Citrus Sinensis ID: 018324

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQHGPAESNEHDTA
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHcHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHcccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
msterhassstsaspeenAMFLDILheapllghrkshsifGSVVYCFVLAGYAILAAgttwifhpihylippllcSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQynslnsqpdvmkslysplqpsssleglryhdggrlSDEQMALLQYQRENLHFLSEEILRLQECLSKyeqsddgstpqVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTrrnqhgpaesnehdta
Flexible Loop (DISEMBL)
msterhassstsaspeeNAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREaevlrvrntnnqyveenERLRAILGEWSTRAAKLERalevermsnielqkkistrrnqhgpaesnehdta
Low Complexity Region (SEG)
MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHisilsistllriimliEAICAASFMSVYIGYVHQYNSLNSQPDVMKslysplqpssslEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQHGPAESNEHDTA
Disordered region (IsUnstruct)
*******************MFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSL***********************************MALLQYQRENLHFLSEEILRLQECLSK****************L***********************LARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKL************************************
Disordered Region (DISOPRED)
*******************MFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVM******************************LLQYQRENLHFL*************************************************************************************************************************************
Disordered Region (DISEMBL)
***************EENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKY*********QVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKI******************
Disordered Region (DISPRO)
****************ENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQ**DGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTR***************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLxxxxxxxxxxxxxxxxxxxxxLRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRxxxxxxxxxxxxxxxxxxxxxISTRRNQHGPAESNEHDTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
Q6NYE7	271	Transmembrane protein 192	yes	no	0.418	0.553	0.3	6e-06
Q5U1Y0	266	Transmembrane protein 192	yes	no	0.293	0.394	0.293	7e-06
Q9CXT7	266	Transmembrane protein 192	yes	no	0.427	0.575	0.262	2e-05

>sp|Q6NYE7|TM192_DANRE Transmembrane protein 192 OS=Danio rerio GN=tmem192 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 20/170 (11%)

Query: 79  VILLALTGIFQQYFVYQ--VQK----IRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLV 132
           V+LL    ++   F+Y   VQ+    +R +GY  F +  K I  LP  I + G AA+L V
Sbjct: 99  VVLLGKVALWVVVFIYDRVVQRRHSAVRRKGYLDFYRMTKGIKSLPLLIHSAGNAAILTV 158

Query: 133 I----VWRPHISILSISTLLRII---MLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKS 185
           I    +   ++  LS+  LL II   +L+  IC    +  Y  +V ++N     PDV + 
Sbjct: 159 IAPSSLLDANVKNLSVYLLLAIICLELLLTIIC----LLRYTVHVVKFNRKKPHPDVTEE 214

Query: 186 LYSPLQPSSSLEGLRYHDGGRLSD---EQMALLQYQRENLHFLSEEILRL 232
             S    S +     + DG  L D   +Q  L+ Y +++   LS  IL L
Sbjct: 215 ERSYGCSSDAHTETGFRDGSSLEDVVEKQADLIDYLKQHNSVLSRRILTL 264

Danio rerio (taxid: 7955)

>sp|Q5U1Y0|TM192_RAT Transmembrane protein 192 OS=Rattus norvegicus GN=Tmem192 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 79  VILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWR-- 136
           VIL  L  +F++Y  Y  +K+R +GY    +  +H+  L   I + G  A+LL++  +  
Sbjct: 101 VILWILHLLFERYIQYHHRKVRSRGYSQIYRSTRHLKALALTIHSSGNTALLLLLCVQYS 160

Query: 137 -PHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMK 184
            P  + L +  +L ++ L E IC+ S + +Y   + ++N    QPDV++
Sbjct: 161 FPEPNKLYLELILAVLAL-ELICSLSCLVLYTVKIRRFNKAKPQPDVLE 208

Rattus norvegicus (taxid: 10116)

>sp|Q9CXT7|TM192_MOUSE Transmembrane protein 192 OS=Mus musculus GN=Tmem192 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 82/160 (51%), Gaps = 7/160 (4%)

Query: 79  VILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWR-- 136
           +IL  L  +F++Y  Y  +K+R +GY    +  +H+  L   I + G  A+LL++  +  
Sbjct: 101 LILWILHLLFERYVQYHHRKVRSRGYSQIYRSTRHLKTLALTIHSSGNTALLLLLCVQHS 160

Query: 137 -PHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVM--KSLYSPLQPS 193
            P  S L +  +L ++ L E IC+ S + +YI  + ++N     PDV+  + +Y+    +
Sbjct: 161 FPEPSKLYLELILAVLAL-ELICSLSCLILYIVKIRRFNRAKPLPDVLEEEKIYAYPSNT 219

Query: 194 SSLEGLRYHDG-GRLSDEQMALLQYQRENLHFLSEEILRL 232
           +S  G R       + ++Q  ++ Y + +   LS+ +L L
Sbjct: 220 ASETGFRTVSSLEEIVEKQEDIIVYLKRHNALLSKRLLEL 259

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
297738563	353	unnamed protein product [Vitis vinifera]	0.969	0.983	0.824	1e-169
118482875	356	unknown [Populus trichocarpa]	0.986	0.991	0.816	1e-168
224141619	356	predicted protein [Populus trichocarpa]	0.986	0.991	0.814	1e-167
356556392	356	PREDICTED: uncharacterized protein LOC10	0.986	0.991	0.772	1e-160
449452570	357	PREDICTED: uncharacterized protein LOC10	0.986	0.988	0.771	1e-159
356530429	356	PREDICTED: uncharacterized protein LOC10	0.983	0.988	0.780	1e-159
255550447	356	conserved hypothetical protein [Ricinus	0.991	0.997	0.774	1e-158
18396221	355	FRIGIDA interacting protein 1 [Arabidops	0.960	0.969	0.798	1e-156
297831684	355	hypothetical protein ARALYDRAFT_319341 [	0.960	0.969	0.792	1e-154
297812241	348	hypothetical protein ARALYDRAFT_488961 [	0.972	1.0	0.722	1e-145

>gi|297738563|emb|CBI27808.3| unnamed protein product [Vitis vinifera]

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 287/348 (82%), Positives = 315/348 (90%), Gaps = 1/348 (0%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           MSTERH SS+TS SPEEN +FLD+LHEAPL GHRK  SI GSV YCF+LA YAILA    
Sbjct: 1   MSTERH-SSATSTSPEENTLFLDVLHEAPLFGHRKPTSIIGSVFYCFLLASYAILAVAAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           W+FHPI  L P LLCSC V  L +TG FQQY VYQVQKIRLQGYY FSQKLKHIVRLPFA
Sbjct: 60  WMFHPIKSLGPSLLCSCDVAFLMITGAFQQYLVYQVQKIRLQGYYMFSQKLKHIVRLPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
            TAYGTAAMLLV+VW+PHISILSIST+LRIIML+EA+CAASFMSVYIGYV+QYNSLNSQP
Sbjct: 120 TTAYGTAAMLLVMVWKPHISILSISTILRIIMLVEAVCAASFMSVYIGYVYQYNSLNSQP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+KSLYSPLQPSSSLEGLRY++GGRLSD+QMALLQYQRENLHFLSEEILRLQECLSKYE
Sbjct: 180 DVLKSLYSPLQPSSSLEGLRYYEGGRLSDQQMALLQYQRENLHFLSEEILRLQECLSKYE 239

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
           +S+DGSTPQVDLAHLLAARDQELRT+SAEMNQ+QSEL LARS +AER++E+ +VR TNNQ
Sbjct: 240 RSNDGSTPQVDLAHLLAARDQELRTVSAEMNQIQSELSLARSLIAERDSEIQQVRTTNNQ 299

Query: 301 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQHG 348
           Y+EENERLRAILGEWS RAAKLERALEVERMSN+ELQKKI+T RNQ  
Sbjct: 300 YIEENERLRAILGEWSNRAAKLERALEVERMSNLELQKKITTLRNQQN 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482875|gb|ABK93352.1| unknown [Populus trichocarpa]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 290/355 (81%), Positives = 321/355 (90%), Gaps = 2/355 (0%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           MSTERH +SS S S EENA+FLDI+ EAPL GHRKS SIFG++VYC +LAGYA+LAAG  
Sbjct: 1   MSTERHGNSS-STSREENALFLDIVQEAPLFGHRKSRSIFGAIVYCALLAGYAVLAAGAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           +IF PI +L+P LLCSC V+LL LTGIFQQYFV QVQKIRLQGYYSFSQKLKHIVRLPFA
Sbjct: 60  YIFRPIKHLVPSLLCSCDVVLLILTGIFQQYFVSQVQKIRLQGYYSFSQKLKHIVRLPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           ITAYGTA MLLV+VW+PHIS+LS+STLLRI ML EAICAASFMSVYIGY+HQYNSLNS+P
Sbjct: 120 ITAYGTATMLLVMVWKPHISVLSVSTLLRINMLAEAICAASFMSVYIGYLHQYNSLNSEP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           D++KSLYSPLQ SS LEGLRYHDG RLSD+QMALLQYQRENLHFLSEE+LRLQECLSKYE
Sbjct: 180 DILKSLYSPLQHSSPLEGLRYHDGSRLSDQQMALLQYQRENLHFLSEEVLRLQECLSKYE 239

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
           +SDDGSTPQVDLAHLLAAR+QELRTLSAEMNQLQSELRLARS +AER++E+ +VR TNNQ
Sbjct: 240 RSDDGSTPQVDLAHLLAAREQELRTLSAEMNQLQSELRLARSLIAERDSELQQVRTTNNQ 299

Query: 301 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQ-HGPAESNE 354
           YVEENERLRAILGEWS RAAKLERALE ERMSN+ELQK  ST RNQ H   E++E
Sbjct: 300 YVEENERLRAILGEWSARAAKLERALEGERMSNLELQKNFSTSRNQSHVSTETSE 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141619|ref|XP_002324164.1| predicted protein [Populus trichocarpa] gi|222865598|gb|EEF02729.1| predicted protein [Populus trichocarpa]

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 289/355 (81%), Positives = 320/355 (90%), Gaps = 2/355 (0%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           MSTERH +SS S S EENA+FLDI+ EAPL GHRKS SIFG++VYC +LA YA+LAAG  
Sbjct: 1   MSTERHGNSS-STSREENALFLDIVQEAPLFGHRKSRSIFGAIVYCALLASYAVLAAGAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           +IF PI +L+P LLCSC V+LL LTGIFQQYFV QVQKIRLQGYYSFSQKLKHIVRLPFA
Sbjct: 60  YIFRPIKHLVPSLLCSCDVVLLILTGIFQQYFVSQVQKIRLQGYYSFSQKLKHIVRLPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           ITAYGTA MLLV+VW+PHIS+LS+STLLRI ML EAICAASFMSVYIGY+HQYNSLNS+P
Sbjct: 120 ITAYGTATMLLVMVWKPHISVLSVSTLLRINMLAEAICAASFMSVYIGYLHQYNSLNSEP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           D++KSLYSPLQ SS LEGLRYHDG RLSD+QMALLQYQRENLHFLSEE+LRLQECLSKYE
Sbjct: 180 DILKSLYSPLQHSSPLEGLRYHDGSRLSDQQMALLQYQRENLHFLSEEVLRLQECLSKYE 239

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
           +SDDGSTPQVDLAHLLAAR+QELRTLSAEMNQLQSELRLARS +AER++E+ +VR TNNQ
Sbjct: 240 RSDDGSTPQVDLAHLLAAREQELRTLSAEMNQLQSELRLARSLIAERDSELQQVRTTNNQ 299

Query: 301 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQ-HGPAESNE 354
           YVEENERLRAILGEWS RAAKLERALE ERMSN+ELQK  ST RNQ H   E++E
Sbjct: 300 YVEENERLRAILGEWSARAAKLERALEGERMSNLELQKNFSTSRNQSHVSTETSE 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556392|ref|XP_003546510.1| PREDICTED: uncharacterized protein LOC100810116 [Glycine max]

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 275/356 (77%), Positives = 314/356 (88%), Gaps = 3/356 (0%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           M+T+R+AS   + SPEENA+FLDILHEAPL  HR++  + GSV+YC +LAGYA LA G  
Sbjct: 1   MATDRYASPPAT-SPEENALFLDILHEAPLFAHRQAARVIGSVLYCILLAGYATLAIGAH 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           WIF P+  LI P+LCSC V+LL LTGIFQQY VYQVQKIRLQGYYSFSQKLK IVR+PFA
Sbjct: 60  WIFRPVRGLISPVLCSCDVLLLLLTGIFQQYLVYQVQKIRLQGYYSFSQKLKFIVRIPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           ITAYGTAAMLLVIVW+P+   LSIS +LRIIM++EA+CA  FMS++IGY+HQYNSLNS P
Sbjct: 120 ITAYGTAAMLLVIVWKPYTGFLSISAILRIIMVVEAVCAGCFMSLFIGYIHQYNSLNSHP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+KSLYSPLQPSSSLEGLRYHD GRLSD+QMALLQYQRENLHFLSEEILRLQECLSKYE
Sbjct: 180 DVLKSLYSPLQPSSSLEGLRYHD-GRLSDQQMALLQYQRENLHFLSEEILRLQECLSKYE 238

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
           ++DD STPQVDLAHLLAARDQELRTLSAEMNQ+QSELRLARS +AER++E+  VR TNNQ
Sbjct: 239 RTDDRSTPQVDLAHLLAARDQELRTLSAEMNQVQSELRLARSLIAERDSEIQHVRMTNNQ 298

Query: 301 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQ-HGPAESNEH 355
           YVEENERLRAILGEWSTRAAKLERALE ERMS +ELQ+K+ST R+Q +   E+N+H
Sbjct: 299 YVEENERLRAILGEWSTRAAKLERALEAERMSTLELQRKLSTPRSQPYTSTEANQH 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452570|ref|XP_004144032.1| PREDICTED: uncharacterized protein LOC101208802 [Cucumis sativus] gi|449500496|ref|XP_004161113.1| PREDICTED: uncharacterized protein LOC101230501 [Cucumis sativus]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 273/354 (77%), Positives = 305/354 (86%), Gaps = 1/354 (0%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           M+ ERHASS  ++S E+NAMFLDILHEAPL GHRK     GS++YCFVL GYA LA G  
Sbjct: 1   MAAERHASSRATSS-EDNAMFLDILHEAPLFGHRKPARTVGSIIYCFVLVGYAALAIGAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           WIFHPI + + PLLCSC V+LL LTGIFQQY VYQV KIRLQGYYSFSQKLKHIVRLPFA
Sbjct: 60  WIFHPIKHFVEPLLCSCHVVLLMLTGIFQQYLVYQVHKIRLQGYYSFSQKLKHIVRLPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           +TAYGTAA+LLV+ W P IS LSI  +LR+IMLIEA+CA SFM +YI YV +YNSLNSQP
Sbjct: 120 VTAYGTAALLLVMAWEPQISALSIPIILRLIMLIEAVCAGSFMIIYISYVQKYNSLNSQP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+KSLYSPLQ SSSLE LRYHD GRLSD+QMALLQYQRENLHFL+EEILRLQECLSKYE
Sbjct: 180 DVLKSLYSPLQQSSSLEDLRYHDVGRLSDQQMALLQYQRENLHFLNEEILRLQECLSKYE 239

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
           +S DGSTPQVDLAH+LAARDQELRTLSAEMNQ+ SELRLARS +AER+ E+ ++  TN Q
Sbjct: 240 RSSDGSTPQVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIQKLLTTNKQ 299

Query: 301 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQHGPAESNE 354
           YVEENERLRAILGEWSTRAAKLERALE ERMSNIELQKKIST + Q   +E++E
Sbjct: 300 YVEENERLRAILGEWSTRAAKLERALEAERMSNIELQKKISTLKKQPHASETSE 353

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530429|ref|XP_003533784.1| PREDICTED: uncharacterized protein LOC100795952 [Glycine max]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 277/355 (78%), Positives = 310/355 (87%), Gaps = 3/355 (0%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           M+T+R+AS   + SPEENA+FLDILHEAPL  HRK+  + GSV YC +LAGYA LA G  
Sbjct: 1   MATDRYASPPAT-SPEENALFLDILHEAPLFAHRKAARVIGSVFYCILLAGYATLAIGAH 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           WIF P+  LI P+LCSC V+LL LTGIFQQY VYQVQKIRLQGYYSFSQKLK IVR+PFA
Sbjct: 60  WIFRPVQGLISPVLCSCDVLLLLLTGIFQQYLVYQVQKIRLQGYYSFSQKLKFIVRIPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           ITAYGTAAMLLVIVW+P+   LSIS +LRIIM++EA+ A  FMS+YIGY+HQYNSLNS P
Sbjct: 120 ITAYGTAAMLLVIVWKPYTGFLSISAILRIIMVVEAVSAVCFMSLYIGYIHQYNSLNSHP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+KSLYSPLQPSSSLEGLRYHD GRLSD+QMALLQYQRENLHFLSEEILRLQECLSKYE
Sbjct: 180 DVLKSLYSPLQPSSSLEGLRYHD-GRLSDQQMALLQYQRENLHFLSEEILRLQECLSKYE 238

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
            +DD STPQVDLAHLLAARDQELRTLSAEMNQ+QSELRLARS +AER++E+  VR TNNQ
Sbjct: 239 GTDDRSTPQVDLAHLLAARDQELRTLSAEMNQVQSELRLARSLIAERDSEIQHVRTTNNQ 298

Query: 301 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQHGPA-ESNE 354
           YVEENERLRAILGEWSTRAAKLERALE ERMS +ELQ+K+ST R+Q   A E+NE
Sbjct: 299 YVEENERLRAILGEWSTRAAKLERALEAERMSTLELQRKLSTLRSQSYTADEANE 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550447|ref|XP_002516274.1| conserved hypothetical protein [Ricinus communis] gi|223544760|gb|EEF46276.1| conserved hypothetical protein [Ricinus communis]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 278/359 (77%), Positives = 309/359 (86%), Gaps = 4/359 (1%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           MS ERH +S  S S EE +MF+DILHEAPL GHRK  SIFG+VVYC +LAGY++L A   
Sbjct: 1   MSVERHGNS-PSTSHEETSMFVDILHEAPLCGHRKRRSIFGAVVYCVILAGYSVLGAVAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
            +FH  H L+P LL SC V LL +TGIFQQYFV QVQKIRLQGYYSFSQKLKHIVRLPFA
Sbjct: 60  ILFH--HRLVPSLLSSCDVALLIITGIFQQYFVSQVQKIRLQGYYSFSQKLKHIVRLPFA 117

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           ITAYGTAAMLLV+VW+P IS LSIS LLRIIML EA+CA SFMS+YIGY+HQYNSL+SQP
Sbjct: 118 ITAYGTAAMLLVMVWKPQISFLSISALLRIIMLTEAVCAVSFMSIYIGYLHQYNSLDSQP 177

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           D++KSLYSPLQ SS LE LRYH GGRLSD+QMALLQYQRENLHF+SEEILRLQECLSKYE
Sbjct: 178 DILKSLYSPLQESSPLESLRYHHGGRLSDQQMALLQYQRENLHFMSEEILRLQECLSKYE 237

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
           +S DGSTPQVDLAH+LAAR+QELRTLSAEMNQLQ+ELRLARS +AER++EV +VR TNNQ
Sbjct: 238 RSSDGSTPQVDLAHMLAAREQELRTLSAEMNQLQTELRLARSLIAERDSEVQQVRTTNNQ 297

Query: 301 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQHG-PAESNEHDTA 358
           YVEENERLRAILGEWSTRAAKLERALEVER+SN+ELQKK+S  R Q   P E  E   A
Sbjct: 298 YVEENERLRAILGEWSTRAAKLERALEVERLSNLELQKKLSASRTQSNMPTEQREQHRA 356

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396221|ref|NP_565332.1| FRIGIDA interacting protein 1 [Arabidopsis thaliana] gi|20197504|gb|AAM15099.1| Expressed protein [Arabidopsis thaliana] gi|21554377|gb|AAM63484.1| unknown [Arabidopsis thaliana] gi|330250899|gb|AEC05993.1| FRIGIDA interacting protein 1 [Arabidopsis thaliana]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 277/347 (79%), Positives = 304/347 (87%), Gaps = 3/347 (0%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           MSTER ASS+   + EENAMFLDILHEAPL GHRKS S+ GS +Y  +LAGYAILAAG  
Sbjct: 1   MSTERRASSNPMTN-EENAMFLDILHEAPLFGHRKSRSLVGSYLYMLLLAGYAILAAGAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           W+FH +  L P LLC C V LL +TG+FQQYFVYQVQKIRLQGYYSFSQKLKH+VRLPFA
Sbjct: 60  WMFHRVQQLTPSLLCCCDVALLVVTGVFQQYFVYQVQKIRLQGYYSFSQKLKHVVRLPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           I AYGTAAMLLVIVWRP I ILSIS+L RIIML+EA+ A  FM +YIGYVHQYNS+NS+P
Sbjct: 120 IAAYGTAAMLLVIVWRPQIHILSISSLQRIIMLVEAVGAGFFMGLYIGYVHQYNSVNSRP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+KSLYSPLQPSSS+EGLRY++ GRLSD+Q ALLQYQRENLHFLSEEIL LQE LSKYE
Sbjct: 180 DVLKSLYSPLQPSSSMEGLRYYE-GRLSDQQTALLQYQRENLHFLSEEILCLQEKLSKYE 238

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
           QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARS +AER+AEV RV +TNNQ
Sbjct: 239 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSLIAERDAEVQRVNSTNNQ 298

Query: 301 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKI-STRRNQ 346
           Y+EENERLRAIL EWS RAA LERALEVERMSN ELQK++ STRR Q
Sbjct: 299 YIEENERLRAILSEWSMRAANLERALEVERMSNSELQKEVASTRRKQ 345

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831684|ref|XP_002883724.1| hypothetical protein ARALYDRAFT_319341 [Arabidopsis lyrata subsp. lyrata] gi|297329564|gb|EFH59983.1| hypothetical protein ARALYDRAFT_319341 [Arabidopsis lyrata subsp. lyrata]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 275/347 (79%), Positives = 300/347 (86%), Gaps = 3/347 (0%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           MSTER  SSS   + EENAMFLDILHEAPL GHRKS S+ GS +Y  +LA YAILAAG  
Sbjct: 1   MSTERR-SSSNPMTNEENAMFLDILHEAPLFGHRKSRSLVGSYLYIVLLASYAILAAGAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
            IFH +  L P LLC C V LL +TGIFQQYFVYQVQKIRLQGYYSFSQKLKH+VRLPFA
Sbjct: 60  LIFHRVEQLTPSLLCCCDVALLVVTGIFQQYFVYQVQKIRLQGYYSFSQKLKHVVRLPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           I AYGTAAMLLVIVWRP   ILSIS+L RIIML+EA+CA  FM +YIGYVHQYNS+NS+P
Sbjct: 120 IAAYGTAAMLLVIVWRPQFHILSISSLQRIIMLVEAVCAGFFMGLYIGYVHQYNSVNSRP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+KSLYSPLQPSSS+EGLRY++ GRLSD+Q ALLQYQRENLHFLSEEIL LQE LSKYE
Sbjct: 180 DVLKSLYSPLQPSSSMEGLRYYE-GRLSDQQTALLQYQRENLHFLSEEILSLQEKLSKYE 238

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
           QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARS +AER+AEV RV +TNNQ
Sbjct: 239 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSLIAERDAEVQRVNSTNNQ 298

Query: 301 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKIS-TRRNQ 346
           Y+EENERLRAIL EWS RAA LERALEVERMSN ELQK+++  RR Q
Sbjct: 299 YIEENERLRAILSEWSMRAANLERALEVERMSNSELQKEVAGGRRKQ 345

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812241|ref|XP_002874004.1| hypothetical protein ARALYDRAFT_488961 [Arabidopsis lyrata subsp. lyrata] gi|297319841|gb|EFH50263.1| hypothetical protein ARALYDRAFT_488961 [Arabidopsis lyrata subsp. lyrata]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 253/350 (72%), Positives = 294/350 (84%), Gaps = 2/350 (0%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           M+ +R ASS    + ++NAMFLDILHEAPL GHR+S S+ GS +Y  +LAGYAILAAG  
Sbjct: 1   MANDRRASSVNPTTEQDNAMFLDILHEAPLFGHRESRSLVGSCIYLIILAGYAILAAGAP 60

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           WI   + YLIP LLCSC V LL LTG+FQQYFV QVQKIRLQGYYSFSQKLKH+VRLPFA
Sbjct: 61  WILQSVEYLIPSLLCSCNVALLMLTGMFQQYFVNQVQKIRLQGYYSFSQKLKHVVRLPFA 120

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           I AYGTA+MLL +VWRP++S+L I T+ R IM +EAI AASFM V++GYV QYNS+NSQP
Sbjct: 121 IMAYGTASMLLFMVWRPYVSVLPIFTVQRFIMSVEAISAASFMIVFVGYVRQYNSVNSQP 180

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+ SLYSPLQP ++LEGLRYH+ GRLSD+QMALLQYQRENLH+LSEEILRLQE LSKYE
Sbjct: 181 DVLNSLYSPLQP-ATLEGLRYHEAGRLSDQQMALLQYQRENLHYLSEEILRLQESLSKYE 239

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
            +  G TPQVDLAHL+A RDQELRTLSAE++QL SEL LARS ++ER+ E+  VRNTNNQ
Sbjct: 240 TNGSG-TPQVDLAHLVATRDQELRTLSAEVDQLHSELNLARSLISERDREIQHVRNTNNQ 298

Query: 301 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQHGPA 350
           YV ENERLRAILGEWS RAAKLERALEVER+SN+EL+KK+S  R+Q   A
Sbjct: 299 YVAENERLRAILGEWSMRAAKLERALEVERISNLELRKKVSALRDQRQVA 348

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:505006239	355	FIP1 "AT2G06005" [Arabidopsis	0.960	0.969	0.731	1.2e-127
TAIR|locus:2149937	348	AT5G20580 "AT5G20580" [Arabido	0.960	0.988	0.679	1.8e-119
MGI|MGI:1920317	266	Tmem192 "transmembrane protein	0.536	0.721	0.237	0.00061
RGD|1309341	266	Tmem192 "transmembrane protein	0.427	0.575	0.231	0.00079
ZFIN|ZDB-GENE-040426-2254	271	tmem192 "transmembrane protein	0.424	0.560	0.261	0.00082

TAIR|locus:505006239 FIP1 "AT2G06005" [Arabidopsis thaliana (taxid:3702)]

 Score = 1253 (446.1 bits), Expect = 1.2e-127, P = 1.2e-127
 Identities = 254/347 (73%), Positives = 278/347 (80%)

Query:     1 MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
             MSTER ASS+   + EENAMFLDILHEAPL GHRKS S+ GS +Y  +LAGYAILAAG  
Sbjct:     1 MSTERRASSNPMTN-EENAMFLDILHEAPLFGHRKSRSLVGSYLYMLLLAGYAILAAGAP 59

Query:    61 WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
             W+FH +  L P LLC C V LL +TG+FQQYFVYQVQKIRLQGYYSFSQKLKH+VRLPFA
Sbjct:    60 WMFHRVQQLTPSLLCCCDVALLVVTGVFQQYFVYQVQKIRLQGYYSFSQKLKHVVRLPFA 119

Query:   121 ITAYGTAAMLLVIVWRPHXXXXXXXXXXXXXXXXEAICAASFMSVYIGYVHQYNSLNSQP 180
             I AYGTAAMLLVIVWRP                 EA+ A  FM +YIGYVHQYNS+NS+P
Sbjct:   120 IAAYGTAAMLLVIVWRPQIHILSISSLQRIIMLVEAVGAGFFMGLYIGYVHQYNSVNSRP 179

Query:   181 DVMKXXXXXXXXXXXXEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
             DV+K            EGLRY++G RLSD+Q ALLQYQRENLHFLSEEIL LQE LSKYE
Sbjct:   180 DVLKSLYSPLQPSSSMEGLRYYEG-RLSDQQTALLQYQRENLHFLSEEILCLQEKLSKYE 238

Query:   241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
             QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARS +AER+AEV RV +TNNQ
Sbjct:   239 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSLIAERDAEVQRVNSTNNQ 298

Query:   301 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKI-STRRNQ 346
             Y+EENERLRAIL EWS RAA LERALEVERMSN ELQK++ STRR Q
Sbjct:   299 YIEENERLRAILSEWSMRAANLERALEVERMSNSELQKEVASTRRKQ 345

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2149937 AT5G20580 "AT5G20580" [Arabidopsis thaliana (taxid:3702)]

 Score = 1176 (419.0 bits), Expect = 1.8e-119, P = 1.8e-119
 Identities = 235/346 (67%), Positives = 271/346 (78%)

Query:     1 MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
             M+ +R ASS   ++ ++NAMFLDILHEAPL GHR+S S+ GS +Y  +LA YAILAAG  
Sbjct:     1 MANDRRASSVNPSTEQDNAMFLDILHEAPLFGHRESRSLVGSCIYLIILACYAILAAGAP 60

Query:    61 WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
             WI   + YLIP LLCSC V LL LTG+FQQYFV QVQKIRLQGYYSFSQKLKH+VRLPFA
Sbjct:    61 WILQSVDYLIPSLLCSCNVALLMLTGMFQQYFVNQVQKIRLQGYYSFSQKLKHVVRLPFA 120

Query:   121 ITAYGTAAMLLVIVWRPHXXXXXXXXXXXXXXXXEAICAASFMSVYIGYVHQYNSLNSQP 180
             I AYGTA+MLL + WRP+                EAI AASFM V++GYV QYNS+NSQP
Sbjct:   121 IMAYGTASMLLFMEWRPYVSVLPIFTVQRFIMSVEAISAASFMIVFVGYVRQYNSVNSQP 180

Query:   181 DVMKXXXXXXXXXXXXEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
             DV+             EGLRYH+ GRLSD+QMALLQYQRENLH+LSEEILRLQE LSKYE
Sbjct:   181 DVLNSLYSPLQPAAL-EGLRYHEAGRLSDQQMALLQYQRENLHYLSEEILRLQESLSKYE 239

Query:   241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
              ++  STPQVDLAHL+A RDQELRTLSAE++QL SEL LARS ++ER+ E+  VRNTNNQ
Sbjct:   240 -TNGSSTPQVDLAHLVATRDQELRTLSAEVDQLHSELNLARSLISERDREIQHVRNTNNQ 298

Query:   301 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQ 346
             YV ENERLRAILGEWS RAAKLERALEVER+SNIEL+KK+S  R+Q
Sbjct:   299 YVAENERLRAILGEWSMRAAKLERALEVERISNIELRKKVSALRDQ 344

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1920317 Tmem192 "transmembrane protein 192" [Mus musculus (taxid:10090)]

 Score = 112 (44.5 bits), Expect = 0.00061, P = 0.00061
 Identities = 49/206 (23%), Positives = 85/206 (41%)

Query:    37 HSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSC---G-VILLALTGIFQQYF 92
             H +F  VV  F L G   L    T    P +Y  P  + +    G +IL  L  +F++Y 
Sbjct:    58 HVVF--VVLAF-LTGVPCLYPNPTEDKCPENYTSPLKVQTAIILGKLILWILHLLFERYV 114

Query:    93 VYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHXX---XXXXXXXXX 149
              Y  +K+R +GY    +  +H+  L   I + G  A+LL++  + H              
Sbjct:   115 QYHHRKVRSRGYSQIYRSTRHLKTLALTIHSSGNTALLLLLCVQ-HSFPEPSKLYLELIL 173

Query:   150 XXXXXEAICAASFMSVYIGYVHQYNSLNSQPDVMKXXXXXX--XXXXXXEGLRYHDG-GR 206
                  E IC+ S + +YI  + ++N     PDV++               G R       
Sbjct:   174 AVLALELICSLSCLILYIVKIRRFNRAKPLPDVLEEEKIYAYPSNTASETGFRTVSSLEE 233

Query:   207 LSDEQMALLQYQRENLHFLSEEILRL 232
             + ++Q  ++ Y + +   LS+ +L L
Sbjct:   234 IVEKQEDIIVYLKRHNALLSKRLLEL 259

GO:0003674 "molecular_function" evidence=ND

GO:0005764 "lysosome" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1309341 Tmem192 "transmembrane protein 192" [Rattus norvegicus (taxid:10116)]

 Score = 111 (44.1 bits), Expect = 0.00079, P = 0.00079
 Identities = 37/160 (23%), Positives = 68/160 (42%)

Query:    79 VILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWR-- 136
             VIL  L  +F++Y  Y  +K+R +GY    +  +H+  L   I + G  A+LL++  +  
Sbjct:   101 VILWILHLLFERYIQYHHRKVRSRGYSQIYRSTRHLKALALTIHSSGNTALLLLLCVQYS 160

Query:   137 -PHXXXXXXXXXXXXXXXXEAICAASFMSVYIGYVHQYNSLNSQPDVMKXXXXXX--XXX 193
              P                 E IC+ S + +Y   + ++N    QPDV++           
Sbjct:   161 FPEPNKLYLELILAVLAL-ELICSLSCLVLYTVKIRRFNKAKPQPDVLEEEKCYAYPSNI 219

Query:   194 XXXEGLRYHDG-GRLSDEQMALLQYQRENLHFLSEEILRL 232
                 G R       + ++Q  ++ Y + +   LS+ +L L
Sbjct:   220 ASETGFRTVSSLEEIVEKQGDIIVYLKRHNALLSKRLLEL 259

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-2254 tmem192 "transmembrane protein 192" [Danio rerio (taxid:7955)]

 Score = 111 (44.1 bits), Expect = 0.00082, P = 0.00082
 Identities = 44/168 (26%), Positives = 67/168 (39%)

Query:    79 VILLALTGIFQQYFVYQ--VQK----IRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLV 132
             V+LL    ++   F+Y   VQ+    +R +GY  F +  K I  LP  I + G AA+L V
Sbjct:    99 VVLLGKVALWVVVFIYDRVVQRRHSAVRRKGYLDFYRMTKGIKSLPLLIHSAGNAAILTV 158

Query:   133 IVWRPHXXXXXXXXXXXXXXXXEAICAASFMSV-----YIGYVHQYNSLNSQPDVMKXXX 187
             I   P                   IC    +++     Y  +V ++N     PDV +   
Sbjct:   159 IA--PSSLLDANVKNLSVYLLLAIICLELLLTIICLLRYTVHVVKFNRKKPHPDVTEEER 216

Query:   188 XXXXXXXXXEGLRYHDGGRLSD--EQMA-LLQYQRENLHFLSEEILRL 232
                          + DG  L D  E+ A L+ Y +++   LS  IL L
Sbjct:   217 SYGCSSDAHTETGFRDGSSLEDVVEKQADLIDYLKQHNSVLSRRILTL 264


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      358       330   0.00089  116 3  11 22  0.36    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  227 KB (2125 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.35u 0.13s 28.48t   Elapsed:  00:00:01
  Total cpu time:  28.35u 0.13s 28.48t   Elapsed:  00:00:01
  Start:  Sat May 11 07:45:06 2013   End:  Sat May 11 07:45:07 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-05
pfam09730	711	pfam09730, BicD, Microtubule-associated protein Bi	0.002

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 219 RENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELR 278
            E L  L E +  L+E L   E  +  +  + ++  L   R      L  E+ +L+ EL 
Sbjct: 750 EEELEELQERLEELEEELESLE--EALAKLKEEIEELEEKRQA----LQEELEELEEELE 803

Query: 279 LARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQK 338
            A   +   E E+  +     +  +E E L   + E   +  +LE  LE       EL++
Sbjct: 804 EAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE 863

Query: 339 KISTRRNQ 346
           ++     +
Sbjct: 864 ELEELEAE 871

Length = 1163

>gnl|CDD|220368 pfam09730, BicD, Microtubule-associated protein Bicaudal-D

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 17/101 (16%)

Query: 257 AARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENE-------RLR 309
           A+++        E   LQ+EL+  R+ ++  +AE  R+ + + +  EENE       RLR
Sbjct: 26  ASKEAYYLQRILE---LQAELKQLRAELSNVQAENERLSSLSQELKEENEMLELQRGRLR 82

Query: 310 AILGEWSTRAAKLER---ALEVERMSNIELQKKIST-RRNQ 346
             + E+  R A+L +    LE E   NI LQK++S  R++Q
Sbjct: 83  DEIKEYKFREARLLQDYSELEEE---NISLQKQVSVLRQSQ 120

BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER). For full functioning they bind with GSK-3beta pfam05350 to maintain the anchoring of microtubules to the centromere. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells. Length = 711

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
PF14802	236	TMEM192: TMEM192 family	100.0
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	95.85
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	94.89
PRK09039	343	hypothetical protein; Validated	92.7
PRK09039	343	hypothetical protein; Validated	91.31
TIGR03495	135	phage_LysB phage lysis regulatory protein, LysB fa	90.91
PLN03188	1320	kinesin-12 family protein; Provisional	90.61
PF14362	301	DUF4407: Domain of unknown function (DUF4407)	90.55
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	90.03
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	89.24
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	88.66
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	86.93
KOG0288	459	consensus WD40 repeat protein TipD [General functi	86.83
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	86.22
PRK11519	719	tyrosine kinase; Provisional	84.36
PF06548	488	Kinesin-related: Kinesin-related; InterPro: IPR010	84.28
KOG4552	272	consensus Vitamin-D-receptor interacting protein c	82.99
PF14802	236	TMEM192: TMEM192 family	82.94
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	82.85
PRK10884	206	SH3 domain-containing protein; Provisional	82.82
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	81.85
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	81.11
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	80.96
PF00038	312	Filament: Intermediate filament protein; InterPro:	80.83

>PF14802 TMEM192: TMEM192 family

Probab=100.00  E-value=1.2e-59  Score=439.13  Aligned_cols=195  Identities=33%  Similarity=0.471  Sum_probs=181.7

Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhcccc
Q 018324           39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHY--LIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVR  116 (358)
Q Consensus        39 ~~g~~~y~~~L~~yA~~~~~~pw~~~~~~~--~~~slL~y~~v~LWlLt~l~d~yvq~qH~KlRl~GYl~FYR~Tr~lkR  116 (358)
                      +.-+.+.+++.++.+++++++||.+-+..+  -..++++|+||+||++|+++|+|+|+||+|+|++||++|||+|+++||
T Consensus        24 v~~~~l~ll~~v~l~~~~~vl~~~~~~~~~~C~~y~iily~~v~lW~lt~l~d~y~k~~H~klr~~GY~~fyr~t~~~rr  103 (236)
T PF14802_consen   24 VPIFSLLLLLSVVLAIVGFVLCWYPPPDEDKCDVYFIILYLHVALWLLTYLFDRYIKHQHQKLRLQGYLDFYRKTKRLRR  103 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            344567777888999999999998877643  456899999999999999999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHHHHHHHhhccc-----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q 018324          117 LPFAITAYGTAAMLLVIVWRPHIS-----------ILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKS  185 (358)
Q Consensus       117 lPl~IvSlGNa~LLLI~~~~~~~~-----------~Ls~~~lLriil~LEli~al~~li~YIvkVrrFNk~kp~PDVl~e  185 (358)
                      +||+|||+||++||++++|.+++.           ++++.+++++++++|++|++||++.||+||+||||+||+|||+++
T Consensus       104 ~Pl~ivS~gna~LLlv~~~~~~~~~~~~~~~c~~~~ls~~~~l~i~~~lE~~~~~~~~i~Yiv~V~kFN~~~~~PDv~~~  183 (236)
T PF14802_consen  104 LPLQIVSLGNAVLLLVQAWQHHYFGPDFAEYCSVAPLSPQLYLQILCSLELLVLLPFLIIYIVKVRKFNKARPPPDVLRE  183 (236)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccccchhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchh
Confidence            999999999999999999999872           489999999999999999999999999999999999999999999


Q ss_pred             ccC--CCCCCCCCCCccccCCCc---hhHhhHHHHHHHHHHhHHhhHHHHHHH
Q 018324          186 LYS--PLQPSSSLEGLRYHDGGR---LSDEQMALLQYQRENLHFLSEEILRLQ  233 (358)
Q Consensus       186 e~s--~~~ps~~~~ElGfrd~g~---LlEKQADLIrYLkdHNa~LSkrIL~Lq  233 (358)
                      +++  +.+|+++++|+||+++++   ++|||||||+||||||++||+|||+||
T Consensus       184 ~~~~~~~~~~~~~~e~g~r~~~~~eellEkQadlI~yLk~hn~~L~~ril~l~  236 (236)
T PF14802_consen  184 EYSRSYLYPSSSSSELGFRDGSSLEELLEKQADLIRYLKEHNARLSRRILALT  236 (236)
T ss_pred             hhccccCCCCCCccccCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999  889999999999998874   999999999999999999999999985

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.85  E-value=0.18  Score=54.19  Aligned_cols=129  Identities=29%  Similarity=0.373  Sum_probs=101.9

Q ss_pred             hhHHHHHHHHHhhhhcccC-----CCCCchhhHHhhhhhchhHH--h--hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHH
Q 018324          225 LSEEILRLQECLSKYEQSD-----DGSTPQVDLAHLLAARDQEL--R--TLSAEMNQLQSELRLARSFVAEREAEVLRVR  295 (358)
Q Consensus       225 LSkrIL~Lq~~l~kye~~~-----~g~t~qvdl~h~la~r~qel--R--a~~Ae~~q~~~el~~ar~li~er~~e~~~~r  295 (358)
                      .-.+|=.+++.+.+|.+..     ||-+---.|-.==|+++++.  +  .+.+|+.|+..||...++..+.=.+..+.+.
T Consensus        62 ~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~  141 (772)
T KOG0999|consen   62 ARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLK  141 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3458888999999998764     55555555555558888876  2  7888899999998888888888888888888


Q ss_pred             hhhhhhhhHhHHHHHHHhhhhhhHHHHHH---HHHHhhhccHHHHHHHHHhhhcCCCCCccccc
Q 018324          296 NTNNQYVEENERLRAILGEWSTRAAKLER---ALEVERMSNIELQKKISTRRNQHGPAESNEHD  356 (358)
Q Consensus       296 ~~n~q~~eEn~rlRa~l~Ews~raakle~---ale~er~~~~~~~~~~~~~r~~~~~~~~~~~~  356 (358)
                      ..|..-..+--|||+.|.|..-|-++|=-   -||.|   |+-|||+++.+|+++.+-|.-.|+
T Consensus       142 e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEE---NIsLQKqVs~LR~sQVEyEglkhe  202 (772)
T KOG0999|consen  142 ESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEE---NISLQKQVSNLRQSQVEYEGLKHE  202 (772)
T ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHhhhhhhhhHHHHH
Confidence            88887778888999999999999998843   46666   778999999999998776655554

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=94.89  E-value=0.08  Score=57.86  Aligned_cols=107  Identities=28%  Similarity=0.334  Sum_probs=76.2

Q ss_pred             CCCCCchhhHHhhhhhchhHHh----hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhh
Q 018324          243 DDGSTPQVDLAHLLAARDQELR----TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTR  318 (358)
Q Consensus       243 ~~g~t~qvdl~h~la~r~qelR----a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~r  318 (358)
                      .||-+---+|-.==|+||.++.    .+.+|+.|++.++..+++..+.=....+.++..+....-|-.+||+-+.|...|
T Consensus        12 ~~g~~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~r   91 (717)
T PF09730_consen   12 KDGEEREESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFR   91 (717)
T ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555577888774    566666666666666666666666666666666666677778999999999999


Q ss_pred             HHHHHH---HHHHhhhccHHHHHHHHHhhhcCCCCCc
Q 018324          319 AAKLER---ALEVERMSNIELQKKISTRRNQHGPAES  352 (358)
Q Consensus       319 aakle~---ale~er~~~~~~~~~~~~~r~~~~~~~~  352 (358)
                      -++|=.   -||.|   |+-|||+++.+|+++.+-|.
T Consensus        92 E~rll~dyselEeE---NislQKqvs~Lk~sQvefE~  125 (717)
T PF09730_consen   92 EARLLQDYSELEEE---NISLQKQVSVLKQSQVEFEG  125 (717)
T ss_pred             HHHHhhhhHHHHHH---HHHHHHHHHHHHHhHHHHHH
Confidence            988853   46766   88899999999998755443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK09039 hypothetical protein; Validated

Probab=92.70  E-value=3.6  Score=41.16  Aligned_cols=40  Identities=28%  Similarity=0.271  Sum_probs=26.3

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324          306 ERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRN  345 (358)
Q Consensus       306 ~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~  345 (358)
                      ++|++-+.....+-+.||.+|++-.-..-|.+.+|.++..
T Consensus       140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~  179 (343)
T PRK09039        140 ELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR  179 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666666777777777666666666666666654

>PRK09039 hypothetical protein; Validated

Probab=91.31  E-value=2.3  Score=42.50  Aligned_cols=102  Identities=18%  Similarity=0.202  Sum_probs=66.1

Q ss_pred             HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHh
Q 018324          217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRN  296 (358)
Q Consensus       217 YLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~  296 (358)
                      ||.+....+.++|=+|+.+++.             |..+|+-+.+....+..++.+++.+++.|+..-++=++       
T Consensus        43 fLs~~i~~~~~eL~~L~~qIa~-------------L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~-------  102 (343)
T PRK09039         43 FLSREISGKDSALDRLNSQIAE-------------LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQA-------  102 (343)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            6667777777777777777743             77777777777778888888888877755443321111       


Q ss_pred             hhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324          297 TNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRN  345 (358)
Q Consensus       297 ~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~  345 (358)
                         +|.    -......+=..|++.|+.+|..++-..-|.+.++..++.
T Consensus       103 ---~~~----~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~  144 (343)
T PRK09039        103 ---LLA----ELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQ  144 (343)
T ss_pred             ---HHh----hhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence               111    112223455788999999999988877765555554444

>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family

Probab=90.91  E-value=2.9  Score=37.40  Aligned_cols=80  Identities=19%  Similarity=0.253  Sum_probs=70.5

Q ss_pred             hhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHH
Q 018324          260 DQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKK  339 (358)
Q Consensus       260 ~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~  339 (358)
                      -.+++.+.+++++.+.+++..+.-|..+++.|..+......-.++..+||..++-=+.-++.=|..++...--|-+||+=
T Consensus        18 ~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~W   97 (135)
T TIGR03495        18 SQRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRW   97 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            36788999999999999999999999999999999888888888899999999988888888888888777777777753

Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.

>PLN03188 kinesin-12 family protein; Provisional

Probab=90.61  E-value=2.6  Score=49.13  Aligned_cols=125  Identities=28%  Similarity=0.381  Sum_probs=82.8

Q ss_pred             hhHhhHHHHHHH----------HHHhHHhhH----HHHHHHHHhhhhcccCCCCCchhhH--Hhhhhhc-hh--------
Q 018324          207 LSDEQMALLQYQ----------RENLHFLSE----EILRLQECLSKYEQSDDGSTPQVDL--AHLLAAR-DQ--------  261 (358)
Q Consensus       207 LlEKQADLIrYL----------kdHNa~LSk----rIL~Lq~~l~kye~~~~g~t~qvdl--~h~la~r-~q--------  261 (358)
                      +-.|||+=|.-|          ++.|+..++    +|++|       ++..||.-|--|.  +.++.-. +.        
T Consensus       885 ~c~~qa~~i~ql~~lv~qyk~e~~~~~~~~~~~~~ki~~l-------~~~~dg~l~~~~~~~~~~~~~~~~~~~~~~~y~  957 (1320)
T PLN03188        885 FCTKQASEITQLNRLVQQYKHERECNAIIGQTREDKIIRL-------ESLMDGVLSKEDFLEEELASLMHEHKLLKEKYE  957 (1320)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhHHHH-------hhhcccccchhhhhhhhhhhhhhhHHHHHHHhh
Confidence            667888877653          244666665    34444       4455898766654  1111111 11        


Q ss_pred             ---HHhhhHHHHHhHHHHHHHHHhhh--hHhH---HHHHHHHh------------------------hh-----------
Q 018324          262 ---ELRTLSAEMNQLQSELRLARSFV--AERE---AEVLRVRN------------------------TN-----------  298 (358)
Q Consensus       262 ---elRa~~Ae~~q~~~el~~ar~li--~er~---~e~~~~r~------------------------~n-----------  298 (358)
                         |+=...-|+.++|.|+...|-.+  +||+   .|||.+|.                        .+           
T Consensus       958 ~~p~~~~~~~e~~~~~~e~~~~~~~~d~~ErEvll~eI~dlr~qL~~~~d~s~~s~~~~~~~l~l~y~~~~~~~~~~~~i 1037 (1320)
T PLN03188        958 NHPEVLRTKIELKRVQDELEHYRNFYDMGEREVLLEEIQDLRSQLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNTI 1037 (1320)
T ss_pred             cChhhhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccchhhhccchhhhhhhcCcccccccccc
Confidence               33233458899999999999988  5887   67888886                        11           


Q ss_pred             -----hhhhh--HhHH----------------HHHHHhhhhhhHHHHHHHHHHhhhccHHHHH
Q 018324          299 -----NQYVE--ENER----------------LRAILGEWSTRAAKLERALEVERMSNIELQK  338 (358)
Q Consensus       299 -----~q~~e--En~r----------------lRa~l~Ews~raakle~ale~er~~~~~~~~  338 (358)
                           .-...  |.||                ||.-|+-|.++|.||+.-|+.|+.-.-||..
T Consensus      1038 ~e~~~~~~e~~l~~er~~w~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~ 1100 (1320)
T PLN03188       1038 PESTDESPEKKLEQERLRWTEAESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKE 1100 (1320)
T ss_pred             ccccccchhHHHHHHHHHHHHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence                 00111  3444                6888999999999999999999998877754

>PF14362 DUF4407: Domain of unknown function (DUF4407)

Probab=90.55  E-value=12  Score=35.91  Aligned_cols=29  Identities=7%  Similarity=-0.040  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHhHHHh
Q 018324           73 LLCSCGVILLA-LTGIFQQYFVYQVQKIRL  101 (358)
Q Consensus        73 lL~y~~v~LWl-Lt~l~d~yvq~qH~KlRl  101 (358)
                      +.+..=.++|. +.+.+|+++....+|.+.
T Consensus        46 ~~ai~~glvwgl~I~~lDR~ivss~~~~~~   75 (301)
T PF14362_consen   46 WAAIPFGLVWGLVIFNLDRFIVSSIRKSDG   75 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            55555557775 467799999998776555

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=90.03  E-value=14  Score=33.15  Aligned_cols=38  Identities=18%  Similarity=0.211  Sum_probs=30.8

Q ss_pred             hhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCC
Q 018324          210 EQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGST  247 (358)
Q Consensus       210 KQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t  247 (358)
                      ++-+.|.-++--|..|-..+-.++.++.+.+..++|-+
T Consensus         3 ~k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~   40 (177)
T PF13870_consen    3 QKRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLH   40 (177)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            34556777788888889999999999999998888765

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=89.24  E-value=7.7  Score=38.15  Aligned_cols=129  Identities=16%  Similarity=0.210  Sum_probs=75.1

Q ss_pred             HHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHH
Q 018324          213 ALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVL  292 (358)
Q Consensus       213 DLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~  292 (358)
                      +-+.|+.+....+.+++-..+..+..|++.....+|+-....    =.+.+..+.+++.+++.|+...++-..+.-.++.
T Consensus       170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~----~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~  245 (362)
T TIGR01010       170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSA----QLSLISTLEGELIRVQAQLAQLRSITPEQNPQVP  245 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchH
Confidence            456788888888888999999999999998655565443211    1123455666666666777666665555444443


Q ss_pred             H----HHhhhhhhhhHhHHHHH----HHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324          293 R----VRNTNNQYVEENERLRA----ILGEWSTRAAKLERALEVERMSNIELQKKISTRRN  345 (358)
Q Consensus       293 ~----~r~~n~q~~eEn~rlRa----~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~  345 (358)
                      .    +.....|--+|+.++-+    .+..-..+-+.|++..|.-+-.-..+.+++.+.|-
T Consensus       246 ~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~  306 (362)
T TIGR01010       246 SLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRV  306 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2    34444555555555543    23333444556666666555444444444444443

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=88.66  E-value=21  Score=33.39  Aligned_cols=114  Identities=24%  Similarity=0.374  Sum_probs=79.0

Q ss_pred             hhHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhH
Q 018324          207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAE  286 (358)
Q Consensus       207 LlEKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~e  286 (358)
                      |.|.|.-+-+.-+| |..|-+=-.+-...+++|+.+      +-|+.-+++.-..|+|++-..+...+...+.+-.-|-+
T Consensus        21 l~elq~~l~~l~~E-Nk~Lk~lq~Rq~kAL~k~e~~------e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~   93 (194)
T PF15619_consen   21 LAELQRKLQELRKE-NKTLKQLQKRQEKALQKYEDT------EAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKD   93 (194)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444433333 233332223334469999987      33677789999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhhhhhh---------------hHhHHHHHHHhhhhhhHHHHHHHHH
Q 018324          287 REAEVLRVRNTNNQYV---------------EENERLRAILGEWSTRAAKLERALE  327 (358)
Q Consensus       287 r~~e~~~~r~~n~q~~---------------eEn~rlRa~l~Ews~raakle~ale  327 (358)
                      .|.++++.+..+..+.               .+-+.+.+.|.+--.+...||+-+|
T Consensus        94 ~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~le  149 (194)
T PF15619_consen   94 KDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLE  149 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888776522               2334556667777777777776654

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=86.93  E-value=12  Score=40.98  Aligned_cols=41  Identities=15%  Similarity=0.178  Sum_probs=17.0

Q ss_pred             hHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHH
Q 018324          287 REAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALE  327 (358)
Q Consensus       287 r~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale  327 (358)
                      -..++..+...-....++.+.++..+.++..+...++..++
T Consensus       864 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  904 (1179)
T TIGR02168       864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELR  904 (1179)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333334444444444444444444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=86.83  E-value=5.5  Score=41.77  Aligned_cols=63  Identities=32%  Similarity=0.368  Sum_probs=54.2

Q ss_pred             hhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHH
Q 018324          249 QVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAI  311 (358)
Q Consensus       249 qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~  311 (358)
                      -.|+.|-||-=++---.++|++..+..|-+.-++-+.+++.|++++...|.|--||--|.++.
T Consensus        15 ~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~   77 (459)
T KOG0288|consen   15 LIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEAT   77 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            458888888777777799999999999999999999999999999999999977776665443

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=86.22  E-value=22  Score=38.80  Aligned_cols=128  Identities=15%  Similarity=0.211  Sum_probs=68.0

Q ss_pred             HHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHH
Q 018324          214 LLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLR  293 (358)
Q Consensus       214 LIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~  293 (358)
                      -++|+.+....+.+++-..+.++.+|++..+-.++..+....+.    ++..+.+++.+++.+.........++--+++.
T Consensus       268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~----~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~  343 (726)
T PRK09841        268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLE----QIVNVDNQLNELTFREAEISQLYKKDHPTYRA  343 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence            47899999999999999999999999998544444444333322    23344444444444444334444444444444


Q ss_pred             HHhhhhhhhhHhHHHHH---HHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324          294 VRNTNNQYVEENERLRA---ILGEWSTRAAKLERALEVERMSNIELQKKISTRRN  345 (358)
Q Consensus       294 ~r~~n~q~~eEn~rlRa---~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~  345 (358)
                      ++..-++=-.+.+++++   .+.+.......|||..+.-|--=..|-++..+.+-
T Consensus       344 l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i  398 (726)
T PRK09841        344 LLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSI  398 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43322211112222222   23344555556666666655444444444444433

>PRK11519 tyrosine kinase; Provisional

Probab=84.36  E-value=31  Score=37.58  Aligned_cols=40  Identities=13%  Similarity=0.182  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhh
Q 018324          212 MALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVD  251 (358)
Q Consensus       212 ADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvd  251 (358)
                      ..-+.|+.+....+.+++=..+..+.+|++...-.+++.+
T Consensus       266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~e  305 (719)
T PRK11519        266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLE  305 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHH
Confidence            3678899999999999999999999999987443344433

>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants

Probab=84.28  E-value=21  Score=37.90  Aligned_cols=79  Identities=29%  Similarity=0.363  Sum_probs=58.6

Q ss_pred             HHhhhHHHHHhHHHHHHHHHhh---hhHhHH---HHHHHHhhh------------------------------------h
Q 018324          262 ELRTLSAEMNQLQSELRLARSF---VAEREA---EVLRVRNTN------------------------------------N  299 (358)
Q Consensus       262 elRa~~Ae~~q~~~el~~ar~l---i~er~~---e~~~~r~~n------------------------------------~  299 (358)
                      |+-.-.=|+.++|.||...|..   ++||+.   |||.+|.-=                                    .
T Consensus       196 evl~~~~E~k~~qeel~~~~~~~~d~~EkE~Ll~EIq~Lk~qL~~~~~ss~s~~~~~~sll~~s~~~~~~~~~~~~~~~~  275 (488)
T PF06548_consen  196 EVLKEKIELKRVQEELEEYRNFSFDMGEKEVLLEEIQDLKSQLQYYTDSSMSTDRLRSSLLQRSYQLRPSAIPESGDENA  275 (488)
T ss_pred             HHHhhHhHHHHHHHHHHhccccccCcchHHHHHHHHHHHHHHHHhccccccccccccccHHhhhhccCCCCCcccCCCch
Confidence            5555566899999999999999   999986   566555311                                    1


Q ss_pred             hhhhH----------------hHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHH
Q 018324          300 QYVEE----------------NERLRAILGEWSTRAAKLERALEVERMSNIELQKKI  340 (358)
Q Consensus       300 q~~eE----------------n~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~  340 (358)
                      -+.=|                .+-||.-|+--..+|.|+|.-|+.|+..+-||..-+
T Consensus       276 ~~~le~er~~wtE~ES~WIsLteeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al  332 (488)
T PF06548_consen  276 EEELEQERQRWTEAESKWISLTEELRVDLESSRSLAEKLEMELDSEKKCTEELDDAL  332 (488)
T ss_pred             hhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            12222                345778888888999999999999999999887644

Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].

>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]

Probab=82.99  E-value=6.9  Score=38.08  Aligned_cols=77  Identities=19%  Similarity=0.382  Sum_probs=57.4

Q ss_pred             HHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHh---hhHHHHHhHHHHHHHHHhhhhHhHHHHHHH
Q 018324          218 QRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELR---TLSAEMNQLQSELRLARSFVAEREAEVLRV  294 (358)
Q Consensus       218 LkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelR---a~~Ae~~q~~~el~~ar~li~er~~e~~~~  294 (358)
                      .-|..-.++|+|...-....+-+-...|-|  ||+-.||.+++.|.+   .++-|-...+.+.+.-++....||++||++
T Consensus        16 ~~dDlE~i~kelie~l~~~~~qk~l~~gE~--v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqL   93 (272)
T KOG4552|consen   16 SADDLEHIVKELIETLINRDKQKMLKNGET--VNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQL   93 (272)
T ss_pred             HhhHHHHHHHHHHHHHHhhhHHHHHhcchH--HHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            345556677777765544433333345544  689999999999998   566777778889999999999999999998


Q ss_pred             Hh
Q 018324          295 RN  296 (358)
Q Consensus       295 r~  296 (358)
                      ..
T Consensus        94 qk   95 (272)
T KOG4552|consen   94 QK   95 (272)
T ss_pred             HH
Confidence            64

>PF14802 TMEM192: TMEM192 family

Probab=82.94  E-value=11  Score=36.25  Aligned_cols=33  Identities=21%  Similarity=0.233  Sum_probs=30.0

Q ss_pred             hhHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhh
Q 018324          207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKY  239 (358)
Q Consensus       207 LlEKQADLIrYLkdHNa~LSkrIL~Lq~~l~ky  239 (358)
                      -.+.+.|++++|.|-.++|.++..+||+++.++
T Consensus       203 ~~~~~eellEkQadlI~yLk~hn~~L~~ril~l  235 (236)
T PF14802_consen  203 DGSSLEELLEKQADLIRYLKEHNARLSRRILAL  235 (236)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445999999999999999999999999998765

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=82.85  E-value=2.5  Score=45.77  Aligned_cols=69  Identities=22%  Similarity=0.339  Sum_probs=0.0

Q ss_pred             HHHHhhhhHhHHHHHHHHhhhhhhh---hHhHHHHHHHhhhhhhHHH---HHHHHHH--hhhcc-HHHHHHHHHhhhc
Q 018324          278 RLARSFVAEREAEVLRVRNTNNQYV---EENERLRAILGEWSTRAAK---LERALEV--ERMSN-IELQKKISTRRNQ  346 (358)
Q Consensus       278 ~~ar~li~er~~e~~~~r~~n~q~~---eEn~rlRa~l~Ews~raak---le~ale~--er~~~-~~~~~~~~~~r~~  346 (358)
                      .-.+.-+.+-+.++..+|..|....   +|...||.-||+|..+|.|   +|..+|.  +++.. -++++++..|+.+
T Consensus       263 ~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~  340 (713)
T PF05622_consen  263 DDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEED  340 (713)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345556677889999999998766   6778899999999886666   5555543  23332 2455566666553

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=82.82  E-value=10  Score=35.82  Aligned_cols=63  Identities=19%  Similarity=0.232  Sum_probs=33.7

Q ss_pred             hhHHHHHhHHHHHHHHHhhhhHhHHHHHHH-Hhhhhh---hhhHhHHHHHHHhhhhhhHHHHHHHHH
Q 018324          265 TLSAEMNQLQSELRLARSFVAEREAEVLRV-RNTNNQ---YVEENERLRAILGEWSTRAAKLERALE  327 (358)
Q Consensus       265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~-r~~n~q---~~eEn~rlRa~l~Ews~raakle~ale  327 (358)
                      ++.+|+..++++|.-++.-.++|.+|+++- -..|++   =.+||++|+..|.+=......||..++
T Consensus        97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~  163 (206)
T PRK10884         97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD  163 (206)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555555555666665552 222222   345777887777775555555554443

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=81.85  E-value=20  Score=36.65  Aligned_cols=37  Identities=14%  Similarity=0.296  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCc
Q 018324          212 MALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTP  248 (358)
Q Consensus       212 ADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~  248 (358)
                      .+.+.|+.+.+..+.+++-..+..+.+|++......|
T Consensus       160 ~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~  196 (498)
T TIGR03007       160 DSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILP  196 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence            3578899999999999999999999999876443333

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=81.11  E-value=3.9  Score=43.21  Aligned_cols=68  Identities=24%  Similarity=0.283  Sum_probs=37.6

Q ss_pred             hhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018324          260 DQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVER  330 (358)
Q Consensus       260 ~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er  330 (358)
                      ..|++++-+|=|+=+.-+|.-=+-..+=..+++.+..-|.+..+||+|||+-..-=..   +++.|++.||
T Consensus        44 pee~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~---~i~~av~~~~  111 (472)
T TIGR03752        44 PEELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ---QIQQAVQSET  111 (472)
T ss_pred             cchhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHhhh
Confidence            3344444433333333333333333333445667788899999999999985443333   3445555544

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=80.96  E-value=40  Score=36.52  Aligned_cols=132  Identities=19%  Similarity=0.242  Sum_probs=79.3

Q ss_pred             HHHHHHHhHHhhHHHHHHHHHhhhhcccCC--CCCchhhHHhhhhhc-------hhHHhhhHHHHHhHHHHH--------
Q 018324          215 LQYQRENLHFLSEEILRLQECLSKYEQSDD--GSTPQVDLAHLLAAR-------DQELRTLSAEMNQLQSEL--------  277 (358)
Q Consensus       215 IrYLkdHNa~LSkrIL~Lq~~l~kye~~~~--g~t~qvdl~h~la~r-------~qelRa~~Ae~~q~~~el--------  277 (358)
                      .|||...|+.|...|=-|+..+++--..-.  =.++-.++-.+++.-       ++|++.+..|.+.+..-+        
T Consensus        58 VR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~  137 (546)
T KOG0977|consen   58 VRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERR  137 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence            478888888888888777766632111100  001222444444433       234455555554443322        


Q ss_pred             ------HHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhhc
Q 018324          278 ------RLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQ  346 (358)
Q Consensus       278 ------~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~~  346 (358)
                            +...+-|++-++|+..+..-...-.+|..||++-.+---.--+++=..|++|.+.-.+++-++.+|...
T Consensus       138 ~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Llee  212 (546)
T KOG0977|consen  138 GAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEE  212 (546)
T ss_pred             hhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence                  222445556677777777777777777777777666555555566667888998888888887777653

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=80.83  E-value=23  Score=33.89  Aligned_cols=106  Identities=20%  Similarity=0.167  Sum_probs=55.9

Q ss_pred             HHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHH
Q 018324          215 LQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRV  294 (358)
Q Consensus       215 IrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~  294 (358)
                      .++|.+.|..|..+|-.+....     ...++........-+..=.+.+-.++.|..+++.|+..++..+++=.......
T Consensus        20 Vr~LE~~N~~Le~~i~~~~~~~-----~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e   94 (312)
T PF00038_consen   20 VRFLEQENKRLESEIEELREKK-----GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE   94 (312)
T ss_dssp             HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHhcc-----cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence            5778888888877776665543     00000011111111111123344667777777777777777776665555555


Q ss_pred             HhhhhhhhhHhHHHHHHHhhhhhhHHHHHHH
Q 018324          295 RNTNNQYVEENERLRAILGEWSTRAAKLERA  325 (358)
Q Consensus       295 r~~n~q~~eEn~rlRa~l~Ews~raakle~a  325 (358)
                      ...+..-.+|...||..+++=...-..||..
T Consensus        95 ~~~~~~le~el~~lrk~ld~~~~~r~~le~~  125 (312)
T PF00038_consen   95 LAERKDLEEELESLRKDLDEETLARVDLENQ  125 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHH
Confidence            5555666667777776666544444444443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 9e-07
 Identities = 45/347 (12%), Positives = 95/347 (27%), Gaps = 105/347 (30%)

Query: 3   TERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWI 62
           T R    +   S       + + H +  L   +  S+                     ++
Sbjct: 271 TTRFKQVTDFLSAA-TTTHISLDHHSMTLTPDEVKSLLLK------------------YL 311

Query: 63  FHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGY-YSFSQKLKHIVRL---- 117
                 L P  + +     L++     +             + +    KL  I+      
Sbjct: 312 DCRPQDL-PREVLTTNPRRLSIIAESIRDG-----LATWDNWKHVNCDKLTTIIESSLNV 365

Query: 118 --P---------FAITAYGT--AAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMS 164
             P          ++         +LL ++W   I           +M++          
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK--------SDVMVVVNKL------ 411

Query: 165 VYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHF 224
                 H+Y+ +  QP   +S  S                       + L   + EN + 
Sbjct: 412 ------HKYSLVEKQPK--ESTIS------------IPSI------YLELKV-KLENEYA 444

Query: 225 LSEEILRLQECLSKYEQSDDGSTPQVD------LA-HLLAA----RDQELRTLSAEMNQL 273
           L   I+        ++  DD   P +D      +  HL       R    R +  +   L
Sbjct: 445 LHRSIVDHYNIPKTFDS-DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 274 QSELR---LARSFVAEREAEVLRVRNTNNQYVEENE-----RLRAIL 312
           + ++R    A +        + +++     Y+ +N+      + AIL
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFY-KPYICDNDPKYERLVNAIL 549

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 40/299 (13%), Positives = 82/299 (27%), Gaps = 91/299 (30%)

Query: 87  IFQQYFV--YQVQKIR--LQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISIL 142
           +F+  FV  +  + ++   +   S  +++ HI+                           
Sbjct: 24  VFEDAFVDNFDCKDVQDMPKSILS-KEEIDHIIMSK------------------------ 58

Query: 143 SISTLLRIIMLIEAICA--ASFMSVYIGYVHQYNSLNSQPDVMKSL-YSPLQPSSSLEG- 198
               +   + L   + +     +  ++  V + N       +M  +     QPS      
Sbjct: 59  --DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN----YKFLMSPIKTEQRQPSMMTRMY 112

Query: 199 LRYHDGGRLSDEQMALLQYQ--RENLHFLSEEILRLQECLSKYEQSDD-------GSTPQ 249
           +   D  RL ++     +Y   R       +  L+L++ L +   + +       GS   
Sbjct: 113 IEQRD--RLYNDNQVFAKYNVSRL------QPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 250 VDLAHLLAARDQEL----------------RTLSAEMNQLQSELRLARSFVAEREAEVLR 293
             +A L      ++                 +    +  LQ    L         +    
Sbjct: 165 W-VA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK---LLYQIDPNWTSRSDH 219

Query: 294 VRNTNNQYVEENERLRAILGEWSTRAAKLERAL----EVERMSNIE---LQKKI--STR 343
             N   +       LR +L          E  L     V+         L  KI  +TR
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSK-----PYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 23/137 (16%), Positives = 53/137 (38%), Gaps = 6/137 (4%)

Query: 220  ENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRL 279
             NL    E+   L +  +K+E          +L   L   ++  + L     +L+ E   
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMIS------ELEVRLKKEEKSRQELEKIKRKLEGESSD 1071

Query: 280  ARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKK 339
                +AE +A++  ++    +  EE +   A L + +++     + +        +LQ+ 
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1131

Query: 340  ISTRRNQHGPAESNEHD 356
            + + +     AE  + D
Sbjct: 1132 LESEKAARNKAEKQKRD 1148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	85.97
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	85.64

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.11  E-value=1.7  Score=42.88  Aligned_cols=92  Identities=16%  Similarity=0.177  Sum_probs=54.3

Q ss_pred             hhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHH------------------HHHHHHhhhhhhhhHhHHHHHHHhhh--
Q 018324          256 LAARDQELRTLSAEMNQLQSELRLARSFVAEREA------------------EVLRVRNTNNQYVEENERLRAILGEW--  315 (358)
Q Consensus       256 la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~------------------e~~~~r~~n~q~~eEn~rlRa~l~Ew--  315 (358)
                      +...+.+++.+.+|.++.+..+...+..|+++..                  +++.++..+.....+++++....++-  
T Consensus       458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  537 (597)
T 3oja_B          458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQK  537 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhc
Confidence            3335567777777777777777777777766532                  23344444444555555555444222  


Q ss_pred             -----hhhHHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 018324          316 -----STRAAKLERALEVERMSNIELQKKISTRRNQH  347 (358)
Q Consensus       316 -----s~raakle~ale~er~~~~~~~~~~~~~r~~~  347 (358)
                           .....++|+.+|..+-.-.|++++.+..+.+.
T Consensus       538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~  574 (597)
T 3oja_B          538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV  574 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence                 23444666666666666666766666666543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=85.97  E-value=6.4  Score=38.80  Aligned_cols=78  Identities=12%  Similarity=0.004  Sum_probs=51.7

Q ss_pred             HHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324          268 AEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRN  345 (358)
Q Consensus       268 Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~  345 (358)
                      ..++++..+.+..+...+.+.++.++.+..-++..++-+.++...+++..+..+-...++.-+-.+..+.+++.++=.
T Consensus       502 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~  579 (597)
T 3oja_B          502 RSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA  579 (597)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344566666666677777777777777777766666777666777777776666666666655555566666665544

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=85.64  E-value=15  Score=30.80  Aligned_cols=56  Identities=23%  Similarity=0.284  Sum_probs=23.5

Q ss_pred             HhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhh
Q 018324          263 LRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTR  318 (358)
Q Consensus       263 lRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~r  318 (358)
                      +..+..+++.++.++..+..-+..-+.++..+..--.....+.+++..-+.+...+
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (284)
T 1c1g_A           57 LDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQK  112 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444433333334444444433333333

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00