHHHHHhCCCc-----eEEecCHHHHHHHHHH
Confidence 3345555555554443221 111 123444443 33444444 456889999874 3778899999999999
Q ss_pred HhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEec-eecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--C
Q 018300 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--P 263 (358)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~ 263 (358)
+++++||+|+++++.|+++..... ......|. ++..+ +.+ |++++++.+++ ++++|++..+++ |
T Consensus 92 ~~~~~gd~vi~~~~~~~~~~~~~~----~~~~~~g~--~~~~~~~~~------d~~~l~~~i~~-~~~~v~~~~~~n~~G 158 (421)
T 2ctz_A 92 TLAQAGDNIVSTPNLYGGTFNQFK----VTLKRLGI--EVRFTSREE------RPEEFLALTDE-KTRAWWVESIGNPAL 158 (421)
T ss_dssp HHCCTTCEEEECSCCCHHHHHHHH----THHHHTTC--EEEECCTTC------CHHHHHHHCCT-TEEEEEEESSCTTTC
T ss_pred HHhCCCCEEEEeCCCchHHHHHHH----HHHHHcCC--EEEEECCCC------CHHHHHHhhcc-CCeEEEEECCCCCCC
Confidence 999999999999987766532110 00133454 44454 332 89999998865 789988876554 5
Q ss_pred CCCCHHHHHHHHHHcCCEEEEeccc-cccccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEe
Q 018300 264 RDFDYPRMRQIADAVGALLMMDMAH-ISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFK 327 (358)
Q Consensus 264 ~~~dl~~I~~ia~e~g~~livD~Ah-~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~ 327 (358)
...|+++|.++|+++|+++++|++| +.|.. ..++. ++|++++|+||+|.||. ||+++.+
T Consensus 159 ~~~~l~~i~~~a~~~g~~livD~~~~~~g~~-----~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~ 222 (421)
T 2ctz_A 159 NIPDLEALAQAAREKGVALIVDNTFGMGGYL-----LRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDG 222 (421)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEECGGGGGGTS-----CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred cccCHHHHHHHHHHcCCEEEEECCccccccc-----CCccccCCeEEEECCcccccCCCCcEEEEEEec
Confidence 6889999999999999999999999 77742 13445 79999999999998754 5666653
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-17 Score=156.27 Aligned_cols=199 Identities=11% Similarity=0.044 Sum_probs=135.5
Q ss_pred hcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHH
Q 018300 103 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (358)
Q Consensus 103 ~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~ 182 (358)
+.+++.|++..+++.|++++...+.+... ++. +.+..+. ++.+.+++++++++|.+..+ ..+++.+|+.|+.
T Consensus 4 ~~~~~~p~p~~~~~~v~~~~~~~~~~~~~-~~~----~~~~~~~-~~~~~~~~~la~~~g~~~~~--~v~~~~g~t~al~ 75 (362)
T 3ffr_A 4 NKIYFTPGPSELYPTVRQHMITALDEKIG-VIS----HRSKKFE-EVYKTASDNLKTLLELPSNY--EVLFLASATEIWE 75 (362)
T ss_dssp CCEEECSSSCCCCTTHHHHHHHHHHTTTT-TSC----TTSHHHH-HHHHHHHHHHHHHTTCCTTE--EEEEESCHHHHHH
T ss_pred cceeccCCCcCCCHHHHHHHHHHhcCCcc-CcC----CCCHHHH-HHHHHHHHHHHHHhCCCCCc--EEEEeCCchHHHH
Confidence 34677889999999999888777654321 111 1122333 34445788899999986422 2345567788999
Q ss_pred HHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-
Q 018300 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA- 261 (358)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~- 261 (358)
.++.++.+| +.|++.. +++++.+. ..+...|..+ ..++.+ .++.+|+++++ +. .++|+|++..++
T Consensus 76 ~~~~~l~~~-~~i~~~~----~~~~~~~~---~~~~~~g~~~--~~v~~~-~~~~~d~~~l~--~~-~~~~~v~~~~~~n 141 (362)
T 3ffr_A 76 RIIQNCVEK-KSFHCVN----GSFSKRFY---EFAGELGREA--YKEEAA-FGKGFYPADIT--VP-ADAEIICLTHNET 141 (362)
T ss_dssp HHHHHHCSS-EEEEEEC----SHHHHHHH---HHHHHTTCEE--EEEECC-TTCCCCGGGCC--CC-TTCCEEEEESEET
T ss_pred HHHHhccCC-cEEEEcC----cHHHHHHH---HHHHHhCCCe--EEEecC-CCCCCCHHHHh--cc-CCccEEEEEcCCC
Confidence 999999988 5454443 22222110 1223446544 444454 35689999998 43 478988876554
Q ss_pred -CCCCCCHHHHHHHHHHc-CCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcE-EEEEEeC
Q 018300 262 -YPRDFDYPRMRQIADAV-GALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKK 328 (358)
Q Consensus 262 -~~~~~dl~~I~~ia~e~-g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~ 328 (358)
+|...|+++|.++|+++ |+++++|++|+.|.. +.++..+|++++|+||+|+||.| |+++.++
T Consensus 142 ptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~-----~~~~~~~d~~~~s~~K~~~~~~G~g~~~~~~ 206 (362)
T 3ffr_A 142 SSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYP-----KFDWTKIDSVFFSVQKCFGLPAGLGVWILND 206 (362)
T ss_dssp TTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSS-----CCCTTSCSEEEEETTSTTCCCSCCEEEEEEH
T ss_pred CcceeCCHHHHHHHHHhCCCCEEEEecccccCCc-----ccChhHCcEEEEecccccCCCCceEEEEECH
Confidence 46689999999999999 999999999986642 22233589999999999987777 7877776
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=155.02 Aligned_cols=212 Identities=15% Similarity=0.175 Sum_probs=142.1
Q ss_pred hcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceEEeCCCH
Q 018300 103 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSGS 178 (358)
Q Consensus 103 ~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg--~~~~~~~v~V~~~SGt 178 (358)
.-+++..+++ .+++.|.+++...+.+. ..+|+. + ..++++.+.+++.+.+| ++.+ ..+++++|+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-----~---~~~l~~~la~~l~~~~g~~~~~~---~v~~t~g~~ 99 (399)
T 1c7n_A 32 EVVPLSVADMEFKNPPELIEGLKKYLDET-VLGYTG-----P---TEEYKKTVKKWMKDRHQWDIQTD---WIINTAGVV 99 (399)
T ss_dssp TCCCCCSSSCSSCCCHHHHHHHHHHHHHC-CCSSBC-----C---CHHHHHHHHHHHHHHHCCCCCGG---GEEEESSHH
T ss_pred CceeeeecCCCCCCCHHHHHHHHHHHhcC-CCCCCC-----C---cHHHHHHHHHHHHHHhCCCCChh---hEEEcCCHH
Confidence 3455554444 35889999998877532 123322 2 34677777777777778 4443 224444557
Q ss_pred HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC--CCCCHHHHHHHhhhcCCeEEE
Q 018300 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST--GLVDYDMLEKTAILFRPKLII 256 (358)
Q Consensus 179 ~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~iD~d~le~~i~~~~~klIi 256 (358)
+|+..++.++++|||+|++.++.|.++.. .+...|. +++.+++++++ ..+|+++|++.++..++++|+
T Consensus 100 ~a~~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~ 169 (399)
T 1c7n_A 100 PAVFNAVREFTKPGDGVIIITPVYYPFFM--------AIKNQER--KIIECELLEKDGYYTIDFQKLEKLSKDKNNKALL 169 (399)
T ss_dssp HHHHHHHHHHCCTTCEEEECSSCCTHHHH--------HHHTTTC--EEEECCCEEETTEEECCHHHHHHHHTCTTEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCcHhHHH--------HHHHcCC--EEEecccccCCCCEEEcHHHHHHHhccCCCcEEE
Confidence 79999999999999999999886665421 2334565 44555554222 258999999988745788888
Q ss_pred EcCCCC--CCCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-------CCcEEEEcCcCcC--ccCcEE
Q 018300 257 AGASAY--PRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTTTHKSL--RGPRGG 322 (358)
Q Consensus 257 ~~~s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-------gaDiv~~S~hK~L--~Gp~GG 322 (358)
+..+++ |...+ +++|.++|+++|+++++|++|+.. ...+..+.++. +.++++.|+||++ +|.+.|
T Consensus 170 ~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 248 (399)
T 1c7n_A 170 FCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDL-IMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMS 248 (399)
T ss_dssp EESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTC-BCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCE
T ss_pred EcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCcccHHHcCccccCcEEEEEeChhhccccchheE
Confidence 765555 45667 899999999999999999999843 33332111221 2358899999997 566779
Q ss_pred EEEEeCCCCchhHHHHHHhh
Q 018300 323 MIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 323 ~I~~~~~~~~~~~~~~~i~~ 342 (358)
+++++++ ++.+++..
T Consensus 249 ~~~~~~~-----~~~~~l~~ 263 (399)
T 1c7n_A 249 NIIIKNP-----DIRERFTK 263 (399)
T ss_dssp EEECCCH-----HHHHHHHH
T ss_pred EEEECCH-----HHHHHHHH
Confidence 9998754 46565544
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.3e-17 Score=158.83 Aligned_cols=175 Identities=19% Similarity=0.160 Sum_probs=125.4
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
||.+.|+ +++...++|+ ++++++|.+. .+.++||+.|+.+ +.++++|||+|++.++.|++......
T Consensus 58 ~~~y~r~--~~p~~~~l~~----~la~l~g~~~-----~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~-- 123 (400)
T 3nmy_A 58 GFEYSRT--HNPTRFAYER----CVAALEGGTR-----AFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFE-- 123 (400)
T ss_dssp SCCBTTT--CCHHHHHHHH----HHHHHHTCSE-----EEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHH--
T ss_pred CcccccC--CCHHHHHHHH----HHHHHhCCCC-----EEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHH--
Confidence 4555454 5666666655 4788999874 4678899999988 56789999999999887765432100
Q ss_pred chhc-cccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEecccc
Q 018300 213 PKRR-VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHI 289 (358)
Q Consensus 213 ~~~~-~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~ 289 (358)
.. ....|. ++.+++. .|++++++.+++ ++++|++..+++ |...|+++|+++|+++|+++++|++|+
T Consensus 124 --~~~~~~~g~--~~~~v~~------~d~~~l~~~i~~-~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~ 192 (400)
T 3nmy_A 124 --RVRRRTAGL--DFSFVDL------TDPAAFKAAIRA-DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFA 192 (400)
T ss_dssp --HTHHHHHCC--EEEEECT------TSHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred --HhhHhhcCe--EEEEECC------CCHHHHHHHhcc-CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCc
Confidence 00 112354 4444333 288999998864 789998876654 567899999999999999999999998
Q ss_pred ccccccCCccCCCC-CCcEEEEcCcCcCccC---cEE-EEEEeCCCCchhHHHHHHhh
Q 018300 290 SGLVAASVVADPFK-YCDVVTTTTHKSLRGP---RGG-MIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 290 ~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp---~GG-~I~~~~~~~~~~~~~~~i~~ 342 (358)
.+.. ..+++ ++|++++|++|+|.|| .|| +++.+++ ++.+++..
T Consensus 193 ~~~~-----~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~-----~~~~~l~~ 240 (400)
T 3nmy_A 193 SPML-----QRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNA-----ELAEQMAF 240 (400)
T ss_dssp HHHH-----CCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCH-----HHHHHHHH
T ss_pred cccc-----CChhhcCCcEEEecCccccCCCCCcceeEEEEeCCH-----HHHHHHHH
Confidence 6543 23555 8999999999999887 578 6776664 56555543
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-17 Score=159.75 Aligned_cols=238 Identities=13% Similarity=0.071 Sum_probs=145.7
Q ss_pred ccccccChHHHHHHHHHHHHh--hhcccccccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQ--FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKR 156 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~--~~~i~lias~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~ 156 (358)
+++..+.++.+..+.+...+. +.-+++..+++. .++.|++++...+......+|+.. .|. .++++.+.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~---~g~---~~lr~~ia~~ 97 (404)
T 2o1b_A 24 NKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAF---HGK---EAFKQAIVDF 97 (404)
T ss_dssp HHHHTSCCCTTC-------CCCSSCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCT---TCC---HHHHHHHHHH
T ss_pred hHhhhCCchHHHHHHHHHHhcCCCCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCC---CCC---HHHHHHHHHH
Confidence 344444444443333322211 124566544443 578999999877643211233321 122 3566666677
Q ss_pred HHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCC
Q 018300 157 ALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 236 (358)
Q Consensus 157 la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 236 (358)
+++.+|.+.+.....+++++|++|+..++.++++|||+|++.++.|.++.. .+...|. +++.++.++++.
T Consensus 98 ~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~ 167 (404)
T 2o1b_A 98 YQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLA--------GVLLADG--KPVPLNLEPPHY 167 (404)
T ss_dssp HHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHH--------HHHHTTC--EEEEEECCTTTC
T ss_pred HHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHCCC--EEEEeccCcccC
Confidence 777779752100012444455679999999999999999999887665421 2334565 444555654334
Q ss_pred CCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCC--CC---CCc
Q 018300 237 LVDYDMLEKTAILFRPKLIIAGASAY--PRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP--FK---YCD 306 (358)
Q Consensus 237 ~iD~d~le~~i~~~~~klIi~~~s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p--l~---gaD 306 (358)
.+|+++|++.+.. ++++|++..+++ |...+ +++|.++|+++|+++++|++|+.+ ...+...+. ++ +.+
T Consensus 168 ~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~ 245 (404)
T 2o1b_A 168 LPDWSKVDSQIID-KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAF-GFDAKNPSILASENGKDVA 245 (404)
T ss_dssp CCCGGGSCHHHHH-HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTC-BSSSCCCCGGGSTTHHHHE
T ss_pred cCCHHHHHHhhcc-CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhc-ccCCCCCChhhcCCCCCCE
Confidence 6899999888753 678888865555 44554 788999999999999999999853 332321111 21 346
Q ss_pred EEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 307 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 307 iv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+++.|+||+| +|.+.|++++++ ++.+++..
T Consensus 246 i~~~s~sK~~g~~G~r~G~~~~~~------~~~~~l~~ 277 (404)
T 2o1b_A 246 IEIYSLSKGYNMSGFRVGFAVGNK------DMIQALKK 277 (404)
T ss_dssp EEEEESTTTTTCGGGCCEEEEECH------HHHHHHHH
T ss_pred EEEEecchhccCchhheEeEecCH------HHHHHHHH
Confidence 8999999998 466779999876 45555543
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.3e-17 Score=157.28 Aligned_cols=232 Identities=13% Similarity=0.013 Sum_probs=145.6
Q ss_pred ccccccChHHHHHHHHHHHHhhhcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la 158 (358)
+++..+++..+..+.+.. ...+-++|-..++ .+++.|++++...+.+....+|+.. .|. .++++.+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~---~g~---~~l~~~la~~~~ 75 (410)
T 3e2y_A 3 KRIEGLDSNVWVEFTKLA-ADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRG---FGH---PALVKALSCLYG 75 (410)
T ss_dssp GGGTTCCCCHHHHTTTTT-TSTTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCT---TCC---HHHHHHHHHHHH
T ss_pred hhhccCCccHHHHHHHHh-cCCCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCC---CCh---HHHHHHHHHHHH
Confidence 345555555554332211 1124455543333 4789999999887765433344431 122 356666667777
Q ss_pred HHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec------
Q 018300 159 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD------ 232 (358)
Q Consensus 159 ~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~------ 232 (358)
+.+|.+...-...+++++|++|+..++.++++|||+|++.++.|.++.. .+...|..+..++++..
T Consensus 76 ~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~~~~~~~~~~~~~~g~~ 147 (410)
T 3e2y_A 76 KIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEP--------MVRMAGAVPVFIPLRSKPTDGMK 147 (410)
T ss_dssp HHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEECEECCCCSSC
T ss_pred HHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHH--------HHHHcCCEEEEEecccccccccc
Confidence 7777543100012444456689999999999999999998876655421 23445654444443321
Q ss_pred --CCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCC---CHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--
Q 018300 233 --ESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-- 303 (358)
Q Consensus 233 --~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-- 303 (358)
.+++.+|++++++.+.. ++++|++..++++ ... ++++|+++|+++|+++++|++|+ ++...+..+.++.
T Consensus 148 ~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~ 225 (410)
T 3e2y_A 148 WTSSDWTFDPRELESKFSS-KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYE-WLVYTGHTHVKIATL 225 (410)
T ss_dssp CBGGGEECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGGS
T ss_pred ccccCCcCCHHHHHhhcCC-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhh-hcccCCCCCCCHHHc
Confidence 12346899999998764 7888888666654 343 68999999999999999999987 3343332221221
Q ss_pred ----CCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 304 ----YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 304 ----gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
+.++++.|++|++ +|.+.|+++++++
T Consensus 226 ~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~ 257 (410)
T 3e2y_A 226 PGMWERTITIGSAGKTFSVTGWKLGWSIGPAH 257 (410)
T ss_dssp TTCGGGEEEEEEHHHHSSCGGGCCEEEECCHH
T ss_pred CCccCeEEEEecchhhcCCCCceEEEEEECHH
Confidence 2348889999997 4677899998773
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-16 Score=158.29 Aligned_cols=174 Identities=14% Similarity=0.083 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCC--CCCCcceEEeCCCHHHHHHHHHHhcc--------CC-----C-EEEecCCCCCcccc
Q 018300 144 EYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGSPANFEVYTAILK--------PH-----D-RIMGLDLPHGGHLS 207 (358)
Q Consensus 144 ~~~~~lE~~~~~~la~lfg~~--~~~~~v~V~~~SGt~A~~~a~~all~--------pG-----D-~Vl~~~~~~ggh~s 207 (358)
+...++|+.+++++++++|.+ .. ..+++.+||+||..++.++.. +| | +|++++..|.++.
T Consensus 128 ~~~~~le~~~~~~la~~~g~~~~~~---~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~- 203 (504)
T 2okj_A 128 PVFVLMEQITLKKMREIVGWSSKDG---DGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK- 203 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSSSC---EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH-
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCCC---CEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHH-
Confidence 556789998999999999997 32 235566778899999888742 67 7 7888776554321
Q ss_pred cccccchhccccCCceE-EEEeceecCCCCCCCHHHHHHHhhhc-----CCeEEEEcCCC--CCCCCCHHHHHHHHHHcC
Q 018300 208 HGFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASA--YPRDFDYPRMRQIADAVG 279 (358)
Q Consensus 208 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~iD~d~le~~i~~~-----~~klIi~~~s~--~~~~~dl~~I~~ia~e~g 279 (358)
+.+...|... +++.++++ +++.+|+++|++.+++. +|++|++...+ +|...|+++|.++|+++|
T Consensus 204 -------~~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g 275 (504)
T 2okj_A 204 -------KAGAALGFGTDNVILIKCN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYN 275 (504)
T ss_dssp -------HHHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHT
T ss_pred -------HHHHHcCCCcccEEEEecC-CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcC
Confidence 1223334311 23344455 36799999999988652 47888776544 467889999999999999
Q ss_pred CEEEEeccccccccccCCccCCC---CCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 280 ALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 280 ~~livD~Ah~~Gl~~~g~~~~pl---~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+++++|++|+.+..........+ .++|++++++||++.+|.+ |+++++++
T Consensus 276 ~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~ 329 (504)
T 2okj_A 276 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK 329 (504)
T ss_dssp CEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST
T ss_pred CEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECH
Confidence 99999999987765322221222 3789999999999988864 88988875
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.8e-17 Score=153.39 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=123.4
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhc-cccCCceEEEEecee
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRR-VSGTSIYFESMPYRL 231 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~-~~~~g~~~~~~~~~~ 231 (358)
.++++++++|.+. .+.++||++|+..++.++++|||+|+++++.|.++.... .. ....|. ++..++.
T Consensus 3 l~~~la~~~g~~~-----~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~-----~~~~~~~g~--~~~~~~~ 70 (331)
T 1pff_A 3 LEGKIAKLEHAEA-----CAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALF-----EHQLRKFGV--EVDFIDM 70 (331)
T ss_dssp HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHH-----HTHHHHTTC--EEEEECT
T ss_pred HHHHHHHHhCCCe-----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHH-----HHHHHhcCC--EEEEeCC
Confidence 3456889999873 477899999999999999999999999998776643210 00 123454 3344322
Q ss_pred cCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--CCCCCCHHHHHHHHHH-cCCEEEEeccccccccccCCccCCCC-CCcE
Q 018300 232 DESTGLVDYDMLEKTAILFRPKLIIAGASA--YPRDFDYPRMRQIADA-VGALLMMDMAHISGLVAASVVADPFK-YCDV 307 (358)
Q Consensus 232 ~~~~~~iD~d~le~~i~~~~~klIi~~~s~--~~~~~dl~~I~~ia~e-~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDi 307 (358)
+|++++++.+++ ++++|++..++ +|...|+++|.++|++ +|+++++|++|+.|... .+++ ++|+
T Consensus 71 ------~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~-----~~~~~~~d~ 138 (331)
T 1pff_A 71 ------AVPGNIEKHLKP-NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILT-----NPLDLGVDI 138 (331)
T ss_dssp ------TSTTHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHC-----CGGGGTCSE
T ss_pred ------CCHHHHHHhhcC-CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccC-----ChhhcCCcE
Confidence 478899988764 68888886655 4568899999999999 99999999999877542 2345 7999
Q ss_pred EEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhhccCC
Q 018300 308 VTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFP 346 (358)
Q Consensus 308 v~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~~~f~ 346 (358)
+++|+||+|++|. +|+++++++ ++.+++......
T Consensus 139 ~~~s~~K~~~~~~~r~~G~~~~~~~-----~~~~~l~~~~~~ 175 (331)
T 1pff_A 139 VVHSATKYINGHTDVVAGLVCSRAD-----IIAKVKSQGIKD 175 (331)
T ss_dssp EEEETTTTTSSSSSCCCEEEEECHH-----HHHHHHHTCCCC
T ss_pred EEEECccccCCCCCceEEEEEeCcH-----HHHHHHHHHHHh
Confidence 9999999998764 789998874 566777665443
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.70 E-value=6e-17 Score=157.62 Aligned_cols=178 Identities=12% Similarity=0.094 Sum_probs=122.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccC
Q 018300 141 GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT 220 (358)
Q Consensus 141 ~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~ 220 (358)
.+.++.+.++ .+++++++++|++. ..+++.|||.|+.+++. +++|||+|++++..|.+ +.+. ......
T Consensus 29 ~~~~~~~~~~-~~~~~l~~~~~~~~----~v~~~~sgt~a~~~~~~-~~~~gd~vi~~~~~~~~---~~~~---~~~~~~ 96 (379)
T 3ke3_A 29 MSKAFQEVMN-DLLSNLKTVYNAEA----AVIIPGSGTYGMEAVAR-QLTIDEDCLIIRNGWFS---YRWT---QILEKG 96 (379)
T ss_dssp TSHHHHHHHH-HHHHHHHHHHTCSE----EEEEESCHHHHHHHHHH-HHCTTCEEEEEECSHHH---HHHH---HHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHHhCCCC----EEEEcCChhHHHHHHHH-hCCCCCeEEEEeCCchh---HHHH---HHHHHh
Confidence 3555554444 47889999999973 34556789999999875 46799999998754322 2110 111222
Q ss_pred CceEEEEeceecCC--------CCCCCHHHHHHHhhhcCCeEEEEcCC--CCCCCCC---HHHHHHHHHHcCCEEEEecc
Q 018300 221 SIYFESMPYRLDES--------TGLVDYDMLEKTAILFRPKLIIAGAS--AYPRDFD---YPRMRQIADAVGALLMMDMA 287 (358)
Q Consensus 221 g~~~~~~~~~~~~~--------~~~iD~d~le~~i~~~~~klIi~~~s--~~~~~~d---l~~I~~ia~e~g~~livD~A 287 (358)
|..+++..++.+.. .+.+|++++++.++..++++|++... .+|...| +++|.++|+++|+++++|++
T Consensus 97 g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~ 176 (379)
T 3ke3_A 97 KFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCI 176 (379)
T ss_dssp CCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred CCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 32223333333210 12689999999986557888877543 3567788 99999999999999999999
Q ss_pred ccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCCCCchhHHHHHHhh
Q 018300 288 HISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 288 h~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~~~~~~~~~~~i~~ 342 (358)
|+ |.. +..++ ++|++++|+||+|.||.| |+++.++ ++.+++..
T Consensus 177 ~~-g~~-----~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~------~~~~~l~~ 222 (379)
T 3ke3_A 177 AS-GCV-----WLDMKELGIDVLISAPQKGWSSTPCAGLVMLSA------AAIKKVES 222 (379)
T ss_dssp TC-TTC-----CCCHHHHTCSEEEECTTTTTCSCCCEEEEEECH------HHHHHHHT
T ss_pred cc-CCc-----cccccccCCCEEEecchhhcCCCCceEEEEECH------HHHHhhhc
Confidence 87 632 22233 899999999999998876 7888776 56566654
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-16 Score=147.46 Aligned_cols=208 Identities=16% Similarity=0.177 Sum_probs=137.6
Q ss_pred HHHHHHhhhcccccccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceE
Q 018300 95 TKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNV 172 (358)
Q Consensus 95 ~~e~~~~~~~i~lias~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V 172 (358)
++++...+..|.|-..+|+ ++|.|++++...+... .+||. +...+ .++.+++++|++++ +|
T Consensus 9 ~~~~~~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~--~~y~~-------~~~~~----lr~~la~~~~~~~~----~i 71 (337)
T 3p1t_A 9 DTEVRAAAQAVCLAFNENPEAVEPRVQAAIAAAAARI--NRYPF-------DAEPR----VMRKLAEHFSCPED----NL 71 (337)
T ss_dssp -----CCCCCEECSSCCCCSCCCHHHHHHHHHHGGGT--TSCCT-------THHHH----HHHHHHHHHTSCGG----GE
T ss_pred cccccCCCCceEeeCCCCCCCCCHHHHHHHHHhhhhh--ccCCC-------CchHH----HHHHHHHHhCcCHH----HE
Confidence 3444444566777666664 5899999998765431 23332 22223 45568889999764 35
Q ss_pred EeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcC
Q 018300 173 QPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR 251 (358)
Q Consensus 173 ~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~ 251 (358)
.+++|+ +++..++.++ |||+|++.++.|.++.. .+...|. +++++++++ ++.+|++++++. .+
T Consensus 72 ~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~---~~ 135 (337)
T 3p1t_A 72 MLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRA--------RIAVSGL--RHFEIGLTD-DLLLDPNDLAQV---SR 135 (337)
T ss_dssp EEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHHH--------HHTTSCC--EEEEECBCT-TSSBCHHHHTTC---CT
T ss_pred EEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHHH--------HHHHcCC--EEEEecCCC-CCCCCHHHHHhh---cC
Confidence 556655 5888888776 99999999876655421 2344565 455555653 468999999875 36
Q ss_pred CeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcC--ccCcEEEEEEe
Q 018300 252 PKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL--RGPRGGMIFFK 327 (358)
Q Consensus 252 ~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L--~Gp~GG~I~~~ 327 (358)
+++|++..+++ |...|++++.++|+++++ +++|++|. ++...+.......+.++++.|+||++ +|.+.|+++.+
T Consensus 136 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~-~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~ 213 (337)
T 3p1t_A 136 DDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYV-DYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGP 213 (337)
T ss_dssp TEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTG-GGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECC
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCCh-hhccccccccccCCCEEEEeeCchhccCcchheEEEEeC
Confidence 78888766654 568999999999999997 56699986 33322211111125679999999998 47788999987
Q ss_pred CCCCchhHHHHHHhhc
Q 018300 328 KDPVLGVELESAINNA 343 (358)
Q Consensus 328 ~~~~~~~~~~~~i~~~ 343 (358)
+ ++.+++...
T Consensus 214 ~------~~~~~l~~~ 223 (337)
T 3p1t_A 214 S------ELIAAMKRK 223 (337)
T ss_dssp H------HHHHHHHTT
T ss_pred H------HHHHHHHhh
Confidence 6 566666554
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-16 Score=155.14 Aligned_cols=206 Identities=17% Similarity=0.040 Sum_probs=135.4
Q ss_pred hcccccccCC-----CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCC
Q 018300 103 KSLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG 177 (358)
Q Consensus 103 ~~i~lias~n-----~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SG 177 (358)
..+++...++ ..++.+.+++...+.+.. .+|+. ..|. .++++.+.+++.+.+|...+ ....+++++|
T Consensus 39 ~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~---~~g~---~~l~~~la~~l~~~~g~~~~-~~~v~~t~g~ 110 (406)
T 1xi9_A 39 KVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-NYYGD---SEGL---PELRKAIVEREKRKNGVDIT-PDDVRVTAAV 110 (406)
T ss_dssp CCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-CSCCC---TTCC---HHHHHHHHHHHHHHHCCCCC-GGGEEEESHH
T ss_pred CEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCc---HHHHHHHHHHHHHhcCCCCC-HHHEEEcCCh
Confidence 3455554444 457899999987775422 23332 1122 35777777777776664321 1123444556
Q ss_pred HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC-CCCCCCHHHHHHHhhhcCCeEEE
Q 018300 178 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLII 256 (358)
Q Consensus 178 t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~iD~d~le~~i~~~~~klIi 256 (358)
++|+..++.++++|||+|++.++.|.++.. .+...|.. ++.+++++ ++..+|+++|++.++. ++++|+
T Consensus 111 ~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~--~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~ 179 (406)
T 1xi9_A 111 TEALQLIFGALLDPGDEILVPGPSYPPYTG--------LVKFYGGK--PVEYRTIEEEDWQPDIDDIRKKITD-RTKAIA 179 (406)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHTTCE--EEEEEEEGGGTSEECHHHHHHHCCT-TEEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCccHHH--------HHHHcCCE--EEEeecCCCcCCcCCHHHHHHhhCc-CceEEE
Confidence 789999999999999999999886654321 23345654 44445553 2346899999998865 688887
Q ss_pred EcCCCC--CCCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccC--CC-CCC-cEEEEcCcCcCc--cCcEEEEE
Q 018300 257 AGASAY--PRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PF-KYC-DVVTTTTHKSLR--GPRGGMIF 325 (358)
Q Consensus 257 ~~~s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~--pl-~ga-Div~~S~hK~L~--Gp~GG~I~ 325 (358)
+..+++ |...+ +++|.++|+++|+++++|++|+.+.. ++..+. .+ .+. |++++|+||+++ |.+.|+++
T Consensus 180 i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 258 (406)
T 1xi9_A 180 VINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTY-EGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMY 258 (406)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBS-SSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEE
T ss_pred EECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEE
Confidence 765554 44554 89999999999999999999985432 221111 11 245 789999999984 66678888
Q ss_pred --EeC
Q 018300 326 --FKK 328 (358)
Q Consensus 326 --~~~ 328 (358)
.++
T Consensus 259 ~~~~~ 263 (406)
T 1xi9_A 259 FVDPE 263 (406)
T ss_dssp EECTT
T ss_pred EecCc
Confidence 665
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-17 Score=157.37 Aligned_cols=207 Identities=12% Similarity=0.080 Sum_probs=136.0
Q ss_pred HhhhcccccccCCCC--cHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCC
Q 018300 100 RQFKSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG 177 (358)
Q Consensus 100 ~~~~~i~lias~n~~--s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SG 177 (358)
++...+.+.+++|+. +|.|++++...+... .|+..+...+ .++++++++|.+. .++++||
T Consensus 11 ~~~~~~~~~~~~~~~g~~p~v~~ai~~~~~~~---------~~~~~~~~~~----l~~~la~~~~~~~-----~i~~~~g 72 (359)
T 3pj0_A 11 QKTPYKLGGNGPRNVGVLTEALQNIDDNLESD---------IYGNGAVIED----FETKIAKILGKQS-----AVFFPSG 72 (359)
T ss_dssp HTCSEESSSSSCCBHHHHHHHTTTSCTTCBCC---------BTTBSHHHHH----HHHHHHHHHTCSE-----EEEESCH
T ss_pred HhcchhhcCCCccccCCCHHHHHHHHhhcccC---------cccCCHHHHH----HHHHHHHHhCCCc-----EEEeCCH
Confidence 444666777888887 889999987632211 1222333333 4556888999876 3666899
Q ss_pred HHHHHHHHHHhccCCCE--EEecCCCCCcccccccccchhcc-ccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeE
Q 018300 178 SPANFEVYTAILKPHDR--IMGLDLPHGGHLSHGFMTPKRRV-SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKL 254 (358)
Q Consensus 178 t~A~~~a~~all~pGD~--Vl~~~~~~ggh~s~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~kl 254 (358)
+.|+..++.+++++||+ |++.++. |..... ...+ ...|. ++++++. +++.+|++++++. ..++++
T Consensus 73 ~~a~~~a~~~~~~~g~~~vvi~~~~~---~~~~~~---~~~~~~~~g~--~~~~v~~--~~~~~d~~~l~~~--~~~~~~ 140 (359)
T 3pj0_A 73 TMAQQIALRIWADRKENRRVAYHPLS---HLEIHE---QDGLKELQQI--TPLLLGT--ANQLLTIDDIKSL--REPVSS 140 (359)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECTTC---HHHHSS---TTHHHHHHCC--EEEECSC--TTSCCCHHHHHTC--SSCCSE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEeccc---eeeehh---cchHHHhcCc--eEEecCC--cCCCcCHHHHHhc--cCCceE
Confidence 99999999999999987 5544332 211110 0011 23354 4555544 3578999999987 357899
Q ss_pred EEEcCCCC---CCCCCHHH---HHHHHHHcCCEEEEecccccccc-ccCCccCCC-CCCcEEEEcCcCcCccCcEEEEEE
Q 018300 255 IIAGASAY---PRDFDYPR---MRQIADAVGALLMMDMAHISGLV-AASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFF 326 (358)
Q Consensus 255 Ii~~~s~~---~~~~dl~~---I~~ia~e~g~~livD~Ah~~Gl~-~~g~~~~pl-~gaDiv~~S~hK~L~Gp~GG~I~~ 326 (358)
|++..+++ |...+.++ |.++|+++|++|++|++|..+.. ..+..+.++ .++|+++.|+||+|.+|.||+++.
T Consensus 141 v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~ 220 (359)
T 3pj0_A 141 VLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILAG 220 (359)
T ss_dssp EEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSSCEEEEE
T ss_pred EEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcceEEEEC
Confidence 98865542 45666555 59999999999999999875532 112111122 278999999999999997878777
Q ss_pred eCCCCchhHHHHHHhh
Q 018300 327 KKDPVLGVELESAINN 342 (358)
Q Consensus 327 ~~~~~~~~~~~~~i~~ 342 (358)
++ ++.+++..
T Consensus 221 ~~------~l~~~~~~ 230 (359)
T 3pj0_A 221 ND------DFVQEAKI 230 (359)
T ss_dssp CH------HHHHHHHH
T ss_pred CH------HHHHHHHH
Confidence 76 56555543
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-18 Score=169.37 Aligned_cols=201 Identities=12% Similarity=0.080 Sum_probs=130.1
Q ss_pred cccccccCCCCcHHHHHHHhhhhhcccCCCCCCC---cCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEE-eCCCHH
Q 018300 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGK---RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQ-PLSGSP 179 (358)
Q Consensus 104 ~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~---r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~-~~SGt~ 179 (358)
...+.|++..+++.|+++|...+.+.+. +|.+ .++.+.++.+.+++ +|+.++++||++..+ -.++ +.+||.
T Consensus 28 ~yl~~agpt~~p~~V~~a~~~~~~~~~~--n~~s~~~~~h~~~~~~~~~~~-ar~~la~ll~~~~~~--evif~t~~~T~ 102 (386)
T 3qm2_A 28 VFNFSSGPAMLPAEVLKLAQQELCDWHG--LGTSVMEISHRGKEFIQVAEE-AEQDFRDLLNIPSNY--KVLFCHGGGRG 102 (386)
T ss_dssp CEECCSSSCCCCHHHHHHHTCC-------------------------CCHH-HHHHHHHHHTCCTTE--EEEEEESCTTH
T ss_pred CccccCCCCCCCHHHHHHHHHHHHhccc--cCccccccCCCCHHHHHHHHH-HHHHHHHHhCCCCCc--eEEEEcCCchH
Confidence 3456699999999999999988766443 3322 12234455555665 799999999996421 1234 358899
Q ss_pred HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCC-CCHHHHHHHhhhcCCeEEEEc
Q 018300 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-VDYDMLEKTAILFRPKLIIAG 258 (358)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-iD~d~le~~i~~~~~klIi~~ 258 (358)
++.+++.+++++||+|++... ++++|.++. .....| .++.++.+. ++.+. +|++++++.+.+ ++++|.+.
T Consensus 103 a~n~ai~~l~~~gd~v~~~~~---~~~~~~~~~---~a~~~G-~v~~v~~~~-~~~G~~~~~~~~~~~l~~-~t~lV~~~ 173 (386)
T 3qm2_A 103 QFAGVPLNLLGDKTTADYVDA---GYWAASAIK---EAKKYC-APQIIDAKI-TVDGKRAVKPMREWQLSD-NAAYLHYC 173 (386)
T ss_dssp HHHHHHHHHCTTCCEEEEEES---SHHHHHHHH---HHTTTS-EEEEEECEE-EETTEEEECCGGGCCCCT-TCSCEEEC
T ss_pred HHHHHHHhccCCCCeEEEEeC---CHHHHHHHH---HHHHhC-CeEEEecCc-ccCCCCCCchHHHhhcCC-CCcEEEEE
Confidence 999999999999999876543 455554321 223446 555555431 11343 777777776653 78888765
Q ss_pred CCC--CCCC-CCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 259 ASA--YPRD-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 259 ~s~--~~~~-~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+.. +|.. .|+++|. +|+++++|++|++|.. |..++..|++++|.||++ ||.| |+++.+++
T Consensus 174 h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~-----pidv~~~~~~~~s~hK~l-GP~G~g~l~v~~~ 237 (386)
T 3qm2_A 174 PNETIDGIAIDETPDFG-----PEVVVTADFSSTILSA-----PLDVSRYGVIYAGAQKNI-GPAGLTLVIVRED 237 (386)
T ss_dssp SEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSS-----CCCGGGCSEEEEETTTTT-CCTTEEEEEEEGG
T ss_pred CCcCCcCEecCchhhhc-----CCCEEEEEcccccCCC-----CCCccccCEEEEeccccc-CCCccEEEEECHH
Confidence 433 4775 7888875 7999999999998864 333335578889999999 7998 89998876
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-15 Score=148.63 Aligned_cols=235 Identities=17% Similarity=0.074 Sum_probs=145.5
Q ss_pred hcccccccChHHHHHHHHHHHH--hh--hcccccccC----CCCcHHHHHHHhhhhhccc--CCCCCCCcCCCCcHHHHH
Q 018300 79 VDYSLGEADPEVCEIITKEKER--QF--KSLELIASE----NFTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDE 148 (358)
Q Consensus 79 ~~~~l~~~d~~~~~~i~~e~~~--~~--~~i~lias~----n~~s~~V~~al~~~l~~~~--~~G~pg~r~~~G~~~~~~ 148 (358)
+++++..+.+..+..+.+...+ .. .-+++-.+. .+.++.+.+++...+.... .. |+. ..| ..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~---~~~---~~~ 79 (407)
T 2zc0_A 7 LAGRANWIKGSALADVMKKASELQKKGVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTP---ANG---IPE 79 (407)
T ss_dssp SCGGGGGCCCCHHHHHHHHHHHHHHSSCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCC---TTC---CHH
T ss_pred hhhhhccCCchHHHHHHHhhhcccCCCCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCC---CCC---CHH
Confidence 3455555555544333332221 22 345553221 2356889999887765421 11 221 112 235
Q ss_pred HHHHHHHHHHHHcCC--CCCCCcceEEeC-CCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEE
Q 018300 149 LETLCQKRALAAFNL--DENKWGVNVQPL-SGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE 225 (358)
Q Consensus 149 lE~~~~~~la~lfg~--~~~~~~v~V~~~-SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~ 225 (358)
+++.+.+++.+.+|. +.+ +|+++ +|++|+..++.++++|||+|++.++.|.++. ..+...|..
T Consensus 80 l~~~la~~~~~~~g~~~~~~----~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~--------~~~~~~g~~-- 145 (407)
T 2zc0_A 80 LREELAAFLKKYDHLEVSPE----NIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTL--------LAFEQLGAK-- 145 (407)
T ss_dssp HHHHHHHHHHHHSCCCCCGG----GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH--------HHHHTTTCE--
T ss_pred HHHHHHHHHHHhcCCCCCcc----eEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHH--------HHHHHcCCE--
Confidence 777666666666684 332 34444 4578999999999999999999887655432 123445654
Q ss_pred EEeceecCCCCCCCHHHHHHHhh----h-cCCeEEE-EcCCCC--CCCCCHH---HHHHHHHHcCCEEEEeccccccccc
Q 018300 226 SMPYRLDESTGLVDYDMLEKTAI----L-FRPKLII-AGASAY--PRDFDYP---RMRQIADAVGALLMMDMAHISGLVA 294 (358)
Q Consensus 226 ~~~~~~~~~~~~iD~d~le~~i~----~-~~~klIi-~~~s~~--~~~~dl~---~I~~ia~e~g~~livD~Ah~~Gl~~ 294 (358)
++.++.++ ++ +|+++|++.++ . .++++|+ +..+++ |...+.+ +|.++|+++|+++++|++|+.+ ..
T Consensus 146 ~~~v~~~~-~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~ 222 (407)
T 2zc0_A 146 IEGVPVDN-DG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFM-RY 222 (407)
T ss_dssp EEEEEEET-TE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTS-BS
T ss_pred EEEcccCC-CC-CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCccc-cc
Confidence 44555554 33 89999999886 4 2678874 444444 5677765 8999999999999999998854 32
Q ss_pred cCCccCCC---C--CCcEEEEcCcCcCc-cCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 295 ASVVADPF---K--YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 295 ~g~~~~pl---~--gaDiv~~S~hK~L~-Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
.+..+.++ + +.++++.|+||+++ |.++|++++++ ++.+++...
T Consensus 223 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~------~~~~~~~~~ 271 (407)
T 2zc0_A 223 EGGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAEG------EILKKVLMQ 271 (407)
T ss_dssp SCSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEECCH------HHHHHHHHH
T ss_pred CCCCCCChhhcCCCCCEEEEcccccccCCCcceEEEecCH------HHHHHHHHH
Confidence 22211112 2 34578899999986 44789999875 566666553
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=152.39 Aligned_cols=191 Identities=15% Similarity=0.115 Sum_probs=128.0
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pG 192 (358)
..++.|++++...+.. +.. .|+..+ +.+.+++++++++| ... ..+++++|++|+..++.++++||
T Consensus 19 ~~~~~v~~a~~~~~~~-~~~------~~~~~~----~~~~l~~~la~~~g-~~~---~v~~~~~gt~a~~~al~~~~~~g 83 (356)
T 1v72_A 19 GASPEVAQALVKHSSG-QAG------PYGTDE----LTAQVKRKFCEIFE-RDV---EVFLVPTGTAANALCLSAMTPPW 83 (356)
T ss_dssp CCCHHHHHHHHHTTSS-CCC------STTCSH----HHHHHHHHHHHHHT-SCC---EEEEESCHHHHHHHHHHTSCCTT
T ss_pred CCCHHHHHHHHhhccC-ccc------ccccch----HHHHHHHHHHHHhC-CCC---cEEEeCCccHHHHHHHHHhcCCC
Confidence 4689999999876421 111 122223 33446777899999 331 13566788999999999999999
Q ss_pred CEEEecCCCCCcccccccccchhccccC--CceEEEEeceecCCCCCCCHHHHHH-Hhhhc------CCeEEEEcCC-CC
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGT--SIYFESMPYRLDESTGLVDYDMLEK-TAILF------RPKLIIAGAS-AY 262 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~iD~d~le~-~i~~~------~~klIi~~~s-~~ 262 (358)
|+|++.++.|.+....+ .+... |. ++++++.+ ++.+|+++|++ .+++. ++++|++..+ ++
T Consensus 84 d~vi~~~~~~~~~~~~~------~~~~~~~g~--~~~~v~~~--~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~t 153 (356)
T 1v72_A 84 GNIYCHPASHINNDECG------APEFFSNGA--KLMTVDGP--AAKLDIVRLRERTREKVGDVHTTQPACVSITQATEV 153 (356)
T ss_dssp EEEEECTTSHHHHSSTT------HHHHHTTSC--EEEECCCG--GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTT
T ss_pred CEEEEcCccchhhhhch------HHHHHhCCc--EEEEecCC--CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCCC
Confidence 99999887554432110 12233 55 44555554 36899999999 87642 5788877654 45
Q ss_pred CC---CCCHHHHHHHHHHcCCEEEEecccccccc-ccCCccCCC--C-CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 263 PR---DFDYPRMRQIADAVGALLMMDMAHISGLV-AASVVADPF--K-YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 263 ~~---~~dl~~I~~ia~e~g~~livD~Ah~~Gl~-~~g~~~~pl--~-gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
|. ..++++|.++|+++|+++++|++|..+.. ..+..+..+ + ++|++++|+||+ .+|.| |+++++++
T Consensus 154 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~~~~ 227 (356)
T 1v72_A 154 GSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIVLFNTS 227 (356)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEEESSGG
T ss_pred CccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEEEECHH
Confidence 66 34588999999999999999999874422 222222233 2 689999999999 66777 68877663
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-16 Score=156.38 Aligned_cols=224 Identities=11% Similarity=0.103 Sum_probs=147.6
Q ss_pred cChHHHHHHHHHHHH--------hhhcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHH
Q 018300 86 ADPEVCEIITKEKER--------QFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK 155 (358)
Q Consensus 86 ~d~~~~~~i~~e~~~--------~~~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~ 155 (358)
+++..+..+.+.... ...-++|..++. .+++.|.+++...+......+|+. ..|.. ++++.+.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~---~~g~~---~lr~~ia~ 106 (447)
T 3b46_A 33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSP---TRGRP---SLINSLIK 106 (447)
T ss_dssp CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCC---TTCCH---HHHHHHHH
T ss_pred cCccHHHHHHHHHHhhccchhccCCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCC---CCCCH---HHHHHHHH
Confidence 667777777665432 224456654332 367899999988765421223432 11322 56666666
Q ss_pred HHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-
Q 018300 156 RALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES- 234 (358)
Q Consensus 156 ~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~- 234 (358)
++.+.+|.+.+ ....+++++|++|+..++.++++|||+|++.++.|.++.. .+...|.. ++.++++++
T Consensus 107 ~l~~~~g~~~~-~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~~--~~~v~~~~~~ 175 (447)
T 3b46_A 107 LYSPIYNTELK-AENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIP--------NIELCGGK--VVYVPINPPK 175 (447)
T ss_dssp HHTTTTTSCCC-GGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCE--EEEEEEECCG
T ss_pred HHHHhcCCCCC-hhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHH--------HHHHcCCE--EEEEeCCCcc
Confidence 67666776431 1112344455789999999999999999999887665422 23455654 444445443
Q ss_pred ----------CCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCC---CHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 235 ----------TGLVDYDMLEKTAILFRPKLIIAGASAYP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 235 ----------~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
++.+|+++|++.+. .++++|++..+++| ... ++++|+++|+++|+++++|++|.. +...+..+
T Consensus 176 ~~~~~~~~~~~~~~d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~-~~~~g~~~ 253 (447)
T 3b46_A 176 ELDQRNTRGEEWTIDFEQFEKAIT-SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEH-LYFTDSFT 253 (447)
T ss_dssp GGGTSCBCSTTSEECHHHHHTTCC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBCSSCCC
T ss_pred ccccccccccCcccCHHHHHHhhc-cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchh-cccCCCCc
Confidence 34689999999886 37888888766654 343 589999999999999999999874 33333111
Q ss_pred --CCC--C--CCcEEEEcCcCcC--ccCcEEEEEE-eC
Q 018300 300 --DPF--K--YCDVVTTTTHKSL--RGPRGGMIFF-KK 328 (358)
Q Consensus 300 --~pl--~--gaDiv~~S~hK~L--~Gp~GG~I~~-~~ 328 (358)
..+ + +.|+++.|+||++ +|.|.|++++ ++
T Consensus 254 ~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~ 291 (447)
T 3b46_A 254 RIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNA 291 (447)
T ss_dssp CGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCH
T ss_pred CHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCH
Confidence 123 1 6789999999998 4777899999 65
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-17 Score=159.67 Aligned_cols=203 Identities=11% Similarity=0.060 Sum_probs=136.5
Q ss_pred hcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCc---CCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEE--eCCC
Q 018300 103 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKR---YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQ--PLSG 177 (358)
Q Consensus 103 ~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r---~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~--~~SG 177 (358)
+.+++.|++..+++.|+++|...+.+.+. ++.+. .+.+.++.+.+++ +|+.++++||++.. -+|. +.+|
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~~~~~~~--~~~s~~~~~hr~~~~~~~~~~-~r~~la~ll~~~~~---~~v~f~t~~~ 78 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKELCDYQG--RGYSIMEISHRTKVFEEVHFG-AQEKAKKLYELNDD---YEVLFLQGGA 78 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGGG--SSSCGGGSCSSSHHHHHHHHH-HHHHHHHHHTCCTT---EEEEEESSHH
T ss_pred ceEeecCCCCCCcHHHHHHHHHHHHhccc--CCceeeccCCCCHHHHHHHHH-HHHHHHHHhCCCCC---ceEEEEcCcH
Confidence 55688899999999999999988876543 33221 2335566666665 89999999999642 1344 4567
Q ss_pred HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCC-CCHHHHHHHhhhcCCeEEE
Q 018300 178 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-VDYDMLEKTAILFRPKLII 256 (358)
Q Consensus 178 t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-iD~d~le~~i~~~~~klIi 256 (358)
|.++.+++.+++ +||+++... .|+++|.+.. .....|..++.++ ++++... +++++ + +++ ++++|.
T Consensus 79 T~a~n~~~~~~~-~~~~~~~i~---~~~~~~~~~~---~a~~~G~~v~~~~--~~~~g~~~~~~~~-~--l~~-~t~lv~ 145 (361)
T 3m5u_A 79 SLQFAMIPMNLA-LNGVCEYAN---TGVWTKKAIK---EAQILGVNVKTVA--SSEESNFDHIPRV-E--FSD-NADYAY 145 (361)
T ss_dssp HHHHHHHHHHHC-CSSCEEEEE---CSHHHHHHHH---HHHHTTCCEEEEE--ECTTTTSCSCCCC-C--CCT-TSSEEE
T ss_pred HHHHHHHHHhcC-CCCeEEEEe---CCHHHHHHHH---HHHHcCCceEEEe--cccCcCCCcCChh-h--cCC-CCCEEE
Confidence 889999999998 899763322 1444554321 2233465555554 5532212 45655 3 553 788887
Q ss_pred EcCCC--CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcE-EEEEEeCCCCch
Q 018300 257 AGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG 333 (358)
Q Consensus 257 ~~~s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~~~~~~ 333 (358)
+.+.. +|...|. +++ +|+++++|++|++|.. |..++.+|++++|.||++ ||.| |+++.++
T Consensus 146 ~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~-----~id~~~~d~~~~s~~K~~-gp~G~g~l~~~~----- 208 (361)
T 3m5u_A 146 ICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSR-----KVDFSNIALFYGGVQKNA-GISGLSCIFIRK----- 208 (361)
T ss_dssp EESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSS-----CCCCTTEEEEEEETTTTS-SCTTCEEEEEEH-----
T ss_pred EeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCC-----CCCcccCCEEEEechhcc-CCCccEEEEEcH-----
Confidence 65433 4665552 344 4999999999998864 333447899999999999 7998 8998887
Q ss_pred hHHHHHHhh
Q 018300 334 VELESAINN 342 (358)
Q Consensus 334 ~~~~~~i~~ 342 (358)
++.+++..
T Consensus 209 -~~~~~~~~ 216 (361)
T 3m5u_A 209 -DMLERSKN 216 (361)
T ss_dssp -HHHHHHHT
T ss_pred -HHHhhhcC
Confidence 56556554
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=151.70 Aligned_cols=190 Identities=13% Similarity=0.120 Sum_probs=132.2
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pG 192 (358)
.+++.|++++...+.. |..+ .+.. ++++.+++++++++|.+++ ..+++++|++|+..++.++++||
T Consensus 25 ~~~~~v~~a~~~~~~~-~~~~------~g~~----~~~~~~~~~l~~~~g~~~~---~v~~~~g~t~a~~~~~~~~~~~g 90 (359)
T 1svv_A 25 GMHPKILDLMARDNMT-QHAG------YGQD----SHCAKAARLIGELLERPDA---DVHFISGGTQTNLIACSLALRPW 90 (359)
T ss_dssp CCCHHHHHHHHHHTTC-CCCS------TTCS----HHHHHHHHHHHHHHTCTTS---EEEEESCHHHHHHHHHHHHCCTT
T ss_pred CCCHHHHHHHHHHHhh-cccc------cccc----HHHHHHHHHHHHHhCCCCc---cEEEeCCchHHHHHHHHHHhCCC
Confidence 6789999999877642 2211 1112 3455577789999998764 23455678889999999999999
Q ss_pred CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc------CCeEEEEcCCC-CCCC
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF------RPKLIIAGASA-YPRD 265 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~------~~klIi~~~s~-~~~~ 265 (358)
|+|++.++.|.++... ..+...|.. ++.++.+ ++.+|+++|++.+++. ++++|++..++ +|..
T Consensus 91 d~vl~~~~~~~~~~~~------~~~~~~g~~--~~~v~~~--~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~ 160 (359)
T 1svv_A 91 EAVIATQLGHISTHET------GAIEATGHK--VVTAPCP--DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQ 160 (359)
T ss_dssp EEEEEETTSHHHHSST------THHHHTTCC--EEEECCT--TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCC
T ss_pred CEEEEcccchHHHHHH------HHHhcCCCe--eEEEeCC--CCeecHHHHHHHHHHHHhccCCCceEEEEEcCCCCcee
Confidence 9999998866554321 012345654 4444444 5789999999988764 27888776553 4667
Q ss_pred CC---HHHHHHHHHHcCCEEEEeccc---cccccccCCccCCC---CCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 266 FD---YPRMRQIADAVGALLMMDMAH---ISGLVAASVVADPF---KYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 266 ~d---l~~I~~ia~e~g~~livD~Ah---~~Gl~~~g~~~~pl---~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
.+ +++|.++|+++|+++++|++| +.|.. +.....+ ..+|++++|+||+ ++|.| |+++.+++
T Consensus 161 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l~~~~~ 231 (359)
T 1svv_A 161 YTKQELEDISASCKEHGLYLFLDGARLASALSSP--VNDLTLADIARLTDMFYIGATKA-GGMFGEALIILNDA 231 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTST--TCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEECSGG
T ss_pred cCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCC--CcchhhhhhhhcCCEEEEecccC-CCCCceEEEEEccc
Confidence 77 889999999999999999998 33322 1111111 1579999999996 66766 88888775
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-16 Score=152.20 Aligned_cols=162 Identities=21% Similarity=0.249 Sum_probs=119.4
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~ 232 (358)
.++++++++|.+. .+.++||++|+..++.+++++||+|++.++.|++.... + .......|. ++..++.
T Consensus 57 l~~~la~~~~~~~-----~i~~~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~-~---~~~~~~~g~--~~~~~~~- 124 (386)
T 1cs1_A 57 VQRALAELEGGAG-----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRL-F---DSLAKRGCY--RVLFVDQ- 124 (386)
T ss_dssp HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH-H---HHHHTTTSC--EEEEECT-
T ss_pred HHHHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHH-H---HHHHHhcCC--EEEEeCC-
Confidence 4556888999873 46779999999999999999999999998877653210 0 001133454 3344332
Q ss_pred CCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEE
Q 018300 233 ESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVT 309 (358)
Q Consensus 233 ~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~ 309 (358)
.|++++++.++. ++++|++..+++ |...|+++|.++|+++|+++++|++|+.+... .+++ ++|+++
T Consensus 125 -----~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~-----~~~~~~~di~~ 193 (386)
T 1cs1_A 125 -----GDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQ-----NPLALGADLVL 193 (386)
T ss_dssp -----TCHHHHHHHHHT-CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-----CGGGGTCSEEE
T ss_pred -----CCHHHHHHhhcc-CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-----CccccCceEEE
Confidence 289999998864 789888876654 56789999999999999999999999865431 2345 789999
Q ss_pred EcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhh
Q 018300 310 TTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 310 ~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+|+||+++||. ||+++++++ ++.+++..
T Consensus 194 ~s~sK~~~~~~~~~~G~~~~~~~-----~l~~~l~~ 224 (386)
T 1cs1_A 194 HSCTKYLNGHSDVVAGVVIAKDP-----DVVTELAW 224 (386)
T ss_dssp EETTTTTTCSSCCCCEEEEESSH-----HHHHHHHH
T ss_pred EcCcccccCCCCceeEEEEeCcH-----HHHHHHHH
Confidence 99999997775 399998874 45555543
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-15 Score=154.53 Aligned_cols=174 Identities=11% Similarity=0.030 Sum_probs=127.5
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCC--CCCcceEEeCCCHHHHHHHHHHhccCC--------CEEEecCCCCCccccccccc
Q 018300 143 NEYIDELETLCQKRALAAFNLDE--NKWGVNVQPLSGSPANFEVYTAILKPH--------DRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 143 ~~~~~~lE~~~~~~la~lfg~~~--~~~~v~V~~~SGt~A~~~a~~all~pG--------D~Vl~~~~~~ggh~s~~~~~ 212 (358)
.+...++|+.+++++++++|.+. +.. ..+++++|++|+..++.++.++| |+|++..+.|.++.
T Consensus 134 ~p~~~~le~~l~~~la~~~g~~~~~~~v-~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~------ 206 (514)
T 3mad_A 134 WPSTAKFEAEVVAMTAHMLGGDAAGGTV-CGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFD------ 206 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHTTGGGGTSCC-EEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHH------
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCccCCc-ceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHH------
Confidence 34456788888899999999983 211 12556778889999999998777 99999887665532
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--CCCCCCHHHHHHHHHHcCCEEEEeccccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~ 290 (358)
+.+...|.. ++.+++++ ++.+|+++|++.+++ ++++|++..++ +|...|+++|.++|+++|++|++|++|+.
T Consensus 207 --~~~~~~G~~--v~~v~~~~-~~~~d~~~Le~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~ 280 (514)
T 3mad_A 207 --KAAQYFGIK--LVRTPLDA-DYRADVAAMREAITP-NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGG 280 (514)
T ss_dssp --HHHHHHTCE--EEEECBCT-TSCBCHHHHHHHCCT-TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTT
T ss_pred --HHHHHcCCe--eEEeeeCC-CCCCCHHHHHHHhcc-CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEeccccc
Confidence 133445654 44555664 678999999999865 78888876665 46788999999999999999999999885
Q ss_pred cccc----cCC--ccCCC--CCCcEEEEcCcCcCccCc-EEEEEEeCC
Q 018300 291 GLVA----ASV--VADPF--KYCDVVTTTTHKSLRGPR-GGMIFFKKD 329 (358)
Q Consensus 291 Gl~~----~g~--~~~pl--~gaDiv~~S~hK~L~Gp~-GG~I~~~~~ 329 (358)
+... .|. .+..+ .++|++++|+||++.||. .|+++++++
T Consensus 281 ~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~ 328 (514)
T 3mad_A 281 FILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRP 328 (514)
T ss_dssp TTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSH
T ss_pred ccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCH
Confidence 4321 111 11111 289999999999976654 488888874
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-16 Score=157.97 Aligned_cols=177 Identities=11% Similarity=-0.034 Sum_probs=125.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCC------CcceEEeCCCHHHHHHHHHHhc-------------------cCCCEE
Q 018300 141 GGNEYIDELETLCQKRALAAFNLDENK------WGVNVQPLSGSPANFEVYTAIL-------------------KPHDRI 195 (358)
Q Consensus 141 ~G~~~~~~lE~~~~~~la~lfg~~~~~------~~v~V~~~SGt~A~~~a~~all-------------------~pGD~V 195 (358)
...+...++|+.+.+++++++|.+... .+..+++++||+||+.++.+.. .|+++|
T Consensus 106 ~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v 185 (475)
T 3k40_A 106 IASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVG 185 (475)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEE
T ss_pred cCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEE
Confidence 344667789999999999999998521 0124667889999998887652 145788
Q ss_pred EecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcC-----CeEEEEcC--CCCCCCCCH
Q 018300 196 MGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGA--SAYPRDFDY 268 (358)
Q Consensus 196 l~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~-----~klIi~~~--s~~~~~~dl 268 (358)
++++..|.+.. +.+...|. +++.+++++ ++ +|+++|++.+++.+ |.+|++.. +.+|...|+
T Consensus 186 i~s~~~H~s~~--------~~~~~~g~--~~~~v~~d~-~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l 253 (475)
T 3k40_A 186 YCSDQAHSSVE--------RAGLLGGV--KLRSVQSEN-HR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYL 253 (475)
T ss_dssp EEETTSCHHHH--------HHHHHHTC--EEEEECCBT-TB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred EECCCchHHHH--------HHHHHcCC--ceEEEECCC-CC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCH
Confidence 88876543321 23345565 445555663 57 99999999986531 55555533 346778899
Q ss_pred HHHHHHHHHcCCEEEEeccccccccccCCccCCC---CCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 269 PRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 269 ~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
++|.++|+++|+++++|+||+.+....+.....+ +.+|.+++++||+|.+|.| |+++++++
T Consensus 254 ~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~ 318 (475)
T 3k40_A 254 DECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDP 318 (475)
T ss_dssp HHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSG
T ss_pred HHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCH
Confidence 9999999999999999999987654332222112 2579999999999999976 77777765
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=157.11 Aligned_cols=214 Identities=13% Similarity=0.090 Sum_probs=143.1
Q ss_pred hcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceEEeCCCH
Q 018300 103 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSGS 178 (358)
Q Consensus 103 ~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg--~~~~~~~v~V~~~SGt 178 (358)
+-+++..+++ ..+|.|.+++...+... ..+|+. .. .++++.+++++++.+| ++.+ ..+++++|+
T Consensus 62 ~~i~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-----~~---~~l~~~l~~~l~~~~g~~~~~~---~v~~~~g~~ 129 (421)
T 3l8a_A 62 ELLQMWVADMDFLPVPEIKEAIINYGREH-IFGYNY-----FN---DDLYQAVIDWERKEHDYAVVKE---DILFIDGVV 129 (421)
T ss_dssp TCEECCSSCCCSCCCHHHHHHHHHHHHHC-CSSCBC-----CC---HHHHHHHHHHHHHHHCCCCCGG---GEEEESCHH
T ss_pred CeeecccCCCCCCCCHHHHHHHHHHHhcC-CcCCCC-----CC---HHHHHHHHHHHHHHhCCCCCHH---HEEEcCCHH
Confidence 4455554433 45899999998876542 223332 11 3566778888999998 4443 234444556
Q ss_pred HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEc
Q 018300 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258 (358)
Q Consensus 179 ~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~ 258 (358)
+|+..++.+++++||+|++.++.|.++.. .+...|..+..++++....+..+|+++|++.++..++++|++.
T Consensus 130 ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~ 201 (421)
T 3l8a_A 130 PAISIALQAFSEKGDAVLINSPVYYPFAR--------TIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLC 201 (421)
T ss_dssp HHHHHHHHHHSCTEEEEEEEESCCHHHHH--------HHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEECCCCcHHHHH--------HHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEEC
Confidence 69999999999999999998876655321 2334565444444331222336899999999875578988876
Q ss_pred CCCC--CCC---CCHHHHHHHHHHcCCEEEEeccccccccccCCccCCC-----C--CCcEEEEcCcCcC--ccCcEEEE
Q 018300 259 ASAY--PRD---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-----K--YCDVVTTTTHKSL--RGPRGGMI 324 (358)
Q Consensus 259 ~s~~--~~~---~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl-----~--gaDiv~~S~hK~L--~Gp~GG~I 324 (358)
.+++ |.. .++++|+++|+++|++|++|++|+ ++...|....++ + +.++++.|++|+| +|.+.|++
T Consensus 202 ~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~ 280 (421)
T 3l8a_A 202 SPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQ-DLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFA 280 (421)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeE
Confidence 6554 344 368999999999999999999987 444444222222 1 3348899999997 46677999
Q ss_pred EEeCCCCchhHHHHHHhh
Q 018300 325 FFKKDPVLGVELESAINN 342 (358)
Q Consensus 325 ~~~~~~~~~~~~~~~i~~ 342 (358)
+++++ ++.+.+..
T Consensus 281 ~~~~~-----~l~~~~~~ 293 (421)
T 3l8a_A 281 IIQNE-----SLRRKFQY 293 (421)
T ss_dssp ECCSH-----HHHHHHHH
T ss_pred EcCCH-----HHHHHHHH
Confidence 98844 56666554
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.69 E-value=6e-17 Score=162.02 Aligned_cols=214 Identities=14% Similarity=0.129 Sum_probs=137.2
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCC--CCcC-----CCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLP--GKRY-----YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA 180 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~p--g~r~-----~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A 180 (358)
++..+.++.|.+++.......+..+.. +... +.+.+...++++.+++++++++|++.+ .+++.+|| .+
T Consensus 87 aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~----~~~t~g~te~a 162 (456)
T 2z67_A 87 VRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH----AIATPISTGMS 162 (456)
T ss_dssp EECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE----EEEESSCHHHH
T ss_pred cccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCC----EEEeCcHHHHH
Confidence 445566778888876533222221111 0000 011223556778899999999999863 35556777 57
Q ss_pred HHHHHHHhcc--CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHh-hh---cCCeE
Q 018300 181 NFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA-IL---FRPKL 254 (358)
Q Consensus 181 ~~~a~~all~--pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i-~~---~~~kl 254 (358)
|..++.++.. +||+|++++++|.+.. +.+...|..+..+++....+++.+|+++|++.+ +. .++.+
T Consensus 163 ~~~al~~~~~~~~~~~vi~~~~~h~s~~--------~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 234 (456)
T 2z67_A 163 ISLCLSAARKKYGSNVVIYPYASHKSPI--------KAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPC 234 (456)
T ss_dssp HHHHHHHHHHHHCCCEEEEECCCCHHHH--------HHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcHHHH--------HHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEE
Confidence 7767766533 7888888876655421 234456765544443111245789999999998 42 35666
Q ss_pred EEEcCCC--CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccC---CCC-CCcEEEEcCcCcCccCcE-EEEEEe
Q 018300 255 IIAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD---PFK-YCDVVTTTTHKSLRGPRG-GMIFFK 327 (358)
Q Consensus 255 Ii~~~s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~---pl~-gaDiv~~S~hK~L~Gp~G-G~I~~~ 327 (358)
|++..++ +|...|+++|.++|+++|+++++|+||+.... +..+. .+. ++|++++|+||++.||.| |+++++
T Consensus 235 vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~--g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~ 312 (456)
T 2z67_A 235 VLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNN--YYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYST 312 (456)
T ss_dssp EEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCH--HHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEES
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHH--HhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEc
Confidence 7665554 46789999999999999999999988763221 11111 112 699999999999877764 899986
Q ss_pred CCCCchhHHHHHHh
Q 018300 328 KDPVLGVELESAIN 341 (358)
Q Consensus 328 ~~~~~~~~~~~~i~ 341 (358)
++ ++.+++.
T Consensus 313 ~~-----~~~~~l~ 321 (456)
T 2z67_A 313 DA-----EFIKEIS 321 (456)
T ss_dssp CH-----HHHHHHH
T ss_pred CH-----HHHhhcC
Confidence 54 5666664
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=155.60 Aligned_cols=205 Identities=16% Similarity=0.084 Sum_probs=134.1
Q ss_pred hcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHH
Q 018300 103 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (358)
Q Consensus 103 ~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A 180 (358)
..+++...++ ..++.+++++ ..+... ..+|+.. .|. .++++.+.+++.+.+|.+.. ....+++++|++|
T Consensus 44 ~~i~l~~~~~~~~~~~~v~~a~-~~l~~~-~~~y~~~---~g~---~~l~~~la~~~~~~~g~~~~-~~~v~~~~g~t~a 114 (409)
T 2gb3_A 44 RIHHLNIGQPDLKTPEVFFERI-YENKPE-VVYYSHS---AGI---WELREAFASYYKRRQRVDVK-PENVLVTNGGSEA 114 (409)
T ss_dssp EEEECSSCCCCSCCCTHHHHHH-HHTCCS-SCCCCCT---TCC---HHHHHHHHHHHHHTSCCCCC-GGGEEEESHHHHH
T ss_pred CEEeccCCCCCCCCCHHHHHHH-HHHhcC-CCCCCCC---CCc---HHHHHHHHHHHHHHhCCCCC-HHHEEEeCCHHHH
Confidence 4456654444 3578899999 776432 2233321 122 35777666777766664321 1123455667889
Q ss_pred HHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC-CCCCCCHHHHHHHhhhcCCeEEEEcC
Q 018300 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAGA 259 (358)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~iD~d~le~~i~~~~~klIi~~~ 259 (358)
+..++.++++|||+|++.++.|.++.. .+...|. +++.++.++ ++..+ +++|++.++. ++++|++..
T Consensus 115 ~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~-~~~l~~~l~~-~~~~v~~~~ 182 (409)
T 2gb3_A 115 ILFSFAVIANPGDEILVLEPFYANYNA--------FAKIAGV--KLIPVTRRMEEGFAI-PQNLESFINE-RTKGIVLSN 182 (409)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHHTC--EEEEEECCGGGTSCC-CTTGGGGCCT-TEEEEEEES
T ss_pred HHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEeccCCCCCCcc-HHHHHHhhCc-CCeEEEECC
Confidence 999999999999999999887655421 2334565 344445553 22344 7888887764 688887765
Q ss_pred CCC--CCCC---CHHHHHHHHHHcCCEEEEeccccccccccCCccCCC---CCCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 260 SAY--PRDF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 260 s~~--~~~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
+++ |... ++++|.++|+++|+++++|++|+.+. ..+.....+ .+.|++++|+||++ +|.+.|+++++++
T Consensus 183 p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 261 (409)
T 2gb3_A 183 PCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIV-FRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNE 261 (409)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB-CSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCH
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccc-cCCCCCCccccCCCCEEEEecchhccCCccceEEEEEECcH
Confidence 554 4444 58999999999999999999998543 222211112 25789999999998 4556799999873
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=6.5e-16 Score=148.80 Aligned_cols=227 Identities=15% Similarity=0.073 Sum_probs=143.2
Q ss_pred cChHHHHHHHHHHHHhh---hcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHH
Q 018300 86 ADPEVCEIITKEKERQF---KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (358)
Q Consensus 86 ~d~~~~~~i~~e~~~~~---~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~l 160 (358)
++|+.+..+.+...+.. .-++|-..++ ..++.|++++...+.. ..+|+. ..|. .++++.+.+++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~---~~g~---~~lr~~la~~l~~~ 75 (376)
T 3ezs_A 4 FEPYPFERLRALLKEITPKKRGLDLGIGEPQFETPKFIQDALKNHTHS--LNIYPK---SAFE---ESLRAAQRGFFKRR 75 (376)
T ss_dssp CCCCHHHHHHHHHTTCCCSSCCCBCSSCCCCSCCCHHHHHHHHTTGGG--GGSCCC---TTCC---HHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHhhhccCCEEEeCCCCCCCCCCHHHHHHHHHhhhh--cCCCCC---CCCC---HHHHHHHHHHHHHH
Confidence 34555555544433322 2344444443 3588999999877622 223433 1222 25677777778888
Q ss_pred cCC--CCCCCcceEEeCCCHHHHHHHHHHhccC--CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCC
Q 018300 161 FNL--DENKWGVNVQPLSGSPANFEVYTAILKP--HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 236 (358)
Q Consensus 161 fg~--~~~~~~v~V~~~SGt~A~~~a~~all~p--GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 236 (358)
+|. +++ ..+++++|++|+..++.++++| ||+|++.++.|.++.. .+...|. +++++++++++
T Consensus 76 ~g~~~~~~---~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~- 141 (376)
T 3ezs_A 76 FKIELKEN---ELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEG--------AAKFIKA--KSLLMPLTKEN- 141 (376)
T ss_dssp HSCCCCGG---GEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHH--------HHHHTTC--EEEEEECCGGG-
T ss_pred hCCCCCHH---HEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHH--------HHHHcCC--EEEEcccCCCC-
Confidence 897 443 2355567788999999999999 9999998876655321 2334565 44455555332
Q ss_pred CCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCC---------
Q 018300 237 LVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF--------- 302 (358)
Q Consensus 237 ~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl--------- 302 (358)
.+++ ++++.+.. ++++|++..++++ ...+ +++|+++|+++|+++++|++|.. +...+.....+
T Consensus 142 ~~~~-~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~ 218 (376)
T 3ezs_A 142 DFTP-SLNEKELQ-EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSE-IYENTPPPSLLEACMLAGNE 218 (376)
T ss_dssp TSCC-CCCHHHHH-HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBSSSCCCCHHHHHHHTTCT
T ss_pred Ccch-hHHhhhcc-CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchh-hccCCCCCCHHHcccccccc
Confidence 3343 55555544 6888888655554 4555 67788889999999999999874 33333211111
Q ss_pred C-CCcEEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 303 K-YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 303 ~-gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
. +.++++.|+||++ +|.+.|++++++ ++.+++...
T Consensus 219 ~~~~~i~~~s~sK~~g~~G~r~G~~~~~~------~~~~~~~~~ 256 (376)
T 3ezs_A 219 AFKNVLVIHSLSKRSSAPGLRSGFIAGDS------RLLEKYKAF 256 (376)
T ss_dssp TCTTEEEEEESTTTTTCGGGCCEEEEECH------HHHHHHHHH
T ss_pred ccCcEEEEecchhccCCccceeEEEeeCH------HHHHHHHHH
Confidence 2 5679999999998 566779998876 566666543
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-17 Score=161.14 Aligned_cols=197 Identities=13% Similarity=0.048 Sum_probs=135.3
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCC-CcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEe--CCCHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPG-KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP--LSGSPANFEVY 185 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg-~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~--~SGt~A~~~a~ 185 (358)
++..++|+.|++++...+.+.+..|... ..+..+.++.+.+++ +|+.++++||++.. -+|.+ .+||.++.+++
T Consensus 19 at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~-ar~~la~ll~~~~~---~evif~t~~~T~a~n~a~ 94 (377)
T 3e77_A 19 YFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINN-TENLVRELLAVPDN---YKVIFLQGGGCGQFSAVP 94 (377)
T ss_dssp ECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHH-HHHHHHHHHTCCTT---EEEEEESSHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHH-HHHHHHHHhCCCCC---CeEEEEcCchHHHHHHHH
Confidence 6667889999999999887655433211 113446666666766 89999999999752 13444 46788999999
Q ss_pred HHhccC--CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCC--C
Q 018300 186 TAILKP--HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS--A 261 (358)
Q Consensus 186 ~all~p--GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s--~ 261 (358)
.+++++ ||+|++... +++++.+. +.++..|. +...++++. ++.+|+++++..+. .++++|.+.+. .
T Consensus 95 ~~l~~~~~Gd~v~~~~~---g~~~~~~~---~~a~~~G~--~~~~~~~~~-~~~~~~~~~~~~i~-~~t~lV~~~h~et~ 164 (377)
T 3e77_A 95 LNLIGLKAGRCADYVVT---GAWSAKAA---EEAKKFGT--INIVHPKLG-SYTKIPDPSTWNLN-PDASYVYYCANETV 164 (377)
T ss_dssp HHHGGGSTTCEEEECCC---SHHHHHHH---HHHTTTSE--EEECSCCCS-SSCSCCCGGGCCCC-TTCSCEEEESEETT
T ss_pred HhccCCCCCCeEEEEEC---CHHHHHHH---HHHHHhCC--ceEEeccCC-CcCCCCChHHhccC-CCccEEEEeCccCc
Confidence 999865 999987654 45454331 12234454 344444542 34566666665554 36788766443 3
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcE-EEEEEeCCC
Q 018300 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDP 330 (358)
Q Consensus 262 ~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~~~ 330 (358)
+|...|+ +|+++|+++++|++|++|.. |..++..|++++|.||++ ||.| |+++.+++.
T Consensus 165 tG~~~pi-----i~~~~~~~~~vD~~q~~g~~-----~id~~~~~~~~~s~~K~~-gp~G~g~l~~~~~~ 223 (377)
T 3e77_A 165 HGVEFDF-----IPDVKGAVLVCDMSSNFLSK-----PVDVSKFGVIFAGAQKNV-GSAGVTVVIVRDDL 223 (377)
T ss_dssp TTEECSS-----CCCCTTCCEEEECTTTTTSS-----CCCGGGCSEEEEEGGGTT-SCTTCEEEEEETTS
T ss_pred hheEchh-----hhccCCCEEEEEcccccCCC-----CCchhhcCEEEEeccccc-CCCccEEEEEcHHH
Confidence 5888887 47889999999999998854 233335668999999999 8998 888888863
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-16 Score=155.37 Aligned_cols=177 Identities=15% Similarity=0.029 Sum_probs=126.0
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCC-------cceEEeCCCHHHHHHHHHHhc-------------------cCCCEE
Q 018300 142 GNEYIDELETLCQKRALAAFNLDENKW-------GVNVQPLSGSPANFEVYTAIL-------------------KPHDRI 195 (358)
Q Consensus 142 G~~~~~~lE~~~~~~la~lfg~~~~~~-------~v~V~~~SGt~A~~~a~~all-------------------~pGD~V 195 (358)
..+...++|+.+.+++++++|.+...+ +..+++++||+||+.++.+.. .|+++|
T Consensus 112 ~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v 191 (481)
T 4e1o_A 112 SSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVA 191 (481)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEE
Confidence 345667899999999999999975310 123667788999998887652 267889
Q ss_pred EecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcC-----CeEEEEcC--CCCCCCCCH
Q 018300 196 MGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGA--SAYPRDFDY 268 (358)
Q Consensus 196 l~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~-----~klIi~~~--s~~~~~~dl 268 (358)
++++..|.+.. +.+.+.|. +++.++++ +++.+|+++|++.+++.+ |.+|++.. +.+|...|+
T Consensus 192 ~~s~~~H~s~~--------~~~~~~g~--~~~~v~~~-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l 260 (481)
T 4e1o_A 192 YASDQAHSSVE--------KAGLISLV--KMKFLPVD-DNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCL 260 (481)
T ss_dssp EEETTSCHHHH--------HHHHHHTC--EEEEECCC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred EEcCcchHHHH--------HHHHhCCC--ceEEEEcC-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCH
Confidence 98876443321 23344565 44455565 467999999999986532 56555543 335778899
Q ss_pred HHHHHHHHHcCCEEEEeccccccccccCCccCCC---CCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 269 PRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 269 ~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
++|+++|++||+++++|+||..+..........+ +.+|.+++++||+|.+|.| |+++.+++
T Consensus 261 ~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~ 325 (481)
T 4e1o_A 261 SELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDK 325 (481)
T ss_dssp HHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBH
T ss_pred HHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCH
Confidence 9999999999999999999987654332221112 2469999999999999976 77777764
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.7e-16 Score=149.33 Aligned_cols=226 Identities=15% Similarity=0.100 Sum_probs=145.9
Q ss_pred ccccccChHHHHHHHHHHHHh-----hhcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQ-----FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 153 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~-----~~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~ 153 (358)
.+++.+.++.+..+.+...+. +.-|+|-..++ .+++.|++++...+... .+|+.. .|. .++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~---~g~---~~lr~~l 75 (396)
T 3jtx_A 4 TLLKQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLHEL--EKYPLT---AGL---PELRQAC 75 (396)
T ss_dssp HHHHHCCSCHHHHHHHHTTTCCCCTTCCCEECSCCSCCSCCCHHHHHHHHHTGGGG--GSCCCT---TCC---HHHHHHH
T ss_pred hhhccCCCChHHHHHHHHHhhhhccCCCeEEeCCcCCCCCCCHHHHHHHHHHhhhc--cCCCCC---CCc---HHHHHHH
Confidence 345566666665555433332 23455544443 35899999998776422 234431 232 2567777
Q ss_pred HHHHHHHcCCC---CCCCcceEEeCCCHHHHHHHHHHhccCC-----CEEEecCCCCCcccccccccchhccccCCceEE
Q 018300 154 QKRALAAFNLD---ENKWGVNVQPLSGSPANFEVYTAILKPH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE 225 (358)
Q Consensus 154 ~~~la~lfg~~---~~~~~v~V~~~SGt~A~~~a~~all~pG-----D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~ 225 (358)
.+++.+.+|.+ +++. .+++++|++|+..++.++++|| |+|++.++.|.++.. .+...|. +
T Consensus 76 a~~l~~~~g~~~~~~~~~--i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~--------~~~~~g~--~ 143 (396)
T 3jtx_A 76 ANWLKRRYDGLTVDADNE--ILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEG--------ATLLGGG--E 143 (396)
T ss_dssp HHHHHHHTTTCCCCTTTS--EEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHH--------HHHHTTC--E
T ss_pred HHHHHHhcCCCCCCCCCe--EEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHH--------HHHHcCC--E
Confidence 77888888864 4201 2444555679999999999997 799998876654321 2344565 4
Q ss_pred EEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccC
Q 018300 226 SMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300 (358)
Q Consensus 226 ~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~ 300 (358)
++++++++++..+|++++++.+.. ++++|++..+++ |...+ +++|.++|+++|+++++|++|+. +...+..+.
T Consensus 144 ~~~v~~~~~g~~~d~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~ 221 (396)
T 3jtx_A 144 IHFANCPAPSFNPDWRSISEEVWK-RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSE-IYFDGNKPL 221 (396)
T ss_dssp EEEEECCTTTCCCCGGGSCHHHHH-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTT-CCSTTCCCC
T ss_pred EEEeecCCCCCccCHHHHHHhhcc-CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCCc
Confidence 445555544457899999988865 788888765555 44555 55589999999999999999874 333331111
Q ss_pred C-C---------CCCcEEEEcCcCcC--ccCcEEEEEEeC
Q 018300 301 P-F---------KYCDVVTTTTHKSL--RGPRGGMIFFKK 328 (358)
Q Consensus 301 p-l---------~gaDiv~~S~hK~L--~Gp~GG~I~~~~ 328 (358)
. + .+.++++.|++|++ +|.+.|++++++
T Consensus 222 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 261 (396)
T 3jtx_A 222 GCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDA 261 (396)
T ss_dssp CHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECH
T ss_pred hHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCH
Confidence 1 1 25678899999974 667789998876
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.5e-16 Score=151.13 Aligned_cols=208 Identities=14% Similarity=0.048 Sum_probs=136.8
Q ss_pred hcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHH
Q 018300 103 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (358)
Q Consensus 103 ~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A 180 (358)
.-++|-..++ .+++.|++++...+.+....+|+.. .|. .++++.+.+++.+.+|.+.+ ....+++++|++|
T Consensus 45 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~---~g~---~~lr~~la~~~~~~~g~~~~-~~~i~~t~g~t~a 117 (437)
T 3g0t_A 45 KFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNL---DGL---PELKQEASRFAKLFVNIDIP-ARACVPTVGSMQG 117 (437)
T ss_dssp CCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCT---TCC---HHHHHHHHHHHHHHHCCCCC-GGGEEEESHHHHH
T ss_pred CEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCC---CCh---HHHHHHHHHHHHHhhCCCCC-cccEEEeCCHHHH
Confidence 4456654444 3589999999888764332344431 122 35666666666666665421 1123445556779
Q ss_pred HHHHHHHhc--cCCC--EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEE
Q 018300 181 NFEVYTAIL--KPHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 256 (358)
Q Consensus 181 ~~~a~~all--~pGD--~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi 256 (358)
+..++.+++ +||| +|++.++.|.++.. .+...|..+. .+++++++..+|+++|++.++..++++|+
T Consensus 118 l~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~--------~~~~~g~~~~--~v~~~~~~~~~d~~~l~~~l~~~~~~~v~ 187 (437)
T 3g0t_A 118 CFVSFLVANRTHKNREYGTLFIDPGFNLNKL--------QCRILGQKFE--SFDLFEYRGEKLREKLESYLQTGQFCSII 187 (437)
T ss_dssp HHHHHHHHTTSCTTCSCCEEEEESCCHHHHH--------HHHHHTCCCE--EEEGGGGCTTHHHHHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHhcCCCCCccEEEEeCCCcHhHHH--------HHHHcCCEEE--EEeecCCCCccCHHHHHHHHhcCCceEEE
Confidence 999999998 9999 99998876654321 2334565444 44455445578999999998545789887
Q ss_pred EcCCCC--CCCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccC--------CC---CCCcEEEEcCcCcC--cc
Q 018300 257 AGASAY--PRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--------PF---KYCDVVTTTTHKSL--RG 318 (358)
Q Consensus 257 ~~~s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~--------pl---~gaDiv~~S~hK~L--~G 318 (358)
+..+++ |...+ +++|+++|+++|++|++|++|+.... .+..+. .+ .+.+++++|+||++ +|
T Consensus 188 l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 266 (437)
T 3g0t_A 188 YSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDF-RKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAG 266 (437)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCT-TSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGG
T ss_pred EeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhccc-CCCcCcccccchhhccCCCCCcEEEEEcCccCCCCcc
Confidence 755554 44555 77789999999999999999974322 221111 11 14568999999996 56
Q ss_pred CcEEEEEEeC
Q 018300 319 PRGGMIFFKK 328 (358)
Q Consensus 319 p~GG~I~~~~ 328 (358)
.+.|++++++
T Consensus 267 ~r~G~~~~~~ 276 (437)
T 3g0t_A 267 QRIGVLMISG 276 (437)
T ss_dssp GCCEEEEECH
T ss_pred ceeEEEEECH
Confidence 6779999886
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.1e-16 Score=151.56 Aligned_cols=192 Identities=15% Similarity=0.093 Sum_probs=130.4
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC-----CCCCCCcceEEeCCCHHHHHHHHHH
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-----LDENKWGVNVQPLSGSPANFEVYTA 187 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg-----~~~~~~~v~V~~~SGt~A~~~a~~a 187 (358)
++++.|++++...+......+|+.. .|.+ ++ ++.++++++ ++.+ ..+++++|++|+..++.+
T Consensus 71 ~~~~~v~~a~~~~~~~~~~~~y~~~---~g~~---~l----r~~la~~~~~~~~~~~~~---~v~~t~g~t~al~~~~~~ 137 (427)
T 3dyd_A 71 PTDPEVTQAMKDALDSGKYNGYAPS---IGFL---SS----REEIASYYHCPEAPLEAK---DVILTSGCSQAIDLCLAV 137 (427)
T ss_dssp CCCHHHHHHHHHHHHHCCSSSCCCT---TCCH---HH----HHHHHHHHCBTTBCCCGG---GEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCcCCCCCCC---CCcH---HH----HHHHHHHHhhcCCCCChH---HEEEecCcHHHHHHHHHH
Confidence 6799999999887765433344321 1222 33 445677777 4443 235556678899999999
Q ss_pred hccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC-CCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CC
Q 018300 188 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAGASAY--PR 264 (358)
Q Consensus 188 ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~ 264 (358)
+++|||+|++.++.|.++.. .+...|..+ ..+++++ ++..+|++++++.++. ++++|++..+++ |.
T Consensus 138 l~~~gd~vl~~~p~~~~~~~--------~~~~~g~~~--~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~p~nptG~ 206 (427)
T 3dyd_A 138 LANPGQNILVPRPGFSLYKT--------LAESMGIEV--KLYNLLPEKSWEIDLKQLEYLIDE-KTACLIVNNPSNPCGS 206 (427)
T ss_dssp HCCTTCEEEEEESCCTHHHH--------HHHHTTCEE--EEEEEEGGGTTEECHHHHHSSCCT-TEEEEEEESSCTTTCC
T ss_pred hcCCCCEEEEcCCCchhHHH--------HHHHcCCEE--EEEecccccCCCCCHHHHHHHhcc-CCCEEEEECCCCCCCC
Confidence 99999999999876655421 234456544 4444443 3457899999998864 677777655554 45
Q ss_pred CCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCc---EEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 265 DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCD---VVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 265 ~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaD---iv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
..+ +++|+++|+++|+++++|++|. ++...+..+.++. +.| +++.|+||++ +|.|.|+++++++
T Consensus 207 ~~~~~~l~~i~~~~~~~~~~~i~Deay~-~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~ 280 (427)
T 3dyd_A 207 VFSKRHLQKILAVAARQCVPILADEIYG-DMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDR 280 (427)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEECTTT-TCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECS
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCch-hhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCc
Confidence 777 9999999999999999999987 4443332222222 223 6688999984 5677799998753
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-16 Score=154.70 Aligned_cols=160 Identities=14% Similarity=0.115 Sum_probs=117.1
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~ 232 (358)
+++++++++|.+. .+.++||++|+..++. +++|||+|+++++.|++...... ..+...|..+ ..++++
T Consensus 60 lr~~la~~~g~~~-----~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~----~~~~~~G~~v--~~v~~~ 127 (393)
T 1n8p_A 60 LERAVAALENAQY-----GLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFT----KVANAHGVET--SFTNDL 127 (393)
T ss_dssp HHHHHHHHTTCSE-----EEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHH----HTSTTTCSCC--EEESSH
T ss_pred HHHHHHHHhCCCc-----EEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHH----HHHHHcCcEE--EEeCCC
Confidence 4566899999873 4778999999999999 99999999999887765322100 0123345433 333332
Q ss_pred CCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHc----CCEEEEeccccccccccCCccCCCC-CC
Q 018300 233 ESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAV----GALLMMDMAHISGLVAASVVADPFK-YC 305 (358)
Q Consensus 233 ~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~----g~~livD~Ah~~Gl~~~g~~~~pl~-ga 305 (358)
| +++++.++. ++++|++..+++ |...|+++|.++|+++ |+++++|++|+.+... .+++ ++
T Consensus 128 ------d-~~l~~~i~~-~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-----~~~~~~~ 194 (393)
T 1n8p_A 128 ------L-NDLPQLIKE-NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-----NPLNFGA 194 (393)
T ss_dssp ------H-HHHHHHSCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-----CGGGGTC
T ss_pred ------h-HHHHHhccc-CceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-----CHHHcCC
Confidence 7 889988764 688998876654 5688999999999999 9999999999876531 3444 79
Q ss_pred cEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhh
Q 018300 306 DVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 306 Div~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
|++++|+||+++++. ||+++++++ ++.+++..
T Consensus 195 di~~~S~sK~~g~~G~rigG~~~~~~~-----~~~~~l~~ 229 (393)
T 1n8p_A 195 DIVVHSATKYINGHSDVVLGVLATNNK-----PLYERLQF 229 (393)
T ss_dssp SEEEEETTTTTTCSSCCCCEEEEESCH-----HHHHHHHH
T ss_pred eEEEEECcccccCCCCceeEEEEeCCH-----HHHHHHHH
Confidence 999999999886542 499988643 55555543
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-15 Score=143.72 Aligned_cols=211 Identities=14% Similarity=0.111 Sum_probs=142.1
Q ss_pred ccccccCC--CCcHHHHHHHhhhhhccc--CCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceEEeCCC-
Q 018300 105 LELIASEN--FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG- 177 (358)
Q Consensus 105 i~lias~n--~~s~~V~~al~~~l~~~~--~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~--~~~~~~v~V~~~SG- 177 (358)
++|...++ ..++.+++++...+.+.. ..+|+.. .+ .++++.+.+++.+.+|. +++ +|.+++|
T Consensus 33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~---~~----~~l~~~la~~l~~~~g~~~~~~----~v~~~~G~ 101 (369)
T 3cq5_A 33 IRLNTNENPYPPSEALVADLVATVDKIATELNRYPER---DA----VELRDELAAYITKQTGVAVTRD----NLWAANGS 101 (369)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCCT---TC----HHHHHHHHHHHHHHHCCCCCGG----GEEEESHH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCCc---cH----HHHHHHHHHhhhhcccCCCChH----hEEECCCh
Confidence 56655544 357899999887765421 1233321 11 35666666666666654 332 3555555
Q ss_pred HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEE
Q 018300 178 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA 257 (358)
Q Consensus 178 t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~ 257 (358)
++|+..++.++++|||+|++.++.|.++.. .+...|.. ++.++.+ +++.+|++++++.++..++++|++
T Consensus 102 ~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~--------~~~~~g~~--~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~ 170 (369)
T 3cq5_A 102 NEILQQLLQAFGGPGRTALGFQPSYSMHPI--------LAKGTHTE--FIAVSRG-ADFRIDMDVALEEIRAKQPDIVFV 170 (369)
T ss_dssp HHHHHHHHHHHCSTTCEEEEEESSCTHHHH--------HHHHTTCE--EEEEECC-TTSSCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCChHHHHH--------HHHHcCCE--EEEecCC-cCCCCCHHHHHHHhhccCCCEEEE
Confidence 568989999999999999999887765421 23345654 4444454 345799999999887547898888
Q ss_pred cCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--C-CcEEEEcCcCcC--ccCcEEEEEEeCCC
Q 018300 258 GASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--Y-CDVVTTTTHKSL--RGPRGGMIFFKKDP 330 (358)
Q Consensus 258 ~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--g-aDiv~~S~hK~L--~Gp~GG~I~~~~~~ 330 (358)
..+++ |...|.+++.++|+.+++++++|++|+.+.. .......++ + .++++.|+||++ +|.+.|++++++
T Consensus 171 ~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-- 247 (369)
T 3cq5_A 171 TTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSP-SPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANP-- 247 (369)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCC-SCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECT--
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcC-CcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCH--
Confidence 65554 5688999999999999999999999985432 111001112 3 568999999998 456679999986
Q ss_pred CchhHHHHHHhhcc
Q 018300 331 VLGVELESAINNAV 344 (358)
Q Consensus 331 ~~~~~~~~~i~~~~ 344 (358)
++.+++....
T Consensus 248 ----~~~~~l~~~~ 257 (369)
T 3cq5_A 248 ----AFIDAVMLVR 257 (369)
T ss_dssp ----HHHHHHHTTS
T ss_pred ----HHHHHHHHcC
Confidence 6767776543
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.1e-16 Score=155.41 Aligned_cols=192 Identities=15% Similarity=0.131 Sum_probs=132.1
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh----c
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI----L 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al----l 189 (358)
..|.+.+++...+. .| .|..... -..-..++++.+++++++++|.+. ..+++++|+.|+..++.++ .
T Consensus 78 ~~p~v~~~~~~~~~-~~---~~~~~~~-~~~g~~~l~~~l~~~la~~~g~~~----~~~~~~ggt~a~~~al~~~~~~~~ 148 (474)
T 1wyu_B 78 YNPKLHEEAARLFA-DL---HPYQDPR-TAQGALRLMWELGEYLKALTGMDA----ITLEPAAGAHGELTGILIIRAYHE 148 (474)
T ss_dssp CCCHHHHHHHHTTS-SC---CTTSCGG-GCHHHHHHHHHHHHHHHHHHTCSE----EECCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-hc---CCCCchh-hChHHHHHHHHHHHHHHHHHCCCc----eeecChHHHHHHHHHHHHHHHHHH
Confidence 34677777765422 12 2211100 012233566678889999999975 2345567788998766554 4
Q ss_pred cCCC-----EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-CC
Q 018300 190 KPHD-----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YP 263 (358)
Q Consensus 190 ~pGD-----~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-~~ 263 (358)
++|| +|+++++.|+++.. .+...|. +++.++++ +++.+|+++|++.+.+ ++++|++..++ +|
T Consensus 149 ~~Gd~~~r~~Vlv~~~~h~~~~~--------~~~~~G~--~vv~v~~~-~~~~~d~~~L~~~i~~-~t~~v~~~~pn~~G 216 (474)
T 1wyu_B 149 DRGEGRTRRVVLVPDSAHGSNPA--------TASMAGY--QVREIPSG-PEGEVDLEALKRELGP-HVAALMLTNPNTLG 216 (474)
T ss_dssp HTTCTTTCCEEEEETTSCTHHHH--------HHHHTTC--EEEEECBC-TTSSBCHHHHHHHCST-TEEEEEECSSCTTS
T ss_pred hcCCccCCCEEEEeCCcChhhHH--------HHHHCCC--EEEEecCC-CCCCcCHHHHHHhhCC-CceEEEEECCCCCc
Confidence 6898 99999876665432 2345665 44555565 3578999999999864 67888876655 45
Q ss_pred CC-CCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCcCccC------cEEEEEEeCC
Q 018300 264 RD-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGP------RGGMIFFKKD 329 (358)
Q Consensus 264 ~~-~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp------~GG~I~~~~~ 329 (358)
.. .|+++|.++|+++|+++++|++|+.+.. +.. .+.+ ++|++++|+||+|.+| +.|+++++++
T Consensus 217 ~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~--g~~-~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~ 287 (474)
T 1wyu_B 217 LFERRILEISRLCKEAGVQLYYDGANLNAIM--GWA-RPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH 287 (474)
T ss_dssp CCCTTHHHHHHHHHHHTCEEEEEGGGGGGTT--TTC-CHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGG
T ss_pred ccCCCHHHHHHHHHHcCCEEEEeCchhhhhc--cCC-CcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHH
Confidence 55 5899999999999999999999976653 111 2222 7999999999999765 5699999874
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-16 Score=157.87 Aligned_cols=162 Identities=19% Similarity=0.188 Sum_probs=119.5
Q ss_pred HHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee
Q 018300 152 LCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (358)
Q Consensus 152 ~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~ 231 (358)
.+++++++++|.+. .+++++|+.|+.+++. +++|||+|+++++.|+++.... ...+...|. +++.++.
T Consensus 137 ~l~~~la~~~g~~~-----~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~----~~~~~~~G~--~v~~v~~ 204 (464)
T 1ibj_A 137 ALESLLAKLDKADR-----AFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLL----SQVVPRSGV--VVKRVNT 204 (464)
T ss_dssp HHHHHHHHHHTCSE-----EEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHH----HHTSGGGTC--EEEEECT
T ss_pred HHHHHHHHHhCCCe-----EEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHH----HHHHHHcCC--EEEEeCC
Confidence 35667889999863 3667899999988775 7899999999998776653200 001234455 3444333
Q ss_pred cCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEE
Q 018300 232 DESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVV 308 (358)
Q Consensus 232 ~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv 308 (358)
.|++++++.++. ++|+|++..+++ |...|+++|.++|+++|+++++|++|+.|.. ..+++ ++|++
T Consensus 205 ------~d~~~l~~~i~~-~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~-----~~~~~~~~div 272 (464)
T 1ibj_A 205 ------TKLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVL-----SRPLELGADIV 272 (464)
T ss_dssp ------TSHHHHHHHCCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTT-----CCGGGTTCSEE
T ss_pred ------CCHHHHHHHhcc-CceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCccccc-----CChhhcCCEEE
Confidence 289999998864 789999877665 5688999999999999999999999986643 23445 79999
Q ss_pred EEcCcCcCccC---cEEEEEEeCCCCchhHHHHHHhh
Q 018300 309 TTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 309 ~~S~hK~L~Gp---~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
++|+||++.|| ++|+++++++ ++.+++..
T Consensus 273 ~~S~sK~~~g~~Gl~~G~l~~~~~-----~l~~~l~~ 304 (464)
T 1ibj_A 273 MHSATKFIAGHSDVMAGVLAVKGE-----KLAKEVYF 304 (464)
T ss_dssp EEETTTTTTCSSCCCCEEEEECSH-----HHHHHHHH
T ss_pred EECCcccccCCCCCcEEEEEEChH-----HHHHHHHH
Confidence 99999999876 4599999864 45555543
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.4e-16 Score=148.75 Aligned_cols=211 Identities=14% Similarity=0.094 Sum_probs=138.1
Q ss_pred hcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHH-HHHHHHHHHHHHcC--CCCCCCcceEEeCCC
Q 018300 103 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDE-LETLCQKRALAAFN--LDENKWGVNVQPLSG 177 (358)
Q Consensus 103 ~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~-lE~~~~~~la~lfg--~~~~~~~v~V~~~SG 177 (358)
.-+++..+++ .+++.|.+++...+... ..+|+. + ..+ +++.+.+++.+.+| ++++ ..+++++|
T Consensus 29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-----~---~~~~lr~~la~~l~~~~g~~~~~~---~v~~t~g~ 96 (390)
T 1d2f_A 29 DLLPFTISDMDFATAPCIIEALNQRLMHG-VFGYSR-----W---KNDEFLAAIAHWFSTQHYTAIDSQ---TVVYGPSV 96 (390)
T ss_dssp -CEECCSSSCSSCCCHHHHHHHHHHHTTC-CCCCCC-----S---CCHHHHHHHHHHHHHHSCCCCCGG---GEEEESCH
T ss_pred CeeEeeecCCCCCCCHHHHHHHHHHHhCC-CCCCCC-----C---ChHHHHHHHHHHHHHhcCCCCCHH---HEEEcCCH
Confidence 3455543333 46899999998876432 223332 1 235 66767777777778 4443 22344455
Q ss_pred HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC--CCCCHHHHHHHhhhcCCeEE
Q 018300 178 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST--GLVDYDMLEKTAILFRPKLI 255 (358)
Q Consensus 178 t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~iD~d~le~~i~~~~~klI 255 (358)
++|+..++.++++|||+|++.++.|.++.. .+...|.. ++.+++++++ ..+|+++|++.++..++++|
T Consensus 97 ~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~~--~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v 166 (390)
T 1d2f_A 97 IYMVSELIRQWSETGEGVVIHTPAYDAFYK--------AIEGNQRT--VMPVALEKQADGWFCDMGKLEAVLAKPECKIM 166 (390)
T ss_dssp HHHHHHHHHHSSCTTCEEEEEESCCHHHHH--------HHHHTTCE--EEEEECEECSSSEECCHHHHHHHHTSTTEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCcHHHHH--------HHHHCCCE--EEEeecccCCCccccCHHHHHHHhccCCCeEE
Confidence 679999999999999999998876655421 23345654 3444454332 25899999998875478888
Q ss_pred EEcCCCC--CCCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCC---CC-CC-cEEEEcCcCcC--ccCcEEE
Q 018300 256 IAGASAY--PRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---FK-YC-DVVTTTTHKSL--RGPRGGM 323 (358)
Q Consensus 256 i~~~s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p---l~-ga-Div~~S~hK~L--~Gp~GG~ 323 (358)
++..+++ |...+ +++|.++|+++|+++++|++|+.+ ...+..+.+ ++ .. |. +.|+||++ +|.+.|+
T Consensus 167 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~ 244 (390)
T 1d2f_A 167 LLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDM-VWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAY 244 (390)
T ss_dssp EEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTC-BCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEE
T ss_pred EEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheE
Confidence 7755554 44555 899999999999999999999853 333321112 22 22 77 99999997 5667799
Q ss_pred EEEeCCCCchhHHHHHHhh
Q 018300 324 IFFKKDPVLGVELESAINN 342 (358)
Q Consensus 324 I~~~~~~~~~~~~~~~i~~ 342 (358)
++++++ ++.+++..
T Consensus 245 ~~~~~~-----~~~~~~~~ 258 (390)
T 1d2f_A 245 GIIENS-----SSRDAYLS 258 (390)
T ss_dssp EEECSH-----HHHHHHHH
T ss_pred EEECCH-----HHHHHHHH
Confidence 998654 56555544
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-17 Score=163.68 Aligned_cols=165 Identities=13% Similarity=0.114 Sum_probs=117.0
Q ss_pred HHHHHHHHHHcCCCCCCCcceEEeC-CCHHHHHHHHHHhccCCCE---EEecCCCCCcccccccccchhccccCCceEE-
Q 018300 151 TLCQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYTAILKPHDR---IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE- 225 (358)
Q Consensus 151 ~~~~~~la~lfg~~~~~~~v~V~~~-SGt~A~~~a~~all~pGD~---Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~- 225 (358)
+.+++++++++|++++ +|.++ ++|.++..++.++++|||+ |++.++.|.+... .+. ..+...|..+.
T Consensus 114 ~~l~~~la~~~g~~~~----~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~-~~~---~~~~~~G~~~~~ 185 (465)
T 3e9k_A 114 ESIVGLMKDIVGANEK----EIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHY-AIE---SQLQLHGLNIEE 185 (465)
T ss_dssp HHHHGGGHHHHTCCGG----GEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHH-HHH---HHHHHTTCCHHH
T ss_pred HHHHHHHHHHcCCCcC----CEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHH-HHH---HHHHHcCCccee
Confidence 3467789999999864 34445 5566999999999877665 9999887655321 010 01223443221
Q ss_pred --EEeceecCCCCCCCHHHHHHHhhh--cCCeEEEEcCCC--CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 226 --SMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 226 --~~~~~~~~~~~~iD~d~le~~i~~--~~~klIi~~~s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
+...+.+ +++.+|++++++.+++ .++++|++...+ +|...|+++|.++|+++|+++++|++|+.|.. +
T Consensus 186 ~~v~~~~~~-~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~-----~ 259 (465)
T 3e9k_A 186 SMRMIKPRE-GEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNV-----E 259 (465)
T ss_dssp HEEEECCCT-TCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTS-----C
T ss_pred eeEEEecCC-CCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCc-----C
Confidence 1112233 4568999999999863 267888876654 46789999999999999999999999997754 2
Q ss_pred CCCC--CCcEEEEcCcCcC-ccCcE-EEEEEeCC
Q 018300 300 DPFK--YCDVVTTTTHKSL-RGPRG-GMIFFKKD 329 (358)
Q Consensus 300 ~pl~--gaDiv~~S~hK~L-~Gp~G-G~I~~~~~ 329 (358)
..+. ++|++++|+||+| .||.| |+++.+++
T Consensus 260 ~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~ 293 (465)
T 3e9k_A 260 LYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEK 293 (465)
T ss_dssp CCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGG
T ss_pred CchhhcCCCEEEECcccccccCCCceEEEEEcHH
Confidence 2333 8999999999999 48876 88888774
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-15 Score=148.29 Aligned_cols=223 Identities=11% Similarity=0.115 Sum_probs=139.2
Q ss_pred ccccChHHHHHHHHHHHHhh-----hccccccc-------CCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHH
Q 018300 83 LGEADPEVCEIITKEKERQF-----KSLELIAS-------ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELE 150 (358)
Q Consensus 83 l~~~d~~~~~~i~~e~~~~~-----~~i~lias-------~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE 150 (358)
.+..++.++.++++.+.... .-++|-.+ +..+++.|.+++....... ..+|+. ..|.. +++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~---~~g~~---~lr 86 (418)
T 3rq1_A 14 GKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSE-HVGYAP---IAGIP---DFL 86 (418)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHH-HHSCCC---TTCCH---HHH
T ss_pred CCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhcccc-cCCCCC---CCChH---HHH
Confidence 45566677777766544433 23454433 4457888999986643211 123332 12333 455
Q ss_pred HHHHHHHHHHcCCCCCCCcceE-EeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEec
Q 018300 151 TLCQKRALAAFNLDENKWGVNV-QPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY 229 (358)
Q Consensus 151 ~~~~~~la~lfg~~~~~~~v~V-~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~ 229 (358)
+.+.+++....+.+.. .+| ++.+|++|+..++.++++|||+|+++++.|.++.. .+...|. +++++
T Consensus 87 ~~ia~~~~~~~~~~~~---~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v 153 (418)
T 3rq1_A 87 CAAEKECFGNFRPEGH---IRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRV--------ICSDTGR--TLVTY 153 (418)
T ss_dssp HHHHHHHHGGGCCSSE---EEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEE
T ss_pred HHHHHHHhcccCcccc---ccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHH--------HHHHcCC--EEEEE
Confidence 5555555555554421 134 44556679999999999999999999887665432 2345565 45555
Q ss_pred eecCCCCCCCHHHHHHHhhhc---CCe-EEEEcCC-CC--CCCCCHHH---HHHHHH------HcCCEEEEecccccccc
Q 018300 230 RLDESTGLVDYDMLEKTAILF---RPK-LIIAGAS-AY--PRDFDYPR---MRQIAD------AVGALLMMDMAHISGLV 293 (358)
Q Consensus 230 ~~~~~~~~iD~d~le~~i~~~---~~k-lIi~~~s-~~--~~~~dl~~---I~~ia~------e~g~~livD~Ah~~Gl~ 293 (358)
+++++++.+|++++++.+++. +++ +|+++.+ ++ |...+.++ |+++|+ ++|+++++|++|. ++.
T Consensus 154 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~-~~~ 232 (418)
T 3rq1_A 154 SLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYL-DYS 232 (418)
T ss_dssp CSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTG-GGS
T ss_pred eeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccc-ccc
Confidence 565455689999999988652 566 6777655 54 45667554 555666 8999999999984 554
Q ss_pred ccCCcc----CCCC--CCc---EEEEcCcCcC--ccCcEEEEEE
Q 018300 294 AASVVA----DPFK--YCD---VVTTTTHKSL--RGPRGGMIFF 326 (358)
Q Consensus 294 ~~g~~~----~pl~--gaD---iv~~S~hK~L--~Gp~GG~I~~ 326 (358)
..+... ...+ ..| +++.|++|++ +|.|.|++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~ 276 (418)
T 3rq1_A 233 GEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIG 276 (418)
T ss_dssp SCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEE
T ss_pred CChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEE
Confidence 432211 1111 123 7789999986 5678899988
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.6e-16 Score=147.80 Aligned_cols=208 Identities=13% Similarity=0.090 Sum_probs=138.3
Q ss_pred hcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCC--CCCCcceEEeCCCH
Q 018300 103 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS 178 (358)
Q Consensus 103 ~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~--~~~~~v~V~~~SGt 178 (358)
.-+++...++ .+++.|++++...+.+. ..+|+. . |. ++++.+.+++.+.+|.+ .+ ..+++++|+
T Consensus 24 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-~---~~----~lr~~la~~~~~~~~~~~~~~---~i~~t~g~~ 91 (377)
T 3fdb_A 24 GVLPLWVAESDFSTCPAVLQAITDAVQRE-AFGYQP-D---GS----LLSQATAEFYADRYGYQARPE---WIFPIPDVV 91 (377)
T ss_dssp TSEECCSSCCCSCCCHHHHHHHHHHHHTT-CCSSCC-S---SC----CHHHHHHHHHHHHHCCCCCGG---GEEEESCHH
T ss_pred CeeeecccCCCCCCCHHHHHHHHHHHHcC-CCCCCC-C---CH----HHHHHHHHHHHHHhCCCCCHH---HEEEeCChH
Confidence 4456654444 46899999998877642 224443 1 22 35665666666666643 32 234455667
Q ss_pred HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEc
Q 018300 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258 (358)
Q Consensus 179 ~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~ 258 (358)
+|+..++.++++|||+|++.++.|.++.. .+...|.. +++++++++ +|++++++.++. ++++|++.
T Consensus 92 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~--~~~~~~~~~---~d~~~l~~~l~~-~~~~v~i~ 157 (377)
T 3fdb_A 92 RGLYIAIDHFTPAQSKVIVPTPAYPPFFH--------LLSATQRE--GIFIDATGG---INLHDVEKGFQA-GARSILLC 157 (377)
T ss_dssp HHHHHHHHHHSCTTCCEEEEESCCTHHHH--------HHHHHTCC--EEEEECTTS---CCHHHHHHHHHT-TCCEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCcHhHHH--------HHHHcCCE--EEEccCCCC---CCHHHHHHHhcc-CCCEEEEe
Confidence 89999999999999999998876665421 23344553 445556543 999999999875 57888776
Q ss_pred CCCCC--CCC---CHHHHHHHHHHcCCEEEEeccccccccccC-CccCCCC-----CCcEEEEcCcCcC--ccCcEEEEE
Q 018300 259 ASAYP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAAS-VVADPFK-----YCDVVTTTTHKSL--RGPRGGMIF 325 (358)
Q Consensus 259 ~s~~~--~~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g-~~~~pl~-----gaDiv~~S~hK~L--~Gp~GG~I~ 325 (358)
.++++ ... ++++|+++|+++|+++++|++|+. +...+ ..+.++. +.++++.|++|++ +|.+.|+++
T Consensus 158 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~ 236 (377)
T 3fdb_A 158 NPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAP-LVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQII 236 (377)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGG-GBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccch-hhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEE
Confidence 65554 455 477788889999999999999884 33333 2222222 2348899999998 566779877
Q ss_pred EeCCCCchhHHHHHHhh
Q 018300 326 FKKDPVLGVELESAINN 342 (358)
Q Consensus 326 ~~~~~~~~~~~~~~i~~ 342 (358)
..++ ++.+++..
T Consensus 237 ~~~~-----~~~~~~~~ 248 (377)
T 3fdb_A 237 FSNP-----SDAEHWQQ 248 (377)
T ss_dssp CCSH-----HHHHHHHH
T ss_pred eCCH-----HHHHHHHH
Confidence 7544 56666654
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-16 Score=168.52 Aligned_cols=160 Identities=15% Similarity=0.070 Sum_probs=115.4
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~ 231 (358)
++++++++||++.. +++++|| .||.+++.++++|||+|++..+.|.++. ..+.+.|.. +++++.
T Consensus 200 aE~~lA~~fGa~~a-----~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~--------~~l~lsGa~--pv~v~~ 264 (715)
T 3n75_A 200 AEQYIARVFNADRS-----YMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLT--------HLMMMSDVT--PIYFRP 264 (715)
T ss_dssp HHHHHHHHHTCSEE-----EEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHH--------HHHHHSCCE--EEEECC
T ss_pred HHHHHHHHhCCCCc-----eEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHH--------HHHHHcCCE--EEEEec
Confidence 56678999999873 5667885 7999999999999999999987554432 134566764 344333
Q ss_pred cCCCC----CC-----CHHHHHHHhhhc-CCe---EEEE-cCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCC
Q 018300 232 DESTG----LV-----DYDMLEKTAILF-RPK---LIIA-GASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASV 297 (358)
Q Consensus 232 ~~~~~----~i-----D~d~le~~i~~~-~~k---lIi~-~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~ 297 (358)
+.++. .+ |+++|++.+++. ++| ++++ +++.+|...|+++|.++|++++ +++|+||+.|+.+.+.
T Consensus 265 ~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~pn~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~ 342 (715)
T 3n75_A 265 TRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPI 342 (715)
T ss_dssp CBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESSCTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGG
T ss_pred cccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECCCCCCccCCHHHHHHHhCcCc--EEEccccccccccCCc
Confidence 22222 24 899999998753 233 5555 4444688899999999998764 7999999988654433
Q ss_pred cc--CCCC-C--CcEE---EEcCcCcCccC-cEEEEEEeCC
Q 018300 298 VA--DPFK-Y--CDVV---TTTTHKSLRGP-RGGMIFFKKD 329 (358)
Q Consensus 298 ~~--~pl~-g--aDiv---~~S~hK~L~Gp-~GG~I~~~~~ 329 (358)
.+ +++. + +|++ ++|+||+|+|+ +||+|+++++
T Consensus 343 ~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~ 383 (715)
T 3n75_A 343 YEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD 383 (715)
T ss_dssp GTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESC
T ss_pred cccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCch
Confidence 32 3343 3 6866 99999999998 6799998876
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=149.97 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=111.8
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~ 232 (358)
+++++++++|.+. .+++.||++|+..++.+++++||+|+++++.|+++..... ..+...|. ++..+++
T Consensus 61 l~~~la~~~g~~~-----~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~----~~~~~~g~--~~~~~~~- 128 (412)
T 2cb1_A 61 LEERLKALEGALE-----AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFG----QVLSLMGV--TVRYVDP- 128 (412)
T ss_dssp HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHH----HTTTTTTC--EEEEECS-
T ss_pred HHHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH----HHHHHcCC--EEEEECC-
Confidence 4556889999863 3667889999999999999999999999987765422100 01233454 4444332
Q ss_pred CCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEE
Q 018300 233 ESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVT 309 (358)
Q Consensus 233 ~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~ 309 (358)
|++++++.+++ ++++|++..+++ |...|+++|.++|+++|+++++|++|+.+.. ...+++ ++|+++
T Consensus 129 ------~~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~----~~~~~~~~~di~~ 197 (412)
T 2cb1_A 129 ------EPEAVREALSA-KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGA----LCRPLAWGAHVVV 197 (412)
T ss_dssp ------SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTT----SCCGGGGTCSEEE
T ss_pred ------CHHHHHHHhcc-CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccc----cCCccccCCeEEE
Confidence 38999998864 788888866554 5688999999999999999999999986611 113444 799999
Q ss_pred EcCcCcCccCc---EEEEEEeC
Q 018300 310 TTTHKSLRGPR---GGMIFFKK 328 (358)
Q Consensus 310 ~S~hK~L~Gp~---GG~I~~~~ 328 (358)
+|+||++.||. ||+++.++
T Consensus 198 ~S~~K~~~~~~~~~G~~~~~~~ 219 (412)
T 2cb1_A 198 ESLTKWASGHGSVLGGAVLSRE 219 (412)
T ss_dssp EETTTTTTCSSCCCCEEEEECC
T ss_pred ECCcccccCCCCcEEEEEEecc
Confidence 99999998764 45555553
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=154.18 Aligned_cols=200 Identities=14% Similarity=0.054 Sum_probs=133.9
Q ss_pred CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh---
Q 018300 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--- 188 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--- 188 (358)
...++.|++++.....|... . .+...+...++|+.+++++++++|.+..+ ..+++++||+||..++.+.
T Consensus 110 ~~~~~~v~~~~~~~~~n~~~----~--~~~~~~~~~~le~~~~~~la~~~g~~~~~--~~~~t~ggt~a~~~al~~ar~~ 181 (497)
T 2qma_A 110 PPLMPAVAAEAMIAALNQSM----D--SWDQASSATYVEQKVVNWLCDKYDLSEKA--DGIFTSGGTQSNQMGLMLARDW 181 (497)
T ss_dssp CCBHHHHHHHHHHHHHCCCT----T--CGGGCHHHHHHHHHHHHHHHHHTTCCTTC--EEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhhcccc----c--chhhChHHHHHHHHHHHHHHHHhCCCCCC--CeEEcCCchHHHHHHHHHHHHH
Confidence 45688888888665554311 1 12233456789999999999999996422 2456677888999988773
Q ss_pred -c---------cC------CC-EEEecCCCCCcccccccccchhccccCCceE-EEEeceecCCCCCCCHHHHHHHhhhc
Q 018300 189 -L---------KP------HD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILF 250 (358)
Q Consensus 189 -l---------~p------GD-~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~iD~d~le~~i~~~ 250 (358)
+ ++ || +|++++..|.+.. +.+...|... +++.++++ +++.+|+++|++.+++.
T Consensus 182 ~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~--------~~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~ 252 (497)
T 2qma_A 182 IADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQ--------KSASWMGLGEKAVMTVDAN-ADGTMDITKLDEVIAQA 252 (497)
T ss_dssp HHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHH--------HHHHHTTSCGGGEEEECBC-TTSSBCGGGHHHHHHHH
T ss_pred HHHhhcccchhhcccccccCCeEEEECCCchHHHH--------HHHHHcCCCcccEEEEecC-CCCcCCHHHHHHHHHHH
Confidence 3 13 46 7888776554321 1223333311 23344455 46789999999988653
Q ss_pred ---CCe--EEEEcCCC--CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCcc---CCCCCCcEEEEcCcCcCccCc
Q 018300 251 ---RPK--LIIAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPR 320 (358)
Q Consensus 251 ---~~k--lIi~~~s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~---~pl~gaDiv~~S~hK~L~Gp~ 320 (358)
.++ +|++...+ .|...|+++|.++|+++|+++++|++|+.+..... .. ..++++|++++|+||++.+|.
T Consensus 253 ~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p~ 331 (497)
T 2qma_A 253 KAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQTI 331 (497)
T ss_dssp HHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCCS
T ss_pred HHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCCc
Confidence 233 55554333 56788999999999999999999999986654322 11 112368999999999998886
Q ss_pred E-EEEEEeCC
Q 018300 321 G-GMIFFKKD 329 (358)
Q Consensus 321 G-G~I~~~~~ 329 (358)
+ |+++++++
T Consensus 332 ~~G~l~~~~~ 341 (497)
T 2qma_A 332 SCGALLVNDK 341 (497)
T ss_dssp SCEEEEESCG
T ss_pred ceEEEEEeCH
Confidence 4 88888765
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-15 Score=150.45 Aligned_cols=235 Identities=12% Similarity=0.031 Sum_probs=145.5
Q ss_pred hhcccccccChHHHHHHHHHHHHhhhccccccc----CCCCcHHHHHHHhhhhhccc--CCCCCCCcCCCCcHHHHHHHH
Q 018300 78 FVDYSLGEADPEVCEIITKEKERQFKSLELIAS----ENFTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELET 151 (358)
Q Consensus 78 ~~~~~l~~~d~~~~~~i~~e~~~~~~~i~lias----~n~~s~~V~~al~~~l~~~~--~~G~pg~r~~~G~~~~~~lE~ 151 (358)
+++++.+...+..+..+.+... ...-|+|-.+ +.++++.+.+++...+.+.. ..+|+. ..|. .++++
T Consensus 53 ~~s~~~~~~~~s~~~~~~~~~~-~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~---~~g~---~~lr~ 125 (448)
T 3aow_A 53 FFSKKALEMRASEVRELLKLVE-TSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGT---TKGF---TPLRE 125 (448)
T ss_dssp GCCHHHHHCCCCHHHHHHHHHH-TSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCC---TTCC---HHHHH
T ss_pred HhhHHHhcCCCcHHHHHHHhcc-CCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCC---CCCc---HHHHH
Confidence 3455555555554433333221 2344555322 22367788888877665421 123322 1122 25666
Q ss_pred HHHHHHHHHcCC-CCCCCcceEEeC-CCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEec
Q 018300 152 LCQKRALAAFNL-DENKWGVNVQPL-SGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY 229 (358)
Q Consensus 152 ~~~~~la~lfg~-~~~~~~v~V~~~-SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~ 229 (358)
.+.+++.+.+|. +++ +|+++ +|++|+..++.++++|||+|++.++.|.++.. .+...|. +++.+
T Consensus 126 ~ia~~~~~~~g~~~~~----~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v 191 (448)
T 3aow_A 126 TLMKWLGKRYGISQDN----DIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQ--------AFNFYEP--QYIQI 191 (448)
T ss_dssp HHHHHHHHHHCCCTTS----EEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTCC--EEEEE
T ss_pred HHHHHHHHhcCcCChh----hEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEe
Confidence 666666666698 442 34445 45679999999999999999999876655421 2334565 44555
Q ss_pred eecCCCCCCCHHHHHHHhh----h-cCCeEEEE-cCCCC--CCCCC---HHHHHHHHHHcCCEEEEeccccccccccCCc
Q 018300 230 RLDESTGLVDYDMLEKTAI----L-FRPKLIIA-GASAY--PRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV 298 (358)
Q Consensus 230 ~~~~~~~~iD~d~le~~i~----~-~~~klIi~-~~s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~ 298 (358)
+.++ + .+|+++|++.++ . .++|+|++ ..+++ |...+ +++|.++|+++|++||+|++|+.+ ...+..
T Consensus 192 ~~~~-~-g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~-~~~g~~ 268 (448)
T 3aow_A 192 PLDD-E-GMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGEL-RYSGNP 268 (448)
T ss_dssp EEET-T-EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTC-BCSSCC
T ss_pred ccCC-C-CCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccc-cCCCCC
Confidence 5664 2 389999999886 3 26888754 44444 44555 578999999999999999998754 333321
Q ss_pred cCCC---C--CCcEEEEcCcCcCc-cCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 299 ADPF---K--YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 299 ~~pl---~--gaDiv~~S~hK~L~-Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+.++ + +.++++.|++|+|+ |.|.|++++++ ++.+++..
T Consensus 269 ~~~~~~~~~~~~vi~~~S~SK~~~~GlriG~v~~~~------~l~~~l~~ 312 (448)
T 3aow_A 269 EKKIKALDNEGRVIYLGTFSKILAPGFRIGWMVGDP------GIIRKMEI 312 (448)
T ss_dssp CCCTGGGCTTSCEEEEEESTTTTCGGGCCEEEEECH------HHHHHHHH
T ss_pred CcCHHhcCCCCCEEEEccchhhccccccEEEEEeCH------HHHHHHHH
Confidence 1122 2 45688999999985 45679999986 45555543
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-16 Score=151.99 Aligned_cols=191 Identities=17% Similarity=0.140 Sum_probs=124.3
Q ss_pred CCCCcHHHHHHHhhhhhcccCCCCCCC--cCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh
Q 018300 111 ENFTSRAVMEAVGSCLTNKYSEGLPGK--RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 111 ~n~~s~~V~~al~~~l~~~~~~G~pg~--r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al 188 (358)
..+.++.|++++...+...+ +++.. ++..+.. +.++ .+++++++++|+++++ .+++.+|+.++..++.++
T Consensus 37 ~~~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~~~~--~~~~-~l~~~la~~~g~~~~~---v~~~~g~t~al~~al~~~ 108 (416)
T 1qz9_A 37 LGARPVAALARAQAVIAEEW--GNGLIRSWNSAGWR--DLSE-RLGNRLATLIGARDGE---VVVTDTTSINLFKVLSAA 108 (416)
T ss_dssp SCCCBTTHHHHHHHHHHTCC--CCCGGGHHHHTSGG--GHHH-HHHHHHHTTTTCCTTS---EEECSCHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHH--hccCccccchhhHH--HHHH-HHHHHHHHHcCCCccc---EEEeCChhHHHHHHHHhh
Confidence 34678899999988776543 22221 1111211 2233 3677899999997532 233445566887888877
Q ss_pred c------cCCCEE-EecCCCCCcccccccccchhccccC--CceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC
Q 018300 189 L------KPHDRI-MGLDLPHGGHLSHGFMTPKRRVSGT--SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (358)
Q Consensus 189 l------~pGD~V-l~~~~~~ggh~s~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~ 259 (358)
+ +|||+| ++.+..|+++..... ...... |. +++.+++ +++|++.+.. ++++|++..
T Consensus 109 ~~~~~~~~~gd~vii~~~~~~~~~~~~~~----~~~~~~~~g~--~~~~v~~--------~~~l~~~i~~-~~~~v~~~~ 173 (416)
T 1qz9_A 109 LRVQATRSPERRVIVTETSNFPTDLYIAE----GLADMLQQGY--TLRLVDS--------PEELPQAIDQ-DTAVVMLTH 173 (416)
T ss_dssp HHHHHHHSTTCCEEEEETTSCHHHHHHHH----HHHHHHCSSC--EEEEESS--------GGGHHHHCST-TEEEEEEES
T ss_pred cccccccCCCCcEEEEcCCCCCchHHHHH----HHHHHhcCCc--eEEEeCc--------HHHHHHHhCC-CceEEEEec
Confidence 5 899975 444445544321000 001112 54 3444322 6788888764 788888766
Q ss_pred CCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcC-ccCcE-EEEEEeCC
Q 018300 260 SAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL-RGPRG-GMIFFKKD 329 (358)
Q Consensus 260 s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L-~Gp~G-G~I~~~~~ 329 (358)
+++ |...|+++|.++|+++|+++++|++|+.|.. +.++. ++|++++|+||+| +|+++ |+++++++
T Consensus 174 ~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-----~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~ 244 (416)
T 1qz9_A 174 VNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAV-----PVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQ 244 (416)
T ss_dssp BCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTS-----CCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTT
T ss_pred cccCcccccCHHHHHHHHHHcCCEEEEEccccccCc-----CCChhhcCCCEEEecCcccCCCCCCCeEEEEECHH
Confidence 554 6688999999999999999999999986543 22232 6899999999997 56788 99999875
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.7e-16 Score=147.44 Aligned_cols=205 Identities=14% Similarity=0.101 Sum_probs=131.3
Q ss_pred ccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHH
Q 018300 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (358)
Q Consensus 105 i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a 184 (358)
-.|..+.++..+.+++++...+. +..+...|+..+...+++ +++++++|.+. .++++||+.|+..+
T Consensus 13 ~~l~~~~~p~~~~~~~~~~~~~~-----~~~~~~~y~~~~~~~~l~----~~la~~~~~~~-----~i~~~~G~~a~~~a 78 (357)
T 3lws_A 13 TGQISGHGKRNVGVLKTAFAAVA-----DEMASDQYGTGAIIEPFE----QKFADVLGMDD-----AVFFPSGTMAQQVA 78 (357)
T ss_dssp SEESSBSSCCBHHHHHHHHTTSC-----TTCBCEETTEETTHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHHHHhh-----cccCcccccCChHHHHHH----HHHHHHhCCCc-----EEEecCcHHHHHHH
Confidence 34556777777777766654221 111222333334444444 45888999865 36678999999999
Q ss_pred HHHhccCCC--EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC
Q 018300 185 YTAILKPHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262 (358)
Q Consensus 185 ~~all~pGD--~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~ 262 (358)
+.++++||| .|++.+..|....... ......|. ++++++. +++.+|++++++.. ++++|++..+++
T Consensus 79 l~~~~~~gd~~~vi~~~~~~~~~~~~~-----~~~~~~g~--~~~~v~~--~~~~~d~~~l~~~~---~~~~v~~~~p~n 146 (357)
T 3lws_A 79 LRIWSDETDNRTVAYHPLCHLEIHEQD-----GLKELHPI--ETILVGA--ADRLMTLDEIKALP---DIACLLLELPQR 146 (357)
T ss_dssp HHHHHHHHTCCEEEECTTCHHHHSSTT-----HHHHHSSC--EEEECSC--TTSCCCHHHHHTCC---SCSEEEEESSBG
T ss_pred HHHHhhcCCCcEEEecccceeeeeccc-----hhhhccCc--EEEEecC--CCCCcCHHHHhcCc---CcceEEEEcccc
Confidence 999999998 6776554322211100 01223354 4455443 45689999999863 388888876653
Q ss_pred ---CCCC---CHHHHHHHHHHcCCEEEEeccccccccc-cCCccCCC-CCCcEEEEcCcCcCccCcEEEEEEeCCCCchh
Q 018300 263 ---PRDF---DYPRMRQIADAVGALLMMDMAHISGLVA-ASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGV 334 (358)
Q Consensus 263 ---~~~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~-~g~~~~pl-~gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~ 334 (358)
|... ++++|.++|+++|++|++|++|..+... .+.....+ .++|++++|+||+|+||.||+++.++
T Consensus 147 p~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~------ 220 (357)
T 3lws_A 147 EIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPA------ 220 (357)
T ss_dssp GGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSSCEEEEECH------
T ss_pred cCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCceEEEEcCH------
Confidence 5555 4889999999999999999998733211 11111112 26799999999999899999998876
Q ss_pred HHHHHHh
Q 018300 335 ELESAIN 341 (358)
Q Consensus 335 ~~~~~i~ 341 (358)
++.+++.
T Consensus 221 ~~~~~~~ 227 (357)
T 3lws_A 221 AFCQTAR 227 (357)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555554
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=153.24 Aligned_cols=197 Identities=14% Similarity=0.062 Sum_probs=131.6
Q ss_pred cHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCC------CcceEEeCCCHHHHHHHHHHh
Q 018300 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENK------WGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 115 s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~------~~v~V~~~SGt~A~~~a~~al 188 (358)
+..+.+++...+ +.+..+ |...+...++|+.+++++++++|.+... .+..+++.+||+||+.++.++
T Consensus 87 ~~~~~~~~~~~~-n~~~~~------~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~ 159 (486)
T 1js3_A 87 PAMLADMLCGAI-GCIGFS------WAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAA 159 (486)
T ss_dssp HHHHHHHHHHHH-CCCCSS------GGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CcCccc------cccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHH
Confidence 444666666554 332211 2233556789999999999999998521 012356778889999988775
Q ss_pred ccC---------CC--------E--EEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh
Q 018300 189 LKP---------HD--------R--IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL 249 (358)
Q Consensus 189 l~p---------GD--------~--Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~ 249 (358)
..+ || + |+++++.|.+. . +.+...|.. ++.++++ +++.+|+++|++.+++
T Consensus 160 ~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~---~-----~~~~~~G~~--v~~v~~d-~~~~~d~~~L~~~i~~ 228 (486)
T 1js3_A 160 RTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSV---E-----RAGLIGGVK--LKAIPSD-GKFAMRASALQEALER 228 (486)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHH---H-----HHHHHHTCE--EEEECCC-TTSCCCHHHHHHHHHH
T ss_pred HHHHhhhhhccCccchhcccCCCEEEEECCCCcHHH---H-----HHHHhCCCc--eEEeecC-CCCCCCHHHHHHHHHH
Confidence 321 53 3 66676644332 1 234455764 4445565 4679999999999865
Q ss_pred cC-----CeEEEEcCC--CCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccC---CCCCCcEEEEcCcCcCccC
Q 018300 250 FR-----PKLIIAGAS--AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD---PFKYCDVVTTTTHKSLRGP 319 (358)
Q Consensus 250 ~~-----~klIi~~~s--~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~---pl~gaDiv~~S~hK~L~Gp 319 (358)
.+ |.+|++..+ .+|...|+++|.++|+++|+++++|+||+.+....+.... .++++|++++++||++.+|
T Consensus 229 ~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p 308 (486)
T 1js3_A 229 DKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN 308 (486)
T ss_dssp HHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC
T ss_pred HHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC
Confidence 32 236655443 3577889999999999999999999999866543221111 1237899999999999877
Q ss_pred cE-EEEEEeCC
Q 018300 320 RG-GMIFFKKD 329 (358)
Q Consensus 320 ~G-G~I~~~~~ 329 (358)
.+ |+++++++
T Consensus 309 ~~~G~l~~~~~ 319 (486)
T 1js3_A 309 FDCSAMWVKRR 319 (486)
T ss_dssp SSCEEEEESCH
T ss_pred cceEEEEEeCH
Confidence 54 88888775
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-16 Score=151.50 Aligned_cols=201 Identities=13% Similarity=0.075 Sum_probs=127.9
Q ss_pred cccccccCCCCcHHHHHHHhhhhhcccCCCCC-CCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEe-CCCHHHH
Q 018300 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLP-GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGSPAN 181 (358)
Q Consensus 104 ~i~lias~n~~s~~V~~al~~~l~~~~~~G~p-g~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~-~SGt~A~ 181 (358)
.+.+.+++..+|+.|++++...+.+.+..|.. ....+.+... .++.+.+++++++++|++.+ .. .+++ .+|++|+
T Consensus 5 ~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~g~~~~-~~-~i~~t~g~t~a~ 81 (362)
T 2c0r_A 5 AYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVY-EAVHNEAQARLLALLGNPTG-YK-VLFIQGGASTQF 81 (362)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHH-HHHHHHHHHHHHHHTTCCSS-EE-EEEESSHHHHHH
T ss_pred eeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHH-HHHHHHHHHHHHHHhCCCCC-cE-EEEECCCchHHH
Confidence 35667888999999999998877543221111 0001112333 33444588999999999752 11 2344 5677899
Q ss_pred HHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCC-CCCHHHHHHHhhhcCCeEEEEcCC
Q 018300 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG-LVDYDMLEKTAILFRPKLIIAGAS 260 (358)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~iD~d~le~~i~~~~~klIi~~~s 260 (358)
..++.++++|||+|+++++ +++.+.+. ..+...| .+..++++.+.+.+ .+|.++++ +. .++|+|++..+
T Consensus 82 ~~~~~~l~~~gd~vl~~~~---~~~~~~~~---~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~-~~t~~v~~~~~ 151 (362)
T 2c0r_A 82 AMIPMNFLKEGQTANYVMT---GSWASKAL---KEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ-DNAAYLHLTSN 151 (362)
T ss_dssp HHHHHHHCCTTCEEEEEEC---SHHHHHHH---HHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC-TTEEEEEEESE
T ss_pred HHHHHhcCCCCCeEEEEec---CcHhHHHH---HHHHHhC-CeEEEecccccccccCCCHHHcc--cC-CCcCEEEEeCC
Confidence 9999999999999988754 23332110 1223346 55555543211122 46776654 43 36888877654
Q ss_pred C--CCCC-CCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 261 A--YPRD-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 261 ~--~~~~-~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+ +|.. .|+++| +|+++++|++|+.|.. +.++...|++++|+||++ ||.| |+++++++
T Consensus 152 ~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~-----~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~ 212 (362)
T 2c0r_A 152 ETIEGAQFKAFPDT------GSVPLIGDMSSDILSR-----PFDLNQFGLVYAGAQKNL-GPSGVTVVIVRED 212 (362)
T ss_dssp ETTTTEECSSCCCC------TTSCEEEECTTTTTSS-----CCCGGGCSEEEEETTTTT-CCSSCEEEEEEGG
T ss_pred cCccceeccccccc------CCCEEEEEChhhccCC-----ccchhHCcEEEEeccccc-cCcCcEEEEEcHH
Confidence 4 3443 567766 8999999999987642 222334599999999998 5877 99999875
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-16 Score=165.82 Aligned_cols=164 Identities=15% Similarity=0.088 Sum_probs=116.9
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhc-cccCCceEEEEece
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRR-VSGTSIYFESMPYR 230 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~-~~~~g~~~~~~~~~ 230 (358)
++++++++||++. .+++++|+ .||.+++.++++|||+|++..+.|.++.. . +.+.|..+..++..
T Consensus 178 ~e~~lA~~~gae~-----~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~--------~~~~l~Ga~~v~v~~~ 244 (730)
T 1c4k_A 178 AEKHAARVYNADK-----TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYN--------SALAMAGGRPVYLQTN 244 (730)
T ss_dssp HHHHHHHHTTCSE-----EEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHH--------HHTTTTCCEEEEECEE
T ss_pred HHHHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHH--------HHHHHCCCEEEEEeCC
Confidence 5677999999986 25667776 69999999999999999999876654321 2 34566644333322
Q ss_pred ecCC--CCCCCHHHH-----HHHhhhcC-----C----eEEEEcCCC-CCCCCCHHHHHHHHHHcCCEEEEecccccccc
Q 018300 231 LDES--TGLVDYDML-----EKTAILFR-----P----KLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMAHISGLV 293 (358)
Q Consensus 231 ~~~~--~~~iD~d~l-----e~~i~~~~-----~----klIi~~~s~-~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~ 293 (358)
.+.. .+.+|+++| ++.+++.. + |+|++..++ +|...|+++|+++|+++|++|++|+||+.++.
T Consensus 245 ~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~ 324 (730)
T 1c4k_A 245 RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQ 324 (730)
T ss_dssp ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGG
T ss_pred ccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCCCCCeecCHHHHHHHHHHcCCeEEEEcccccccc
Confidence 2100 123677777 88876531 3 777775544 57788999999999999999999999986654
Q ss_pred ccCCcc--CCCC----CCc----EEEEcCcCcCccCc-EEEEEEeCC
Q 018300 294 AASVVA--DPFK----YCD----VVTTTTHKSLRGPR-GGMIFFKKD 329 (358)
Q Consensus 294 ~~g~~~--~pl~----gaD----iv~~S~hK~L~Gp~-GG~I~~~~~ 329 (358)
+.+..+ ++++ ++| ++++|+||+|+||+ ||+|+.+++
T Consensus 325 f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~ 371 (730)
T 1c4k_A 325 FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDS 371 (730)
T ss_dssp SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECG
T ss_pred cCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecch
Confidence 433221 2332 678 99999999999987 478877765
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-15 Score=145.66 Aligned_cols=197 Identities=17% Similarity=0.113 Sum_probs=128.0
Q ss_pred CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHc------C--CCCCCCcceEEeCCCHHHHHH
Q 018300 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF------N--LDENKWGVNVQPLSGSPANFE 183 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lf------g--~~~~~~~v~V~~~SGt~A~~~ 183 (358)
..+++.|++++...+......+|+. ..|. .++++.+.+++.+.| | ++.+ ..+++++|++|+..
T Consensus 49 ~~~~~~v~~a~~~~~~~~~~~~y~~---~~~~---~~lr~~la~~~~~~~~~~~~~~~~~~~~---~v~~~~g~~~al~~ 119 (416)
T 1bw0_A 49 LLTSAAQIKKLKEAIDSQECNGYFP---TVGS---PEAREAVATWWRNSFVHKEELKSTIVKD---NVVLCSGGSHGILM 119 (416)
T ss_dssp SCCCHHHHHHHHHHHHTTCSSSCCC---TTCC---HHHHHHHHHHHHHHHCCSTTTGGGCCGG---GEEEESHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhCCccCCcCC---CCCC---HHHHHHHHHHHHhhhcccccCCCCCCcc---eEEEeCChHHHHHH
Confidence 4578999999988775432223432 1122 245554444444221 1 3432 23444556779999
Q ss_pred HHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhhcCCeEEEEcCCCC
Q 018300 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAY 262 (358)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~~~~klIi~~~s~~ 262 (358)
++.++++|||+|++.++.|.++.. .+...|.. ++.++++++ ++.+|+++|++.++. ++++|++..+++
T Consensus 120 ~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~~--~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~p~n 188 (416)
T 1bw0_A 120 AITAICDAGDYALVPQPGFPHYET--------VCKAYGIG--MHFYNCRPENDWEADLDEIRRLKDD-KTKLLIVTNPSN 188 (416)
T ss_dssp HHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTCE--EEEEEEEGGGTTEECHHHHHHHCCT-TEEEEEEESSCT
T ss_pred HHHHhCCCCCEEEEcCCCcHhHHH--------HHHHcCcE--EEEeecCcccCCCCCHHHHHHHhcc-CCeEEEEeCCCC
Confidence 999999999999999887665421 23345654 444445433 346899999998864 577776655554
Q ss_pred --CCCCC---HHHHHHHHHHcCCEEEEeccccccccccCC----ccCCC---C--CCcEEEEcCcCcC--ccCcEEEEEE
Q 018300 263 --PRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASV----VADPF---K--YCDVVTTTTHKSL--RGPRGGMIFF 326 (358)
Q Consensus 263 --~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~----~~~pl---~--gaDiv~~S~hK~L--~Gp~GG~I~~ 326 (358)
|...+ +++|.++|+++|++|++|++|+. +...+. ...++ + ..++++.|++|++ +|.|.|++++
T Consensus 189 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~ 267 (416)
T 1bw0_A 189 PCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAG-MVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLY 267 (416)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTT-CBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEE
T ss_pred CCCcccCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEEEEe
Confidence 45677 89999999999999999999885 443332 11122 2 2247789999996 5667899998
Q ss_pred eCC
Q 018300 327 KKD 329 (358)
Q Consensus 327 ~~~ 329 (358)
+++
T Consensus 268 ~~~ 270 (416)
T 1bw0_A 268 VDP 270 (416)
T ss_dssp ECT
T ss_pred eCc
Confidence 774
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.4e-15 Score=144.96 Aligned_cols=176 Identities=14% Similarity=0.096 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHcC----CCCCCCcceEEeCC-CHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCc
Q 018300 148 ELETLCQKRALAAFN----LDENKWGVNVQPLS-GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (358)
Q Consensus 148 ~lE~~~~~~la~lfg----~~~~~~~v~V~~~S-Gt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (358)
++++.+.+++.+.+| ++++ +|++++ +++|+..++.++++|||+|+++++.|.++... .....|.
T Consensus 87 ~lr~~la~~~~~~~g~~~~~~~~----~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~-------~~~~~g~ 155 (428)
T 1iay_A 87 EFRKAIAKFMEKTRGGRVRFDPE----RVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRD-------LRWRTGV 155 (428)
T ss_dssp HHHHHHHHHHHHHTTTCSCCCTT----SCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHH-------TTTTTCC
T ss_pred HHHHHHHHHHHHhcCCCCCCChh----hEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHH-------HHHhcCC
Confidence 566666666666666 4443 244444 55799999999999999999999877664210 1123455
Q ss_pred eEEEEeceecCC-CCCCCHHHHHHHhhh-----cCCeEEEEcCCCC--CCCCC---HHHHHHHHHHcCCEEEEecccccc
Q 018300 223 YFESMPYRLDES-TGLVDYDMLEKTAIL-----FRPKLIIAGASAY--PRDFD---YPRMRQIADAVGALLMMDMAHISG 291 (358)
Q Consensus 223 ~~~~~~~~~~~~-~~~iD~d~le~~i~~-----~~~klIi~~~s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~G 291 (358)
++++++.+++ +..+|++++++.++. .++++|++..+++ |...+ +++|.++|+++|++|++|++|..+
T Consensus 156 --~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~ 233 (428)
T 1iay_A 156 --QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAAT 233 (428)
T ss_dssp --EEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGG
T ss_pred --EEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEecccccc
Confidence 4455555533 336899999988764 2578777655554 56778 899999999999999999999743
Q ss_pred ccccCC-ccC--CCC-C-------Cc--EEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 292 LVAASV-VAD--PFK-Y-------CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 292 l~~~g~-~~~--pl~-g-------aD--iv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
...+. .++ .+. . .| +++.|+||+| +|.|.|++++.++ ++.+++..
T Consensus 234 -~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~-----~~~~~~~~ 293 (428)
T 1iay_A 234 -VFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFND-----DVVNCARK 293 (428)
T ss_dssp -CCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCH-----HHHHHHHH
T ss_pred -ccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCH-----HHHHHHHH
Confidence 32221 111 111 2 68 8899999998 5677899998543 56665554
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-15 Score=149.56 Aligned_cols=192 Identities=17% Similarity=0.121 Sum_probs=126.4
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pG 192 (358)
.+++.+++++... . . .|...+...++ ++.+++++|.+. .++++||++|+..++.++++||
T Consensus 55 ~~~~~~~~a~~~~-~----~------~y~~~~~~~~l----~~~la~~~~~~~-----~~~~~~gt~a~~~al~~l~~~g 114 (456)
T 2ez2_A 55 AMSDKQWAGMMMG-D----E------AYAGSENFYHL----ERTVQELFGFKH-----IVPTHQGRGAENLLSQLAIKPG 114 (456)
T ss_dssp CCCHHHHHHHTTC-C----C------CSSSCHHHHHH----HHHHHHHHCCSE-----EEEESSHHHHHHHHHHHHCCTT
T ss_pred cCCHHHHHHhhcc-h----h------hcccChhHHHH----HHHHHHHhCCCc-----EEEeCCcHHHHHHHHHHhCCCC
Confidence 4578888887521 0 1 12233333444 455788898764 4667889999999999999999
Q ss_pred CEEEecCCCC-CcccccccccchhccccCCceEEEEeceecC----C-----CCCCCHHHHHHHhhhcC---CeEEEEcC
Q 018300 193 DRIMGLDLPH-GGHLSHGFMTPKRRVSGTSIYFESMPYRLDE----S-----TGLVDYDMLEKTAILFR---PKLIIAGA 259 (358)
Q Consensus 193 D~Vl~~~~~~-ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~----~-----~~~iD~d~le~~i~~~~---~klIi~~~ 259 (358)
| +++++.| +.+. ..+...|. +++.+++++ + ++.+|+++|++.+++.. +++|++..
T Consensus 115 d--i~~~~~~~~~~~--------~~~~~~G~--~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~ 182 (456)
T 2ez2_A 115 Q--YVAGNMYFTTTR--------YHQEKNGA--VFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAV 182 (456)
T ss_dssp C--EEEESSCCHHHH--------HHHHHTTC--EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEES
T ss_pred C--EeccccccchhH--------HHHHHcCC--EEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEec
Confidence 9 5555544 2211 13345565 445555552 2 25789999999887532 37777764
Q ss_pred CC---CCCCCC---HHHHHHHHHHcCCEEEEecccccc---------ccccCCccC----CC-CCCcEEEEcCcCcCccC
Q 018300 260 SA---YPRDFD---YPRMRQIADAVGALLMMDMAHISG---------LVAASVVAD----PF-KYCDVVTTTTHKSLRGP 319 (358)
Q Consensus 260 s~---~~~~~d---l~~I~~ia~e~g~~livD~Ah~~G---------l~~~g~~~~----pl-~gaDiv~~S~hK~L~Gp 319 (358)
++ +|...+ +++|.++|+++|++|++|++|+.| +...+.... .+ ...|++++|+||++..+
T Consensus 183 p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~ 262 (456)
T 2ez2_A 183 TVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVN 262 (456)
T ss_dssp SBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCS
T ss_pred cCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCC
Confidence 43 345666 999999999999999999999875 333332100 01 25799888999986656
Q ss_pred cEEEEEEeCCCCchhHHHHHHh
Q 018300 320 RGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 320 ~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
+||+++++++ ++.+++.
T Consensus 263 ~gG~~~~~~~-----~~~~~~~ 279 (456)
T 2ez2_A 263 IGGFLCMNDD-----EMFSSAK 279 (456)
T ss_dssp SCEEEEESCH-----HHHHHHH
T ss_pred ceeEEEECCH-----HHHHHHH
Confidence 7899998544 5555543
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=147.47 Aligned_cols=196 Identities=15% Similarity=0.044 Sum_probs=127.0
Q ss_pred CcHHHHHHHhhhhhccc--CCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCC-CHHHHHHHHHHhcc
Q 018300 114 TSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS-GSPANFEVYTAILK 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~--~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~S-Gt~A~~~a~~all~ 190 (358)
.++.+.+++...+.... ..+|+.. .|. .++ ++.+++++|++++ +|.+++ |++|+..++.++++
T Consensus 48 ~~~~v~~a~~~~~~~~~~~~~~y~~~---~~~---~~l----~~~la~~~g~~~~----~v~~~~g~~~al~~~~~~~~~ 113 (397)
T 2zyj_A 48 PKEEAAEAAARILREKGEVALQYSPT---EGY---APL----RAFVAEWIGVRPE----EVLITTGSQQALDLVGKVFLD 113 (397)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCCCT---TCC---HHH----HHHHHHHHTSCGG----GEEEESHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhcchhhhCCCCC---CCC---HHH----HHHHHHHhCCChh----hEEEeccHHHHHHHHHHHhCC
Confidence 57789998877765321 1233221 122 234 4457778887653 344444 56699999999999
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEE-EcCCCC--CCCCC
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII-AGASAY--PRDFD 267 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi-~~~s~~--~~~~d 267 (358)
|||+|++.++.|.++.. .+...|. +++.++.++ ++ +|++++++.++..++++|+ +..+++ |...+
T Consensus 114 ~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~-~~-~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~ 181 (397)
T 2zyj_A 114 EGSPVLLEAPSYMGAIQ--------AFRLQGP--RFLTVPAGE-EG-PDLDALEEVLKRERPRFLYLIPSFQNPTGGLTP 181 (397)
T ss_dssp TTCEEEEEESCCHHHHH--------HHHTTCC--EEEEEEEET-TE-ECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCC
T ss_pred CCCEEEEeCCCcHHHHH--------HHHHcCC--EEEecCcCC-CC-CCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCC
Confidence 99999998876655321 2334565 344555554 33 8999999988755788874 444444 45666
Q ss_pred ---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCc------EEEEcCcCcCc-cCcEEEEEEeCCCCchhH
Q 018300 268 ---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCD------VVTTTTHKSLR-GPRGGMIFFKKDPVLGVE 335 (358)
Q Consensus 268 ---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaD------iv~~S~hK~L~-Gp~GG~I~~~~~~~~~~~ 335 (358)
+++|.++|+++|+++++|++|+.+. ..+..+.++. +.| +++.|+||+++ |.+.|++++++ +
T Consensus 182 ~~~l~~l~~~~~~~~~~li~De~~~~~~-~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~------~ 254 (397)
T 2zyj_A 182 LPARKRLLQMVMERGLVVVEDDAYRELY-FGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHP------E 254 (397)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECTTTTCB-CSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCH------H
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCccccc-CCCCCCCchhhhCcccCCCeEEEEecccccccccceeEEEecCH------H
Confidence 4589999999999999999998543 2232111221 223 88999999986 44669999886 4
Q ss_pred HHHHHhh
Q 018300 336 LESAINN 342 (358)
Q Consensus 336 ~~~~i~~ 342 (358)
+.+++..
T Consensus 255 ~~~~l~~ 261 (397)
T 2zyj_A 255 ALQKLVQ 261 (397)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-15 Score=148.32 Aligned_cols=176 Identities=16% Similarity=0.100 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHcC----CCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccc-cCCc
Q 018300 148 ELETLCQKRALAAFN----LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTSI 222 (358)
Q Consensus 148 ~lE~~~~~~la~lfg----~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~-~~g~ 222 (358)
++++.+.+++.+.++ ++.+ ..+++++|++|+..++.++++|||+|++.++.|.++.. .+. ..|.
T Consensus 90 ~l~~~la~~~~~~~~~~~~~~~~---~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~~g~ 158 (435)
T 3piu_A 90 AFKKAMVDFMAEIRGNKVTFDPN---HLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDR--------DLKWRTGV 158 (435)
T ss_dssp HHHHHHHHHHHHHTTTSSCCCGG---GEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HTTTTTCC
T ss_pred HHHHHHHHHHHHhhCCCCCCCHH---HEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHH--------HHHHhcCC
Confidence 566665555554444 4443 23455567789999999999999999999887665432 222 4565
Q ss_pred eEEEEeceecCCC-CCCCHHHHHHHhhh-----cCCeEEEEcCCCC--CCCCC---HHHHHHHHHHcCCEEEEecccccc
Q 018300 223 YFESMPYRLDEST-GLVDYDMLEKTAIL-----FRPKLIIAGASAY--PRDFD---YPRMRQIADAVGALLMMDMAHISG 291 (358)
Q Consensus 223 ~~~~~~~~~~~~~-~~iD~d~le~~i~~-----~~~klIi~~~s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~G 291 (358)
++++++.++++ ..+|+++|++.+++ .++++|++..+++ |...+ +++|.++|+++|+++++|++|+.+
T Consensus 159 --~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~ 236 (435)
T 3piu_A 159 --EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGT 236 (435)
T ss_dssp --EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG
T ss_pred --EEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecccccc
Confidence 44555555332 36899999998865 2678887765555 44544 578889999999999999999744
Q ss_pred ccccCCccCCC-C-----C-------Cc--EEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 292 LVAASVVADPF-K-----Y-------CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 292 l~~~g~~~~pl-~-----g-------aD--iv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
...+....++ . + .| +++.|+||+| +|.+.|+++++++ ++.+.+..
T Consensus 237 -~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~-----~~~~~~~~ 298 (435)
T 3piu_A 237 -AFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDD-----MVVAAATK 298 (435)
T ss_dssp -CCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCH-----HHHHHHHH
T ss_pred -ccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCH-----HHHHHHHH
Confidence 3332211111 1 1 22 8889999998 5678899999664 56555544
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=148.56 Aligned_cols=199 Identities=18% Similarity=0.102 Sum_probs=130.7
Q ss_pred CcHHHHHHHhhhhhccc--CCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC---CCCCCCcceEEeCC-CHHHHHHHHHH
Q 018300 114 TSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFN---LDENKWGVNVQPLS-GSPANFEVYTA 187 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~--~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg---~~~~~~~v~V~~~S-Gt~A~~~a~~a 187 (358)
+++.+.+++...+.... ..+|+.. .|. .++++.+.+++.+.+| ++++ +|.+++ |++|+..++.+
T Consensus 59 ~~~~v~~a~~~~~~~~~~~~~~y~~~---~g~---~~lr~~la~~l~~~~g~~~~~~~----~v~~t~G~~~al~~~~~~ 128 (425)
T 1vp4_A 59 PRKELAEIAKEIIEKEYHYTLQYSTT---EGD---PVLKQQILKLLERMYGITGLDED----NLIFTVGSQQALDLIGKL 128 (425)
T ss_dssp CHHHHHHHHHHHHHHSHHHHTSCCCT---TCC---HHHHHHHHHHHHHHHCCCSCCGG----GEEEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcchhhcCCCCC---CCC---HHHHHHHHHHHHhccCCCCCCcc----cEEEeccHHHHHHHHHHH
Confidence 56788998887765321 1233321 122 3566666666666668 4443 344454 56799999999
Q ss_pred hccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh-------cCCeEEE-EcC
Q 018300 188 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-------FRPKLII-AGA 259 (358)
Q Consensus 188 ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~-------~~~klIi-~~~ 259 (358)
+++|||+|++.++.|.++.. .+...|. +++++++++ + .+|+++|++.++. .++++|+ +..
T Consensus 129 l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~-~-~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~ 196 (425)
T 1vp4_A 129 FLDDESYCVLDDPAYLGAIN--------AFRQYLA--NFVVVPLED-D-GMDLNVLERKLSEFDKNGKIKQVKFIYVVSN 196 (425)
T ss_dssp HCCTTCEEEEEESCCHHHHH--------HHHTTTC--EEEEEEEET-T-EECHHHHHHHHHHHHHTTCGGGEEEEEEECS
T ss_pred hCCCCCEEEEeCCCcHHHHH--------HHHHcCC--EEEEeccCC-C-CCCHHHHHHHHHhhhhcccCCCceEEEECCC
Confidence 99999999998876655321 2334565 344555654 3 3899999998865 2678874 555
Q ss_pred CCC--CCCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCC---C--CCcEEEEcCcCcCc-cCcEEEEEEeC
Q 018300 260 SAY--PRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSLR-GPRGGMIFFKK 328 (358)
Q Consensus 260 s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~--gaDiv~~S~hK~L~-Gp~GG~I~~~~ 328 (358)
+++ |...+ +++|.++|+++|+++++|++|+.. ...+..+.++ + +.++++.|++|+++ |.|.|++++++
T Consensus 197 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~ 275 (425)
T 1vp4_A 197 FHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGAL-RYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSK 275 (425)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTC-BCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccc-cCCCCCCcCHHHhCCCCCEEEEeccccccccccceEEEeeCH
Confidence 554 44554 678999999999999999998743 3333211222 1 45688999999985 55679999986
Q ss_pred CCCchhHHHHHHh
Q 018300 329 DPVLGVELESAIN 341 (358)
Q Consensus 329 ~~~~~~~~~~~i~ 341 (358)
++.+++.
T Consensus 276 ------~~~~~l~ 282 (425)
T 1vp4_A 276 ------EFIRKIV 282 (425)
T ss_dssp ------HHHHHHH
T ss_pred ------HHHHHHH
Confidence 4555554
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=145.94 Aligned_cols=167 Identities=16% Similarity=0.170 Sum_probs=117.8
Q ss_pred HHHHHHc-CCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC
Q 018300 155 KRALAAF-NLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (358)
Q Consensus 155 ~~la~lf-g~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~ 233 (358)
+.+++++ +++++ ..+.+++|+.|+..++.++++|||+|++.++.|.++.. .+...|.. ++.+++++
T Consensus 70 ~~la~~~~~~~~~---~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~--~~~v~~~~ 136 (375)
T 3op7_A 70 KSVSQLYTGVKPE---QILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYD--------IPKSLGAE--VDLWQIEE 136 (375)
T ss_dssp HHHHTTSSSCCGG---GEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHH--------HHHHTTCE--EEEEEEEG
T ss_pred HHHHHHhccCChh---hEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHcCCE--EEEEeccc
Confidence 3466776 45543 23555667889999999999999999999876655421 23445654 44444553
Q ss_pred C-CCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CC
Q 018300 234 S-TGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YC 305 (358)
Q Consensus 234 ~-~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--ga 305 (358)
+ +..+|++++++.++. ++++|++..+++ |...| +++|.++|+++|+++++|++|... ...+ .+...+ +.
T Consensus 137 ~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~-~~~~-~~~~~~~~~~ 213 (375)
T 3op7_A 137 ENGWLPDLEKLRQLIRP-TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSF-SELD-VPSIIEVYDK 213 (375)
T ss_dssp GGTTEECHHHHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCC-SSSC-CCCHHHHCTT
T ss_pred cCCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccC-CCchhhhcCC
Confidence 2 346899999999864 789888866554 55778 999999999999999999998743 2221 111112 45
Q ss_pred cEEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 306 DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 306 Div~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
++++.|++|++ +|.++|++++++ ++.+++...
T Consensus 214 ~i~~~s~sK~~~~~G~r~G~v~~~~------~l~~~~~~~ 247 (375)
T 3op7_A 214 GIAVNSLSKTYSLPGIRIGWVAANH------QVTDILRDY 247 (375)
T ss_dssp EEEEEESSSSSSCGGGCCEEEECCH------HHHHHHTTT
T ss_pred EEEEeEChhhcCCcccceEEEEeCH------HHHHHHHHH
Confidence 68899999998 466779999855 677777653
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=160.24 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=116.3
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~ 231 (358)
.++.+++++|.+. .+++++|+ .||.+++.++++|||+|+++.+.|.+... .+...|..+ +.++.
T Consensus 210 ~ee~la~l~G~d~-----~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~--------~~~~~G~~~--v~v~~ 274 (755)
T 2vyc_A 210 SEKYAARVFGADR-----SWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQ--------GLMLTGAKP--VYMVP 274 (755)
T ss_dssp HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHHHHCCEE--EEECC
T ss_pred HHHHHHHHhCCCc-----eEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHH--------HHHHcCCEE--EEEeC
Confidence 5677899999975 25567775 68999999999999999999876544321 234556644 33333
Q ss_pred cCCC----CCC-----CHHHHHHHhhhc-CC--------eEEEEcCCC-CCCCCCHHHHHHHHHHcCCEEEEeccccccc
Q 018300 232 DEST----GLV-----DYDMLEKTAILF-RP--------KLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMAHISGL 292 (358)
Q Consensus 232 ~~~~----~~i-----D~d~le~~i~~~-~~--------klIi~~~s~-~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl 292 (358)
+.++ +.+ |+++|++.+++. ++ +++++..++ +|...|+++|+++|+++|++|++|+||+.++
T Consensus 275 ~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~ 354 (755)
T 2vyc_A 275 SRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_dssp CBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEECTTCTTG
T ss_pred CCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECCCCCceecCHHHHHHHHHHcCCEEEEECcCchhc
Confidence 3221 235 999999988652 23 366665455 5778999999999999999999999998654
Q ss_pred cccCCc--cCCCCC--CcE------EEEcCcCcCccCc-EEEEEEeCC
Q 018300 293 VAASVV--ADPFKY--CDV------VTTTTHKSLRGPR-GGMIFFKKD 329 (358)
Q Consensus 293 ~~~g~~--~~pl~g--aDi------v~~S~hK~L~Gp~-GG~I~~~~~ 329 (358)
...+.. ..++.+ +|+ +++|+||+|+||+ ||+|+.+++
T Consensus 355 ~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~ 402 (755)
T 2vyc_A 355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREG 402 (755)
T ss_dssp GGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECC
T ss_pred ccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCc
Confidence 433221 123335 676 9999999999997 688888765
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=141.59 Aligned_cols=188 Identities=21% Similarity=0.189 Sum_probs=126.2
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCc-CCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--cc
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r-~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~ 190 (358)
.+|.|++++...+.+... +..+.+ .|+..+...+ .++++++++|.+. .|.+++|+.++..++..+ ++
T Consensus 61 ~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~----l~~~la~~~~~~~-----~i~~~sG~~a~~~~~~~l~~~~ 130 (401)
T 2bwn_A 61 QHPVVLAAMHEALEAVGA-GSGGTRNISGTTAYHRR----LEAEIAGLHQKEA-----ALVFSSAYNANDATLSTLRVLF 130 (401)
T ss_dssp GCHHHHHHHHHHHHHHCS-CCCSBTTTBCCBHHHHH----HHHHHHHHTTCSE-----EEEESCHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHcCC-CCCCcCcccCChHHHHH----HHHHHHHHhCCCc-----EEEECCcHHHHHHHHHHHhcCC
Confidence 467899999887754221 111111 2233333333 4566889999743 477799999888887765 36
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh---cCCeEEEEcCCCC--CCC
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIAGASAY--PRD 265 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~---~~~klIi~~~s~~--~~~ 265 (358)
|||+|++.++.|.++.. .+...|..+ +.++.+ |++++++.++. .++++|++..+++ |..
T Consensus 131 ~gd~Vl~~~~~~~~~~~--------~~~~~g~~~--~~v~~~------d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~ 194 (401)
T 2bwn_A 131 PGLIIYSDSLNHASMIE--------GIKRNAGPK--RIFRHN------DVAHLRELIAADDPAAPKLIAFESVYSMDGDF 194 (401)
T ss_dssp TTCEEEEETTCCHHHHH--------HHHHSCCCE--EEECTT------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCB
T ss_pred CCCEEEECchhhHHHHH--------HHHHcCCeE--EEEcCC------CHHHHHHHHHhhccCCceEEEEecCcCCCCCc
Confidence 99999999876655421 223456543 343332 78899888763 3678888866554 668
Q ss_pred CCHHHHHHHHHHcCCEEEEecccccccccc-CC-cc--CCC-CCCcEEEEcCcCcCccCcEEEEEEeC
Q 018300 266 FDYPRMRQIADAVGALLMMDMAHISGLVAA-SV-VA--DPF-KYCDVVTTTTHKSLRGPRGGMIFFKK 328 (358)
Q Consensus 266 ~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~-g~-~~--~pl-~gaDiv~~S~hK~L~Gp~GG~I~~~~ 328 (358)
.|+++|.++|+++|+++++|++|+.|.... +. .. ..+ +..|+++.|++|+|++ .||++++++
T Consensus 195 ~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~-~GG~~~~~~ 261 (401)
T 2bwn_A 195 GPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV-FGGYIAASA 261 (401)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS-CCEEEEECH
T ss_pred CCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccC-CCCEEecCH
Confidence 899999999999999999999999775421 11 00 011 1458999999999865 468888875
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.4e-15 Score=140.68 Aligned_cols=203 Identities=14% Similarity=0.104 Sum_probs=132.6
Q ss_pred cccccccCC--CCcHHHHHHHhhhhhccc--CCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH
Q 018300 104 SLELIASEN--FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP 179 (358)
Q Consensus 104 ~i~lias~n--~~s~~V~~al~~~l~~~~--~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~ 179 (358)
-++|-..++ .+++.|++++...+.+.. ..+|+.. +. .+ .++++++++|++.+ ..+++++|++
T Consensus 28 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~----~~---~~----lr~~la~~~g~~~~---~i~~t~g~~~ 93 (360)
T 3hdo_A 28 WIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSA----SS---QK----LREVAGELYGFDPS---WIIMANGSDE 93 (360)
T ss_dssp SEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCS----SC---HH----HHHHHHHHHTCCGG---GEEEESSHHH
T ss_pred eeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCC----ch---HH----HHHHHHHHhCcCcc---eEEEcCCHHH
Confidence 345544444 458999999988776530 1234431 11 23 35567888998764 2345566778
Q ss_pred HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC
Q 018300 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (358)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~ 259 (358)
|+..++.++++|||+|++.++.|.++.. .+...|. +++.+++++ ++.+ ++++ +..++|+|++..
T Consensus 94 al~~~~~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~-~~~~--~~l~---~~~~~~~v~i~~ 157 (360)
T 3hdo_A 94 VLNNLIRAFAAEGEEIGYVHPSYSYYGT--------LAEVQGA--RVRTFGLTG-DFRI--AGFP---ERYEGKVFFLTT 157 (360)
T ss_dssp HHHHHHHHHCCTTCEEEEESSSCTHHHH--------HHHHHTC--EEEEECBCT-TSSB--TTCC---SSBCSSEEEEES
T ss_pred HHHHHHHHHhCCCCEEEEcCCChHHHHH--------HHHHCCC--EEEEeeCCC-CCCH--HHHH---hhcCCCEEEEeC
Confidence 9999999999999999999886665421 2334465 445555553 2333 3333 223578887765
Q ss_pred CCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcC--ccCcEEEEEEeCCCCch
Q 018300 260 SAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLG 333 (358)
Q Consensus 260 s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~~~ 333 (358)
+++ |...|.++|.++|+++|+++++|++|+. +...+.. ...+ +.+++++|+||++ +|.+.|++++++
T Consensus 158 p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~-~~~~~~~-~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~----- 230 (360)
T 3hdo_A 158 PNAPLGPSFPLEYIDELARRCAGMLVLDETYAE-FAESNAL-ELVRRHENVVVTRTLSKSYSLAGMRIGLAIARP----- 230 (360)
T ss_dssp SCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGG-GSSCCCT-HHHHHCSSEEEEEESTTTTSCTTSCCEEEECCH-----
T ss_pred CCCCCCCCcCHHHHHHHHHHCCCEEEEECChHh-hCCcchh-HHhccCCCEEEEecchHhhcCCccceeeEeeCH-----
Confidence 554 6789999999999999999999999873 2211111 0011 4458899999996 567789999865
Q ss_pred hHHHHHHhhcc
Q 018300 334 VELESAINNAV 344 (358)
Q Consensus 334 ~~~~~~i~~~~ 344 (358)
++.+++....
T Consensus 231 -~~~~~~~~~~ 240 (360)
T 3hdo_A 231 -EVIAALDKIR 240 (360)
T ss_dssp -HHHHHHHHHS
T ss_pred -HHHHHHHHhC
Confidence 6777766543
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.61 E-value=7e-15 Score=145.20 Aligned_cols=174 Identities=12% Similarity=-0.003 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHcCC--CCCCCcceEEeCCCHHHHHHHHHHhccCCC--------------EEEec-CCCCCccccccc
Q 018300 148 ELETLCQKRALAAFNL--DENKWGVNVQPLSGSPANFEVYTAILKPHD--------------RIMGL-DLPHGGHLSHGF 210 (358)
Q Consensus 148 ~lE~~~~~~la~lfg~--~~~~~~v~V~~~SGt~A~~~a~~all~pGD--------------~Vl~~-~~~~ggh~s~~~ 210 (358)
++++.+.+++.+.+|. +++ -.+++++|++|+..++.+++++|| +|+++ ++.|.++.....
T Consensus 87 ~lr~~ia~~l~~~~g~~~~~~---~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~ 163 (444)
T 3if2_A 87 AFIDALVGFFNRHYDWNLTSE---NIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHV 163 (444)
T ss_dssp HHHHHHHHHHHHHHCCCCCGG---GEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCS
T ss_pred HHHHHHHHHHHhhcCCCCCHH---HEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhccc
Confidence 5666666666666664 443 234455666799999999999998 78775 676666543110
Q ss_pred ccchhccccCCceEEEEeceecCCC----CCCCHHHHHHHhh--hcCCeEEEEcCCCC--CCCCC---HHHHHHHHHHcC
Q 018300 211 MTPKRRVSGTSIYFESMPYRLDEST----GLVDYDMLEKTAI--LFRPKLIIAGASAY--PRDFD---YPRMRQIADAVG 279 (358)
Q Consensus 211 ~~~~~~~~~~g~~~~~~~~~~~~~~----~~iD~d~le~~i~--~~~~klIi~~~s~~--~~~~d---l~~I~~ia~e~g 279 (358)
........+ ..+.++++++++ ..+|+++|++.+. ..++++|++..+++ |...+ +++|.++|+++|
T Consensus 164 --~~~~~~~~~--~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~ 239 (444)
T 3if2_A 164 --EGQHFAAVL--PHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYD 239 (444)
T ss_dssp --SSCCEEECC--CEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred --ccchhhccC--ceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCC
Confidence 000112223 345555565422 2689999998732 23678887755554 55677 888999999999
Q ss_pred CEEEEeccccccccccCCcc-CC-CCCCcEEEEcCcCcC-ccCcEEEEEEeC
Q 018300 280 ALLMMDMAHISGLVAASVVA-DP-FKYCDVVTTTTHKSL-RGPRGGMIFFKK 328 (358)
Q Consensus 280 ~~livD~Ah~~Gl~~~g~~~-~p-l~gaDiv~~S~hK~L-~Gp~GG~I~~~~ 328 (358)
++|++|++|+..+....... .+ ..+.+++++|+||++ +|.+.|+++.++
T Consensus 240 ~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~ 291 (444)
T 3if2_A 240 IPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADA 291 (444)
T ss_dssp CCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCH
T ss_pred CEEEEECCCCCcccccccccccccCCCCEEEEechhhccCCCCceEEEEECH
Confidence 99999999874321110001 11 125679999999974 456779998876
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6e-15 Score=145.10 Aligned_cols=230 Identities=17% Similarity=0.158 Sum_probs=140.2
Q ss_pred hcccccccChHH-HHHHHHHHHHh-hhccccccc---C----CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHH
Q 018300 79 VDYSLGEADPEV-CEIITKEKERQ-FKSLELIAS---E----NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDEL 149 (358)
Q Consensus 79 ~~~~l~~~d~~~-~~~i~~e~~~~-~~~i~lias---~----n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~l 149 (358)
+..++...++.. +.+.+...... .+.++|-.+ + .++++.|++++...+......+|+. ..|.. ++
T Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~---~~g~~---~l 97 (420)
T 4f4e_A 24 LFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLP---IDGIA---AY 97 (420)
T ss_dssp TTTTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCC---TTCCH---HH
T ss_pred HhhcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCC---CCCcH---HH
Confidence 346677777764 44444433322 245666544 1 2234899999988776533334443 12332 44
Q ss_pred HHHHHHHHHHHcCC--CCCCCcceEEeCCCHHHHHHH--HHHhccCCCEEEecCCCCCcccccccccchhccccCCceEE
Q 018300 150 ETLCQKRALAAFNL--DENKWGVNVQPLSGSPANFEV--YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE 225 (358)
Q Consensus 150 E~~~~~~la~lfg~--~~~~~~v~V~~~SGt~A~~~a--~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~ 225 (358)
++.+.+++....+. +++.+ ..+++++|++|+..+ +.++++|||+|+++++.|.++.. .+...|..+.
T Consensus 98 r~~ia~~l~~~~~~~~~~~~~-~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~--------~~~~~g~~~~ 168 (420)
T 4f4e_A 98 DASVQKLLLGDDSPLIAAGRV-VTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRA--------LFDMAGFEVV 168 (420)
T ss_dssp HHHHHHHHHCTTCHHHHTTCE-EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH--------HHHHTTCCEE
T ss_pred HHHHHHHhcCCCccccccCce-EEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHH--------HHHHcCCeEE
Confidence 44444433322221 22100 124445667799988 55678999999999886655421 2345565444
Q ss_pred EEecee-cCCCCCCCHHHHHHHhhhc--CCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCC
Q 018300 226 SMPYRL-DESTGLVDYDMLEKTAILF--RPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASV 297 (358)
Q Consensus 226 ~~~~~~-~~~~~~iD~d~le~~i~~~--~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~ 297 (358)
++++ +++++.+|++++++.++.. ++++|++..+++| ...+ +++|+++|+++|+++++|++|. ++..++.
T Consensus 169 --~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~-~~~~~~~ 245 (420)
T 4f4e_A 169 --AYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQ-GFGESIE 245 (420)
T ss_dssp --EEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT-TSSSCTT
T ss_pred --EeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccc-cccCCcc
Confidence 4444 3346789999999998642 4678887766655 3444 6789999999999999999975 5444321
Q ss_pred --ccC--CC---CCCcEEEEcCcCcCc--cCcEEEEEE
Q 018300 298 --VAD--PF---KYCDVVTTTTHKSLR--GPRGGMIFF 326 (358)
Q Consensus 298 --~~~--pl---~gaDiv~~S~hK~L~--Gp~GG~I~~ 326 (358)
.+. .+ ...++++.|++|+++ |.|.|+++.
T Consensus 246 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~ 283 (420)
T 4f4e_A 246 ADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSI 283 (420)
T ss_dssp GGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEE
T ss_pred hhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEE
Confidence 111 01 144688999999974 778898865
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-14 Score=137.76 Aligned_cols=203 Identities=13% Similarity=0.046 Sum_probs=128.3
Q ss_pred cccccccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHH
Q 018300 104 SLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 181 (358)
Q Consensus 104 ~i~lias~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~ 181 (358)
-+++...++. .++.|++++...+.. ..+|+. .|. .+ .++.+++++|++.+ ..+++++|++|+
T Consensus 26 ~idl~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~----~~~---~~----l~~~la~~~~~~~~---~v~~~~g~~~al 89 (364)
T 1lc5_A 26 LLDFSANINPLGMPVSVKRALIDNLDC--IERYPD----ADY---FH----LHQALARHHQVPAS---WILAGNGETESI 89 (364)
T ss_dssp SEECSSCCCTTCCCHHHHHHHHHTGGG--GGSCCC----TTC---HH----HHHHHHHHHTSCGG---GEEEESSHHHHH
T ss_pred eEEeccccCCCCCCHHHHHHHHHHHHH--hhcCCC----CCH---HH----HHHHHHHHHCcCHH---HEEECCCHHHHH
Confidence 4556544443 689999999877643 123432 111 23 34557888898754 124444556799
Q ss_pred HHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCC-HHHHHHHhhhcCCeEEEEcCC
Q 018300 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD-YDMLEKTAILFRPKLIIAGAS 260 (358)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD-~d~le~~i~~~~~klIi~~~s 260 (358)
..++.++ +||+|++.++.|.++.. .+...|.. ++.++.+++++ ++ ++++.+.+. .++++|++..+
T Consensus 90 ~~~~~~~--~gd~vl~~~p~y~~~~~--------~~~~~g~~--~~~v~~~~~~~-~~~l~~~~~~~~-~~~~~v~i~~p 155 (364)
T 1lc5_A 90 FTVASGL--KPRRAMIVTPGFAEYGR--------ALAQSGCE--IRRWSLREADG-WQLTDAILEALT-PDLDCLFLCTP 155 (364)
T ss_dssp HHHHHHH--CCSEEEEEESCCTHHHH--------HHHHTTCE--EEEEECCGGGT-TCCCTTHHHHCC-TTCCEEEEESS
T ss_pred HHHHHHc--CCCeEEEeCCCcHHHHH--------HHHHcCCe--EEEEeCCcccc-cchhHHHHHhcc-CCCCEEEEeCC
Confidence 9998888 78999998876655321 23345654 44444543222 33 455555443 36788776555
Q ss_pred CC--CCCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCC-CC--CCcEEEEcCcCcC--ccCcEEEEE-EeCC
Q 018300 261 AY--PRDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP-FK--YCDVVTTTTHKSL--RGPRGGMIF-FKKD 329 (358)
Q Consensus 261 ~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p-l~--gaDiv~~S~hK~L--~Gp~GG~I~-~~~~ 329 (358)
++ |...+ +++|.++|+++|+++++|++|+.+. ..+..... ++ +.++++.|+||++ +|.+.|+++ .++
T Consensus 156 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~- 233 (364)
T 1lc5_A 156 NNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFI-PHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDD- 233 (364)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGS-TTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCH-
T ss_pred CCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhc-cCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECCH-
Confidence 54 45677 8999999999999999999987432 21211111 12 5689999999998 456779998 665
Q ss_pred CCchhHHHHHHhhc
Q 018300 330 PVLGVELESAINNA 343 (358)
Q Consensus 330 ~~~~~~~~~~i~~~ 343 (358)
++.+++...
T Consensus 234 -----~~~~~l~~~ 242 (364)
T 1lc5_A 234 -----AAMARMRRQ 242 (364)
T ss_dssp -----HHHHHHHHH
T ss_pred -----HHHHHHHHh
Confidence 566666554
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-14 Score=144.25 Aligned_cols=194 Identities=12% Similarity=0.055 Sum_probs=127.1
Q ss_pred CcHHHHHHHhhhhhcc---cCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCC--CCCCcceEEeCCCHHHHHHHHHHh
Q 018300 114 TSRAVMEAVGSCLTNK---YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~---~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~--~~~~~v~V~~~SGt~A~~~a~~al 188 (358)
.|+.++++....+... ...+|+. ..|.. ++++.+.+++.+.+|.. ++ ..+++++|+.|+..++.++
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~---~~G~~---~lr~~ia~~~~~~~g~~~~~~---~i~~t~G~~~al~~~~~~l 177 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSH---SQGIH---GLRDAIASGIASRDGFPANAD---DIFLTDGASPGVHLMMQLL 177 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCC---TTCCH---HHHHHHHHHHHHHHSSCCCGG---GEEEESSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCC---CcChH---HHHHHHHHHHHhhcCCCCCcc---cEEEcCCHHHHHHHHHHHH
Confidence 5666766665555442 1223332 22333 56666777777777743 33 2345556678999999999
Q ss_pred c-cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhhc-----CCeEEEEcCCC
Q 018300 189 L-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF-----RPKLIIAGASA 261 (358)
Q Consensus 189 l-~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~~-----~~klIi~~~s~ 261 (358)
+ ++||+|+++++.|.++.. .+...|. ++++|+++++ ++.+|+++|++.++.. ++|+|++..++
T Consensus 178 ~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~ 247 (500)
T 3tcm_A 178 IRNEKDGILVPIPQYPLYSA--------SIALHGG--ALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPG 247 (500)
T ss_dssp CCSTTEEEEEEESCCTHHHH--------HHHHTTC--EEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSC
T ss_pred cCCCCCEEEEeCCCcHhHHH--------HHHHcCC--EEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCC
Confidence 7 899999999987765432 2345565 4556666654 3489999999988753 57887775556
Q ss_pred CC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCC-------C---C-CCc-EEEEcCcCcC---ccCcE
Q 018300 262 YP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP-------F---K-YCD-VVTTTTHKSL---RGPRG 321 (358)
Q Consensus 262 ~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p-------l---~-gaD-iv~~S~hK~L---~Gp~G 321 (358)
+| ...+ +++|+++|+++|+++++|++|.......+....+ + . ..+ +++.|++|+| +|.|+
T Consensus 248 NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~ 327 (500)
T 3tcm_A 248 NPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRG 327 (500)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCC
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccce
Confidence 54 3444 6777788999999999999987543322211111 1 1 122 6678999998 47888
Q ss_pred EEEEE
Q 018300 322 GMIFF 326 (358)
Q Consensus 322 G~I~~ 326 (358)
|++++
T Consensus 328 G~~~~ 332 (500)
T 3tcm_A 328 GYFEI 332 (500)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99988
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.1e-16 Score=153.64 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=108.9
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCC-HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SG-t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~ 231 (358)
+++++++ +|++. .+++++| |+|+.+++.++++|||+|+++++.|.++.. .+...|..+ ++++.
T Consensus 62 ~~~~la~-~g~~~-----~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~--------~~~~~G~~~--~~v~~ 125 (446)
T 2x3l_A 62 SMKQVEK-HSDYD-----GYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLH--------ALDISQQEG--HFIET 125 (446)
T ss_dssp HHHHHCS-CTTEE-----EEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHH--------HHHHHTCCE--EECEE
T ss_pred HHHHHHh-cCCCc-----eEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHH--------HHHHcCCeE--EEEeC
Confidence 5667888 99873 3455555 579999999999999999999876554321 233456543 44444
Q ss_pred --cCCC---CCCCHHHHHHHhhhcCCeEEEEcCCC-CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-C
Q 018300 232 --DEST---GLVDYDMLEKTAILFRPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-Y 304 (358)
Q Consensus 232 --~~~~---~~iD~d~le~~i~~~~~klIi~~~s~-~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-g 304 (358)
+++. +.+|++++ +. .++++|++..++ +|...|+++|.++|+++|+++++|++|+..+.+.+....... +
T Consensus 126 ~~~~~~~~~~~~d~~~l---~~-~~~~~v~~~~~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g 201 (446)
T 2x3l_A 126 HQSPLTNHYNKVNLSRL---NN-DGHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQ 201 (446)
T ss_dssp EECTTTSSEEEEEC-----------CCEEEEESSCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGT
T ss_pred eeccccCcCCCCCHHHH---cC-CCceEEEEECCCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcC
Confidence 4322 35788877 23 367887775554 577899999999999999999999999863333332112223 7
Q ss_pred CcEEEEcCcCcCccCc-EEEEEEeCCCC
Q 018300 305 CDVVTTTTHKSLRGPR-GGMIFFKKDPV 331 (358)
Q Consensus 305 aDiv~~S~hK~L~Gp~-GG~I~~~~~~~ 331 (358)
+|++++|+||++.|+. +|+++++++.+
T Consensus 202 ~Di~~~S~~K~l~~~~g~g~l~~~~~~i 229 (446)
T 2x3l_A 202 ADYVVQSFHKTLPALTMGSVLYIHKNAP 229 (446)
T ss_dssp CSEEEECHHHHSSSCTTCEEEEEETTCT
T ss_pred CCEEEECCccccccccccEEEEEcCCcC
Confidence 8999999999988774 59999988743
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.4e-14 Score=138.62 Aligned_cols=175 Identities=15% Similarity=0.113 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHcCCCCCC------CcceEEeCCC-HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccC
Q 018300 148 ELETLCQKRALAAFNLDENK------WGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT 220 (358)
Q Consensus 148 ~lE~~~~~~la~lfg~~~~~------~~v~V~~~SG-t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~ 220 (358)
++++.+.+++++.+|.+... . -+|.+++| ++|+..++.++++|||+|++.++.|.++.. .+...
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~ 152 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQ-MDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQ--------SLHPL 152 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTC-EEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHGGG
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCc-CcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH--------HHHHc
Confidence 46666777788888986411 0 14555555 569999999999999999999886655421 23445
Q ss_pred CceEEEEeceecCCCCCCCHHHHHHHhhh-----------cCCeEEEE-cCCCC--CCCCCH---HHHHHHHHHcCCEEE
Q 018300 221 SIYFESMPYRLDESTGLVDYDMLEKTAIL-----------FRPKLIIA-GASAY--PRDFDY---PRMRQIADAVGALLM 283 (358)
Q Consensus 221 g~~~~~~~~~~~~~~~~iD~d~le~~i~~-----------~~~klIi~-~~s~~--~~~~dl---~~I~~ia~e~g~~li 283 (358)
|. +++++++++ + .+|+++|++.++. .++|+|++ ..+++ |...+. ++|.++|+++|++|+
T Consensus 153 g~--~~~~v~~~~-~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li 228 (425)
T 2r2n_A 153 GC--NIINVASDE-S-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLII 228 (425)
T ss_dssp TC--EEEEECEET-T-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred CC--EEEEeCcCC-C-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 65 445555653 2 4899999998862 35788876 34444 456664 489999999999999
Q ss_pred EeccccccccccCCccCC---CC--CCcEEEEcCcCcCc-cCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 284 MDMAHISGLVAASVVADP---FK--YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 284 vD~Ah~~Gl~~~g~~~~p---l~--gaDiv~~S~hK~L~-Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+|++|+ ++.+.+..+.+ ++ +.++++.|++|++. |.|.|++++++ ++.+++..
T Consensus 229 ~De~~~-~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~------~l~~~l~~ 286 (425)
T 2r2n_A 229 EDDPYY-FLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPK------PLIERVIL 286 (425)
T ss_dssp EECTTG-GGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEH------HHHHHHHH
T ss_pred EECCcc-cccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCH------HHHHHHHH
Confidence 999987 34433321112 22 34588999999984 55679999987 45555543
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-14 Score=138.46 Aligned_cols=204 Identities=12% Similarity=0.050 Sum_probs=122.4
Q ss_pred cccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHc--CCCCCCCcceEEeCCCH-
Q 018300 104 SLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF--NLDENKWGVNVQPLSGS- 178 (358)
Q Consensus 104 ~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lf--g~~~~~~~v~V~~~SGt- 178 (358)
-|+|...++ .+++.|++++...+...... .+...|+......++++.+.+++. + +++++ +|++++|+
T Consensus 71 ~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~----~i~~t~G~~ 142 (449)
T 3qgu_A 71 IISLGIGDTTEPLPKYIADAMAKAAAGLATR--EGYSGYGAEQGQGALREAVASTFY--GHAGRAAD----EIFISDGSK 142 (449)
T ss_dssp CEECSSCCCCCCCCHHHHHHHHHHHHGGGGS--CCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGG----GEEEESCHH
T ss_pred EEEeeCCCCCCCCCHHHHHHHHHHHHhhccc--cCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHH----HEEEccCHH
Confidence 455554443 46899999998877642210 010112111112345554333332 2 44443 35555555
Q ss_pred HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCce--------EEEEeceecCC-CCCCCHHHHHHHhhh
Q 018300 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY--------FESMPYRLDES-TGLVDYDMLEKTAIL 249 (358)
Q Consensus 179 ~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~--------~~~~~~~~~~~-~~~iD~d~le~~i~~ 249 (358)
+++..+ .++++|||+|++.++.|.++.. .+...|.. ++++.++++++ ....|++++
T Consensus 143 ~al~~~-~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 207 (449)
T 3qgu_A 143 CDIARI-QMMFGSKPTVAVQDPSYPVYVD--------TSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA------ 207 (449)
T ss_dssp HHHHHH-HHHHCSSSCEEEEESCCTHHHH--------HHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC------
T ss_pred HHHHHH-HHHhCCCCEEEEcCCCChhHHH--------HHHHcCCcccccccccceeEEEecccccCCcCChhHc------
Confidence 577776 8889999999999887766532 12233432 11344445533 234554321
Q ss_pred cCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCC---C---CCcEEEEcCcCcC--
Q 018300 250 FRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K---YCDVVTTTTHKSL-- 316 (358)
Q Consensus 250 ~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~---gaDiv~~S~hK~L-- 316 (358)
.++++|++..+++| ...+ +++|+++|+++|+++++|++|.. +...+..+.++ + +.++++.|++|++
T Consensus 208 ~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 286 (449)
T 3qgu_A 208 KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYAL-YISNPDCPKTIYEIPGADEVAIETCSFSKYAGF 286 (449)
T ss_dssp CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGG-GCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTC
T ss_pred CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHh-hhcCCCCCCCHhhccCCCCcEEEEecchhhcCC
Confidence 46888887666655 3444 78888999999999999999884 34333222122 1 4568999999997
Q ss_pred ccCcEEEEEEeCCCC
Q 018300 317 RGPRGGMIFFKKDPV 331 (358)
Q Consensus 317 ~Gp~GG~I~~~~~~~ 331 (358)
+|.|.|+++++++.+
T Consensus 287 ~G~r~G~~~~~~~~~ 301 (449)
T 3qgu_A 287 TGVRLGWTVVPKALK 301 (449)
T ss_dssp TTCCCEEEECCTTCB
T ss_pred ccceeEEEecCHHHH
Confidence 477889999988644
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=143.21 Aligned_cols=217 Identities=13% Similarity=0.082 Sum_probs=134.0
Q ss_pred hcccccccCC-C--CcHHH--HHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHc-CCCCCCCcceEEeCC
Q 018300 103 KSLELIASEN-F--TSRAV--MEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NLDENKWGVNVQPLS 176 (358)
Q Consensus 103 ~~i~lias~n-~--~s~~V--~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lf-g~~~~~~~v~V~~~S 176 (358)
.-+++-.+++ . .++.+ ++++...+......+|+. ..|. .++++.+.+++.+.+ +++++++...+++++
T Consensus 48 ~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~---~~g~---~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g 121 (430)
T 2x5f_A 48 TTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAP---PQGI---EELRDLWQQKMLRDNPELSIDNMSRPIVTNA 121 (430)
T ss_dssp CSEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCC---TTCC---HHHHHHHHHHHHHHCTTCCGGGBCCCEEESH
T ss_pred CcEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCC---CCCC---HHHHHHHHHHHhccCcccCCCccceEEEcCC
Confidence 4456654444 1 34555 777665543211223433 1122 245554444443332 665532000244555
Q ss_pred CHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhcccc-CCceEEEEeceecCCCCCCCHHHHHHHhhhc--CCe
Q 018300 177 GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSG-TSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPK 253 (358)
Q Consensus 177 Gt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~--~~k 253 (358)
|++|+..++.++++|||+|++.++.|.++.. .+.. .|. +++.++++++++.+|++++++.++.. +++
T Consensus 122 ~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 191 (430)
T 2x5f_A 122 LTHGLSLVGDLFVNQDDTILLPEHNWGNYKL--------VFNTRNGA--NLQTYPIFDKDGHYTTDSLVEALQSYNKDKV 191 (430)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHTTTTCC--EEEEECCBCTTSCBCSHHHHHHHHHCCSSEE
T ss_pred chHHHHHHHHHHhCCCCEEEEcCCcCccHHH--------HHHHhcCC--eEEEEeccCccCCcCHHHHHHHHHhcCCCCE
Confidence 6789999999999999999999887766421 2334 555 44555565433579999999988652 578
Q ss_pred EEEEcCCCCC--CCCC---HHHHHHHHHH-----cCCEEEEeccccccccccCC-ccC---CC---CCC---cEEEEcCc
Q 018300 254 LIIAGASAYP--RDFD---YPRMRQIADA-----VGALLMMDMAHISGLVAASV-VAD---PF---KYC---DVVTTTTH 313 (358)
Q Consensus 254 lIi~~~s~~~--~~~d---l~~I~~ia~e-----~g~~livD~Ah~~Gl~~~g~-~~~---pl---~ga---Div~~S~h 313 (358)
+|++..+++| ...+ +++|.++|++ +|+++++|++|... ...+. .+. .+ .+. ++++.|+|
T Consensus 192 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 270 (430)
T 2x5f_A 192 IMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGL-FYEDVYTQSLFTALTNLHSNAILPIRLDGAT 270 (430)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTC-BCSSSCCSCHHHHHHTTCCTTEEEEEEEEHH
T ss_pred EEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccc-cCCcccchHHHHHHhhccCCcceEEEEEecc
Confidence 8777655654 5666 8899999999 99999999998743 33322 111 12 134 67799999
Q ss_pred CcC--ccCcEEEEEE---eCCCCchhHHHHHHhh
Q 018300 314 KSL--RGPRGGMIFF---KKDPVLGVELESAINN 342 (358)
Q Consensus 314 K~L--~Gp~GG~I~~---~~~~~~~~~~~~~i~~ 342 (358)
|++ +|.|.|++++ ++ ++.+++..
T Consensus 271 K~~~~~G~riG~~~~~~~~~------~~~~~l~~ 298 (430)
T 2x5f_A 271 KEFFAWGFRVGFMTFGTSDQ------TTKEVLEA 298 (430)
T ss_dssp HHTTCGGGCCEEEEEBCCCH------HHHHHHHH
T ss_pred cCCCCCCCCeEEEEEecCCH------HHHHHHHH
Confidence 998 4556799998 55 55555543
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=142.66 Aligned_cols=228 Identities=12% Similarity=0.103 Sum_probs=132.7
Q ss_pred cccccccCh-HHHHHHHHHHHHh---h---hcccccccCC--CCcHHHHHHHhhhhhcccC-CCCCCCcCCCCcHHHHHH
Q 018300 80 DYSLGEADP-EVCEIITKEKERQ---F---KSLELIASEN--FTSRAVMEAVGSCLTNKYS-EGLPGKRYYGGNEYIDEL 149 (358)
Q Consensus 80 ~~~l~~~d~-~~~~~i~~e~~~~---~---~~i~lias~n--~~s~~V~~al~~~l~~~~~-~G~pg~r~~~G~~~~~~l 149 (358)
+.+++.+.+ +.|+.+.+..... . +-|+|...+. ..++.|++++...+..... .++. .| +......++
T Consensus 27 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~y-~~~~g~~~l 103 (432)
T 3ei9_A 27 NSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYS--GY-GAEQGAKPL 103 (432)
T ss_dssp CHHHHHCCSSCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCC--CC-CCTTCCHHH
T ss_pred ChHHHhCCCCccHHHHHHHHHhhhhcCCCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCcc--CC-CCCCCCHHH
Confidence 455666666 3665553332221 1 2355543333 4789999999887653211 1111 12 111112356
Q ss_pred HHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCce-----
Q 018300 150 ETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY----- 223 (358)
Q Consensus 150 E~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~----- 223 (358)
++.+.+++.+.++++++ .|++++|+. ++. ++.++++|||+|++.++.|.++... +...+..
T Consensus 104 ~~~ia~~~~~~~~~~~~----~i~~t~G~~~al~-~l~~l~~~gd~Vl~~~p~y~~~~~~--------~~~~g~~~~~~~ 170 (432)
T 3ei9_A 104 RAAIAKTFYGGLGIGDD----DVFVSDGAKCDIS-RLQVMFGSNVTIAVQDPSYPAYVDS--------SVIMGQTGQFNT 170 (432)
T ss_dssp HHHHHHHHHTTTTCCGG----GEEEESCHHHHHH-HHHHHHCTTCCEEEEESCCTHHHHH--------HHHHTCSCCEET
T ss_pred HHHHHHHHHccCCCCcc----eEEECCChHHHHH-HHHHHcCCCCEEEEeCCCCHHHHHH--------HHHcCCcccccc
Confidence 66555555444566653 355666665 555 4678899999999999877665321 1111210
Q ss_pred -----EEEEeceecCCC-CCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccc
Q 018300 224 -----FESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGL 292 (358)
Q Consensus 224 -----~~~~~~~~~~~~-~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl 292 (358)
.++.++++++++ ...|+++ ..++++|++..+++| ..++ +++|+++|+++|++|++|++|+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~- 243 (432)
T 3ei9_A 171 DVQKYGNIEYMRCTPENGFFPDLST------VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMY- 243 (432)
T ss_dssp TTTEETTCEEEECCGGGTTSCCGGG------CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG-
T ss_pred cccccCceEEeccCcccCCcCChhh------CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhh-
Confidence 123334444322 2445432 236888877666655 4554 677788899999999999999843
Q ss_pred cccCCccCC--CC---CCcEEEEcCcCcC--ccCcEEEEEEeCCC
Q 018300 293 VAASVVADP--FK---YCDVVTTTTHKSL--RGPRGGMIFFKKDP 330 (358)
Q Consensus 293 ~~~g~~~~p--l~---gaDiv~~S~hK~L--~Gp~GG~I~~~~~~ 330 (358)
..++..... +. +.++++.|++|+| +|.|.|+++++++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~ 288 (432)
T 3ei9_A 244 MSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKL 288 (432)
T ss_dssp CCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTC
T ss_pred ccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHH
Confidence 333221111 11 3468999999997 67778999998864
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.1e-14 Score=134.54 Aligned_cols=202 Identities=14% Similarity=0.113 Sum_probs=132.1
Q ss_pred hcccccccCCC--CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHH
Q 018300 103 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (358)
Q Consensus 103 ~~i~lias~n~--~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A 180 (358)
.-+++-..+++ +++.|++++...+... .+||.. +. .+ .++++++++|++++ ..+++++|++|
T Consensus 27 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~----~~---~~----l~~~la~~~~~~~~---~i~~~~g~t~a 90 (361)
T 3ftb_A 27 ELLDYSSNINPLGIPKSFLNNIDEGIKNL--GVYPDV----NY---RR----LNKSIENYLKLKDI---GIVLGNGASEI 90 (361)
T ss_dssp -CEETTCCCCTTCSCHHHHTTHHHHHHGG--GSCCCT----TC---HH----HHHHHHHHHTCCSC---EEEEESSHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHHHh--cCCCCc----cH---HH----HHHHHHHHhCCCcc---eEEEcCCHHHH
Confidence 44566555453 5899999998776542 234331 11 23 45568888998764 12444566779
Q ss_pred HHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCC
Q 018300 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (358)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s 260 (358)
+..++.++ |+|++.++.|.++.. .+...|. +++.+++++ ++.+|++++++.+++ +++|++..+
T Consensus 91 l~~~~~~~----d~vi~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~-~~~~~~~~l~~~l~~--~~~v~i~~p 153 (361)
T 3ftb_A 91 IELSISLF----EKILIIVPSYAEYEI--------NAKKHGV--SVVFSYLDE-NMCIDYEDIISKIDD--VDSVIIGNP 153 (361)
T ss_dssp HHHHHTTC----SEEEEEESCCTHHHH--------HHHHTTC--EEEEEECCT-TSCCCHHHHHHHTTT--CSEEEEETT
T ss_pred HHHHHHHc----CcEEEecCChHHHHH--------HHHHcCC--eEEEeecCc-ccCCCHHHHHHhccC--CCEEEEeCC
Confidence 99998887 999998876655321 2334565 445555653 357888999998875 888887666
Q ss_pred CCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCC---C--CCcEEEEcCcCcC--ccCcEEEEEEeC
Q 018300 261 AYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSL--RGPRGGMIFFKK 328 (358)
Q Consensus 261 ~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~--gaDiv~~S~hK~L--~Gp~GG~I~~~~ 328 (358)
+++ ...+ +++|+++|+++|+++++|++|+.. ... .....+ + ...+++.|+||++ +|.+.|++++.+
T Consensus 154 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~ 231 (361)
T 3ftb_A 154 NNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEF-TGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNN 231 (361)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGG-TCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESC
T ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhh-cCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCC
Confidence 654 4554 677888888999999999998743 322 111111 1 3347789999997 456779988444
Q ss_pred CCCchhHHHHHHhhcc
Q 018300 329 DPVLGVELESAINNAV 344 (358)
Q Consensus 329 ~~~~~~~~~~~i~~~~ 344 (358)
+ ++.+++....
T Consensus 232 ~-----~~~~~~~~~~ 242 (361)
T 3ftb_A 232 K-----EIAAKIKAKQ 242 (361)
T ss_dssp H-----HHHHHHHTTS
T ss_pred H-----HHHHHHHhhC
Confidence 4 6777776543
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.7e-15 Score=148.13 Aligned_cols=190 Identities=8% Similarity=0.021 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccC----CCEEEecCCCCCcccccccccchhcccc
Q 018300 144 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP----HDRIMGLDLPHGGHLSHGFMTPKRRVSG 219 (358)
Q Consensus 144 ~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~p----GD~Vl~~~~~~ggh~s~~~~~~~~~~~~ 219 (358)
+..-.+|+....++.+++|.+... ..++++++|.+++++..+..++ ||.|+++.. .|.|. .+++.+
T Consensus 94 ~~~~~~e~~~~~~~~~~lGlp~~~--~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~---aHkSv-----~kAl~l 163 (450)
T 3bc8_A 94 SLLNKITNSLVLNVIKLAGVHSVA--SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRI---DQKSC-----FKSMVT 163 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCC--EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECC---CCHHH-----HHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCc--eEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECC---cHHHH-----HHHHHH
Confidence 335578888888999999998642 2244555554444444444443 899988754 55442 145677
Q ss_pred CCceEEEEeceecCCCCCCCHHHHHHHhhhcC---CeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccccccc
Q 018300 220 TSIYFESMPYRLDESTGLVDYDMLEKTAILFR---PKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVA 294 (358)
Q Consensus 220 ~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~---~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~ 294 (358)
.|.....++...+++.+.+|+++|++.+++++ +-+|++.+++++ ...|+++|+++|++||+++++|+||...+..
T Consensus 164 ~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~ 243 (450)
T 3bc8_A 164 AGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSK 243 (450)
T ss_dssp TTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHH
T ss_pred cCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhh
Confidence 88765555433333466899999999997643 234555666676 5789999999999999999999999854332
Q ss_pred cCCcc-CCC--CCCcEEEEcCcCcCccCcE-EEEEEeCCCCchhHHHHHHhhccCCccc
Q 018300 295 ASVVA-DPF--KYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQ 349 (358)
Q Consensus 295 ~g~~~-~pl--~gaDiv~~S~hK~L~Gp~G-G~I~~~~~~~~~~~~~~~i~~~~f~g~q 349 (358)
...++ ..+ +++|+++.|+|||+..|-+ ++++.+++ ++.+++.. .+++.|
T Consensus 244 ~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~-----~~~~~~~~-~~~g~~ 296 (450)
T 3bc8_A 244 CMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNE-----PFIQDISK-MYPGRA 296 (450)
T ss_dssp HHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCH-----HHHHHHHH-HSCSCB
T ss_pred hHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCH-----HHHHHHHH-HhhcCC
Confidence 11111 223 4799999999999999965 56666654 55555543 344433
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=142.95 Aligned_cols=226 Identities=13% Similarity=0.043 Sum_probs=132.7
Q ss_pred cchhcccccccChHHHHHHHHHHHHhhhcccccccCCC-----CcHHHHHHHhhhhh--cc-cCCCCCCCcCCCCcHHHH
Q 018300 76 SSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENF-----TSRAVMEAVGSCLT--NK-YSEGLPGKRYYGGNEYID 147 (358)
Q Consensus 76 ~~~~~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~-----~s~~V~~al~~~l~--~~-~~~G~pg~r~~~G~~~~~ 147 (358)
.....+++......++....+.+. +...++|-.+++. +++.+++++...+. .. ...+|+. ..|.+
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~l~~-~~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~---~~G~~--- 79 (422)
T 3d6k_A 7 KDYDAARLAQVREEVTAKYAELKA-KNLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGG---LLGIA--- 79 (422)
T ss_dssp -----------CHHHHHHHHHHHH-TTCCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCC---SSCCH---
T ss_pred cCCCHHHHHhhHHHHHHHHHHHhc-cCCeEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCC---CCCCH---
Confidence 344566777788888887665444 2345666555552 34467776654321 11 1223433 12222
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HHH--HHHHHHhccC------------CCEEEecCCCCCccccccccc
Q 018300 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGS-PAN--FEVYTAILKP------------HDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 148 ~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A~--~~a~~all~p------------GD~Vl~~~~~~ggh~s~~~~~ 212 (358)
++ ++.++++++++++ +|.+++|+ +++ ..++.++.++ ||+|++.++.|.++..
T Consensus 80 ~l----r~~ia~~~~~~~~----~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~----- 146 (422)
T 3d6k_A 80 DI----RELWAEALGLPAD----LVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFT----- 146 (422)
T ss_dssp HH----HHHHHHHHTCCGG----GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH-----
T ss_pred HH----HHHHHHHhCCChh----HEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHH-----
Confidence 33 4457788898864 35566665 476 5566667666 4579998886655421
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEE-EcCCCC--CCCCCHH---HHHHHHH-HcCCEEEEe
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII-AGASAY--PRDFDYP---RMRQIAD-AVGALLMMD 285 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi-~~~s~~--~~~~dl~---~I~~ia~-e~g~~livD 285 (358)
.+...|. +++++++++ ++ +|++++++.++..++|+|+ +..+++ |...+.+ +|.++|+ ++|+++++|
T Consensus 147 ---~~~~~g~--~~~~v~~~~-~g-~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~D 219 (422)
T 3d6k_A 147 ---ITEHFGF--EMINVPMTD-EG-PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWD 219 (422)
T ss_dssp ---HHHHHTC--EEEEEEEET-TE-ECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEE
T ss_pred ---HHHHcCC--EEEecCCCC-CC-CCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEE
Confidence 2334465 445555664 33 9999999988654688887 444455 4567765 7777777 899999999
Q ss_pred ccccc-cccccCCccCCC-------C--CCcEEEEcCcCc-CccCcEEEEEEeC
Q 018300 286 MAHIS-GLVAASVVADPF-------K--YCDVVTTTTHKS-LRGPRGGMIFFKK 328 (358)
Q Consensus 286 ~Ah~~-Gl~~~g~~~~pl-------~--gaDiv~~S~hK~-L~Gp~GG~I~~~~ 328 (358)
++|+. ++...+....++ + +.++++.|++|+ ++|.|.|++++++
T Consensus 220 e~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~ 273 (422)
T 3d6k_A 220 NAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSK 273 (422)
T ss_dssp CTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECCH
T ss_pred CCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeCH
Confidence 99973 443322111122 2 456889999996 4667889999886
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.5e-14 Score=134.81 Aligned_cols=166 Identities=13% Similarity=0.058 Sum_probs=114.2
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCC-HHHHHHHHHHhccCC-CEEEecCCCCCcccccccccchhccccCCceEEEEece
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SG-t~A~~~a~~all~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~ 230 (358)
.++.+++++|++++ +|.+++| ++|+..++.++++|| |+|+++++.|.++.. .+...|. +++.++
T Consensus 63 lr~~la~~~~~~~~----~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~ 128 (356)
T 1fg7_A 63 VIENYAQYAGVKPE----QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSV--------SAETIGV--ECRTVP 128 (356)
T ss_dssp HHHHHHHHHTSCGG----GEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHH--------HHHHHTC--EEEECC
T ss_pred HHHHHHHHhCCChH----HEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEee
Confidence 45567888898764 3555555 679999999999999 999999887665431 2234455 445555
Q ss_pred ecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCCHHHHH---HHHHHcCCEEEEeccccccccccCCccCCCC--
Q 018300 231 LDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMR---QIADAVGALLMMDMAHISGLVAASVVADPFK-- 303 (358)
Q Consensus 231 ~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~dl~~I~---~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-- 303 (358)
++ +++.+|++++++.++ ++|+|++..+++ |...+.+++. ++|+ +|+++++|++|.... ........++
T Consensus 129 ~~-~~~~~d~~~l~~~i~--~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~-~~~~~~~~~~~~ 203 (356)
T 1fg7_A 129 TL-DNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFC-PQASLAGWLAEY 203 (356)
T ss_dssp CC-TTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGS-GGGCSGGGTTTC
T ss_pred CC-CCCCCCHHHHHHHhc--CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhc-CCCcHHHHHhhC
Confidence 65 345789999998875 788888876665 4566755554 5555 899999999987432 1111111112
Q ss_pred CCcEEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 304 YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 304 gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
+.++++.|+||++ +|.|.|++++++ ++.+++...
T Consensus 204 ~~~i~~~s~sK~~g~~G~r~G~~~~~~------~~~~~l~~~ 239 (356)
T 1fg7_A 204 PHLAILRTLSKAFALAGLRCGFTLANE------EVINLLMKV 239 (356)
T ss_dssp TTEEEEEESSSTTCCGGGCCEEEEECH------HHHHHHHHH
T ss_pred CCEEEEecchHhhcCchhhhEEEEeCH------HHHHHHHHh
Confidence 4578899999997 567779999966 566666553
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-14 Score=138.00 Aligned_cols=225 Identities=15% Similarity=0.174 Sum_probs=133.0
Q ss_pred ccccChH-HHHHHHHHHHHhh-hcccccccC---C----CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHH
Q 018300 83 LGEADPE-VCEIITKEKERQF-KSLELIASE---N----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 153 (358)
Q Consensus 83 l~~~d~~-~~~~i~~e~~~~~-~~i~lias~---n----~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~ 153 (358)
+...++. ++.+.++.+.... .-++|-.+. . .+.+.|.+++.....+....+|+. ..|.+ ++++.+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~---~~g~~---~lr~~i 80 (401)
T 7aat_A 7 VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLP---IAGLA---DFTRAS 80 (401)
T ss_dssp CCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCC---TTCCH---HHHHHH
T ss_pred CCCCCCChhHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCC---CCCCH---HHHHHH
Confidence 4444444 4554444333322 335554322 1 234578888876654333334443 12333 455544
Q ss_pred HHHHHHHcCC--CCCCCcce-EEeCCCHHHHHHHHHHh---ccCCCEEEecCCCCCcccccccccchhccccCCceEEEE
Q 018300 154 QKRALAAFNL--DENKWGVN-VQPLSGSPANFEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM 227 (358)
Q Consensus 154 ~~~la~lfg~--~~~~~~v~-V~~~SGt~A~~~a~~al---l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~ 227 (358)
.+++.+.+|. ++++ +. +++.+|++|+..++.++ ++|||+|++.++.|.++.. .+...|..+ +
T Consensus 81 a~~~~~~~~~~~~~~~--i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~--------~~~~~g~~~--~ 148 (401)
T 7aat_A 81 AELALGENSEAFKSGR--YVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTP--------IFRDAGLQL--Q 148 (401)
T ss_dssp HHHHHCTTCHHHHTTC--EEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHH--------HHHHTTCEE--E
T ss_pred HHHhcCCCccccccCc--eEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHH--------HHHHcCCee--E
Confidence 4444433342 1332 11 12456778999887665 4999999999887766532 234556644 4
Q ss_pred eceec-CCCCCCCHHHHHHHhhh--cCCeEEEEcCCCCCC--CC---CHHHHHHHHHHcCCEEEEeccccccccccCCc-
Q 018300 228 PYRLD-ESTGLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV- 298 (358)
Q Consensus 228 ~~~~~-~~~~~iD~d~le~~i~~--~~~klIi~~~s~~~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~- 298 (358)
.++++ ++++.+|++++++.++. .++++|++..++||+ .. ++++|.++|+++|+++++|++|. ++...+..
T Consensus 149 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~-~~~~~~~~~ 227 (401)
T 7aat_A 149 AYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQ-GFASGDINR 227 (401)
T ss_dssp EEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTTTSCHHH
T ss_pred eeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccc-cccCCCccc
Confidence 44443 23578999988877654 256788887777654 33 47889999999999999999976 33322210
Q ss_pred -cCCC----C--CCcEEEEcCcCcC--ccCcEEEEEE
Q 018300 299 -ADPF----K--YCDVVTTTTHKSL--RGPRGGMIFF 326 (358)
Q Consensus 299 -~~pl----~--gaDiv~~S~hK~L--~Gp~GG~I~~ 326 (358)
..++ + .-.+++.|+||++ +|.|.|+++.
T Consensus 228 ~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~ 264 (401)
T 7aat_A 228 DAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTV 264 (401)
T ss_dssp HTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEE
T ss_pred cHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEE
Confidence 0001 1 3457899999997 5777788886
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=140.70 Aligned_cols=193 Identities=15% Similarity=0.136 Sum_probs=117.0
Q ss_pred CCcHHHHHHHhh-hhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceEE--eCCCHHHHHHHH--
Q 018300 113 FTSRAVMEAVGS-CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQ--PLSGSPANFEVY-- 185 (358)
Q Consensus 113 ~~s~~V~~al~~-~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg--~~~~~~~v~V~--~~SGt~A~~~a~-- 185 (358)
++++.|.+++.. .+......+|.. ..|. .++++.+.+++...+| +++++ .++ +.+|+.|+..++
T Consensus 47 ~~~~~v~~a~~~~~~~~~~~~~y~~---~~g~---~~lr~~ia~~~~~~~~~~~~~~~---i~~~~t~g~~~a~~~~~~~ 117 (412)
T 1yaa_A 47 WVLPSVKAAEKLIHNDSSYNHEYLG---ITGL---PSLTSNAAKIIFGTQSDALQEDR---VISVQSLSGTGALHISAKF 117 (412)
T ss_dssp CCCHHHHHHHHHHHTCTTCCCCCCC---TTCC---HHHHHHHHHHHHCTTCHHHHTTC---EEEEEEEHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhhcCcccccCCCC---CCCc---HHHHHHHHHHHhcCCCCCCCcce---EEEEeccchHhHHHHHHHH
Confidence 578999999987 664222223321 1222 2455544444433233 13321 233 556778988873
Q ss_pred HHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee-cCCCCCCCHHHHHHHhhhcC--CeEEEEcCCCC
Q 018300 186 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAILFR--PKLIIAGASAY 262 (358)
Q Consensus 186 ~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~iD~d~le~~i~~~~--~klIi~~~s~~ 262 (358)
..+++|||+|++.++.|.++.. .+...|..+ +.++. +++++.+|++++++.++..+ ..++++..+++
T Consensus 118 ~~~~~~gd~Vl~~~p~~~~~~~--------~~~~~g~~~--~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~n 187 (412)
T 1yaa_A 118 FSKFFPDKLVYLSKPTWANHMA--------IFENQGLKT--ATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHN 187 (412)
T ss_dssp HHHHCTTCCEEEEESCCTTHHH--------HHHTTTCCE--EEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCT
T ss_pred HHHhCCCCEEEEeCCCCccHHH--------HHHHcCceE--EEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 4556899999999887665422 233456544 44445 43456799999999887542 33445466665
Q ss_pred C--CCCC---HHHHHHHHHHcCCEEEEeccccccccccC---C-cc-CCCC--C----CcEEEEcCcCcCc--cCcEEEE
Q 018300 263 P--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAAS---V-VA-DPFK--Y----CDVVTTTTHKSLR--GPRGGMI 324 (358)
Q Consensus 263 ~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g---~-~~-~pl~--g----aDiv~~S~hK~L~--Gp~GG~I 324 (358)
| ...+ +++|.++|+++|+++++|++|. ++..++ . .+ ..+. + -++++.|+||+++ |.|.|++
T Consensus 188 PtG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~ 266 (412)
T 1yaa_A 188 PTGLDPTSEQWVQIVDAIASKNHIALFDTAYQ-GFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCF 266 (412)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEecccc-cccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEE
Confidence 4 4544 6788999999999999999985 333222 1 01 0111 3 3577899999874 5566988
Q ss_pred E
Q 018300 325 F 325 (358)
Q Consensus 325 ~ 325 (358)
+
T Consensus 267 ~ 267 (412)
T 1yaa_A 267 H 267 (412)
T ss_dssp E
T ss_pred E
Confidence 8
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.6e-15 Score=146.51 Aligned_cols=186 Identities=13% Similarity=0.067 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccC----CCEEEecCCCCCcccccccccchhccccCCce
Q 018300 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP----HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY 223 (358)
Q Consensus 148 ~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~p----GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~ 223 (358)
.-|.++-+|++.+ |..... ..+.++.+|.++++++++.+++ ||+|+++. +.|.|. .+.+.+.|..
T Consensus 117 ltn~l~ld~L~~~-G~~~~~--~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpR---n~HKSv-----~kAliL~Gl~ 185 (501)
T 3hl2_A 117 ITNSLVLDIIKLA-GVHTVA--NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPR---IDQKSC-----FKSMITAGFE 185 (501)
T ss_dssp HHHHHHHHHHHHT-TCTTCC--EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEEC---CCCHHH-----HHHHHHTTCE
T ss_pred HHHHHHHHHHHHc-CCCCCC--cEEEECcHHHHHHHHHHHHcCcccCCCCEEEEec---chHHHH-----HHHHHHcCCe
Confidence 3455677777766 998631 2344444555777777777664 49999976 456553 1456778876
Q ss_pred EEEEeceecCCCCCCCHHHHHHHhhhcCC--eEE-EEcCCCC-CC-CCCHHHHHHHHHHcCCEEEEeccccccccccCCc
Q 018300 224 FESMPYRLDESTGLVDYDMLEKTAILFRP--KLI-IAGASAY-PR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 298 (358)
Q Consensus 224 ~~~~~~~~~~~~~~iD~d~le~~i~~~~~--klI-i~~~s~~-~~-~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~ 298 (358)
..+++..++++...+|++++++.++++.+ .++ +...+.| |. ..|+++|+++|++||+++++|+||...+.....+
T Consensus 186 Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~l 265 (501)
T 3hl2_A 186 PVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHL 265 (501)
T ss_dssp EEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHH
T ss_pred EEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhh
Confidence 55555445544568999999999987533 233 3344555 43 4799999999999999999999998655332212
Q ss_pred c-CCCC-C-CcEEEEcCcCcCccCcEE-EEEEeCCCCchhHHHHHHhhccCCcccc
Q 018300 299 A-DPFK-Y-CDVVTTTTHKSLRGPRGG-MIFFKKDPVLGVELESAINNAVFPGLQV 350 (358)
Q Consensus 299 ~-~pl~-g-aDiv~~S~hK~L~Gp~GG-~I~~~~~~~~~~~~~~~i~~~~f~g~q~ 350 (358)
| ..++ | +|+++.|+||++..|-|| +++++++ ++.+++.. .+||-+.
T Consensus 266 p~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~-----e~l~~~~~-~yPGr~S 315 (501)
T 3hl2_A 266 IQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFND-----SFIQEISK-MYPGRAS 315 (501)
T ss_dssp HHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCH-----HHHHHHHH-TSCSCBC
T ss_pred HHHHHhcCCCcEEEecccccceeecCceEEEeCCH-----HHHHHHHH-hCCCCCC
Confidence 2 2234 6 999999999999888665 5556665 66666643 5666653
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=137.36 Aligned_cols=224 Identities=17% Similarity=0.204 Sum_probs=133.0
Q ss_pred ccccccChH-HHHHHHHHHHHhh-hcccccc-------cCCCCcHHHHHHHhhhh--hcccCCCCCCCcCCCCcHHHHHH
Q 018300 81 YSLGEADPE-VCEIITKEKERQF-KSLELIA-------SENFTSRAVMEAVGSCL--TNKYSEGLPGKRYYGGNEYIDEL 149 (358)
Q Consensus 81 ~~l~~~d~~-~~~~i~~e~~~~~-~~i~lia-------s~n~~s~~V~~al~~~l--~~~~~~G~pg~r~~~G~~~~~~l 149 (358)
.++...++. ++.+.++-+...+ ..++|-. +..++.+.|.+++.... ......+|+. ..|.+ ++
T Consensus 26 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~---~~G~~---~l 99 (448)
T 3meb_A 26 SGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPP---VAGFP---LF 99 (448)
T ss_dssp TTCCCCCCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCC---TTCCH---HH
T ss_pred hcCCCCCCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCC---CcchH---HH
Confidence 455665554 5666555443333 2355532 22345678888865443 1122223332 22332 34
Q ss_pred HHHHHHHHHHHc-CCC-----CCCCcceEEeCCCHHHHHH--HHHHhccCCCEEEecCCCCCcccccccccchhccc---
Q 018300 150 ETLCQKRALAAF-NLD-----ENKWGVNVQPLSGSPANFE--VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS--- 218 (358)
Q Consensus 150 E~~~~~~la~lf-g~~-----~~~~~v~V~~~SGt~A~~~--a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~--- 218 (358)
++. +++++ |.+ ++++ +.+++.+|+.|+.. .+.++++|||+|+++++.|.+|.. .+.
T Consensus 100 r~~----ia~~l~g~~~~~~~~~~i-~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~--------~~~~~~ 166 (448)
T 3meb_A 100 LEA----AQFLMFGKDSKAAQEGRI-ASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYG--------IYDKVF 166 (448)
T ss_dssp HHH----HHHHHHCTTCHHHHTTCE-EEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHH--------HHHHHH
T ss_pred HHH----HHHHhcCCCccccCcCcE-EEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHH--------HHHhhH
Confidence 443 44444 876 3321 11126677889877 556778999999999987766532 233
Q ss_pred -cCCceEEEEecee-cCC-CCCCCHHHHHHHhhhc--CCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccc
Q 018300 219 -GTSIYFESMPYRL-DES-TGLVDYDMLEKTAILF--RPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAH 288 (358)
Q Consensus 219 -~~g~~~~~~~~~~-~~~-~~~iD~d~le~~i~~~--~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah 288 (358)
..|.. ++++++ +++ ++.+|++++++.++.. +++++++..+++| ...+ +++|+++|+++|+++++|++|
T Consensus 167 ~~~G~~--v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay 244 (448)
T 3meb_A 167 NKLKVP--YKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAY 244 (448)
T ss_dssp CTTTSC--CEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred HhCCCe--EEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEeccc
Confidence 45653 444555 444 5789999999988752 4567777666665 3455 666999999999999999997
Q ss_pred cccccccCC----cc-CCC-C-CCc-EEEEcCcCcC--ccCcEEEE--EE
Q 018300 289 ISGLVAASV----VA-DPF-K-YCD-VVTTTTHKSL--RGPRGGMI--FF 326 (358)
Q Consensus 289 ~~Gl~~~g~----~~-~pl-~-gaD-iv~~S~hK~L--~Gp~GG~I--~~ 326 (358)
. ++...+. .. ..+ + +.+ +++.|+||++ .|.|-|++ ++
T Consensus 245 ~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~ 293 (448)
T 3meb_A 245 Q-GFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVH 293 (448)
T ss_dssp T-TTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEEC
T ss_pred c-cccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeee
Confidence 6 3333221 00 011 1 333 7789999987 46676887 55
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.8e-14 Score=135.59 Aligned_cols=196 Identities=18% Similarity=0.147 Sum_probs=118.9
Q ss_pred CcHHHHHHHhh-hhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceEEeCCCHHHHHHHH--HHh
Q 018300 114 TSRAVMEAVGS-CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGSPANFEVY--TAI 188 (358)
Q Consensus 114 ~s~~V~~al~~-~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~--~~~~~~v~V~~~SGt~A~~~a~--~al 188 (358)
+++.|++++.. .+.+....+|+. ..|.+ ++++.+.+++....+. +++.+ ..+++++|++|+..++ .++
T Consensus 45 ~~~~v~~a~~~~~~~~~~~~~y~~---~~g~~---~lr~~la~~~~~~~~~~~~~~~~-~i~~t~g~~~a~~~~~~~~~~ 117 (397)
T 3fsl_A 45 QLQAVAEAEARLNAQPHGASLYLP---MEGLN---CYRHAIAPLLFGADHPVLKQQRV-ATIQTLGGSGALKVGADFLKR 117 (397)
T ss_dssp CCHHHHHHHHHHHHSCCCCCCCCC---TTCCH---HHHHHHHHHHHCTTCHHHHTTCE-EEEEESHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhccCccccccCCC---CCchH---HHHHHHHHHHhcCCcccccccce-EEEEcCCcHHHHHHHHHHHHh
Confidence 34899999988 665433334443 12332 3444433333322221 22100 0244455667998884 566
Q ss_pred ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc--CCeEEEEcCCCCC--C
Q 018300 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYP--R 264 (358)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~--~~klIi~~~s~~~--~ 264 (358)
++|||+|++.++.|.++.. .+...|..+..+++. +++++.+|++++++.++.. +++++++..+++| .
T Consensus 118 ~~~gd~vl~~~p~~~~~~~--------~~~~~g~~~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~ 188 (397)
T 3fsl_A 118 YFPESGVWVSDPTWENHVA--------IFAGAGFEVSTYPWY-DEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGA 188 (397)
T ss_dssp HCTTCCEEEESSCCHHHHH--------HHHHTTCCEEEECCE-ETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCC
T ss_pred cCCCCeEEEeCCCchhHHH--------HHHHcCCceEEEeee-eccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCc
Confidence 8999999999876655421 234456544444431 2245789999999998742 4567777655554 4
Q ss_pred CCC---HHHHHHHHHHcCCEEEEeccccccccccC--CccC--CC-C--CCcEEEEcCcCcC--ccCcEEEEEE
Q 018300 265 DFD---YPRMRQIADAVGALLMMDMAHISGLVAAS--VVAD--PF-K--YCDVVTTTTHKSL--RGPRGGMIFF 326 (358)
Q Consensus 265 ~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g--~~~~--pl-~--gaDiv~~S~hK~L--~Gp~GG~I~~ 326 (358)
..+ +++|+++|+++|+++++|++|. ++...+ ..+. .+ + ...+++.|++|++ +|.|.|+++.
T Consensus 189 ~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~ 261 (397)
T 3fsl_A 189 DLTNDQWDAVIEILKARELIPFLDIAYQ-GFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSV 261 (397)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEESCT-TSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCEEEEEecCch-hhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEE
Confidence 544 6689999999999999999986 333221 0110 11 1 3458889999997 4677798876
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.6e-14 Score=141.28 Aligned_cols=195 Identities=13% Similarity=0.039 Sum_probs=123.6
Q ss_pred CCCcHHHHHHHhhhhhccc---CCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC-C--CCCCCcceEEeCC-CHHHHHHH
Q 018300 112 NFTSRAVMEAVGSCLTNKY---SEGLPGKRYYGGNEYIDELETLCQKRALAAFN-L--DENKWGVNVQPLS-GSPANFEV 184 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~---~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg-~--~~~~~~v~V~~~S-Gt~A~~~a 184 (358)
+..|..+.+++...+.... ..+|+. ..|.. ++++.+.+++.+.+| . +++ +|++++ +++|+..+
T Consensus 100 ~~~P~~~~~~~~~~l~~~~~~~~~~Y~~---~~G~~---~lr~~ia~~~~~~~gG~~~~~~----~i~~t~G~~~ai~~~ 169 (498)
T 3ihj_A 100 PSFPEDAKKRARRILQACGGNSLGSYSA---SQGVN---CIREDVAAYITRRDGGVPADPD----NIYLTTGASDGISTI 169 (498)
T ss_dssp SSSCHHHHHHHHHHHHHC-------------CCSCH---HHHHHHHHHHHHHTTTCCCCGG----GEEEESSHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhccCCCCCCCCC---CCCHH---HHHHHHHHHHHHhcCCCCCCcc----cEEEcCCHHHHHHHH
Confidence 3345566666655554421 123433 22433 566666777777775 4 333 344454 55699999
Q ss_pred HHHhccCCC----EEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhhc----CCeEE
Q 018300 185 YTAILKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF----RPKLI 255 (358)
Q Consensus 185 ~~all~pGD----~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~~----~~klI 255 (358)
+.+++++|| +|+++++.|.++.. .+...|. ++++|+++++ +..+|+++|++.++.. ++|+|
T Consensus 170 ~~~l~~~gd~~~d~Vlv~~p~y~~~~~--------~~~~~g~--~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i 239 (498)
T 3ihj_A 170 LKILVSGGGKSRTGVMIPIPQYPLYSA--------VISELDA--IQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVL 239 (498)
T ss_dssp HHHHCCCCGGGSEEEEEEESCCTHHHH--------HHHHTTC--EEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEE
T ss_pred HHHHcCCCCCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEE
Confidence 999999876 99999887765421 2345565 4556666654 3489999999998754 47888
Q ss_pred EEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC------C------C-cEEEEcCcCcC-
Q 018300 256 IAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK------Y------C-DVVTTTTHKSL- 316 (358)
Q Consensus 256 i~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~------g------a-Div~~S~hK~L- 316 (358)
++..+++| ...+ +++|+++|+++|++|++|++|.......+....++. + . -+++.|++|++
T Consensus 240 ~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 319 (498)
T 3ihj_A 240 CIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYM 319 (498)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTT
T ss_pred EEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccc
Confidence 77666655 3444 677999999999999999998744332221111221 1 1 15678999998
Q ss_pred --ccCcEEEEEE
Q 018300 317 --RGPRGGMIFF 326 (358)
Q Consensus 317 --~Gp~GG~I~~ 326 (358)
+|.|+|+++.
T Consensus 320 G~~G~R~G~~~~ 331 (498)
T 3ihj_A 320 GECGYRGGYMEV 331 (498)
T ss_dssp CCSSSCCEEEEE
T ss_pred cCcccceEEEEE
Confidence 4888999984
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.6e-14 Score=137.85 Aligned_cols=222 Identities=14% Similarity=0.051 Sum_probs=139.0
Q ss_pred ccccccChHHHHHHHHHHHHhhhcccccccCCC-----CcHHHHHHHh--hhhhcc-cCCCCCCCcCCCCcHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQFKSLELIASENF-----TSRAVMEAVG--SCLTNK-YSEGLPGKRYYGGNEYIDELETL 152 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~-----~s~~V~~al~--~~l~~~-~~~G~pg~r~~~G~~~~~~lE~~ 152 (358)
.+++++.+.++..+.+...+ ...++|-.+... +++.+++++. ..+.+. ...+||+. ..|.+ +
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~--~~g~~---~---- 74 (423)
T 3ez1_A 5 EASRPALDLARQAYEAFKAR-GLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGG--VAGLP---S---- 74 (423)
T ss_dssp -CCHHHHHHHHHHHHHHHHH-TCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSC--TTCCH---H----
T ss_pred HHHHHHHHHHHHHHHHhhcC-CceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCC--CCChH---H----
Confidence 35667778888777664443 345666533332 4557888775 333211 11234221 12222 3
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCC-HHHHH--HHHHHhcc--C---------CCEEEecCCCCCcccccccccchhccc
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSG-SPANF--EVYTAILK--P---------HDRIMGLDLPHGGHLSHGFMTPKRRVS 218 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SG-t~A~~--~a~~all~--p---------GD~Vl~~~~~~ggh~s~~~~~~~~~~~ 218 (358)
.++.++++++++++ +|++++| ++|+. .++.++++ | ||+|++.++.|.++.. .+.
T Consensus 75 lr~~ia~~~~~~~~----~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~ 142 (423)
T 3ez1_A 75 ARALFAGYLDVKAE----NVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFL--------LLQ 142 (423)
T ss_dssp HHHHHHHHTTSCGG----GEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHH--------HHH
T ss_pred HHHHHHHHhCCChh----hEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHH--------HHH
Confidence 34557888998874 3555555 55887 78888877 8 5999998876655421 233
Q ss_pred cCCceEEEEeceecCCCCCCCHHHHHHHhh-hcCCeEEEEc-CCCC--CCCCCHH---HHHHHH-HHcCCEEEEeccccc
Q 018300 219 GTSIYFESMPYRLDESTGLVDYDMLEKTAI-LFRPKLIIAG-ASAY--PRDFDYP---RMRQIA-DAVGALLMMDMAHIS 290 (358)
Q Consensus 219 ~~g~~~~~~~~~~~~~~~~iD~d~le~~i~-~~~~klIi~~-~s~~--~~~~dl~---~I~~ia-~e~g~~livD~Ah~~ 290 (358)
..|. ++++++++++ .+|+++|++.++ ..++++|++. .+++ |...+.+ +|.++| +++|+++++|++|..
T Consensus 143 ~~g~--~~~~v~~~~~--g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~ 218 (423)
T 3ez1_A 143 TLGF--ELLTVDMQSD--GPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRV 218 (423)
T ss_dssp HHTC--EEEEEEEETT--EECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSS
T ss_pred HcCC--EEEeccCCCC--CCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcch
Confidence 4565 4455556643 499999999885 3468888764 3444 4566665 888888 899999999999874
Q ss_pred ccccc-CCc-c-CCC------C--CCcEEEEcCcCc-CccCcEEEEEEeC
Q 018300 291 GLVAA-SVV-A-DPF------K--YCDVVTTTTHKS-LRGPRGGMIFFKK 328 (358)
Q Consensus 291 Gl~~~-g~~-~-~pl------~--gaDiv~~S~hK~-L~Gp~GG~I~~~~ 328 (358)
..... +.. + +.+ + +.++++.|++|+ ++|.+.|+++.++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~ 268 (423)
T 3ez1_A 219 HHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSE 268 (423)
T ss_dssp CBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECH
T ss_pred hhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCH
Confidence 32222 111 1 111 1 456889999996 5778889999887
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8e-16 Score=149.68 Aligned_cols=193 Identities=16% Similarity=0.127 Sum_probs=127.8
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceEEe-CCCHHHHHHHHHHhc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQP-LSGSPANFEVYTAIL 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg--~~~~~~~v~V~~-~SGt~A~~~a~~all 189 (358)
.+++.+++++...+... ..+|+. + ..++++.+.+++.+.+| .+.+ +|++ ++|++|+..++.+++
T Consensus 44 ~~~~~v~~a~~~~~~~~-~~~y~~-----~---~~~l~~~la~~l~~~~g~~~~~~----~v~~~~g~~~a~~~~~~~~~ 110 (392)
T 3b1d_A 44 EVMPEVKQAIHDYAEQL-VYGYTY-----A---SDELLQAVLDWEKSEHQYSFDKE----DIVFVEGVVPAISIAIQAFT 110 (392)
Confidence 45788999887766431 123322 1 34566666777777777 4443 3444 455779999999999
Q ss_pred cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC--CCCCHHHHHHHhhhcCCeEEEEcCCCCC--CC
Q 018300 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST--GLVDYDMLEKTAILFRPKLIIAGASAYP--RD 265 (358)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~iD~d~le~~i~~~~~klIi~~~s~~~--~~ 265 (358)
++||+|++.++.|.++.. .+...|. +++.+++++++ ..+|++++++.++..++++|++..++++ ..
T Consensus 111 ~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 180 (392)
T 3b1d_A 111 KEGEAVLINSPVYPPFAR--------SVRLNNR--KLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRV 180 (392)
Confidence 999999998876665432 2233444 34444453222 3589999999886447888877655544 33
Q ss_pred C---CHHHHHHHHHHcCCEEEEeccccccccccCCccCCC-------CCCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 266 F---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-------KYCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 266 ~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl-------~gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
. ++++|.++|+++|+++++|++|.. +...+..+.++ .+.++++.|++|++ +|.+.|+++++++
T Consensus 181 ~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~ 255 (392)
T 3b1d_A 181 WEREVLEQIGHLCQKHHVILVSDEIHQD-LTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENP 255 (392)
Confidence 3 489999999999999999999874 33322111111 12348889999997 5678899998754
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.2e-14 Score=135.97 Aligned_cols=184 Identities=13% Similarity=0.030 Sum_probs=119.0
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccC--
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP-- 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~p-- 191 (358)
.+|.|.+++...+.. +..+ ...+ ..+...+ +++++++++|.+. .++++||++|+..++..+..+
T Consensus 53 ~~p~v~~a~~~~~~~-~~~~--~~~~--~~~~~~~----l~~~la~~~g~~~-----v~~~~~gt~a~~~al~~~~~~~~ 118 (392)
T 3ruy_A 53 RHPKIINALIDQANR-VTLT--SRAF--HSDQLGP----WYEKVAKLTNKEM-----VLPMNTGAEAVETAIKTARRWAY 118 (392)
T ss_dssp TCHHHHHHHHHHHTT-CSCC--CTTS--EETTHHH----HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-cccc--cccc--CCHHHHH----HHHHHHHhcCCCE-----EEEeCcHHHHHHHHHHHHHHhhh
Confidence 579999999877643 2111 1111 1232233 4566888998432 466778999999999877544
Q ss_pred --------CCEEEecCCCCCcccccccccchhccccCCc----------eEEEEeceecCCCCCCCHHHHHHHhhhcCCe
Q 018300 192 --------HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI----------YFESMPYRLDESTGLVDYDMLEKTAILFRPK 253 (358)
Q Consensus 192 --------GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~----------~~~~~~~~~~~~~~~iD~d~le~~i~~~~~k 253 (358)
||+|++.++.|.|..... ....+. ..+...++ ..|+++|++.++ .+++
T Consensus 119 ~~~~~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~-~~~~ 184 (392)
T 3ruy_A 119 DVKKVEANRAEIIVCEDNFHGRTMGA-------VSMSSNEEYKRGFGPMLPGIIVIP------YGDLEALKAAIT-PNTA 184 (392)
T ss_dssp HTSCCCTTCCEEEEETTCCCCSSHHH-------HHTCSCTTTTTTCCSCCSSEEEEC------TTCHHHHHHHCC-TTEE
T ss_pred hccCCCCCCcEEEEEcCCcCCCCHhh-------hhccCChhhccccCCCCCCCeeeC------cccHHHHHHHhc-cCeE
Confidence 789999887765532110 001000 00111211 238999999887 4789
Q ss_pred EEEEcCCCC--CCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcCcCcCcc--CcEE
Q 018300 254 LIIAGASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG--PRGG 322 (358)
Q Consensus 254 lIi~~~s~~--~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~hK~L~G--p~GG 322 (358)
+|++.++++ |...+ +++|.++|+++|++|++|++|+ |+...+.. . ...+ ..|++++| |+|+| .++|
T Consensus 185 ~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~~~S--K~l~gG~~~~G 261 (392)
T 3ruy_A 185 AFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQT-GLGRTGKVFACDWDNVTPDMYILG--KALGGGVFPIS 261 (392)
T ss_dssp EEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCE
T ss_pred EEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechh-CCCccccchhhhccCCCCCEEEEc--hhhhCChhhhE
Confidence 998866554 55676 9999999999999999999995 44333321 1 1112 46888775 99987 7899
Q ss_pred EEEEeC
Q 018300 323 MIFFKK 328 (358)
Q Consensus 323 ~I~~~~ 328 (358)
++++++
T Consensus 262 ~~~~~~ 267 (392)
T 3ruy_A 262 CAAANR 267 (392)
T ss_dssp EEEECH
T ss_pred EEEECH
Confidence 999876
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=133.92 Aligned_cols=195 Identities=17% Similarity=0.099 Sum_probs=124.1
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc--c
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--K 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--~ 190 (358)
+.++.|++++...+.... .+ . +.| ..+ ..+.+++++++++|.+.+ ..+++++|++|+..++.++. .
T Consensus 61 ~~~~~v~~a~~~~~~~~~-~~--~-~~~-~~~----~~~~l~~~la~~~~~~~~---~v~~~~gg~~a~~~al~~~~~~~ 128 (395)
T 1vef_A 61 HGNPEVVEAVKRQAETLM-AM--P-QTL-PTP----MRGEFYRTLTAILPPELN---RVFPVNSGTEANEAALKFARAHT 128 (395)
T ss_dssp BTCHHHHHHHHHHHHHCC-CC--C-TTS-CCH----HHHHHHHHHHHTSCTTEE---EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCC-CC--c-ccc-CCH----HHHHHHHHHHHhcCCCcC---EEEEcCcHHHHHHHHHHHHHHHh
Confidence 478999999988775421 11 1 122 223 233356678899987543 23556678889999998764 6
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCceE----------EEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCC
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF----------ESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~----------~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s 260 (358)
+||+|+++++.+.+.... .+...|... +...++ ..|+++|++.++. ++++|++++.
T Consensus 129 ~~~~vi~~~~~y~~~~~~-------~~~~~g~~~~~~~~~p~~~~~~~~~------~~d~~~l~~~i~~-~~~~v~~~~~ 194 (395)
T 1vef_A 129 GRKKFVAAMRGFSGRTMG-------SLSVTWEPKYREPFLPLVEPVEFIP------YNDVEALKRAVDE-ETAAVILEPV 194 (395)
T ss_dssp SCCEEEEETTCCCCSSHH-------HHHTCCCHHHHGGGCSCSSCEEEEC------TTCHHHHHHHCCT-TEEEEEECSE
T ss_pred CCCeEEEEcCCcCCCchh-------hhhhcCCcccccccCCCCCCeeEeC------CCcHHHHHHHhcc-CEEEEEEeCc
Confidence 899999887755432110 112222210 011111 2589999998864 6888888764
Q ss_pred C--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcCcCcCcc-CcEEEEEEeCCC
Q 018300 261 A--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDP 330 (358)
Q Consensus 261 ~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~hK~L~G-p~GG~I~~~~~~ 330 (358)
+ .|...+ +++|.++|+++|++|++|++|+ |+...+.. + ...+ +.|++ |+||+|++ .+.|++++++
T Consensus 195 ~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~-~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~-- 269 (395)
T 1vef_A 195 QGEGGVRPATPEFLRAAREITQEKGALLILDEIQT-GMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMRE-- 269 (395)
T ss_dssp ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEH--
T ss_pred cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCCchhHhhhcCCCCCEE--EEcccccCCCceEEEEehH--
Confidence 3 455667 9999999999999999999998 54322221 1 1122 57877 55999865 4568888887
Q ss_pred CchhHHHHHHhh
Q 018300 331 VLGVELESAINN 342 (358)
Q Consensus 331 ~~~~~~~~~i~~ 342 (358)
++.+++..
T Consensus 270 ----~~~~~l~~ 277 (395)
T 1vef_A 270 ----EVARSMPK 277 (395)
T ss_dssp ----HHHHTSCT
T ss_pred ----HHHhhhcc
Confidence 45555543
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=134.55 Aligned_cols=191 Identities=18% Similarity=0.131 Sum_probs=121.8
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc---
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~--- 190 (358)
.+|.|.+++...+..... + +.. + ..+.. ...++++++++|.+. .+++++|++|+..++.++..
T Consensus 56 ~~p~v~~a~~~~~~~~~~--~-~~~-~-~~~~~----~~l~~~la~~~~~~~-----v~~~~gg~~a~~~al~~~~~~~~ 121 (406)
T 4adb_A 56 AHPELREALNEQASKFWH--T-GNG-Y-TNEPV----LRLAKKLIDATFADR-----VFFCNSGAEANEAALKLARKFAH 121 (406)
T ss_dssp TCHHHHHHHHHHHTTCSC--C-CTT-S-CCHHH----HHHHHHHHHHSSCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccc--c-cCC-c-CCHHH----HHHHHHHHhhCCCCe-----EEEeCcHHHHHHHHHHHHHHHHH
Confidence 488999999877654221 1 111 2 22322 235567889998763 35677889999999988765
Q ss_pred ----CC-CEEEecCCCCCcccccccccchhccccCCc----------eEEEEeceecCCCCCCCHHHHHHHhhhcCCeEE
Q 018300 191 ----PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI----------YFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 255 (358)
Q Consensus 191 ----pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~----------~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klI 255 (358)
+| |+|++.++.+.++... .....+. ..+...++ ..|+++|++.++ .++++|
T Consensus 122 ~~~~~g~~~vi~~~~~y~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~-~~~~~v 187 (406)
T 4adb_A 122 DRYGSHKSGIVAFKNAFHGRTLF-------TVSAGGQPAYSQDFAPLPADIRHAA------YNDINSASALID-DSTCAV 187 (406)
T ss_dssp HHTCTTCCEEEEETTCCCCSSHH-------HHHHSSCGGGTGGGCSCCSSEEEEC------TTCHHHHHTTCS-TTEEEE
T ss_pred hcCCCCCcEEEEECCCcCCCcHH-------HhhccCCccccccCCCCCCCceEeC------CCcHHHHHHHhc-CCeEEE
Confidence 66 9999988766554211 0111110 00111111 248999999886 478999
Q ss_pred EEcCCCCC--CC-----CCHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCc-cCcEEEE
Q 018300 256 IAGASAYP--RD-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMI 324 (358)
Q Consensus 256 i~~~s~~~--~~-----~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~-Gp~GG~I 324 (358)
++. +++| .. .++++|.++|+++|++|++|++|+ |+...+... ..++ ..|++++ +|+++ |.++|++
T Consensus 188 ~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~t~--sK~~~~G~r~G~~ 263 (406)
T 4adb_A 188 IVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT-GVGRTGELYAYMHYGVTPDLLTT--AKALGGGFPVGAL 263 (406)
T ss_dssp EEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEE
T ss_pred EEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhHHHHhcCCCCCEEEe--chhhcCCCCeEEE
Confidence 888 4444 22 368999999999999999999997 554333211 1112 4688754 89985 4578999
Q ss_pred EEeCCCCchhHHHHHHhh
Q 018300 325 FFKKDPVLGVELESAINN 342 (358)
Q Consensus 325 ~~~~~~~~~~~~~~~i~~ 342 (358)
++++ ++.+++..
T Consensus 264 ~~~~------~~~~~~~~ 275 (406)
T 4adb_A 264 LATE------ECARVMTV 275 (406)
T ss_dssp EECH------HHHHTCCT
T ss_pred EEcH------HHHhhhcc
Confidence 8877 56555544
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.2e-15 Score=140.07 Aligned_cols=195 Identities=11% Similarity=0.065 Sum_probs=123.4
Q ss_pred cccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCC-C---CcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCC--
Q 018300 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYY-G---GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-- 177 (358)
Q Consensus 104 ~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~-~---G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SG-- 177 (358)
.+.+.+++..+|+.|++++.+.+.+. ..++...| . +... .++.+.+++++++++|++..+ +|.+++|
T Consensus 4 ~~~~~~g~~~~p~~v~~a~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~~---~v~~~~g~g 76 (360)
T 1w23_A 4 VFNFNAGPSALPKPALERAQKELLNF---NDTQMSVMELSHRSQSY-EEVHEQAQNLLRELLQIPNDY---QILFLQGGA 76 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSS---TTSSSCGGGSCTTSHHH-HHHHHHHHHHHHHHHTCCTTE---EEEEESSHH
T ss_pred eEeecCCCcCCCHHHHHHHHHHhhhh---ccccccccccCCCCHHH-HHHHHHHHHHHHHHhCCCCCc---eEEEECCcc
Confidence 35666777889999999998876532 11221111 0 2222 233444788899999996321 3444444
Q ss_pred HHHHHHHHHHhccC---CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHH-HhhhcCCe
Q 018300 178 SPANFEVYTAILKP---HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK-TAILFRPK 253 (358)
Q Consensus 178 t~A~~~a~~all~p---GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~-~i~~~~~k 253 (358)
++|+.+++.+++.+ ||.|++..+ +|.+. ..+...| .+ +.++++++++.+|++++++ .+. .++|
T Consensus 77 t~al~~~~~~l~~~~~~g~~vi~~~~---~~~~~------~~~~~~g-~~--~~v~~~~~~~~~d~~~l~~~~i~-~~~k 143 (360)
T 1w23_A 77 SLQFTMLPMNLLTKGTIGNYVLTGSW---SEKAL------KEAKLLG-ET--HIAASTKANSYQSIPDFSEFQLN-ENDA 143 (360)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEECSHH---HHHHH------HHHHTTS-EE--EEEEECGGGTSCSCCCGGGCCCC-TTEE
T ss_pred hHHHHHHHHHhcCCCCcccEEEecch---hHHHH------HHHHHhC-Ce--EEeecccccCcCCccchHhhccC-CCCC
Confidence 67999999998765 556665443 22111 1123445 44 4445654355689999988 764 3789
Q ss_pred EEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 254 LIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 254 lIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+|++..+++ |...+ ++++++|++|++|++|+.|.. +.++...|++++|+||+++ |.| |+++++++
T Consensus 144 ~v~~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~~-----~~~~~~~di~~~s~sK~~~-~~G~G~~~~~~~ 211 (360)
T 1w23_A 144 YLHITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILSR-----PLKVNQFGMIYAGAQKNLG-PSGVTVVIVKKD 211 (360)
T ss_dssp EEEEESEETTTTEECS-----SCCCCCSSCEEEECTTTTTSS-----CCCGGGCSEEEEETTTTTS-CTTCEEEEEEHH
T ss_pred EEEEeCCCCCcceecc-----cccccCCceEEEechhhcCCC-----CcCcccCCEEEEEcccccC-CCCcEEEEEcHH
Confidence 888765443 44555 333489999999999986642 2223334899999999875 656 99998873
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-14 Score=143.10 Aligned_cols=190 Identities=16% Similarity=0.188 Sum_probs=117.8
Q ss_pred HHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccC----
Q 018300 116 RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP---- 191 (358)
Q Consensus 116 ~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~p---- 191 (358)
+.|++++...+.. |. ..|+..+...++ ++++++++|.+. .++++|||+|+..++.++.++
T Consensus 53 ~~v~~a~~~~l~~----~~---~~y~~~~~~~~l----~~~la~~~~~~~-----v~~t~~gt~A~~~al~~~~~~~~~~ 116 (467)
T 2oqx_A 53 GAVTQSMQAAMMR----GD---EAYSGSRSYYAL----AESVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKREQE 116 (467)
T ss_dssp SCCCHHHHHHTTS----CC---CCSSSCHHHHHH----HHHHHHHHCCSE-----EEEEC--CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc----Cc---ceeccCchhHHH----HHHHHHHhCcCc-----EEEcCCcHHHHHHHHHHHhcccccc
Confidence 7778887766532 11 123334433444 456888888754 356778999999999999888
Q ss_pred -C----CEEEecCCCCCcccccccccchhccccCCceEEEE----eceec---CCCCCCCHHHHHHHhhh---cCCeEEE
Q 018300 192 -H----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM----PYRLD---ESTGLVDYDMLEKTAIL---FRPKLII 256 (358)
Q Consensus 192 -G----D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~----~~~~~---~~~~~iD~d~le~~i~~---~~~klIi 256 (358)
| |+|++. ..|+.. +. ......+...... +++.+ +.++.+|+++|++.++. .++++|+
T Consensus 117 ~G~~~~d~Ii~~-~~h~~t--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi 188 (467)
T 2oqx_A 117 KGLDRSKMVAFS-NYFFDT--TQ-----GHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIV 188 (467)
T ss_dssp HCCCTTTCEEEE-SSCCHH--HH-----HHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEE
T ss_pred CCCCccceEEec-cccccc--ch-----hhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEE
Confidence 9 997765 333211 00 0011122211100 11111 13457899999999874 3688888
Q ss_pred EcCCCC---CCCC---CHHHHHHHHHHcCCEEEEeccccc-ccc--------ccCCccCCC-----CCCcEEEEcCcCcC
Q 018300 257 AGASAY---PRDF---DYPRMRQIADAVGALLMMDMAHIS-GLV--------AASVVADPF-----KYCDVVTTTTHKSL 316 (358)
Q Consensus 257 ~~~s~~---~~~~---dl~~I~~ia~e~g~~livD~Ah~~-Gl~--------~~g~~~~pl-----~gaDiv~~S~hK~L 316 (358)
+..+++ |... ++++|+++|++||++|++|++|+. +.. ..+.....+ .++|++++|+||++
T Consensus 189 ~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~ 268 (467)
T 2oqx_A 189 ATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDA 268 (467)
T ss_dssp EESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTT
T ss_pred EeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEeccccc
Confidence 876554 3343 478999999999999999999876 432 222111111 24788899999999
Q ss_pred ccCcEEEEEEeCC
Q 018300 317 RGPRGGMIFFKKD 329 (358)
Q Consensus 317 ~Gp~GG~I~~~~~ 329 (358)
+.|.||+++++++
T Consensus 269 g~~~Gg~~~~~~~ 281 (467)
T 2oqx_A 269 MVPMGGLLCMKDD 281 (467)
T ss_dssp CCSSCEEEEECSG
T ss_pred CCCCceEEEecCh
Confidence 7777899888764
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=140.68 Aligned_cols=194 Identities=13% Similarity=0.081 Sum_probs=124.3
Q ss_pred cHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceEEeC-CCHHHHHHHHHH----
Q 018300 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPL-SGSPANFEVYTA---- 187 (358)
Q Consensus 115 s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg--~~~~~~~v~V~~~-SGt~A~~~a~~a---- 187 (358)
++.+++++...+.. .+|+.. ..|.+ ++++.+.+++.+.++ ...... .+|+++ +|++|+..++.+
T Consensus 117 ~~~~v~a~~~~~~~---~~y~~~--~~g~~---~lr~~ia~~l~~~~~~~~~~~~~-~~i~~t~G~t~al~~~~~~l~~~ 187 (533)
T 3f6t_A 117 RDKVVAEWVNGAVA---NNYPVP--DRCLV---NTEKIINYFLQELSYKDANLAEQ-TDLFPTEGGTAAIVYAFHSLAEN 187 (533)
T ss_dssp HHHHHHHHHHHHHT---CSCCSS--SSCCH---HHHHHHHHHHHHHHTTTCCCGGG-EEEEEEEHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHh---CCCCCC--cccHH---HHHHHHHHHHHHhcCCCCCCCCc-ceEEEECCHHHHHHHHHHHhhhh
Confidence 56666666555432 123210 12333 566666666765523 222100 134444 556799999988
Q ss_pred -hccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec-CCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--C
Q 018300 188 -ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAILFRPKLIIAGASAY--P 263 (358)
Q Consensus 188 -ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~ 263 (358)
+++|||+|++.++.|.++.. .+...|..+..++++.+ ++++.+|+++|++.+.. ++++|++..+++ |
T Consensus 188 ~l~~~gd~Viv~~p~~~~~~~--------~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~-~~k~v~l~~p~NPtG 258 (533)
T 3f6t_A 188 HLLKKGDKIAINEPIFTPYLR--------IPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP-SIKALIVVNPTNPTS 258 (533)
T ss_dssp TSSCTTCEEEEESSCCHHHHT--------SGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCT-TEEEEEEESSCTTTC
T ss_pred hccCCcCEEEEcCCCcHHHHH--------HHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCC-CCeEEEEeCCCCCCc
Confidence 78999999999987766532 22345654555554332 23467999999998764 788888765555 4
Q ss_pred CCCCHH---HHHHHHH-HcCCEEEEeccccccccccCCccCCC--C-CCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 264 RDFDYP---RMRQIAD-AVGALLMMDMAHISGLVAASVVADPF--K-YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 264 ~~~dl~---~I~~ia~-e~g~~livD~Ah~~Gl~~~g~~~~pl--~-gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
...+.+ +|+++|+ ++|+++++|++|. ++.... +... . +.++++.|++|++ .|.|.|+++++++
T Consensus 259 ~~~~~~~l~~l~~la~~~~~~~li~De~y~-~~~~~~--~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~ 330 (533)
T 3f6t_A 259 KEFDTNALNAIKQAVEKNPKLMIISDEVYG-AFVPNF--KSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEK 330 (533)
T ss_dssp BCCCHHHHHHHHHHHHHCTTCEEEEECTTG-GGSTTC--CCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESS
T ss_pred cccCHHHHHHHHHHHHhCCCCEEEEcCCcc-ccccCc--cCHhhcCCCCEEEEecCcccCCCcccceEEEEECcH
Confidence 466655 7888888 6899999999987 444321 1111 1 3459999999997 5777899999886
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=133.75 Aligned_cols=226 Identities=16% Similarity=0.170 Sum_probs=141.7
Q ss_pred ccccccChH-HHHHHHHHHHHhh-hcccccccC-------CCCcHHHHHHHhhhh-hcccCCCCCCCcCCCCcHHHHHHH
Q 018300 81 YSLGEADPE-VCEIITKEKERQF-KSLELIASE-------NFTSRAVMEAVGSCL-TNKYSEGLPGKRYYGGNEYIDELE 150 (358)
Q Consensus 81 ~~l~~~d~~-~~~~i~~e~~~~~-~~i~lias~-------n~~s~~V~~al~~~l-~~~~~~G~pg~r~~~G~~~~~~lE 150 (358)
.++...+|. ++.+.++.+.... +-|+|--++ .++++.|.+++. .+ ......+|+. ..|.+ ++.
T Consensus 6 ~~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~---~~G~~---~lr 78 (405)
T 3k7y_A 6 SSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLL---GNGTE---DFS 78 (405)
T ss_dssp GGCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCT---TSSCH---HHH
T ss_pred hcCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCC---CCCcH---HHH
Confidence 567777776 5666655444333 556765332 346889999876 32 2222334543 23444 566
Q ss_pred HHHHHHHHHHcCCCC-CCCcce-EEeCCCHHHHHHHHHHhcc--CCCEEEecCCCCCcccccccccchhccccCCceEEE
Q 018300 151 TLCQKRALAAFNLDE-NKWGVN-VQPLSGSPANFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 226 (358)
Q Consensus 151 ~~~~~~la~lfg~~~-~~~~v~-V~~~SGt~A~~~a~~all~--pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~ 226 (358)
+.+.+++....+... .++ ++ +++.+|+.|+..++.++.+ | |+|++++|.|.+|.. .+...|. ++
T Consensus 79 ~aia~~~~~~~~~~~~~~~-i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~--------~~~~~g~--~~ 146 (405)
T 3k7y_A 79 TLTQNLIFGNNSKYIEDKK-ICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVN--------MIESRGF--NL 146 (405)
T ss_dssp HHHHHHHHCSSCTTTTTTC-EEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHH--------HHHTTTC--EE
T ss_pred HHHHHHHcCCCCccccccc-eEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHH--------HHHHcCC--eE
Confidence 665555543333221 111 22 3445566799999988877 9 999999987766532 3345676 44
Q ss_pred Eecee-cCCCCCCCHHHHHHHhhhc-CCeEEEEcCC-CCCC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCCc
Q 018300 227 MPYRL-DESTGLVDYDMLEKTAILF-RPKLIIAGAS-AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV 298 (358)
Q Consensus 227 ~~~~~-~~~~~~iD~d~le~~i~~~-~~klIi~~~s-~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~ 298 (358)
+++++ ++++..+|++++++.+... ++++|+++.+ +||+ ..+ +++|.++|+++|+++++|++|. ++...+..
T Consensus 147 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~-~l~~~~~~ 225 (405)
T 3k7y_A 147 KYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQ-GFGHTNLE 225 (405)
T ss_dssp EEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCT-TTSSSSTT
T ss_pred EEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcc-cccCCCcc
Confidence 55545 3345689999999988653 4578888754 5654 444 6778899999999999999965 55543210
Q ss_pred ----c-CCC-C-CC-cEEEEcCcCcC--ccCcEEEEEE
Q 018300 299 ----A-DPF-K-YC-DVVTTTTHKSL--RGPRGGMIFF 326 (358)
Q Consensus 299 ----~-~pl-~-ga-Div~~S~hK~L--~Gp~GG~I~~ 326 (358)
+ ..+ + +- -+++.|++|++ +|.|-|+++.
T Consensus 226 ~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~ 263 (405)
T 3k7y_A 226 EDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHI 263 (405)
T ss_dssp GGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEE
T ss_pred cchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEE
Confidence 0 011 1 22 27789999997 6999999865
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.50 E-value=5.9e-14 Score=139.40 Aligned_cols=159 Identities=18% Similarity=0.212 Sum_probs=105.8
Q ss_pred HHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc----CCCE---EEecCCCCCcccccccccchhccccCCceEEE
Q 018300 154 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK----PHDR---IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 226 (358)
Q Consensus 154 ~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~----pGD~---Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~ 226 (358)
++++++++|.+. .++++|||+|+..++.++++ |||+ |++.. .|.+. .. ..+...|.. +
T Consensus 82 ~~~la~~~~~~~-----v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~-~~~~~--~~-----~~~~~~g~~--~ 146 (467)
T 1ax4_A 82 KDKAKELFNYDY-----IIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISN-FHFDT--TA-----AHVELNGCK--A 146 (467)
T ss_dssp HHHHHHHHCCCE-----EEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEES-SCCHH--HH-----HHHHHTTCE--E
T ss_pred HHHHHHHcCCCc-----EEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEec-cccch--hh-----HHHhccCCc--e
Confidence 456888888753 35667789999999999988 9998 88773 33111 00 122344543 2
Q ss_pred Eecee----cC-----CCCCCCHHHHHHHhhhc---CCeEEEEcCCCC---CCCC---CHHHHHHHHHHcCCEEEEeccc
Q 018300 227 MPYRL----DE-----STGLVDYDMLEKTAILF---RPKLIIAGASAY---PRDF---DYPRMRQIADAVGALLMMDMAH 288 (358)
Q Consensus 227 ~~~~~----~~-----~~~~iD~d~le~~i~~~---~~klIi~~~s~~---~~~~---dl~~I~~ia~e~g~~livD~Ah 288 (358)
+..+. +. .++.+|+++|++.++.. ++++|++..+++ |... ++++|+++|++||++|++|++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~ 226 (467)
T 1ax4_A 147 INIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSAR 226 (467)
T ss_dssp EECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred ecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchh
Confidence 32221 11 14578999999998752 578888866553 3343 4688999999999999999998
Q ss_pred cc-ccc--------ccCCccCCC-----CCCcEEEEcCcCcCccCcEEEEEEe
Q 018300 289 IS-GLV--------AASVVADPF-----KYCDVVTTTTHKSLRGPRGGMIFFK 327 (358)
Q Consensus 289 ~~-Gl~--------~~g~~~~pl-----~gaDiv~~S~hK~L~Gp~GG~I~~~ 327 (358)
.. |.. ..+.....+ ..+|++++|+||+++.|.||+++++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~Gg~~~~~ 279 (467)
T 1ax4_A 227 FCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIR 279 (467)
T ss_dssp HHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEES
T ss_pred hhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcceEEEeC
Confidence 76 322 112100011 2478999999999876668888887
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.4e-13 Score=130.80 Aligned_cols=209 Identities=15% Similarity=0.044 Sum_probs=124.7
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc---c
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---K 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all---~ 190 (358)
.+|.|++++...+..... ++..+| ..+. .++ .+++++++++.+.+ ..+++++|++|+..++.++. +
T Consensus 60 ~~p~v~~a~~~~~~~~~~--~~~~~~--~~~~---~~~-l~~~la~~~~~~~~---~v~~~~ggtea~~~ai~~~~~~~~ 128 (429)
T 1s0a_A 60 NHPQLNAAMKSQIDAMSH--VMFGGI--THAP---AIE-LCRKLVAMTPQPLE---CVFLADSGSVAVEVAMKMALQYWQ 128 (429)
T ss_dssp SCHHHHHHHHHHHHHCSC--CCCSSE--ECHH---HHH-HHHHHHHHSCTTCC---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccc--cccccc--CCHH---HHH-HHHHHHHhCCCCCC---EEEEeCCHHHHHHHHHHHHHHHhc
Confidence 589999999887754321 111112 1222 222 34568899987654 23556678889999987653 3
Q ss_pred ----CCCEEEecCCCCCccccccc-ccc-----hhccccCCceEEEEeceec---CCCCCCCHHHHHHHhhh--cCCeEE
Q 018300 191 ----PHDRIMGLDLPHGGHLSHGF-MTP-----KRRVSGTSIYFESMPYRLD---ESTGLVDYDMLEKTAIL--FRPKLI 255 (358)
Q Consensus 191 ----pGD~Vl~~~~~~ggh~s~~~-~~~-----~~~~~~~g~~~~~~~~~~~---~~~~~iD~d~le~~i~~--~~~klI 255 (358)
|||+|++.++.+.++..... ... ..........+..++++.. ...+.+|+++|++.+++ .++++|
T Consensus 129 ~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v 208 (429)
T 1s0a_A 129 AKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAV 208 (429)
T ss_dssp HHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEE
T ss_pred ccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEE
Confidence 79999999876544311000 000 0000000011344444321 11236899999998864 356788
Q ss_pred EEcCC-CC--CCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcCcCcCcc--CcEEE
Q 018300 256 IAGAS-AY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG--PRGGM 323 (358)
Q Consensus 256 i~~~s-~~--~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~hK~L~G--p~GG~ 323 (358)
++++. ++ |...+ +++|.++|+++|++|++|++|+ |+...+.. . ..++ ..|++++| |+|+| .+.|+
T Consensus 209 i~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~g~~g~~~~~~~~~~~~d~~t~s--K~l~~G~~~iG~ 285 (429)
T 1s0a_A 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT-GFGRTGKLFACEHAEIAPDILCLG--KALTGGTMTLSA 285 (429)
T ss_dssp EECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTSSSCCEE
T ss_pred EEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-CCcccchHHHhhhcCCCCCEEEec--ccccCCCccceE
Confidence 88765 43 54455 9999999999999999999997 33222211 1 1122 56887655 99876 46799
Q ss_pred EEEeCCCCchhHHHHHHhh
Q 018300 324 IFFKKDPVLGVELESAINN 342 (358)
Q Consensus 324 I~~~~~~~~~~~~~~~i~~ 342 (358)
+++++ ++.+.+..
T Consensus 286 ~~~~~------~~~~~l~~ 298 (429)
T 1s0a_A 286 TLTTR------EVAETISN 298 (429)
T ss_dssp EEECH------HHHHHHHT
T ss_pred EEeCH------HHHHHhhc
Confidence 98876 56666654
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-13 Score=129.50 Aligned_cols=193 Identities=17% Similarity=0.153 Sum_probs=121.1
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHH---hc-
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA---IL- 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~a---ll- 189 (358)
.++.+++++...+... +.+..+| . .+...+ .++++++++|++ + ..+++++|++|+..++.+ +.
T Consensus 45 ~~~~v~~a~~~~~~~~---~~~~~~y-~-~~~~~~----l~~~la~~~g~~-~---~v~~~~g~t~a~~~~~~~~~~~~~ 111 (375)
T 2eh6_A 45 AYPKLTEALKEQVEKL---LHVSNLY-E-NPWQEE----LAHKLVKHFWTE-G---KVFFANSGTESVEAAIKLARKYWR 111 (375)
T ss_dssp SCHHHHHHHHHHHHHC---SCCCTTB-C-CHHHHH----HHHHHHHTSSSC-E---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc---cccCccc-C-CHHHHH----HHHHHHhhcCCC-C---eEEEeCchHHHHHHHHHHHHHHhc
Confidence 6899999998876532 1222223 2 222223 456788999983 2 135566778899998865 35
Q ss_pred --cCC-CEEEecCCCCCcccccccccchhccccCCce-----EE-----EEeceecCCCCCCCHHHHHHHhhhcCCeEEE
Q 018300 190 --KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----FE-----SMPYRLDESTGLVDYDMLEKTAILFRPKLII 256 (358)
Q Consensus 190 --~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-----~~-----~~~~~~~~~~~~iD~d~le~~i~~~~~klIi 256 (358)
+|| |+|++.++.+.++.... ....+.. +. ...++ .+|+++|++.++. ++++|+
T Consensus 112 ~~~~g~~~vl~~~~~y~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~~~v~ 177 (375)
T 2eh6_A 112 DKGKNKWKFISFENSFHGRTYGS-------LSATGQPKFHKGFEPLVPGFSYAK------LNDIDSVYKLLDE-ETAGII 177 (375)
T ss_dssp HTTCCCCEEEEEBTCCCCSSHHH-------HHHCBCGGGTTTTCSCCSSEEEEC------TTCHHHHHTTCCT-TEEEEE
T ss_pred cCCCCCCEEEEECCCcCCCchhh-------hhhcCCccccCCCCCCCCCceeCC------CchHHHHHHHhcC-CeEEEE
Confidence 789 99999987765532110 0111110 00 11111 2589999998764 788998
Q ss_pred EcCCCC--CCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCcc-CcEEEEEE
Q 018300 257 AGASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PRGGMIFF 326 (358)
Q Consensus 257 ~~~s~~--~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~G-p~GG~I~~ 326 (358)
+.++++ |...+ +++|.++|+++|+++++|++|+ |+...+... ..++ ..|++++| |+|.+ .+.|++++
T Consensus 178 ~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~ 254 (375)
T 2eh6_A 178 IEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQT-GIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIGAILA 254 (375)
T ss_dssp ECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEE
T ss_pred EeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeEEEEE
Confidence 876554 44557 9999999999999999999998 332222111 1112 37888776 88865 45588888
Q ss_pred eCCCCchhHHHHHHhh
Q 018300 327 KKDPVLGVELESAINN 342 (358)
Q Consensus 327 ~~~~~~~~~~~~~i~~ 342 (358)
++ ++.+++..
T Consensus 255 ~~------~~~~~~~~ 264 (375)
T 2eh6_A 255 RE------EVAQSFTP 264 (375)
T ss_dssp EH------HHHTTCCT
T ss_pred cH------HHHhhhcC
Confidence 76 45555443
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=140.68 Aligned_cols=226 Identities=14% Similarity=0.110 Sum_probs=136.3
Q ss_pred ccccCh--HHHHHHHHHHHHhh--h-------cccccccC-CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHH
Q 018300 83 LGEADP--EVCEIITKEKERQF--K-------SLELIASE-NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELE 150 (358)
Q Consensus 83 l~~~d~--~~~~~i~~e~~~~~--~-------~i~lias~-n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE 150 (358)
+..+++ ++++.+.+-+.... . .+++-..+ .+.++.+++++...+.. .+||.. .++.+ ..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~l~~g~~~~~~~~~~~al~~~~~~---~~Y~~~--~g~~~---lr~ 145 (546)
T 2zy4_A 74 VGGLAKIDGIEGRFERYIAENRDQEGVRFLGKSLSYVRDQLGLDPAAFLHEMVDGILG---CNYPVP--PRMLN---ISE 145 (546)
T ss_dssp EEECCCSTTHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHT---CSCCSS--SSCCH---HHH
T ss_pred hccCCccccchhHHHHHHHhcCCCCcchhHHhhhecccCCCCCCChHHHHHHHHhhhc---CCCCCC--cCCHH---HHH
Confidence 344444 66666666555432 1 22221122 24566777777665531 345542 12233 233
Q ss_pred HHHHHHHHHHcCCC--CCCCcceEEeCCCH-HHHHHHHHH-----hccCCCEEEecCCCCCcccccccccchhccccCCc
Q 018300 151 TLCQKRALAAFNLD--ENKWGVNVQPLSGS-PANFEVYTA-----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (358)
Q Consensus 151 ~~~~~~la~lfg~~--~~~~~v~V~~~SGt-~A~~~a~~a-----ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (358)
+.++.++.+.++.. .... .+|++++|+ +|+..++.+ +++|||+|+++++.|.++.. ...+.+.
T Consensus 146 ~ia~~~~~~~~~~~~~~~~~-~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~--------~~~~~~~ 216 (546)
T 2zy4_A 146 KIVRQYIIREMGADAIPSES-VNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIE--------IPELAQY 216 (546)
T ss_dssp HHHHHHHHHHTTCTTSCGGG-EEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHH--------HHHSTTS
T ss_pred HHHHHHHHHhccCCCCCCCc-ceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHH--------HHHHcCC
Confidence 43444555555431 1001 246666665 588888877 57999999999887665432 1122332
Q ss_pred eEEEEeceecCCC-CCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC---HHHHHHHH--HHcCCEEEEeccccccccc
Q 018300 223 YFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIA--DAVGALLMMDMAHISGLVA 294 (358)
Q Consensus 223 ~~~~~~~~~~~~~-~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d---l~~I~~ia--~e~g~~livD~Ah~~Gl~~ 294 (358)
..++++++.++++ ..+|+++|++.+. .++|+|++..++|| ...+ +++|.++| +++|++|++|++|. ++..
T Consensus 217 g~~~~~v~~~~~~~~~~d~~~l~~~~~-~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~-~~~~ 294 (546)
T 2zy4_A 217 ALEEVAINADPSLNWQYPDSELDKLKD-PAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYG-TFAD 294 (546)
T ss_dssp CCEEEEEECBGGGTTBCCHHHHGGGGS-TTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTG-GGST
T ss_pred CcEEEEEecCcccCCCCCHHHHHHhhC-CCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcch-hhcc
Confidence 3455666665443 4699999988764 46888877666665 4555 66788888 78999999999987 3332
Q ss_pred cCCccCCCC---CCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 295 ASVVADPFK---YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 295 ~g~~~~pl~---gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
. .++.+. +.++++.|++|++ +|.|.|+++++++
T Consensus 295 ~--~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~ 332 (546)
T 2zy4_A 295 D--FQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQ 332 (546)
T ss_dssp T--CCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEEESS
T ss_pred c--CcCHHHhCCCCEEEEEeCccccCCCCcceEEEEECCH
Confidence 1 111111 4568899999997 5778899999885
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-13 Score=133.36 Aligned_cols=226 Identities=14% Similarity=0.133 Sum_probs=126.3
Q ss_pred cccccccChH-HHHHHHHHHHHhh-hcccccccC---CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHH
Q 018300 80 DYSLGEADPE-VCEIITKEKERQF-KSLELIASE---NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQ 154 (358)
Q Consensus 80 ~~~l~~~d~~-~~~~i~~e~~~~~-~~i~lias~---n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~ 154 (358)
..++...+|+ ++.+.++.+.... .-++|-.++ ...++.+.+++.... .....+|.. ..|.+ ++++.
T Consensus 17 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~-~~~~~~y~~---~~g~~---~lr~~-- 87 (409)
T 4eu1_A 17 QGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQAT-LGTNMDYAP---VTGIA---SFVEE-- 87 (409)
T ss_dssp ----------CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTCC-CCSCCCCCC---TTCCH---HHHHH--
T ss_pred hhcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhcC-ccccccCCC---CCCcH---HHHHH--
Confidence 3567777777 6777766555433 445664332 234566777766541 112223322 12322 45544
Q ss_pred HHHHHH-cCCC-----CCCCcceEEeCCCHHHHHHH---HHHhccCCCEEEecCCCCCcccccccccchhccccCCceEE
Q 018300 155 KRALAA-FNLD-----ENKWGVNVQPLSGSPANFEV---YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE 225 (358)
Q Consensus 155 ~~la~l-fg~~-----~~~~~v~V~~~SGt~A~~~a---~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~ 225 (358)
++++ +|.+ ++++ ..+++.+|+.|+..+ +.+++++||+|++.++.|.++.. .+...|..
T Consensus 88 --ia~~~~~~~~~~~~~~~i-~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~~-- 154 (409)
T 4eu1_A 88 --AQKLCFGPTCAALRDGRI-ASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHES--------IFAKAGME-- 154 (409)
T ss_dssp --HHHHHHCSSCHHHHTTCE-EEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHH--------HHHHTTCE--
T ss_pred --HHHHHcCCCchhhccCce-eeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH--------HHHHcCCe--
Confidence 4443 3655 3211 012356677777664 44567899999999887766532 23456654
Q ss_pred EEeceec-CCCCCCCHHHHHHHhhhc--CCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCC
Q 018300 226 SMPYRLD-ESTGLVDYDMLEKTAILF--RPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASV 297 (358)
Q Consensus 226 ~~~~~~~-~~~~~iD~d~le~~i~~~--~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~ 297 (358)
+++++++ ++++.+|++++++.++.. +++++++..+++| ...+ +++|.++|+++|+++++|++|. ++...+.
T Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~-~~~~~~~ 233 (409)
T 4eu1_A 155 LTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQ-GFATGQL 233 (409)
T ss_dssp EEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTTTSCH
T ss_pred EEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccc-ccccCCc
Confidence 4444442 345689999999988642 3556666666655 4555 5669999999999999999976 3333321
Q ss_pred ----cc-CCC-C-CC-cEEEEcCcCcC--ccCcEEEE--EEeC
Q 018300 298 ----VA-DPF-K-YC-DVVTTTTHKSL--RGPRGGMI--FFKK 328 (358)
Q Consensus 298 ----~~-~pl-~-ga-Div~~S~hK~L--~Gp~GG~I--~~~~ 328 (358)
.+ ..+ + +. .+++.|++|++ +|.|.|++ +..+
T Consensus 234 ~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~ 276 (409)
T 4eu1_A 234 DYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTAS 276 (409)
T ss_dssp HHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSS
T ss_pred ccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCC
Confidence 00 011 2 22 37788999997 46677886 5444
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=134.86 Aligned_cols=170 Identities=12% Similarity=0.017 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHcCCC--CCCCcceEEeCCCHHHHHHHHHHhccCCC-----EEEec-CCCCCcccccccccchhcc-
Q 018300 147 DELETLCQKRALAAFNLD--ENKWGVNVQPLSGSPANFEVYTAILKPHD-----RIMGL-DLPHGGHLSHGFMTPKRRV- 217 (358)
Q Consensus 147 ~~lE~~~~~~la~lfg~~--~~~~~v~V~~~SGt~A~~~a~~all~pGD-----~Vl~~-~~~~ggh~s~~~~~~~~~~- 217 (358)
.++++.+.+++.+.+|.. ++ -.+++++|++|+..++.++++||| +|+++ ++.|.++..... ..
T Consensus 78 ~~lr~~ia~~~~~~~g~~~~~~---~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~-----~~~ 149 (417)
T 3g7q_A 78 TALLNALAVLLRETLGWDIEPQ---NIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGL-----EDD 149 (417)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGG---GEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC----------C
T ss_pred HHHHHHHHHHHHHHhCCCCCcc---cEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhcc-----chh
Confidence 356666666666666643 33 234445666799999999999988 89987 776655432110 00
Q ss_pred ccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC--CCCCC---HHHHHHHHHHcCCEEEEeccccccc
Q 018300 218 SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFD---YPRMRQIADAVGALLMMDMAHISGL 292 (358)
Q Consensus 218 ~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~--~~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl 292 (358)
...+....+.+++.+..+..+|+++++ +. .++++|++..+++ |...+ +++|.++|+++|+++++|++|....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~-~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~ 226 (417)
T 3g7q_A 150 LFVSARPNIELLPEGQFKYHVDFEHLH--IG-EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPF 226 (417)
T ss_dssp CEEECCCEEEEEGGGEEEEECCGGGCC--CC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTT
T ss_pred hhccccCcccccCCcccccccCHHHhc--cc-cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccc
Confidence 011111233333222112357888887 43 3678888766555 45666 8889999999999999999986422
Q ss_pred c---ccCCccCCCCCCcEEEEcCcCcC-ccCcEEEEEEeC
Q 018300 293 V---AASVVADPFKYCDVVTTTTHKSL-RGPRGGMIFFKK 328 (358)
Q Consensus 293 ~---~~g~~~~pl~gaDiv~~S~hK~L-~Gp~GG~I~~~~ 328 (358)
. ..+..+ ...+.++++.|++|++ +|.+.|+++.++
T Consensus 227 ~~~~~~~~~~-~~~~~~i~~~s~sK~~~~G~r~G~~~~~~ 265 (417)
T 3g7q_A 227 PGIIFSEARP-LWNPNIILCMSLSKLGLPGSRCGIIIAND 265 (417)
T ss_dssp TCCBCSCCCC-CCCTTEEEEEESGGGTCTTSCCEEEECCH
T ss_pred cccccccccc-CCCCCEEEEEechhccCCCcceEEEEeCH
Confidence 1 111111 1125678899999963 456779998876
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.6e-13 Score=131.45 Aligned_cols=222 Identities=12% Similarity=0.023 Sum_probs=131.6
Q ss_pred ccccccChHHHHHHHHHHHHh--hhcccccccC-------CCCcHHHHHHHhhhhhcc-cCCCCCCCcCCCCcHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQ--FKSLELIASE-------NFTSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELE 150 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~--~~~i~lias~-------n~~s~~V~~al~~~l~~~-~~~G~pg~r~~~G~~~~~~lE 150 (358)
+++...++..+..+.+..... ...++|-.++ ..+++.|.+++...+... ...+|.. ..|. .+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~---~~g~---~~lr 80 (412)
T 1ajs_A 7 AEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLP---ILGL---AEFR 80 (412)
T ss_dssp TTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCC---TTCC---HHHH
T ss_pred hhCcccCCchHHHHHHHHhhcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCC---CCCC---HHHH
Confidence 345555555444443333321 2345555333 245689999998765221 1223321 1122 2444
Q ss_pred HHHHHHHHHHc-CC-----CCCCCcceEE--eCCCHHHHHHHHH--HhccCC-----CEEEecCCCCCcccccccccchh
Q 018300 151 TLCQKRALAAF-NL-----DENKWGVNVQ--PLSGSPANFEVYT--AILKPH-----DRIMGLDLPHGGHLSHGFMTPKR 215 (358)
Q Consensus 151 ~~~~~~la~lf-g~-----~~~~~~v~V~--~~SGt~A~~~a~~--all~pG-----D~Vl~~~~~~ggh~s~~~~~~~~ 215 (358)
+. +++++ +. ++++ .++ +.+|+.|+..++. .+++|| |+|++.++.|.++..
T Consensus 81 ~~----la~~~~~~~~~~~~~~~---v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~-------- 145 (412)
T 1ajs_A 81 TC----ASRLALGDDSPALQEKR---VGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNG-------- 145 (412)
T ss_dssp HH----HHHHHHCTTCHHHHTTC---EEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHH--------
T ss_pred HH----HHHHHhcCCCCccCCCc---EEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHH--------
Confidence 44 55555 32 3321 233 5677789998853 557899 999999887766422
Q ss_pred ccccCCce-EEEEeceec-CCCCCCCHHHHHHHhhhc--CCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEec
Q 018300 216 RVSGTSIY-FESMPYRLD-ESTGLVDYDMLEKTAILF--RPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDM 286 (358)
Q Consensus 216 ~~~~~g~~-~~~~~~~~~-~~~~~iD~d~le~~i~~~--~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~ 286 (358)
.+...|.. +..++ ++ ++++.+|++++++.+... ++++|++..+++| ...+ +++|.++|+++|+++++|+
T Consensus 146 ~~~~~g~~~~~~~~--~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De 223 (412)
T 1ajs_A 146 VFTTAGFKDIRSYR--YWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDS 223 (412)
T ss_dssp HHHHTTCSCEEEEE--CEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHcCCceeEEEe--eecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 23345654 44444 42 135679999999988753 4567766666654 3443 6789999999999999999
Q ss_pred cccccccccC---Cc-c-CCCC-CCc--EEEEcCcCcCc--cCcEEEEEE
Q 018300 287 AHISGLVAAS---VV-A-DPFK-YCD--VVTTTTHKSLR--GPRGGMIFF 326 (358)
Q Consensus 287 Ah~~Gl~~~g---~~-~-~pl~-gaD--iv~~S~hK~L~--Gp~GG~I~~ 326 (358)
+|. ++...+ .. + ..+. ..| +++.|+||+++ |.|.|++++
T Consensus 224 ~y~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~ 272 (412)
T 1ajs_A 224 AYQ-GFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTV 272 (412)
T ss_dssp SCT-TTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEE
T ss_pred ccc-cccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEEEEE
Confidence 976 333322 11 1 1121 223 88999999874 556699988
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.8e-13 Score=129.71 Aligned_cols=159 Identities=12% Similarity=-0.035 Sum_probs=109.2
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCH-HHH--HHHHHHhcc--C----------CCEEEecCCCCCcccccccccchhcc
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGS-PAN--FEVYTAILK--P----------HDRIMGLDLPHGGHLSHGFMTPKRRV 217 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt-~A~--~~a~~all~--p----------GD~Vl~~~~~~ggh~s~~~~~~~~~~ 217 (358)
.++.++++++++++ +|.+++|+ +++ ..++.++++ | ||+|++.++.|.++.. .+
T Consensus 83 lr~~ia~~~~~~~~----~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~--------~~ 150 (427)
T 3ppl_A 83 IRQIWADLLGVPVE----QVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFS--------IT 150 (427)
T ss_dssp HHHHHHHHHTSCGG----GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH--------HH
T ss_pred HHHHHHHHhCCCcc----eEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHH--------HH
Confidence 34557788898864 35556555 577 477888877 6 9999999886655422 23
Q ss_pred ccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEc-CCCC--CCCCCHH---HHHHHH-HHcCCEEEEeccccc
Q 018300 218 SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG-ASAY--PRDFDYP---RMRQIA-DAVGALLMMDMAHIS 290 (358)
Q Consensus 218 ~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~-~s~~--~~~~dl~---~I~~ia-~e~g~~livD~Ah~~ 290 (358)
...|. ++++++++++ + +|+++|++.++..++|+|++. .+++ |...+.+ +|.++| +++|+++++|++|..
T Consensus 151 ~~~g~--~~~~v~~~~~-g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~ 226 (427)
T 3ppl_A 151 ERFGF--EMISVPMNED-G-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAV 226 (427)
T ss_dssp HHTTC--EEEEEEEETT-E-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTT
T ss_pred HHcCC--EEEEeCCCCC-C-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcc
Confidence 45565 4555556643 3 999999998854578888875 3444 4567766 888888 999999999999873
Q ss_pred cccccCCccCC-----------CCCCcEEEEcCcCcC-ccCcEEEEEEeC
Q 018300 291 GLVAASVVADP-----------FKYCDVVTTTTHKSL-RGPRGGMIFFKK 328 (358)
Q Consensus 291 Gl~~~g~~~~p-----------l~gaDiv~~S~hK~L-~Gp~GG~I~~~~ 328 (358)
+.+.+..+.+ ..+.++++.|++|++ +|.|.|+++.++
T Consensus 227 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~ 275 (427)
T 3ppl_A 227 -HTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSA 275 (427)
T ss_dssp -CBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCH
T ss_pred -cccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCH
Confidence 2222211111 114568899999984 567889999876
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-13 Score=131.17 Aligned_cols=190 Identities=15% Similarity=0.145 Sum_probs=118.3
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHc---C---CCCCCCcceEE--eCCCHHHHHHH
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF---N---LDENKWGVNVQ--PLSGSPANFEV 184 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lf---g---~~~~~~~v~V~--~~SGt~A~~~a 184 (358)
++++.|.+++...+.+....+|.. ..|. .++++. +++++ + +++++ + ++ +.+|++|+..+
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~~y~~---~~g~---~~lr~~----la~~~~~~~~~~~~~~~--v-~~~~~~g~~~a~~~~ 110 (396)
T 2q7w_A 44 PVLTSVKKAEQYLLENETTKNYLG---IDGI---PEFGRC----TQELLFGKGSALINDKR--A-RTAQTPGGTGALRVA 110 (396)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCCCC---TTCC---HHHHHH----HHHHHHCTTCHHHHTTC--E-EEEEESHHHHHHHHH
T ss_pred cCcHHHHHHHHhhcCcccccCCCC---CCCC---HHHHHH----HHHHHhcCCCCcccccc--E-EEEecccchhhHHHH
Confidence 467999999987654322223321 1122 244444 44444 2 12321 2 22 66777899998
Q ss_pred HHHh--ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC-CCCCCCHHHHHHHhhhc--CCeEEEEcC
Q 018300 185 YTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILF--RPKLIIAGA 259 (358)
Q Consensus 185 ~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~iD~d~le~~i~~~--~~klIi~~~ 259 (358)
+.++ +.|||+|++.++.|.++.. .+...|..+ +.+++++ +++.+|++++++.+... +++++++..
T Consensus 111 ~~~~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~~~--~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~ 180 (396)
T 2q7w_A 111 ADFLAKNTSVKRVWVSNPSWPNHKS--------VFNSAGLEV--REYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGC 180 (396)
T ss_dssp HHHHHHHSCCCEEEEEESCCTHHHH--------HHHHTTCEE--EEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECS
T ss_pred HHHHHHhCCCCEEEEcCCCchhHHH--------HHHHcCCce--EEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCC
Confidence 8765 5799999999887665422 233456543 4444432 35678999999988653 356677666
Q ss_pred CCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccC--Cc-c-CCCC--C-CcEEEEcCcCcCc--cCcEEEEE
Q 018300 260 SAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAAS--VV-A-DPFK--Y-CDVVTTTTHKSLR--GPRGGMIF 325 (358)
Q Consensus 260 s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g--~~-~-~pl~--g-aDiv~~S~hK~L~--Gp~GG~I~ 325 (358)
+++| ...+ +++|.++|+++|+++++|++|.. +..++ .. + ..++ + .++++.|+||+++ |.|.|+++
T Consensus 181 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~ 259 (396)
T 2q7w_A 181 CHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQG-FARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACT 259 (396)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTT-SSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEeccccc-ccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEE
Confidence 6654 4444 67899999999999999999873 22221 11 1 1122 2 3477999999974 66679988
Q ss_pred E
Q 018300 326 F 326 (358)
Q Consensus 326 ~ 326 (358)
.
T Consensus 260 ~ 260 (396)
T 2q7w_A 260 L 260 (396)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=135.61 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEeCCC-HHHHHHHHHHh-ccCCCEEEecCCCCCcccccccccchhccccCCceEE
Q 018300 148 ELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE 225 (358)
Q Consensus 148 ~lE~~~~~~la~lfg~~~~~~~v~V~~~SG-t~A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~ 225 (358)
++++.+++++++++|++.+ ++.+++| |.++.+++.++ +++||+|+++++.|.++... + .......|..
T Consensus 108 ~~~~~~~~~la~~~g~~~~----~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~-~---~~~a~~~G~~-- 177 (438)
T 1wyu_A 108 QATFEYQTMIAELAGLEIA----NASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAV-L---RAYLEAVGAK-- 177 (438)
T ss_dssp HHHHHHHHHHHHHHTSSEE----CSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHH-H---HHHHHHTTCE--
T ss_pred HHHHHHHHHHHHHhCCCcc----ceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHH-H---HHHHHHCCCE--
Confidence 4555678899999999863 3334444 43445555553 68999999998766554211 0 0011235654
Q ss_pred EEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-CCCCCCHHHHHHHHHHcCCEEEEecc-ccccccccCCccCCCC
Q 018300 226 SMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMA-HISGLVAASVVADPFK 303 (358)
Q Consensus 226 ~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-~~~~~dl~~I~~ia~e~g~~livD~A-h~~Gl~~~g~~~~pl~ 303 (358)
++.++. +++.+|+++ +.. ++++|++..++ +|...|+++|.++|+++|+++++|.. ++.|.. ..+-+
T Consensus 178 v~~v~~--~~~~~d~~~----i~~-~t~~v~i~~pn~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~-----~~~~~ 245 (438)
T 1wyu_A 178 LLTLPL--EGGRTPLPE----VGE-EVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVL-----KPPGA 245 (438)
T ss_dssp EEEECC--BTTBCCCCC----CCT-TEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTB-----CCHHH
T ss_pred EEEEcC--cCCccCHHH----hCC-CeEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechhhccCc-----CCCcc
Confidence 444444 246778776 443 68888776653 56788999999999999999998865 655542 12222
Q ss_pred -CCcEEEEcCcC-----cCccCcEEEEEEeCC
Q 018300 304 -YCDVVTTTTHK-----SLRGPRGGMIFFKKD 329 (358)
Q Consensus 304 -gaDiv~~S~hK-----~L~Gp~GG~I~~~~~ 329 (358)
++|++++|+|| +++||++|+++++++
T Consensus 246 ~g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~ 277 (438)
T 1wyu_A 246 YGADIAVGDGQSLGLPMGFGGPHFGFLATKKA 277 (438)
T ss_dssp HTCSEEEEECTTTTCCCGGGCSCCEEEEECGG
T ss_pred CCCCEEEECCcccCCCccCCCCCeeEEEEcHH
Confidence 79999999887 688997799999874
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-13 Score=129.83 Aligned_cols=220 Identities=13% Similarity=0.133 Sum_probs=126.1
Q ss_pred cccccccCh-HHHHHHHHHHHHh------hhcccccccCC--CCcHHHHHHHhhhhhccc----CCCCCCCcCCCCcHHH
Q 018300 80 DYSLGEADP-EVCEIITKEKERQ------FKSLELIASEN--FTSRAVMEAVGSCLTNKY----SEGLPGKRYYGGNEYI 146 (358)
Q Consensus 80 ~~~l~~~d~-~~~~~i~~e~~~~------~~~i~lias~n--~~s~~V~~al~~~l~~~~----~~G~pg~r~~~G~~~~ 146 (358)
+.++.++++ +.|+.+.+..... ..-+++-..++ .+++.|++++...+.... ..+|+. ..|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~---~~g~--- 77 (400)
T 3asa_A 4 NPHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGP---DFGL--- 77 (400)
T ss_dssp CHHHHTCCCCCHHHHHHHHHHHHHHHCTTSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCC---TTCC---
T ss_pred chhhhccCCcccHHHHHHHHHHhhhhcCCCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCC---CCCC---
Confidence 344555544 4444443333321 13345544433 468899999987765321 112321 1122
Q ss_pred HHHHHHHHHHHHHH--cC-CCCCCCcceEEeCCC-HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCc
Q 018300 147 DELETLCQKRALAA--FN-LDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (358)
Q Consensus 147 ~~lE~~~~~~la~l--fg-~~~~~~~v~V~~~SG-t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (358)
.+++ +.++++ +| ++++ +|.+++| ++++..+ ..+++|||+|++.++.|.++.. .+...|.
T Consensus 78 ~~lr----~~la~~l~~g~~~~~----~v~~~~G~~~al~~~-~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~ 140 (400)
T 3asa_A 78 PALR----QKLSEDFYRGFVDAK----EIFISDGAKVDLFRL-LSFFGPNQTVAIQDPSYPAYLD--------IARLTGA 140 (400)
T ss_dssp HHHH----HHHHHTTSTTSSCGG----GEEEESCHHHHHHHH-HHHHCSSCEEEEEESCCHHHHH--------HHHHTTC
T ss_pred HHHH----HHHHHHHHcCCCCHH----HEEEccChHHHHHHH-HHHcCCCCEEEECCCCcHHHHH--------HHHHcCC
Confidence 2344 446666 57 5543 3555555 5577765 4567899999998876655421 2234565
Q ss_pred eEEEEeceecCCCC-CCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccC
Q 018300 223 YFESMPYRLDESTG-LVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAAS 296 (358)
Q Consensus 223 ~~~~~~~~~~~~~~-~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g 296 (358)
. .+.+++++++++ ..|++ + + .++++|++..+++| ...+ +++|.++|+++|+++++|++|. ++...+
T Consensus 141 ~-~~~~~~~~~~~~~~~~l~---~-~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~ 212 (400)
T 3asa_A 141 K-EIIALPCLQENAFFPEFP---E-D--THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYS-TFISDP 212 (400)
T ss_dssp S-EEEEEECCGGGTTCCCCC---T-T--CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTG-GGCCCT
T ss_pred c-ceEecccchhcCcccChh---h-c--cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhh-hhhcCC
Confidence 3 033444443222 33432 1 1 36888887656654 4555 6678899999999999999987 233333
Q ss_pred CccCCC---CC---CcEEEEcCcCcC--ccCcEEEEEEeCCC
Q 018300 297 VVADPF---KY---CDVVTTTTHKSL--RGPRGGMIFFKKDP 330 (358)
Q Consensus 297 ~~~~pl---~g---aDiv~~S~hK~L--~Gp~GG~I~~~~~~ 330 (358)
..+.++ ++ .++++.|++|++ +|.|.|+++++++.
T Consensus 213 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~ 254 (400)
T 3asa_A 213 SLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQEL 254 (400)
T ss_dssp TSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTC
T ss_pred CCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhh
Confidence 222122 21 348899999997 56677999988763
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6e-13 Score=132.30 Aligned_cols=185 Identities=14% Similarity=0.066 Sum_probs=116.3
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc----
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all---- 189 (358)
.+|.|.+++.+.+... . +....| ..+...+ .++++++++|.+. .++++||++|+..++.++.
T Consensus 93 ~~p~v~~Ai~~~~~~~-~--~~~~~~--~~~~~~~----l~~~la~~~g~~~-----v~~~~sGseA~~~al~~~~~~~~ 158 (439)
T 2oat_A 93 CHPKIVNALKSQVDKL-T--LTSRAF--YNNVLGE----YEEYITKLFNYHK-----VLPMNTGVEAGETACKLARKWGY 158 (439)
T ss_dssp TCHHHHHHHHHHHTTC-S--CCCTTS--EESSHHH----HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-C--cccCcc--CCHHHHH----HHHHHHHhcCCCE-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 6899999998876542 1 111112 1222233 3456778888543 3567789999999998764
Q ss_pred -----cCC-CEEEecCCCCCcccccccccchhccccCCc----------eEEEEeceecCCCCCCCHHHHHHHhhhcCCe
Q 018300 190 -----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI----------YFESMPYRLDESTGLVDYDMLEKTAILFRPK 253 (358)
Q Consensus 190 -----~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~----------~~~~~~~~~~~~~~~iD~d~le~~i~~~~~k 253 (358)
+|| |+|++.++.+.|.... .+...+. ..++..++ ..|+++|++.++..+++
T Consensus 159 ~~~g~~~g~~~vi~~~~~yhg~~~~-------~~~~~g~~~~~~~~~p~~~~v~~~~------~~d~~~le~~l~~~~~~ 225 (439)
T 2oat_A 159 TVKGIQKYKAKIVFAAGNFWGRTLS-------AISSSTDPTSYDGFGPFMPGFDIIP------YNDLPALERALQDPNVA 225 (439)
T ss_dssp HTTCCCTTCCEEEEETTCCCCSSHH-------HHTTCCCHHHHTTSCSCCTTEEEEC------SSCHHHHHHHTTSTTEE
T ss_pred hccCCCCCCCeEEEEcCCCCCCCHh-------HhhcCCChhcccCCCCCCCCeEEeC------CCCHHHHHHHhCCCCEE
Confidence 467 8999988655443210 1112220 00112222 13899999988534678
Q ss_pred EEEEcCCC--CCCCC----CHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCcc--CcEE
Q 018300 254 LIIAGASA--YPRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG--PRGG 322 (358)
Q Consensus 254 lIi~~~s~--~~~~~----dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~G--p~GG 322 (358)
+|++++.+ .|... ++++|.++|+++|++||+|++|. |+...|... ..++ ..|++ |++|+|+| .++|
T Consensus 226 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~G~~~~G 302 (439)
T 2oat_A 226 AFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT-GLARTGRWLAVDYENVRPDIV--LLGKALSGGLYPVS 302 (439)
T ss_dssp EEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCE
T ss_pred EEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCccCCcchhHHHhCCCCcEE--EecccccCCCCCeE
Confidence 88887543 34444 79999999999999999999994 654333211 1122 46877 55699965 4789
Q ss_pred EEEEeC
Q 018300 323 MIFFKK 328 (358)
Q Consensus 323 ~I~~~~ 328 (358)
++++++
T Consensus 303 ~v~~~~ 308 (439)
T 2oat_A 303 AVLCDD 308 (439)
T ss_dssp EEEECH
T ss_pred EEEECH
Confidence 999986
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-13 Score=130.00 Aligned_cols=190 Identities=16% Similarity=0.191 Sum_probs=117.9
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHc-CC--CCCCCcceEE--eCCCHHHHHHHHHH
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NL--DENKWGVNVQ--PLSGSPANFEVYTA 187 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lf-g~--~~~~~~v~V~--~~SGt~A~~~a~~a 187 (358)
++++.|.+++...+......+|+. ..|. .++++. +++++ +. ++++ .++ +.+|+.|+..++.+
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~~y~~---~~g~---~~lr~~----la~~~~~~~~~~~~---v~~~~~~g~~~a~~~~~~~ 110 (394)
T 2ay1_A 44 PIMRAVHAAEQRMLETETTKTYAG---LSGE---PEFQKA----MGELILGDGLKSET---TATLATVGGTGALRQALEL 110 (394)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCCCC---SSCC---HHHHHH----HHHHHHGGGCCGGG---EEEEEEEHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhcCCcccCCCCC---CCCc---HHHHHH----HHHHHhCCCCCccc---EEEEecCCchhHHHHHHHH
Confidence 457999999987654322223432 1222 234444 44444 44 3331 233 56778899999877
Q ss_pred hc--cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC-CCCCCCHHHHHHHhhhc--CCeEEEEcCCCC
Q 018300 188 IL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILF--RPKLIIAGASAY 262 (358)
Q Consensus 188 ll--~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~iD~d~le~~i~~~--~~klIi~~~s~~ 262 (358)
+. .|||+|++.++.|.++.. .+...|..+..+ ++++ +++.+|++++++.++.. +++++++..+++
T Consensus 111 ~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~~~~~~--~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~n 180 (394)
T 2ay1_A 111 ARMANPDLRVFVSDPTWPNHVS--------IMNFMGLPVQTY--RYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHN 180 (394)
T ss_dssp HHHHCTTCCEEEEESCCHHHHH--------HHHHHTCCEEEE--ECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCT
T ss_pred HHhcCCCCEEEEcCCCChhHHH--------HHHHcCCceEEE--ecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 64 499999998876655421 223445544434 4432 34678999999988653 245666666665
Q ss_pred C--CCCC---HHHHHHHHHHcCCEEEEeccccccccccC---Ccc-CCCC--CC-cEEEEcCcCcC--ccCcEEEEEE
Q 018300 263 P--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAAS---VVA-DPFK--YC-DVVTTTTHKSL--RGPRGGMIFF 326 (358)
Q Consensus 263 ~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g---~~~-~pl~--ga-Div~~S~hK~L--~Gp~GG~I~~ 326 (358)
| ...+ +++|.++|+++|+++++|++|+.. ..++ ..+ ..+. +. .+++.|+||++ +|.|.|++++
T Consensus 181 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~ 257 (394)
T 2ay1_A 181 PTGANLTLDQWAEIASILEKTGALPLIDLAYQGF-GDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLA 257 (394)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTS-SSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEecCcccc-ccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEE
Confidence 4 4454 668899999999999999998732 2211 001 1122 32 36788999997 4667799987
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.46 E-value=9.9e-13 Score=130.39 Aligned_cols=185 Identities=14% Similarity=0.097 Sum_probs=113.0
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc----
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all---- 189 (358)
.+|.|.+++...+... . +.. +.+ ..+...+ .++++++++|.+. .++++||++|+..++.++.
T Consensus 82 ~~p~v~~ai~~~~~~~-~--~~~-~~~-~~~~~~~----l~~~la~~~g~~~-----v~~~~sGseA~~~al~~a~~~~~ 147 (433)
T 1z7d_A 82 CHPNILNAMINQAKNL-T--ICS-RAF-FSVPLGI----CERYLTNLLGYDK-----VLMMNTGAEANETAYKLCRKWGY 147 (433)
T ss_dssp TCHHHHHHHHHHHTTC-S--CCC-TTS-EEHHHHH----HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-C--Ccc-CCc-CCHHHHH----HHHHHHhhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 6899999998876432 1 111 112 2232233 4456788888543 3567789999999988753
Q ss_pred -----cCC-CEEEecCCCCCcccccccccchhccccCCce----------EEEEeceecCCCCCCCHHHHHHHhhhcCCe
Q 018300 190 -----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY----------FESMPYRLDESTGLVDYDMLEKTAILFRPK 253 (358)
Q Consensus 190 -----~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~iD~d~le~~i~~~~~k 253 (358)
+|| |+|++.++.+.|.... .+...+.. .++..++ ..|+++|++.++..+++
T Consensus 148 ~~~g~~~gr~~vi~~~~~yhg~~~~-------~~~~~g~~~~~~~~~p~~~~v~~~~------~~d~~~le~~l~~~~~~ 214 (433)
T 1z7d_A 148 EVKKIPENMAKIVVCKNNFSGRTLG-------CISASTTKKCTSNFGPFAPQFSKVP------YDDLEALEEELKDPNVC 214 (433)
T ss_dssp HTSCCCTTCCEEEEETTC---------------------------------CEEEEC------TTCHHHHHHHHTSTTEE
T ss_pred hccCCCCCCCeEEEEeCCcCCcchh-------hhcccCCccccccCCCCCCCeEEeC------CCCHHHHHHHhCCCCEE
Confidence 478 9999988765443211 11122210 0112211 23899999988434678
Q ss_pred EEEEcCCC--CCCCC----CHHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcCcCcCcc--CcEE
Q 018300 254 LIIAGASA--YPRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG--PRGG 322 (358)
Q Consensus 254 lIi~~~s~--~~~~~----dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~hK~L~G--p~GG 322 (358)
+|++++.+ .|... ++++|.++|+++|++||+|++|+ |+...|.. . ..++ ..|++ |++|+|+| .++|
T Consensus 215 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~~G 291 (433)
T 1z7d_A 215 AFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHYPIS 291 (433)
T ss_dssp EEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCE
T ss_pred EEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-CCCcCCcchhhHhcCCCCCEE--EECccccCCCCCeE
Confidence 88887543 34433 79999999999999999999996 65333321 1 1122 56887 45699864 4789
Q ss_pred EEEEeC
Q 018300 323 MIFFKK 328 (358)
Q Consensus 323 ~I~~~~ 328 (358)
++++++
T Consensus 292 ~v~~~~ 297 (433)
T 1z7d_A 292 AVLAND 297 (433)
T ss_dssp EEEECH
T ss_pred EEEECH
Confidence 999886
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.6e-13 Score=125.84 Aligned_cols=194 Identities=14% Similarity=0.072 Sum_probs=125.4
Q ss_pred ccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC---CCCCCCcceEEeCC-CH
Q 018300 105 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN---LDENKWGVNVQPLS-GS 178 (358)
Q Consensus 105 i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg---~~~~~~~v~V~~~S-Gt 178 (358)
++|-..++ .+++.|++++...+......+|+.. +. .+ .++.++++++ ++++ +|.+++ |+
T Consensus 22 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~----~~---~~----lr~~la~~~~~~~~~~~----~v~~~~G~~ 86 (335)
T 1uu1_A 22 TYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDS----PD---EE----LIEKILSYLDTDFLSKN----NVSVGNGAD 86 (335)
T ss_dssp EEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCCS----SC---HH----HHHHHHHHHTCSSCCGG----GEEEESSHH
T ss_pred eECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC----ch---HH----HHHHHHHHcCCCCCCHH----HEEEcCChH
Confidence 45544444 3589999999877632222334321 11 23 3455788888 6653 344454 56
Q ss_pred HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEc
Q 018300 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258 (358)
Q Consensus 179 ~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~ 258 (358)
+|+..++.++ ||+|++. +.|.++.. .+...|. +++.+++++ ++.+|++++ .++++|++.
T Consensus 87 ~al~~~~~~~---gd~Vl~~-p~y~~~~~--------~~~~~g~--~~~~v~~~~-~~~~d~~~l------~~~~~v~l~ 145 (335)
T 1uu1_A 87 EIIYVMMLMF---DRSVFFP-PTYSCYRI--------FAKAVGA--KFLEVPLTK-DLRIPEVNV------GEGDVVFIP 145 (335)
T ss_dssp HHHHHHHHHS---SEEEECS-SSCHHHHH--------HHHHHTC--EEEECCCCT-TSCCCCCCC------CTTEEEEEE
T ss_pred HHHHHHHHHh---CCcEEEC-CCcHHHHH--------HHHHcCC--eEEEeccCC-CCCCCHHHc------CCCCEEEEe
Confidence 7999988887 9999998 86655421 2234455 445555653 346787766 368888865
Q ss_pred CCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcC--ccCcEEEEEEeCCCCc
Q 018300 259 ASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDPVL 332 (358)
Q Consensus 259 ~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~~ 332 (358)
.+++ |...+.+++.++++.+| ++++|++|+. +...... ..++ +.+++++|++|++ +|.|.|++++++
T Consensus 146 ~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~-~~~~~~~-~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~---- 218 (335)
T 1uu1_A 146 NPNNPTGHVFEREEIERILKTGA-FVALDEAYYE-FHGESYV-DFLKKYENLAVIRTFSKAFSLAAQRVGYVVASE---- 218 (335)
T ss_dssp SSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHH-HHCCCCG-GGGGTCSSEEEEEESTTTTTCGGGCCEEEEECH----
T ss_pred CCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchh-hcchhHH-HHhhhCCCEEEEecchhhcCCcccCeEEEEeCH----
Confidence 5554 56889999999999999 9999999873 2221111 1122 4678999999997 466779999965
Q ss_pred hhHHHHHHhhc
Q 018300 333 GVELESAINNA 343 (358)
Q Consensus 333 ~~~~~~~i~~~ 343 (358)
++.+++...
T Consensus 219 --~~~~~l~~~ 227 (335)
T 1uu1_A 219 --KFIDAYNRV 227 (335)
T ss_dssp --HHHHHHHHH
T ss_pred --HHHHHHHHh
Confidence 566666554
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=125.41 Aligned_cols=197 Identities=11% Similarity=0.063 Sum_probs=127.9
Q ss_pred hcccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHH
Q 018300 103 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (358)
Q Consensus 103 ~~i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A 180 (358)
.-+++-..++ .+++.|++++...+... .+|+... + .+ .++++++++|+++++ .+++++|++|
T Consensus 16 ~~id~~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~~---~----~~----lr~~la~~~~~~~~~---i~~t~g~~~a 79 (350)
T 3fkd_A 16 EIVNFSTTVWTDGDKDHLEKHLVENLNCI--RHYPEPD---A----GT----LRQMLAKRNSVDNNA---ILVTNGPTAA 79 (350)
T ss_dssp CCEECSCCSCCCSCCHHHHHHHHHTGGGG--GSCCCTT---C----HH----HHHHHHHHTTCCGGG---EEEESHHHHH
T ss_pred cEEEccCCCCCCCCCHHHHHHHHHhHhHH--hcCCCCc---H----HH----HHHHHHHHhCcCHHH---EEEcCCHHHH
Confidence 4455544444 35899999998776322 2454311 1 12 455688899987642 2444556679
Q ss_pred HHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee-cCCCCCCCHHHHHHHhhhcCCeEEEEcC
Q 018300 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAILFRPKLIIAGA 259 (358)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~iD~d~le~~i~~~~~klIi~~~ 259 (358)
+..++.++. ||+|++.++.|.++. ..+...|. +++++++ ++ .+.+++ .++|+|++..
T Consensus 80 l~~~~~~l~--gd~Vi~~~p~~~~~~--------~~~~~~g~--~~~~v~~~~~-~~~~~~---------~~~~~v~i~~ 137 (350)
T 3fkd_A 80 FYQIAQAFR--GSRSLIAIPSFAEYE--------DACRMYEH--EVCFYPSNED-IGEADF---------SNMDFCWLCN 137 (350)
T ss_dssp HHHHHHHTT--TCEEEEEESCCHHHH--------HHHHHTTC--EEEEEETTSC-GGGSCC---------TTCSEEEEES
T ss_pred HHHHHHHHC--CCEEEEeCCCcHHHH--------HHHHHcCC--eEEEEecCCc-cccCcc---------CCCCEEEEeC
Confidence 999998887 999999887665432 12345565 4455555 42 223333 3688887766
Q ss_pred CCC--CCCCCHHHHHHHHHHcC-CEEEEeccccccccccCCcc-CCCC--CCcEEEEcCcCcC--ccCcEEEEEEeCCCC
Q 018300 260 SAY--PRDFDYPRMRQIADAVG-ALLMMDMAHISGLVAASVVA-DPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDPV 331 (358)
Q Consensus 260 s~~--~~~~dl~~I~~ia~e~g-~~livD~Ah~~Gl~~~g~~~-~pl~--gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~ 331 (358)
+++ |...+.+++.++++.++ .++++|++|+. +...+... ..++ +.++++.|++|++ +|.+.|++++++
T Consensus 138 p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~--- 213 (350)
T 3fkd_A 138 PNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVS-FTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANK--- 213 (350)
T ss_dssp SCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTT-SCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCH---
T ss_pred CCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhh-hccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCH---
Confidence 554 56889999999999886 79999999863 33332211 1122 4558899999986 467789999855
Q ss_pred chhHHHHHHhhcc
Q 018300 332 LGVELESAINNAV 344 (358)
Q Consensus 332 ~~~~~~~~i~~~~ 344 (358)
++.+++....
T Consensus 214 ---~~~~~~~~~~ 223 (350)
T 3fkd_A 214 ---DFMKRVAAFS 223 (350)
T ss_dssp ---HHHHHHHTTC
T ss_pred ---HHHHHHHHhC
Confidence 6777776643
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-12 Score=126.74 Aligned_cols=195 Identities=15% Similarity=-0.003 Sum_probs=117.6
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHH---Hhc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT---AIL 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~---all 189 (358)
+.++.|++++...+... . +....|+ ..+.. ...++.++++++.+..+ ..+++++|++|+..++. ++.
T Consensus 57 ~~~~~v~~a~~~~~~~~-~--~~~~~~~-~~~~~----~~l~~~la~~~~~~~~~--~v~~~~g~~~a~~~~~~~a~~~~ 126 (426)
T 1sff_A 57 HLHPKVVAAVEAQLKKL-S--HTCFQVL-AYEPY----LELCEIMNQKVPGDFAK--KTLLVTTGSEAVENAVKIARAAT 126 (426)
T ss_dssp BTCHHHHHHHHHHTTTC-S--CCCTTTE-ECHHH----HHHHHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-C--Ccccccc-CCHHH----HHHHHHHHHhCCccccc--EEEEeCchHHHHHHHHHHHHHhh
Confidence 36899999998776432 1 1111122 12222 22456688888322211 23455677889999987 667
Q ss_pred cCCCEEEecCCCCCcccccccccchhccccCCc-------------eEEEEeceecC--CCCCCCHHHHHHHhhh----c
Q 018300 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDE--STGLVDYDMLEKTAIL----F 250 (358)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-------------~~~~~~~~~~~--~~~~iD~d~le~~i~~----~ 250 (358)
++| +|++.++.+.+.... .+...+. .+..++++.+. .++.+|+++|++.++. .
T Consensus 127 ~~~-~vi~~~p~y~~~~~~-------~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 198 (426)
T 1sff_A 127 KRS-GTIAFSGAYHGRTHY-------TLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPE 198 (426)
T ss_dssp TCC-EEEEETTCCCCSSHH-------HHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGG
T ss_pred CCC-eEEEECCCcCCCchH-------hhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCC
Confidence 777 788877765443210 1111121 13334433211 1234789999998863 3
Q ss_pred CCeEEEEcC--CCCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCcc-Cc
Q 018300 251 RPKLIIAGA--SAYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PR 320 (358)
Q Consensus 251 ~~klIi~~~--s~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~G-p~ 320 (358)
++++|++++ ++.|...+ +++|.++|+++|++|++|++|+ |+...+... ...+ ..|++ |++|+|++ .+
T Consensus 199 ~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~di~--s~sK~~~~Glr 275 (426)
T 1sff_A 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-GAGRTGTLFAMEQMGVAPDLT--TFAKSIAGGFP 275 (426)
T ss_dssp GEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTSCCSEE--EECGGGGTSSC
T ss_pred ceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-ccCcccchhhhhhcCCCCCEE--EEcccccCCCc
Confidence 577888854 34565666 9999999999999999999998 654333211 1122 46776 55699853 34
Q ss_pred EEEEEEeC
Q 018300 321 GGMIFFKK 328 (358)
Q Consensus 321 GG~I~~~~ 328 (358)
.|++++++
T Consensus 276 iG~~~~~~ 283 (426)
T 1sff_A 276 LAGVTGRA 283 (426)
T ss_dssp CEEEEEEH
T ss_pred eEEEEEcH
Confidence 49999987
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-12 Score=126.85 Aligned_cols=200 Identities=18% Similarity=0.073 Sum_probs=123.1
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcC-CCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc--
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRY-YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-- 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~-~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~-- 190 (358)
.+|.|++++...+.... ..++ .+..+.. ...+++++++++.+.+ ..++++||++|+..++.++..
T Consensus 67 ~~~~v~~a~~~~~~~~~-----~~~~~~~~~~~~----~~l~~~la~~~~~~~~---~v~~~~ggsea~~~al~~~~~~~ 134 (449)
T 3a8u_X 67 TRKEIQEAVAKQLSTLD-----YSPGFQYGHPLS----FQLAEKITDLTPGNLN---HVFFTDSGSECALTAVKMVRAYW 134 (449)
T ss_dssp SCHHHHHHHHHHTTTCS-----CCCSSSCCCHHH----HHHHHHHHTTSSTTEE---EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCC-----CccccccCCHHH----HHHHHHHHHhCCCCCC---EEEEcCcHHHHHHHHHHHHHHHH
Confidence 37999999987765321 1111 1122322 2345668888876553 235567888999999987753
Q ss_pred ------CCCEEEecCCCCCcccccccccchhccccCC------------ceEEEEeceecCCC--CCCC--------HHH
Q 018300 191 ------PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDEST--GLVD--------YDM 242 (358)
Q Consensus 191 ------pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~--~~iD--------~d~ 242 (358)
+||+|++.++.+.+.... .+...+ ..+..++++..... ..+| +++
T Consensus 135 ~~~g~~~~~~vi~~~~~yhg~~~~-------~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~ 207 (449)
T 3a8u_X 135 RLKGQATKTKMIGRARGYHGVNIA-------GTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADE 207 (449)
T ss_dssp HHTTCTTCCEEEEETTCCCCSSHH-------HHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCcCCCChh-------hhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHH
Confidence 789999988766543210 111111 11334443221000 1246 999
Q ss_pred HHHHhhh---cCCeEEEEcCCC--CCCCCC----HHHHHHHHHHcCCEEEEecccc-ccccccCCc-c-CCCC-CCcEEE
Q 018300 243 LEKTAIL---FRPKLIIAGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHI-SGLVAASVV-A-DPFK-YCDVVT 309 (358)
Q Consensus 243 le~~i~~---~~~klIi~~~s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~-~Gl~~~g~~-~-~pl~-gaDiv~ 309 (358)
|++.++. .++++|++++.+ .|...+ +++|.++|+++|++||+|++|+ +|.. |.. . ..++ ..|+++
T Consensus 208 le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~--g~~~~~~~~~~~~di~s 285 (449)
T 3a8u_X 208 LLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRT--GSMFGADSFGVTPDLMC 285 (449)
T ss_dssp HHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT--SSSSHHHHHTCCCSEEE
T ss_pred HHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc--CcchhhhhcCCCCCEEE
Confidence 9998864 256788887643 455677 9999999999999999999995 4422 211 1 1112 468774
Q ss_pred EcCcCcCcc--CcEEEEEEeCCCCchhHHHHHHhh
Q 018300 310 TTTHKSLRG--PRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 310 ~S~hK~L~G--p~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
++|+|+| .+.|++++++ ++.+.+..
T Consensus 286 --~sK~l~~G~~~~G~~~~~~------~~~~~l~~ 312 (449)
T 3a8u_X 286 --IAKQVTNGAIPMGAVIAST------EIYQTFMN 312 (449)
T ss_dssp --ECGGGGTTSSCCEEEEEEH------HHHHHHHT
T ss_pred --EcccccCCCCceEEEEECH------HHHHHhhc
Confidence 4599965 5678888876 56676655
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=126.95 Aligned_cols=185 Identities=15% Similarity=0.087 Sum_probs=116.9
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc---
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~--- 190 (358)
.+|.|++++.+.+.. +. +.+. .| ..+.. +..++++++++|.+. .++++||++|+..++.++..
T Consensus 57 ~~~~v~~a~~~~~~~-~~--~~~~-~~-~~~~~----~~l~~~la~~~g~~~-----v~~~~gg~~a~~~al~~~~~~~~ 122 (397)
T 2ord_A 57 SHPRLVEAIKDQAEK-LI--HCSN-LF-WNRPQ----MELAELLSKNTFGGK-----VFFANTGTEANEAAIKIARKYGK 122 (397)
T ss_dssp TCHHHHHHHHHHHHH-CS--CCCT-TS-EEHHH----HHHHHHHHHTTTSCE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-cc--cCcc-cc-CCHHH----HHHHHHHHHhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 589999999887654 22 1111 12 23322 334566888888532 35667889999999988753
Q ss_pred ---C-CCEEEecCCCCCcccccccccchhccccCCce-----E-----EEEeceecCCCCCCCHHHHHHHhhhcCCeEEE
Q 018300 191 ---P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----F-----ESMPYRLDESTGLVDYDMLEKTAILFRPKLII 256 (358)
Q Consensus 191 ---p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-----~-----~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi 256 (358)
+ +|+|++.++.+.+.... .+...|.. + .+..++. .|+++|++.++. ++++|+
T Consensus 123 ~~~~~~~~vi~~~~~yh~~~~~-------~~~~~g~~~~~~~~~p~~~~~~~~~~------~d~~~l~~~l~~-~~~~v~ 188 (397)
T 2ord_A 123 KKSEKKYRILSAHNSFHGRTLG-------SLTATGQPKYQKPFEPLVPGFEYFEF------NNVEDLRRKMSE-DVCAVF 188 (397)
T ss_dssp HHCTTCCEEEEEBTCCCCSSHH-------HHHHSBCHHHHGGGCSCCTTEEEECT------TCHHHHHHHCCT-TEEEEE
T ss_pred cCCCCCceEEEEcCCcCCCchh-------hhhccCChhhccccCCCCCCeeEecC------CCHHHHHHHhhc-CeEEEE
Confidence 5 47888877654332110 11222221 0 0222221 389999998864 789998
Q ss_pred EcCCCCC--C----CCCHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCc-cCcEEEEEE
Q 018300 257 AGASAYP--R----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIFF 326 (358)
Q Consensus 257 ~~~s~~~--~----~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~-Gp~GG~I~~ 326 (358)
+.+++++ . ..++++|.++|+++|++|++|++|+ |+...+... ..++ ..|++++ +|+|+ |.+.|++++
T Consensus 189 ~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~s~--sK~~~~G~r~G~~~~ 265 (397)
T 2ord_A 189 LEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQC-GMGRTGKLFAYQKYGVVPDVLTT--AKGLGGGVPIGAVIV 265 (397)
T ss_dssp ECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEEEE
T ss_pred EecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCccchhhhhhCCCCCeeee--ccccCCCcCeEEEEE
Confidence 8766554 3 2468999999999999999999996 654333211 0112 3787744 79996 456788888
Q ss_pred eCC
Q 018300 327 KKD 329 (358)
Q Consensus 327 ~~~ 329 (358)
+++
T Consensus 266 ~~~ 268 (397)
T 2ord_A 266 NER 268 (397)
T ss_dssp CST
T ss_pred chH
Confidence 775
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-12 Score=123.36 Aligned_cols=197 Identities=15% Similarity=0.123 Sum_probs=118.1
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc----
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all---- 189 (358)
.+|.|.+++...+.. ...++ .++ ..+. .+..++++++++|.+. .++++||++|+..++..+.
T Consensus 53 ~~p~v~~a~~~~~~~-~~~~~--~~~--~~~~----~~~l~~~la~~~~~~~-----v~~~~gg~ea~~~al~~~~~~~~ 118 (395)
T 3nx3_A 53 NHAKFNAKIKAQVDK-LLHTS--NLY--YNEN----IAAAAKNLAKASALER-----VFFTNSGTESIEGAMKTARKYAF 118 (395)
T ss_dssp SCHHHHHHHHHHHTT-CSCCC--TTS--BCHH----HHHHHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-ccccc--ccc--CCHH----HHHHHHHHHHhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 479999999877643 22222 111 2232 2334567888888432 3667789999999998764
Q ss_pred ---cCCCEEEecCCCCCcccccccc-cc---h-hccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC
Q 018300 190 ---KPHDRIMGLDLPHGGHLSHGFM-TP---K-RRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (358)
Q Consensus 190 ---~pGD~Vl~~~~~~ggh~s~~~~-~~---~-~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~ 261 (358)
.+||+|++.++.+.|....... +. . ......+. +...++ ..|+++|++.++ .++++|++.+.+
T Consensus 119 ~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~d~~~l~~~l~-~~~~~v~~~~~~ 189 (395)
T 3nx3_A 119 NKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLIS--GVKFAK------YNDISSVEKLVN-EKTCAIILESVQ 189 (395)
T ss_dssp HTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCS--CEEEEC------TTCHHHHHTTCC-TTEEEEEEESEE
T ss_pred ccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCC--CcEEeC------CCCHHHHHHhcc-CCeEEEEEeCcc
Confidence 4589999988766543210000 00 0 00000011 112211 237999999886 367788776533
Q ss_pred --CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcCcCcCc-cCcEEEEEEeCCCC
Q 018300 262 --YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPV 331 (358)
Q Consensus 262 --~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~hK~L~-Gp~GG~I~~~~~~~ 331 (358)
.|...+ +++|.++|++||++|++|++|+ |+...+.. . ...+ ..|++++| |++. |.+.|++++++
T Consensus 190 ~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-~~g~~g~~~~~~~~~~~~d~~t~s--K~~~~G~~~G~~~~~~--- 263 (395)
T 3nx3_A 190 GEGGINPANKDFYKALRKLCDEKDILLIADEIQC-GMGRSGKFFAYEHAQILPDIMTSA--KALGCGLSVGAFVINQ--- 263 (395)
T ss_dssp CTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGTTTSCCEEEEECH---
T ss_pred CCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCCcCCcchhHHhcCCCCCEEEec--ccccCCCceEEEEEch---
Confidence 233444 9999999999999999999987 33222211 1 1122 45777655 8874 55779998887
Q ss_pred chhHH-HHHHhh
Q 018300 332 LGVEL-ESAINN 342 (358)
Q Consensus 332 ~~~~~-~~~i~~ 342 (358)
++ .+.+..
T Consensus 264 ---~~~~~~~~~ 272 (395)
T 3nx3_A 264 ---KVASNSLEA 272 (395)
T ss_dssp ---HHHHHHSCT
T ss_pred ---hhhhhhcCC
Confidence 55 666644
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-12 Score=127.88 Aligned_cols=231 Identities=15% Similarity=0.152 Sum_probs=140.9
Q ss_pred cccccChH-HHHHHHHHHHHhhhccccccc-------CCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHH
Q 018300 82 SLGEADPE-VCEIITKEKERQFKSLELIAS-------ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 153 (358)
Q Consensus 82 ~l~~~d~~-~~~~i~~e~~~~~~~i~lias-------~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~ 153 (358)
.+...+|+ ++.+.++-+......+||--+ ..++.+.|++|....+.+....+|.. ..|.+ ++.+.+
T Consensus 23 ~v~~~p~d~i~~l~~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p---~~G~p---~lr~ai 96 (420)
T 4h51_A 23 KIQAQAPDVIFDLAKRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLP---ISGYQ---PFIDEA 96 (420)
T ss_dssp TCCCCCCCHHHHHHHHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCC---TTCCH---HHHHHH
T ss_pred CCCCCCCChHHHHHHHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCC---cCChH---HHHHHH
Confidence 35555443 666665544333345776522 23556899999876665555445654 34554 455544
Q ss_pred HHHHHHHcCCCCC-CCcceEEeCCCHHHHHHHHH----HhccCCCEEEecCCCCCcccccccccchhccccCCce-EEEE
Q 018300 154 QKRALAAFNLDEN-KWGVNVQPLSGSPANFEVYT----AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESM 227 (358)
Q Consensus 154 ~~~la~lfg~~~~-~~~v~V~~~SGt~A~~~a~~----all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~~ 227 (358)
.+. +||-... +....++..+||.|+..++. .+++|||+|++++|.+..|.. .+...|.. +...
T Consensus 97 a~~---~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~--------i~~~aG~~~V~~~ 165 (420)
T 4h51_A 97 VKI---IYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYG--------VVKAAGWKNICTY 165 (420)
T ss_dssp HHH---HHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHH--------HHHHTTCCCEEEE
T ss_pred HHH---hcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHH--------HHHHcCCeEEEee
Confidence 433 3454321 11123556778877765554 346799999999997776632 23445543 3333
Q ss_pred eceecCCCCCCCHHHHHHHhhhc--CCeEEEEcCCCCCC--CC---CHHHHHHHHHHcCCEEEEeccccccccccCCccC
Q 018300 228 PYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300 (358)
Q Consensus 228 ~~~~~~~~~~iD~d~le~~i~~~--~~klIi~~~s~~~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~ 300 (358)
++ .++++..+|.+.+.+.+... ++++++.+.++||+ .. ++++|.++|+++++++++|+++. |+.+++....
T Consensus 166 ~~-~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~-~~~~~~~~~~ 243 (420)
T 4h51_A 166 AY-YDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQ-GYASGSLDTD 243 (420)
T ss_dssp EC-EEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT-TTTTSCHHHH
T ss_pred cc-ccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhh-hhccCCcccc
Confidence 33 33356678999888776543 34566667777765 32 47889999999999999999954 6654432111
Q ss_pred CC------C-CC-cEEEEcCcCcC--ccCcEEEEEEeCCCC
Q 018300 301 PF------K-YC-DVVTTTTHKSL--RGPRGGMIFFKKDPV 331 (358)
Q Consensus 301 pl------~-ga-Div~~S~hK~L--~Gp~GG~I~~~~~~~ 331 (358)
++ + +. =+++.|++|++ .|+|.|+++...+.+
T Consensus 244 ~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~ 284 (420)
T 4h51_A 244 AYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDK 284 (420)
T ss_dssp THHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCH
T ss_pred hHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCH
Confidence 11 1 11 27788999975 799999998877643
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-12 Score=127.18 Aligned_cols=184 Identities=16% Similarity=0.124 Sum_probs=116.1
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc---
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~--- 190 (358)
.+|.|.+++.+.+.. +. +....| ..+. ....++++++++|.+. .++++||++|+..++.++..
T Consensus 74 ~~p~v~~ai~~~~~~-~~--~~~~~~--~~~~----~~~l~~~la~~~g~~~-----v~~~~ggteA~~~al~~~~~~~~ 139 (420)
T 2pb2_A 74 CHPALVEALKSQGET-LW--HTSNVF--TNEP----ALRLGRKLIDATFAER-----VLFMNSGTEANETAFKLARHYAC 139 (420)
T ss_dssp TCHHHHHHHHHHHTT-CC--CCCTTS--CCHH----HHHHHHHHHHHSSCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-cc--cccCcc--CCHH----HHHHHHHHHhhCCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 589999999877643 22 111112 2232 2335567888888543 35667889999999998765
Q ss_pred ----CCC-EEEecCCCCCcccccccccchhccccCCce-----E-----EEEeceecCCCCCCCHHHHHHHhhhcCCeEE
Q 018300 191 ----PHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----F-----ESMPYRLDESTGLVDYDMLEKTAILFRPKLI 255 (358)
Q Consensus 191 ----pGD-~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-----~-----~~~~~~~~~~~~~iD~d~le~~i~~~~~klI 255 (358)
+|+ +|++.++.+.+.... .....|.. + .+..++ ..|+++|++.+++ ++++|
T Consensus 140 ~~~~~g~~~vi~~~~~yh~~~~~-------~~~~~g~~~~~~~~~p~~~~~~~~~------~~d~~~le~~i~~-~~~~v 205 (420)
T 2pb2_A 140 VRHSPFKTKIIAFHNAFHGRSLF-------TVSVGGQPKYSDGFGPKPADIIHVP------FNDLHAVKAVMDD-HTCAV 205 (420)
T ss_dssp HHTCTTCCEEEEETTCCCCSSHH-------HHHHSSCHHHHTTSSSCCSCEEEEC------TTCHHHHHHHCCT-TEEEE
T ss_pred hccCCCCCEEEEEeCCcCCcCHH-------HHHhcCCccccccCCCCCCCeEEec------CCCHHHHHHHhcc-CceEE
Confidence 784 899888765443210 11122211 0 112211 1389999998864 78888
Q ss_pred EEcCCCC--CC----CCCHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCcc-CcEEEEE
Q 018300 256 IAGASAY--PR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PRGGMIF 325 (358)
Q Consensus 256 i~~~s~~--~~----~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~G-p~GG~I~ 325 (358)
++++.++ +. ..++++|.++|+++|++|++|++|. |+...|... ..++ ..|+++ ++|+|++ .+.|+++
T Consensus 206 i~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~-g~~~~g~~~~~~~~~~~~diit--~sK~l~~G~~iG~~~ 282 (420)
T 2pb2_A 206 VVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQC-GMGRTGDLFAYMHYGVTPDILT--SAKALGGGFPVSAML 282 (420)
T ss_dssp EECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEEE
T ss_pred EEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCc-CcccCCcHHHHHhcCCCCCeEE--ecccccCCCceEEEE
Confidence 8875433 22 2468999999999999999999994 654333211 1122 578875 5699853 4678888
Q ss_pred EeC
Q 018300 326 FKK 328 (358)
Q Consensus 326 ~~~ 328 (358)
+++
T Consensus 283 ~~~ 285 (420)
T 2pb2_A 283 TTQ 285 (420)
T ss_dssp ECH
T ss_pred EhH
Confidence 876
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.39 E-value=9.2e-12 Score=122.67 Aligned_cols=194 Identities=15% Similarity=0.088 Sum_probs=115.8
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc--C
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--P 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~--p 191 (358)
.+|.|.+++...+......+|+ .+. ....+++++++++ +.+ ..++++|||+|+..++..+.. +
T Consensus 72 ~~p~v~~a~~~~~~~~~~~~~~-------~~~----~~~l~~~la~~~~-~~~---~v~~~~sGsea~~~ai~~a~~~~~ 136 (434)
T 3l44_A 72 AHPHITKAITTAAENGVLYGTP-------TAL----EVKFAKMLKEAMP-ALD---KVRFVNSGTEAVMTTIRVARAYTG 136 (434)
T ss_dssp TCHHHHHHHHHHHHHCSCCSSC-------CHH----HHHHHHHHHHHCT-TCS---EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCcCCCCC-------CHH----HHHHHHHHHHhCC-CCC---EEEEeCchHHHHHHHHHHHHHhhC
Confidence 4899999998877543222222 222 2224456788886 332 245667899999999987654 7
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCC-------------CCCHHHHHHHhhh--cCCeEEE
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG-------------LVDYDMLEKTAIL--FRPKLII 256 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------~iD~d~le~~i~~--~~~klIi 256 (358)
+|+|++.++.+.|+... .....+.......++. ..+ ..|+++|++.++. .++++|+
T Consensus 137 ~~~vi~~~~~yhg~~~~-------~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi 207 (434)
T 3l44_A 137 RTKIMKFAGCYHGHSDL-------VLVAAGSGPSTLGTPD--SAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAIL 207 (434)
T ss_dssp CCEEEEETTCCCCSSGG-------GGBC-------CCCBS--STTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEE
T ss_pred CCEEEEEcCccCCCcHH-------HHhhcCCcccccCCCC--cCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEE
Confidence 89999988765443211 1111221110000000 001 1289999998864 2457788
Q ss_pred EcCCC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCc-cCcEEEEEE
Q 018300 257 AGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIFF 326 (358)
Q Consensus 257 ~~~s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~-Gp~GG~I~~ 326 (358)
+++.+ .|...+ +++|.++|++||++||+|++|. |+ ..+... ..++ ..|++++ +|+++ |.+.|++++
T Consensus 208 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~-g~-~~g~~~~~~~~~~~~di~t~--sK~~~~G~~iG~~~~ 283 (434)
T 3l44_A 208 VEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVIT-AF-RFMYGGAQDLLGVTPDLTAL--GKVIGGGLPIGAYGG 283 (434)
T ss_dssp ECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTT-TT-TSSSSCHHHHHTCCCSEEEE--EGGGGTTSSCEEEEE
T ss_pred EcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-ce-eccccHHHHHcCCCCCeeeh--hhhhcCCcCeeeEEE
Confidence 87544 234555 9999999999999999999986 54 333211 0112 4577655 49884 456788888
Q ss_pred eCCCCchhHHHHHHh
Q 018300 327 KKDPVLGVELESAIN 341 (358)
Q Consensus 327 ~~~~~~~~~~~~~i~ 341 (358)
++ ++.+.+.
T Consensus 284 ~~------~i~~~~~ 292 (434)
T 3l44_A 284 KK------EIMEQVA 292 (434)
T ss_dssp CH------HHHTTBT
T ss_pred cH------HHHHhhc
Confidence 76 5555544
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.9e-12 Score=122.55 Aligned_cols=199 Identities=17% Similarity=0.104 Sum_probs=116.2
Q ss_pred cHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceEEeCCCHHHHHHHHHHhcc-CC
Q 018300 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAILK-PH 192 (358)
Q Consensus 115 s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~-~~~~~v~V~~~SGt~A~~~a~~all~-pG 192 (358)
+|.|++++...+.... . +...+| ..+.. ...++++++++|.+ .+ ..+++++|++|+..++.++.. +|
T Consensus 61 ~p~v~~a~~~~~~~~~-~-~~~~~~--~~~~~----~~l~~~la~~~~~~~~~---~v~~~~gg~ea~~~ai~~~~~~~~ 129 (419)
T 2eo5_A 61 HPEVIKIGIEQMQKLA-H-AAANDF--YNIPQ----LELAKKLVTYSPGNFQK---KVFFSNSGTEAIEASIKVVKNTGR 129 (419)
T ss_dssp CHHHHHHHHHHHTTSC-C-CSCSCS--CCHHH----HHHHHHHHHHSSCSSCE---EEEEESSHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHhhCc-c-cccccc--CCHHH----HHHHHHHHHhCCCCcCC---EEEEeCchHHHHHHHHHHHHHhhC
Confidence 7999999988764321 1 111112 12222 22445688999986 43 134456778899999987643 49
Q ss_pred CEEEecCCCCCccccccc-cc----chh-ccccCCceEEEEeceecCCC----CC-----------CCHHHHH-HHhhh-
Q 018300 193 DRIMGLDLPHGGHLSHGF-MT----PKR-RVSGTSIYFESMPYRLDEST----GL-----------VDYDMLE-KTAIL- 249 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~-~~----~~~-~~~~~g~~~~~~~~~~~~~~----~~-----------iD~d~le-~~i~~- 249 (358)
|+|++.++.+.|...... .. ... ........+..++ .+... +. +|+++|+ +.++.
T Consensus 130 ~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~ 207 (419)
T 2eo5_A 130 KYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVP--YPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNL 207 (419)
T ss_dssp CEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEEC--CCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHT
T ss_pred CcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEEC--CCccccccccccccccchhhHHHHHHHHHHHHHhhc
Confidence 999998876544321000 00 000 0000011233343 32110 11 4688998 87764
Q ss_pred ---cCCeEEEEcCCC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcCcCcCc
Q 018300 250 ---FRPKLIIAGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR 317 (358)
Q Consensus 250 ---~~~klIi~~~s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~hK~L~ 317 (358)
.++++|++++.+ .|...+ +++|.++|+++|++|++|++|+ |+...|.. . ..++ ..|+++ ++|+|+
T Consensus 208 ~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-~~g~~g~~~~~~~~~~~~d~~t--~sK~~~ 284 (419)
T 2eo5_A 208 VPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQM-GLGRTGKLFAIENFNTVPDVIT--LAKALG 284 (419)
T ss_dssp CCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEE--ECGGGG
T ss_pred cCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCccCcchhhHHhcCCCCCEEE--eccccc
Confidence 356788887654 354455 9999999999999999999997 33222221 1 1112 467775 559986
Q ss_pred c--CcEEEEEEeCC
Q 018300 318 G--PRGGMIFFKKD 329 (358)
Q Consensus 318 G--p~GG~I~~~~~ 329 (358)
+ .+.|+++++++
T Consensus 285 ~G~~riG~~~~~~~ 298 (419)
T 2eo5_A 285 GGIMPIGATIFRKD 298 (419)
T ss_dssp TTTSCCEEEEEEGG
T ss_pred CCccceEEEEEchH
Confidence 4 56699988874
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.3e-12 Score=123.71 Aligned_cols=202 Identities=12% Similarity=0.054 Sum_probs=116.4
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc----
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all---- 189 (358)
.+|.|.+++...+... ...++. +| -.+ .....+++++++++.+.+ ..++++||++|+..++.++.
T Consensus 46 ~~p~v~~a~~~~~~~~-~~~~~~-~~--~~~----~~~~l~~~la~~~~~~~~---~v~~~~gg~ea~~~al~~~~~~~~ 114 (430)
T 3i4j_A 46 GRAEVGERMAAQAARL-PFVHGS-QF--SSD----VLEEYAGRLARFVGLPTF---RFWAVSGGSEATESAVKLARQYHV 114 (430)
T ss_dssp CCHHHHHHHHHHHHHC-CCCCTT-TC--EEH----HHHHHHHHHHHHTTCTTC---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-cccccc-cc--CCH----HHHHHHHHHHHhCCCCCC---EEEEeCcHHHHHHHHHHHHHHHHH
Confidence 3889999988776542 111111 11 122 233355678899987654 23556678899999998875
Q ss_pred ----cCCCEEEecCCCCCcccccccccchhccccCCc--------------eEEEEeceecCCCCCCCHHHHHHHhhh--
Q 018300 190 ----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI--------------YFESMPYRLDESTGLVDYDMLEKTAIL-- 249 (358)
Q Consensus 190 ----~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~--------------~~~~~~~~~~~~~~~iD~d~le~~i~~-- 249 (358)
.+||+|++.++.+.|+.... ....+. .+..++++-....+..|+++|++.++.
T Consensus 115 ~~g~~~~~~vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 187 (430)
T 3i4j_A 115 ERGEPGRFKVITRVPSYHGASLGS-------LAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREG 187 (430)
T ss_dssp HTTCTTCCEEEEETTC--------------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHC
T ss_pred hcCCCCCcEEEEEeCCcCCCCccc-------ccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcC
Confidence 45789999887655432110 011111 011111100000012366889888864
Q ss_pred -cCCeEEEEcCCCC---CCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCC-C-CCcEEEEcCcCcCc
Q 018300 250 -FRPKLIIAGASAY---PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPF-K-YCDVVTTTTHKSLR 317 (358)
Q Consensus 250 -~~~klIi~~~s~~---~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl-~-gaDiv~~S~hK~L~ 317 (358)
.++++|++++.+. |...+ +++|.++|+++|++||+|++|+ |+...|... ..+ + ..|++++| |+|.
T Consensus 188 ~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-~~~~~g~~~~~~~~~~~~~di~t~s--K~l~ 264 (430)
T 3i4j_A 188 PETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMS-GMGRCGSPLALSRWSGVTPDIAVLG--KGLA 264 (430)
T ss_dssp GGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTTCCCSEEEEC--GGGT
T ss_pred CCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccchhhhhhhcCCCCcEEEEc--cccc
Confidence 3456778776443 22334 8999999999999999999987 443333211 112 2 35777655 9985
Q ss_pred -c-CcEEEEEEeCCCCchhHHHHHHhh
Q 018300 318 -G-PRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 318 -G-p~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
| .+.|++++++ ++.+.+..
T Consensus 265 ~G~~r~G~~~~~~------~i~~~~~~ 285 (430)
T 3i4j_A 265 AGYAPLAGLLAAP------QVYETVMG 285 (430)
T ss_dssp TTSSCCEEEEECH------HHHHHHHH
T ss_pred CCccccEEEEECH------HHHHHHhc
Confidence 4 5668998876 67676664
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-11 Score=120.53 Aligned_cols=190 Identities=17% Similarity=0.100 Sum_probs=116.6
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~p 191 (358)
.+|.|.+++...+..... +. + -.+ .....+++++++++ +.+ ..++++||++|+..++... ...
T Consensus 69 ~~p~v~~a~~~~~~~~~~--~~---~--~~~----~~~~la~~l~~~~~-~~~---~v~~~~ggsea~~~al~~a~~~~~ 133 (427)
T 3fq8_A 69 AHPEVIEALKVAMEKGTS--FG---A--PCA----LENVLAEMVNDAVP-SIE---MVRFVNSGTEACMAVLRIMRAYTG 133 (427)
T ss_dssp TCHHHHHHHHHHHTTCSC--CS---S--CCH----HHHHHHHHHHHHST-TCS---EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCCC--cC---C--CCH----HHHHHHHHHHHhCC-CCC---EEEEeCCHHHHHHHHHHHHHHhhC
Confidence 589999999877643211 11 1 122 33345667888887 332 2456678899999998543 234
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceE-----------------EEEeceecCCCCCCCHHHHHHHhhhc--CC
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF-----------------ESMPYRLDESTGLVDYDMLEKTAILF--RP 252 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~-----------------~~~~~~~~~~~~~iD~d~le~~i~~~--~~ 252 (358)
+|+|++.++.+.|..... ....+... .+..++. -|+++|++.+++. ++
T Consensus 134 ~~~vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~ 200 (427)
T 3fq8_A 134 RDKIIKFEGCYHGHADMF-------LVKAGSGVATLGLPSSPGVPKKTTANTLTTPY------NDLEAVKALFAENPGEI 200 (427)
T ss_dssp CCEEEEEETCCCCSCGGG-------CSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET------TCHHHHHHHHHHSTTTE
T ss_pred CCEEEEECCCcCCCCHHH-------HHhcCCcccccCCCCCCCCCCcccCceeecCC------CCHHHHHHHHHhCCCCE
Confidence 578888776554432110 01111100 0111111 1899999988764 56
Q ss_pred eEEEEcCCC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCc-cCcEE
Q 018300 253 KLIIAGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGG 322 (358)
Q Consensus 253 klIi~~~s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~-Gp~GG 322 (358)
++|++++.+ .|...+ +++|.++|++||++||+|++|+ |+ ..+... ..++ ..|++++| |+|+ |.+.|
T Consensus 201 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~-~~g~~~~~~~~~~~~di~t~s--K~~~~G~~~G 276 (427)
T 3fq8_A 201 AGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVIT-GF-RIAYGGVQEKFGVTPDLTTLG--KIIGGGLPVG 276 (427)
T ss_dssp EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BT-TTBTTHHHHHTTCCCSEEEEC--GGGGTTSSCE
T ss_pred EEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-cc-ccCcchhhHhcCCCCChhhhh--hhhhCCcceE
Confidence 788887643 344566 9999999999999999999997 66 333210 1122 45777665 9985 55789
Q ss_pred EEEEeCCCCchhHHHHHHh
Q 018300 323 MIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 323 ~I~~~~~~~~~~~~~~~i~ 341 (358)
++++++ ++.+.+.
T Consensus 277 ~~~~~~------~~~~~~~ 289 (427)
T 3fq8_A 277 AYGGKR------EIMQLVA 289 (427)
T ss_dssp EEEECH------HHHTTBT
T ss_pred EEEEcH------HHHHhhc
Confidence 998876 5655554
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-12 Score=125.41 Aligned_cols=191 Identities=9% Similarity=-0.044 Sum_probs=116.4
Q ss_pred hcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEE-eCCCHHHH
Q 018300 103 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQ-PLSGSPAN 181 (358)
Q Consensus 103 ~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~-~~SGt~A~ 181 (358)
..+++.+++..+|+.|++++.... +. ..++ ..+ +... .++.+.+++++++++|++..+ ..++ +++|++|+
T Consensus 40 ~~~~~~~~~~~~~~~v~~a~~~~~-~~-~~~~-~~~---~~~~-~~~~~~~~~~la~~~g~~~~~--~i~~~t~g~t~al 110 (398)
T 2fyf_A 40 RDGRFGSGPSKVRLEQLQTLTTTA-AA-LFGT-SHR---QAPV-KNLVGRVRSGLAELFSLPDGY--EVILGNGGATAFW 110 (398)
T ss_dssp SSCBCCSSSCCCCHHHHHGGGTTT-TT-TTTS-CTT---SHHH-HHHHHHHHHHHHHHTTCCTTC--EEEEEETCHHHHH
T ss_pred CCccccCCCCCCCHHHHHHHhhcC-CC-ccCc-CcC---CHHH-HHHHHHHHHHHHHHhCCCCCc--eEEEeCCchhHHH
Confidence 566777888899999999987621 01 0110 011 2233 233445788999999997421 1233 56778899
Q ss_pred HHHHHHhccCC-CEEEecCCCCCcccccccccchhccccC--CceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEc
Q 018300 182 FEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGT--SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258 (358)
Q Consensus 182 ~~a~~all~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~ 258 (358)
..++.++++|| |.| ....|+ +.+. ...... |..+..++ ++ ++..+|. + +. .++|+|++.
T Consensus 111 ~~~~~~l~~~gv~~v--~~~~~~----~~~~---~~~~~~~~g~~~~~v~--~~-~g~~~~~-~----i~-~~~~~v~~~ 172 (398)
T 2fyf_A 111 DAAAFGLIDKRSLHL--TYGEFS----AKFA---SAVSKNPFVGEPIIIT--SD-PGSAPEP-Q----TD-PSVDVIAWA 172 (398)
T ss_dssp HHHHHHTCSSCEEEE--ECSHHH----HHHH---HHHHHCTTSCCCEEEE--CC-TTCCCCC-C----CC-TTCSEEEEE
T ss_pred HHHHHHhcCCCeEEE--eCCHHH----HHHH---HHHHHhCCCCceEEEe--cC-CCCCCCc-c----cc-CCCCEEEEe
Confidence 99999999998 544 222221 1000 011122 44334444 44 2223332 1 33 368888775
Q ss_pred CCC--CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCc-EEEEEEeC
Q 018300 259 ASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPR-GGMIFFKK 328 (358)
Q Consensus 259 ~s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~-GG~I~~~~ 328 (358)
.++ +|...|+++|.++ +|+++++|++|+.|.. +.+++++|++++|+||+++++. .|+++.++
T Consensus 173 ~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~-----~~~~~~~di~~~s~sK~~~~~gg~g~l~~~~ 237 (398)
T 2fyf_A 173 HNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGL-----PVDIAETDAYYFAPQKNFASDGGLWLAIMSP 237 (398)
T ss_dssp SEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTS-----CCCGGGCSEEEECTTSTTCSCSSEEEEEECH
T ss_pred CcCCCcceecchHHhhhh---cCCeEEEEeccccCCc-----ccCcccCcEEEEecCcccCCCCceEEEEECH
Confidence 443 4667888888777 8999999999986542 2223368999999999987663 47888876
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=122.26 Aligned_cols=194 Identities=16% Similarity=0.078 Sum_probs=115.3
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~p 191 (358)
.+|.|.+++...+.... .|.. ..+.. +....++++++++++....+ ..++++||++|+..++..+ ..+
T Consensus 60 ~~p~v~~a~~~~~~~~~--~~~~---~~~~~---~~~~~l~~~la~~~~~~~~~--~v~~~~ggsea~~~al~~~~~~~~ 129 (439)
T 3dxv_A 60 GHPAIVAAVSAAAANPA--GATI---LSASN---APAVTLAERLLASFPGEGTH--KIWFGHSGSDANEAAYRAIVKATG 129 (439)
T ss_dssp SCHHHHHHHHHHHHSCS--CSCS---SSSEE---HHHHHHHHHHHHTTTCTTTE--EEEEESSHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcc--Cccc---cccCC---HHHHHHHHHHHHhCCCCCCC--EEEEeCCHHHHHHHHHHHHHHHhC
Confidence 68999999987765421 1221 11221 23334566788888654311 2466778999999999875 446
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceE------------EEEeceecCCCCCC-----CHHHHHHHhh---hcC
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF------------ESMPYRLDESTGLV-----DYDMLEKTAI---LFR 251 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~------------~~~~~~~~~~~~~i-----D~d~le~~i~---~~~ 251 (358)
+++|++.++.+.|.... .....+... ....++.+. .... |+++|++.+. ..+
T Consensus 130 ~~~vi~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~le~~l~~~~~~~ 201 (439)
T 3dxv_A 130 RSGVIAFAGAYHGCTVG-------SMAFSGHSVQADAAKADGLILLPYPDPYRP-YRNDPTGDAILTLLTEKLAAVPAGS 201 (439)
T ss_dssp CCEEEEETTCCCCSSHH-------HHCC-------------CEEEECCCCSSSC-BTTBTTSHHHHHHHHHHHHTSCTTC
T ss_pred CCEEEEECCCCCCCcHH-------HHhhcCCCchhhccccCCCCCCcEEcCCCc-ccccccHHHHHHHHHHHHHhcCCCC
Confidence 77888776544332110 111222100 011111111 1111 7899999883 335
Q ss_pred CeEEEEcCCC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCC-cc-CCCC-CCcEEEEcCcCcCc-cCcE
Q 018300 252 PKLIIAGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCDVVTTTTHKSLR-GPRG 321 (358)
Q Consensus 252 ~klIi~~~s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~-~~-~pl~-gaDiv~~S~hK~L~-Gp~G 321 (358)
+++|++++.+ .|...+ +++|.++|++||++||+|++|+ |+...|. .. ..++ ..|++ |++|++. |.+.
T Consensus 202 ~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-g~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~ri 278 (439)
T 3dxv_A 202 IGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV-GLARSGRLHCFEHEGFVPDIL--VLGKGLGGGLPL 278 (439)
T ss_dssp EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-CTTTTSSSSGGGGTTCCCSEE--EECGGGGTTSCC
T ss_pred EEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCchhhHHHhcCCCCCEE--EEcchhcCCcce
Confidence 6788887543 345556 9999999999999999999997 5533332 11 1122 46777 5569884 4677
Q ss_pred EEEEEeC
Q 018300 322 GMIFFKK 328 (358)
Q Consensus 322 G~I~~~~ 328 (358)
|++++++
T Consensus 279 G~~~~~~ 285 (439)
T 3dxv_A 279 SAVIAPA 285 (439)
T ss_dssp EEEEEEH
T ss_pred EEEEECH
Confidence 9999987
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-11 Score=122.13 Aligned_cols=198 Identities=18% Similarity=0.149 Sum_probs=117.9
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~p 191 (358)
.+|.|.+++.+.+.+....+ | ..+ .....+++++++++ ..+ ..++++||++|+..++.+. +.+
T Consensus 73 ~~~~v~~a~~~~~~~~~~~~-----~--~~~----~~~~l~~~la~~~~-~~~---~v~~~~sgseA~~~al~~ar~~~~ 137 (434)
T 2epj_A 73 KHPRVLEAVEEALARGWLYG-----A--PGE----AEVLLAEKILGYVK-RGG---MIRFVNSGTEATMTAIRLARGYTG 137 (434)
T ss_dssp TCHHHHHHHHHHHHTCSCCS-----S--CCH----HHHHHHHHHHHHHC-TTC---EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCCCCC-----C--CCH----HHHHHHHHHHHhCC-CCC---EEEEeCCHHHHHHHHHHHHHHhhC
Confidence 68999999988775421111 1 122 23335566888884 222 2356778999999999862 445
Q ss_pred CCEEEecCCCCCcccccccccchhc------cccCCce----EEEEeceecCCCCCCCHHHHHHHhhh--cCCeEEEEcC
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRR------VSGTSIY----FESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGA 259 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~------~~~~g~~----~~~~~~~~~~~~~~iD~d~le~~i~~--~~~klIi~~~ 259 (358)
+|+|++.++.|.|+........... ....|.. .++..++ ..|+++|++.+++ .++++|++++
T Consensus 138 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~~~vi~ep 211 (434)
T 2epj_A 138 RDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTP------YNDVEALERVFAEYGDRIAGVIVEP 211 (434)
T ss_dssp CCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEE------TTCHHHHHHHHHHHGGGEEEEEECS
T ss_pred CCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecC------CCCHHHHHHHHHhCCCCEEEEEEeC
Confidence 6788887765544321000000000 0001210 0112222 1389999998864 2567888875
Q ss_pred CC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcCcCcCcc-CcEEEEEEeCC
Q 018300 260 SA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKD 329 (358)
Q Consensus 260 s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~hK~L~G-p~GG~I~~~~~ 329 (358)
.+ .|...+ +++|.++|+++|++||+|++|+ |+. .+.. . ..++ ..|++ |++|+|++ .++|++++++
T Consensus 212 ~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~-~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~- 286 (434)
T 2epj_A 212 VIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFR-LGLEGAQGYFNIEGDII--VLGKIIGGGFPVGAVAGSR- 286 (434)
T ss_dssp SBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTT-SSTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECH-
T ss_pred CcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-cee-CCcchhhHHhCCCCCee--eecchhcCCcceeeeeecH-
Confidence 43 456677 9999999999999999999998 662 2211 0 1112 46776 45699854 4789999886
Q ss_pred CCchhHHHHHHhh
Q 018300 330 PVLGVELESAINN 342 (358)
Q Consensus 330 ~~~~~~~~~~i~~ 342 (358)
++.+.+..
T Consensus 287 -----~~~~~l~~ 294 (434)
T 2epj_A 287 -----EVMSLLTP 294 (434)
T ss_dssp -----HHHTTBTT
T ss_pred -----HHHHhhcc
Confidence 55555543
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-11 Score=120.03 Aligned_cols=205 Identities=13% Similarity=0.040 Sum_probs=119.9
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc--cC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--~p 191 (358)
.+|.|.+++...+... . +....| ..+ .....+++++++++.+.+ ..++++||++|+..++..+. ..
T Consensus 60 ~~p~v~~a~~~~~~~~-~--~~~~~~--~~~----~~~~l~~~la~~~~~~~~---~v~~~~gg~ea~~~a~~~~~~~~~ 127 (433)
T 1zod_A 60 CHPEIVSVIGEYAGKL-D--HLFSEM--LSR----PVVDLATRLANITPPGLD---RALLLSTGAESNEAAIRMAKLVTG 127 (433)
T ss_dssp TCHHHHHHHHHHHHHC-C--CCCTTC--CCH----HHHHHHHHHHHHSCTTCC---EEEEESCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC-c--cccccc--CCH----HHHHHHHHHHHhCCCCcC---EEEEeCchHHHHHHHHHHHHHhhC
Confidence 4899999998876542 1 111111 122 222245568889987653 23556688899999997653 34
Q ss_pred CCEEEecCCCCCccccccc-cc--c-hhc--cccCCceEEEEeceecCC---------CCCCCHHHHHHHhhh---cCCe
Q 018300 192 HDRIMGLDLPHGGHLSHGF-MT--P-KRR--VSGTSIYFESMPYRLDES---------TGLVDYDMLEKTAIL---FRPK 253 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~-~~--~-~~~--~~~~g~~~~~~~~~~~~~---------~~~iD~d~le~~i~~---~~~k 253 (358)
+|+|++.++.+.|...... .+ . +.. ....+ +..++++.... .+.+|+++|++.++. .+++
T Consensus 128 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~ 205 (433)
T 1zod_A 128 KYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVG--SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLA 205 (433)
T ss_dssp CCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTT--EEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEE
T ss_pred CCeEEEECCCcCCCChhHHhhcCCccccccCCCCCC--ceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeE
Confidence 6899988876544211000 00 0 000 00112 33443321100 012468999998864 3567
Q ss_pred EEEEcCCC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCccCCC---C-CCcEEEEcCcCcCc-cCcEE
Q 018300 254 LIIAGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSLR-GPRGG 322 (358)
Q Consensus 254 lIi~~~s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~-gaDiv~~S~hK~L~-Gp~GG 322 (358)
+|++++.+ .|...+ +++|.++|+++|++||+|++|+ |+...+.. ..+ + ..|+++ ++|+|+ |.+.|
T Consensus 206 ~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-~~g~~g~~-~~~~~~~~~~di~s--~sK~~~~G~~ig 281 (433)
T 1zod_A 206 AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT-GVGRTGTM-FACQRDGVTPDILT--LSKTLGAGLPLA 281 (433)
T ss_dssp EEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-STHHHHTCCCSEEE--ECHHHHTTSSCE
T ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCcCchH-hHHhhcCCCCCEEE--ecccccCCCCee
Confidence 88887543 354444 9999999999999999999998 43222221 111 2 457764 559985 45669
Q ss_pred EEEEeCCCCchhHHHHHHhh
Q 018300 323 MIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 323 ~I~~~~~~~~~~~~~~~i~~ 342 (358)
++++++ ++.+.+..
T Consensus 282 ~~~~~~------~~~~~~~~ 295 (433)
T 1zod_A 282 AIVTSA------AIEERAHE 295 (433)
T ss_dssp EEEECH------HHHHHHHH
T ss_pred EEEEhH------HHHHhhcc
Confidence 999887 56666655
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.3e-11 Score=118.68 Aligned_cols=206 Identities=13% Similarity=0.007 Sum_probs=120.1
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc----
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all---- 189 (358)
.+|.|.+|+...+.... +.. ..+..+ .....+++++++++.+.+ .++++||++|+..++..+.
T Consensus 66 ~~p~v~~A~~~~~~~~~---~~~--~~~~~~----~~~~la~~l~~~~~~~~~----v~~~~ggseA~~~al~~~~~~~~ 132 (452)
T 3n5m_A 66 GRKELAEAAYKQLQTLS---YFP--MSQSHE----PAIKLAEKLNEWLGGEYV----IFFSNSGSEANETAFKIARQYYA 132 (452)
T ss_dssp CCHHHHHHHHHHHTTCC---CCC--TTSEEH----HHHHHHHHHHHHHTSCEE----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC---Ccc--cccCCH----HHHHHHHHHHHhCCCCce----EEEeCchHHHHHHHHHHHHHHHH
Confidence 47999999987764321 111 111223 233356678888887653 3566789999999998876
Q ss_pred -c---CCCEEEecCCCCCccccccc-ccchhcc----ccCCceEEEEeceecCCCCCCC---------HHHHHHHhh---
Q 018300 190 -K---PHDRIMGLDLPHGGHLSHGF-MTPKRRV----SGTSIYFESMPYRLDESTGLVD---------YDMLEKTAI--- 248 (358)
Q Consensus 190 -~---pGD~Vl~~~~~~ggh~s~~~-~~~~~~~----~~~g~~~~~~~~~~~~~~~~iD---------~d~le~~i~--- 248 (358)
. ++|+|++.++.+.|+..-.. .+..... .-....+..++.+.......-| +++|++.++
T Consensus 133 ~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 212 (452)
T 3n5m_A 133 QKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWEL 212 (452)
T ss_dssp TTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHC
T ss_pred hcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcC
Confidence 5 88999998876654321000 0000000 0000012222221110000112 899999886
Q ss_pred hcCCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcCcCcCc-c
Q 018300 249 LFRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-G 318 (358)
Q Consensus 249 ~~~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~hK~L~-G 318 (358)
..++++|++++. +.|...+ +++|+++|++||++||+|++|+ |+...|.. . ...+ ..|++++| |++. |
T Consensus 213 ~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~t~s--K~l~~G 289 (452)
T 3n5m_A 213 SETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVIC-GFGRTGKAFGFMNYDVKPDIITMA--KGITSA 289 (452)
T ss_dssp GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTCCCSEEEEC--GGGGTT
T ss_pred CCCEEEEEEccccCCCCeeeCCHHHHHHHHHHHHHcCCEEEEecchh-CCCcccccchhhhcCCCCCEEeec--ccccCC
Confidence 235678888765 3344454 9999999999999999999987 44322321 1 1112 45777655 8874 4
Q ss_pred -CcEEEEEEeCCCCchhHHHHHHh
Q 018300 319 -PRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 319 -p~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
.+.|++++++ ++.+.+.
T Consensus 290 ~~~ig~~~~~~------~i~~~~~ 307 (452)
T 3n5m_A 290 YLPLSATAVKR------EIYEAFK 307 (452)
T ss_dssp SSCCEEEEEEH------HHHGGGC
T ss_pred CcceEEEEECH------HHHHHHh
Confidence 5668998887 5666553
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-11 Score=119.97 Aligned_cols=194 Identities=16% Similarity=0.113 Sum_probs=115.7
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc--C
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--P 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~--p 191 (358)
.+|.|.+|+...+......+|| .+...+ .+++++++++ ..+ ..++++||++|+..++..+.. +
T Consensus 70 ~~p~v~~A~~~~~~~~~~~~~~-------~~~~~~----l~~~la~~~~-~~~---~v~~~~~Gsea~~~ai~~a~~~~~ 134 (429)
T 3k28_A 70 ANDRVVEALKAVAERGTSFGAP-------TEIENK----LAKLVIERVP-SIE---IVRMVNSGTEATMSALRLARGYTG 134 (429)
T ss_dssp SCHHHHHHHHHHHHHCSCCSSC-------CHHHHH----HHHHHHHHST-TCS---EEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhCcCcCCC-------CHHHHH----HHHHHHHhCC-CCC---EEEEeCChHHHHHHHHHHHHHhhC
Confidence 5899999998877543221222 222222 3456788886 332 245667899999999987643 6
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCC-------------CCHHHHHHHhhh--cCCeEEE
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-------------VDYDMLEKTAIL--FRPKLII 256 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------------iD~d~le~~i~~--~~~klIi 256 (358)
+|+|++.++.+.|+... .....+.......++.. .+. -|++++++.++. .++++|+
T Consensus 135 ~~~vi~~~~~yhg~~~~-------~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi 205 (429)
T 3k28_A 135 RNKILKFIGCYHGHGDS-------LLIKAGSGVATLGLPDS--PGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVI 205 (429)
T ss_dssp CCEEEEEETCCCCSCGG-------GCSSCCTTC-----CCC--TTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEE
T ss_pred CCEEEEECCCcCCCcHH-------HHHhcCCcccccCCCCc--CCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEE
Confidence 78898877654443211 11111211111111100 111 188999998864 2457788
Q ss_pred EcCCC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCc-cCcEEEEEE
Q 018300 257 AGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIFF 326 (358)
Q Consensus 257 ~~~s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~-Gp~GG~I~~ 326 (358)
+++.+ .|...+ +++|.++|++||++||+|++|. |+ ..+... ..++ ..|++++ +|+|. |.+.|++++
T Consensus 206 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~-~~g~~~~~~~~~~~~di~t~--sK~~~~G~~iG~~~~ 281 (429)
T 3k28_A 206 VEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMT-GF-RVAYNCGQGYYGVTPDLTCL--GKVIGGGLPVGAYGG 281 (429)
T ss_dssp ECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TT-TSSTTHHHHHHTCCCSEEEE--CGGGGTTSCCEEEEE
T ss_pred EcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-cc-ccCcchHHHHhCCCCceehh--hhhhcCCCCeEEEEE
Confidence 87543 244555 9999999999999999999985 65 333211 0112 4577655 59984 467799988
Q ss_pred eCCCCchhHHHHHHh
Q 018300 327 KKDPVLGVELESAIN 341 (358)
Q Consensus 327 ~~~~~~~~~~~~~i~ 341 (358)
++ ++.+.+.
T Consensus 282 ~~------~~~~~~~ 290 (429)
T 3k28_A 282 KA------EIMRQVA 290 (429)
T ss_dssp CH------HHHTTBT
T ss_pred cH------HHHhhhc
Confidence 76 5555543
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-11 Score=122.17 Aligned_cols=189 Identities=15% Similarity=0.113 Sum_probs=112.2
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHH---hc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA---IL 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~a---ll 189 (358)
+.+|.|.+++...+.... .+ ++. .++++.++++++++++ +.+ ..++++||++|+..++.+ +.
T Consensus 73 ~~~~~v~~a~~~~~~~~~--~~------~~~---~~~~~~la~~l~~~~~-~~~---~v~~~~gg~eA~~~al~~ar~~~ 137 (453)
T 2cy8_A 73 HGHPRVNAAIAEALSHGV--QY------AAS---HPLEVRWAERIVAAFP-SIR---KLRFTGSGTETTLLALRVARAFT 137 (453)
T ss_dssp BTCHHHHHHHHHHHTTTC--SS------CSS---CHHHHHHHHHHHHHCT-TCS---EEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCC--CC------CCC---CHHHHHHHHHHHhhCC-CCC---EEEEeCCHHHHHHHHHHHHHHhh
Confidence 368999999988765421 11 111 2456667778888886 332 235667889999999887 55
Q ss_pred cCCCEEEecCCCCCcccccccccchhc----cccCCceE----EEEeceecCCCCCCCHHHHHHHhhh--cCCeEEEEcC
Q 018300 190 KPHDRIMGLDLPHGGHLSHGFMTPKRR----VSGTSIYF----ESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGA 259 (358)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~----~~~~g~~~----~~~~~~~~~~~~~iD~d~le~~i~~--~~~klIi~~~ 259 (358)
+ +|+|++.++.|.|+..... ..... ....|... .+..++ ..|+++|++.++. .++++|++++
T Consensus 138 ~-~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~~~vi~ep 209 (453)
T 2cy8_A 138 G-RRMILRFEGHYHGWHDFSA-SGYNSHFDGQPAPGVLPETTANTLLIR------PDDIEGMREVFANHGSDIAAFIAEP 209 (453)
T ss_dssp C-CCEEEEECC-----------------------------CGGGEEEEC------TTCHHHHHHHHHHHGGGEEEEEECS
T ss_pred C-CCEEEEEcCCcCCCchhhH-hhcCCccCCCcCCCCCccccCceeecC------CCCHHHHHHHHHhcCCCEEEEEECC
Confidence 5 4677777765544321100 00000 00011100 011111 2489999998864 2567888876
Q ss_pred CC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCc-cCcEEEEEEeC
Q 018300 260 SA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKK 328 (358)
Q Consensus 260 s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~-Gp~GG~I~~~~ 328 (358)
.. .|...+ +++|.++|++||++||+|++|+ |+ ..+... ..++ ..|++ |++|+|+ |.++|++++++
T Consensus 210 ~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~ 284 (453)
T 2cy8_A 210 VGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GF-RVGNHGMQALLDVQPDLT--CLAKASAGGLPGGILGGRE 284 (453)
T ss_dssp SEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TT-TTCTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECH
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-cc-ccCchhhhHHhCCCCcEE--EEChhhhCCcceEEEechH
Confidence 43 355566 9999999999999999999997 76 323210 1112 46776 5559996 46889999886
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.3e-11 Score=115.74 Aligned_cols=197 Identities=18% Similarity=0.204 Sum_probs=113.7
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~p 191 (358)
.+|.|.+++...+......+|+ .+ .....+++++++++ ..+ ..++++||++|+..++... ..+
T Consensus 70 ~~p~v~~A~~~~~~~~~~~~~~-------~~----~~~~la~~l~~~~~-~~~---~v~~~~sGsea~~~al~~a~~~~~ 134 (429)
T 4e77_A 70 NHPAIRQAVIEAVERGLSFGAP-------TE----MEVKMAQLVTDLVP-TMD---MVRMVNSGTEATMSAIRLARGYTG 134 (429)
T ss_dssp TCHHHHHHHHHHHTTCSCCSSC-------CH----HHHHHHHHHHHHST-TCS---EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCcccCCC-------CH----HHHHHHHHHHhhCC-CCC---EEEEeCcHHHHHHHHHHHHHHhhC
Confidence 5899999998877543222222 22 22234556888886 332 2466778999999998754 246
Q ss_pred CCEEEecCCCCCcccccccccch-hcc-----ccCCc----eEEEEeceecCCCCCCCHHHHHHHhhhc--CCeEEEEcC
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPK-RRV-----SGTSI----YFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGA 259 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~-~~~-----~~~g~----~~~~~~~~~~~~~~~iD~d~le~~i~~~--~~klIi~~~ 259 (358)
+++|++.+..+.|.......... ... ...+. ......++ ..|+++|++.++.. ++++|++++
T Consensus 135 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~~~vi~ep 208 (429)
T 4e77_A 135 RDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCT------YNDLASVRQAFEQYPQEVACIIVEP 208 (429)
T ss_dssp CCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEEC------TTCHHHHHHHHHHSTTTEEEEEECS
T ss_pred CCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecC------CCCHHHHHHHHHhcCCCEEEEEECC
Confidence 77888876554433210000000 000 00000 00001111 23899999988753 456777765
Q ss_pred CC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCc-cCcEEEEEEeCC
Q 018300 260 SA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKD 329 (358)
Q Consensus 260 s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~-Gp~GG~I~~~~~ 329 (358)
.+ .+...+ +++|.++|+++|++||+|++|+ |+ ..+... ..++ ..|++++ +|+++ |.+.|++++++
T Consensus 209 ~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~-r~g~~~~~~~~~~~pdi~t~--sK~~~~G~~~G~~~~~~- 283 (429)
T 4e77_A 209 VAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMT-GF-RVALAGAQDYYHVIPDLTCL--GKIIGGGMPVGAFGGRR- 283 (429)
T ss_dssp SBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTT-BT-TTBTTCHHHHTTCCCSEEEE--EGGGGTTSCCEEEEECH-
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Cc-ccCcchHHHhcCCCCCeeee--cccccCCCCeEEEEECH-
Confidence 43 244455 9999999999999999999998 55 322211 1122 4577654 59985 55788988876
Q ss_pred CCchhHHHHHHh
Q 018300 330 PVLGVELESAIN 341 (358)
Q Consensus 330 ~~~~~~~~~~i~ 341 (358)
++.+.+.
T Consensus 284 -----~~~~~l~ 290 (429)
T 4e77_A 284 -----EVMNALA 290 (429)
T ss_dssp -----HHHTTBT
T ss_pred -----HHHHHhc
Confidence 5555544
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.5e-11 Score=119.12 Aligned_cols=208 Identities=12% Similarity=0.003 Sum_probs=121.8
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc---
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~--- 190 (358)
.+|.|.+|+...+.... .+++..++ ..+ .....+++++++++.+.+ ..++++||++|+..++..+.+
T Consensus 67 ~~p~v~~A~~~~~~~~~-~~~~~~~~--~~~----~~~~la~~l~~~~~~~~~---~v~~~~ggseA~~~al~~~~~~~~ 136 (459)
T 4a6r_A 67 GRKDFAEAARRQMEELP-FYNTFFKT--THP----AVVELSSLLAEVTPAGFD---RVFYTNSGSESVDTMIRMVRRYWD 136 (459)
T ss_dssp CCHHHHHHHHHHHHHCS-CCCTTSSS--CCH----HHHHHHHHHHHHSCTTCC---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc-cccccccc--CCH----HHHHHHHHHHHhCCCCCC---EEEEeCchHHHHHHHHHHHHHHHH
Confidence 47999999988765421 12222111 223 333356678889887654 235567889999999988865
Q ss_pred -----CCCEEEecCCCCCcccccccc-cc---h-hccccCCceEEEEecee--cCCCCCCC--------HHHHHHHhhh-
Q 018300 191 -----PHDRIMGLDLPHGGHLSHGFM-TP---K-RRVSGTSIYFESMPYRL--DESTGLVD--------YDMLEKTAIL- 249 (358)
Q Consensus 191 -----pGD~Vl~~~~~~ggh~s~~~~-~~---~-~~~~~~g~~~~~~~~~~--~~~~~~iD--------~d~le~~i~~- 249 (358)
++|+|++.++.+.|+...... +. . .........+..++++. +.... .| +++|++.+..
T Consensus 137 ~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~ 215 (459)
T 4a6r_A 137 VQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEI 215 (459)
T ss_dssp HTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHc
Confidence 578999988766543210000 00 0 00000011123333222 10011 35 7888888763
Q ss_pred --cCCeEEEEcCCC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCcc
Q 018300 250 --FRPKLIIAGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG 318 (358)
Q Consensus 250 --~~~klIi~~~s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~G 318 (358)
.++++|++++.+ .|...+ +++|.++|++||++||+|++|+ |+...|... ..++ ..|++++| |+|.|
T Consensus 216 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~pdi~t~s--K~l~g 292 (459)
T 4a6r_A 216 GADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVIC-GFGRTGEWFGHQHFGFQPDLFTAA--KGLSS 292 (459)
T ss_dssp CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEEEC--GGGGT
T ss_pred CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcccccchHhhcCCCCCeeehh--hhhcC
Confidence 345778886543 233444 8999999999999999999987 443333211 0112 45787665 99865
Q ss_pred --CcEEEEEEeCCCCchhHHHHHHh
Q 018300 319 --PRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 319 --p~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
.+.|++++++ ++.+.+.
T Consensus 293 g~~~lg~v~~~~------~i~~~~~ 311 (459)
T 4a6r_A 293 GYLPIGAVFVGK------RVAEGLI 311 (459)
T ss_dssp TSSCCEEEEECH------HHHHHHH
T ss_pred CCCCccceeeCH------HHHHHhh
Confidence 6778888877 5666554
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.2e-11 Score=116.73 Aligned_cols=201 Identities=13% Similarity=0.028 Sum_probs=114.1
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc---
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~--- 190 (358)
.+|.|.+++...+... ..+++ ..+..+ .....+++++++++.+.+ ..++++||++|+..++..+..
T Consensus 61 ~~p~v~~A~~~~~~~~-~~~~~---~~~~~~----~~~~la~~l~~~~~~~~~---~v~~~~sGseA~~~al~~~~~~~~ 129 (448)
T 3dod_A 61 RKKELDDAIKKQLGKI-AHSTL---LGMTNV----PATQLAETLIDISPKKLT---RVFYSDSGAEAMEIALKMAFQYWK 129 (448)
T ss_dssp SCHHHHHHHHHHHTTC-SCCCC---SSSEEH----HHHHHHHHHHHHSCTTEE---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-cCccc---cccCCH----HHHHHHHHHHHhCCCCCC---EEEEeCchHHHHHHHHHHHHHHHH
Confidence 4799999998776432 11111 111223 233356678888865543 245677899999999988765
Q ss_pred -CC----CEEEecCCCCCcccccccccchhccccCCce----------EEEEeceecCCCC-----------CCCHHHHH
Q 018300 191 -PH----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY----------FESMPYRLDESTG-----------LVDYDMLE 244 (358)
Q Consensus 191 -pG----D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~-----------~iD~d~le 244 (358)
+| |+|++.++.+.|+... .....+.. .....++.+ +.. ..|+++|+
T Consensus 130 ~~G~~~~~~vi~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le 201 (448)
T 3dod_A 130 NIGKPEKQKFIAMKNGYHGDTIG-------AVSVGSIELFHHVYGPLMFESYKAPIP-YVYRSESGDPDECRDQCLRELA 201 (448)
T ss_dssp HTTCTTCCEEEEEC------------------------------------CEEECCC-CCTTSSSCCHHHHHHHHHHHHH
T ss_pred hhCCCCCCEEEEECCCCCCccHH-------HHHhcCCccccccccCCCCCceEeCCC-ccccCCccchhhhhHHHHHHHH
Confidence 55 9999988765443211 11111110 011111111 111 12588899
Q ss_pred HHhh--hcCCeEEEEcCCC---CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-c-CCCC-CCcEEEEcC
Q 018300 245 KTAI--LFRPKLIIAGASA---YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTT 312 (358)
Q Consensus 245 ~~i~--~~~~klIi~~~s~---~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~pl~-gaDiv~~S~ 312 (358)
+.++ ..++++|++++.. .|...+ +++|+++|++||++||+|++|+ |+...|.. . ..++ ..|++++|
T Consensus 202 ~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~-g~g~~g~~~a~~~~~~~~di~t~s- 279 (448)
T 3dod_A 202 QLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVAT-GFGRTGKMFACEHENVQPDLMAAG- 279 (448)
T ss_dssp HHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC-
T ss_pred HHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEecccc-CCCcccchhhhhhcCCCCCEEEec-
Confidence 8886 2356778877642 233333 8999999999999999999987 44322321 1 1112 45777655
Q ss_pred cCcCc-c-CcEEEEEEeCCCCchhHHHHHHhh
Q 018300 313 HKSLR-G-PRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 313 hK~L~-G-p~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
|+|. | .+.|++++++ ++.+.+..
T Consensus 280 -K~l~~G~~~ig~v~~~~------~~~~~~~~ 304 (448)
T 3dod_A 280 -KGITGGYLPIAVTFATE------DIYKAFYD 304 (448)
T ss_dssp -GGGGTTSSCCEEEEEEH------HHHHTTCS
T ss_pred -ccccCCcCceEEEEECH------HHHHHhhh
Confidence 9985 4 3778888887 56666543
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.9e-11 Score=120.90 Aligned_cols=199 Identities=15% Similarity=0.035 Sum_probs=121.4
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc---
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~--- 190 (358)
.+|.|.+|+...+... .....+ +| ..+ .....+++++++++.+.+ ..++++||++|+..++..+..
T Consensus 92 ~~p~v~~A~~~~~~~~-~~~~~~-~~--~~~----~~~~L~e~la~~~~~~~~---~v~~~~sGseA~~~Alk~a~~~~~ 160 (457)
T 3tfu_A 92 GHPALDQALTTQLRVM-NHVMFG-GL--THE----PAARLAKLLVDITPAGLD---TVFFSDSGSVSVEVAAKMALQYWR 160 (457)
T ss_dssp TCHHHHHHHHHHHHHC-SCCCSS-SE--ECH----HHHHHHHHHHHHSSTTEE---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-cCcccc-cc--CCH----HHHHHHHHHHHhCCCCcC---EEEEeCcHHHHHHHHHHHHHHHHH
Confidence 5899999998876542 111101 11 122 222356678899976543 245667899999999988754
Q ss_pred ----CCC-EEEecCCCCCcccccccccchhccccCC-------------ceEEEEeceecCCCCCCCHHHHHHHhhh--c
Q 018300 191 ----PHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTS-------------IYFESMPYRLDESTGLVDYDMLEKTAIL--F 250 (358)
Q Consensus 191 ----pGD-~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~iD~d~le~~i~~--~ 250 (358)
+|+ +|++.+..+.|... + .....+ ..+..++++.+ .....|+++|++.++. .
T Consensus 161 ~~g~~g~~~ii~~~~~yhg~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~d~~~le~~l~~~~~ 232 (457)
T 3tfu_A 161 GRGLPGKRRLMTWRGGYHGDTF-L------AMSICDPHGGMHSLWTDVLAAQVFAPQVPR-DYDPAYSAAFEAQLAQHAG 232 (457)
T ss_dssp HTTCTTCCEEEEETTCCCCSSH-H------HHTTSCCC----------CCCCEEECCCCS-SCCHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCceEEEEcCCcCCccH-H------hhcccCCcccccccccCCCCCceEecCCCc-ccCHHHHHHHHHHHHhCCC
Confidence 665 78887765544211 0 001100 01222333222 1123588999998863 3
Q ss_pred CCeEEEEcC-CC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCccCCC---C-CCcEEEEcCcCcCcc-
Q 018300 251 RPKLIIAGA-SA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSLRG- 318 (358)
Q Consensus 251 ~~klIi~~~-s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~-gaDiv~~S~hK~L~G- 318 (358)
++++|++++ .+ .|...+ +++|.++|+++|++||+|++|. |+...|.. ..+ + ..|++++ .|.|+|
T Consensus 233 ~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g~gr~G~~-~a~~~~~~~pdiit~--sK~l~gG 308 (457)
T 3tfu_A 233 ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIAT-GFGRTGAL-FAADHAGVSPDIMCV--GKALTGG 308 (457)
T ss_dssp GEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-STHHHHTCCCSEEEE--CGGGGTT
T ss_pred CEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCcc-CCccccch-hHhHhcCCCceEEEE--ChhhhCC
Confidence 567888876 33 333333 8999999999999999999976 44322321 111 2 4678754 599977
Q ss_pred -CcEEEEEEeCCCCchhHHHHHHh
Q 018300 319 -PRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 319 -p~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
++.|++++++ ++.+.+.
T Consensus 309 ~~~lG~v~~~~------~i~~~~~ 326 (457)
T 3tfu_A 309 YLSLAATLCTA------DVAHTIS 326 (457)
T ss_dssp SSCCEEEEEEH------HHHHHHH
T ss_pred CcceEEEEEcH------HHHHHhh
Confidence 6889999887 6767664
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-10 Score=115.34 Aligned_cols=209 Identities=13% Similarity=-0.005 Sum_probs=121.0
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc---
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~--- 190 (358)
.+|.|.+|+...+.+.. ..++... +..+ .....+++++++++.+.+ ..++++||++|+..++.++.+
T Consensus 68 ~~p~v~~A~~~~~~~~~-~~~~~~~--~~~~----~~~~la~~l~~~~~~~~~---~v~~~~gGseA~~~al~~~~~~~~ 137 (460)
T 3gju_A 68 GRQKIADAIATQAKNLA-YYHAYVG--HGTE----ASITLAKMIIDRAPKGMS---RVYFGLSGSDANETNIKLIWYYNN 137 (460)
T ss_dssp CCHHHHHHHHHHHHHHS-CCCCCTT--CCCH----HHHHHHHHHHHHSCTTEE---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc-ccccccc--cCCH----HHHHHHHHHHhhCCCCcC---EEEEeCchHHHHHHHHHHHHHHHH
Confidence 47899999887665421 1122111 1122 233355678888876553 235567899999999988763
Q ss_pred -----CCCEEEecCCCCCcccccccc-c---ch-hccccCCceEEEEeceec--CCCCCCC--------HHHHHHHhhh-
Q 018300 191 -----PHDRIMGLDLPHGGHLSHGFM-T---PK-RRVSGTSIYFESMPYRLD--ESTGLVD--------YDMLEKTAIL- 249 (358)
Q Consensus 191 -----pGD~Vl~~~~~~ggh~s~~~~-~---~~-~~~~~~g~~~~~~~~~~~--~~~~~iD--------~d~le~~i~~- 249 (358)
++|+|++.++.+.|+...... + .. .........+..++++.. ..+...| +++|++.+..
T Consensus 138 ~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~ 217 (460)
T 3gju_A 138 VLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAE 217 (460)
T ss_dssp HTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhc
Confidence 568999988765443210000 0 00 000001112333442221 0111122 6888888763
Q ss_pred --cCCeEEEEcCCCC--CCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCcc
Q 018300 250 --FRPKLIIAGASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG 318 (358)
Q Consensus 250 --~~~klIi~~~s~~--~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~G 318 (358)
.++++|++++.+. |...+ +++|+++|++||++||+|++|+ |+...|... ..++ ..|++++| |+|+|
T Consensus 218 ~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~s--K~l~g 294 (460)
T 3gju_A 218 GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVT-GFGRLGTMFGSDHYGIKPDLITIA--KGLTS 294 (460)
T ss_dssp CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHHTCCCSEEEEC--GGGTT
T ss_pred CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcccccchHhhcCCCCCeeeee--hhhcC
Confidence 3567888876442 33343 8999999999999999999987 442223110 0112 45777655 99976
Q ss_pred --CcEEEEEEeCCCCchhHHHHHHh
Q 018300 319 --PRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 319 --p~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
.+.|++++++ ++.+.+.
T Consensus 295 G~~~lg~v~~~~------~i~~~~~ 313 (460)
T 3gju_A 295 AYAPLSGVIVAD------RVWQVLV 313 (460)
T ss_dssp TSSCCEEEEEEH------HHHHHHH
T ss_pred CCCCeEEEEECH------HHHHHHh
Confidence 6778898887 5666664
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.6e-11 Score=115.82 Aligned_cols=197 Identities=16% Similarity=0.076 Sum_probs=116.8
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHH--hccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA--ILKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~a--ll~p 191 (358)
.+|.|.+++...+.... .+. | -.+ ++...+++++++++ +.+ ..++++||++|+..++.. .+.+
T Consensus 69 ~~p~v~~a~~~~~~~~~--~~~---~--~~~----~~~~l~~~l~~~~~-~~~---~v~~~~~g~ea~~~al~~ar~~~~ 133 (424)
T 2e7u_A 69 AHPKVLARVRETLERGL--TFG---A--PSP----LEVALAKKVKRAYP-FVD---LVRFVNSGTEATMSALRLARGYTG 133 (424)
T ss_dssp TCHHHHHHHHHHHHTCS--CCS---S--CCH----HHHHHHHHHHHHCT-TCC---EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCC--CCC---C--CCH----HHHHHHHHHHHhCC-CCC---EEEEeCCHHHHHHHHHHHHHHhhC
Confidence 58999999988775421 111 1 122 33345567888885 332 235567889999999885 2344
Q ss_pred CCEEEecCCCCCcccccccccchhc------cccCCce----EEEEeceecCCCCCCCHHHHHHHhhh--cCCeEEEEcC
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRR------VSGTSIY----FESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGA 259 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~------~~~~g~~----~~~~~~~~~~~~~~iD~d~le~~i~~--~~~klIi~~~ 259 (358)
+|+|++.++.+.|+........... ....|.. .+...++ ..|+++|++.++. .++++|++++
T Consensus 134 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~~~vi~ep 207 (424)
T 2e7u_A 134 RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLE------YNDPEGLREVLKRRGEEIAAIIFEP 207 (424)
T ss_dssp CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEEC------TTCHHHHHHHHHHHGGGEEEEEECS
T ss_pred CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCC------CCCHHHHHHHHHhCCCCEEEEEEeC
Confidence 5788887766554321100000000 0001110 0112221 2489999988864 3567888875
Q ss_pred CC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCcc-CcEEEEEEeCC
Q 018300 260 SA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKD 329 (358)
Q Consensus 260 s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~G-p~GG~I~~~~~ 329 (358)
.+ .|...+ +++|.++ ++||++||+|++|+ |+. .+... ..++ ..|++ |++|+|++ .+.|++++++
T Consensus 208 ~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~~-~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~~~~~~- 281 (424)
T 2e7u_A 208 VVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GFR-LAFGGATELLGLKPDLV--TLGKILGGGLPAAAYAGRR- 281 (424)
T ss_dssp SBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TTT-SSTTHHHHHHTCCCSEE--EECGGGGTTSSCEEEEECH-
T ss_pred CCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-ccc-cchhHHHHHhCCCcchh--hhhhhhhCCcceEEEEEcH-
Confidence 43 455667 9999999 99999999999998 763 22210 1112 46776 55699864 4789999886
Q ss_pred CCchhHHHHHHhh
Q 018300 330 PVLGVELESAINN 342 (358)
Q Consensus 330 ~~~~~~~~~~i~~ 342 (358)
++.+.+..
T Consensus 282 -----~~~~~~~~ 289 (424)
T 2e7u_A 282 -----EIMEKVAP 289 (424)
T ss_dssp -----HHHTTBTT
T ss_pred -----HHHhhhcc
Confidence 56555543
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.5e-10 Score=110.78 Aligned_cols=209 Identities=13% Similarity=0.013 Sum_probs=121.2
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc---
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~--- 190 (358)
.+|.|.+|+...+.. ...+++. .+..+ .....+++++++++.+.+ ..++++||++|+..++..+.+
T Consensus 71 ~~p~v~~A~~~~l~~-~~~~~~~---~~~~~----~~~~la~~l~~~~~~~~~---~v~~~~sGseA~~~Aik~a~~~~~ 139 (476)
T 3i5t_A 71 GRREIVDAMAHQAMV-LPYASPW---YMATS----PAARLAEKIATLTPGDLN---RIFFTTGGSTAVDSALRFSEFYNN 139 (476)
T ss_dssp CCHHHHHHHHHHHHH-CCCCCTT---TCBCH----HHHHHHHHHHTTSSTTCC---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-ccCcccC---ccCCH----HHHHHHHHHHhcCCCCcC---EEEEeCchHHHHHHHHHHHHHHHH
Confidence 489999999887654 2222221 11223 233355678888865543 245677899999999988753
Q ss_pred -----CCCEEEecCCCCCccccccc-ccchhc----cccCCceEEEEeceecCCCCCCC--------HHHHHHHhhh---
Q 018300 191 -----PHDRIMGLDLPHGGHLSHGF-MTPKRR----VSGTSIYFESMPYRLDESTGLVD--------YDMLEKTAIL--- 249 (358)
Q Consensus 191 -----pGD~Vl~~~~~~ggh~s~~~-~~~~~~----~~~~g~~~~~~~~~~~~~~~~iD--------~d~le~~i~~--- 249 (358)
.+++|++.++.+.|+..-.. .+.... .......+..++++........| +++|++.+..
T Consensus 140 ~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~ 219 (476)
T 3i5t_A 140 VLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGP 219 (476)
T ss_dssp HTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCG
T ss_pred hcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCC
Confidence 36789988876544321000 000000 00000112333332211110112 7888888763
Q ss_pred cCCeEEEEcCCCC--CCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCc-c-C-CCC-CCcEEEEcCcCcCcc-
Q 018300 250 FRPKLIIAGASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-D-PFK-YCDVVTTTTHKSLRG- 318 (358)
Q Consensus 250 ~~~klIi~~~s~~--~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~-~-pl~-gaDiv~~S~hK~L~G- 318 (358)
.++++|++++... |...+ +++|+++|+++|++||+|++|+ |+...|.. . . .++ ..|++++| |+|+|
T Consensus 220 ~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~-g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~~G 296 (476)
T 3i5t_A 220 DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVT-GFGRCGEWFASEKVFGVVPDIITFA--KGVTSG 296 (476)
T ss_dssp GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHTTCCCCSEEEEC--GGGGTT
T ss_pred CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccccCceeeecccCCCcchhhhh--hhhcCC
Confidence 3467888875432 33333 8999999999999999999987 44333321 1 1 222 46888765 99865
Q ss_pred -CcEEEEEEeCCCCchhHHHHHHhh
Q 018300 319 -PRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 319 -p~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
.+.|++++++ ++.+.+..
T Consensus 297 ~~plg~v~~~~------~i~~~~~~ 315 (476)
T 3i5t_A 297 YVPLGGLAISE------AVLARISG 315 (476)
T ss_dssp SSCCEEEEECH------HHHHTTSG
T ss_pred CcCeEEEEECH------HHHHHHhc
Confidence 5668888876 56666654
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.5e-10 Score=114.63 Aligned_cols=201 Identities=14% Similarity=0.031 Sum_probs=120.8
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc---
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~--- 190 (358)
.+|.|.+|+...+..-. ..+...+| ..+ .....+++++++++.+.+ ..++++||++|+..++..+..
T Consensus 72 ~~p~v~~A~~~~~~~~~-~~~~~~~~--~~~----~~~~lae~l~~~~~~~~~---~v~~~~sGseA~~~aik~a~~~~~ 141 (472)
T 3hmu_A 72 GRDELAEVAARQMRELP-YYNTFFKT--THV----PAIALAQKLAELAPGDLN---HVFFAGGGSEANDTNIRMVRTYWQ 141 (472)
T ss_dssp CCHHHHHHHHHHHHHCS-CCCSSSSE--ECH----HHHHHHHHHHHHSCTTEE---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc-cccccccc--CCH----HHHHHHHHHHHhCCCCCC---EEEEeCCHHHHHHHHHHHHHHHHH
Confidence 48999999987765421 12221111 122 223345668888876543 235667899999999988764
Q ss_pred -----CCCEEEecCCCCCcccccccccchhccccCCc-----------eEEEEecee--cCCCCCCC--------HHHHH
Q 018300 191 -----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-----------YFESMPYRL--DESTGLVD--------YDMLE 244 (358)
Q Consensus 191 -----pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-----------~~~~~~~~~--~~~~~~iD--------~d~le 244 (358)
++++|++.++.+.|+.. + .....+. .+..++++. +.... .| +++|+
T Consensus 142 ~~g~~~~~~ii~~~~~yHg~t~-~------~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le 213 (472)
T 3hmu_A 142 NKGQPEKTVIISRKNAYHGSTV-A------SSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELE 213 (472)
T ss_dssp HTTCTTCCEEEEETTCCCCSSH-H------HHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHH
T ss_pred hcCCCCCCEEEEEcCcCCCccH-H------hhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHH
Confidence 46789988765544311 0 1111110 123333222 10011 34 78888
Q ss_pred HHhhh---cCCeEEEEcCCC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcC
Q 018300 245 KTAIL---FRPKLIIAGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTT 312 (358)
Q Consensus 245 ~~i~~---~~~klIi~~~s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~ 312 (358)
+.++. .++++|++++.+ .|...+ +++|+++|+++|++||+|++|+ |+...|... ..++ ..|++++|
T Consensus 214 ~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~a~~~~~v~pdi~t~s- 291 (472)
T 3hmu_A 214 EAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVIC-GFGRTGNWFGTQTMGIRPHIMTIA- 291 (472)
T ss_dssp HHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHHTCCCSEEEEC-
T ss_pred HHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-CCcccCccchhHHhCCCCceeeec-
Confidence 88763 345778887543 234444 8999999999999999999987 443223210 0112 45888765
Q ss_pred cCcCcc--CcEEEEEEeCCCCchhHHHHHHh
Q 018300 313 HKSLRG--PRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 313 hK~L~G--p~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
|+|+| .+.|++++++ ++.+.++
T Consensus 292 -K~l~gg~~plG~v~~~~------~i~~~~~ 315 (472)
T 3hmu_A 292 -KGLSSGYAPIGGSIVCD------EVAHVIG 315 (472)
T ss_dssp -GGGTTTSSCCEEEEEEH------HHHHHHT
T ss_pred -hhhhcCCcceEEEEECH------HHHHhcc
Confidence 99976 6778888887 6777663
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.19 E-value=5.1e-10 Score=111.39 Aligned_cols=202 Identities=12% Similarity=0.002 Sum_probs=110.6
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhcc--C
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--P 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~--p 191 (358)
.+|.|.+++...+... . .+....+ ..+ .....+++++++++.+..+ ..++++||++|+..++..... .
T Consensus 78 ~~p~v~~A~~~~~~~~-~-~~~~~~~--~~~----~~~~la~~l~~~~~~~~~~--~v~~~~sGseA~~~Alk~a~~~~g 147 (451)
T 3oks_A 78 SAPKVVEAVRSQVGDF-T-HTCFMVT--PYE----GYVAVCEQLNRLTPVRGDK--RSALFNSGSEAVENAVKIARSHTH 147 (451)
T ss_dssp TCHHHHHHHHHHHTTC-S-CCTTTTS--CCH----HHHHHHHHHHHHSSCCSSE--EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhc-c-cccCCcc--CCH----HHHHHHHHHHHhCCcCCCC--EEEEeCcHHHHHHHHHHHHHHhcC
Confidence 4899999998776432 1 1111111 122 2333566788888754211 245677899999999977643 4
Q ss_pred CCEEEecCCCCCcccccccc-c----ch-hccccCCceEEEEecee---------cCCC-CCCCHHHHHHHhhh----cC
Q 018300 192 HDRIMGLDLPHGGHLSHGFM-T----PK-RRVSGTSIYFESMPYRL---------DEST-GLVDYDMLEKTAIL----FR 251 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~-~----~~-~~~~~~g~~~~~~~~~~---------~~~~-~~iD~d~le~~i~~----~~ 251 (358)
+++|++.+..+.|+...... + .. .........+..++++. +++. +..+++.+++.++. .+
T Consensus 148 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (451)
T 3oks_A 148 KPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADN 227 (451)
T ss_dssp CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGG
T ss_pred CCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCC
Confidence 58888887665543210000 0 00 00000011233444331 1000 01134444444432 34
Q ss_pred CeEEEEcCCC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCc-cCcE
Q 018300 252 PKLIIAGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRG 321 (358)
Q Consensus 252 ~klIi~~~s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~-Gp~G 321 (358)
+++|++++.+ .|...+ +++|+++|++||++||+|++|. |+...|... ..++ ..|++++ .|+|. |.+.
T Consensus 228 ~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~t~--sK~l~~G~~i 304 (451)
T 3oks_A 228 LAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQT-GFARTGAMFACEHEGIDPDLIVT--AKGIAGGLPL 304 (451)
T ss_dssp EEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTSSC
T ss_pred EEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-CCCccccchhhhhcCCCCCeeee--hhhhhCCcce
Confidence 5677776533 233333 9999999999999999999987 543333211 1112 4577755 49984 5577
Q ss_pred EEEEEeC
Q 018300 322 GMIFFKK 328 (358)
Q Consensus 322 G~I~~~~ 328 (358)
|++++++
T Consensus 305 G~v~~~~ 311 (451)
T 3oks_A 305 SAVTGRA 311 (451)
T ss_dssp EEEEEEH
T ss_pred EEEEECH
Confidence 8888876
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=115.75 Aligned_cols=191 Identities=10% Similarity=-0.002 Sum_probs=111.4
Q ss_pred CcHHHH-H-HHhh---hhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcC-CCCCCCcceEEeCCCHHHHHHHHHH
Q 018300 114 TSRAVM-E-AVGS---CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLSGSPANFEVYTA 187 (358)
Q Consensus 114 ~s~~V~-~-al~~---~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg-~~~~~~~v~V~~~SGt~A~~~a~~a 187 (358)
.+|.|. + |+.. .+... . +.+.+| ..+... ..+++++++++ .+.+ ..++++||++|+..++..
T Consensus 71 ~~p~v~~~~A~~~~~~~~~~~-~--~~~~~~--~~~~~~----~la~~la~~~~~~~~~---~v~~~~~gseA~~~aik~ 138 (449)
T 2cjg_A 71 NPPALVDDREFHAELMQAALN-K--PSNSDV--YSVAMA----RFVETFARVLGDPALP---HLFFVEGGALAVENALKA 138 (449)
T ss_dssp SCHHHHTCHHHHHHHHHHHTC-C--CCTTTC--CCHHHH----HHHHHHHHHHCCTTCC---EEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhc-C--CCCccc--CCHHHH----HHHHHHHHhcCCCCCC---EEEEeCchHHHHHHHHHH
Confidence 488999 8 8887 44322 1 111112 223222 24456888887 3332 235567889999999875
Q ss_pred hc---c-----------CCCEEEecCCCCCcccccccccchhccccCCc------e-----EEEEeceecC--CCC----
Q 018300 188 IL---K-----------PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------Y-----FESMPYRLDE--STG---- 236 (358)
Q Consensus 188 ll---~-----------pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------~-----~~~~~~~~~~--~~~---- 236 (358)
+. + +||+|++.++.+.|+.... +...+. . ..+..++.+. ...
T Consensus 139 a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 211 (449)
T 2cjg_A 139 AFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYT-------LSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMA 211 (449)
T ss_dssp HHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTG-------GGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHH
T ss_pred HHHHhcccccccccccCCCCEEEEECCCcCCcccch-------hhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccc
Confidence 42 2 2899999987665542211 111110 0 0223333331 000
Q ss_pred ---CCCHHHHHHHhhh--cCCeEEEEcCCC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC
Q 018300 237 ---LVDYDMLEKTAIL--FRPKLIIAGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK 303 (358)
Q Consensus 237 ---~iD~d~le~~i~~--~~~klIi~~~s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~ 303 (358)
..|+++|++.++. .++++|++++.+ .|...+ +++|.++|+++|++|++|++|+ |+...|... ..++
T Consensus 212 ~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~~~~~~~~ 290 (449)
T 2cjg_A 212 ALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT-GCGLTGTAWAYQQLD 290 (449)
T ss_dssp HHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSTHHHHT
T ss_pred hhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEecccc-CCCccCcceeecccC
Confidence 2456778888853 357888887643 354455 9999999999999999999998 543333211 1112
Q ss_pred -CCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 304 -YCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 304 -gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
..|++++| |+| | .|+++++++
T Consensus 291 ~~~di~t~s--K~l--~-iG~~~~~~~ 312 (449)
T 2cjg_A 291 VAPDIVAFG--KKT--Q-VCGVMAGRR 312 (449)
T ss_dssp CCCSEEEEC--GGG--S-SEEEEECGG
T ss_pred CCceEEEec--Ccc--c-EEEEEECHH
Confidence 46777654 998 4 566777663
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.3e-10 Score=110.82 Aligned_cols=208 Identities=15% Similarity=0.013 Sum_probs=114.6
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc--cC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--~p 191 (358)
.+|.|.+|+...+.... .+....+ -.+ .....+++++++++.+..+ ..++++||++|+..++.... ..
T Consensus 81 ~~p~v~~A~~~~~~~~~--~~~~~~~--~~~----~~~~la~~l~~~~~~~~~~--~v~~~~sGseA~~~alk~a~~~~g 150 (453)
T 4ffc_A 81 SHPAVAAAIADQATHFT--HTCFMVT--PYE----QYVQVAELLNALTPGDHDK--RTALFNSGAEAVENAIKVARLATG 150 (453)
T ss_dssp TCHHHHHHHHHHHHHCS--CCTTTTS--CCH----HHHHHHHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcc--ccccCcC--CCH----HHHHHHHHHHHhCCCCCCc--EEEEeCcHHHHHHHHHHHHHHhcC
Confidence 48999999988765421 1211111 122 2333566788898754211 24567789999999997654 35
Q ss_pred CCEEEecCCCCCcccccccc-c----ch-hccccCCceEEEEeceecCCC-CCCC--------HHHHHHHhhhcCCeEEE
Q 018300 192 HDRIMGLDLPHGGHLSHGFM-T----PK-RRVSGTSIYFESMPYRLDEST-GLVD--------YDMLEKTAILFRPKLII 256 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~-~----~~-~~~~~~g~~~~~~~~~~~~~~-~~iD--------~d~le~~i~~~~~klIi 256 (358)
+++|++.++.+.|+...... + .. .........+..++++....+ ...+ .+.|++.+...++.+|+
T Consensus 151 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi 230 (453)
T 4ffc_A 151 RPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAII 230 (453)
T ss_dssp CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred CCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 68899887665443210000 0 00 000000112334444321100 0112 35556555433456777
Q ss_pred EcCCC--CCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCccCCC---C-CCcEEEEcCcCcCc-cCcEEEEE
Q 018300 257 AGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSLR-GPRGGMIF 325 (358)
Q Consensus 257 ~~~s~--~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~-gaDiv~~S~hK~L~-Gp~GG~I~ 325 (358)
+++.+ .|...+ +++|+++|++||++||+|++|. |+...|.. ..+ + ..|++++| |++. |.+.|+++
T Consensus 231 ~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~g~~g~~-~a~~~~~~~pdi~t~s--K~~~~G~~~G~~~ 306 (453)
T 4ffc_A 231 IEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQT-GFARTGAW-FASEHEGIVPDIVTMA--KGIAGGMPLSAVT 306 (453)
T ss_dssp ECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-STHHHHTCCCSEEEEC--GGGGTTSSCEEEE
T ss_pred EcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCcc-CCCccccc-chhhhcCCCcchHhhh--hhhcCCcCeEEEE
Confidence 76533 233333 8999999999999999999986 44322321 111 1 35777655 9984 56778888
Q ss_pred EeCCCCchhHHHHHHh
Q 018300 326 FKKDPVLGVELESAIN 341 (358)
Q Consensus 326 ~~~~~~~~~~~~~~i~ 341 (358)
+++ ++.+.+.
T Consensus 307 ~~~------~i~~~~~ 316 (453)
T 4ffc_A 307 GRA------ELMDAVY 316 (453)
T ss_dssp EEH------HHHTTSC
T ss_pred ECH------HHHhhhc
Confidence 877 5555444
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.3e-09 Score=106.24 Aligned_cols=195 Identities=19% Similarity=0.137 Sum_probs=112.2
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~p 191 (358)
-+|.|.+|+.+.+......+. -+. ++....+++++++..-. ...+++|||+|+..++... ...
T Consensus 104 ~hp~v~~Av~~q~~~~~~~~~-------~~~----~~~~lae~l~~~~p~~~----~v~f~~SGsEA~e~AiklAr~~tg 168 (454)
T 4ao9_A 104 SAPEIRDAVIEAMQGGINLTG-------HNL----LEGRLARLICERFPQIE----QLRFTNSGTEANLMALTAALHFTG 168 (454)
T ss_dssp CCHHHHHHHHHHHHTCSCCCS-------EES----SHHHHHHHHHHHSTTCS----EEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcCCCccC-------CcH----HHHHHHHHHHHhCCCCC----EEEEeCchHHHHHHHHHHHHhccc
Confidence 479999998877654322111 112 22234455777775322 2356689999999999764 234
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcC--CeEEEEcC--CCCCCCCC
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR--PKLIIAGA--SAYPRDFD 267 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~--~klIi~~~--s~~~~~~d 267 (358)
.++|+..+-.|.|+.. +... ...-....+....++ .-|.+.+++.++++. ...|++++ .+.|...+
T Consensus 169 r~~ii~~~~~yHG~t~-~~~~---~~~~~~~~~~~~~~p------~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p 238 (454)
T 4ao9_A 169 RRKIVVFSGGYHGGVL-GFGA---RPSPTTVPFDFLVLP------YNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPG 238 (454)
T ss_dssp CCEEEEETTCBCSTTC-BBSS---SBCTTSCCSEEEEEC------TTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEEC
T ss_pred CCeEEEEeCCcCCccc-cccc---cccCccCCCCcccCC------CchHHHHHHHHhhcCCceEEEEeccccCCCCccCC
Confidence 5678877644433211 1100 000011112222222 237889998887643 34677764 23444433
Q ss_pred ----HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCcCcc-CcEEEEEEeCCCCchhHHHHHHh
Q 018300 268 ----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 268 ----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~G-p~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
+++|+++|++||++||+|+.|+ |-...+....-++ ..|+++++ |.++| ...|.+.+++ ++.+.++
T Consensus 239 ~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~------ei~~~~~ 309 (454)
T 4ao9_A 239 QPDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRA------DVMALFD 309 (454)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECH------HHHGGGC
T ss_pred chhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEEec--cccCCCCcceeeeeHH------HHHHHHh
Confidence 8999999999999999999997 6432211111112 35888665 88854 4557777777 5666554
Q ss_pred h
Q 018300 342 N 342 (358)
Q Consensus 342 ~ 342 (358)
.
T Consensus 310 ~ 310 (454)
T 4ao9_A 310 P 310 (454)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=5.5e-11 Score=119.56 Aligned_cols=184 Identities=18% Similarity=0.114 Sum_probs=110.5
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHc-CCCCCCCcceEEeCCCHHHHHHHHHHh--cc
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lf-g~~~~~~~v~V~~~SGt~A~~~a~~al--l~ 190 (358)
.+|.|.+|+...+......+|+ ++ .+...++++++++ +.+. .++++||++|+..++... ..
T Consensus 117 ~~p~V~~Av~~q~~~~~~~~~~-------~~----~~~~Lae~L~~~~p~~~~-----v~~~nSGseA~~~Aik~ar~~t 180 (465)
T 2yky_A 117 SHPVIRAAVERALAVGLNLSTQ-------TE----NEALFAEAVCDRFPSIDL-----VRFTNSGTEANLMALATATAIT 180 (465)
Confidence 3789999987766542211111 12 2233455677888 4432 356789999999998764 34
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh--cCCeEEEEcCC--CCCCCC
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGAS--AYPRDF 266 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~--~~~klIi~~~s--~~~~~~ 266 (358)
.+|+|++.+..+.|+.. +... .....|.....+.++ ..|+++|++.++. .++++|++++. +.|...
T Consensus 181 gr~~ii~~~~~yHG~~~-~~~s---g~~~~g~~~~~~~~~------~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~ 250 (465)
T 2yky_A 181 GRKTVLAFDGGYHGGLL-NFAS---GHAPTNAPYHVVLGV------YNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVP 250 (465)
Confidence 56899988765544311 1000 000111100122222 2378888888763 36788888653 245444
Q ss_pred C----HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC----CCcEEEEcCcCcCcc-CcEEEEEEeCC
Q 018300 267 D----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLRG-PRGGMIFFKKD 329 (358)
Q Consensus 267 d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~----gaDiv~~S~hK~L~G-p~GG~I~~~~~ 329 (358)
+ +++|+++|+++|++||+|++|+ + .. +. ...++ ..|++ |+.|+++| .+.|+++++++
T Consensus 251 ~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~-g~-~~a~~~~gv~pDi~--t~sK~lg~G~piG~v~~~~~ 316 (465)
T 2yky_A 251 AERAFLDLLRAEASRCGALLIFDEVMT-S-RL-SG-GGAQEMLGISADLT--TLGKYIGGGMSFGAFGGRRD 316 (465)
Confidence 4 8999999999999999999998 5 22 21 11122 35665 56799864 56688888874
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=8.4e-10 Score=107.71 Aligned_cols=150 Identities=15% Similarity=0.044 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCCC----EEEecCCCCCcccccccccchhccccCCc
Q 018300 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (358)
Q Consensus 148 ~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD----~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (358)
++++.+.+++. ..|.+... ..+|.+++|+ +|+..++.++++||| +|++.++.|.++.. .+...|.
T Consensus 72 ~lr~aia~~~~-~~g~~~~~-~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~--------~~~~~g~ 141 (391)
T 3bwn_A 72 ELEDAIKDLHG-VVGNAATE-DRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVE--------ETTYVRS 141 (391)
T ss_dssp HHHHHHHHHHH-HHCSBCCS-SSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHH--------HHHTTCB
T ss_pred HHHHHHHHHHH-hcCCCCCC-CCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHH--------HHHHcCC
Confidence 45555444443 33433210 0146666665 599999999999999 99999987766432 2334555
Q ss_pred eEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCCHHHHHHHHHHcCCEEEEeccccccccccCCccC
Q 018300 223 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300 (358)
Q Consensus 223 ~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~ 300 (358)
.+ ++++++.+ .++ ..++|+|++..++||+ ..+ +|++.++++++++++|++|+.+ . ..
T Consensus 142 ~~--~~~~~d~~--~l~---------~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~----~--~~ 200 (391)
T 3bwn_A 142 GM--YKWEGDAW--GFD---------KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWP----H--YT 200 (391)
T ss_dssp TT--EEEEEEST--TCC---------CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCST----T--TS
T ss_pred eE--EEecCCHH--HcC---------CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCC----C--CC
Confidence 33 34445532 122 1368988777666654 443 4544222233999999998732 1 12
Q ss_pred CCC---CCcEEEEcCcCcC--ccCcEEEEEE-eC
Q 018300 301 PFK---YCDVVTTTTHKSL--RGPRGGMIFF-KK 328 (358)
Q Consensus 301 pl~---gaDiv~~S~hK~L--~Gp~GG~I~~-~~ 328 (358)
++. +.++++.|+||++ +|.|.|+++. ++
T Consensus 201 ~l~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~ 234 (391)
T 3bwn_A 201 PITRRQDHDIMLFTFSKITGHAGSRIGWALVKDK 234 (391)
T ss_dssp CCCCCBCCSEEEEEHHHHHSCGGGCEEEEEECCH
T ss_pred ccccCCCCeEEEEechhhcCCCccceEEEEecCH
Confidence 222 5679999999986 5778899997 54
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.7e-09 Score=105.26 Aligned_cols=190 Identities=15% Similarity=0.175 Sum_probs=109.5
Q ss_pred CcHHHHHHHhhhhhcc-cCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc---
Q 018300 114 TSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~-~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--- 189 (358)
.+|.|.+|+...+... +..+ + . ++ .....++++.+.++++++++...+ ..++++||++||..++..+.
T Consensus 80 ~~p~v~~A~~~~~~~~~~~~~-~--~-~~-~~~~~~l~~~la~~l~~~~~~~~~---~v~f~~sGseA~~~Aik~a~~~~ 151 (472)
T 1ohv_A 80 SHPALVKLVQQPQNVSTFINR-P--A-LG-ILPPENFVEKLRESLLSVAPKGMS---QLITMACGSCSNENAFKTIFMWY 151 (472)
T ss_dssp TCHHHHHHHHCGGGHHHHHCC-C--C-TT-TSCBTTHHHHHHHTGGGGCCTTCC---EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcccccc-c--c-cc-cccHHHHHHHHHHHHHHhCCCCcC---EEEEeCCchhHHHHHHHHHHHHh
Confidence 4899999998764321 1111 1 1 11 111124555555556666644332 24567899999999997763
Q ss_pred ----c------------------CC---CEEEecCCCCCcccccccccchhccccCCce-----------EEEEeceec-
Q 018300 190 ----K------------------PH---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----------FESMPYRLD- 232 (358)
Q Consensus 190 ----~------------------pG---D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-----------~~~~~~~~~- 232 (358)
+ || |+|++.+..+.|+.. + .....+.. +..++++..
T Consensus 152 ~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~-~------~~~~~g~~~~~~~~~~~~~~~~~~~p~~~ 224 (472)
T 1ohv_A 152 RSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTM-G------CLATTHSKAIHKIDIPSFDWPIAPFPRLK 224 (472)
T ss_dssp HHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSH-H------HHHHCCSCHHHHTTSCCCCCCEECCCCCC
T ss_pred hhhccCcccccccccccccccccccCCCCeEEEECCCcccccH-H------HHhcCCCccccccCCCCCCCcccCCCccc
Confidence 1 56 899998865544321 1 11111110 011122110
Q ss_pred -CCC---------CCCCHHHHHHHhhhc-----CCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEecccccc
Q 018300 233 -EST---------GLVDYDMLEKTAILF-----RPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISG 291 (358)
Q Consensus 233 -~~~---------~~iD~d~le~~i~~~-----~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~G 291 (358)
+.. ...|+++|++.++.. ++++|++++. +.|...+ +++|+++|+++|++||+|++|+ |
T Consensus 225 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g 303 (472)
T 1ohv_A 225 YPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQT-G 303 (472)
T ss_dssp SSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTT-T
T ss_pred CccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCccc-C
Confidence 000 023688899888652 6788888653 3465666 9999999999999999999997 4
Q ss_pred ccccCCccCCCC--C----CcEEEEcCcCc-CccCcEEEEE
Q 018300 292 LVAASVVADPFK--Y----CDVVTTTTHKS-LRGPRGGMIF 325 (358)
Q Consensus 292 l~~~g~~~~pl~--g----aDiv~~S~hK~-L~Gp~GG~I~ 325 (358)
+...|.. ..++ + .|++++| |+ ++ ||+++
T Consensus 304 ~g~~g~~-~~~~~~gv~~~~Di~t~s--K~~l~---GG~~~ 338 (472)
T 1ohv_A 304 GGSTGKF-WAHEHWGLDDPADVMTFS--KKMMT---GGFFH 338 (472)
T ss_dssp TTTTSSS-SGGGGGCCSSCCSEEEEC--GGGSS---EEEEE
T ss_pred CCCCCCc-hhccccCCCCCCCEEEEc--ccccc---CCccC
Confidence 3333321 0111 2 7887665 98 55 47776
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-09 Score=107.99 Aligned_cols=158 Identities=12% Similarity=0.014 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHcC--CCCCCCcceEEeCCC-HHHHHHHHHHh--------ccCCCEEEecCCCCCcccccccccchh
Q 018300 147 DELETLCQKRALAAFN--LDENKWGVNVQPLSG-SPANFEVYTAI--------LKPHDRIMGLDLPHGGHLSHGFMTPKR 215 (358)
Q Consensus 147 ~~lE~~~~~~la~lfg--~~~~~~~v~V~~~SG-t~A~~~a~~al--------l~pGD~Vl~~~~~~ggh~s~~~~~~~~ 215 (358)
.++++.+++++.+..+ ++++ +|.+++| ++|+..++.++ ++|||+|+++++.|.++..
T Consensus 103 ~~lr~aia~~~~~~~~~~~~~~----~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~-------- 170 (427)
T 2hox_A 103 FELEKTIKELHEVVGNAAAKDR----YIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFRE-------- 170 (427)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTC----EEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHH--------
T ss_pred HHHHHHHHHHHHHhCCcCCCCC----EEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHH--------
Confidence 3567666665555433 3443 4555555 56999999999 9999999999987655422
Q ss_pred ccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEecccccccc
Q 018300 216 RVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLV 293 (358)
Q Consensus 216 ~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~ 293 (358)
.+...|..+ +.+ .+|+++|++.+.. ++|+|++..+++| ...+ + +++ ++..++|.++.-..
T Consensus 171 ~~~~~g~~~--~~~-------~~d~~~l~~~~~~-~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~- 232 (427)
T 2hox_A 171 QTKYFDKKG--YVW-------AGNAANYVNVSNP-EQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPH- 232 (427)
T ss_dssp HHHHSCBTT--EEE-------EEEGGGGTTCSCG-GGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTT-
T ss_pred HHHHcCCee--eee-------cCCHHHHHHhhcC-CceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCC-
Confidence 223344422 222 3466777776653 6788877666655 4566 3 233 56788898764210
Q ss_pred ccCCccCCCC-CCcEEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 294 AASVVADPFK-YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 294 ~~g~~~~pl~-gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
.-...++ +.+++++|+||++ +|.|.|+++++++ ++.+++..
T Consensus 233 ---~s~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~-----~l~~~l~~ 276 (427)
T 2hox_A 233 ---YTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDE-----SVYNNLLN 276 (427)
T ss_dssp ---TSCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCH-----HHHHHHHH
T ss_pred ---CCccccCCCceEEEEeChhcCCCCCceEEEEEECCH-----HHHHHHHH
Confidence 0001222 5789999999986 5677899999543 45555443
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.4e-05 Score=77.16 Aligned_cols=201 Identities=16% Similarity=0.059 Sum_probs=102.6
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~p 191 (358)
-+|.|.+|+.+.+.. .... . .+....+. +....+++.+++..+..+ ..++++|||+|+..++... ...
T Consensus 81 ~~p~v~~Ai~~q~~~-~~~~--~-~~~~~~~~----~~~lae~L~~~~p~~~~~--~v~f~~sGsEA~e~AlklAr~~t~ 150 (456)
T 4atq_A 81 SDPAVVAAVQEAAAH-FTHT--C-FMVTPYEG----YVAVTEQLNRLTPGDHAK--RTVLFNSGAEAVENAVKVARLATG 150 (456)
T ss_dssp TCHHHHHHHHHHHHH-CSCC--T-TTTSCCHH----HHHHHHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhh-ccCc--c-cCccCcHH----HHHHHHHHHHhCCCCCCc--EEEEeCChHHHHHHHHHHHhhhhc
Confidence 478898888766543 2111 1 01111221 112345677787654321 2356789999999999643 334
Q ss_pred CCEEEecCCCCCcccccccc--cchh---cccc--CCceEEEEecee--cCCC-CCCCHHHHHHHh-------hhcCCeE
Q 018300 192 HDRIMGLDLPHGGHLSHGFM--TPKR---RVSG--TSIYFESMPYRL--DEST-GLVDYDMLEKTA-------ILFRPKL 254 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~--~~~~---~~~~--~g~~~~~~~~~~--~~~~-~~iD~d~le~~i-------~~~~~kl 254 (358)
.++|+.....|.|.-. +.. +... .... ....+..++++. .... ...+.+.+++.+ ...++..
T Consensus 151 r~~ii~~~~~yHG~t~-~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAA 229 (456)
T 4atq_A 151 RDAVVAFDHAYHGRTN-LTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAA 229 (456)
T ss_dssp CCEEEEETTCCCCSSH-HHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEE
T ss_pred CCeEEEEecccCCccc-cccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEE
Confidence 5688887644433210 000 0000 0000 001122233322 1111 122333333322 2224566
Q ss_pred EEEcCC--CCCCC----CCHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCcc-CcEEEE
Q 018300 255 IIAGAS--AYPRD----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PRGGMI 324 (358)
Q Consensus 255 Ii~~~s--~~~~~----~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~G-p~GG~I 324 (358)
|++++- +.|.. .-+++++++|++||++||+|+.|+ |+.-.|..- ..++ ..|+++++ |.++| ..-|.+
T Consensus 230 vivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~t-G~GRtG~~~a~e~~gv~PDivt~g--K~lggg~P~~av 306 (456)
T 4atq_A 230 IIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQS-GFCRTGEWFAVDHEGVVPDIITMA--KGIAGGLPLSAI 306 (456)
T ss_dssp EEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCEEE
T ss_pred EEeccccCCCCccccchhhhHHHHHHHhhcCCceEeccccc-ccCCccccccccccCCCCchhhhh--hcccCcCCceee
Confidence 777652 22322 238999999999999999999987 543233211 1122 46999877 88744 344667
Q ss_pred EEeC
Q 018300 325 FFKK 328 (358)
Q Consensus 325 ~~~~ 328 (358)
++++
T Consensus 307 ~~~~ 310 (456)
T 4atq_A 307 TGRA 310 (456)
T ss_dssp EEEH
T ss_pred EecH
Confidence 7776
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=98.00 E-value=5.3e-05 Score=76.07 Aligned_cols=201 Identities=15% Similarity=0.106 Sum_probs=106.1
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCC-cHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc---
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G-~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--- 189 (358)
-+|.|.+|+...+..-.. + ..+++. ++ .+....+++.+++..+.+ ...+.+|||+|+..++....
T Consensus 84 ~~p~v~~Ai~~q~~~l~~--~--~~~~~~~~~----~~~~lAe~L~~~~p~~~~---~v~f~~sGsEA~e~AiKlAr~~~ 152 (473)
T 4e3q_A 84 DHKGLIDAAKAQYERFPG--Y--HAFFGRMSD----QTVMLSEKLVEVSPFDSG---RVFYTNSGSEANDTMVKMLWFLH 152 (473)
T ss_dssp CCHHHHHHHHHHHHHCCC--C--CCCTTEEEH----HHHHHHHHHHHHSSCSSC---EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccc--c--cccccccCH----HHHHHHHHHHhhCCCCcc---EEEEeCchHHHHHHHHHHHHHHH
Confidence 478999998776653211 1 011211 22 122245667888765432 23566899999999987532
Q ss_pred ----cCC-CEEEecCCCCCcccccccccchhccccCCc-----------eEEEEece----ecCCCCCC-------CHHH
Q 018300 190 ----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-----------YFESMPYR----LDESTGLV-------DYDM 242 (358)
Q Consensus 190 ----~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-----------~~~~~~~~----~~~~~~~i-------D~d~ 242 (358)
+++ .+|+...-.|.|. ... .+...+. .+..++++ ..+ .+.. ..++
T Consensus 153 ~~~g~~~r~~ii~~~~~yHG~-----t~~--a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~ 224 (473)
T 4e3q_A 153 AAEGKPQKRKILTRWNAYHGV-----TAV--SASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGE-EGETEEQFVARLARE 224 (473)
T ss_dssp HHTTCTTCCEEEEETTCCCCS-----SHH--HHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSC-TTCCHHHHHHHHHHH
T ss_pred HhcCCCCcceEEEeeceECCC-----ccc--cccccccccccccCCCCCcccccCCCccccccc-ccchhhHHHHHHHHH
Confidence 233 4677765433331 100 0111110 11222221 111 1111 1234
Q ss_pred HHHHhhhc---CCeEEEEcCC--CCCCC----CCHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEE
Q 018300 243 LEKTAILF---RPKLIIAGAS--AYPRD----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTT 310 (358)
Q Consensus 243 le~~i~~~---~~klIi~~~s--~~~~~----~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~ 310 (358)
+++.+... ++..|++++- +.|.. .-+++|+++|+++|++||.|+.++ |+.-.|... .-++ ..|++++
T Consensus 225 l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~t-GfGRtG~~fa~e~~gv~PDi~t~ 303 (473)
T 4e3q_A 225 LEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVIC-GFGRTGNTWGCVTYDFTPDAIIS 303 (473)
T ss_dssp HHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTT-SSSTTSSSCHHHHTTCCCSEEEE
T ss_pred HHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccc-cCCcccchhHHHhcCCCCChHHh
Confidence 55555432 2446676642 23332 228999999999999999999987 542223211 1122 4689876
Q ss_pred cCcCcCcc--CcEEEEEEeCCCCchhHHHHHHhh
Q 018300 311 TTHKSLRG--PRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 311 S~hK~L~G--p~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
+ |.|.| ..-|.+++++ ++.+.+..
T Consensus 304 ~--K~l~gG~~Pl~av~~~~------~i~~~~~~ 329 (473)
T 4e3q_A 304 S--KNLTAGFFPMGAVILGP------ELSKRLET 329 (473)
T ss_dssp C--GGGGTTSSCCEEEEECH------HHHHHHHH
T ss_pred c--ccccCCCCCcccccccH------HHHHHhcc
Confidence 6 98854 4567777776 56666644
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00018 Score=76.98 Aligned_cols=91 Identities=12% Similarity=0.038 Sum_probs=56.7
Q ss_pred HHHHHHhhh-------cCCeEEEEcCC--CC-CCCC-C---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC---
Q 018300 241 DMLEKTAIL-------FRPKLIIAGAS--AY-PRDF-D---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--- 303 (358)
Q Consensus 241 d~le~~i~~-------~~~klIi~~~s--~~-~~~~-d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--- 303 (358)
++|++.++. .++.+|++++. .. |... + +++|+++|++||++||+|++|. |+.-.|... ..+
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~t-GfGRtG~~f-a~e~~g 654 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFT-GFWRLGVET-TTELLG 654 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTT-TTTTTSBSS-THHHHS
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCcc-ccccCCCch-hhHhcC
Confidence 567776642 23457777653 22 3322 2 8999999999999999999976 443233211 111
Q ss_pred -CCcEEEEcCcCcCcc--CcEEEEEEeCCCCchhHHHHHHh
Q 018300 304 -YCDVVTTTTHKSLRG--PRGGMIFFKKDPVLGVELESAIN 341 (358)
Q Consensus 304 -gaDiv~~S~hK~L~G--p~GG~I~~~~~~~~~~~~~~~i~ 341 (358)
..|+++ +.|.|+| .+-|++++++ ++.+.+.
T Consensus 655 v~PDiit--lsK~L~gG~~Plgav~~~~------~i~~~~~ 687 (831)
T 4a0g_A 655 CKPDIAC--FAKLLTGGMVPLAVTLATD------AVFDSFS 687 (831)
T ss_dssp SCCSEEE--ECGGGGTTSSCCEEEEECH------HHHHTTC
T ss_pred CCCcEEE--EecccccCccCcEEEEECH------HHHHHHh
Confidence 358875 5599965 2557888877 5655443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 358 | ||||
| d1rv3a_ | 470 | c.67.1.4 (A:) Serine hydroxymethyltransferase {Rab | 1e-108 | |
| d2a7va1 | 463 | c.67.1.4 (A:26-488) Serine hydroxymethyltransferas | 1e-107 | |
| d1dfoa_ | 416 | c.67.1.4 (A:) Serine hydroxymethyltransferase {Esc | 5e-99 | |
| d1kl1a_ | 405 | c.67.1.4 (A:) Serine hydroxymethyltransferase {Bac | 1e-98 | |
| d1c4ka2 | 462 | c.67.1.5 (A:108-569) Ornithine decarboxylase major | 2e-28 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 7e-25 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 2e-22 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 4e-17 | |
| d1m6sa_ | 343 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 1e-04 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 3e-04 |
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 470 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 322 bits (826), Expect = e-108
Identities = 179/282 (63%), Positives = 212/282 (75%), Gaps = 9/282 (3%)
Query: 77 SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPG 136
+ L ++D EV +II KE RQ LELIASENF SRAV+EA+GSCL NKYS G PG
Sbjct: 6 QMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPG 65
Query: 137 KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIM 196
+RYYGG E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIM
Sbjct: 66 QRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIM 125
Query: 197 GLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 256
GLDLP GGHL+HGFMT K+++S TSI+FESM Y+++ TG +DYD LE+ A LF PKLII
Sbjct: 126 GLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLII 185
Query: 257 AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL 316
AG S Y R+ DY R+R+IAD GA LM DMAHISGLV A VV PF++C VVTTTTHK+L
Sbjct: 186 AGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTL 245
Query: 317 RGPRGGMIFFKKD---------PVLGVELESAINNAVFPGLQ 349
RG R GMIF+++ + LES IN+AVFPGLQ
Sbjct: 246 RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQ 287
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 463 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Score = 319 bits (819), Expect = e-107
Identities = 178/277 (64%), Positives = 217/277 (78%), Gaps = 9/277 (3%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
SL ++DPE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYG
Sbjct: 7 SLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYG 66
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G E +DE+E LCQ+RAL AF+LD +WGVNVQP SGSPAN VYTA+L+PHDRIMGLDLP
Sbjct: 67 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLP 126
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
GGHL+HG+M+ +R+S TSI+FESMPY+L+ TGL+DY+ L TA LFRP+LIIAG SA
Sbjct: 127 DGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA 186
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y R DY RMR++ D V A L+ DMAHISGLVAA V+ PFK+ D+VTTTTHK+LRG R
Sbjct: 187 YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS 246
Query: 322 GMIFFKK-----DPVLGVEL----ESAINNAVFPGLQ 349
G+IF++K DP G E+ E IN AVFP LQ
Sbjct: 247 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQ 283
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} Length = 416 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Score = 297 bits (761), Expect = 5e-99
Identities = 133/273 (48%), Positives = 178/273 (65%), Gaps = 13/273 (4%)
Query: 80 DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRY 139
+ ++ + D E+ + + +EK RQ + +ELIASEN+TS VM+A GS LTNKY+EG PGKRY
Sbjct: 4 EMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRY 63
Query: 140 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD 199
YGG EY+D +E L RA F NVQP SGS ANF VYTA+L+P D ++G++
Sbjct: 64 YGGCEYVDIVEQLAIDRAKELFGA----DYANVQPHSGSQANFAVYTALLEPGDTVLGMN 119
Query: 200 LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259
L HGGHL+HG V+ + + +PY +D TG +DY LEK A +PK+II G
Sbjct: 120 LAHGGHLTHG-----SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGF 173
Query: 260 SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP 319
SAY D+ +MR+IAD++GA L +DMAH++GLVAA V +P + VVTTTTHK+L GP
Sbjct: 174 SAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP 233
Query: 320 RGGMIFFKKDPVLGVELESAINNAVFPGLQVGF 352
RGG+I K + +N+AVFPG Q G
Sbjct: 234 RGGLILAKGGSEELYK---KLNSAVFPGGQGGP 263
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 296 bits (758), Expect = 1e-98
Identities = 134/270 (49%), Positives = 178/270 (65%), Gaps = 15/270 (5%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGA----EHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHGSP-----VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQVGF 352
MI ++ I+ A+FPG+Q G
Sbjct: 235 MILCQEQ------FAKQIDKAIFPGIQGGP 258
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Score = 112 bits (281), Expect = 2e-28
Identities = 37/267 (13%), Positives = 68/267 (25%), Gaps = 40/267 (14%)
Query: 102 FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGN-------EYIDELETLC- 153
FKSL+ S G K+ G ++G L L
Sbjct: 4 FKSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLI 63
Query: 154 --------QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGH 205
+K A +N D+ S AN V +A++ D ++ H
Sbjct: 64 HEGPAVAAEKHAARVYNADK----TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSV 119
Query: 206 LSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK----------LI 255
+ R + D + + A P+ +
Sbjct: 120 YNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAV 179
Query: 256 IAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA----------DPFKYC 305
I + ++ + + + + D A + ++ P
Sbjct: 180 IQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPG 239
Query: 306 DVVTTTTHKSLRGPRGGMIFFKKDPVL 332
+V + HK G KKD +
Sbjct: 240 IIVVQSVHKQQAGFSQTSQIHKKDSHI 266
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 102 bits (255), Expect = 7e-25
Identities = 39/282 (13%), Positives = 81/282 (28%), Gaps = 53/282 (18%)
Query: 92 EIITKEKERQFKSLELIASEN---FTSRAVM------EAVGSCLTNKYSEGLPGKRYYGG 142
E + + + + + N S V G+ + + + G + G
Sbjct: 13 EPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSG 72
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVN--VQPLSGSPANFEVYTAILKPHDRIMGLDL 200
+ L ++ +G + G A ++K ++ GLD
Sbjct: 73 SRSYYALA-----ESVKNI------FGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDR 121
Query: 201 PHGGHLSHGFMTPKR---RVSGTS-----IYFESMPYRLDESTGLVDYDMLEKTAILFRP 252
S+ F + +++G + I + G D + LE+ P
Sbjct: 122 SKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP 181
Query: 253 KLII---------AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-------- 295
+ + + M IA ++MD A +
Sbjct: 182 NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEY 241
Query: 296 ------SVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPV 331
+ + +KY D++ + K P GG++ K D
Sbjct: 242 KDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSF 283
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 95.8 bits (237), Expect = 2e-22
Identities = 35/259 (13%), Positives = 70/259 (27%), Gaps = 38/259 (14%)
Query: 122 VGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 181
+ ++++ + G Y G+ +L+ +A FN D + G A
Sbjct: 53 TNAMSDHQWAAMITGDEAYAGSRNYYDLK----DKAKELFNYDYI-----IPAHQGRGAE 103
Query: 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM------PYRLDEST 235
++ +LK + P H T + D+
Sbjct: 104 NILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWK 163
Query: 236 GLVDYDMLEKTA---------ILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDM 286
G D L++ + + + + +IA G ++MD
Sbjct: 164 GDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDS 223
Query: 287 AHISGLVA--------------ASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVL 332
A V+ D +KY D +T + K GG++ + + +
Sbjct: 224 ARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEI 283
Query: 333 GVELESAINNAVFPGLQVG 351
G
Sbjct: 284 FTLARQRCVPMEGFVTYGG 302
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 79.8 bits (196), Expect = 4e-17
Identities = 31/257 (12%), Positives = 59/257 (22%), Gaps = 45/257 (17%)
Query: 130 YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVN--VQPLSGSPANFEVYTA 187
++ + G Y G+E LE + + +G V G A +
Sbjct: 61 WAGMMIGDEAYAGSENFYHLE-----KTVKEL------FGFKHIVPTHQGRGAENLLSQL 109
Query: 188 ILKPHDRIMG---LDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE 244
+KP + G +G G +D + L
Sbjct: 110 AIKPGQYVAGNMYFTTTRFHQEKNGA-----TFVDIVRDEAHDASLNLPFKGDIDLNKLA 164
Query: 245 K---------TAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHIS----- 290
A + + + + ++A G + D
Sbjct: 165 TLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYF 224
Query: 291 ---------GLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN 341
+ +V + F Y D T + K GG + D + + +
Sbjct: 225 IKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCM-NDEEMFSAAKELVV 283
Query: 342 NAVFPGLQVGFVSYVFL 358
G
Sbjct: 284 VYEGMPSYGGLAGRDME 300
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 40.9 bits (94), Expect = 1e-04
Identities = 42/227 (18%), Positives = 73/227 (32%), Gaps = 23/227 (10%)
Query: 109 ASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN 166
S+ T + + +A+ ++ G YG + I+ELE R A
Sbjct: 5 RSDTVTKPTEEMRKAM--------AQAEVGDDVYGEDPTINELE-----RLAAET---FG 48
Query: 167 KWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 226
K P SG+ N A + D ++ H G M V + ++
Sbjct: 49 KEAALFVP-SGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKN 107
Query: 227 MPYRLDESTGLVDYDMLE--KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMM 284
D+ + + +T+++ + + IA G + +
Sbjct: 108 GAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHI 167
Query: 285 DMAHISGLVAASVV--ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKD 329
D A I AS V + Y D V K L P G ++ +D
Sbjct: 168 DGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRD 214
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 40.3 bits (93), Expect = 3e-04
Identities = 30/209 (14%), Positives = 66/209 (31%), Gaps = 17/209 (8%)
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G + L + L+ + P+S + +A K + + +
Sbjct: 107 GASIMYALTNKILESFFKQLGLNVHAIAT---PISTGMSISLCLSAARKKYGSNVVI--- 160
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK-----TAILFRPKLII 256
+ SH G ++ + LD V + +E + RP ++
Sbjct: 161 -YPYASHKSPIKAVSFVGMNMRL--VETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLS 217
Query: 257 AGASAYPRD-FDYPRMRQIADAVGALLMMDMAHISGLVAAS--VVADPFKYCDVVTTTTH 313
PR+ D + +I + +++ A+ + D V +++
Sbjct: 218 TLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSD 277
Query: 314 KSLRGPRGGMIFFKKDPVLGVELESAINN 342
K+L P GG + + D E+ +
Sbjct: 278 KNLLTPIGGGLVYSTDAEFIKEISLSYPG 306
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 358 | |||
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 100.0 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 100.0 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 100.0 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 100.0 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.87 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.86 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.85 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.85 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.83 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.82 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.8 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.79 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.78 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.77 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.77 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.76 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.74 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.74 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.74 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.73 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.73 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.72 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.72 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.72 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.72 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.71 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.71 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.71 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.7 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.7 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.69 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.69 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.68 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.66 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.66 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.65 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.65 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.64 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.64 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.63 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.63 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.63 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.63 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.62 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.62 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.61 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.6 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.59 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.59 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.58 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.57 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.55 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.53 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.52 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.52 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.5 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.47 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.47 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.46 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.43 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.42 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.41 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.4 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.4 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.39 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.37 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.34 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.34 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.32 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.31 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.29 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.29 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.2 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.05 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 98.92 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 98.52 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 98.51 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.47 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 98.42 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 98.35 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 98.33 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.08 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.06 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 97.89 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 97.62 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 97.48 |
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=100.00 E-value=2.6e-66 Score=513.57 Aligned_cols=283 Identities=64% Similarity=1.022 Sum_probs=266.9
Q ss_pred CcchhcccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHH
Q 018300 75 GSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQ 154 (358)
Q Consensus 75 ~~~~~~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~ 154 (358)
.+.++.+.|++.|||++++|++|..||+++|+||||||++|+.|++++++.++|+|+|||||.|||+|++++|++|.+|.
T Consensus 4 ~~~~~~~~l~~~D~ei~~~i~~e~~rq~~~l~LIaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~ 83 (470)
T d1rv3a_ 4 HEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQ 83 (470)
T ss_dssp HHHHTTSCHHHHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHH
T ss_pred hHHHHhhhHhhhCHHHHHHHHHHHHHHHcCceEecCCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHH
Confidence 36678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC
Q 018300 155 KRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES 234 (358)
Q Consensus 155 ~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~ 234 (358)
+|++++||++++.|+++|++.||+.||++++.++++|||+||.+++.+|||++|++......+...+..++.+.|+++++
T Consensus 84 ~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~ 163 (470)
T d1rv3a_ 84 KRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPD 163 (470)
T ss_dssp HHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTT
T ss_pred HHHHHHhCCChhhccccccccCCccHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecc
Confidence 99999999998788999999999999999999999999999999999999999997655445566777889999999999
Q ss_pred CCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcC
Q 018300 235 TGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHK 314 (358)
Q Consensus 235 ~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK 314 (358)
++.||||+++++++.++||+|+++.|+|++.+|++++++||+++|++|++|+||.+||+++|.+|+||+++|++++||||
T Consensus 164 ~~~IDyd~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~aDvvt~tTHK 243 (470)
T d1rv3a_ 164 TGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHK 243 (470)
T ss_dssp TCSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSG
T ss_pred cCcccHHHHHHHHHhhCcceEeechhhccccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhheeeeeeeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCcEEEEEEeCCCC---------chhHHHHHHhhccCCccccccccccc
Q 018300 315 SLRGPRGGMIFFKKDPV---------LGVELESAINNAVFPGLQVGFVSYVF 357 (358)
Q Consensus 315 ~L~Gp~GG~I~~~~~~~---------~~~~~~~~i~~~~f~g~q~~~~~~~~ 357 (358)
+|+|||||+|+++++.. ..++++++|++++|||+|||||+|.|
T Consensus 244 tlrGPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~I 295 (470)
T d1rv3a_ 244 TLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAI 295 (470)
T ss_dssp GGCCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHH
T ss_pred hccCCcceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHH
Confidence 99999999999997521 22469999999999999999999976
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=2.6e-66 Score=512.15 Aligned_cols=279 Identities=63% Similarity=1.039 Sum_probs=226.0
Q ss_pred hcccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHH
Q 018300 79 VDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (358)
Q Consensus 79 ~~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la 158 (358)
....|++.|||++++|++|.+||+++|+||||||++|+.|++++++.++|+|+|||||.|||+|++++|++|.+|++|++
T Consensus 4 ~~~~L~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~ 83 (463)
T d2a7va1 4 GQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRAL 83 (463)
T ss_dssp SCCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHH
T ss_pred ccCchhhhCHHHHHHHHHHHHHHhcCeeEeccCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCC
Q 018300 159 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 238 (358)
Q Consensus 159 ~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 238 (358)
++||+++++|+|||++.||+.||++++.+|++|||+||.+++.+|||++|++......+...+..++.++|+++++++.|
T Consensus 84 ~lF~~~~a~w~vNVqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~I 163 (463)
T d2a7va1 84 EAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLI 163 (463)
T ss_dssp HHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSB
T ss_pred HHhCCCchhccCCccccccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcC
Confidence 99999999999999999999999999999999999999999999999999976544456778888999999999999999
Q ss_pred CHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCcc
Q 018300 239 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG 318 (358)
Q Consensus 239 D~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~G 318 (358)
|||+++++++.++||+|+++.|+|++.+|++++++||+++|++|++|+||.+||+++|.+|+|++++|++++||||+|+|
T Consensus 164 Dyd~~~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~aDvvt~tTHKTlrG 243 (463)
T d2a7va1 164 DYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRG 243 (463)
T ss_dssp CHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCS
T ss_pred cHHHHHHHHhhcCCceEEecccccccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhhhhhhhchhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCCC---------chhHHHHHHhhccCCccccccccccc
Q 018300 319 PRGGMIFFKKDPV---------LGVELESAINNAVFPGLQVGFVSYVF 357 (358)
Q Consensus 319 p~GG~I~~~~~~~---------~~~~~~~~i~~~~f~g~q~~~~~~~~ 357 (358)
||||+|+++++.. ..++++++|++++|||+|||||+|.|
T Consensus 244 PrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~i 291 (463)
T d2a7va1 244 ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAI 291 (463)
T ss_dssp CSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHH
T ss_pred CCceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhH
Confidence 9999999998521 11368899999999999999999976
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=2.9e-65 Score=497.14 Aligned_cols=262 Identities=52% Similarity=0.858 Sum_probs=252.3
Q ss_pred ccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~l 160 (358)
+.|++.|||++++|++|+.||+++|+||||||++||.|++++++.++|+|+|||||.|||+|++++|++|.+|.+|++++
T Consensus 2 ~~l~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~l 81 (405)
T d1kl1a_ 2 KYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQL 81 (405)
T ss_dssp CHHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhCHHHHHHHHHHHHHHHcCceEeccCCcCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCH
Q 018300 161 FNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240 (358)
Q Consensus 161 fg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~ 240 (358)
||+++ ++|++.||+.||++++.+|++|||+||.+++.+|||++|+. .....|..++.+.|+++++++.||+
T Consensus 82 F~a~~----anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~-----~~~~~g~~~~~~~y~~d~~~~~ID~ 152 (405)
T d1kl1a_ 82 FGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGS-----PVNFSGVQYNFVAYGVDPETHVIDY 152 (405)
T ss_dssp HCCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-----TTSHHHHHSEEEEECBCTTTCSBCH
T ss_pred hCCCc----ceeeccCchHHHHHHHHHhcCCCCEEEEeecccccccccCc-----cccccceEEEEEEeccchhcccccH
Confidence 99987 69999999999999999999999999999999999999986 4456677889999999999999999
Q ss_pred HHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCc
Q 018300 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPR 320 (358)
Q Consensus 241 d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~ 320 (358)
|+++++++.++||+|+++.|.|++.+|++++++||+++|++|++|+||.+||+++|.+|+|++++|++++||||+|+|||
T Consensus 153 d~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~aDvvt~tThKtlrGPr 232 (405)
T d1kl1a_ 153 DDVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPR 232 (405)
T ss_dssp HHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCS
T ss_pred HHHHHHHHhhCcceEEecccccccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhhhhheeccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCccccccccccc
Q 018300 321 GGMIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357 (358)
Q Consensus 321 GG~I~~~~~~~~~~~~~~~i~~~~f~g~q~~~~~~~~ 357 (358)
||+|++++ ++.++|++++|||+|||||+|.|
T Consensus 233 gg~I~~~~------~~~~~i~~avfPg~qggp~~~~i 263 (405)
T d1kl1a_ 233 GGMILCQE------QFAKQIDKAIFPGIQGGPLMHVI 263 (405)
T ss_dssp CEEEEECH------HHHHHHHHHHTTTTCSSCCHHHH
T ss_pred CceEEecc------hhHHHHHhhhCcccccCcchhHH
Confidence 99999987 78999999999999999999975
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-63 Score=486.88 Aligned_cols=264 Identities=52% Similarity=0.810 Sum_probs=251.4
Q ss_pred ccccccChHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~~~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~l 160 (358)
..|++.|||++++|++|..||+++|+||||||++|+.|++++++.++|+|+|||||.|||+|++++|++|.+|++|++++
T Consensus 5 ~~l~~~D~ei~~~i~~e~~rq~~~i~LiaSEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~l 84 (416)
T d1dfoa_ 5 MNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKEL 84 (416)
T ss_dssp CCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHH
T ss_pred CChhhcCHHHHHHHHHHHHHHHcCceEecCcccCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCH
Q 018300 161 FNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240 (358)
Q Consensus 161 fg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~ 240 (358)
||+++ ++|++.||+.||++++.++++|||+||.+++.+|||++|+. .+...|..++.++|++++ ++.||+
T Consensus 85 F~a~~----anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~-----~~~~~g~~~~~~~y~~d~-~~~IDy 154 (416)
T d1dfoa_ 85 FGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGS-----PVNFSGKLYNIVPYGIDA-TGHIDY 154 (416)
T ss_dssp HTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTC-----TTSHHHHHSEEEEECBCS-SSSBCH
T ss_pred hCCCc----ceeecccCccHHHHHHHHhcCCCCeeeeccccccccccccc-----cccccCceEEEEecccCC-ccCccH
Confidence 99977 69999999999999999999999999999999999999986 456778888999999985 788999
Q ss_pred HHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCc
Q 018300 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPR 320 (358)
Q Consensus 241 d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~ 320 (358)
|+++++++.++||+|+++.|.|++.+|++++++||+++|++|++|+||.+||++++.+|+|++++|++++||||+|+|||
T Consensus 155 d~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~aDvvt~tThKtlrGPr 234 (416)
T d1dfoa_ 155 ADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPR 234 (416)
T ss_dssp HHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTTSSEEEEESSSTTCCCS
T ss_pred HHHHHHHHHhccceEEecccccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccccceeeeehhhcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCccccccccccc
Q 018300 321 GGMIFFKKDPVLGVELESAINNAVFPGLQVGFVSYVF 357 (358)
Q Consensus 321 GG~I~~~~~~~~~~~~~~~i~~~~f~g~q~~~~~~~~ 357 (358)
||+|+++++. .++.++|+.++||++|||||+|.|
T Consensus 235 ggiI~~~~~~---~~~~~~i~~avfPg~qggp~~~~i 268 (416)
T d1dfoa_ 235 GGLILAKGGS---EELYKKLNSAVFPGGQGGPLMHVI 268 (416)
T ss_dssp CEEEEESSCC---HHHHHHHHHHHTTTTCSSCCHHHH
T ss_pred ceEEEeccch---HhHHHHHHhhhCcccccCccHHHH
Confidence 9999998542 278899999999999999999975
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.87 E-value=3.1e-22 Score=190.07 Aligned_cols=195 Identities=13% Similarity=0.141 Sum_probs=133.7
Q ss_pred cCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHH-----HHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHH
Q 018300 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDE-----LETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (358)
Q Consensus 110 s~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~-----lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a 184 (358)
..+.+++++++|+.+ |..||+..+|..+.. .+. +-+..++++++++|++. .+++++||+||+++
T Consensus 10 ~~~~l~~~a~~a~~~-----~~~g~~~~~~~~~~~-~~~~~~~~l~~~~~~~~A~~~g~e~-----~~~t~g~t~a~~~~ 78 (364)
T d2e7ja1 10 TGGKLTEEARQALLE-----WGDGYSVCDFCTTGR-LDEIKTPPIHDFIHNQLPKFLGCDV-----ARVTNGAREAKFAV 78 (364)
T ss_dssp HTCCCCHHHHHHHHH-----C---------------------CCHHHHHHTHHHHHTTSSE-----EEEESSHHHHHHHH
T ss_pred cCCcCCHHHHHHHHH-----HhcCCchhccccccc-cccccChHHHHHHHHHHHHHhCcCE-----EEEECcHHHHHHHH
Confidence 566789999999864 445665544432211 111 33335677999999875 24567888999999
Q ss_pred HHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc----CCeEEEEcCC
Q 018300 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF----RPKLIIAGAS 260 (358)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~----~~klIi~~~s 260 (358)
+.++++|||+|+++++.|.+... .+...|..+..++.. +..++.+|++++++.+++. ++++|++..+
T Consensus 79 ~~al~~~gd~Vi~~~~~h~s~~~--------~~~~~g~~v~~v~~~-~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~ 149 (364)
T d2e7ja1 79 MHSLAKKDAWVVMDENCHYSSYV--------AAERAGLNIALVPKT-DYPDYAITPENFAQTIEETKKRGEVVLALITYP 149 (364)
T ss_dssp HHHHCCTTCEEEEETTCCHHHHH--------HHHHTTCEEEEECCC-CTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESS
T ss_pred HHHHhCCCcEEEeecccccccch--------HHHhccceEEEeeec-cccccccCHHHHHhhhhhhcccCCceEEEeecC
Confidence 99999999999998876644321 334567755555432 2235689999999988643 2356766554
Q ss_pred C--CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCc-EEEEEEeCC
Q 018300 261 A--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPR-GGMIFFKKD 329 (358)
Q Consensus 261 ~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~-GG~I~~~~~ 329 (358)
+ +|...|+++|.++|++||+++++|++|+.|.. +..+. ++|++++|+||+|++|. +|+++.+++
T Consensus 150 ~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~-----~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~ 218 (364)
T d2e7ja1 150 DGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRM-----PVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE 218 (364)
T ss_dssp CTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTB-----CCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTT
T ss_pred CCCCceeecchhheeccccccchhhccccchhhhh-----hhcccccccceeeeccccccCCCCCEEEEEECHH
Confidence 4 46789999999999999999999999987754 22222 89999999999998775 488888875
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.86 E-value=2.1e-21 Score=185.93 Aligned_cols=201 Identities=15% Similarity=0.150 Sum_probs=152.2
Q ss_pred CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-cc
Q 018300 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LK 190 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~ 190 (358)
...+++-++++.+.+...+ +..| +.++++|+ +++++||.++ .+.++|||.|+.+++.++ ++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~--------~~~G-~~v~~~E~----~la~~~g~~~-----ai~~~sgt~Al~~al~al~~~ 69 (376)
T d1mdoa_ 8 PAMGAEELAAVKTVLDSGW--------ITTG-PKNQELEA----AFCRLTGNQY-----AVAVSSATAGMHIALMALGIG 69 (376)
T ss_dssp CCCCHHHHHHHHHHHHHTC--------CSSS-HHHHHHHH----HHHHHHCCSE-----EEEESCHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHhcCC--------CcCC-HHHHHHHH----HHHHHHCcCe-----EEEeCCHHHHHHHHHHHhCCC
Confidence 3456666677777665432 1123 55677775 4899999987 377889999999999999 99
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHH
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPR 270 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~ 270 (358)
|||+|++++..+.+.. .++...|. +++.+++++++..+|+++|++.+.+ ++|+|++. +.+|...|+++
T Consensus 70 ~gdeVi~~~~~~~~~~--------~ai~~~g~--~pv~~d~~~~~~~~d~~~l~~~i~~-~tkaIi~~-h~~G~~~~~~~ 137 (376)
T d1mdoa_ 70 EGDEVITPSMTWVSTL--------NMIVLLGA--NPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV-HYAGAPADLDA 137 (376)
T ss_dssp TTCEEEEESSSCHHHH--------HHHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB-CGGGCCCCHHH
T ss_pred CCCEEEEecccccccc--------cchhcccc--ceeeecccccccCCCHHHHHHhcCC-CCeEEEEe-CCCCCccchhH
Confidence 9999999987554432 24455665 6677889988889999999999875 68887764 45788899999
Q ss_pred HHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHHhhccCCcc
Q 018300 271 MRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL 348 (358)
Q Consensus 271 I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~~~~f~g~ 348 (358)
|.++|+++|++||.|+||+.|....+.....+ +..+++|..+|.++++.||+|+++++ ++.+++......|.
T Consensus 138 i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~-g~~~~Sf~~~K~l~~g~GG~i~t~~~-----~l~~~~~~~~~~g~ 209 (376)
T d1mdoa_ 138 IYALGERYGIPVIEDAAHATGTSYKGRHIGAR-GTAIFSFHAIKNITCAEGGIVVTDNP-----QFADKLRSLKFHGL 209 (376)
T ss_dssp HHHHHHHHTCCBCEECTTCTTCEETTEETTSS-SEEEEECCTTSSSCSSSCEEEEESCH-----HHHHHHHHHTBTTE
T ss_pred HHHHHHhcCceEEeccchhccCeeCCeecccc-cCccccCCCcCCCCCCCCCEEEEech-----hHHHHHHhhcccCC
Confidence 99999999999999999999876554322222 33444555669999999999999997 78888877665554
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=5.3e-21 Score=186.42 Aligned_cols=200 Identities=17% Similarity=0.193 Sum_probs=148.2
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCC-cCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA 187 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~-r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~a 187 (358)
++.+++|+.|++++...+.+.| ++|++ .+..+.+..+.+|+ +|+.+++++|+...+ ..+++.++|+|++.++.+
T Consensus 29 a~~~~~p~~v~~~~~~~~~~~~--~n~~~~~~~~~~~~~~~~e~-~R~~ia~~l~~~~~~--~i~~~~~~T~~~~~~~~~ 103 (405)
T d1jf9a_ 29 AASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQATEKMEN-VRKRASLFINARSAE--ELVFVRGTTEGINLVANS 103 (405)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTC--CCCSSCSSHHHHHHHHHHHH-HHHHHHHHTTCSCGG--GEEEESSHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHhcc--CCCccchhHHHHHHHHHHHH-HHHHHHHHcCCCCcc--cccccCcHHHHHHHHHhc
Confidence 6677899999999998887765 45543 23334444556665 899999999976532 234455667788877765
Q ss_pred ----hccCCCEEEecCCCCCcccccccccchhcc-ccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-
Q 018300 188 ----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRV-SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA- 261 (358)
Q Consensus 188 ----ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~- 261 (358)
.+++||+|++.+.+|.+.... +..+ ...|..++.+ ++++ ++.+|++.+++++.. ++++|++.+.+
T Consensus 104 ~~~~~~~~g~~il~~~~e~~s~~~~-----~~~~a~~~g~~v~~~--~~~~-~g~~~~~~~~~~i~~-~t~lv~~~~v~~ 174 (405)
T d1jf9a_ 104 WGNSNVRAGDNIIISQMEHHANIVP-----WQMLCARVGAELRVI--PLNP-DGTLQLETLPTLFDE-KTRLLAITHVSN 174 (405)
T ss_dssp HHHHHCCTTCEEEEETTCCGGGTHH-----HHHHHHHHTCEEEEE--CBCT-TSCBCGGGHHHHCCT-TEEEEEEESBCT
T ss_pred ccccccCCCCEEEEEeCcccchHHH-----HHHHHHHcCcEEEEE--CCCC-CCcCCHHHHHHhccC-CcEEEEEecCCC
Confidence 268999999999888776432 1122 3346544444 4663 679999999998764 78998886533
Q ss_pred -CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeC
Q 018300 262 -YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKK 328 (358)
Q Consensus 262 -~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~ 328 (358)
.|...|+++|.++||++|+++++|++|++|.. +..+. ++|++++|+|||+ ||+| |+++.++
T Consensus 175 ~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~-----~id~~~~~~D~~~~s~hK~~-Gp~G~g~l~v~~ 239 (405)
T d1jf9a_ 175 VLGTENPLAEMITLAHQHGAKVLVDGAQAVMHH-----PVDVQALDCDFYVFSGHKLY-GPTGIGILYVKE 239 (405)
T ss_dssp TTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHHHTCSEEEEEGGGTT-SCSSCEEEEECH
T ss_pred cccccCchHHhhhHHHHcCCeeecccceecccc-----ccchhhcCCceeeccccccc-cCCCceeeeech
Confidence 57899999999999999999999999998865 22232 8999999999995 8987 8888876
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1e-20 Score=182.66 Aligned_cols=202 Identities=15% Similarity=0.190 Sum_probs=148.8
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCC-CCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA 187 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~-~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~a 187 (358)
++..++++.|+++|.+.+.+....|+|.+..+ .|....+.++ .+|+.+++++|+++++ .++..++|+++..++.+
T Consensus 9 aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~-~~R~~iA~~lg~~~~~---I~~~~~~t~~l~~~~~~ 84 (391)
T d1p3wa_ 9 SATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVD-IARNQIADLVGADPRE---IVFTSGATESDNLAIKG 84 (391)
T ss_dssp TTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHH-HHHHHHHHHHTCCGGG---EEEESSHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHH-HHHHHHHHHcCCCCCc---EEEECCHHHHHHHHHhh
Confidence 56678999999999988876655566654432 2333334454 4799999999999863 23444556788877766
Q ss_pred h----ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--
Q 018300 188 I----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-- 261 (358)
Q Consensus 188 l----l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-- 261 (358)
+ +++||+|++.+.+|.++... +..+...|..+..+ +.+ +++.+|++++++.+++ ++++|++...+
T Consensus 85 ~~~~~~~~gd~Vv~~~~~~~s~~~~-----~~~~~~~G~~v~~v--~~~-~~~~~d~~~~~~~i~~-~T~lv~is~~~n~ 155 (391)
T d1p3wa_ 85 AANFYQKKGKHIITSKTEHKAVLDT-----CRQLEREGFEVTYL--APQ-RNGIIDLKELEAAMRD-DTILVSIMHVNNE 155 (391)
T ss_dssp HHHHHGGGCCEEEEETTSCHHHHHH-----HHHHHHTTCEEEEE--CCC-TTSCCCHHHHHHHCCT-TEEEEECCSBCTT
T ss_pred hhhhhcCCCCEEEEeccccchHHHH-----HHHHHHcCCEEEEe--CCC-CCCeEcHHHHHHhCCC-CcEEEEEECCCCC
Confidence 4 58999999999888765321 12233446544444 455 4578999999999864 88999887654
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 262 ~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+|...|+++|.++||++|+++++|++|+.|.. +..+. ++|++++|+|||+ ||.| |+++.+++
T Consensus 156 tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~-----~~d~~~~~~D~~~~s~~k~~-g~~g~g~~~~~~~ 220 (391)
T d1p3wa_ 156 IGVVQDIAAIGEMCRARGIIYHVDATQSVGKL-----PIDLSQLKVDLMSFSGHKIY-GPKGIGALYVRRK 220 (391)
T ss_dssp TCCBCCHHHHHHHHHHHTCEEEEECTTTBTTB-----CCCTTTSCCSEEEEESTTTT-SCSSCEEEEECBT
T ss_pred CeeECCHHHHHHHhccCCcEEEEeeccccCCc-----cccchhcccccccccccccc-CCCceEEEEEecc
Confidence 57799999999999999999999999998864 22333 7999999999996 6665 88888775
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.83 E-value=3.4e-20 Score=180.84 Aligned_cols=201 Identities=18% Similarity=0.160 Sum_probs=146.1
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCC-cCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA 187 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~-r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~a 187 (358)
++.+++|+.|++++...+.+.+ ++|++ .+..|.+..+.+|+ +|+.+++++|++..+ ..+++.+++.++..++.+
T Consensus 29 a~~~~~p~~v~~~~~~~~~~~~--~n~~s~~~~~~~~~~~~~e~-aR~~ia~llga~~~~--~i~~~~~tt~~~n~~~~~ 103 (408)
T d1t3ia_ 29 AATSQKPRAVLEKLMHYYENDN--ANVHRGAHQLSVRATDAYEA-VRNKVAKFINARSPR--EIVYTRNATEAINLVAYS 103 (408)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTC--CCC--CCSHHHHHHHHHHHH-HHHHHHHHTTCSCGG--GEEEESSHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHHH-HHHHHHHHhCCCCcc--cEEeecchHHHHHHHHhh
Confidence 6777899999999999888765 44543 23445555566766 799999999998543 233344455687777655
Q ss_pred ----hccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCC--C
Q 018300 188 ----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS--A 261 (358)
Q Consensus 188 ----ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s--~ 261 (358)
-+++||+|++.+.+|.+...... ......|..+..++ .+ .++..|.+.+++.+.+ ++++|.+.+. .
T Consensus 104 ~~~~~~~~g~~il~s~~e~~s~~~~~~----~~~~~~g~~v~~~~--~~-~~~~~~~~~l~~~~~~-~t~lv~i~~~~~~ 175 (408)
T d1t3ia_ 104 WGMNNLKAGDEIITTVMEHHSNLVPWQ----MVAAKTGAVLKFVQ--LD-EQESFDLEHFKTLLSE-KTKLVTVVHISNT 175 (408)
T ss_dssp THHHHCCTTCEEEEETTCCGGGTHHHH----HHHHHHCCEEEEEC--BC-TTSSBCHHHHHHHCCT-TEEEEEEESBCTT
T ss_pred ccccccCCCCEEEeecccchhhhhhhh----hhhhccCceEeeee--cc-ccccccHHHhhhccCC-CceEEEEeccccc
Confidence 26899999999988776543110 11233455444444 44 4578899999998764 7899888643 3
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeC
Q 018300 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKK 328 (358)
Q Consensus 262 ~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~ 328 (358)
.|...|+++|.++|+++|+++++|++|++|.+ +..+. ++|++++|+||| .||+| |+++.++
T Consensus 176 tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~-----~id~~~~~~D~~~~s~hK~-~gp~G~g~l~v~~ 239 (408)
T d1t3ia_ 176 LGCVNPAEEIAQLAHQAGAKVLVDACQSAPHY-----PLDVQLIDCDWLVASGHKM-CAPTGIGFLYGKE 239 (408)
T ss_dssp TCBBCCHHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHHHTCSEEEEEGGGT-TSCTTCEEEEECH
T ss_pred ccccCcHHHHhhhhhccCceeeeccceecccc-----cccccccCCceEEeccccc-cCCCCccccccch
Confidence 67899999999999999999999999998865 22333 899999999998 57887 8888776
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=1e-19 Score=174.38 Aligned_cols=200 Identities=18% Similarity=0.194 Sum_probs=148.1
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHH-
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA- 187 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~a- 187 (358)
++..++|+.|++++...+.+.+ ++|++.+..+.+..+.+++ +|+++++++|+++++ .++..|+|+++..++.+
T Consensus 8 a~~~~~p~~v~ea~~~~~~~~~--~np~~~~~~~~~~~~~~~~-aR~~ia~l~~~~~~~---i~~~~~~T~~l~~~~~~~ 81 (376)
T d1eg5a_ 8 NATTRVDDRVLEEMIVFYREKY--GNPNSAHGMGIEANLHMEK-AREKVAKVLGVSPSE---IFFTSCATESINWILKTV 81 (376)
T ss_dssp TTCCCCCHHHHHHHHHHHHTCC--CCTTCSSHHHHHHHHHHHH-HHHHHHHHHTSCGGG---EEEESCHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHcC--CCCccccHHHHHHHHHHHH-HHHHHHHHcCCCCCc---EEEECCHHHHHHhhhhcc
Confidence 6778899999999999988775 6777655555555555665 799999999999863 24445566788877653
Q ss_pred ---hccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC--C
Q 018300 188 ---ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA--Y 262 (358)
Q Consensus 188 ---ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~--~ 262 (358)
.+++||.|++....++.+... ++.++..|. ++..++++ +++.+|++++++.+++ ++++|++.+.+ +
T Consensus 82 ~~~~~~~g~~v~~~~~~~~~~~~~-----~~~~~~~g~--~v~~vp~~-~~~~id~~~l~~~i~~-~t~lv~is~v~~~t 152 (376)
T d1eg5a_ 82 AETFEKRKRTIITTPIEHKAVLET-----MKYLSMKGF--KVKYVPVD-SRGVVKLEELEKLVDE-DTFLVSIMAANNEV 152 (376)
T ss_dssp HHHTTTTCCEEEECTTSCHHHHHH-----HHHHHHTTC--EEEECCBC-TTSCBCHHHHHHHCCT-TEEEEEEESBCTTT
T ss_pred cccccccCcccccccccchhhHHH-----HHHHHhcCC--EEEEEcCC-CCCeECHHHHHHhcCC-CceEEEEECCcccc
Confidence 367888998887655443221 123344565 55555676 4689999999999875 78998887654 5
Q ss_pred CCCCCHHHHHHHHHHc--CCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 263 PRDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 263 ~~~~dl~~I~~ia~e~--g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
|...|++++.++++++ |+++++|++|++|.+ +..+. ++|++++|+|||+ ||+| |+++.+++
T Consensus 153 G~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~-----~~d~~~~~~D~~~~s~~K~~-gp~G~~~l~~~~~ 218 (376)
T d1eg5a_ 153 GTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKI-----PFSLEKLEVDYASFSAHKFH-GPKGVGITYIRKG 218 (376)
T ss_dssp CBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTS-----CCCCTTTCCSEEEEEGGGGT-SCTTCEEEEECTT
T ss_pred ceeeeehhhhhhhhhcccCceeEEEeeeccccc-----cccccccCccceecccceee-cCCCceeEEeccC
Confidence 6788999999998665 999999999998865 33343 7999999999995 7877 77777664
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1e-19 Score=174.75 Aligned_cols=198 Identities=16% Similarity=0.144 Sum_probs=143.4
Q ss_pred hcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHH
Q 018300 103 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (358)
Q Consensus 103 ~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~ 182 (358)
+.+-+.|++..+++.|+++|.... .++ .+.++.+.+++ ++++++++||++.+ + ..+++.|||.|+.
T Consensus 19 ~~~l~~pGP~~~~~~Vl~am~~~~--------i~H---Rs~~f~~i~~e-a~~~l~~llg~~~~-~-~ii~~gsgT~a~~ 84 (388)
T d1h0ca_ 19 NQLLLGPGPSNLPPRIMAAGGLQM--------IGS---MSKDMYQIMDE-IKEGIQYVFQTRNP-L-TLVISGSGHCALE 84 (388)
T ss_dssp CCEECSSSCCCCCHHHHHHHTCCC--------CCT---TSHHHHHHHHH-HHHHHHHHHTCCCS-E-EEEESSCHHHHHH
T ss_pred cCccccCCCCCCCHHHHHHhCcCC--------CCC---CCHHHHHHHHH-HHHHHHHHhCCCCC-c-EEEEcCcHHHHHH
Confidence 446688999999999999986322 222 24566665555 89999999999764 2 2344457889999
Q ss_pred HHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCC--
Q 018300 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS-- 260 (358)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s-- 260 (358)
+++.+++++||++++... +|.+..+. ......+. ....+..+ +...+|.+++++.+...+++++.+.+.
T Consensus 85 ~~i~~l~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~n 155 (388)
T d1h0ca_ 85 AALVNVLEPGDSFLVGAN---GIWGQRAV---DIGERIGA--RVHPMTKD-PGGHYTLQEVEEGLAQHKPVLLFLTHGES 155 (388)
T ss_dssp HHHHHHCCSSCCEEECBS---SHHHHHHH---HHHHHHC----CBCCBCC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHhhccCCceeeecc---cceeeeec---cccccccc--cccccccC-CccccchHHHHHHhccCCcceEEEeeeee
Confidence 999999999999998764 33332211 11112222 23333333 345789999988877778898877543
Q ss_pred CCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeC
Q 018300 261 AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKK 328 (358)
Q Consensus 261 ~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~ 328 (358)
.+|...|+++|.++|+++|+++++|++|++|.. +..++ ++|++++|.||++.||.| |+++.++
T Consensus 156 ~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~-----~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~ 221 (388)
T d1h0ca_ 156 STGVLQPLDGFGELCHRYKCLLLVDSVASLGGT-----PLYMDRQGIDILYSGSQKALNAPPGTSLISFSD 221 (388)
T ss_dssp TTTEECCCTTHHHHHHTTTCEEEEECTTTTTTS-----CCCTTTTTCSEEEEESSSTTCCCTTCEEEEECH
T ss_pred ccccccCHHHHHHHhhcccccceeccccccccc-----cccccccccceecccccccccCCCceEEEeecH
Confidence 467789999999999999999999999998865 33444 899999999999999998 5555554
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.79 E-value=3.8e-19 Score=170.48 Aligned_cols=204 Identities=17% Similarity=0.186 Sum_probs=139.8
Q ss_pred cccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHH
Q 018300 108 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA 187 (358)
Q Consensus 108 ias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~a 187 (358)
.++..++|..|++++...+.+.+..|... +.......++.+.+|+.+++++|+++++ .+++.+||+|++.++.+
T Consensus 13 ~~~~~~~p~~v~ea~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~r~~la~~~~~~~~~---i~~~~g~t~a~~~~~~~ 86 (381)
T d1elua_ 13 FGGQGILPTVALEAITAMYGYLQENGPFS---IAANQHIQQLIAQLRQALAETFNVDPNT---ITITDNVTTGCDIVLWG 86 (381)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHHHHCSSS---HHHHHHHHHHHHHHHHHHHHHTTSCGGG---EEEESSHHHHHHHHHHH
T ss_pred CCcccCCCHHHHHHHHHHHHHhhcCCCcc---chhhHHHHHHHHHHHHHHHHHhCCCccc---EEEECChHHHhhhcchh
Confidence 36677889999999988776543322111 1122334444455899999999998753 24455667899999999
Q ss_pred h-ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCC-HHHHHHHhhhcCCeEEEEcCCC--CC
Q 018300 188 I-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD-YDMLEKTAILFRPKLIIAGASA--YP 263 (358)
Q Consensus 188 l-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD-~d~le~~i~~~~~klIi~~~s~--~~ 263 (358)
+ +++||+|++++.+|++...... ......|..+..++ .+......| .+.+++.+. .+++++++...+ +|
T Consensus 87 l~~~~g~~i~~~~~~~~s~~~~~~----~~~~~~g~~~~~v~--~~~~~~~~~~~~~l~~~i~-~~t~~v~i~~~~n~tG 159 (381)
T d1elua_ 87 LDWHQGDEILLTDCEHPGIIAIVQ----AIAARFGITYRFFP--VAATLNQGDAAAVLANHLG-PKTRLVILSHLLWNTG 159 (381)
T ss_dssp SCCCTTCEEEEETTCCHHHHHHHH----HHHHHHCCEEEEEC--CGGGSSSSCHHHHHHTTCC-TTEEEEEEESBCTTTC
T ss_pred hhhcCCceEEEeccccceeeeccc----cccccccccccccc--cccccccchHHHHHHhhhc-cccccccccccccccc
Confidence 8 8999999999887765432100 11123455444443 432222333 455666554 377888776544 57
Q ss_pred CCCCHHHHHHHHHHc----CCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 264 RDFDYPRMRQIADAV----GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 264 ~~~dl~~I~~ia~e~----g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
...|+++|.++|+++ |+++++|++|++|.. +..++ ++|++++|+||||.||.| |+++.+++
T Consensus 160 ~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~-----~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~ 227 (381)
T d1elua_ 160 QVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSL-----PLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGD 227 (381)
T ss_dssp CBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTB-----CCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTT
T ss_pred ccchhhHHHHHHhhcccccccccccccccccccc-----cccccccccccccccccccccccchhhHHHhhHH
Confidence 889999999999985 699999999998754 33343 899999999999999988 88888774
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.78 E-value=9.3e-19 Score=169.45 Aligned_cols=197 Identities=15% Similarity=0.146 Sum_probs=143.1
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-ccC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKP 191 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~p 191 (358)
....+-++++.+.+.... .++.+.+.+.++|+ ++++++|.+++ +.+.|||.|+.+++.++ +++
T Consensus 10 ~~~~~~~~~~~~~l~~g~-------~~~~~g~~v~~fE~----~~a~~~g~~~~-----v~~~SGt~Al~lal~~l~~~~ 73 (384)
T d1b9ha_ 10 QYDDAERNGLVRALEQGQ-------WWRMGGDEVNSFER----EFAAHHGAAHA-----LAVTNGTHALELALQVMGVGP 73 (384)
T ss_dssp CCCHHHHHHHHHHHHTSC-------CBTTTCSHHHHHHH----HHHHHTTCSEE-----EEESCHHHHHHHHHHHTTCCT
T ss_pred CCCHHHHHHHHHHHHcCC-------eeecCCHHHHHHHH----HHHHHHCcCeE-----EEeCCHHHHHHHHHHHcCCCC
Confidence 344555666666665321 01122345667775 58899999983 77899999999999998 899
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHH
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRM 271 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I 271 (358)
||+|++++..+.+.. ..+...|. +++.+++++++..+|++.+++.+.. ++|.|++ .+.+|...|+++|
T Consensus 74 gdeVi~p~~t~~a~~--------~ai~~~g~--~p~~~d~~~~~~~~d~~~~~~~i~~-~tk~i~~-~~~~g~~~d~~~i 141 (384)
T d1b9ha_ 74 GTEVIVPAFTFISSS--------QAAQRLGA--VTVPVDVDAATYNLDPEAVAAAVTP-RTKVIMP-VHMAGLMADMDAL 141 (384)
T ss_dssp TCEEEEESSSCTHHH--------HHHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEECC-BCGGGCCCCHHHH
T ss_pred CCEEEEecccccccc--------cccccccc--ccccccccccccccchhhhcccccc-ccccccc-ccccccccccccc
Confidence 999999886544322 23445665 5677788888899999999998764 6777654 3457788999999
Q ss_pred HHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 272 RQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 272 ~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
.++|+++|++++.|+||+.|....|.....+..+.++.++.+|.+.+..||+|+++++ ++.+++..
T Consensus 142 ~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~K~i~~g~GG~i~t~~~-----~~~~~~~~ 207 (384)
T d1b9ha_ 142 AKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDG-----ETEKYETA 207 (384)
T ss_dssp HHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTT-----CHHHHHHH
T ss_pred hhhhhhhhhhhhhhhceecccccCCEecCcccccceecccccccccccccchhhhhhH-----HHHHHHHH
Confidence 9999999999999999999987665432222223344455569998889999999987 55555443
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=2.5e-18 Score=164.77 Aligned_cols=199 Identities=15% Similarity=0.138 Sum_probs=140.2
Q ss_pred cccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceEEeCCCHHHHHHH
Q 018300 106 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEV 184 (358)
Q Consensus 106 ~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~-~~~~~v~V~~~SGt~A~~~a 184 (358)
-|+|++..++++|++||.... .++| +.++.+.+++ +++.++++++.. .+++.+.+++.|||.|+.++
T Consensus 6 l~~PGP~~v~~~V~~Am~~~~--------~~hr---~~~f~~~~~~-~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~ 73 (382)
T d2bkwa1 6 LLIPGPIILSGAVQKALDVPS--------LGHT---SPEFVSIFQR-VLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIF 73 (382)
T ss_dssp ECSSSSCCCCHHHHHTTSCCC--------CCTT---SHHHHHHHHH-HHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHH
T ss_pred ccCCCCCCCCHHHHHHhCccc--------CCCC---cHHHHHHHHH-HHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHH
Confidence 467999999999999985321 2222 3455554544 678888898852 22232455667899999999
Q ss_pred HHHhc---cCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC--
Q 018300 185 YTAIL---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA-- 259 (358)
Q Consensus 185 ~~all---~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~-- 259 (358)
+.+++ +|||+|++... +++++.+. ......+.....+. ..+....++.+.+++.+...+++++.+.+
T Consensus 74 ~~~l~~~~~~gd~vlv~~~---~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (382)
T d2bkwa1 74 ASNFILSKAPNKNVLVVST---GTFSDRFA---DCLRSYGAQVDVVR--PLKIGESVPLELITEKLSQNSYGAVTVTHVD 145 (382)
T ss_dssp HHHHSCTTCSCCEEEEECS---SHHHHHHH---HHHHHTTCEEEEEC--CSSTTSCCCHHHHHHHHHHSCCSEEEEESEE
T ss_pred HHHHHHhcCCCCceEEEEe---chhhhhhh---hhcccccccccccc--ccCCCCccchhHHHHHhhhccchheeeeecc
Confidence 99985 68999999764 44333221 11233444333332 33334578889998888777888877644
Q ss_pred CCCCCCCCHHHHHHHHHHc--CCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 260 SAYPRDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 260 s~~~~~~dl~~I~~ia~e~--g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
+.++...|++++.++|+++ ++++++|++|++|.. |..++ ++|++++|.||+|.||.| |+++.+++
T Consensus 146 ~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~-----pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~ 215 (382)
T d2bkwa1 146 TSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCE-----EFEFDEWGVDFALTASQKAIGAPAGLSISLCSSR 215 (382)
T ss_dssp TTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTS-----CCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHH
T ss_pred ccccccccchhhhhhccccccceeeeeecccccccc-----cccccccCeeEEeecccccCcCCCchhhhhccHH
Confidence 4467789999999998877 599999999998864 33444 899999999999999998 88888873
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=5.2e-18 Score=163.26 Aligned_cols=230 Identities=16% Similarity=0.110 Sum_probs=156.5
Q ss_pred hcccccccChHHHHHHHHHHH-Hhhhccccc---cc--CCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHH
Q 018300 79 VDYSLGEADPEVCEIITKEKE-RQFKSLELI---AS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETL 152 (358)
Q Consensus 79 ~~~~l~~~d~~~~~~i~~e~~-~~~~~i~li---as--~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~ 152 (358)
++++++.+.|...-.+.+..+ .+..+.++| .+ +..+|+.|++++...+.+.. .+|+. ..|.. ++++.
T Consensus 4 ~~~r~~~~~~s~~~~i~~~a~~~~~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~-~~Y~~---~~G~~---~lR~~ 76 (382)
T d1b5pa_ 4 LSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGK-TKYAP---PAGIP---ELREA 76 (382)
T ss_dssp CCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CSCCC---TTCCH---HHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCC-cCCCC---CCCCH---HHHHH
Confidence 577888888886655654433 334564554 23 33578999999988775432 35654 23444 56666
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCC-HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SG-t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~ 231 (358)
+.+++.+.+|.+-+ + -+|++++| +.|+..++.++++|||+|++.+|.|.++.. .+...|.. ++.++.
T Consensus 77 ia~~~~~~~~~~~~-~-~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~--------~~~~~g~~--~~~v~~ 144 (382)
T d1b5pa_ 77 LAEKFRRENGLSVT-P-EETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPE--------MVRFAGGV--VVEVET 144 (382)
T ss_dssp HHHHHHHTTCCCCC-G-GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTCE--EEEEEC
T ss_pred HHhhhhhhcccccc-c-ccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHH--------HHHHhcCe--EEEEec
Confidence 77777777776532 1 24556666 569999999999999999999887766532 23455653 445544
Q ss_pred cCC-CCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--
Q 018300 232 DES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-- 303 (358)
Q Consensus 232 ~~~-~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-- 303 (358)
+++ +..+|++++++.+.. +++++++..++||+ ..+ +++|.++|+++|++|++|++|. .+.+.+....+..
T Consensus 145 ~~~~~~~~d~~~l~~~~~~-~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~ 222 (382)
T d1b5pa_ 145 LPEEGFVPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYE-HLLYEGEHFSPGRVA 222 (382)
T ss_dssp CGGGTTCCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBSSSCCCCGGGTC
T ss_pred ccccccCCCHHHHHHhCCC-CCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEcccc-ceecCCCCCCHHHcC
Confidence 443 347899999988754 67877776666654 444 7788999999999999999976 5555444333332
Q ss_pred -CCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 304 -YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 304 -gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
.--+++.|++|+| +|.|.|+++++++
T Consensus 223 ~~~~i~~~s~SK~~~~~GlR~G~~~~~~~ 251 (382)
T d1b5pa_ 223 PEHTLTVNGAAKAFAMTGWRIGYACGPKE 251 (382)
T ss_dssp TTTEEEEEESTTTTTCGGGCCEEEECCHH
T ss_pred CCCEEEEecchhhccCcHhheEEEEECHH
Confidence 2237788999996 6788999998774
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.76 E-value=5.5e-19 Score=167.60 Aligned_cols=196 Identities=17% Similarity=0.043 Sum_probs=129.5
Q ss_pred ccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHH
Q 018300 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (358)
Q Consensus 105 i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a 184 (358)
+-+.|++..+++.|++||.....++ .+.++.+.++ .+++++++++|+++++. +.++.+|||.++.++
T Consensus 2 ~l~~pGP~~~~~~V~~A~~~~~~~~-----------~~~~~~~~~~-~~r~~l~~l~~~~~~~~-~i~~t~s~T~~~~~~ 68 (361)
T d1m32a_ 2 LLLTPGPLTTSRTVKEAMLFDSCTW-----------DDDYNIGVVE-QIRQQLTALATASEGYT-SVLLQGSGSYAVEAV 68 (361)
T ss_dssp EECSSSSCCCCHHHHHTTCCCCCTT-----------SHHHHTTTHH-HHHHHHHHHHCSSSSEE-EEEEESCHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhhhhccCC-----------CcHHHHHHHH-HHHHHHHHHhCCCCCCE-EEEECCCHHHHHHHH
Confidence 3467999999999999986432111 1223333444 48999999999987531 234456788999999
Q ss_pred HHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCH--HHHHHHhhhcCCeEEEEcC--C
Q 018300 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY--DMLEKTAILFRPKLIIAGA--S 260 (358)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~--d~le~~i~~~~~klIi~~~--s 260 (358)
+.++..++|.+++....+.+..... .....+....... .. .....+. +...... ..+++++.+.+ +
T Consensus 69 ~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~ 138 (361)
T d1m32a_ 69 LGSALGPQDKVLIVSNGAYGARMVE------MAGLMGIAHHAYD--CG-EVARPDVQAIDAILNA-DPTISHIAMVHSET 138 (361)
T ss_dssp HHHSCCTTCCEEEEESSHHHHHHHH------HHHHHTCCEEEEE--CC-TTSCCCHHHHHHHHHH-CTTCCEEEEESEET
T ss_pred HHHhhhhccccceeeehhhhhhHHH------Hhhhhhccccccc--cc-ccCCccchhhHHHHHh-ccCccceEEEeeec
Confidence 9999888888777653221111110 1111222222222 22 1223333 3333332 24678776644 3
Q ss_pred CCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeC
Q 018300 261 AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKK 328 (358)
Q Consensus 261 ~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~ 328 (358)
.+|...|+++|.++|+++|+++++|++|++|.. +..++ ++|++++|+||||.||.| |+++.++
T Consensus 139 ~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~-----~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~ 204 (361)
T d1m32a_ 139 TTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGI-----PMDIAALHIDYLISSANKCIQGVPGFAFVIARE 204 (361)
T ss_dssp TTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS-----CCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEH
T ss_pred ccccchhhhhhhhhhcccceeeEeecccccCcc-----cccccccccceEEeeecccccCCCCceEEEech
Confidence 467889999999999999999999999998865 33344 899999999999999988 8888776
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.74 E-value=8.7e-18 Score=163.05 Aligned_cols=169 Identities=21% Similarity=0.230 Sum_probs=132.0
Q ss_pred CCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccc
Q 018300 132 EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFM 211 (358)
Q Consensus 132 ~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~ 211 (358)
.||.+.|+ |++.++.+|+. ++++.|.+. .+.+.||+.|+.+++.+++++||+|++.+..|++.....
T Consensus 53 ~~~~Y~R~--~nPT~~~LE~~----la~LEgg~~-----a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~-- 119 (397)
T d1y4ia1 53 SGYIYTRL--GNPTTDALEKK----LAVLERGEA-----GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL-- 119 (397)
T ss_dssp SSSCCCTT--SCHHHHHHHHH----HHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHH--
T ss_pred CCceeeCC--CCHHHHHHHHH----HHHHhCCcc-----ceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhh--
Confidence 35666665 78888888874 788999876 367889999999999999999999999987777753211
Q ss_pred cchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCCHHHHHHHHHHcCCEEEEecccc
Q 018300 212 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHI 289 (358)
Q Consensus 212 ~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~dl~~I~~ia~e~g~~livD~Ah~ 289 (358)
. ..+...|. ++..+ + .-|.+++++.+++ ++|+|+++.+.+|. ..|+++|+++|+++|+++++|++-+
T Consensus 120 ~--~~l~~~Gi--~~~~v--d----~~d~~~~~~~i~~-~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~a 188 (397)
T d1y4ia1 120 S--HSMPKFGI--NVRFV--D----AGKPEEIRAAMRP-ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFM 188 (397)
T ss_dssp H--THHHHTTC--EEEEE--C----TTSHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred h--cccCCCce--Eeecc--C----CCCHHHHHHhcCC-CCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCccc
Confidence 0 11223455 44443 2 2378999998864 78999999888774 7899999999999999999999843
Q ss_pred ccccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCC
Q 018300 290 SGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (358)
Q Consensus 290 ~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~ 329 (358)
.+....|++ |+|+++.|+.|++.|.. ||.++++++
T Consensus 189 -----tP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~ 227 (397)
T d1y4ia1 189 -----SPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQE 227 (397)
T ss_dssp -----CTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHH
T ss_pred -----CcccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHH
Confidence 344457888 99999999999998864 699998875
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.74 E-value=1.2e-17 Score=159.86 Aligned_cols=198 Identities=15% Similarity=0.099 Sum_probs=142.6
Q ss_pred hcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHH
Q 018300 103 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (358)
Q Consensus 103 ~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~ 182 (358)
+.+.++|++..+++.|++||..... ++ .+.++.+.+++ +++.+++++|++..+ +.++..|||.++.
T Consensus 17 ~~~l~~PGP~~~~~~V~~Am~~~~~--------~h---r~~ef~~i~~~-~r~~L~~ll~~~~~~--~i~~~gsgT~a~e 82 (388)
T d2ch1a1 17 EKIMMGPGPSNCSKRVLTAMTNTVL--------SN---FHAELFRTMDE-VKDGLRYIFQTENRA--TMCVSGSAHAGME 82 (388)
T ss_dssp CCBCCSSSSCCCCHHHHHHTTSCCC--------CT---TCHHHHHHHHH-HHHHHHHHHTCCCSC--EEEESSCHHHHHH
T ss_pred cceeeeCCCCCCCHHHHHHhCcCCC--------CC---CCHHHHHHHHH-HHHHHHHHhCCCCCe--EEEEcCcHHHHHH
Confidence 3466889999999999999864321 22 25666666665 899999999997532 3334457788999
Q ss_pred HHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC--C
Q 018300 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA--S 260 (358)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~--s 260 (358)
+++.+++.+||+|+++.. ++++..+. ......+.....+. .. +....+.+++++.....+++++.+.+ +
T Consensus 83 a~~~~l~~~~~~vl~~~~---g~~~~~~~---~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~t 153 (388)
T d2ch1a1 83 AMLSNLLEEGDRVLIAVN---GIWAERAV---EMSERYGADVRTIE--GP-PDRPFSLETLARAIELHQPKCLFLTHGDS 153 (388)
T ss_dssp HHHHHHCCTTCEEEEEES---SHHHHHHH---HHHHHTTCEEEEEE--CC-TTSCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHhcccccccccccc---ccccccch---hhhhhhcccccccc--cc-cccccchhhhhhhhccCCcceeeeeeccc
Confidence 999999999999998753 44443221 11223344333333 33 24567888887777667888887643 4
Q ss_pred CCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeC
Q 018300 261 AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKK 328 (358)
Q Consensus 261 ~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~ 328 (358)
.++...|+++|.++||++|+++++|++|++|.. +..++ ++|++++|.||++.||.| |+++.++
T Consensus 154 ~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~-----pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~ 219 (388)
T d2ch1a1 154 SSGLLQPLEGVGQICHQHDCLLIVDAVASLCGV-----PFYMDKWEIDAVYTGAQKVLGAPPGITPISISP 219 (388)
T ss_dssp TTTEECCCTTHHHHHHHTTCEEEEECTTTBTTB-----CCCTTTTTCCEEECCCC-CCCCCSSCEEEEECH
T ss_pred ccccccchhhhcchhccccceeeeeeeeccccc-----ccchhccCceEEEEccccccCCCCeEEEEeccH
Confidence 467789999999999999999999999998854 33344 899999999999999998 6666665
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.74 E-value=4.8e-18 Score=164.74 Aligned_cols=168 Identities=19% Similarity=0.224 Sum_probs=127.8
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
+|.+.|. |++..+.+|+. ++++.|.+. .+.+.||+.|+.+++.+++++||+|++.+..||+.... ..
T Consensus 50 ~~~Y~R~--~nPT~~~LE~~----la~LEg~~~-----a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l--~~ 116 (392)
T d1gc0a_ 50 GHFYSRI--SNPTLNLLEAR----MASLEGGEA-----GLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAF--LH 116 (392)
T ss_dssp ---------CCHHHHHHHHH----HHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHH--HH
T ss_pred CceecCC--CChHHHHHHHH----HHHHhCCcc-----eeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhh--hh
Confidence 4555554 78888888874 788999876 36689999999999999999999999999888875321 10
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCCHHHHHHHHHHcCCEEEEeccccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~dl~~I~~ia~e~g~~livD~Ah~~ 290 (358)
......|. ++..+ | .-|++++++.+++ ++|+|+++.+.+|+ +.|+++|+++||++|+++++|++.+.
T Consensus 117 --~~~~~~Gi--~~~~~--d----~~d~~~~~~ai~~-~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~at 185 (392)
T d1gc0a_ 117 --HGIGEFGV--KLRHV--D----MADLQALEAAMTP-ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCT 185 (392)
T ss_dssp --HTGGGGTC--EEEEE--C----TTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTH
T ss_pred --hhhccCCc--ccccC--C----ccCHHHHHHhCCC-CCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccC
Confidence 12233454 44443 2 3478999998864 78999998888774 79999999999999999999998665
Q ss_pred cccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCC
Q 018300 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (358)
Q Consensus 291 Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~ 329 (358)
++. ..|++ |+|+++.|++|++.|.. ||.++++++
T Consensus 186 P~~-----~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~ 223 (392)
T d1gc0a_ 186 PYL-----QRPLELGADLVVHSATKYLSGHGDITAGIVVGSQA 223 (392)
T ss_dssp HHH-----CCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHH
T ss_pred ccc-----cChHHhCCCEEEEecceeecCCcccccccccchhH
Confidence 443 47888 99999999999998854 688888874
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=9.4e-18 Score=162.34 Aligned_cols=188 Identities=21% Similarity=0.223 Sum_probs=137.5
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
||.+.|. |++....+|+. ++++.|.+. .+.+.||+.|+..++.+++++||+|++.+..|++..... .
T Consensus 41 ~~~Y~R~--~nPt~~~le~~----la~LEgg~~-----a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~--~ 107 (384)
T d1cs1a_ 41 AHDYSRR--GNPTRDVVQRA----LAELEGGAG-----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLF--D 107 (384)
T ss_dssp SCSBTTT--CCHHHHHHHHH----HHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHH--H
T ss_pred CCcccCC--CCHHHHHHHHH----HHHHhCCCc-----eEEecChHHHHHHHHhhcccccceecccccccchhhhhh--h
Confidence 4555554 78888888774 788999876 367899999999999999999999999987776643211 0
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCCHHHHHHHHHHcCCEEEEeccccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~dl~~I~~ia~e~g~~livD~Ah~~ 290 (358)
......|. +...+ + ..|.+++++.+.. ++|+|+++.+.+|. ..|+++|+++||++|+++++|++-+
T Consensus 108 --~~~~~~g~--~~~~~--d----~~d~~~~~~~~~~-~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~a- 175 (384)
T d1cs1a_ 108 --SLAKRGCY--RVLFV--D----QGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFL- 175 (384)
T ss_dssp --HHHTTTSC--EEEEE--C----TTCHHHHHHHHHT-CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT-
T ss_pred --hhhccccc--ccccc--c----CCCHHHHHhhccc-cccEEEEeccccccceeccHHHHhhhhhhcCcEEEEecccc-
Confidence 11222343 33332 2 3478899888764 89999999888774 7899999999999999999999843
Q ss_pred cccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhh-ccCCcccccccc
Q 018300 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN-AVFPGLQVGFVS 354 (358)
Q Consensus 291 Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~-~~f~g~q~~~~~ 354 (358)
.+....|++ |+|+++.|+.|++.|.. ||+++++++ ++.+++.. ....|...+|+.
T Consensus 176 ----tP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~-----~~~~~~~~~~~~~G~~~~p~~ 235 (384)
T d1cs1a_ 176 ----SPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDP-----DVVTELAWWANNIGVTGGAFD 235 (384)
T ss_dssp ----CTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSH-----HHHHHHHHHHHHHTCBCCHHH
T ss_pred ----CcccccccccCCCEEEEccccccccCCCcccccccCCch-----hhhhhhhhhhhhhhhcccccc
Confidence 334457888 99999999999998864 588888775 55554443 222344445543
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.73 E-value=1.8e-17 Score=157.71 Aligned_cols=198 Identities=12% Similarity=0.094 Sum_probs=138.9
Q ss_pred hcccccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHH
Q 018300 103 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (358)
Q Consensus 103 ~~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~ 182 (358)
+.+-+.|++..+++.|++||..... + +.+.++.+.+++ +++.+++++|++..+ ..++..|||.++.
T Consensus 18 ~~~l~~PGP~~v~~~Vl~am~~~~~--------~---hr~~ef~~i~~~-~r~~l~~ll~~~~~~--~i~~~g~gT~~~~ 83 (377)
T d1vjoa_ 18 SRLLLGPGPSNAHPSVLQAMNVSPV--------G---HLDPAFLALMDE-IQSLLRYVWQTENPL--TIAVSGTGTAAME 83 (377)
T ss_dssp CCEECSSSCCCCCHHHHHHHSSCCC--------C---TTSHHHHHHHHH-HHHHHHHHHTCCCSC--EEEESSCHHHHHH
T ss_pred cceeecCCCCCCCHHHHHHhCcCCC--------C---CCCHHHHHHHHH-HHHHHHHHhCCCCCe--EEEEcCcHHHHHH
Confidence 3457779999999999999853221 1 235677777766 799999999997642 2334456788999
Q ss_pred HHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC--C
Q 018300 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA--S 260 (358)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~--s 260 (358)
+++.+++.+||++++....+.+ ..+. ......+....... .. .+...+.+..+......+++++.+.+ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 154 (377)
T d1vjoa_ 84 ATIANAVEPGDVVLIGVAGYFG---NRLV---DMAGRYGADVRTIS--KP-WGEVFSLEELRTALETHRPAILALVHAET 154 (377)
T ss_dssp HHHHHHCCTTCEEEEEESSHHH---HHHH---HHHHHTTCEEEEEE--CC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHhccccccccceeeechhh---hhhh---hhhhhhcccccccc--cC-CCCcccchhhhhhhhcCcceeeeeeeeec
Confidence 9999999999999987643322 2111 11222333333332 22 23455666666555555788876644 3
Q ss_pred CCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeC
Q 018300 261 AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKK 328 (358)
Q Consensus 261 ~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~ 328 (358)
..+...|+++|.++||++|+++++|++|++|.. +.+++ ++|++++|.||++.||.| |+++.++
T Consensus 155 ~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~-----~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~ 220 (377)
T d1vjoa_ 155 STGARQPLEGVGELCREFGTLLLVDTVTSLGGV-----PIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSS 220 (377)
T ss_dssp TTTEECCCTTHHHHHHHHTCEEEEECTTTTTTS-----CCCTTTTTCSEEECCSSSTTCSCSSCEEEEECH
T ss_pred cceeeechhhhhhhhhhccceEEEecchhhhhh-----hhcccccccceeeecccccccCCCEEEEecchh
Confidence 467789999999999999999999999998864 34455 899999999999999988 4554444
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.72 E-value=4.8e-17 Score=155.81 Aligned_cols=174 Identities=14% Similarity=0.112 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-ccCCCEEEecCCCCCcccccccccchhccccCCc
Q 018300 144 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (358)
Q Consensus 144 ~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (358)
+.++++|+. ++++||.++ .+.++|||.|+++++.++ +++||+|++++..+.+.. ..+...|.
T Consensus 21 ~~~~~fE~~----~~~~~~~~~-----~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~--------~~~~~~g~ 83 (374)
T d1o69a_ 21 EFVNRFEQS----VKDYSKSEN-----ALALNSATAALHLALRVAGVKQDDIVLASSFTFIASV--------APICYLKA 83 (374)
T ss_dssp HHHHHHHHH----HHHHHCCSE-----EEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGT--------HHHHHTTC
T ss_pred HHHHHHHHH----HHHHHCcCe-----EEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhH--------HHHhhccc
Confidence 557778875 788999987 377899999999999999 999999999886544322 23445565
Q ss_pred eEEEEeceecCCCCCCCHHHHH--HHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccC
Q 018300 223 YFESMPYRLDESTGLVDYDMLE--KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300 (358)
Q Consensus 223 ~~~~~~~~~~~~~~~iD~d~le--~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~ 300 (358)
+++.+++++++...+.+..+ ... ..++++|++. +.+|...|+++|.++|+++|++||.|+||+.|....+..
T Consensus 84 --~pv~~Di~~~~~~~~~~~~~~~~~~-~~~~~aii~~-~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~-- 157 (374)
T d1o69a_ 84 --KPVFIDCDETYNIDVDLLKLAIKEC-EKKPKALILT-HLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKA-- 157 (374)
T ss_dssp --EEEEECBCTTSSBCHHHHHHHHHHC-SSCCCEEEEE-CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEE--
T ss_pred --eeEecccccccccccccccccchhc-cccccccccc-ccccchhhhHHHHHHhhccCcchhhhhhhhhcceECCee--
Confidence 67787888655455554433 322 2356766653 457888999999999999999999999999998765532
Q ss_pred CCC-CCcEEEEcCc--CcCccCcEEEEEEeCCCCchhHHHHHHhhccCC
Q 018300 301 PFK-YCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNAVFP 346 (358)
Q Consensus 301 pl~-gaDiv~~S~h--K~L~Gp~GG~I~~~~~~~~~~~~~~~i~~~~f~ 346 (358)
+. ..|+.++|+| |.+.+..||+++++++ ++.+++......
T Consensus 158 -~G~~gd~~~fSf~~~K~l~tgeGG~i~tnn~-----~~~~~~~~~~~~ 200 (374)
T d1o69a_ 158 -LGTFGEFGVYSYNGNKIITTSGGGMLIGKNK-----EKIEKARFYSTQ 200 (374)
T ss_dssp -TTSSSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHHHHHTBT
T ss_pred -cCCCCceEEEeccCccccccccceeehhhhH-----HHHHhhcccccc
Confidence 33 5698888887 8898888999999987 777777655443
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.72 E-value=3.4e-17 Score=158.12 Aligned_cols=229 Identities=14% Similarity=0.101 Sum_probs=149.8
Q ss_pred cccccccChHHHHHHHHHHHHh-hhccccc-----ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHH
Q 018300 80 DYSLGEADPEVCEIITKEKERQ-FKSLELI-----ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 153 (358)
Q Consensus 80 ~~~l~~~d~~~~~~i~~e~~~~-~~~i~li-----as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~ 153 (358)
+++++.+.|...-.|.+...+. ..+.++| .++-.+|+.+++++...+.+.. .+|+. ..|.+ ++.+.+
T Consensus 4 ~~~~~~~~~s~~~~i~~~a~~~~~~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~-~~Y~~---~~G~~---~lR~ai 76 (388)
T d1j32a_ 4 AARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGK-TRYGP---AAGEP---RLREAI 76 (388)
T ss_dssp CHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CSCCC---TTCCH---HHHHHH
T ss_pred hhHhhcCCcCHHHHHHHHHHHHHHCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCCH---HHHHHH
Confidence 4566777776543333333322 2454444 2344568999999988776433 24443 22443 566667
Q ss_pred HHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec
Q 018300 154 QKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (358)
Q Consensus 154 ~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~ 232 (358)
.+++.+.+|..-. . -+|.+++|+ +|+..++.++++|||+|++++|.|.++.. .+...+.. .+.++.+
T Consensus 77 a~~~~~~~g~~~~-~-~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~~~~--~v~~~~~ 144 (388)
T d1j32a_ 77 AQKLQRDNGLCYG-A-DNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPE--------MVKLAEGT--PVILPTT 144 (388)
T ss_dssp HHHHHHHHCCCCC-G-GGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHHHTTCE--EEEECCC
T ss_pred HHHHHHhcccCCC-C-ceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHH--------HHHHhcCe--EEEEecc
Confidence 7778778776532 1 246667775 69999999999999999999987765432 23345543 3444444
Q ss_pred CC-CCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC---
Q 018300 233 ES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--- 303 (358)
Q Consensus 233 ~~-~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--- 303 (358)
++ +..+|++++++.+.. +++++++..++||+ ..+ +++|.++|+++|++|++|++|. .+...+..+.++.
T Consensus 145 ~~~~~~~d~~~l~~~~~~-~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~-~~~~~~~~~~s~~~~~ 222 (388)
T d1j32a_ 145 VETQFKVSPEQIRQAITP-KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYE-KILYDDAQHLSIGAAS 222 (388)
T ss_dssp GGGTTCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGGSC
T ss_pred cccccCCCHHHHHHhCCC-CCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhh-cccccCCCCCCHHHhC
Confidence 33 347999999998764 67877776666654 444 7788889999999999999975 3343332222221
Q ss_pred ----CCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 304 ----YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 304 ----gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
.-.+++.|++|++ +|.|.|+++++++
T Consensus 223 ~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~ 254 (388)
T d1j32a_ 223 PEAYERSVVCSGFAKTYAMTGWRVGFLAGPVP 254 (388)
T ss_dssp HHHHHTEEEEEESTTTTTCTTTCCEEEECCHH
T ss_pred cccccceeEecCChhhhhcchhHeEEEEECHH
Confidence 1247889999996 6889999998874
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.72 E-value=1.9e-17 Score=160.09 Aligned_cols=186 Identities=21% Similarity=0.208 Sum_probs=135.2
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
+|.+.|. |++..+.+|+ +++++.|.+.+ +.+.||+.|+. ++.+++++||+|++.+..||+.....
T Consensus 40 ~~~Y~R~--~nPt~~~le~----~la~LE~~~~a-----~~fsSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~--- 104 (380)
T d1ibja_ 40 PYDYTRS--GNPTRDALES----LLAKLDKADRA-----FCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLL--- 104 (380)
T ss_dssp SCSBTTT--CCHHHHHHHH----HHHHHHTCSEE-----EEESSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHH---
T ss_pred CceeeCC--CChHHHHHHH----HHHHHcCCceE-----EehhhHHHHHH-HHHHhhCCCCEEEEEecccccccchh---
Confidence 4555554 7888888776 47889998763 67899999986 56788999999999988888753311
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHcCCEEEEeccccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~g~~livD~Ah~~ 290 (358)
.+.....|. +...+ + ..|.+++++.+.. ++|+|+++.+.+| ...|+++|+++||++|+++++|++.+.
T Consensus 105 -~~~~~~~gi--~~~~~--d----~~~~~~~~~ai~~-~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~at 174 (380)
T d1ibja_ 105 -SQVVPRSGV--VVKRV--N----TTKLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 174 (380)
T ss_dssp -HHTSGGGTC--EEEEE--C----TTSHHHHHHHCCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTC
T ss_pred -hhhhccccc--ccccc--C----cchHHHHHHHhcc-CccEEEeccccccccccccHHHHHHHHHHcCCeEEeeccccc
Confidence 011223354 33332 2 3478899988764 7899999988877 478999999999999999999998543
Q ss_pred cccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhhc-cCCccccccc
Q 018300 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNA-VFPGLQVGFV 353 (358)
Q Consensus 291 Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~~-~f~g~q~~~~ 353 (358)
. ....|++ |||+++.|+.|++.|.. ||.++.+++ ++.+++... ...|..-+|+
T Consensus 175 P-----~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~-----~~~~~~~~~~~~~G~~l~p~ 232 (380)
T d1ibja_ 175 P-----VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-----KLAKEVYFLQNSEGSGLAPF 232 (380)
T ss_dssp T-----TTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSH-----HHHHHHHHHHHHTTCBCCHH
T ss_pred c-----ccccccccCCCEEEecccceeccccCccccccccchh-----hHHHHHHhhccccCCcCCHH
Confidence 3 3457888 99999999999998864 588888765 566665443 2344444444
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.72 E-value=3.5e-17 Score=158.90 Aligned_cols=170 Identities=18% Similarity=0.106 Sum_probs=126.7
Q ss_pred CCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccc
Q 018300 132 EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFM 211 (358)
Q Consensus 132 ~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~ 211 (358)
.||.+.|. |++..+.+|+. ++++.|.+. .+.+.||+.|+..++.+++++||+|++.+..||+.....
T Consensus 57 ~~~~Y~R~--~nPt~~~LE~~----la~LEgg~~-----a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~-- 123 (398)
T d1qgna_ 57 ASFEYGRY--GNPTTVVLEEK----ISALEGAES-----TLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFI-- 123 (398)
T ss_dssp CCCCBGGG--CCHHHHHHHHH----HHHHHTCSE-----EEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHH--
T ss_pred CCceecCC--CChHHHHHHHH----HHHHhCCce-----EEEecCcchHHHHHHhhcccccccccccccccchhhhhh--
Confidence 46777775 78888888774 788999876 367899999999999999999999999988787743211
Q ss_pred cchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCCHHHHHHHHHHcCCEEEEecccc
Q 018300 212 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHI 289 (358)
Q Consensus 212 ~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~dl~~I~~ia~e~g~~livD~Ah~ 289 (358)
. +.....|. +...++ ..|.++.++.+...++++|+++.+.+|. ..|+++|+++||++|+++++|++-+
T Consensus 124 ~--~~~~~~gi--~~~~~~------~~~~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~a 193 (398)
T d1qgna_ 124 E--TILPKMGI--TATVID------PADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFA 193 (398)
T ss_dssp H--HTGGGGTC--EEEEEC------SSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred c--cccccccc--cccccc------ccchhhhhhhhccccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceee
Confidence 0 11223344 333322 1244545544444578999999888774 7899999999999999999999833
Q ss_pred ccccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCC
Q 018300 290 SGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (358)
Q Consensus 290 ~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~ 329 (358)
.+....|++ |+|+++.|+.|++.|.. ||.+..+++
T Consensus 194 -----tP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~ 232 (398)
T d1qgna_ 194 -----TPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLK 232 (398)
T ss_dssp -----CTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHH
T ss_pred -----ccccCCchhhCCCEEEEechhhcCcccceeehhhcchhh
Confidence 344567888 99999999999998874 577776653
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.71 E-value=1.8e-16 Score=152.15 Aligned_cols=230 Identities=12% Similarity=0.032 Sum_probs=147.3
Q ss_pred cccccccChHHHHHHHHHHHHhhhcccccccC--CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHH
Q 018300 80 DYSLGEADPEVCEIITKEKERQFKSLELIASE--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (358)
Q Consensus 80 ~~~l~~~d~~~~~~i~~e~~~~~~~i~lias~--n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~l 157 (358)
+++++.+.+.-...+-+.....++-|+|-.++ ..+|+.|++++.+.+.+.. .+|+. ..|.. ++++.+.+++
T Consensus 3 s~~~~~~~~s~ir~~~~~~~~~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~-~~Y~~---~~G~~---~lr~aia~~~ 75 (388)
T d1gdea_ 3 SDRLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGL-THYGP---NIGLL---ELREAIAEKL 75 (388)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHCTTCEECCCCSCCSCCCHHHHHHHHHHHHTTC-CSCCC---TTCCH---HHHHHHHHHH
T ss_pred hhhhhhCCccHHHHHHHHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCc-cCCCC---CcCCH---HHHHHHHHHH
Confidence 34444444443333333333334556665443 3678999999988876532 34543 12443 5666666666
Q ss_pred HHHcCCCCCCCcceEEeCCC-HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-C
Q 018300 158 LAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-T 235 (358)
Q Consensus 158 a~lfg~~~~~~~v~V~~~SG-t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~ 235 (358)
.+..+...... .+|.+++| ++++..++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ +
T Consensus 76 ~~~~~~~~~~~-~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~~~~~~~~~~~~ 144 (388)
T d1gdea_ 76 KKQNGIEADPK-TEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAP--------AVILAGG--KPVEVPTYEEDE 144 (388)
T ss_dssp HHHHCCCCCTT-TSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHH--------HHHHHTC--EEEEEECCGGGT
T ss_pred HhhccccCCCh-heeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHH--------HHHHcCC--EEEEeecccccC
Confidence 66555432111 23555555 569999999999999999999987766532 2344565 4445555543 3
Q ss_pred CCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CC---CHHHHHHHHHHcCCEEEEeccccccccccCCccCCC---CC---
Q 018300 236 GLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY--- 304 (358)
Q Consensus 236 ~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~g--- 304 (358)
..+|+++|++.+.+ +++++++..++||+ .. ++++|.++|+++|++|++|++|. .+...+....++ ++
T Consensus 145 ~~~d~~~l~~~~~~-~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~-~~~~~~~~~~~~~~~~~~~~ 222 (388)
T d1gdea_ 145 FRLNVDELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYE-HFIYDDARHYSIASLDGMFE 222 (388)
T ss_dssp TCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCTTCCCCCGGGSTTCGG
T ss_pred CCCCHHHHHHhCcc-CCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCCh-hhhhccCCCCChhhccCCCC
Confidence 47999999998764 67888876666653 44 47789999999999999999976 343333211121 21
Q ss_pred CcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 305 CDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 305 aDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
-.+++.|++|++ +|.|.|++++.++
T Consensus 223 ~~i~~~S~SK~~~~~GlR~G~ii~~~~ 249 (388)
T d1gdea_ 223 RTITVNGFSKTFAMTGWRLGFVAAPSW 249 (388)
T ss_dssp GEEEEEESTTTTTCGGGCCEEEECCHH
T ss_pred eEEEEeCChhhccCccccEEEEEeecc
Confidence 237889999986 6888999999874
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.71 E-value=7.2e-17 Score=154.78 Aligned_cols=197 Identities=14% Similarity=0.105 Sum_probs=142.5
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh-ccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-l~pG 192 (358)
..++-++++.+.+.+.+ +-.| +.++++|+. ++++||.+++ +.++|||.|+.+++.++ +++|
T Consensus 10 ~~~~~~~~v~~~l~~~~--------~~~G-~~v~~fE~~----~~~~~g~k~a-----i~~~Sgt~Al~~al~al~~~~~ 71 (371)
T d2fnua1 10 LDKEDKKAVLEVLNSKQ--------LTQG-KRSLLFEEA----LCEFLGVKHA-----LVFNSATSALLTLYRNFSEFSA 71 (371)
T ss_dssp CCHHHHHHHHHHHTSSC--------CSSS-HHHHHHHHH----HHHHHTCSEE-----EEESCHHHHHHHHHHHSSCCCT
T ss_pred CCHHHHHHHHHHHcCCC--------ccCC-HHHHHHHHH----HHHHHCcCeE-----EEEecHHHHHHHHHHHhcccCC
Confidence 44555667666664332 1123 567788864 7889999983 77899999999999998 6665
Q ss_pred C--EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHH
Q 018300 193 D--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPR 270 (358)
Q Consensus 193 D--~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~ 270 (358)
| +|+++...+-+.+ .++...|. +++.+++++++ .++.+++++.+.. ++++|++. +.+|...|+++
T Consensus 72 ~~~eVi~p~~t~~a~~--------~ai~~~G~--~pv~vDi~~~~-~~~~~~~~~~~~~-~t~avi~v-h~~G~~~~~~~ 138 (371)
T d2fnua1 72 DRNEIITTPISFVATA--------NMLLESGY--TPVFAGIKNDG-NIDELALEKLINE-RTKAIVSV-DYAGKSVEVES 138 (371)
T ss_dssp TSCEEEECSSSCTHHH--------HHHHHTTC--EEEECCBCTTS-SBCGGGSGGGCCT-TEEEEEEE-CGGGCCCCHHH
T ss_pred CCCeeecccccccccc--------eeeeccCc--ccccccccccc-cccchhhhhhccc-hhhccccc-ccccccccccc
Confidence 5 8999875433321 24455675 77888888765 5566777776653 67776654 46788899999
Q ss_pred HHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcC--cCcCccCcEEEEEEeCCCCchhHHHHHHhhccCCcc
Q 018300 271 MRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTT--HKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL 348 (358)
Q Consensus 271 I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~--hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~~~~f~g~ 348 (358)
|.++|+++|+++|.|+||+.|....+..... ..|+.++|+ .|.+.+..||+|+++++ ++.+++......|.
T Consensus 139 i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~--~g~~~~~Sf~~~K~l~~g~GG~i~t~~~-----~~~~~~~~~~~~g~ 211 (371)
T d2fnua1 139 VQKLCKKHSLSFLSDSSHALGSEYQNKKVGG--FALASVFSFHAIKPITTAEGGAVVTNDS-----ELHEKMKLFRSHGM 211 (371)
T ss_dssp HHHHHHHHTCEEEEECTTCTTCEETTEETTS--SSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHHHHHTBTTE
T ss_pred ccccccccchhhccchhhccCceeccccCCc--cccccccccccccccccccceEEEeech-----hhhhhccccccccc
Confidence 9999999999999999999987655432222 456666665 59998888999999997 88888877555443
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=5.4e-17 Score=155.21 Aligned_cols=191 Identities=14% Similarity=0.105 Sum_probs=137.9
Q ss_pred cccccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHH
Q 018300 106 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (358)
Q Consensus 106 ~lias~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~ 185 (358)
.++|++..+++.|++||.....+ +.+.++.+.+++ +++.++++|+.+++ +.+++.|||.|+.+++
T Consensus 3 L~~PGP~~v~~~V~~am~~~~~~-----------hr~~~f~~i~~~-~~~~l~~ll~~~~~---~i~~~gsgT~a~e~~~ 67 (348)
T d1iuga_ 3 LLTPGPVRLHPKALEALARPQLH-----------HRTEAAREVFLK-ARGLLREAFRTEGE---VLILTGSGTLAMEALV 67 (348)
T ss_dssp ECSSSSCCCCHHHHHHHHSCCCC-----------TTSHHHHHHHHH-HHHHHHHHHTCSSE---EEEEESCHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHhcCCCCC-----------CCCHHHHHHHHH-HHHHHHHHhCCCCC---EEEEeCchHHHHHHHH
Confidence 47899999999999999754322 124555555554 79999999998764 5566778999999999
Q ss_pred HHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC--CCCC
Q 018300 186 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA--SAYP 263 (358)
Q Consensus 186 ~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~--s~~~ 263 (358)
.++++|||+|++... |+++..+. ..+...+..++...++. ...++.+++ ...+++.+++.+ +++|
T Consensus 68 ~nl~~~g~~vlv~~~---G~f~~~~~---~~a~~~~~~~~~~~~~~---g~~~~~~~~----~~~~~~~v~~~h~eTstG 134 (348)
T d1iuga_ 68 KNLFAPGERVLVPVY---GKFSERFY---EIALEAGLVVERLDYPY---GDTPRPEDV----AKEGYAGLLLVHSETSTG 134 (348)
T ss_dssp HHHCCTTCEEEEEEC---SHHHHHHH---HHHHHTTCEEEEEECCT---TCCCCTTTS----CCSSCSEEEEESEETTTT
T ss_pred Hhcccccccceeecc---hHHHHHHH---HHHHhcCcccccccccC---CCccccccc----cccCCCeeEEEecchhhh
Confidence 999999999988753 55553321 12334455455544322 234444332 234677776543 5578
Q ss_pred CCCCHHHHHHHHHHcC--CEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 264 RDFDYPRMRQIADAVG--ALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 264 ~~~dl~~I~~ia~e~g--~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
...|+++|.++|++++ +++++|+.+++|.. |.+++ ++|++++|.||+|.||.| |+++.+++
T Consensus 135 ~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~-----~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~ 200 (348)
T d1iuga_ 135 ALADLPALARAFKEKNPEGLVGADMVTSLLVG-----EVALEAMGVDAAASGSQKGLMCPPGLGFVALSPR 200 (348)
T ss_dssp EECCHHHHHHHHHHHCTTCEEEEECTTTBTTB-----CCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHH
T ss_pred hhccHHHHHHHHHhhhccceeechhhhccccc-----ccccccccCCEEEeccccceecCCceeeeeechH
Confidence 8999999999999985 89999999887754 34555 799999999999999999 88888773
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.70 E-value=3.6e-17 Score=157.03 Aligned_cols=156 Identities=22% Similarity=0.202 Sum_probs=109.8
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEE-EecCCCCCcccccccccchhccccCCceEEEEecee
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRI-MGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~V-l~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~ 231 (358)
.++..++.|+.++.+ ..+.+++|++|+.+++.++. |||.| ++++ ..+|.++. ..+.+.|.. ++ +.
T Consensus 55 l~~~~~~~~~~~~~e--~~~~~~~~~~a~~~~l~al~-~~~~vi~~~~--~~~~~~~~-----~~~~l~g~~--~v--~~ 120 (366)
T d2aeua1 55 VNEYGLKHLGGDEND--KCVGFNRTSSAILATILALK-PKKVIHYLPE--LPGHPSIE-----RSCKIVNAK--YF--ES 120 (366)
T ss_dssp HHHHHHHHHTCCTTE--EEEEESSHHHHHHHHHHHHC-CSEEEEECSS--SSCCTHHH-----HHHHHTTCE--EE--EE
T ss_pred HHHHHHHHccCCCcc--EEEEeCCHHHHHHHHHHHhC-CCCEEEEecC--CCcchhHH-----HHHHhcCCe--EE--CC
Confidence 344456677776543 23456677889999999865 55555 4433 12343321 134556653 22 22
Q ss_pred cCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCC---CCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcE
Q 018300 232 DESTGLVDYDMLEKTAILFRPKLIIAGASAYPRD---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDV 307 (358)
Q Consensus 232 ~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~---~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDi 307 (358)
+ |++++++.+++ ++|+|+++.++++.. .|+++|+++|+++|+++++|++|..++......+.+++ ++|+
T Consensus 121 ~------d~e~l~~~i~~-~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di 193 (366)
T d2aeua1 121 D------KVGEILNKIDK-DTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADL 193 (366)
T ss_dssp S------CHHHHHTTCCT-TEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSE
T ss_pred C------CHHHHHHhcCC-CceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceE
Confidence 2 78999998875 789999887666543 46899999999999999999999877654333334445 8999
Q ss_pred EEEcCcCcCccCcEEEEEEeCC
Q 018300 308 VTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 308 v~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
+++|+||+++||++|+++++++
T Consensus 194 ~~~S~sK~~~g~~~G~i~~~~~ 215 (366)
T d2aeua1 194 VVTSTDKLMEGPRGGLLAGKKE 215 (366)
T ss_dssp EEEETTSSSSSCSCEEEEEEHH
T ss_pred EEecccccccccceeEEEecHH
Confidence 9999999999999999999984
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=3e-16 Score=149.18 Aligned_cols=202 Identities=12% Similarity=0.074 Sum_probs=140.9
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCC-HHHHHHHHHH
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTA 187 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SG-t~A~~~a~~a 187 (358)
.++-++|+.+++++.+.+.+.. .+|+. ..|. ++++.+.+++++.+|.+.+ . -+|.+++| ++|+..++.+
T Consensus 8 ~~df~~p~~i~eal~~~~~~~~-~~Y~~---~~g~----~lr~~ia~~~~~~~g~~~~-~-~~i~it~G~~~~l~~~~~~ 77 (361)
T d1d2fa_ 8 DMDFATAPCIIEALNQRLMHGV-FGYSR---WKND----EFLAAIAHWFSTQHYTAID-S-QTVVYGPSVIYMVSELIRQ 77 (361)
T ss_dssp SCSSCCCHHHHHHHHHHHTTCC-CCCCC---SCCH----HHHHHHHHHHHHHSCCCCC-G-GGEEEESCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhCCC-CCCCC---CCCH----HHHHHHHHHHHHHhCCCCC-c-ceEEEeCCHHHHHHHHhhh
Confidence 4456778999999988775432 25654 3343 3556677788888887632 1 24555555 4699999999
Q ss_pred hccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--C
Q 018300 188 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--D 265 (358)
Q Consensus 188 ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~ 265 (358)
+++|||+|++++|.|.++.. .....+..+..++++...+++.+|++++++.+...++|+|++..++||+ .
T Consensus 78 l~~~gd~Vlv~~P~y~~~~~--------~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~ 149 (361)
T d1d2fa_ 78 WSETGEGVVIHTPAYDAFYK--------AIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKV 149 (361)
T ss_dssp SSCTTCEEEEEESCCHHHHH--------HHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCC
T ss_pred ccccccccccccccccchhH--------HHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccccccccc
Confidence 99999999999987765532 2334565444445444444457999999998877688888887777654 3
Q ss_pred C---CHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC----CCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 266 F---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 266 ~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~----gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
. ++++|+++|+++|+++|+|++|. ++.+.+..+.++. .-.++..|++|++ +|.|.|+++....
T Consensus 150 ~s~~~~~~i~~~~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~ 221 (361)
T d1d2fa_ 150 WTCDELEIMADLCERHGVRVISDEIHM-DMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENS 221 (361)
T ss_dssp CCTTHHHHHHHHHHHTTCEEEEECTTT-TCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSH
T ss_pred cchhhhhhhhhhhhhhheeeeeccccc-ccccccccccccccccccccccccccccccccccccceeeecchh
Confidence 3 48899999999999999999975 5555444333332 2236778888864 7889999887653
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=5.8e-17 Score=157.22 Aligned_cols=168 Identities=16% Similarity=0.086 Sum_probs=127.2
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
+|-+.|+ |++..+.+|+. ++++-|.+. .+.+.||+.|+.+++.+++++||+|++.+..||+.... ..
T Consensus 49 ~~~Y~R~--~nPt~~~le~~----la~LEg~~~-----a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l--~~ 115 (391)
T d1cl1a_ 49 ELFYGRR--GTLTHFSLQQA----MCELEGGAG-----CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDF--CS 115 (391)
T ss_dssp CCCCTTT--CCHHHHHHHHH----HHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHH--HH
T ss_pred ceEeECC--CChhHHHHHHH----HHHHhCCcc-----EEEeccccceeeehhhcccCCCCeEEEecccccchhhh--hh
Confidence 3556664 78888888764 788999876 36789999999999999999999999998888875321 10
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHHHHc--CCEEEEeccc
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAV--GALLMMDMAH 288 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia~e~--g~~livD~Ah 288 (358)
+.+...|. ++..+ + ..|.+++++.+++ ++++|+++.+.+| ...|+++|+++|+++ |+++++|++-
T Consensus 116 --~~l~~~Gi--~~~~~--d----~~d~~~~~~~i~~-~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~ 184 (391)
T d1cl1a_ 116 --KILSKLGV--TTSWF--D----PLIGADIVKHLQP-NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTW 184 (391)
T ss_dssp --HTGGGGTC--EEEEE--C----TTCGGGGGGTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTT
T ss_pred --hccccccc--ccccc--c----Ccccccccccccc-ccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccc
Confidence 11223344 44442 2 2366778777654 7899999888777 478999999999875 9999999984
Q ss_pred cccccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCC
Q 018300 289 ISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (358)
Q Consensus 289 ~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~ 329 (358)
+ .+....|++ |+|+++.|+.|++.|.. ||.++.+++
T Consensus 185 a-----tP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~ 224 (391)
T d1cl1a_ 185 A-----AGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNAR 224 (391)
T ss_dssp T-----TTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTT
T ss_pred c-----chhhhcccccccceEEeecchhccccccccccceecccc
Confidence 3 344457888 99999999999998864 688887775
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=2.1e-16 Score=153.84 Aligned_cols=195 Identities=23% Similarity=0.282 Sum_probs=138.3
Q ss_pred ccCCCC----cHHHHHHHhhhhhcccCCCCCCCcCCCCc-HHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHH
Q 018300 109 ASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (358)
Q Consensus 109 as~n~~----s~~V~~al~~~l~~~~~~G~pg~r~~~G~-~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~ 183 (358)
+|++|+ +|.|+++....+ ++|..+..+.|...|+ +...++| +.+++++|.+. .++++||+.||..
T Consensus 51 ~s~dYLGl~~hp~v~~a~~~a~-~~~g~~~~~sr~~~g~~~~~~~lE----~~lA~~~g~e~-----al~~~SG~~An~~ 120 (401)
T d1fc4a_ 51 CANNYLGLANHPDLIAAAKAGM-DSHGFGMASVRFICGTQDSHKELE----QKLAAFLGMED-----AILYSSCFDANGG 120 (401)
T ss_dssp CCSCTTSCTTCHHHHHHHHHHH-HHHCSCCCSCHHHHCCBHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHT
T ss_pred EccccccccCCHHHHHHHHHHH-HHhCCCcccceeeccCcHHHHHHH----HHHHHhhcCCc-----eEEecchhhhhHH
Confidence 677774 899999998776 4565667666655554 3334444 45889999987 3678999999999
Q ss_pred HHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc-----CCeEEEEc
Q 018300 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAG 258 (358)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~-----~~klIi~~ 258 (358)
++.++.+++|.|+.....|.++.. .+...+.. ...++ ..|+++++++++.. +..+|+++
T Consensus 121 ~i~~l~~~~d~i~~d~~~h~s~~~--------G~~~~~a~--~~~~~------~~d~~~le~~~~~~~~~~~~~~liv~e 184 (401)
T d1fc4a_ 121 LFETLLGAEDAIISDALNHASIID--------GVRLCKAK--RYRYA------NNDMQELEARLKEAREAGARHVLIATD 184 (401)
T ss_dssp THHHHCCTTCEEEEETTCCHHHHH--------HHHTSCSE--EEEEC------TTCHHHHHHHHHHHHHTTCSSEEEEEE
T ss_pred HHHHhcCCCcEEEeCCcchHHHHc--------cccccCce--EEEEc------CCChHHHHHHHHHhhhcccCceEEEEc
Confidence 999999999999987765444321 23334432 22222 34667776655321 22466665
Q ss_pred C--CCCCCCCCHHHHHHHHHHcCCEEEEecccccccccc---CCc--cCCCCCCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 259 A--SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA---SVV--ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 259 ~--s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~---g~~--~~pl~gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
. +..|...|+++|.++|++||+++++|++|+.|.... |.. ....+.+|++++|++|.|+|+.||++.++++
T Consensus 185 gv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~Gg~v~g~~~ 262 (401)
T d1fc4a_ 185 GVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKE 262 (401)
T ss_dssp SEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECHH
T ss_pred CCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCcccccCCHH
Confidence 3 344667899999999999999999999999987653 211 1112268999999999999999999999883
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.68 E-value=4.8e-17 Score=160.23 Aligned_cols=165 Identities=16% Similarity=0.105 Sum_probs=111.8
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~ 231 (358)
++++++++||++.. ++++|||+ +|.+++.++++|||+|++....|.+.+..+ ..+.+....+.+.++
T Consensus 71 ae~~~A~~~ga~~a-----~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~-------~~l~~~~~~~~~~~~ 138 (462)
T d1c4ka2 71 AEKHAARVYNADKT-----YFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSA-------LAMAGGRPVYLQTNR 138 (462)
T ss_dssp HHHHHHHHTTCSEE-----EEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHH-------TTTTCCEEEEECEEE
T ss_pred HHHHHHHHhCCCeE-----EEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHH-------HHHhcCCceeeeccc
Confidence 45668999999873 66778876 677778899999999999988765543211 112333344444445
Q ss_pred cCCC-------CCCCHHHHHHHhhh--------cCC-eEEEEc-CCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccc
Q 018300 232 DEST-------GLVDYDMLEKTAIL--------FRP-KLIIAG-ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVA 294 (358)
Q Consensus 232 ~~~~-------~~iD~d~le~~i~~--------~~~-klIi~~-~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~ 294 (358)
++.. ..+|.+.+++.+.. .++ .++++. .+.+|...|+++|+++|+++|++|++|+||+.|...
T Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~ 218 (462)
T d1c4ka2 139 NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQF 218 (462)
T ss_dssp CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGS
T ss_pred ccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccc
Confidence 5432 13455555443321 133 344444 445688899999999999999999999999998876
Q ss_pred cCCccCCC---------C-CCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 295 ASVVADPF---------K-YCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 295 ~g~~~~pl---------~-gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
.+..+... + ++|++++|+||+++++.||.++..++
T Consensus 219 ~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~ 263 (462)
T d1c4ka2 219 IPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKD 263 (462)
T ss_dssp SGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEEC
T ss_pred cCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEecc
Confidence 54433211 1 56999999999999887766665443
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=2.8e-16 Score=153.43 Aligned_cols=171 Identities=19% Similarity=0.118 Sum_probs=126.6
Q ss_pred CCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccc
Q 018300 132 EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFM 211 (358)
Q Consensus 132 ~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~ 211 (358)
.||.+.|. |++..+.+|+. ++++.|.+. .+.+.||+.|+.+++.+++++||+|++.+..|||... ..
T Consensus 48 ~~~~YsR~--~nPT~~~LE~~----la~LE~~~~-----a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~--l~ 114 (421)
T d2ctza1 48 FGNIYSRI--MNPTVDVLEKR----LAALEGGKA-----ALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFN--QF 114 (421)
T ss_dssp GGGSCBTT--BCHHHHHHHHH----HHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHH--HH
T ss_pred CCceecCC--CCHHHHHHHHH----HHHHhCCCe-----EEEecChHHHHHHHHHhhcccccceeecCCcCCchhH--HH
Confidence 34556564 78888888874 788889876 3678999999999999999999999999888877432 11
Q ss_pred cchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCCHHHHHHHHHHcCCEEEEecccc
Q 018300 212 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHI 289 (358)
Q Consensus 212 ~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~dl~~I~~ia~e~g~~livD~Ah~ 289 (358)
. ..+...|. +...++.+ -+.+..++.++ .++|+|+++.+.+|. +.|+++|+++||++|+++++|++-+
T Consensus 115 ~--~~~~~~gi--~~~~~d~~-----~~~~~~~~~~~-~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a 184 (421)
T d2ctza1 115 K--VTLKRLGI--EVRFTSRE-----ERPEEFLALTD-EKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFG 184 (421)
T ss_dssp H--THHHHTTC--EEEECCTT-----CCHHHHHHHCC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGG
T ss_pred H--HHHhhccc--cceecccc-----cCcchhccccC-CCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEeccccc
Confidence 1 11223444 44443221 13345555554 478999999888874 7899999999999999999999843
Q ss_pred ccccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCC
Q 018300 290 SGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (358)
Q Consensus 290 ~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~ 329 (358)
. .+....|++ |||+++.|+.|++.|.. ||+|+.+++
T Consensus 185 ~----tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~ 224 (421)
T d2ctza1 185 M----GGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGN 224 (421)
T ss_dssp G----GGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSC
T ss_pred c----cceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCc
Confidence 1 223356888 99999999999998865 588888765
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=3.5e-17 Score=161.65 Aligned_cols=188 Identities=18% Similarity=0.215 Sum_probs=133.6
Q ss_pred CCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccc
Q 018300 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (358)
Q Consensus 134 ~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (358)
.+|.+.|++++.+.+||+. ++++||.++ .+++.||+.||..++.+++++||.++..+..+..+.+|.+...
T Consensus 64 ~~gd~~Y~~~~~~~~le~~----~a~l~G~~~-----~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~ 134 (467)
T d2v1pa1 64 MRGDEAFSGSRSYYALAES----VKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDT 134 (467)
T ss_dssp TSCCCCSSSCHHHHHHHHH----HHHHTCCSE-----EEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHH
T ss_pred cccchhhcCCchHHHHHHH----HHHHHCCCE-----EEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccc
Confidence 4455678899988888764 788999987 3778999999999999999999998888776666666554322
Q ss_pred h-hccccCCceEEEEece-------ecCCCCCCCHHHHHHHhhhcC---CeEEEEcCCC---CCCCC---CHHHHHHHHH
Q 018300 214 K-RRVSGTSIYFESMPYR-------LDESTGLVDYDMLEKTAILFR---PKLIIAGASA---YPRDF---DYPRMRQIAD 276 (358)
Q Consensus 214 ~-~~~~~~g~~~~~~~~~-------~~~~~~~iD~d~le~~i~~~~---~klIi~~~s~---~~~~~---dl~~I~~ia~ 276 (358)
. ..+...|..+..+..+ ..+..+.+|++++++.+.... +++|++...+ .+... ++++|.++|+
T Consensus 135 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~ 214 (467)
T d2v1pa1 135 TQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAK 214 (467)
T ss_dssp HHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHH
T ss_pred cHHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHH
Confidence 2 2234556543332211 112245799999999887543 3556654432 23333 5788999999
Q ss_pred HcCCEEEEeccccccccccCC------cc--------CCCCCCcEEEEcCcCcCccCcEEEEEEeCCC
Q 018300 277 AVGALLMMDMAHISGLVAASV------VA--------DPFKYCDVVTTTTHKSLRGPRGGMIFFKKDP 330 (358)
Q Consensus 277 e~g~~livD~Ah~~Gl~~~g~------~~--------~pl~gaDiv~~S~hK~L~Gp~GG~I~~~~~~ 330 (358)
+||++|++|+||..|....+. .. ..+..+|++++|+||.+.+|.||+++++++.
T Consensus 215 ~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~ 282 (467)
T d2v1pa1 215 KYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDS 282 (467)
T ss_dssp HTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGG
T ss_pred HcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCceeEEecchh
Confidence 999999999999877543211 00 0112689999999999999999999999873
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.65 E-value=7.2e-16 Score=149.80 Aligned_cols=195 Identities=21% Similarity=0.176 Sum_probs=140.3
Q ss_pred cccCCCC----cHHHHHHHhhhhhcccCCCCCCCcCCCCc-HHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHH
Q 018300 108 IASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (358)
Q Consensus 108 ias~n~~----s~~V~~al~~~l~~~~~~G~pg~r~~~G~-~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~ 182 (358)
.+|++|+ +|.++++....+. +|..|..++|...|+ +..+++|+ ++++++|.+. .+.++||..||.
T Consensus 50 FsSndYLGL~~~p~v~~a~~~al~-~yG~gs~~Sr~~~G~~~~h~~LE~----~lA~~~g~e~-----all~~sG~~An~ 119 (396)
T d2bwna1 50 WCGNDYLGMGQHPVVLAAMHEALE-AVGAGSGGTRNISGTTAYHRRLEA----EIAGLHQKEA-----ALVFSSAYNAND 119 (396)
T ss_dssp CSCSCTTSGGGCHHHHHHHHHHHH-HHCSCCCSBTTTBCCBHHHHHHHH----HHHHHTTCSE-----EEEESCHHHHHH
T ss_pred EEcccccCcCCCHHHHHHHHHHHH-HhCCCccccccccCCchHHHHHHH----HHHHHhCCCc-----eeeeecchHHHH
Confidence 4889986 8999999988765 576788888876665 44455655 5899999987 377899999999
Q ss_pred HHHHHh--ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc---CCeEEEE
Q 018300 183 EVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIA 257 (358)
Q Consensus 183 ~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~---~~klIi~ 257 (358)
.++.++ .++||.|+.....|.+. . ..+.+++..+ ..|+ ..|+++++++++.. +.++|++
T Consensus 120 ~~i~~l~~~~~~d~i~~D~~~Hasi------~--~g~~ls~a~~--~~f~------Hnd~~~l~~l~~~~~~~~~~~iv~ 183 (396)
T d2bwna1 120 ATLSTLRVLFPGLIIYSDSLNHASM------I--EGIKRNAGPK--RIFR------HNDVAHLRELIAADDPAAPKLIAF 183 (396)
T ss_dssp HHHHHHHHHSTTCEEEEETTCCHHH------H--HHHHHSCCCE--EEEC------TTCHHHHHHHHHHSCTTSCEEEEE
T ss_pred HHHHHHhcccCCCceeehhhhhhcc------c--hhhhccccCc--eEee------cchHHHhhhHHhhhcccCceeEEE
Confidence 999988 57899888776533221 1 1234455433 3333 33677777665432 3457776
Q ss_pred c--CCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCC---cc--CCCCCCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 258 G--ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASV---VA--DPFKYCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 258 ~--~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~---~~--~pl~gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
+ +|..|...|+++|.++|++||+.|++|.||++|..+... .. ...+..|++++|+.|.|+ -.||+|+++++
T Consensus 184 egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g-~~Gg~v~~~~~ 261 (396)
T d2bwna1 184 ESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYG-VFGGYIAASAR 261 (396)
T ss_dssp ESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTC-SCCEEEEECHH
T ss_pred EeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeeccccccc-ccccccchhHH
Confidence 5 344577899999999999999999999999999875321 10 111267999999999975 46899999874
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.65 E-value=1.2e-16 Score=158.18 Aligned_cols=182 Identities=16% Similarity=0.133 Sum_probs=126.7
Q ss_pred CCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchh
Q 018300 136 GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKR 215 (358)
Q Consensus 136 g~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~ 215 (358)
|...|+|.+.+.+||+. ++++||.++. +.++||+.||..++.++++|||+|+....-+. +..
T Consensus 67 GDd~Y~~dpt~~~lE~~----~a~l~G~e~a-----l~~~SGt~An~~a~~~l~~~Gd~Vi~~~~f~~-~~~-------- 128 (456)
T d1c7ga_ 67 GDEAYAGSENFYHLEKT----VKELFGFKHI-----VPTHQGRGAENLLSQLAIKPGQYVAGNMYFTT-TRF-------- 128 (456)
T ss_dssp CCCCSSSCHHHHHHHHH----HHHHHCCSEE-----EEESSHHHHHHHHHHHHCCTTEEEEESSCCHH-HHH--------
T ss_pred cchhccCCchHHHHHHH----HHHHhCCCeE-----EECCCHHHHHHHHHHHhcCCCCeEecCcchHH-HHH--------
Confidence 33457889988888875 7889999983 77899999999999999999999997542111 000
Q ss_pred ccccCCceEEEEece---------ecCCCCCCCHHHHHHHhhhcC---CeEEEEcCCCC---CCCC---CHHHHHHHHHH
Q 018300 216 RVSGTSIYFESMPYR---------LDESTGLVDYDMLEKTAILFR---PKLIIAGASAY---PRDF---DYPRMRQIADA 277 (358)
Q Consensus 216 ~~~~~g~~~~~~~~~---------~~~~~~~iD~d~le~~i~~~~---~klIi~~~s~~---~~~~---dl~~I~~ia~e 277 (358)
.+...|. ..+.+. .++.++.+|+++|++.+++.. +.++++..+++ |... ++++|.++|++
T Consensus 129 ~i~~~g~--~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~ 206 (456)
T d1c7ga_ 129 HQEKNGA--TFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMAST 206 (456)
T ss_dssp HHHHTTE--EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH
T ss_pred HHHHcCc--eeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHH
Confidence 1122232 222211 123456899999999987643 24666654432 3444 46788899999
Q ss_pred cCCEEEEecccccccccc------CCccC--------CCCCCcEEEEcCcCcCccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 278 VGALLMMDMAHISGLVAA------SVVAD--------PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 278 ~g~~livD~Ah~~Gl~~~------g~~~~--------pl~gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
||++++.|+||..|.... +.... .+..+|++++|+||.+.++.||+++++++ ++.++++.
T Consensus 207 ~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~GG~i~~~~~-----~l~~~~r~ 280 (456)
T d1c7ga_ 207 YGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDE-----EMFSAAKE 280 (456)
T ss_dssp HTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCH-----HHHHHHHH
T ss_pred cCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccceeEEEcCCH-----HHHHHHHH
Confidence 999999999998764210 00001 12368999999999999999999999886 66666554
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.64 E-value=1e-15 Score=145.85 Aligned_cols=225 Identities=16% Similarity=0.121 Sum_probs=147.8
Q ss_pred hcccccccChHHHHHHHHHHHHhhhccccc--ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHH
Q 018300 79 VDYSLGEADPEVCEIITKEKERQFKSLELI--ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKR 156 (358)
Q Consensus 79 ~~~~l~~~d~~~~~~i~~e~~~~~~~i~li--as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~ 156 (358)
++.+++.+.+.+|..+..- .+...-|+|- .++..+|+.+++|+...+... .+|+. ..|.. ++ |+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~l-a~~~~~I~ls~g~p~~~~p~~i~~al~~~l~~~--~~Y~~---~~G~~---el----r~a 69 (368)
T d1v2da_ 3 LHPRTEAAKESIFPRMSGL-AQRLGAVNLGQGFPSNPPPPFLLEAVRRALGRQ--DQYAP---PAGLP---AL----REA 69 (368)
T ss_dssp CCGGGGGC---CHHHHHHH-HHHHTCEECCCCSCSSCCCHHHHHHHHHHTTTS--CSCCC---TTCCH---HH----HHH
T ss_pred CChhhhhcCCCHHHHHHHH-hccCCCEEecCCCCCCCCCHHHHHHHHHHhhcc--cCCCC---CcCCH---HH----HHH
Confidence 4577788888988877643 3333446663 234467899999998876532 35554 22433 33 445
Q ss_pred HHHHcCCCCCCCcceEEeCC-CHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC
Q 018300 157 ALAAFNLDENKWGVNVQPLS-GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST 235 (358)
Q Consensus 157 la~lfg~~~~~~~v~V~~~S-Gt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 235 (358)
++++++++++ +|++++ +++|+..++.+++++||.|++.++.+..+.. .....|..+...+++...++
T Consensus 70 iA~~~~~~~~----~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~--------~~~~~g~~~~~~~~~~~~~~ 137 (368)
T d1v2da_ 70 LAEEFAVEPE----SVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLP--------DAFLAGAKARLVRLDLTPEG 137 (368)
T ss_dssp HHHHHTSCGG----GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEECEEETTE
T ss_pred HHhhcccCCc----ceeeccchHHHHHHHhhccccccccccccCCcchhhhh--------HHHhcCCccceecccccccc
Confidence 7888999875 344454 5569999999999999999998886654432 23345665555665555455
Q ss_pred CCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC---CCcE
Q 018300 236 GLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---YCDV 307 (358)
Q Consensus 236 ~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~---gaDi 307 (358)
..+|++++++.+.+ .+++|++..+++| ...+ +++|+++|+++|+++++|+++..... ....+.... ...+
T Consensus 138 ~~~d~~~l~~~~~~-~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~-~~~~~~~~~~~~~~~~ 215 (368)
T d1v2da_ 138 FRLDLSALEKALTP-RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTF 215 (368)
T ss_dssp EECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEE
T ss_pred ccCCHHHHHHhhcc-CceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcc-cccccccccccccccc
Confidence 68999999998764 5677777666665 4554 78899999999999999998764332 221111111 2335
Q ss_pred EEEcCcCc--CccCcEEEEEEeCCC
Q 018300 308 VTTTTHKS--LRGPRGGMIFFKKDP 330 (358)
Q Consensus 308 v~~S~hK~--L~Gp~GG~I~~~~~~ 330 (358)
++.|++|. ++|.|.|+++.+++.
T Consensus 216 ~~~~~sk~~~~~G~R~g~~~~~~~~ 240 (368)
T d1v2da_ 216 TVGSAGKRLEATGYRVGWIVGPKEF 240 (368)
T ss_dssp EEEEHHHHTTCGGGCCEEEECCTTT
T ss_pred eeecccccccccccccccccccccc
Confidence 55666655 467788999988864
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.64 E-value=1.8e-15 Score=146.73 Aligned_cols=169 Identities=21% Similarity=0.200 Sum_probs=127.1
Q ss_pred CCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccc
Q 018300 132 EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFM 211 (358)
Q Consensus 132 ~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~ 211 (358)
.||.+.|+ |++.++.+|+. ++++.|.+.+ +.+.||+.|+..++.+++++||+|++.+.-||+.....
T Consensus 49 ~~~~YsR~--~nPT~~~le~~----la~LEg~~~a-----~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~-- 115 (394)
T d1e5ea_ 49 SGYIYTRL--GNPTVSNLEGK----IAFLEKTEAC-----VATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALF-- 115 (394)
T ss_dssp CSCCBTTT--CCHHHHHHHHH----HHHHHTCSEE-----EEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHH--
T ss_pred CCceecCC--CCHHHHHHHHH----HHHHhCCcce-----eeeccchHHHHHHHHhhcccccccccccceeehhhHhH--
Confidence 36667665 78888888874 7889998863 67889999999999999999999999987777643211
Q ss_pred cchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCCHHHHHHHHH-HcCCEEEEeccc
Q 018300 212 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIAD-AVGALLMMDMAH 288 (358)
Q Consensus 212 ~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~dl~~I~~ia~-e~g~~livD~Ah 288 (358)
. ......|. ++..++ .-|.+++++.+++ ++|+|+++.+.+|. ..|++++.++++ ++|+++++|++-
T Consensus 116 ~--~~~~~~gi--~~~~~d------~~d~~~~~~~i~~-~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~ 184 (394)
T d1e5ea_ 116 E--HALTKFGI--QVDFIN------TAIPGEVKKHMKP-NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTF 184 (394)
T ss_dssp H--THHHHTTC--EEEEEC------TTSTTHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTT
T ss_pred H--HHhhccce--eeeccC------CCCHHHHHHhhcc-cccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcc
Confidence 0 11223454 333322 2366788888864 78999998877764 689999988666 478999999983
Q ss_pred cccccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCC
Q 018300 289 ISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (358)
Q Consensus 289 ~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~ 329 (358)
+ .+....|++ |+|+++.|+.|++.|.. ||.++++++
T Consensus 185 a-----tP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~ 224 (394)
T d1e5ea_ 185 C-----SPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKAD 224 (394)
T ss_dssp T-----CTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHH
T ss_pred c-----CcccCCchhcCCCEEEechhhhcCCCcccccccccchhh
Confidence 3 344567888 99999999999998864 588888774
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.63 E-value=6.4e-17 Score=155.62 Aligned_cols=197 Identities=16% Similarity=0.130 Sum_probs=130.0
Q ss_pred ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh
Q 018300 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (358)
Q Consensus 109 as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al 188 (358)
++..++|..|++++...+.+.+.+ +..+...+..+.+.+| .+|+++++++|+++++ .+++.++|++++.++...
T Consensus 34 as~g~~p~~v~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~e-~~R~~iA~llga~~~e---i~~~~~~T~~~~~~~~~~ 107 (404)
T d1qz9a_ 34 NSLGARPVAALARAQAVIAEEWGN--GLIRSWNSAGWRDLSE-RLGNRLATLIGARDGE---VVVTDTTSINLFKVLSAA 107 (404)
T ss_dssp TTSCCCBTTHHHHHHHHHHTCCCC--CGGGHHHHTSGGGHHH-HHHHHHHTTTTCCTTS---EEECSCHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHhcc--cCcccccchhHHHHHH-HHHHHHHHHhCCCCCc---EEEecCchHHHHHHhhhh
Confidence 667788999999999888766533 2211111112223444 4899999999999874 245556777877765432
Q ss_pred ------ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-
Q 018300 189 ------LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA- 261 (358)
Q Consensus 189 ------l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~- 261 (358)
..+||.|++.+..+....... ...+..+....... .+.++.+.+++.+.. ++++|.+.+.+
T Consensus 108 ~~~~~~~~~~~~vi~~~~~~~~~~~~~--------~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~-~T~lV~i~~v~~ 175 (404)
T d1qz9a_ 108 LRVQATRSPERRVIVTETSNFPTDLYI--------AEGLADMLQQGYTL---RLVDSPEELPQAIDQ-DTAVVMLTHVNY 175 (404)
T ss_dssp HHHHHHHSTTCCEEEEETTSCHHHHHH--------HHHHHHHHCSSCEE---EEESSGGGHHHHCST-TEEEEEEESBCT
T ss_pred hhhhcccCCCcEEEEeccccchHHHHH--------Hhhhheeeeeceec---cccccchhHHHhcCC-CceEEEEecccc
Confidence 468999888765443221110 00111111111111 245677888888764 78988876533
Q ss_pred -CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE--EEEEEeC
Q 018300 262 -YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG--GMIFFKK 328 (358)
Q Consensus 262 -~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G--G~I~~~~ 328 (358)
+|...|+++|+++|+++|+.+++|++|+.|.. +..++ ++|++++|.|||+.+|.| |+++.++
T Consensus 176 ~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~ 242 (404)
T d1qz9a_ 176 KTGYMHDMQALTALSHECGALAIWDLAHSAGAV-----PVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSP 242 (404)
T ss_dssp TTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTS-----CCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECT
T ss_pred cccceecHHHHhccccccccceeEEeecccccc-----ccccccccceEEEEechhhcccCCceEEEEEech
Confidence 58899999999999999999999999998864 23333 899999999999866554 4555444
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.63 E-value=2.6e-16 Score=153.52 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccCCCEEEecCCCCCcccccccccchhccccCCce
Q 018300 146 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY 223 (358)
Q Consensus 146 ~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~ 223 (358)
...+|.....++++++|.+.. ..+.+.+|+.++.+++.+. ..++++|+++...|.+.. +.+...|..
T Consensus 111 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~--------k~~~~~g~~ 179 (434)
T d2z67a1 111 MYALTNKILESFFKQLGLNVH---AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPI--------KAVSFVGMN 179 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCCCE---EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH--------HHHHHTTCE
T ss_pred HHHHHHHHHHHHHHhcCCCcc---eeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHH--------HHHHHhCCc
Confidence 445666666778899999874 2333344445777777775 448999999876443321 344566765
Q ss_pred EEEEeceecCCCCCCCHHHHHHHhhhc----CCeEEEEcCCCC--CCCCCHHHHHHHHHHcCCEEEEeccccccccccCC
Q 018300 224 FESMPYRLDESTGLVDYDMLEKTAILF----RPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASV 297 (358)
Q Consensus 224 ~~~~~~~~~~~~~~iD~d~le~~i~~~----~~klIi~~~s~~--~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~ 297 (358)
...++...+.+++.+|+++|++.+++. ++.+|++..+++ |...|+++|.++|+++|+++++|+||+.+....+.
T Consensus 180 ~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~ 259 (434)
T d2z67a1 180 MRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLE 259 (434)
T ss_dssp EEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHH
T ss_pred ceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccc
Confidence 555544345566789999999998652 455666665553 55778999999999999999999999865533221
Q ss_pred cc-CCCC-CCcEEEEcCcCcCccCcE-EEEEEeCCCCchhHHHHHHhhc
Q 018300 298 VA-DPFK-YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 298 ~~-~pl~-gaDiv~~S~hK~L~Gp~G-G~I~~~~~~~~~~~~~~~i~~~ 343 (358)
.+ .+.+ ++|++++|+||+|++|.| |+++.+++ ++.+++...
T Consensus 260 ~~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~-----~~~~~~~~~ 303 (434)
T d2z67a1 260 KLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDA-----EFIKEISLS 303 (434)
T ss_dssp HHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCH-----HHHHHHHTT
T ss_pred cccccccCCcceEEEcCccccccCCCccccccCcH-----HHHHHHHhh
Confidence 11 2334 899999999999999877 56666665 666666554
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.63 E-value=2.3e-15 Score=145.13 Aligned_cols=217 Identities=16% Similarity=0.169 Sum_probs=142.3
Q ss_pred HHHHHHHHHHhh-hccccc--ccCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCC
Q 018300 91 CEIITKEKERQF-KSLELI--ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENK 167 (358)
Q Consensus 91 ~~~i~~e~~~~~-~~i~li--as~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~ 167 (358)
|+.+.++..+.- +-++|- .++-++|+.|++|+...+.+. ..||+ .|.+ ++++.+++++++.+|.+..
T Consensus 19 ~~~~~~~~~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~-~~~Y~-----~g~~---~Lr~aia~~~~~~~g~~~~- 88 (394)
T d1c7na_ 19 WDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDET-VLGYT-----GPTE---EYKKTVKKWMKDRHQWDIQ- 88 (394)
T ss_dssp HHHHHHHCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHC-CCSSB-----CCCH---HHHHHHHHHHHHHHCCCCC-
T ss_pred HHHHHHHhHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhCC-CcCCC-----CCCH---HHHHHHHHHHHHhcCCCCC-
Confidence 555555333221 223443 234467899999998877643 23453 2443 6788888888888887642
Q ss_pred CcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceec--CCCCCCCHHHHH
Q 018300 168 WGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--ESTGLVDYDMLE 244 (358)
Q Consensus 168 ~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~iD~d~le 244 (358)
. -+|.+++|+ +|+..++.++++|||+|++.++.+.++.. .....|. +.+.++.. +....+|.+.++
T Consensus 89 ~-~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~--------~~~~~g~--~~v~~~~~~~~~~~~~d~~~~~ 157 (394)
T d1c7na_ 89 T-DWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFM--------AIKNQER--KIIECELLEKDGYYTIDFQKLE 157 (394)
T ss_dssp G-GGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHH--------HHHTTTC--EEEECCCEEETTEEECCHHHHH
T ss_pred C-cceEeeccchhhhhhhhccccccccccccccCcccchhh--------HHhhhhh--cccccccccccccccchhhhhh
Confidence 1 256666665 59999999999999999999876655422 2234444 33333222 222368999998
Q ss_pred HHhhhcCCeEEEEcCCCCCC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-------CCcEEEEcC
Q 018300 245 KTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTTT 312 (358)
Q Consensus 245 ~~i~~~~~klIi~~~s~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-------gaDiv~~S~ 312 (358)
..+...++|+|++..++||+ ..+ +++|+++|++++++|++|+++. .+++.+....+.. ..-+++.|+
T Consensus 158 ~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 236 (394)
T d1c7na_ 158 KLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHF-DLIMPGYEHTVFQSIDEQLADKTITFTAP 236 (394)
T ss_dssp HHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTT-TCBCTTCCCCCGGGSCHHHHTTEEEEECS
T ss_pred hhhccccceEEEecccccccceeccHHHhhhhhccccccceeEecccccc-ccccCCccccchhhhhcccccceeecccc
Confidence 87765568888887777764 444 6778899999999999999976 5554433222211 223778899
Q ss_pred cCcC--ccCcEEEEEEeCC
Q 018300 313 HKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 313 hK~L--~Gp~GG~I~~~~~ 329 (358)
+|++ +|.|.|++++.++
T Consensus 237 SK~~~~~G~R~g~~~~~~~ 255 (394)
T d1c7na_ 237 SKTFNIAGMGMSNIIIKNP 255 (394)
T ss_dssp HHHHTCGGGCCEEEECCCH
T ss_pred cccccccccccccccccCh
Confidence 9984 7889777777665
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.63 E-value=3.5e-15 Score=144.14 Aligned_cols=197 Identities=18% Similarity=0.086 Sum_probs=134.8
Q ss_pred CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCC-HHHHHHHHHHhcc
Q 018300 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILK 190 (358)
Q Consensus 112 n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SG-t~A~~~a~~all~ 190 (358)
-.+|+.+++++...+.+. ..+|+. ..|.+ ++.+.+.+++.+.+|.+.. . -+|.+++| ++++.+++.++++
T Consensus 45 f~~p~~i~~a~~~a~~~~-~~~Y~~---~~G~~---~LR~aia~~~~~~~g~~~~-~-~~i~i~~G~~~~~~~~~~~~~~ 115 (395)
T d1xi9a_ 45 FQPPEHMKEAYCKAIKEG-HNYYGD---SEGLP---ELRKAIVEREKRKNGVDIT-P-DDVRVTAAVTEALQLIFGALLD 115 (395)
T ss_dssp CCCCHHHHHHHHHHHHTT-CCSCCC---TTCCH---HHHHHHHHHHHHHHCCCCC-G-GGEEEESHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHhcC-CCCCCC---CCCCH---HHHHHHHHhhhhccccccc-c-cccccccccchhhhhhhhhhcC
Confidence 357889999998877543 234554 23443 5777777888888887642 2 24555665 4689999999999
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC-CCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCC
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD 267 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~d 267 (358)
+||+|++++|.|..+.. .+...|..+ +.++... ++..+|++++++.+.. +++++++..++||+ ..+
T Consensus 116 ~Gd~vlv~~P~y~~~~~--------~~~~~g~~~--v~v~~~~~~~~~~d~~~~~~~~~~-~~~~v~l~~P~NPTG~~~s 184 (395)
T d1xi9a_ 116 PGDEILVPGPSYPPYTG--------LVKFYGGKP--VEYRTIEEEDWQPDIDDIRKKITD-RTKAIAVINPNNPTGALYD 184 (395)
T ss_dssp TTCEEEEEESCCHHHHH--------HHHHTTCEE--EEEEEEGGGTSEECHHHHHHHCCT-TEEEEEEESSCTTTCCCCC
T ss_pred CCCEEEEcCCccccchh--------hhhhcCCEE--EEEeccccccccchHHHHHHhhcc-cccEEEecCCCCCccchhh
Confidence 99999999987655432 234566643 3443332 3457999999998754 67888777667664 444
Q ss_pred ---HHHHHHHHHHcCCEEEEeccccccccccCCccCCCC---CCc-EEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 268 ---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---YCD-VVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 268 ---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~---gaD-iv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
+++|+++|+++|++++.|.++. .+.+.+..+.+.. ... +++.|++|++ +|.|.|++++...
T Consensus 185 ~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~ 254 (395)
T d1xi9a_ 185 KKTLEEILNIAGEYEIPVISDEIYD-LMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDP 254 (395)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECTTT-TCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECT
T ss_pred HHHHHHHHhhhhhcCeeEEeccccc-cccccccccchhhcCCCCCEEEEeCcchhcccchhhcEeeEecCH
Confidence 6788999999999999999875 3444332222221 222 7788999986 6889998876543
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.62 E-value=3.3e-16 Score=153.03 Aligned_cols=183 Identities=7% Similarity=-0.031 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHHHHh---ccCCCEEEecCCCCCcccccccccchhccccCC
Q 018300 146 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (358)
Q Consensus 146 ~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~~al---l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (358)
..++|..+.+++++++|.+... ..+.+++||. ++.+++.++ ..++++|+++...|.+.. +.+...|
T Consensus 92 ~~~le~~~~~~~~~l~g~~~~~--~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~--------~a~~~~g 161 (445)
T d3bc8a1 92 LNKITNSLVLNVIKLAGVHSVA--SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF--------KSMVTAG 161 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCC--EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH--------HHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCCccc--CccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHH--------HHHHHcC
Confidence 4578888888999999998642 2344556665 555555554 457789999876543321 3456677
Q ss_pred ceEEEEeceecCCCCCCCHHHHHHHhhhc---CCeEEEEcCCC--CCCCCCHHHHHHHHHHcCCEEEEeccccccccccC
Q 018300 222 IYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAAS 296 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~iD~d~le~~i~~~---~~klIi~~~s~--~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g 296 (358)
.....+....+.+++.+|+++|++.+++. ++.+|++..++ +|...|+++|+++|+++|+++++|+||+.++....
T Consensus 162 ~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~ 241 (445)
T d3bc8a1 162 FEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCM 241 (445)
T ss_dssp CEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHH
T ss_pred CeeEEEEeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhcc
Confidence 75554543334456799999999988653 34566665544 46788999999999999999999999987654321
Q ss_pred Ccc-CC--CCCCcEEEEcCcCcCccCcE-EEEEEeCCCCchhHHHHHHhhc
Q 018300 297 VVA-DP--FKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 297 ~~~-~p--l~gaDiv~~S~hK~L~Gp~G-G~I~~~~~~~~~~~~~~~i~~~ 343 (358)
... .. +.++|++++|+||++.+|.| |+++.++. ++.+++...
T Consensus 242 ~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~-----~~~~~~~~~ 287 (445)
T d3bc8a1 242 HLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNE-----PFIQDISKM 287 (445)
T ss_dssp HHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCH-----HHHHHHHHH
T ss_pred ccchhccCcCCcceEEecCccccccCCCCceeeeCCh-----HHHHHHHHH
Confidence 111 11 22699999999999999987 56666654 566666543
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=6.3e-15 Score=142.35 Aligned_cols=201 Identities=17% Similarity=0.178 Sum_probs=143.0
Q ss_pred cccCCCC----cHHHHHHHhhhhhcccCCCCCCCcCCCCc-HHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHH
Q 018300 108 IASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (358)
Q Consensus 108 ias~n~~----s~~V~~al~~~l~~~~~~G~pg~r~~~G~-~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~ 182 (358)
.+|++|. +|.|+++....+. +|..|..++|...|. +...++|+ ++++++|.+. .+.++||+.||.
T Consensus 43 f~s~dYLGl~~~p~v~~a~~~a~~-~~G~~~~~sr~~~g~~~~~~~lE~----~LA~~~g~e~-----al~~~SG~~an~ 112 (383)
T d1bs0a_ 43 FSSNDYLGLSHHPQIIRAWQQGAE-QFGIGSGGSGHVSGYSVVHQALEE----ELAEWLGYSR-----ALLFISGFAANQ 112 (383)
T ss_dssp CSCCCTTSGGGCHHHHHHHHHHHH-HHCSCCCSBTTTTCCCHHHHHHHH----HHHHHHTCSE-----EEEESCHHHHHH
T ss_pred EEcccccccCCCHHHHHHHHHHHH-HhCCCCCccccccCcchHHHHHHH----HHHHhcCCCc-----eEEecccchhhH
Confidence 3777775 8899999887764 576788888877665 44455555 5889999886 377899999999
Q ss_pred HHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcC--CeEEEEcC-
Q 018300 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR--PKLIIAGA- 259 (358)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~--~klIi~~~- 259 (358)
.++.++..++|.|+.....|.+.. ......+. +...++ ..|++++++.+...+ .++|+++.
T Consensus 113 ~~i~al~~~~d~v~~d~~~h~si~--------~g~~~~~~--~~~~~~------hnd~~~le~~l~~~~~~~~~vv~e~v 176 (383)
T d1bs0a_ 113 AVIAAMMAKEDRIAADRLSHASLL--------EAASLSPS--QLRRFA------HNDVTHLARLLASPCPGQQMVVTEGV 176 (383)
T ss_dssp HHHHHHCCTTCEEEEETTCCHHHH--------HHHHTSSS--EEEEEC------TTCHHHHHHHHHSCCSSCEEEEEESB
T ss_pred HHHHhhcCCCceEEeeccccHHHh--------hccccCCC--cceEec------chHHHHHHHHhcccCCCceEEEecCC
Confidence 999999999999998765333211 12334444 333432 458899988876543 34666653
Q ss_pred -CCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCc--cCCCC-CCcEEEEcCcCcCccCcEEEEEEeCCCCchhH
Q 018300 260 -SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVE 335 (358)
Q Consensus 260 -s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~--~~pl~-gaDiv~~S~hK~L~Gp~GG~I~~~~~~~~~~~ 335 (358)
+..|...|+++|.++|++||+++++|+||+.|....... ..... ..|+++.++.|.+++ .||+++++. +
T Consensus 177 ~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~-~Gg~v~~~~------~ 249 (383)
T d1bs0a_ 177 FSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGV-SGAAVLCSS------T 249 (383)
T ss_dssp CTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSS-CCEEEEECH------H
T ss_pred CCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccccc-cccccccch------h
Confidence 346788999999999999999999999999987653211 01112 456888899998754 578888887 4
Q ss_pred HHHHHh
Q 018300 336 LESAIN 341 (358)
Q Consensus 336 ~~~~i~ 341 (358)
+.+.+.
T Consensus 250 ~~~~l~ 255 (383)
T d1bs0a_ 250 VADYLL 255 (383)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=8.8e-16 Score=148.81 Aligned_cols=185 Identities=16% Similarity=0.152 Sum_probs=130.5
Q ss_pred CCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCccccccccc
Q 018300 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (358)
Q Consensus 133 G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (358)
+|.+.|. |++.++.+|+. ++++.|.+. .+.+.||+.|+.++ ..++++||+|++.+..||+... ...
T Consensus 46 ~y~YsR~--gnPT~~~lE~~----la~LE~~~~-----a~~~sSGmaAi~~~-l~~l~~gd~iv~~~~~yg~t~~--~~~ 111 (393)
T d1n8pa_ 46 TYEYSRS--QNPNRENLERA----VAALENAQY-----GLAFSSGSATTATI-LQSLPQGSHAVSIGDVYGGTHR--YFT 111 (393)
T ss_dssp SCCBTTT--CCHHHHHHHHH----HHHHTTCSE-----EEEESCHHHHHHHH-HHTSCSSCEEEEESSCCHHHHH--HHH
T ss_pred CeeeeCC--CChHHHHHHHH----HHHHhCCce-----EEEecCchhHHHhh-hhcccCCCeeeeeeeecccchh--hhh
Confidence 3555554 78888888874 788989876 36789999888654 5778999999998877776432 110
Q ss_pred chhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCCHHHHHHHHH----HcCCEEEEec
Q 018300 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIAD----AVGALLMMDM 286 (358)
Q Consensus 213 ~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~dl~~I~~ia~----e~g~~livD~ 286 (358)
..+...|.. +..+ + .+.+++++.++. ++|+|+++.+.+|. +.|+++|+++|| ++|+++++|+
T Consensus 112 --~~l~~~gi~--~~~~--~-----~~~~~~~~~i~~-~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDn 179 (393)
T d1n8pa_ 112 --KVANAHGVE--TSFT--N-----DLLNDLPQLIKE-NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179 (393)
T ss_dssp --HTSTTTCSC--CEEE--S-----SHHHHHHHHSCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEEC
T ss_pred --hhhhcccce--eEEe--e-----cchHHHHHHhhh-hcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEec
Confidence 112233432 2221 1 245788888764 78999999888774 789999999999 6789999999
Q ss_pred cccccccccCCccCCCC-CCcEEEEcCcCcCccCc---EEEEEEeCCCCchhHHHHHHhhc-cCCccccccc
Q 018300 287 AHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNA-VFPGLQVGFV 353 (358)
Q Consensus 287 Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L~Gp~---GG~I~~~~~~~~~~~~~~~i~~~-~f~g~q~~~~ 353 (358)
+-+.. ....|++ |||+++.|+.|++.|.. ||+|+.+++ ++.+++... ...|..-+|+
T Consensus 180 T~atP-----~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~-----~~~~~l~~~~~~~G~~~~p~ 241 (393)
T d1n8pa_ 180 TFLSP-----YISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNK-----PLYERLQFLQNAIGAIPSPF 241 (393)
T ss_dssp TTTHH-----HHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCH-----HHHHHHHHHHHHHCCCCCHH
T ss_pred CccCc-----ccCCchhhCCCEEEEccccccCCCCccccceeeecch-----hHHHHHHHHHhhcCCCCChH
Confidence 84432 3357888 99999999999998864 588887765 566666543 2344444444
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=7.7e-15 Score=140.01 Aligned_cols=197 Identities=16% Similarity=0.096 Sum_probs=131.2
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCC-CHHHHHHHHHHhccC
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS-GSPANFEVYTAILKP 191 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~S-Gt~A~~~a~~all~p 191 (358)
.+|+.+++++...+.+.. .+|+. ..|.+ ++++.+.+++.+.+|...+. .++.+++ +++|+..++.++++|
T Consensus 41 ~~p~~i~~~~~~~~~~~~-~~Y~~---~~G~~---~lR~aia~~~~~~~~~~~~~--~~i~~t~G~~~al~~~~~~l~~~ 111 (375)
T d1o4sa_ 41 PTPEPVVEEAVRFLQKGE-VKYTD---PRGIY---ELREGIAKRIGERYKKDISP--DQVVVTNGAKQALFNAFMALLDP 111 (375)
T ss_dssp CCCHHHHHHHHHHHTTCC-CCCCC---TTCCH---HHHHHHHHHHHHHHTCCCCG--GGEEEESHHHHHHHHHHHHHCCT
T ss_pred CCCHHHHHHHHHHHhcCC-cCCCC---CcCCH---HHHHHHHhhhhhcccccccc--ccccccCcHHHHHHHHHHHHhCC
Confidence 468999999988765533 35654 22444 57777777888788876432 2344444 556999999999999
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CC---
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF--- 266 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~--- 266 (358)
||+|++++|.+..+.. .....+......+...+ +...+|.+.++.... .+++++++..+++|+ ..
T Consensus 112 gd~vlv~~P~y~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~s~~ 181 (375)
T d1o4sa_ 112 GDEVIVFSPVWVSYIP--------QIILAGGTVNVVETFMS-KNFQPSLEEVEGLLV-GKTKAVLINSPNNPTGVVYRRE 181 (375)
T ss_dssp TCEEEEEESCCTTHHH--------HHHHTTCEEEEEECCGG-GTTCCCHHHHHHTCC-TTEEEEEEESSCTTTCCCCCHH
T ss_pred CCEEEEccCccccchh--------hhhcccccccccccccc-ccccchhHHHHHhhc-cCccEEEEeCCCCCccCCCCHH
Confidence 9999999886655432 22344543333333222 345788888887654 367788777667664 33
Q ss_pred CHHHHHHHHHHcCCEEEEeccccccccccCCccCCC---C--CCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 267 dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl---~--gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
++++|.++|++++++|+.|+++.. +...+....++ + .--+++.|++|++ +|.|.|++++.++
T Consensus 182 ~~~~i~~~a~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~ 250 (375)
T d1o4sa_ 182 FLEGLVRLAKKRNFYIISDEVYDS-LVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEK 250 (375)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTT-SBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHH
T ss_pred HHHHHHHhHHHcCCceehHhhhcc-ccccccccccccccCCCCCEEEEeechhhccCCcccccccccccc
Confidence 477888999999999999997653 33222111111 1 1237789999986 6889999999885
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.59 E-value=1.9e-14 Score=139.71 Aligned_cols=233 Identities=12% Similarity=0.074 Sum_probs=154.8
Q ss_pred hcccccccChHHHHHHHHHHHHhhhccccccc--CCCCcHHHHHHHhhhhhccc--CCCCCCCcCCCCcHHHHHHHHHHH
Q 018300 79 VDYSLGEADPEVCEIITKEKERQFKSLELIAS--ENFTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQ 154 (358)
Q Consensus 79 ~~~~l~~~d~~~~~~i~~e~~~~~~~i~lias--~n~~s~~V~~al~~~l~~~~--~~G~pg~r~~~G~~~~~~lE~~~~ 154 (358)
+..+++.+.+.+|..+.+...+ .+-|+|-.+ +..+|+.+++++...+.+.. ..+|+. ..|.. ++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~---~~G~~---~lReaiA 76 (418)
T d2r5ea1 4 LPKRYQGSTKSVWVEYIQLAAQ-YKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTR---GFGHP---RLVQALS 76 (418)
T ss_dssp CCGGGTTCCCCHHHHHHHHHHH-HCCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCC---TTCCH---HHHHHHH
T ss_pred hhhhhcCCCCCHHHHHHHHhcC-CCCEEccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCC---CCCCH---HHHHHHH
Confidence 5688999999999877664443 355666533 33467889999988765431 234543 22443 5677677
Q ss_pred HHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC
Q 018300 155 KRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (358)
Q Consensus 155 ~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~ 233 (358)
+++.+.+|.+.. +..+|.+++|+ +|+..++.++++|||.|+++++.|.++.. .+...|.....++++.+.
T Consensus 77 ~~~~~~~g~~~~-p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~g~~~~~v~~~~~~ 147 (418)
T d2r5ea1 77 KLYSQLVDRTIN-PMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEP--------MVKAAGGIPRFIPLKPNK 147 (418)
T ss_dssp HHHHHHHTSCCC-TTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEECEESC
T ss_pred HHHHHHhCCCCC-ccceEEEcCCCchhhhhhhhhccccccceeccccccchhhH--------HHHHcCCeEEEEEecccc
Confidence 888888887632 11246667776 59999999999999999999987665432 233456544444443321
Q ss_pred C-------CCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCCc-cC
Q 018300 234 S-------TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-AD 300 (358)
Q Consensus 234 ~-------~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~~ 300 (358)
. ...++.+++++... .+++++++..++||+ ..+ +++|+++|+++|+++|.|+++.. +...+.. ++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~-~~~~~~~~~s 225 (418)
T d2r5ea1 148 TGGTISSADWVLDNNELEALFN-EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEH-MVFEPFEHIR 225 (418)
T ss_dssp CSSCEEGGGEECCHHHHHHHCC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCTTCCCCC
T ss_pred cccchhhhhhhhhHHHHhhhhh-ccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhh-hccCCCcccc
Confidence 1 12477888887654 467888887677653 444 67788999999999999999753 3333321 11
Q ss_pred C--CCC---CcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 301 P--FKY---CDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 301 p--l~g---aDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
. +.. --+++.|++|++ +|.|-|++++.++
T Consensus 226 ~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~ 261 (418)
T d2r5ea1 226 ICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEA 261 (418)
T ss_dssp GGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCHH
T ss_pred ccccccccceeeeeecCCccccCCCcccccccccch
Confidence 1 111 227788999995 7889999999874
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.59 E-value=2.7e-14 Score=138.10 Aligned_cols=200 Identities=19% Similarity=0.136 Sum_probs=136.0
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCc-----ceEEeCCCH-HHHHHHHH
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWG-----VNVQPLSGS-PANFEVYT 186 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~-----v~V~~~SGt-~A~~~a~~ 186 (358)
.+++.+++++.+.+......||+. ..|.+ ++.+.+.+++.+.++.... ++ .+|.+++|+ +|+..++.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~LReaia~~~~~~~~~~~~-~~~~~~~~~I~it~G~~~al~~~~~ 119 (412)
T d1bw0a_ 47 LTSAAQIKKLKEAIDSQECNGYFP---TVGSP---EAREAVATWWRNSFVHKEE-LKSTIVKDNVVLCSGGSHGILMAIT 119 (412)
T ss_dssp CCCHHHHHHHHHHHHTTCSSSCCC---TTCCH---HHHHHHHHHHHHHHCCSTT-TGGGCCGGGEEEESHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhhCCCCCCCCC---CcCCH---HHHHHHHHHHHHhcCcccc-cCCCCCCCeEEEecccccchhhhhh
Confidence 456788888877666555556654 23444 5777777788877653210 00 146666665 59999999
Q ss_pred HhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCC-CCCCCHHHHHHHhhhcCCeEEEEcCCCCCC-
Q 018300 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR- 264 (358)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iD~d~le~~i~~~~~klIi~~~s~~~~- 264 (358)
++++|||+|++++|.|.++.. .+...|.. +++++++++ +..+|++++++.... +++++++..+++|+
T Consensus 120 ~l~~~Gd~Vlv~~P~y~~~~~--------~~~~~G~~--~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~np~NPtG 188 (412)
T d1bw0a_ 120 AICDAGDYALVPQPGFPHYET--------VCKAYGIG--MHFYNCRPENDWEADLDEIRRLKDD-KTKLLIVTNPSNPCG 188 (412)
T ss_dssp HHCCTTCEEEEEESCCTHHHH--------HHHHTTCE--EEEEEEEGGGTTEECHHHHHHHCCT-TEEEEEEESSCTTTC
T ss_pred hhhccccceeeeeccchhhhh--------hhhccCcc--ccccccccccccchhhHHHHhhhhc-ccccccccccccccc
Confidence 999999999999987766532 23456764 444445543 347899999987653 67877776666653
Q ss_pred -CC---CHHHHHHHHHHcCCEEEEeccccccccccCCccCCC-------CCC--cEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 265 -DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-------KYC--DVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 265 -~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl-------~ga--Div~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
.. ++++|.++|++++++|++|+++. ++.+.+..+.+. +.. -+++.|++|++ +|+|.|++++.++
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~vi~De~Y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~ 267 (412)
T d1bw0a_ 189 SNFSRKHVEDIVRLAEELRLPLFSDEIYA-GMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDP 267 (412)
T ss_dssp CCCCHHHHHHHHHHHHHHTCCEEEECTTT-TCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECT
T ss_pred ccchhhhccccccccccCCeeeechhhHH-HhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccch
Confidence 33 47888899999999999999975 666554332221 111 25677899985 6889999999876
Q ss_pred CC
Q 018300 330 PV 331 (358)
Q Consensus 330 ~~ 331 (358)
.+
T Consensus 268 ~~ 269 (412)
T d1bw0a_ 268 HG 269 (412)
T ss_dssp TC
T ss_pred hh
Confidence 43
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=3.3e-14 Score=140.10 Aligned_cols=228 Identities=11% Similarity=0.069 Sum_probs=149.3
Q ss_pred cccChH-HHHHHHHHHHHhh-hcccccc-cCCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHH
Q 018300 84 GEADPE-VCEIITKEKERQF-KSLELIA-SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (358)
Q Consensus 84 ~~~d~~-~~~~i~~e~~~~~-~~i~lia-s~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~l 160 (358)
+..+++ +|++|.+|...-. -.+++.. ..++++|.+.+.+...+...+.. +.-.+...++|..+.++++++
T Consensus 33 ~~~~~~~~~~~i~d~l~~dg~~~~n~asf~~t~~~~~~~~l~~~~~~~N~~~-------~~~~P~~~~lE~~~v~~la~L 105 (450)
T d1pmma_ 33 HEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWID-------KEEYPQSAAIDLRCVNMVADL 105 (450)
T ss_dssp SCCCHHHHHHHHHHHGGGSCCGGGBCSCCSCCCCCHHHHHHHHHTTTCBTTC-------TTTSHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHhcCCCC-------cccCccHHHHHHHHHHHHHHH
Confidence 444444 8888888765332 2245532 24577899999988776544321 111244568999999999999
Q ss_pred cCCCCCCC--cceEEeCCCHHHHHHHHHHhc-----------cCCC-EEEecCCCCCcccccccccchhccccCCceEEE
Q 018300 161 FNLDENKW--GVNVQPLSGSPANFEVYTAIL-----------KPHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 226 (358)
Q Consensus 161 fg~~~~~~--~v~V~~~SGt~A~~~a~~all-----------~pGD-~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~ 226 (358)
||++..+. ..-+.+++||+||+.++.+.- ++++ .++++.. .|.+. .+.+...|.+++
T Consensus 106 ~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~---~H~s~-----~Kaa~~~gi~~~- 176 (450)
T d1pmma_ 106 WHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP---VQICW-----HKFARYWDVELR- 176 (450)
T ss_dssp TTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESS---CCHHH-----HHHHHHTTCEEE-
T ss_pred hCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecc---cHHHH-----HHHHHHcCCCce-
Confidence 99854211 123566777889998886641 2333 3455432 34432 134566777544
Q ss_pred EeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC--CCCCCCCCHHHHHHHH------HHcCCEEEEeccccccccc-c-C
Q 018300 227 MPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA--SAYPRDFDYPRMRQIA------DAVGALLMMDMAHISGLVA-A-S 296 (358)
Q Consensus 227 ~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~--s~~~~~~dl~~I~~ia------~e~g~~livD~Ah~~Gl~~-~-g 296 (358)
.++++++++.+|+++|++.+++ ++.+|++.. +.+|...|+++|.++| +++|+++++|+|++.+... . .
T Consensus 177 -~v~~~~~~~~~d~~~L~~~i~~-~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~ 254 (450)
T d1pmma_ 177 -EIPMRPGQLFMDPKRMIEACDE-NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAP 254 (450)
T ss_dssp -ECCCBTTBCSCCHHHHHHHCCT-TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCT
T ss_pred -EeeecCCCCcCcHHHHHHHhhh-CceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeech
Confidence 4456766789999999999875 566666543 3356777888777765 5679999999998754331 1 1
Q ss_pred CccC--CCCCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 297 VVAD--PFKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 297 ~~~~--pl~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
.... .++++|.+++|+||++.+|.| |+++++++
T Consensus 255 ~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~ 290 (450)
T d1pmma_ 255 DIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDE 290 (450)
T ss_dssp TCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSG
T ss_pred hhhhhhcccceeEeecChhhccCCCCCeeEEEecCh
Confidence 1111 123899999999999999988 88998875
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.57 E-value=4.1e-15 Score=141.07 Aligned_cols=153 Identities=17% Similarity=0.204 Sum_probs=115.4
Q ss_pred HHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecC
Q 018300 154 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (358)
Q Consensus 154 ~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~ 233 (358)
+++++++.|.+.+ +.+.||+.|+..++.++++|||+|++++.-|||.... .. +.....|. ++..+ +
T Consensus 4 E~~la~Leg~~~a-----~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~--~~--~~l~~~gi--~~~~~--d- 69 (331)
T d1pffa_ 4 EGKIAKLEHAEAC-----AATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHAL--FE--HQLRKFGV--EVDFI--D- 69 (331)
T ss_dssp HHHHHHHHTCSEE-----EEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHH--HH--THHHHTTC--EEEEE--C-
T ss_pred HHHHHHHhCCCeE-----EEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHH--HH--HHHHhcCe--EEEEe--c-
Confidence 3468889998863 6789999999999999999999999998888775321 11 11233454 33443 2
Q ss_pred CCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHHHHHHHH-HHcCCEEEEeccccccccccCCccCCCC-CCcEEE
Q 018300 234 STGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIA-DAVGALLMMDMAHISGLVAASVVADPFK-YCDVVT 309 (358)
Q Consensus 234 ~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~~I~~ia-~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~ 309 (358)
.-|++.+++.+++ ++++|++..+.+| ...|++++++++ +++|+++++|++-+.. ....|++ |+|+++
T Consensus 70 ---~~d~~~~~~~i~~-~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp-----~~~~pl~~GaDiVv 140 (331)
T d1pffa_ 70 ---MAVPGNIEKHLKP-NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASP-----ILTNPLDLGVDIVV 140 (331)
T ss_dssp ---TTSTTHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHH-----HHCCGGGGTCSEEE
T ss_pred ---ccchhhHhhhccc-ccceeeeecccccccccccchhhhhhhhcccCceEEeecccccc-----ccccccccCCCEEE
Confidence 2377888888764 7899999877766 478999999875 6789999999984433 2347888 899999
Q ss_pred EcCcCcCccCc---EEEEEEeCC
Q 018300 310 TTTHKSLRGPR---GGMIFFKKD 329 (358)
Q Consensus 310 ~S~hK~L~Gp~---GG~I~~~~~ 329 (358)
.|+.|++.|.. ||.++.+++
T Consensus 141 ~S~TKy~~Gh~d~~~G~v~~~~~ 163 (331)
T d1pffa_ 141 HSATKYINGHTDVVAGLVCSRAD 163 (331)
T ss_dssp EETTTTTSSSSSCCCEEEEECHH
T ss_pred ecchhhcCCCCcccccccccccc
Confidence 99999998854 688888764
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.3e-14 Score=139.14 Aligned_cols=234 Identities=12% Similarity=0.030 Sum_probs=152.0
Q ss_pred hhcccccccChHHHHHHHHHHHHhhhcccccc--cCCCCcHHHHHHHhhhhhccc-CCCCCCCcCCCCcHHHHHHHHHHH
Q 018300 78 FVDYSLGEADPEVCEIITKEKERQFKSLELIA--SENFTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQ 154 (358)
Q Consensus 78 ~~~~~l~~~d~~~~~~i~~e~~~~~~~i~lia--s~n~~s~~V~~al~~~l~~~~-~~G~pg~r~~~G~~~~~~lE~~~~ 154 (358)
+.++||+.+|+..|..+.+.. ...+-|+|-- ++..+|+.|++++...+.+.. ..+|+. -.|.+ ++++.+.
T Consensus 2 ~~~~r~~~~~~~~~~~~~~~~-~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~---~~G~~---~LReaia 74 (418)
T d1w7la_ 2 LQARRLDGIDYNPWVEFVKLA-SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTK---TFGYP---PLTKILA 74 (418)
T ss_dssp CSCGGGTTCCCCTHHHHHHHH-HTSCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCC---TTCCH---HHHHHHH
T ss_pred CcCccccCCCCCHHHHHHHHh-CCCCCEECCCCCCCCCCCHHHHHHHHHHHhCCCcccCCCC---CcCCH---HHHHHHH
Confidence 347899999999987665432 2224455542 345668899999988776432 234543 23444 5666677
Q ss_pred HHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEecee--
Q 018300 155 KRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-- 231 (358)
Q Consensus 155 ~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~-- 231 (358)
+++.+.+|.+.+ ...+|++++|+ +|+..++.++++|||.|+++++.+..+.. .+...|.....+++..
T Consensus 75 ~~~~~~~g~~~~-~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~--------~~~~~g~~~v~~~~~~~~ 145 (418)
T d1w7la_ 75 SFFGELLGQEID-PLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEP--------MTMMAGGRPVFVSLKPGP 145 (418)
T ss_dssp HHHHHHHTCCCC-HHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEECEECC
T ss_pred HHHHHHhCCCCC-cccceeeccCcHHHHHHHHHhhccCCceeeccccccchhHH--------HHHHcCCEeecccccccc
Confidence 788888888742 11246667776 59999999999999999999876655432 2234444322222211
Q ss_pred -------cCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCC--CC---CHHHHHHHHHHcCCEEEEeccccccccccCCcc
Q 018300 232 -------DESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (358)
Q Consensus 232 -------~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~ 299 (358)
..++..+|.+++...... ++++|++..++||+ .. ++++|.++|+++++++++|+++. .+.+.+..+
T Consensus 146 ~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~-~l~~~~~~~ 223 (418)
T d1w7la_ 146 IQNGELGSSSNWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQ-WMVYDGHQH 223 (418)
T ss_dssp ---CCSEEGGGEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCC
T ss_pred ccccccccccCcccchhhhhccccc-cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhH-HhhcCCCCC
Confidence 012235788877776543 56777776666653 33 47889999999999999999964 555544322
Q ss_pred CCC---C-CC--cEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 300 DPF---K-YC--DVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 300 ~pl---~-ga--Div~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
.++ . .. -+++.|++|.+ +|.|-|++++.++
T Consensus 224 ~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~~ 261 (418)
T d1w7la_ 224 ISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDH 261 (418)
T ss_dssp CCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCHH
T ss_pred CCHHHccccccccceecccCccccCCCCcccccccchh
Confidence 222 1 22 37789999985 6778899999874
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=5.5e-14 Score=134.75 Aligned_cols=228 Identities=11% Similarity=0.125 Sum_probs=153.0
Q ss_pred ccccccChHHHHHHHHHHHHhhhccccccc--CCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHH
Q 018300 81 YSLGEADPEVCEIITKEKERQFKSLELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (358)
Q Consensus 81 ~~l~~~d~~~~~~i~~e~~~~~~~i~lias--~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la 158 (358)
++|..+...+|..+.+... ..+.|+|-.+ +..+|+.+++++...+.+. ..||+. ..|.. ++++.+.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~a~-~~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~-~~~Y~~---~~G~~---~LReaia~~~~ 77 (382)
T d1u08a_ 6 SKLPQLGTTIFTQMSALAQ-QHQAINLSQGFPDFDGPRYLQERLAHHVAQG-ANQYAP---MTGVQ---ALREAIAQKTE 77 (382)
T ss_dssp CSCCCCCCCHHHHHHHHHH-HTTCEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCC---TTCCH---HHHHHHHHHHH
T ss_pred hhCCCCCCcHHHHHHHHhc-cCCCEEccCCCCCCCCCHHHHHHHHHHHhcC-CCCCCC---CcCCH---HHHHHHHHHHH
Confidence 4566667778877766543 3355777633 4467889999998877653 345644 23444 57777778888
Q ss_pred HHcCCCCCCCcceEEeCCCHH-HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCC
Q 018300 159 AAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL 237 (358)
Q Consensus 159 ~lfg~~~~~~~v~V~~~SGt~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 237 (358)
+.+|.+.. ...+|++++|+. |+..++.++.++||.|++.++.+..+.. .....|..+. .+..+.+...
T Consensus 78 ~~~g~~~~-~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~~~~--~~~~~~~~~~ 146 (382)
T d1u08a_ 78 RLYGYQPD-ADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAP--------AIALSGGIVK--RMALQPPHFR 146 (382)
T ss_dssp HHHSCCCC-TTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEE--EEECCTTTCC
T ss_pred HHhCCCCC-CCceEEeccchHHHHHHHHhhcccccceEEEecccccchhh--------hhhhccccce--eccccccccc
Confidence 88887642 112366667765 9999999999999999999876654422 2334555333 3345555668
Q ss_pred CCHHHHHHHhhhcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccCCcc-CCCC-----CCc
Q 018300 238 VDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPFK-----YCD 306 (358)
Q Consensus 238 iD~d~le~~i~~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~-~pl~-----gaD 306 (358)
+|++++++.+.+ ++++|++..+++| ...+ +++|.++|+++++.++.|..+..- ...+..+ .+.. .--
T Consensus 147 ~d~~~l~~~~~~-~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~-~~~~~~~~~~~~~~~~~~~~ 224 (382)
T d1u08a_ 147 VDWQEFAALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHI-NFSQQGHASVLAHPQLRERA 224 (382)
T ss_dssp CCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTC-BCCSSCCCCGGGSHHHHTTE
T ss_pred CCHHHHhhhhcc-CccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhc-cccccccccccccccccCcE
Confidence 999999988764 7888887666665 3444 677788899999999999876532 2222111 1111 123
Q ss_pred EEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 307 VVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 307 iv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
++..|++|++ +|.|.|++++.++
T Consensus 225 i~~~s~SK~~~~pG~RiG~~v~~~~ 249 (382)
T d1u08a_ 225 VAVSSFGKTYHMTGWKVGYCVAPAP 249 (382)
T ss_dssp EEEEEHHHHTTCGGGCCEEEECCHH
T ss_pred EEEeeccccccCCcccchhhhccch
Confidence 7788999976 7889999998774
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.52 E-value=5.5e-14 Score=135.65 Aligned_cols=224 Identities=13% Similarity=0.149 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHhh-hccccccc----CC---CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHc
Q 018300 90 VCEIITKEKERQF-KSLELIAS----EN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF 161 (358)
Q Consensus 90 ~~~~i~~e~~~~~-~~i~lias----~n---~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lf 161 (358)
++.++++-+...+ +.|+|--+ ++ ++.+.|++|+.....+..+.+|+. ..|.+ ++.+.+.+++.+..
T Consensus 15 i~~~~~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~---~~G~~---~lr~aia~~~~~~~ 88 (401)
T d7aata_ 15 ILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLP---IAGLA---DFTRASAELALGEN 88 (401)
T ss_dssp HHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCC---TTCCH---HHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCC---CCCCH---HHHHHHHHHHhccC
Confidence 6677766554333 56777643 22 456899999887766555456654 34554 56666666665554
Q ss_pred CCCCCCCcceEEeC--CCH----HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC
Q 018300 162 NLDENKWGVNVQPL--SGS----PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST 235 (358)
Q Consensus 162 g~~~~~~~v~V~~~--SGt----~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 235 (358)
+..... ..+..+ .++ .++..++.++++|||+|++++|.+.+|.. .+...|..+..+++. ++++
T Consensus 89 ~~~~~~--~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~--------~~~~~g~~~~~~~~~-~~~~ 157 (401)
T d7aata_ 89 SEAFKS--GRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTP--------IFRDAGLQLQAYRYY-DPKT 157 (401)
T ss_dssp CHHHHT--TCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHH--------HHHHTTCEEEEEECE-ETTT
T ss_pred CcccCc--CceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhh--------HHHHcCCeEEEEecc-cccc
Confidence 432111 012222 222 25666677889999999999987776543 334667644444432 2234
Q ss_pred CCCCHHHHHHHhhh--cCCeEEEEcCCCCCC--CC---CHHHHHHHHHHcCCEEEEeccccccccccCCccCCC-----C
Q 018300 236 GLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-----K 303 (358)
Q Consensus 236 ~~iD~d~le~~i~~--~~~klIi~~~s~~~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl-----~ 303 (358)
..+|++.+.+.+.. .+++++++..++||+ .. .+++|.++|+++++++++|.++. ++.+.+..+.+. .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~-~l~~~~~~~~~~~~~~~~ 236 (401)
T d7aata_ 158 CSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQ-GFASGDINRDAWALRHFI 236 (401)
T ss_dssp TEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTTTSCHHHHTHHHHHHH
T ss_pred ccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccch-hhhcCCcccchhhhhhhh
Confidence 57899988877643 356788888777764 33 47889999999999999999965 555443211111 1
Q ss_pred --CC-cEEEEcCcCcC--ccCcEEEEEEeCCCC
Q 018300 304 --YC-DVVTTTTHKSL--RGPRGGMIFFKKDPV 331 (358)
Q Consensus 304 --ga-Div~~S~hK~L--~Gp~GG~I~~~~~~~ 331 (358)
.. -+++.|++|.+ .|+|.|++++..+.+
T Consensus 237 ~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~~ 269 (401)
T d7aata_ 237 EQGIDVVLSQSYAKNMGLYGERAGAFTVICRDA 269 (401)
T ss_dssp HTTCCCEEEEECTTTSCCGGGCEEEEEEECSSH
T ss_pred hhhcccceeEeccccceeeccccceeecchHHH
Confidence 11 26667888875 789999999988744
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.52 E-value=2.7e-14 Score=136.76 Aligned_cols=203 Identities=18% Similarity=0.128 Sum_probs=132.0
Q ss_pred ccccccC--CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HHH
Q 018300 105 LELIASE--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PAN 181 (358)
Q Consensus 105 i~lias~--n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A~ 181 (358)
|+|-.++ ..+|+.+++++.+.. ....+|+. ..|.. ++.+.+.+++.+.+|.+.+ + -+|.+++|+ +++
T Consensus 31 i~l~~G~p~~~~p~~~~~al~~~~--~~~~~Y~~---~~G~~---~LR~aia~~~~~~~g~~~~-~-~~I~it~G~~~~l 100 (389)
T d2gb3a1 31 HHLNIGQPDLKTPEVFFERIYENK--PEVVYYSH---SAGIW---ELREAFASYYKRRQRVDVK-P-ENVLVTNGGSEAI 100 (389)
T ss_dssp EECSSCCCCSCCCTHHHHHHHHTC--CSSCCCCC---TTCCH---HHHHHHHHHHHHTSCCCCC-G-GGEEEESHHHHHH
T ss_pred EECCCCCCCCCCCHHHHHHHHhcC--CCCCCCCC---CcCCH---HHHHHHHHHHHHhcCCCcc-c-ceEEecccccccc
Confidence 4554333 346888999987643 23345654 22443 5777777888888887632 2 246666666 599
Q ss_pred HHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC
Q 018300 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (358)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~ 261 (358)
..++.+++++||.|++++|.+..+.. .....|. ..+.++.+++....+.+.+..... .+++++++..++
T Consensus 101 ~~~~~~l~~~gd~V~i~~P~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~ 169 (389)
T d2gb3a1 101 LFSFAVIANPGDEILVLEPFYANYNA--------FAKIAGV--KLIPVTRRMEEGFAIPQNLESFIN-ERTKGIVLSNPC 169 (389)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHHTC--EEEEEECCGGGTSCCCTTGGGGCC-TTEEEEEEESSC
T ss_pred cccccccccCCCeEEEeCCCCccccc--------cccccCc--cccccccccccccchhhhhhhhcc-cCccEEEeCCCC
Confidence 99999999999999999876554321 2234454 334444444444555555555443 367888887677
Q ss_pred CCC--CC---CHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC---CCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 262 YPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 262 ~~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~---gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
||+ .. ++++|.++|+++|+++|.|.++. .+...+..++... .-.+++.|++|.+ +|.|-|++++.++
T Consensus 170 NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~-~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~ 246 (389)
T d2gb3a1 170 NPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYS-EIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNE 246 (389)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCH
T ss_pred ccccccchHHHHHHHHhhcccCCEEEEEecccc-ccccccccccccccccccccccccccccccCcccceeeeeccch
Confidence 654 33 47889999999999999999875 4554443332222 3347778888886 6778899998775
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.50 E-value=9.3e-15 Score=143.72 Aligned_cols=184 Identities=19% Similarity=0.178 Sum_probs=120.2
Q ss_pred CCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhccCCCEEEecCCCCCcccccccccchh
Q 018300 136 GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKR 215 (358)
Q Consensus 136 g~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~ 215 (358)
|.++|+|++.++++|+. ++++||.+. .++++|||.||..++.+++++||+++..+..+..+-.|+..+ ..
T Consensus 67 gd~~y~~~~~~~~le~~----~a~l~g~~~-----~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~-~~ 136 (465)
T d1ax4a_ 67 GDEAYAGSRNYYDLKDK----AKELFNYDY-----IIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTT-AA 136 (465)
T ss_dssp CCCCSSSCHHHHHHHHH----HHHHHCCCE-----EEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHH-HH
T ss_pred hhhhhccChHHHHHHHH----HHHHHCCCE-----EEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhh-HH
Confidence 44568888888888764 788999986 377899999999999999888876554433221111121100 00
Q ss_pred ccccCCceEEEE-------eceecCCCCCCCHHHHHHHhhhcC---CeEEEEcCCCC---CCCC---CHHHHHHHHHHcC
Q 018300 216 RVSGTSIYFESM-------PYRLDESTGLVDYDMLEKTAILFR---PKLIIAGASAY---PRDF---DYPRMRQIADAVG 279 (358)
Q Consensus 216 ~~~~~g~~~~~~-------~~~~~~~~~~iD~d~le~~i~~~~---~klIi~~~s~~---~~~~---dl~~I~~ia~e~g 279 (358)
.+...|...... +...++.++.+|++++++++++.. +.++++..+++ +... ++++|.++|++||
T Consensus 137 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g 216 (465)
T d1ax4a_ 137 HVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 216 (465)
T ss_dssp HHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcC
Confidence 122333321111 112344567899999999987543 34555544332 2333 4788889999999
Q ss_pred CEEEEeccccccccccCC------c--------cCCCCCCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 280 ALLMMDMAHISGLVAASV------V--------ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 280 ~~livD~Ah~~Gl~~~g~------~--------~~pl~gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
++|++|++|..|....+. . +.....+|++++|.||.+++|.||+++++++
T Consensus 217 ~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~ 280 (465)
T d1ax4a_ 217 IFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDN 280 (465)
T ss_dssp CCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSC
T ss_pred CEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccccceeEeecch
Confidence 999999999876543110 0 0011247999999999999999999999876
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.47 E-value=3.2e-13 Score=129.77 Aligned_cols=233 Identities=16% Similarity=0.097 Sum_probs=135.4
Q ss_pred CcchhcccccccChHHHHHHHHHHHHhhhccccc---cc-CCCCcHHHHHHHhhhhhccc--CCCCCCCcCCCCcHHHHH
Q 018300 75 GSSFVDYSLGEADPEVCEIITKEKERQFKSLELI---AS-ENFTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDE 148 (358)
Q Consensus 75 ~~~~~~~~l~~~d~~~~~~i~~e~~~~~~~i~li---as-~n~~s~~V~~al~~~l~~~~--~~G~pg~r~~~G~~~~~~ 148 (358)
++.+++++.++..+.....+.+ .....+-|+|- |+ +.++.+.+.+++...+.... ..+|+. ..|.+ +
T Consensus 3 ~~~~~~~~~~~~~~s~ire~~~-~~~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~ 75 (403)
T d1wsta1 3 FDSFFSEKAMLMKASEVRELLK-LVETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGT---TKGFT---P 75 (403)
T ss_dssp GGGGCCHHHHHCCCHHHHHHHH-HHTSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCC---SSCCH---H
T ss_pred HHHHHHHHHhcCCCcHHHHHHH-HhCCCCcEECCCCCCCccccCHHHHHHHHHHHHHhCcccccCCCC---CcCCH---H
Confidence 4556677777766543322211 11123444553 22 23344566666666543321 122433 22443 5
Q ss_pred HHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEE
Q 018300 149 LETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM 227 (358)
Q Consensus 149 lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~ 227 (358)
+++.+.+++.+.+|.+-+. .+|++++|+ +++..++.++++|||+|++.+|.|..+.. .+...|..+ +
T Consensus 76 lR~aia~~l~~~~g~~~~~--~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~--------~~~~~g~~~--~ 143 (403)
T d1wsta1 76 LRLALARWMEKRYDIPMSK--VEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQ--------AFKYYDPEF--I 143 (403)
T ss_dssp HHHHHHHHHHHHHCCCCTT--CEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTCCEE--E
T ss_pred HHHHHHHHHHHHhCCCCCh--HHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhH--------HHhhccccc--e
Confidence 7777778888888865321 256667766 59999999999999999999886655432 234456543 4
Q ss_pred eceecCCCCCCCHHHH----HHHhhhc--CCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccccccccC
Q 018300 228 PYRLDESTGLVDYDML----EKTAILF--RPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAAS 296 (358)
Q Consensus 228 ~~~~~~~~~~iD~d~l----e~~i~~~--~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g 296 (358)
.++.+++. .|...+ ++..... ...++++..+++| ...+ +++|.++|++||++|++|++|. .+.+.+
T Consensus 144 ~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~-~l~~~~ 220 (403)
T d1wsta1 144 SIPLDDKG--MRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYS-ELRYSG 220 (403)
T ss_dssp EEEEETTE--ECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCSS
T ss_pred eEeecccC--CccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchh-heecCC
Confidence 44454322 222222 2222211 2234444555554 3444 6788899999999999999975 555444
Q ss_pred CccCCCC-----CCcEEEEcCcCcC-ccCcEEEEEEeCC
Q 018300 297 VVADPFK-----YCDVVTTTTHKSL-RGPRGGMIFFKKD 329 (358)
Q Consensus 297 ~~~~pl~-----gaDiv~~S~hK~L-~Gp~GG~I~~~~~ 329 (358)
....++. +-.+++.|++|++ +|.|.|+++++++
T Consensus 221 ~~~~~~~~~~~~~~~i~~~S~SK~~~~G~RiG~~i~~~~ 259 (403)
T d1wsta1 221 EPTPPIKHFDDYGRVIYLGTFSKILAPGFRIGWVAAHPH 259 (403)
T ss_dssp CCCCCGGGGCSSSCEEEEEESTTTTCGGGCCEEEEECHH
T ss_pred CCCCcccccCCCCcEEEEccccceecCcccccccccchH
Confidence 3222322 3448889999997 4678899999874
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.47 E-value=2.1e-13 Score=132.91 Aligned_cols=170 Identities=16% Similarity=0.126 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHcCCCC-CCCcceEEeCCCH-HHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccc-cCCceE
Q 018300 148 ELETLCQKRALAAFNLDE-NKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTSIYF 224 (358)
Q Consensus 148 ~lE~~~~~~la~lfg~~~-~~~~v~V~~~SGt-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~-~~g~~~ 224 (358)
++++.+.+++.+.+|..- -++ -+|++++|+ +|+..++.++++|||+|++++|.|.++.. .+. ..|.
T Consensus 88 ~LR~aiA~~l~~~~~~~~~~~p-e~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~--------~~~~~~g~-- 156 (431)
T d1m7ya_ 88 AFKKAMVDFMAEIRGNKVTFDP-NHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDR--------DLKWRTGV-- 156 (431)
T ss_dssp HHHHHHHHHHHHHTTTSSCCCG-GGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HTTTTTCC--
T ss_pred HHHHHHHHHHHHHhCCCCCCCc-ceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHhcCc--
Confidence 577777778888877321 011 246666665 69999999999999999999887765432 122 2344
Q ss_pred EEEeceecCCCC-CCCHHHHHHHhhh-----cCCeEEEEcCCCCCC--CC---CHHHHHHHHHHcCCEEEEecccccccc
Q 018300 225 ESMPYRLDESTG-LVDYDMLEKTAIL-----FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLV 293 (358)
Q Consensus 225 ~~~~~~~~~~~~-~iD~d~le~~i~~-----~~~klIi~~~s~~~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~ 293 (358)
+.++++++++++ .+|.+++++.+.+ .+++++++..+++|+ .. ++++|.++|+++|++||+|++|. .+.
T Consensus 157 ~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~-~~~ 235 (431)
T d1m7ya_ 157 EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYS-GTA 235 (431)
T ss_dssp EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG-GGC
T ss_pred eeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeeccccc-ccc
Confidence 556666665543 7899998877643 245677776666553 33 37888999999999999999976 344
Q ss_pred ccCC-ccCCC--------C-C---C--cEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 294 AASV-VADPF--------K-Y---C--DVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 294 ~~g~-~~~pl--------~-g---a--Div~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
+.+. +.+.+ . . . -+++.|++|.+ +|.|.|+++++++
T Consensus 236 ~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~ 288 (431)
T d1m7ya_ 236 FSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDD 288 (431)
T ss_dssp CSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCH
T ss_pred cCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchh
Confidence 3321 11110 0 0 1 17788999996 6789999999875
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.46 E-value=3.1e-13 Score=131.55 Aligned_cols=175 Identities=14% Similarity=0.105 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHcCC----CCCCCcceEEeCCC-HHHHHHHHHHhccCCCEEEecCCCCCcccccccccchhccc-cCC
Q 018300 148 ELETLCQKRALAAFNL----DENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTS 221 (358)
Q Consensus 148 ~lE~~~~~~la~lfg~----~~~~~~v~V~~~SG-t~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~-~~g 221 (358)
++++.+.+++.+.+|. +++ +|.+++| ++|+..++.++++|||+|++++|.|.++.. .+. ..|
T Consensus 87 ~LR~aiA~~l~~~~~~~~~~~~e----~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~--------~~~~~~g 154 (428)
T d1iaya_ 87 EFRKAIAKFMEKTRGGRVRFDPE----RVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNR--------DLRWRTG 154 (428)
T ss_dssp HHHHHHHHHHHHHTTTCSCCCTT----SCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH--------HTTTTTC
T ss_pred HHHHHHHHHHHHHhCCCCCCChh----hEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHH--------HHHHhcC
Confidence 5777777788888774 332 3445555 569999999999999999999987766532 122 235
Q ss_pred ceEEEEeceecCCC-CCCCHHHHHHHhh-----hcCCeEEEEcCCCCC--CCCC---HHHHHHHHHHcCCEEEEeccccc
Q 018300 222 IYFESMPYRLDEST-GLVDYDMLEKTAI-----LFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHIS 290 (358)
Q Consensus 222 ~~~~~~~~~~~~~~-~~iD~d~le~~i~-----~~~~klIi~~~s~~~--~~~d---l~~I~~ia~e~g~~livD~Ah~~ 290 (358)
. ++++++.++++ ..+|.++++..++ ..++++|++..+++| ...+ +++|.++|+++|++||+|++|.
T Consensus 155 ~--~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~- 231 (428)
T d1iaya_ 155 V--QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYA- 231 (428)
T ss_dssp C--EEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTG-
T ss_pred C--eEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEeccccc-
Confidence 4 55565565443 4789988865432 124567777656654 3444 7889999999999999999976
Q ss_pred cccccCCccCCC-----------CC--CcEEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhh
Q 018300 291 GLVAASVVADPF-----------KY--CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (358)
Q Consensus 291 Gl~~~g~~~~pl-----------~g--aDiv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~ 342 (358)
.+.+.+..+.++ .. --+++.|++|.+ +|.|.|++++.++ ++.+.++.
T Consensus 232 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~-----~l~~~~~~ 293 (428)
T d1iaya_ 232 ATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFND-----DVVNCARK 293 (428)
T ss_dssp GGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCH-----HHHHHHHH
T ss_pred ccccCcccccccccccchhhccccccceEEEEecCCCcccCCCccccccccccc-----chhhhhhh
Confidence 444433211111 11 126788999986 6889999998765 55555544
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.43 E-value=2.5e-12 Score=127.34 Aligned_cols=176 Identities=18% Similarity=0.114 Sum_probs=119.6
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCC------CcceEEeCCCHHHHHHHHHHhc----c------CC--------C-EEEe
Q 018300 143 NEYIDELETLCQKRALAAFNLDENK------WGVNVQPLSGSPANFEVYTAIL----K------PH--------D-RIMG 197 (358)
Q Consensus 143 ~~~~~~lE~~~~~~la~lfg~~~~~------~~v~V~~~SGt~A~~~a~~all----~------pG--------D-~Vl~ 197 (358)
.+...++|..+.+|++++||.+... .+--+++++||.||..++.+.- + +| + .|++
T Consensus 108 sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~ 187 (476)
T d1js3a_ 108 SPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYA 187 (476)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEE
T ss_pred hhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEe
Confidence 4556789999999999999996421 1123566778889998875431 0 11 1 3455
Q ss_pred cCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcC-----CeEEEE--cCCCCCCCCCHHH
Q 018300 198 LDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIA--GASAYPRDFDYPR 270 (358)
Q Consensus 198 ~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~-----~klIi~--~~s~~~~~~dl~~ 270 (358)
++. +|++. .+.+...|..+..+ +++ +++.+|+++|++.+++.+ |-+|+. +.+.+|..-|+++
T Consensus 188 s~~---~H~Si-----~ka~~~lGl~~~~v--~~d-~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~ 256 (476)
T d1js3a_ 188 SDQ---AHSSV-----ERAGLIGGVKLKAI--PSD-GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLE 256 (476)
T ss_dssp ETT---CCHHH-----HHHHHHHTCEEEEE--CCC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHH
T ss_pred ccc---ccHHH-----HHHHHhcCceEEEe--ccC-CCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHH
Confidence 543 45442 13455667655444 466 468999999999986532 334444 3445678889999
Q ss_pred HHHHHHHcCCEEEEeccccccccccCCccCC---CCCCcEEEEcCcCcCccCcE-EEEEEeCC
Q 018300 271 MRQIADAVGALLMMDMAHISGLVAASVVADP---FKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (358)
Q Consensus 271 I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~p---l~gaDiv~~S~hK~L~Gp~G-G~I~~~~~ 329 (358)
|.++|+++|+++++|+|+...+......... ++++|.++.++||++..|-+ |++++++.
T Consensus 257 I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~ 319 (476)
T d1js3a_ 257 VGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRR 319 (476)
T ss_dssp HHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCH
T ss_pred HHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccch
Confidence 9999999999999999987444333222222 23789999999999999876 77777764
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.42 E-value=7.4e-13 Score=128.02 Aligned_cols=233 Identities=14% Similarity=0.107 Sum_probs=138.0
Q ss_pred cccccCh-HHHHHHHHHHHHhh-hccccccc----C---CCCcHHHHHHHhhhhhccc-CCCCCCCcCCCCcHHHHHHHH
Q 018300 82 SLGEADP-EVCEIITKEKERQF-KSLELIAS----E---NFTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELET 151 (358)
Q Consensus 82 ~l~~~d~-~~~~~i~~e~~~~~-~~i~lias----~---n~~s~~V~~al~~~l~~~~-~~G~pg~r~~~G~~~~~~lE~ 151 (358)
++...+| .++.++++-+.... +.|+|--+ + .++.|.|++|+.....+.. ..+|+. ..|.+ ++.+
T Consensus 8 ~~~~~~~~~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p---~~G~p---~lre 81 (412)
T d1ajsa_ 8 EVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLP---ILGLA---EFRT 81 (412)
T ss_dssp TCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCC---TTCCH---HHHH
T ss_pred hCCcCCCChHHHHHHHHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCC---CCCCH---HHHH
Confidence 3656555 47777766543322 55776544 1 2456889998765443332 334544 23554 5666
Q ss_pred HHHHHHHHHcCCC--CCCCcceEEeCCCHHHHHHHH-------HHhccCCCEEEecCCCCCcccccccccchhccccCCc
Q 018300 152 LCQKRALAAFNLD--ENKWGVNVQPLSGSPANFEVY-------TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (358)
Q Consensus 152 ~~~~~la~lfg~~--~~~~~v~V~~~SGt~A~~~a~-------~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (358)
.+++++.+..+.+ .+.+ +.++..+++.++..+. .++++|||+|++++|.+.+|.. .+...|.
T Consensus 82 aia~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~--------~~~~~G~ 152 (412)
T d1ajsa_ 82 CASRLALGDDSPALQEKRV-GGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNG--------VFTTAGF 152 (412)
T ss_dssp HHHHHHHCTTCHHHHTTCE-EEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHH--------HHHHTTC
T ss_pred HHHHHHhccCCcccccccc-eeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHH--------HHHHcCC
Confidence 6655554443321 2111 2334444444444333 3347999999999987766532 3345564
Q ss_pred e-EEEEeceecCCCCCCCHHHHHHHhhh--cCCeEEEEcCCCCCC--CCC---HHHHHHHHHHcCCEEEEeccccccccc
Q 018300 223 Y-FESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVA 294 (358)
Q Consensus 223 ~-~~~~~~~~~~~~~~iD~d~le~~i~~--~~~klIi~~~s~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~ 294 (358)
. +.+.++ .+++...+|++.+++.+.. .+++++++..++||+ ..+ +++|+++|++||+++++|++|. ++.+
T Consensus 153 ~~v~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~-~l~~ 230 (412)
T d1ajsa_ 153 KDIRSYRY-WDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQ-GFAS 230 (412)
T ss_dssp SCEEEEEC-EETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT-TTTT
T ss_pred eEEEeecc-cccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhh-hhhc
Confidence 3 233332 2334457898887766543 256777777777654 444 7889999999999999999975 5554
Q ss_pred cCCccCCC------C--CCcEEEEcCcCcC--ccCcEEEEEEeCCCC
Q 018300 295 ASVVADPF------K--YCDVVTTTTHKSL--RGPRGGMIFFKKDPV 331 (358)
Q Consensus 295 ~g~~~~pl------~--gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~ 331 (358)
.+.....+ + ...+++.|+.|++ .|+|-|++++....+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~ 277 (412)
T d1ajsa_ 231 GNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEP 277 (412)
T ss_dssp SCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSH
T ss_pred CCcccchhhhhhhhhhcccccccccccccccCCCCCccccccchhHH
Confidence 43211111 1 2346777888875 788999999987643
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=7.2e-13 Score=127.33 Aligned_cols=234 Identities=16% Similarity=0.115 Sum_probs=133.7
Q ss_pred cccccCh-HHHHHHHHHHHHhh-hccccccc----C---CCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHH
Q 018300 82 SLGEADP-EVCEIITKEKERQF-KSLELIAS----E---NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETL 152 (358)
Q Consensus 82 ~l~~~d~-~~~~~i~~e~~~~~-~~i~lias----~---n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~ 152 (358)
++...+| .++.++++-+...+ +.|+|--+ + .++.+.|++|+.....+....+|+. ..|.+ ++++.
T Consensus 4 ~~~~~p~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p---~~G~~---~lR~a 77 (396)
T d2q7wa1 4 NITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLG---IDGIP---EFGRC 77 (396)
T ss_dssp TCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCC---TTCCH---HHHHH
T ss_pred ccccCCCChHHHHHHHHhccCCCCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCC---CcCCH---HHHHH
Confidence 3445555 35666654443333 56777643 1 2457899999887766655556654 33544 56666
Q ss_pred HHHHHHHHcCCCCC-CCcceEEeCCCHHH--HHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEec
Q 018300 153 CQKRALAAFNLDEN-KWGVNVQPLSGSPA--NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY 229 (358)
Q Consensus 153 ~~~~la~lfg~~~~-~~~v~V~~~SGt~A--~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~ 229 (358)
+.+++.+..+.... +....+...+|+.+ +...+...+.+||+|+++++.+.+|.. .+...|.....+++
T Consensus 78 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~--------~~~~~g~~~~~~~~ 149 (396)
T d2q7wa1 78 TQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKS--------VFNSAGLEVREYAY 149 (396)
T ss_dssp HHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHH--------HHHHTTCEEEEEEC
T ss_pred HHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchH--------HHHHcCCeeEeccc
Confidence 66666555443211 11012233344433 334445558999999999987666533 23456764444444
Q ss_pred eecCCCCCCCHHHHHHHhhhc--CCeEEEEcCCCCCC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCCccC-C
Q 018300 230 RLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD-P 301 (358)
Q Consensus 230 ~~~~~~~~iD~d~le~~i~~~--~~klIi~~~s~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~-p 301 (358)
..+ ++...+.+++++..... +++++++..++||+ ..+ +++|.++|+++++++++|++|. ++.+++..+. .
T Consensus 150 ~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~-~l~~~~~~~~~~ 227 (396)
T d2q7wa1 150 YDA-ENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQ-GFARGLEEDAEG 227 (396)
T ss_dssp EET-TTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT-TSSSCHHHHTHH
T ss_pred ccc-cccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEecccc-ccccCCccCchH
Confidence 332 34456777776654332 45677777677664 443 7789999999999999999975 6655432111 1
Q ss_pred C---C---CCcEEEEcCcCcC--ccCcEEEEEEeCCCC
Q 018300 302 F---K---YCDVVTTTTHKSL--RGPRGGMIFFKKDPV 331 (358)
Q Consensus 302 l---~---gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~ 331 (358)
+ . .-.+++.|+.|++ .|.|.|++++....+
T Consensus 228 ~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~ 265 (396)
T d2q7wa1 228 LRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADS 265 (396)
T ss_dssp HHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSH
T ss_pred hhhhhhhcccccccccccccccccCCCccccccchhHH
Confidence 1 1 2236777888885 788999999987643
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.40 E-value=1.1e-12 Score=120.24 Aligned_cols=195 Identities=22% Similarity=0.182 Sum_probs=124.3
Q ss_pred ccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHH
Q 018300 109 ASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT 186 (358)
Q Consensus 109 as~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~ 186 (358)
.+++ .++|+|++||.+. ..|...|+..+.+.++|+ +++++||.+. .++++|||.||.+++.
T Consensus 5 ~~~~~t~p~p~v~~A~~~a--------~~g~~~yg~~p~~~~le~----~lA~~~G~~~-----~~~~~sGt~A~~~al~ 67 (343)
T d1m6sa_ 5 RSDTVTKPTEEMRKAMAQA--------EVGDDVYGEDPTINELER----LAAETFGKEA-----ALFVPSGTMGNQVSIM 67 (343)
T ss_dssp SCGGGCCCCHHHHHHHHTC--------CCCCGGGTCCHHHHHHHH----HHHHHTTCSE-----EEEESCHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHhh--------hcCCcccCCCHHHHHHHH----HHHHHHCCCe-----EEEeCCHHHHHHHHHH
Confidence 3455 3689999998643 122234566677777765 4789999875 3677899999999999
Q ss_pred HhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcC-----CeEEEEc-CC
Q 018300 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAG-AS 260 (358)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~-----~klIi~~-~s 260 (358)
++.++||.+++....+.++..... .....+. ....+ +.+.+..|++.+++.+...+ +..+++. ..
T Consensus 68 a~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 138 (343)
T d1m6sa_ 68 AHTQRGDEVILEADSHIFWYEVGA-----MAVLSGV--MPHPV--PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTH 138 (343)
T ss_dssp HHCCTTCEEEEETTCHHHHSSTTH-----HHHHTCC--EEEEE--CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSB
T ss_pred HHhccCCceeccccccceeeeccc-----ccccccc--eeecc--ccccCccCHHHHHHhhhhhhccccccccccccccc
Confidence 999999999988765433221110 1112222 22332 22356789999988875422 2333332 22
Q ss_pred CC--CCCC---CHHHHHHHHHHcCCEEEEeccccccccccCCccC--CCCCCcEEEEcCcCcCccCcEEEEEEeCC
Q 018300 261 AY--PRDF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFKYCDVVTTTTHKSLRGPRGGMIFFKKD 329 (358)
Q Consensus 261 ~~--~~~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~--pl~gaDiv~~S~hK~L~Gp~GG~I~~~~~ 329 (358)
+. +... ++++|+++|+++|+++++|++|..+......... .....+..+++.+|...|..+|.+....+
T Consensus 139 ~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 214 (343)
T d1m6sa_ 139 NRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRD 214 (343)
T ss_dssp TTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHH
T ss_pred ccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccHH
Confidence 22 2333 4667888889999999999998865433211110 01145677788888888888888877764
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.40 E-value=9.3e-13 Score=127.40 Aligned_cols=196 Identities=17% Similarity=0.097 Sum_probs=123.1
Q ss_pred CcHHHHHHHhhhhhccc--CCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhcc
Q 018300 114 TSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILK 190 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~--~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~ 190 (358)
+.+.+.+++...+.... ..+|+. ..|.+ ++++.+.+++.+.+|.+..+. -+|.+++|+ +|+..++.++++
T Consensus 54 P~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~LR~aia~~~~~~~g~~~~~~-~~I~it~G~~~al~~~~~~~~~ 126 (420)
T d1vp4a_ 54 PRKELAEIAKEIIEKEYHYTLQYST---TEGDP---VLKQQILKLLERMYGITGLDE-DNLIFTVGSQQALDLIGKLFLD 126 (420)
T ss_dssp CHHHHHHHHHHHHHHSHHHHTSCCC---TTCCH---HHHHHHHHHHHHHHCCCSCCG-GGEEEEEHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCCccccCCCC---CcCCH---HHHHHHHHHHHHHhCCCCCCH-HHeEeccchhhhHHHHHHhhhc
Confidence 44555555555443321 123443 23444 577777788888888753112 256677765 599999999999
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhh-------cCCe-EEEEcCCCC
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-------FRPK-LIIAGASAY 262 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~-------~~~k-lIi~~~s~~ 262 (358)
|||+|+++++.|..+.. .....|.. +..++.++ ..+|++.++..+.. .+++ ++++..++|
T Consensus 127 ~Gd~Vlv~~P~y~~~~~--------~~~~~g~~--~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~N 194 (420)
T d1vp4a_ 127 DESYCVLDDPAYLGAIN--------AFRQYLAN--FVVVPLED--DGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHN 194 (420)
T ss_dssp TTCEEEEEESCCHHHHH--------HHHTTTCE--EEEEEEET--TEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCT
T ss_pred cccccccccccccchhH--------HHHHHhhh--cccccccc--cccccchhhhhhhhhHHHhhccccceeeEecCCCC
Confidence 99999999886655422 23455654 44444553 35677776554321 1233 445555566
Q ss_pred CC--CC---CHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-----CCcEEEEcCcCcC-ccCcEEEEEEeCC
Q 018300 263 PR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL-RGPRGGMIFFKKD 329 (358)
Q Consensus 263 ~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-----gaDiv~~S~hK~L-~Gp~GG~I~~~~~ 329 (358)
|+ .. ++++|.++|+++++++++|.++. .+.+.+....+.. +.-++..|++|++ +|.|.|+++++++
T Consensus 195 PtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~-~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~~G~RiG~~~~~~~ 271 (420)
T d1vp4a_ 195 PAGVTTSLEKRKALVEIAEKYDLFIVEDDPYG-ALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSKE 271 (420)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECSST-TCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCHH
T ss_pred ccchhhhhhhhhhhhhhhhcccccccccchhh-hccccCcccccccccccccceeEEeccccccccccccccccccch
Confidence 54 33 47889999999999999999865 5554443222221 3346777888885 7889999998774
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.39 E-value=5.2e-14 Score=133.29 Aligned_cols=204 Identities=12% Similarity=0.053 Sum_probs=130.0
Q ss_pred cccccccCCCCcHHHHHHHhhhhhcccCCCCCCC-cCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCC--HHH
Q 018300 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG--SPA 180 (358)
Q Consensus 104 ~i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~-r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SG--t~A 180 (358)
..|+.|++..+|++|+++|...+.+.+..|.... -.+.+.++.+.+++ +++.++++|+++.+ + .|++++| +.+
T Consensus 4 ~~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~-~r~~l~~l~~~~~~-~--~i~~~~gs~t~~ 79 (361)
T d2c0ra1 4 AYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNE-AQARLLALLGNPTG-Y--KVLFIQGGASTQ 79 (361)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHH-HHHHHHHHTTCCSS-E--EEEEESSHHHHH
T ss_pred CcccCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHH-HHHHHHHHhCCCCC-C--EEEEECCCchHH
Confidence 3467899999999999999988766432222110 01224566666665 89999999999764 2 3444333 346
Q ss_pred HHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCC
Q 018300 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (358)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s 260 (358)
+.++...++.+||++++..- +++.+.+. ......+..++....+ ....+|.+++++.+... +.+.+. .
T Consensus 80 ~ea~~~~l~~~~~~~l~~~~---g~~~~~~~---~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~v~-~ 147 (361)
T d2c0ra1 80 FAMIPMNFLKEGQTANYVMT---GSWASKAL---KEAKLIGDTHVAASSE---ASNYMTLPKLQEIQLQD--NAAYLH-L 147 (361)
T ss_dssp HHHHHHHHCCTTCEEEEEEC---SHHHHHHH---HHHHHHSCEEEEEECG---GGTTCSCCCGGGCCCCT--TEEEEE-E
T ss_pred HHHHHhccccCCCceEEEee---chhhhhhh---hhhhhcCceeeeeccc---cccccchhhhhhhcccC--cceEEE-E
Confidence 67777778999999987652 33333221 1223445544444433 23467777777665432 233322 1
Q ss_pred CCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCCCCcEEEEcCcCcCccCcEEEEEEeC
Q 018300 261 AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKK 328 (358)
Q Consensus 261 ~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~gaDiv~~S~hK~L~Gp~GG~I~~~~ 328 (358)
..+...++++|.++|+++|+++++|+++++|.. |.+++.+|+.++++||.+..|.|++++...
T Consensus 148 ~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~-----~id~~~~di~~~s~~k~~~~~~~~~~~~~~ 210 (361)
T d2c0ra1 148 TSNETIEGAQFKAFPDTGSVPLIGDMSSDILSR-----PFDLNQFGLVYAGAQKNLGPSGVTVVIVRE 210 (361)
T ss_dssp ESEETTTTEECSSCCCCTTSCEEEECTTTTTSS-----CCCGGGCSEEEEETTTTTCCSSCEEEEEEG
T ss_pred ecccceecceEEEeeccCCceEEEEeecccccc-----ccccccceeEEEecccccccccCcEEEEEh
Confidence 234456777888999999999999999987753 333447888888999998766665554443
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.37 E-value=2e-12 Score=123.81 Aligned_cols=232 Identities=16% Similarity=0.191 Sum_probs=141.2
Q ss_pred cccccChH-HHHHHHHHHHHhh-hccccccc-------CCCCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHH
Q 018300 82 SLGEADPE-VCEIITKEKERQF-KSLELIAS-------ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETL 152 (358)
Q Consensus 82 ~l~~~d~~-~~~~i~~e~~~~~-~~i~lias-------~n~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~ 152 (358)
.|+..+|+ +++++.+-+..-+ +.|+|--+ ..++.|.|++|+...+.+....+|.. ..|.+ ++.+.
T Consensus 4 ~~~~~~~d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p---~~G~~---~lr~a 77 (394)
T d2ay1a_ 4 NLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAG---LSGEP---EFQKA 77 (394)
T ss_dssp GCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCC---SSCCH---HHHHH
T ss_pred CCCCCCCChHHHHHHHHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCC---CCCCH---HHHHH
Confidence 45555544 7777766544322 55777543 23557899999987776655556654 23554 56666
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCHHH--HHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEece
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGSPA--NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt~A--~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~ 230 (358)
+.+++....+.... . ..+++++|+.+ +.+.+..+.+|||+|+++++.+..|.. .+...|..+..+++.
T Consensus 78 ia~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~--------~~~~~g~~~v~~~~~ 147 (394)
T d2ay1a_ 78 MGELILGDGLKSET-T-ATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVS--------IMNFMGLPVQTYRYF 147 (394)
T ss_dssp HHHHHHGGGCCGGG-E-EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH--------HHHHHTCCEEEEECE
T ss_pred HHHHHhcccccccc-c-cceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHH--------HHHHcCCEEEEeccc
Confidence 66666544444321 1 24555566544 455556678999999999986655432 234556544444433
Q ss_pred ecCCCCCCCHHHHHHHhhhc--CCeEEEEcCCCCCC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCC-
Q 018300 231 LDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF- 302 (358)
Q Consensus 231 ~~~~~~~iD~d~le~~i~~~--~~klIi~~~s~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl- 302 (358)
- +++...+.+++++..... +++++++..++||+ ..+ +++|+++|+++++++++|.++. ++.+.+....++
T Consensus 148 ~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~-~l~~~~~~~~~~~ 225 (394)
T d2ay1a_ 148 D-AETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQ-GFGDGLEEDAAGT 225 (394)
T ss_dssp E-TTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCT-TSSSCHHHHHHHH
T ss_pred c-hhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccch-hhcccccccchhh
Confidence 2 234466777766655432 34566666666654 443 7889999999999999999965 665443211111
Q ss_pred -----CCC-cEEEEcCcCcC--ccCcEEEEEEeCCCC
Q 018300 303 -----KYC-DVVTTTTHKSL--RGPRGGMIFFKKDPV 331 (358)
Q Consensus 303 -----~ga-Div~~S~hK~L--~Gp~GG~I~~~~~~~ 331 (358)
+.. -+++.|+.|++ .|+|.|++......+
T Consensus 226 ~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~ 262 (394)
T d2ay1a_ 226 RLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADA 262 (394)
T ss_dssp HHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSH
T ss_pred hhhhhhcccccccccccccccCCcccccchhhchhHH
Confidence 122 25566777875 688999999987643
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.34 E-value=8.2e-12 Score=114.08 Aligned_cols=195 Identities=14% Similarity=0.079 Sum_probs=119.4
Q ss_pred ccCCCC--cHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHH
Q 018300 109 ASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT 186 (358)
Q Consensus 109 as~n~~--s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~ 186 (358)
+|+|++ +|+|++|+....... ..+ |+..+ +.++++++++++||.+.+ .++++|||.||..++.
T Consensus 8 ~s~n~~g~~P~v~~A~~~a~~~~----~~~---~~~~~----~~~~l~~~la~~~g~~~~----v~f~~sGt~An~~a~~ 72 (345)
T d1v72a1 8 SSDNIAGASPEVAQALVKHSSGQ----AGP---YGTDE----LTAQVKRKFCEIFERDVE----VFLVPTGTAANALCLS 72 (345)
T ss_dssp SCGGGCCCCHHHHHHHHHTTSSC----CCS---TTCSH----HHHHHHHHHHHHHTSCCE----EEEESCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHhccC----ccc---cCCCH----HHHHHHHHHHHHHCCCcE----EEECCchHHHHHHHHH
Confidence 678874 999999997643211 111 23334 334467789999998763 4566899999999999
Q ss_pred HhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc-----CCeE--EEEcC
Q 018300 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKL--IIAGA 259 (358)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~-----~~kl--Ii~~~ 259 (358)
+++++++.+++....|..+..... .....+..+.... ....+.+|++.+++.+... .+.. +....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 144 (345)
T d1v72a1 73 AMTPPWGNIYCHPASHINNDECGA-----PEFFSNGAKLMTV---DGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQ 144 (345)
T ss_dssp TSCCTTEEEEECTTSHHHHSSTTH-----HHHHTTSCEEEEC---CCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEES
T ss_pred HHHhcCCccccccccceeeechhh-----HHHhcCccccccc---ccccccccHHHhhhhhcccccccccccceeeeeec
Confidence 999999998887765444322211 1123343333322 1234578999999887542 2332 22222
Q ss_pred CC-CCC---CCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCC-C---CCcEEEEcCcCcCccCcEEEEEE
Q 018300 260 SA-YPR---DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K---YCDVVTTTTHKSLRGPRGGMIFF 326 (358)
Q Consensus 260 s~-~~~---~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl-~---gaDiv~~S~hK~L~Gp~GG~I~~ 326 (358)
.+ .+. ..+++++.++|+++|+++++|++|..+........... . ..+..+.+.+|...+..++.+..
T Consensus 145 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (345)
T d1v72a1 145 ATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLF 219 (345)
T ss_dssp SCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEES
T ss_pred cccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccccccccccc
Confidence 22 222 34578888899999999999999986554332211111 1 45677777777654444444443
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.34 E-value=7.9e-12 Score=120.90 Aligned_cols=243 Identities=15% Similarity=0.169 Sum_probs=140.9
Q ss_pred ccccccCh-HHHHHHHHHHHHhh-hccccccc----CC---CCcHHHHHHHhhhhhc-ccCCCCCCCcCCCCcHHHHHHH
Q 018300 81 YSLGEADP-EVCEIITKEKERQF-KSLELIAS----EN---FTSRAVMEAVGSCLTN-KYSEGLPGKRYYGGNEYIDELE 150 (358)
Q Consensus 81 ~~l~~~d~-~~~~~i~~e~~~~~-~~i~lias----~n---~~s~~V~~al~~~l~~-~~~~G~pg~r~~~G~~~~~~lE 150 (358)
.++...+| .++.+.++-++..+ +.|+|--+ ++ ++.+.|++|......+ ....+|+. ..|.+ ++.
T Consensus 6 ~~~~~~~~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p---~~G~~---~lr 79 (412)
T d1yaaa_ 6 NNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLG---ITGLP---SLT 79 (412)
T ss_dssp TTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCC---TTCCH---HHH
T ss_pred hcCCcCCCChHHHHHHHHhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCC---CCCCH---HHH
Confidence 34555555 35666544333322 45776532 22 3468899886544332 22334543 23444 566
Q ss_pred HHHHHHHHHHcCCCC-CCCcceEEeCCCHHHHH--HHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEE
Q 018300 151 TLCQKRALAAFNLDE-NKWGVNVQPLSGSPANF--EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM 227 (358)
Q Consensus 151 ~~~~~~la~lfg~~~-~~~~v~V~~~SGt~A~~--~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~ 227 (358)
+.+.+++.+..+... .+.-+.+...+|..+.. +.+..++.|||+|+++++.+..|.. .+...|..+..+
T Consensus 80 ~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~--------~~~~~g~~~~~~ 151 (412)
T d1yaaa_ 80 SNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMA--------IFENQGLKTATY 151 (412)
T ss_dssp HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHH--------HHHTTTCCEEEE
T ss_pred HHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHH--------HHHHcCCceecc
Confidence 665555544444211 11101111122232322 2234457899999999987665532 234566655555
Q ss_pred eceecCCCCCCCHHHHHHHhhhc--CCeEEEEcCCCCCC--CC---CHHHHHHHHHHcCCEEEEeccccccccccCCccC
Q 018300 228 PYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300 (358)
Q Consensus 228 ~~~~~~~~~~iD~d~le~~i~~~--~~klIi~~~s~~~~--~~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~ 300 (358)
++.-+ ++..+|.+.+++.+... ++++++++.++||+ .. .+++|.++|+++++++++|.++. ++.+.+....
T Consensus 152 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~-~l~~~~~~~~ 229 (412)
T d1yaaa_ 152 PYWAN-ETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQ-GFATGDLDKD 229 (412)
T ss_dssp ECEET-TTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTSSSCHHHH
T ss_pred ccccc-ccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceee-ecccCCcccc
Confidence 54332 35578888887776543 34577777777764 44 38889999999999999999965 6665432111
Q ss_pred CC---------CC--CcEEEEcCcCcC--ccCcEEEEEEeCCCC-chhHHHHH
Q 018300 301 PF---------KY--CDVVTTTTHKSL--RGPRGGMIFFKKDPV-LGVELESA 339 (358)
Q Consensus 301 pl---------~g--aDiv~~S~hK~L--~Gp~GG~I~~~~~~~-~~~~~~~~ 339 (358)
+. +. --+++.|++|.+ +|.|.|++++..+.+ .+.+..+.
T Consensus 230 ~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~ 282 (412)
T d1yaaa_ 230 AYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPA 282 (412)
T ss_dssp THHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHH
T ss_pred hhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHH
Confidence 11 11 127788999985 799999999988755 33344433
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.32 E-value=8.5e-12 Score=117.73 Aligned_cols=203 Identities=14% Similarity=0.076 Sum_probs=118.4
Q ss_pred ccccccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HH
Q 018300 105 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-AN 181 (358)
Q Consensus 105 i~lias~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~ 181 (358)
|+|-..+| .+|+.+++++.+.... . ..||.. +.. ++ ++.+++++|++++ +|.+++|+. ++
T Consensus 25 idls~~~np~~~p~~~~~a~~~~~~~-~-~~Yp~~----~~~---~L----r~aia~~~~v~~~----~I~~~~g~~~~~ 87 (355)
T d1lc5a_ 25 LDFSANINPLGMPVSVKRALIDNLDC-I-ERYPDA----DYF---HL----HQALARHHQVPAS----WILAGNGETESI 87 (355)
T ss_dssp EECSSCCCTTCCCHHHHHHHHHTGGG-G-GSCCCT----TCH---HH----HHHHHHHHTSCGG----GEEEESSHHHHH
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHH-h-ccCCCC----ChH---HH----HHHHHHHhCCCHH----HEEecccHHHHH
Confidence 44433334 3688999999876533 2 235431 111 34 4457888999874 567778876 55
Q ss_pred HHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC
Q 018300 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (358)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~ 261 (358)
..++..+.++++.|. .+.+..+.. .....+..+..++++.+ +...+| +++++.+. .++|+|++..++
T Consensus 88 ~~~~~~~~~~~~~v~--~p~~~~~~~--------~~~~~~~~~~~v~~~~~-~~~~~~-~~~~~~~~-~~~~~v~l~nP~ 154 (355)
T d1lc5a_ 88 FTVASGLKPRRAMIV--TPGFAEYGR--------ALAQSGCEIRRWSLREA-DGWQLT-DAILEALT-PDLDCLFLCTPN 154 (355)
T ss_dssp HHHHHHHCCSEEEEE--ESCCTHHHH--------HHHHTTCEEEEEECCGG-GTTCCC-TTHHHHCC-TTCCEEEEESSC
T ss_pred HHHHhhhcccccccc--CCccceecc--------ccccccccceeeeeecc-CCccce-eeeeeccc-cccceeeeeccc
Confidence 554444433333333 333332211 12244554455554332 223444 45555554 478988887666
Q ss_pred CCC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCCccCCC-C--CCcEEEEcCcCcC--ccCcEEEEEEeCCCC
Q 018300 262 YPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K--YCDVVTTTTHKSL--RGPRGGMIFFKKDPV 331 (358)
Q Consensus 262 ~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl-~--gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~ 331 (358)
+|+ ..+ +++|.++|+++++++++|.++. .+...+....++ . .-.+++.|++|++ +|.|.|+++++++
T Consensus 155 NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~-~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~-- 231 (355)
T d1lc5a_ 155 NPTGLLPERPLLQAIADRCKSLNINLILDEAFI-DFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDD-- 231 (355)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG-GGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCH--
T ss_pred Ccccccchhhhhhhhhhhcccccccccccccee-eeeeecccccccccccccceeecccccccccccccccceeccch--
Confidence 653 444 6778889999999999999976 333222111111 1 2348889999985 6889999998775
Q ss_pred chhHHHHHHhhc
Q 018300 332 LGVELESAINNA 343 (358)
Q Consensus 332 ~~~~~~~~i~~~ 343 (358)
.+.+.++..
T Consensus 232 ---~~~~~~~~~ 240 (355)
T d1lc5a_ 232 ---AAMARMRRQ 240 (355)
T ss_dssp ---HHHHHHHHH
T ss_pred ---hhhHHHHhh
Confidence 455555543
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.31 E-value=4.4e-13 Score=126.21 Aligned_cols=200 Identities=10% Similarity=-0.050 Sum_probs=119.3
Q ss_pred cccccCCCCcHHHHHHHhhhhhcccCCCC-CCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-H-HH
Q 018300 106 ELIASENFTSRAVMEAVGSCLTNKYSEGL-PGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-A-NF 182 (358)
Q Consensus 106 ~lias~n~~s~~V~~al~~~l~~~~~~G~-pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A-~~ 182 (358)
+..|++..+|++|+++|...+.+.+..|. .....+.+.++.+.+++ +|+.++++|+++.+ ..|.+++||. + +.
T Consensus 6 nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~-~r~~l~~l~~~~~~---~~i~~~~gt~~~~~~ 81 (360)
T d1w23a_ 6 NFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQ-AQNLLRELLQIPND---YQILFLQGGASLQFT 81 (360)
T ss_dssp ECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHH-HHHHHHHHHTCCTT---EEEEEESSHHHHHHH
T ss_pred EeCCCCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHH-HHHHHHHHhCCCCC---CEEEEeCCcHHHHHH
Confidence 56688999999999999988765432211 10112234556565555 89999999999764 3466667664 4 44
Q ss_pred HHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCC
Q 018300 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262 (358)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~ 262 (358)
++...+.++++.|++... ++....+ +......+........+. ....+++++++... ..+...+. ...
T Consensus 82 ~~~~~~~~~~~~v~~~~~---g~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~-~~t 149 (360)
T d1w23a_ 82 MLPMNLLTKGTIGNYVLT---GSWSEKA---LKEAKLLGETHIAASTKA---NSYQSIPDFSEFQL--NENDAYLH-ITS 149 (360)
T ss_dssp HHHHHHCCTTCEEEEEEC---SHHHHHH---HHHHHTTSEEEEEEECGG---GTSCSCCCGGGCCC--CTTEEEEE-EES
T ss_pred HHHhhhcccCcccceeec---cchhhhh---HHHHHHhhhcceeecccc---ccccchhhhhhccc--ccccceeE-ecC
Confidence 455556788888887642 3333221 112233444333333222 22333344444332 22333332 234
Q ss_pred CCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcEEEEEEe
Q 018300 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRGGMIFFK 327 (358)
Q Consensus 263 ~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~GG~I~~~ 327 (358)
+...|+++|.++|+++|+++++|++|++|.. +.+++ ++|+++++.||++++ .+|+++.+
T Consensus 150 g~~~~~~~i~~~~~~~g~l~ivDavqs~g~~-----~id~~~~~vd~~~~~~~k~~~~-~~~~~~~~ 210 (360)
T d1w23a_ 150 NNTIYGTQYQNFPEINHAPLIADMSSDILSR-----PLKVNQFGMIYAGAQKNLGPSG-VTVVIVKK 210 (360)
T ss_dssp EETTTTEECSSCCCCCSSCEEEECTTTTTSS-----CCCGGGCSEEEEETTTTTSCTT-CEEEEEEH
T ss_pred CccccceeeeeccccceeeEEeecccccccc-----ccccccccceEEeeccccccCC-cceeeEec
Confidence 6677899999999999999999999998864 23344 677777777775433 33444433
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=1.2e-12 Score=125.99 Aligned_cols=223 Identities=16% Similarity=0.096 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHhh-hccccccc----C---CCCcHHHHHHHhhhhhccc-CCCCCCCcCCCCcHHHHHHHHHHHHHHHHH
Q 018300 90 VCEIITKEKERQF-KSLELIAS----E---NFTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (358)
Q Consensus 90 ~~~~i~~e~~~~~-~~i~lias----~---n~~s~~V~~al~~~l~~~~-~~G~pg~r~~~G~~~~~~lE~~~~~~la~l 160 (358)
++.++++-+...+ +.|+|--+ + .++.+.|++|......+.. ..+|+. ..|.+ ++++.+++++.+.
T Consensus 13 i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p---~~G~~---~lR~aia~~~~~~ 86 (397)
T d3tata_ 13 ILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLP---MEGLN---CYRHAIAPLLFGA 86 (397)
T ss_dssp TTTHHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCC---TTCCH---HHHHHHHHHHTCS
T ss_pred HHHHHHHHhcCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCC---cccCH---HHHHHHHHHHhhc
Confidence 4566665444333 55776533 1 2456889999764332221 223433 23444 5666555554444
Q ss_pred cCCCCCCCcceEEeCCC-HH----HHHHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCC
Q 018300 161 FNLDENKWGVNVQPLSG-SP----ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST 235 (358)
Q Consensus 161 fg~~~~~~~v~V~~~SG-t~----A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 235 (358)
.+.... . -++..+.| +. ++.+++.+++.|||+|++++|.+.+|.. .+...|. ++++++++.++
T Consensus 87 ~~~~~~-~-~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~--------~~~~~G~--~~~~v~~~~~~ 154 (397)
T d3tata_ 87 DHPVLK-Q-QRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVA--------IFAGAGF--EVSTYPWYDEA 154 (397)
T ss_dssp SCHHHH-T-TCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHH--------HHHTTTC--CCEECCCCCTT
T ss_pred cCCcCC-c-CcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHH--------HHHHcCC--EEEEEecchhh
Confidence 343210 0 12333322 22 3555566678999999999987766533 3345565 44555565443
Q ss_pred -CCCCHHHHHHHhhh--cCCeEEEEcCCCCCC--CCC---HHHHHHHHHHcCCEEEEeccccccccccCCc-cCCC----
Q 018300 236 -GLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPF---- 302 (358)
Q Consensus 236 -~~iD~d~le~~i~~--~~~klIi~~~s~~~~--~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~-~~pl---- 302 (358)
..+|.+++.+.+.. .+++++++..++||+ ..+ +++|.++|+++++++++|.++. ++.+.+.. +..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~-~l~~~~~~~~~~~~~~~ 233 (397)
T d3tata_ 155 TNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQ-GFGAGMEEDAYAIRAIA 233 (397)
T ss_dssp TSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCT-TSSSCHHHHHHHHHHHH
T ss_pred ccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhh-hhccCCcccchhhhhhh
Confidence 46888887776543 245677777667654 443 7789999999999999999965 55543221 1111
Q ss_pred C-CC-cEEEEcCcCcC--ccCcEEEEEEeCCCC
Q 018300 303 K-YC-DVVTTTTHKSL--RGPRGGMIFFKKDPV 331 (358)
Q Consensus 303 ~-ga-Div~~S~hK~L--~Gp~GG~I~~~~~~~ 331 (358)
+ +- -+++.|++|++ +|+|.|++++....+
T Consensus 234 ~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~ 266 (397)
T d3tata_ 234 SAGLPALVSNSFSKIFSLYGERVGGLSVMCEDA 266 (397)
T ss_dssp TTTCCCEECBCCHHHHTBTTTCCBCCEEECSST
T ss_pred hcCCceEEEecCcccccccCccccccccchhHH
Confidence 1 11 27788999984 789999999888755
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=2.1e-11 Score=115.09 Aligned_cols=166 Identities=13% Similarity=0.072 Sum_probs=109.9
Q ss_pred HHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHhccCCC-EEEecCCCCCcccccccccchhccccCCceEEEEece
Q 018300 153 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (358)
Q Consensus 153 ~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~all~pGD-~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~ 230 (358)
.++++++++|++++ +|.+++|+ +|+..++.++++||| +|+++++.+..+.. .....|. ++..++
T Consensus 61 Lr~~ia~~~gv~pe----~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~--------~~~~~g~--~v~~~~ 126 (354)
T d1fg7a_ 61 VIENYAQYAGVKPE----QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSV--------SAETIGV--ECRTVP 126 (354)
T ss_dssp HHHHHHHHHTSCGG----GEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHH--------HHHHHTC--EEEECC
T ss_pred HHHHHHHHhCCChH----HeeeccCchHHHHHHHHHhhccccccccccccccccchh--------hhhccCc--eeeccc
Confidence 35568899999985 56667776 499999999999999 57777776554321 2334565 445555
Q ss_pred ecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--CCCCHH---HHHHHHHHcCCEEEEeccccccccccCCccCCCC--
Q 018300 231 LDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYP---RMRQIADAVGALLMMDMAHISGLVAASVVADPFK-- 303 (358)
Q Consensus 231 ~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~--~~~dl~---~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-- 303 (358)
.+ ++..+|++++++.+ .++|+|++..+++| ...+-+ .+.+.++ .+.++++|.+++ .+......+....
T Consensus 127 ~~-~~~~~d~~~l~~~~--~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~-~f~~~~~~~~~~~~~ 201 (354)
T d1fg7a_ 127 TL-DNWQLDLQGISDKL--DGVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYI-EFCPQASLAGWLAEY 201 (354)
T ss_dssp CC-TTSCCCHHHHHTSC--TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTG-GGSGGGCSGGGTTTC
T ss_pred cc-cccccchhhhhhcc--cccceeeccCCCccceeEeeeccccccccccc-ccccccccccch-hhccccccchhhccc
Confidence 55 45689999998865 36888888777765 345543 3444443 577778787755 3332222221222
Q ss_pred CCcEEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHHhhc
Q 018300 304 YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (358)
Q Consensus 304 gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i~~~ 343 (358)
.--+++.|++|++ +|.|.|++++++ ++.+++...
T Consensus 202 ~~~iv~~S~SK~~~laGlRiGy~i~~~------~~i~~l~~~ 237 (354)
T d1fg7a_ 202 PHLAILRTLSKAFALAGLRCGFTLANE------EVINLLMKV 237 (354)
T ss_dssp TTEEEEEESSSTTCCGGGCCEEEEECH------HHHHHHHHH
T ss_pred ccceEEeCCccccCCCccccccccccc------hhhhhhhhh
Confidence 2347788999985 788999999887 455566554
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=1e-12 Score=122.77 Aligned_cols=201 Identities=11% Similarity=-0.004 Sum_probs=118.7
Q ss_pred ccccccCCCCcHHHHHHHhhhhhcccCCCCCCC-cCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCH--HHH
Q 018300 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS--PAN 181 (358)
Q Consensus 105 i~lias~n~~s~~V~~al~~~l~~~~~~G~pg~-r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt--~A~ 181 (358)
.|+.|++..+|++|+++|...+.+.+..|.+.. -.+.+.++.+.+++ +++.++++||++.. ..|++++|+ .++
T Consensus 3 ~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~-~r~~l~~l~~~~~~---~~v~~~~gs~t~~~ 78 (360)
T d1bjna_ 3 FNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEE-AEKDFRDLLNVPSN---YKVLFCHGGGRGQF 78 (360)
T ss_dssp EECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHH-HHHHHHHHHTCCTT---EEEEEESSHHHHHH
T ss_pred EEeCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHH-HHHHHHHHhCCCCC---CEEEEECCchHHHH
Confidence 366799999999999999998776543222110 01235566666665 89999999999764 234444433 356
Q ss_pred HHHHHHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEE--cC
Q 018300 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA--GA 259 (358)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~--~~ 259 (358)
.++...+..++|.+++... ++....+. ......+........+. ....|.+++++.+. .+++++.+ ..
T Consensus 79 ~a~~~~~~~~~~~v~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~v~v~~~~ 148 (360)
T d1bjna_ 79 AAVPLNILGDKTTADYVDA---GYWAASAI---KEAKKYCTPNVFDAKVT---VDGLRAVKPMREWQ-LSDNAAYMHYCP 148 (360)
T ss_dssp HHHHHHHCTTCCEEEEEES---SHHHHHHH---HHHTTTSEEEEEECEEE---ETTEEEECCGGGCC-CCSSCSCEEECS
T ss_pred hhhhhcccccccccceecc---cchhhhhH---HHHhhcCccceeecccc---CCCcchhhhhhhhc-cCCceeEEEecc
Confidence 6666667888898888652 22211110 11223333222222222 23344444444443 35554433 33
Q ss_pred CCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC--CCcEEEEcCcCcCccCcE-EEEEEeC
Q 018300 260 SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKK 328 (358)
Q Consensus 260 s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~--gaDiv~~S~hK~L~Gp~G-G~I~~~~ 328 (358)
+.++...+++.+ .++.+++++++|++++++- .+++ ++|+.++|+||++.+|.| ++++..+
T Consensus 149 ~~t~~~~~~~~i--~~~~~~~~v~vDa~~~~~~-------~~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~ 211 (360)
T d1bjna_ 149 NETIDGIAIDET--PDFGADVVVAADFSSTILS-------RPIDVSRYGVIYAGAQKNIGPAGLTIVIVRED 211 (360)
T ss_dssp EETTTTEECCCC--CCCCTTCCEEEECTTTTTS-------SCCCGGGCSEEEEETTTTTSSTTCEEEEEEGG
T ss_pred cccccCccccce--ecccccceeeeeeeccccc-------eeeeeccceeEEEEcccccccCCCceeEeeeh
Confidence 334555555444 3567899999999876553 2444 899999999999988776 4444443
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.05 E-value=1.1e-09 Score=102.51 Aligned_cols=194 Identities=16% Similarity=0.095 Sum_probs=115.4
Q ss_pred ccCC--CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHH-HHHHHH
Q 018300 109 ASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVY 185 (358)
Q Consensus 109 as~n--~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~-A~~~a~ 185 (358)
-.|| .+|+.+++++...+.......||. .|.+ ++++. ++++++.+.-.. -+|.+++|+. |+.++
T Consensus 26 ~~enp~~~p~~i~~~~~~~~~~~~~~~yp~----~g~~---~Lr~a----ia~~~~~~~v~~-d~I~it~G~~~~l~~l- 92 (334)
T d2f8ja1 26 LNENPFPFPEDLVDEVFRRLNSDALRIYYD----SPDE---ELIEK----ILSYLDTDFLSK-NNVSVGNGADEIIYVM- 92 (334)
T ss_dssp SCCCSSCCCHHHHHHHHHHCCTTGGGSCCC----SSCH---HHHHH----HHHHHTCSSCCG-GGEEEEEHHHHHHHHH-
T ss_pred CCCCCCCCCHHHHHHHHHHhhcchhcCCCC----CCcH---HHHHH----HHHHhcccCCCc-ceEEecCcchhHHHHH-
Confidence 3445 468889999877765443333443 2333 34443 455555431111 2577788875 55543
Q ss_pred HHhccCCCEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCC--
Q 018300 186 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP-- 263 (358)
Q Consensus 186 ~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~-- 263 (358)
+++||+|++.+|.|.++.. .....|. ++++++++++....+ +...+++++++..+++|
T Consensus 93 ---~~~~d~v~i~~P~y~~~~~--------~~~~~g~--~~v~v~~~~~~~~~~-------~~~~~~~~l~l~nP~NPtG 152 (334)
T d2f8ja1 93 ---MLMFDRSVFFPPTYSCYRI--------FAKAVGA--KFLEVPLTKDLRIPE-------VNVGEGDVVFIPNPNNPTG 152 (334)
T ss_dssp ---HHHSSEEEECSSCCHHHHH--------HHHHHTC--CEEECCCCTTSCCCC-------CCCCTTEEEEEESSCTTTC
T ss_pred ---hhhcccccccccccccccc--------chhccCC--ccccccccccccccc-------cccccceEEEecccccccc
Confidence 4568999999887665422 2334565 556666765433221 12236788887666654
Q ss_pred CCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCcC--ccCcEEEEEEeCCCCchhHHHHHH
Q 018300 264 RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAI 340 (358)
Q Consensus 264 ~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L--~Gp~GG~I~~~~~~~~~~~~~~~i 340 (358)
...+.++|.+++ ++++++++|.++.- ............ .--+++.|++|++ +|.|.|++++++ ++.+++
T Consensus 153 ~~~s~~~l~~~~-~~~~~ii~Dd~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~------~~i~~l 224 (334)
T d2f8ja1 153 HVFEREEIERIL-KTGAFVALDEAYYE-FHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASE------KFIDAY 224 (334)
T ss_dssp CCCCHHHHHHHH-TTTCEEEEECTTGG-GTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECH------HHHHHH
T ss_pred eeecHHHhhccc-cceeEEeecccchh-hcccccccccccCceEEEEecCccccchhhhhhhhcccch------HHHHHH
Confidence 577877777654 57999999998653 222111111111 2237889999985 678999999976 566666
Q ss_pred hhc
Q 018300 341 NNA 343 (358)
Q Consensus 341 ~~~ 343 (358)
...
T Consensus 225 ~~~ 227 (334)
T d2f8ja1 225 NRV 227 (334)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=98.92 E-value=1.1e-08 Score=91.27 Aligned_cols=190 Identities=13% Similarity=0.169 Sum_probs=109.8
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEe-CCCHHHHHHHHHHhccCC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGSPANFEVYTAILKPH 192 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~-~SGt~A~~~a~~all~pG 192 (358)
++|.|++||.+..... ..| |+..+ ..+.+|+++++++|++++ +|++ .+||+||+.++.++.+++
T Consensus 12 ~~P~v~eAl~~~~~~~-~~~------y~~~~----~~~~lr~~ia~~~g~~~~----~v~~tsggtean~~a~~~~~~~~ 76 (340)
T d1svva_ 12 MHPKILDLMARDNMTQ-HAG------YGQDS----HCAKAARLIGELLERPDA----DVHFISGGTQTNLIACSLALRPW 76 (340)
T ss_dssp CCHHHHHHHHHHTTCC-CCS------TTCSH----HHHHHHHHHHHHHTCTTS----EEEEESCHHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHHHHHhhcC-CCC------CCCCH----HHHHHHHHHHHHhCCCcc----eEEEcCCHHHHHHHHHHHHhhhc
Confidence 4899999998654322 112 22223 334478889999999874 4544 567889999999999999
Q ss_pred CEEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhc----CC--eEEEEcCC-CCCCC
Q 018300 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF----RP--KLIIAGAS-AYPRD 265 (358)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~----~~--klIi~~~s-~~~~~ 265 (358)
++++.....+.++..... ....+. .... ........+.+...+..... .+ .++++..+ +.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (340)
T d1svva_ 77 EAVIATQLGHISTHETGA------IEATGH--KVVT--APCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQ 146 (340)
T ss_dssp EEEEEETTSHHHHSSTTH------HHHTTC--CEEE--ECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCC
T ss_pred cccccccccceeeeeccc------ccccce--eeee--cccccccccchhHHHHhhhhhcccCCcceeeeeccccccccc
Confidence 999887765444322211 111111 1111 11122333434333332211 12 23444333 34444
Q ss_pred C---CHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC----CCcEEEEcCcCcCccCcEEEEEEeC
Q 018300 266 F---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLRGPRGGMIFFKK 328 (358)
Q Consensus 266 ~---dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~----gaDiv~~S~hK~L~Gp~GG~I~~~~ 328 (358)
. ++..+.++|+++|+++++|.+|..+....+....... ..++...+..|...++.+++.....
T Consensus 147 ~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (340)
T d1svva_ 147 YTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILND 216 (340)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSG
T ss_pred ccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccch
Confidence 4 3566778999999999999999866554332211111 3457778888877666666665544
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=98.52 E-value=4.1e-08 Score=95.14 Aligned_cols=151 Identities=13% Similarity=0.035 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceEEeCCCH-HHHHHHHHHh--------ccCCCEEEecCCCCCcccccccccchhccc
Q 018300 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI--------LKPHDRIMGLDLPHGGHLSHGFMTPKRRVS 218 (358)
Q Consensus 148 ~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt-~A~~~a~~al--------l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~ 218 (358)
+|++.+++.....-++..++ -.|.+++|+ +++.+++.+| ++|||+|+++.|.|..+.. .+.
T Consensus 104 ~L~~~i~~lh~~~gna~t~~--~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~--------~~~ 173 (425)
T d2hoxa1 104 ELEKTIKELHEVVGNAAAKD--RYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFRE--------QTK 173 (425)
T ss_dssp HHHHHHHHHHHHHTCBCCTT--CEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHH--------HHH
T ss_pred HHHHHHHHHHhhhCCCCCCC--CEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHH--------HHH
Confidence 57776555333333332222 246677775 5999999998 5799999999986655422 122
Q ss_pred cCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCCCCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCc
Q 018300 219 GTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 298 (358)
Q Consensus 219 ~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~ 298 (358)
+.+.. ...+ .+|.+.+++.++. +++++++..|+||+-. + .-+-.+++.+|+|.++. +..+
T Consensus 174 ~~~~~--~~~~-------~~D~~~~~~~~~~-~~~ii~l~sPnNPtG~-l----~~~v~~~~~~I~DEaY~-~~~f---- 233 (425)
T d2hoxa1 174 YFDKK--GYVW-------AGNAANYVNVSNP-EQYIEMVTSPNNPEGL-L----RHAVIKGCKSIYDMVYY-WPHY---- 233 (425)
T ss_dssp HSCBT--TEEE-------EEEGGGGTTCSCG-GGEEEEEESSCTTTCC-C----CCCSSTTCEEEEECTTC-STTT----
T ss_pred HcCCC--CCcc-------CCCHHHHHhhCCC-CceEEEEECCCCCCcc-h----hhhhhhCCEEEEecccc-Cccc----
Confidence 23221 1111 2355666655543 6889888888887521 0 00123589999999864 2111
Q ss_pred cCCCC---CCcEEEEcCcCcC--ccCcEEEEEEeCC
Q 018300 299 ADPFK---YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (358)
Q Consensus 299 ~~pl~---gaDiv~~S~hK~L--~Gp~GG~I~~~~~ 329 (358)
.++. .-++++.|++|++ +|.|-|++++.++
T Consensus 234 -~~~~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~ 268 (425)
T d2hoxa1 234 -TPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDE 268 (425)
T ss_dssp -SCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCH
T ss_pred -cchhhhcCCeEEEEeCHHhccCcchheeeEEeCCH
Confidence 2222 3469999999995 7889999888775
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=98.51 E-value=6.6e-07 Score=86.32 Aligned_cols=190 Identities=18% Similarity=0.093 Sum_probs=105.9
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--cc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~ 190 (358)
+-+|.|.+|+...+..... . ..... .+..+.+++.+++.... ...+..||++|+..++... ..
T Consensus 68 h~hp~i~~ai~~~~~~~~~---~----~~~~~----~~~~la~~~~~~~~~~~----~v~f~~sGseA~e~Alk~ar~~t 132 (427)
T d2gsaa_ 68 HAHPEVIEALKVAMEKGTS---F----GAPCA----LENVLAEMVNDAVPSIE----MVRFVNSGTEACMAVLRLMRAYT 132 (427)
T ss_dssp BTCHHHHHHHHHHHTTCSC---C----SSCCH----HHHHHHHHHHHHSTTCS----EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCc---c----ccchh----HHHHHHHHHHhhCCccc----cccccCCcHHHHHHHHHHHHHhc
Confidence 3488999998877643211 1 11222 22234455666665433 2356779999999998754 33
Q ss_pred CCCEEEecCCCCCcccccccccchhccccCCceEEEE--e------ceecCC---CCCCCHHHHHHHhhhc--CCeEEEE
Q 018300 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM--P------YRLDES---TGLVDYDMLEKTAILF--RPKLIIA 257 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~--~------~~~~~~---~~~iD~d~le~~i~~~--~~klIi~ 257 (358)
..++|+..+..|.|.-. + .+...+...... + .+..++ ...-|++.+++++.+. +...|++
T Consensus 133 ~r~~ii~~~~~yHG~t~-~------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~ 205 (427)
T d2gsaa_ 133 GRDKIIKFEGCYHGHAD-M------FLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVIL 205 (427)
T ss_dssp CCCEEEEETTCCCCSCG-G------GCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEE
T ss_pred CCCeEEEEecccccCcc-e------eeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEE
Confidence 45678877643333210 0 111111000000 0 000000 1145889999988753 3346777
Q ss_pred cCC--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCcc-CcEEEEEEe
Q 018300 258 GAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PRGGMIFFK 327 (358)
Q Consensus 258 ~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~G-p~GG~I~~~ 327 (358)
++- +.|...+ +++|.++|++||++||+|+.|+ |+. .|... .-++ ..|+++++ |.+.| -..|+++++
T Consensus 206 Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~t-G~r-~g~~~~~~~~gi~PDi~~~g--K~lggG~p~~a~~~~ 281 (427)
T d2gsaa_ 206 EPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMT-GFR-IAYGGVQEKFGVTPDLTTLG--KIIGGGLPVGAYGGK 281 (427)
T ss_dssp CSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BTT-TBTTCHHHHTTCCCSEEEEC--GGGGTTSCCEEEEEC
T ss_pred cCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccc-cce-ecccchHHhcCCCHHHHhhh--hccCCCcceeeeeeh
Confidence 652 2344333 8999999999999999999996 653 33211 1122 46898877 77744 233556666
Q ss_pred C
Q 018300 328 K 328 (358)
Q Consensus 328 ~ 328 (358)
+
T Consensus 282 ~ 282 (427)
T d2gsaa_ 282 R 282 (427)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.47 E-value=2.4e-07 Score=89.85 Aligned_cols=156 Identities=16% Similarity=0.084 Sum_probs=99.1
Q ss_pred HHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccCCCEEEecCCCCCcccccccccchhccccCCceEEEEec
Q 018300 152 LCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY 229 (358)
Q Consensus 152 ~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~ 229 (358)
..+++++++.|.+. ++.++..|++|...+++.. ....+++++....|..+ |+- .. ..+...|. +++.+
T Consensus 112 e~q~~l~eltGmd~----~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~--~~v-~~-t~a~~~g~--~vv~v 181 (437)
T d1wyua1 112 EYQTMIAELAGLEI----ANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEY--RAV-LR-AYLEAVGA--KLLTL 181 (437)
T ss_dssp HHHHHHHHHHTSSE----ECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHH--HHH-HH-HHHHHTTC--EEEEE
T ss_pred HHHHHHHHhhCCCc----cccCchHHHHHHHHHHHHHHhhhcccccccccccChHH--hhh-hh-hhccccee--eEEee
Confidence 35778999999997 5888999988766655443 34567888776544332 211 00 11233454 55555
Q ss_pred eecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-CCCCCCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcE
Q 018300 230 RLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDV 307 (358)
Q Consensus 230 ~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~-~~~~~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDi 307 (358)
+.+ ++..+.++ +.+ ++..|++..++ +|...|+++|.+++++.|+++++|+.-. .+. ....|-+ |+||
T Consensus 182 ~~~--~~~~~~~~----~~~-~~Aavmi~~Pnt~G~~ed~~~i~~~~h~~G~l~~~~ad~~-al~---~l~~Pg~~GaDi 250 (437)
T d1wyua1 182 PLE--GGRTPLPE----VGE-EVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPL-SLG---VLKPPGAYGADI 250 (437)
T ss_dssp CCB--TTBCCCCC----CCT-TEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTT-GGG---TBCCHHHHTCSE
T ss_pred ecc--cccchhhh----hcc-ceeEEEEccccccccccchHHHHHHhhhccceEEeeechh-hhh---ccccccccccce
Confidence 554 23333222 232 45556665555 6777899999999999999988886532 221 2223445 9999
Q ss_pred EEEcCcCcC------ccCcEEEEEEeCC
Q 018300 308 VTTTTHKSL------RGPRGGMIFFKKD 329 (358)
Q Consensus 308 v~~S~hK~L------~Gp~GG~I~~~~~ 329 (358)
++++ ||.| +||.+|++.++++
T Consensus 251 ~~g~-~q~fg~p~g~GGP~~G~~a~~~~ 277 (437)
T d1wyua1 251 AVGD-GQSLGLPMGFGGPHFGFLATKKA 277 (437)
T ss_dssp EEEE-CTTTTCCCGGGCSCCEEEEECGG
T ss_pred Eeec-cceeccccCCCcCccccccccch
Confidence 9988 5554 5677799999875
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=5.8e-07 Score=86.15 Aligned_cols=184 Identities=16% Similarity=0.148 Sum_probs=104.2
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc---
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all--- 189 (358)
+-+|.|.+|+.+.+.. .. +....++ ++...+ +.+++.++.+.+. ....+||++|+..++....
T Consensus 57 h~~p~i~~Av~~q~~~-~~--~~~~~~~--~~~~~~----~~~~~~~~~~~~~-----v~~~~sGseA~e~Aik~ar~~~ 122 (404)
T d2byla1 57 HCHPKIVNALKSQVDK-LT--LTSRAFY--NNVLGE----YEEYITKLFNYHK-----VLPMNTGVEAGETACKLARKWG 122 (404)
T ss_dssp BTCHHHHHHHHHHHTT-CC--CCCTTEE--ESSHHH----HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhh-CC--Ccccccc--cchHHH----HHHhhhhcccccc-----cccccCccccchhHHHHHHHHh
Confidence 4588899998876643 21 1111111 121222 3345677777654 3567899999999986531
Q ss_pred ------c-CCCEEEecCCCCCcccccccccchhccccCCc------------eEEEEeceecCCCCCCCHHHHHHHhhhc
Q 018300 190 ------K-PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDESTGLVDYDMLEKTAILF 250 (358)
Q Consensus 190 ------~-pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~~iD~d~le~~i~~~ 250 (358)
. ...+|+...-.+.|.-. ......+. .+..++ ..|++++++.+...
T Consensus 123 ~~~~~~~~~~~~i~~~~~~~hg~t~-------~~~~~~~~~~~~~~~~p~~~~~~~~p--------~~d~~~l~~~l~~~ 187 (404)
T d2byla1 123 YTVKGIQKYKAKIVFAAGNFWGRTL-------SAISSSTDPTSYDGFGPFMPGFDIIP--------YNDLPALERALQDP 187 (404)
T ss_dssp HHTTCCCTTCCEEEEETTCCCCCSH-------HHHTTCCCHHHHTTSCSCCTTEEEEC--------TTCHHHHHHHHTST
T ss_pred hhccccccccccccccCCCcccccc-------ceeccCCCcccccCCCCCCCCeeEec--------ccCHHHHHHhcCCC
Confidence 1 22356655422222100 01111110 011111 34789999988655
Q ss_pred CCeEEEEcCC--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCcc--C
Q 018300 251 RPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG--P 319 (358)
Q Consensus 251 ~~klIi~~~s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~G--p 319 (358)
+...|++++- +.|...+ +++|.++|+++|+++|+|+.|+ |+.-.|..- .-++ ..|+++++ |.|.| .
T Consensus 188 ~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-GfgR~G~~~a~~~~gv~PDi~~~g--K~l~gG~~ 264 (404)
T d2byla1 188 NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT-GLARTGRWLAVDYENVRPDIVLLG--KALSGGLY 264 (404)
T ss_dssp TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSS
T ss_pred CeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccc-ccccccccchhhhcCCCCCEEEEC--chhhCCCc
Confidence 5566777652 2232222 8999999999999999999985 553233211 1122 45998665 99854 4
Q ss_pred cEEEEEEeC
Q 018300 320 RGGMIFFKK 328 (358)
Q Consensus 320 ~GG~I~~~~ 328 (358)
..|.+++++
T Consensus 265 p~~av~~~~ 273 (404)
T d2byla1 265 PVSAVLCDD 273 (404)
T ss_dssp CCEEEEECH
T ss_pred cceeeeech
Confidence 667777776
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=98.35 E-value=2.5e-06 Score=81.09 Aligned_cols=184 Identities=18% Similarity=0.153 Sum_probs=101.1
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~p 191 (358)
-+|.|.+|+...+.+... .+. .+ .++.. ++ ..+++.+....... ...+..||++|+..++... ...
T Consensus 54 ~hp~v~~a~~~~~~~~~~--~~~--~~-~~~~~---~~-la~~l~~~~~~~~~---~v~f~~sGseA~e~Aik~Ar~~t~ 121 (387)
T d1vefa1 54 GNPEVVEAVKRQAETLMA--MPQ--TL-PTPMR---GE-FYRTLTAILPPELN---RVFPVNSGTEANEAALKFARAHTG 121 (387)
T ss_dssp TCHHHHHHHHHHHHHCCC--CCT--TS-CCHHH---HH-HHHHHHHTSCTTEE---EEEEESSHHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHhhcc--ccc--cc-CCchH---HH-HHHHhhhhccccce---eeccccCchHHHHHHHHHHHhhcc
Confidence 378888888877654321 111 11 12321 22 22334444333221 2456779999999998754 334
Q ss_pred CCEEEecCCCCCcccccccccchhccccCCc------------eEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcC
Q 018300 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~ 259 (358)
..+|+.....|.|.-.. ....++. .+..++ ..|.+.|++.+.+ +...|++++
T Consensus 122 r~~ii~~~~~yHG~t~~-------~~~~s~~~~~~~~~~p~~~~~~~~p--------~~d~~~l~~~~~~-~iAavi~EP 185 (387)
T d1vefa1 122 RKKFVAAMRGFSGRTMG-------SLSVTWEPKYREPFLPLVEPVEFIP--------YNDVEALKRAVDE-ETAAVILEP 185 (387)
T ss_dssp CCEEEEETTCCCCSSHH-------HHHTCCCHHHHGGGCSCSSCEEEEC--------TTCHHHHHHHCCT-TEEEEEECS
T ss_pred cceecccccCCCCCccc-------eEeccCCccccCCCCCCCCCceEeC--------CCCHHHHHHhcCC-CeEEEEEEC
Confidence 56787766433332110 1111110 111111 2478999988764 566777764
Q ss_pred --CCCCCC-CC---HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCcc-CcEEEEEEeC
Q 018300 260 --SAYPRD-FD---YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKK 328 (358)
Q Consensus 260 --s~~~~~-~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~G-p~GG~I~~~~ 328 (358)
.+.|.. .+ ++++.++|+++|+++|.|+.++ |+.-.|..- .-++ ..|+++++ |.|.| -.-+.++.++
T Consensus 186 i~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-GfgR~G~~~~~~~~~v~PDi~~~g--K~l~gG~~~~~~~~~~ 261 (387)
T d1vefa1 186 VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT-GMGRTGKRFAFEHFGIVPDILTLA--KALGGGVPLGVAVMRE 261 (387)
T ss_dssp EETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTSSCEEEEEEH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCceEEeccccc-ccCccCCCcccccCCcCCceeeec--ccCCCCccccccccce
Confidence 223432 22 8999999999999999999986 442222210 1112 46898777 88844 2234445554
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=98.33 E-value=5.5e-06 Score=79.03 Aligned_cols=191 Identities=14% Similarity=0.066 Sum_probs=99.6
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc----
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all---- 189 (358)
-+|.|.+|+.+.+.+. . +.. +.+. ......+ .+.+.++.+.+. ..+..||+.|+..++....
T Consensus 56 ~~p~v~~Ai~~q~~~~-~--~~~-~~~~-~~~~~~~----~~~~~~~~~~~~-----v~~~~sgs~a~~~a~k~ar~~~~ 121 (404)
T d1z7da1 56 CHPNILNAMINQAKNL-T--ICS-RAFF-SVPLGIC----ERYLTNLLGYDK-----VLMMNTGAEANETAYKLCRKWGY 121 (404)
T ss_dssp TCHHHHHHHHHHHTTC-S--CCC-TTSE-EHHHHHH----HHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhC-C--Ccc-cccc-hHHHHHH----HHhhhhccccce-----eeeeccccchHHHHHHHHHHHHh
Confidence 4888999987765432 1 111 1111 2222333 344667777654 3567899999988875431
Q ss_pred ------cCCCEEEecCCCCCcccccccccchhccccCCce-EEEEeceecCCC---CCCCHHHHHHHhhhcCCeEEEEcC
Q 018300 190 ------KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAILFRPKLIIAGA 259 (358)
Q Consensus 190 ------~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~iD~d~le~~i~~~~~klIi~~~ 259 (358)
....+++....-+.|.... .....+.. +...+.+..+.. ..-+.+.++..+...+...|++++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~hg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EP 194 (404)
T d1z7da1 122 EVKKIPENMAKIVVCKNNFSGRTLG-------CISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEP 194 (404)
T ss_dssp HTSCCCTTCCEEEEETTC---------------------------------CEEEECTTCHHHHHHHHTSTTEEEEEECS
T ss_pred hcccccccccccccccccCCCCccc-------ccccccccccccCCCCCCccccccccchHHHHHHHhcCCCEEEEEEEE
Confidence 1223566554222111100 01111110 000000000000 123567777766554556778765
Q ss_pred C--CCCCCCC----HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCcc--CcEEEEEEeC
Q 018300 260 S--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG--PRGGMIFFKK 328 (358)
Q Consensus 260 s--~~~~~~d----l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~G--p~GG~I~~~~ 328 (358)
- +.|...+ +++|+++|+++|+++|+|+.|+ |+.-.|..- .-++ ..|+++++ |.|.| ...|.++.++
T Consensus 195 i~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~t-GfgRtG~~~~~e~~gv~PDivt~g--K~l~gG~~p~~~v~~~~ 271 (404)
T d1z7da1 195 IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GLGRTGKLLCVHHYNVKPDVILLG--KALSGGHYPISAVLAND 271 (404)
T ss_dssp SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECH
T ss_pred EcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCcc-CCCcccccccccccCCCCCEEEEc--ccccCCCCCcccccchH
Confidence 2 2233333 8999999999999999999996 653333211 1223 56998666 99954 5678888877
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=8.3e-05 Score=70.99 Aligned_cols=203 Identities=14% Similarity=-0.021 Sum_probs=99.7
Q ss_pred CCcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--cc
Q 018300 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (358)
Q Consensus 113 ~~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~ 190 (358)
+-+|.|.+|+.+.+.. +....+. ...++ .+....+++.+++.-+..+ ...+.+|||+|+..++... ..
T Consensus 56 h~~p~i~~ai~~q~~~-~~~~~~~---~~~~~----~~~~la~~l~~~~p~~~~~--~v~f~~sGseA~e~Alk~ar~~t 125 (425)
T d1sffa_ 56 HLHPKVVAAVEAQLKK-LSHTCFQ---VLAYE----PYLELCEIMNQKVPGDFAK--KTLLVTTGSEAVENAVKIARAAT 125 (425)
T ss_dssp BTCHHHHHHHHHHTTT-CSCCCTT---TEECH----HHHHHHHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhh-cCCcccc---cccCc----HHHHHHHHHHhhhhhcccc--eeeeeccccchhhhHHHHhhhhh
Confidence 3488999998776543 2111111 11122 1222455677777543221 2345679999999998654 33
Q ss_pred CCCEEEecCCCCCcccccc-cccc----hhc-cccCCceEEEEeceecCCCCCC-C-HHHHHHHhh----hcCCeEEEEc
Q 018300 191 PHDRIMGLDLPHGGHLSHG-FMTP----KRR-VSGTSIYFESMPYRLDESTGLV-D-YDMLEKTAI----LFRPKLIIAG 258 (358)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~-~~~~----~~~-~~~~g~~~~~~~~~~~~~~~~i-D-~d~le~~i~----~~~~klIi~~ 258 (358)
..++|+...-.|.|.-... ..+. ... ...........+++........ + .+..++.+. ..++..|+++
T Consensus 126 ~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~E 205 (425)
T d1sffa_ 126 KRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIE 205 (425)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEEC
T ss_pred cccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEec
Confidence 4467777654333321100 0000 000 0000111112222222111110 0 111112111 1234567776
Q ss_pred CC--CCCC-CCC---HHHHHHHHHHcCCEEEEeccccccccccCCc--cCCCC-CCcEEEEcCcCcCcc-CcEEEEEEeC
Q 018300 259 AS--AYPR-DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKK 328 (358)
Q Consensus 259 ~s--~~~~-~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~--~~pl~-gaDiv~~S~hK~L~G-p~GG~I~~~~ 328 (358)
+- +.|. ..+ +++|.++|+++|+++|+|+.++ |+.-.|.. ..-++ ..|+++++ |.|+| ..-|++++++
T Consensus 206 Pi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~t-G~gR~g~~~a~~~~gv~PDi~~~g--K~l~gG~P~~av~~~~ 282 (425)
T d1sffa_ 206 PVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-GAGRTGTLFAMEQMGVAPDLTTFA--KSIAGGFPLAGVTGRA 282 (425)
T ss_dssp SBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTSCCSEEEEC--GGGGTSSCCEEEEEEH
T ss_pred CccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccc-cCCCcchhhHHHhcCCCccceecc--cccCCCcceEEEEEcH
Confidence 42 2332 222 8899999999999999999987 54222221 12233 56998766 99853 4457777777
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=98.06 E-value=9.8e-05 Score=70.73 Aligned_cols=209 Identities=16% Similarity=0.098 Sum_probs=107.2
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHhc----
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~all---- 189 (358)
-+|.|.+|+...+.. ......+ .+ ..+ ...++ .+++.+......+ ...+.+||++|+..++....
T Consensus 60 ~~p~i~~Ai~~q~~~-~~~~~~~-~~--~~~---~~~~l-~~~l~~~~~~~~~---~v~f~~sGseA~e~A~k~ar~~~~ 128 (429)
T d1s0aa_ 60 NHPQLNAAMKSQIDA-MSHVMFG-GI--THA---PAIEL-CRKLVAMTPQPLE---CVFLADSGSVAVEVAMKMALQYWQ 128 (429)
T ss_dssp SCHHHHHHHHHHHHH-CSCCCCS-SE--ECH---HHHHH-HHHHHHHSCTTCC---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh-cCCcccC-Cc--cch---HHHHH-HHHHHhhhccCcc---eeeeccccccchhhhhhhhhheee
Confidence 488999998876543 2211111 11 112 22232 3445666655432 34567899999998886542
Q ss_pred ---cCCCEEEecCCCCCcccccc-cccc----hhcc-ccCCceEEEEeceecCCCCCC---CHHHHHHHhhhc--CCeEE
Q 018300 190 ---KPHDRIMGLDLPHGGHLSHG-FMTP----KRRV-SGTSIYFESMPYRLDESTGLV---DYDMLEKTAILF--RPKLI 255 (358)
Q Consensus 190 ---~pGD~Vl~~~~~~ggh~s~~-~~~~----~~~~-~~~g~~~~~~~~~~~~~~~~i---D~d~le~~i~~~--~~klI 255 (358)
.+..+|+.....|.|.-... ..+. .... ..........+.......... +.+++++.+... +...|
T Consensus 129 ~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaav 208 (429)
T d1s0aa_ 129 AKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAV 208 (429)
T ss_dssp HHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEE
T ss_pred cccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCcccee
Confidence 23457888764332211000 0000 0000 000000111222122112233 345555544432 34567
Q ss_pred EEcCC--CCC-C-CCC---HHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcC-cc-CcEEE
Q 018300 256 IAGAS--AYP-R-DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL-RG-PRGGM 323 (358)
Q Consensus 256 i~~~s--~~~-~-~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L-~G-p~GG~ 323 (358)
++.+. ..+ . ..+ +++|.++|+++|+++|+|+.|. |+.-.|... ..++ ..|+++++ |.| .| ...+.
T Consensus 209 ivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~t-GfGRtG~~~~~~~~~v~PDi~~~g--K~l~gG~~p~~a 285 (429)
T d1s0aa_ 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT-GFGRTGKLFACEHAEIAPDILCLG--KALTGGTMTLSA 285 (429)
T ss_dssp EECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTSSSCCEE
T ss_pred eecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccc-cccccccccccccceecccccccc--cccccccccccc
Confidence 77653 222 2 222 8999999999999999999987 542223211 1122 46898776 888 34 46677
Q ss_pred EEEeCCCCchhHHHHHHhh
Q 018300 324 IFFKKDPVLGVELESAINN 342 (358)
Q Consensus 324 I~~~~~~~~~~~~~~~i~~ 342 (358)
+++++ ++.+.+..
T Consensus 286 v~~~~------~i~~~~~~ 298 (429)
T d1s0aa_ 286 TLTTR------EVAETISN 298 (429)
T ss_dssp EEECH------HHHHHHHT
T ss_pred hhhHH------HHHhccCC
Confidence 77777 67666644
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=97.89 E-value=6.2e-05 Score=72.00 Aligned_cols=198 Identities=12% Similarity=0.040 Sum_probs=96.4
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--ccC
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al--l~p 191 (358)
-+|.|.+|+.+.+... ..... .+ ...+ ..+ ..+++.+++.-..+ ...+.+|||+|+..++... ...
T Consensus 58 ~~p~v~~ai~~q~~~~-~~~~~--~~-~~~~----~~~-la~~L~~~~~~~~~---~v~f~~sGseA~e~Alk~Ar~~t~ 125 (431)
T d1zoda1 58 CHPEIVSVIGEYAGKL-DHLFS--EM-LSRP----VVD-LATRLANITPPGLD---RALLLSTGAESNEAAIRMAKLVTG 125 (431)
T ss_dssp TCHHHHHHHHHHHHHC-CCCCT--TC-CCHH----HHH-HHHHHHHHSCTTCC---EEEEESCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhc-ccccc--cc-ccHH----HHH-HHHHHHHhCCcccc---eeeecccccchHHHHHHHHHHhcC
Confidence 4788999888776532 21111 11 1222 222 34456666633222 2456789999999998754 344
Q ss_pred CCEEEecCCCCCcccccc-cccc---hh--ccccCCceEEEEeceec--CCC----CCCCH---HHHHHHhhhc---CCe
Q 018300 192 HDRIMGLDLPHGGHLSHG-FMTP---KR--RVSGTSIYFESMPYRLD--EST----GLVDY---DMLEKTAILF---RPK 253 (358)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~-~~~~---~~--~~~~~g~~~~~~~~~~~--~~~----~~iD~---d~le~~i~~~---~~k 253 (358)
.++|+..+-.|.|.-... ..+. .. .....+ ...++.+.. +.. ...+. +.+...+... +..
T Consensus 126 r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA 203 (431)
T d1zoda1 126 KYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVG--SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLA 203 (431)
T ss_dssp CCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTT--EEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEE
T ss_pred CcceeecccccccccchhhcccccccccccCCcccC--ceeeeeecccccccccccchhhhhhHHHHHHHHHHhcccccc
Confidence 567877654333310000 0000 00 000011 112221111 110 01122 3333332221 334
Q ss_pred EEEEcCC--CCCCCC----CHHHHHHHHHHcCCEEEEeccccccccccCCcc--CCCC-CCcEEEEcCcCcCcc-CcEEE
Q 018300 254 LIIAGAS--AYPRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PRGGM 323 (358)
Q Consensus 254 lIi~~~s--~~~~~~----dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~pl~-gaDiv~~S~hK~L~G-p~GG~ 323 (358)
.|++++- +.|... -+++|.++|+++|+++|.|+.++ |+.-.|... .-++ ..|+++++ |.|.| ..-+.
T Consensus 204 avi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~t-G~gRtG~~~~~~~~gv~PDi~~~g--K~l~gG~p~~a 280 (431)
T d1zoda1 204 AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT-GVGRTGTMFACQRDGVTPDILTLS--KTLGAGLPLAA 280 (431)
T ss_dssp EEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEEEEC--HHHHTTSSCEE
T ss_pred ceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccc-cccccccccccccCCCCcchhccc--cccccccccce
Confidence 6676642 223221 28999999999999999999987 543223211 1112 46898777 88743 23344
Q ss_pred EEEeC
Q 018300 324 IFFKK 328 (358)
Q Consensus 324 I~~~~ 328 (358)
+++++
T Consensus 281 v~~~~ 285 (431)
T d1zoda1 281 IVTSA 285 (431)
T ss_dssp EEECH
T ss_pred eeeee
Confidence 45554
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.62 E-value=0.00023 Score=68.68 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=46.1
Q ss_pred HHHHHHHhhh-----cCCeEEEEcCCC--CCC-CCC---HHHHHHHHHHcCCEEEEeccccccccccCCcc--C--CCC-
Q 018300 240 YDMLEKTAIL-----FRPKLIIAGASA--YPR-DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVA--D--PFK- 303 (358)
Q Consensus 240 ~d~le~~i~~-----~~~klIi~~~s~--~~~-~~d---l~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~--~--pl~- 303 (358)
++++++.+.. .++..|++++-. .|. ..+ +++|.++|+++|++||+|+.|+ |+.-.|.+. . .++
T Consensus 232 ~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~t-G~gRtG~~~~~e~~gi~~ 310 (461)
T d1ohwa_ 232 LEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQT-GGGSTGKFWAHEHWGLDD 310 (461)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTT-CSSTTSSSSGGGGGCCSS
T ss_pred HHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceecccccc-cccccccccccccccccc
Confidence 4555555432 234567776532 232 233 8999999999999999999987 443233211 1 122
Q ss_pred CCcEEEEcCcCcCcc
Q 018300 304 YCDVVTTTTHKSLRG 318 (358)
Q Consensus 304 gaDiv~~S~hK~L~G 318 (358)
..|+++++ |.+.|
T Consensus 311 ~PDiv~~g--K~l~~ 323 (461)
T d1ohwa_ 311 PADVMTFS--KKMMT 323 (461)
T ss_dssp CCSEEEEC--GGGSS
T ss_pred Cchhhhhh--hcccc
Confidence 36888766 87754
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=97.48 E-value=0.00053 Score=66.32 Aligned_cols=190 Identities=16% Similarity=0.162 Sum_probs=107.0
Q ss_pred CcHHHHHHHhhhhhcccCCCCCCC---cCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceEEeCCCHHHHHHHHHHh--
Q 018300 114 TSRAVMEAVGSCLTNKYSEGLPGK---RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-- 188 (358)
Q Consensus 114 ~s~~V~~al~~~l~~~~~~G~pg~---r~~~G~~~~~~lE~~~~~~la~lfg~~~~~~~v~V~~~SGt~A~~~a~~al-- 188 (358)
..|.|.+.+.+.++ .| .|+. ...|-.+.+-+ .+..+++++|.+- +|..+..|++|...++...
T Consensus 77 y~P~v~~~~~~~~T-aY---TPYQPaEiSQG~LQalfE----fQtmi~eLTGMdv----aNaS~yDGatA~aeA~~ma~r 144 (471)
T d1wyub1 77 YNPKLHEEAARLFA-DL---HPYQDPRTAQGALRLMWE----LGEYLKALTGMDA----ITLEPAAGAHGELTGILIIRA 144 (471)
T ss_dssp CCCHHHHHHHHTTS-SC---CTTSCGGGCHHHHHHHHH----HHHHHHHHHTCSE----EECCCSSHHHHHHHHHHHHHH
T ss_pred cCcchhhhHHHHHh-cc---CCCCCHHHHHHHHHHHHH----HHHHHHHHhCCCc----cccccchHHHHHHHHHHHHHH
Confidence 56788888765432 22 1221 11111122222 5667899999997 5777888877554443222
Q ss_pred --ccCCC----EEEecCCCCCcccccccccchhccccCCceEEEEeceecCCCCCCCHHHHHHHhhhcCCeEEEEcCCC-
Q 018300 189 --LKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA- 261 (358)
Q Consensus 189 --l~pGD----~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iD~d~le~~i~~~~~klIi~~~s~- 261 (358)
-+.|. .++.....+..... ......+. +.+.++.+ ..+..|.+.++..... ....+++..++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~-~~a~v~v~~p~~ 213 (471)
T d1wyub1 145 YHEDRGEGRTRRVVLVPDSAHGSNP-------ATASMAGY--QVREIPSG-PEGEVDLEALKRELGP-HVAALMLTNPNT 213 (471)
T ss_dssp HHHHTTCTTTCCEEEEETTSCTHHH-------HHHHHTTC--EEEEECBC-TTSSBCHHHHHHHCST-TEEEEEECSSCT
T ss_pred HhhhcccccccccccCCccccccee-------eeeecccc--eeeccccc-ccccccchhhhhhhhc-cccceeeccCCC
Confidence 12222 22322222211110 01122233 33443343 3568899988887654 45556665554
Q ss_pred CCCC-CCHHHHHHHHHHcCCEEEEeccccccccccCCccCCCC-CCcEEEEcCcCcC------ccCcEEEEEEeCC
Q 018300 262 YPRD-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSL------RGPRGGMIFFKKD 329 (358)
Q Consensus 262 ~~~~-~dl~~I~~ia~e~g~~livD~Ah~~Gl~~~g~~~~pl~-gaDiv~~S~hK~L------~Gp~GG~I~~~~~ 329 (358)
++.. .+.+++.+++++.|..+++|.+....+. +.. .|-+ ++|+++...|++| +||..|++.++++
T Consensus 214 ~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~--~l~-~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~ 286 (471)
T d1wyub1 214 LGLFERRILEISRLCKEAGVQLYYDGANLNAIM--GWA-RPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH 286 (471)
T ss_dssp TSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTT--TTC-CHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGG
T ss_pred cccccchhhhhHHHHHhccccccccccchhhhh--hcc-ccCcccccccccccccccccccccccccccceeehhh
Confidence 4543 3588999999999999999987543221 111 2223 8899988999976 4455588888875
|